Psyllid ID: psy12373

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------20
Protein Sequence
MGWGALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCSSGHHP
Secondary Structure (PSIPRED)
cccHHccHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHccHHHHEEEEHHccccHHHHHHHHHHcccHHHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHHHHHHccHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccc
Coil and Loop (DISEMBL)
mgwgaltldrgkwtlyesagnyEKAATCYIQLKNWTkigqllphikSATTFIQYAKAKEAMGSYResvgayeraedydnVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKflleedepnpvELKRLAIHFEEDKGVLTSFRvsqqsrampcssghhp
Flexible Loop (DISEMBL)
mgwgaltldrgkwTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAvdivkakkctEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFrvsqqsrampcssghhp
Low Complexity Region (SEG)
MGWGALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCSSGHHP
Disordered region (IsUnstruct)
**WGALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE*****VELKRLAIHFEEDKGVL********************
Disordered Region (DISOPRED)
******TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPC******
Disordered Region (DISEMBL)
MGWGALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVS**************
Disordered Region (DISPRO)
*GWGALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCS*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGWGALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCSSGHHP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	198	2.2.26 [Sep-21-2011]
Q3UGF1	1341	WD repeat-containing prot	yes	N/A	0.808	0.119	0.459	5e-37
Q8NEZ3	1342	WD repeat-containing prot	yes	N/A	0.883	0.130	0.438	7e-37

>sp|Q3UGF1|WDR19_MOUSE WD repeat-containing protein 19 OS=Mus musculus GN=Wdr19 PE=1 SV=1

 Score =  154 bits (388), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 74/161 (45%), Positives = 111/161 (68%), Gaps = 1/161 (0%)

Query: 15   LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
            LYE    Y++AA+ YI+ KNW K+G+LLPH+ S    +QYAKAKEA G Y+E+V AYE A
Sbjct: 862  LYEKGQYYDRAASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENA 921

Query: 75   EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
            + +++V+R+ LDHLN+   AV IV+  +  +GAK +A +  + GD+G+AI FL+LSKC  
Sbjct: 922  KQWNSVIRIYLDHLNNPEKAVSIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVLSKCNN 981

Query: 135  DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
            +AF L+QQH K+  +   +  ED  N  + + +A++FE +K
Sbjct: 982  EAFTLAQQHNKMEIYADIIGAEDTTNE-DYQSIALYFEGEK 1021

May be involved in cilia function and/or assembly.
Mus musculus (taxid: 10090)

>sp|Q8NEZ3|WDR19_HUMAN WD repeat-containing protein 19 OS=Homo sapiens GN=WDR19 PE=1 SV=2

 Score =  153 bits (386), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 79/180 (43%), Positives = 117/180 (65%), Gaps = 5/180 (2%)

Query: 15   LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
            LYE    Y+KAA+ YI+ KNW K+G LLPH+ S    +QYAKAKEA G Y+E+V AYE A
Sbjct: 862  LYEKGLYYDKAASVYIRSKNWAKVGDLLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENA 921

Query: 75   EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
            + + +V+R+ LDHLN+   AV+IV+  +  +GAK +A +  + GD+G+AI FL++SKC  
Sbjct: 922  KQWQSVIRIYLDHLNNPEKAVNIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNN 981

Query: 135  DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAM 190
            +AF L+QQH K+  +   +  ED  N  + + +A++FE +K  L +        Q SRA+
Sbjct: 982  EAFTLAQQHNKMEIYADIIGSEDTTNE-DYQSIALYFEGEKRYLQAGKFFLLCGQYSRAL 1040

May be involved in cilia function and/or assembly.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
307199281	1364	WD repeat-containing protein 19 [Harpegn	0.828	0.120	0.502	2e-39
383852095	1371	PREDICTED: WD repeat-containing protein	0.888	0.128	0.464	2e-38
340728719	1370	PREDICTED: WD repeat-containing protein	0.818	0.118	0.496	3e-38
350415643	1397	PREDICTED: WD repeat-containing protein	0.818	0.115	0.490	5e-38
345481135	1370	PREDICTED: WD repeat-containing protein	0.828	0.119	0.479	7e-38
307172988	1241	WD repeat-containing protein 19 [Campono	0.838	0.133	0.479	9e-38
380023292	498	PREDICTED: WD repeat-containing protein	0.818	0.325	0.490	1e-37
332029303	1241	WD repeat-containing protein 19 [Acromyr	0.838	0.133	0.473	1e-37
344279333	1396	PREDICTED: WD repeat-containing protein	0.808	0.114	0.472	1e-36
327273245	1344	PREDICTED: WD repeat-containing protein	0.808	0.119	0.465	3e-36

>gi|307199281|gb|EFN79934.1| WD repeat-containing protein 19 [Harpegnathos saltator]

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 84/167 (50%), Positives = 113/167 (67%), Gaps = 3/167 (1%)

Query: 15   LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
            LYE A  ++KAA+ YI+LKNW K+GQLLP I SA   IQYAKAKE+ G Y E+  AYE A
Sbjct: 870  LYERAEYFDKAASAYIKLKNWHKVGQLLPQISSAKINIQYAKAKESEGKYEEAAKAYETA 929

Query: 75   EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
            +DYDN++R++L+HLN+   +V++V+  K  EGAK +A Y  K  D+ AAI FLILS C+ 
Sbjct: 930  KDYDNIIRINLEHLNNPARSVEVVQQTKSIEGAKMVAKYFQKMNDYNAAIKFLILSNCHD 989

Query: 135  DAFNLSQQHKKLHEFGKFLLEEDEPNPV---ELKRLAIHFEEDKGVL 178
            +AF L+ QH K+  +G+ L+   E   V   + K LA+HFE  K  L
Sbjct: 990  EAFQLANQHGKMELYGEILVNTIEDTNVRKEDFKSLAMHFESQKNNL 1036

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852095|ref|XP_003701564.1| PREDICTED: WD repeat-containing protein 19-like [Megachile rotundata]

 Score =  164 bits (415), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 85/183 (46%), Positives = 119/183 (65%), Gaps = 7/183 (3%)

Query: 15   LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
            LYE A  ++KAA+ YI+LKNW K+GQLLP I SA   IQYAKAKEA G Y E+  AYE A
Sbjct: 877  LYEKAEYFDKAASAYIKLKNWQKVGQLLPQISSAKINIQYAKAKEAEGKYDEAAKAYETA 936

Query: 75   EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
            +DY+N++R++L+HLN+   +V+IV+  K  EGAK +A Y  K  D+ +AI FLILS C+ 
Sbjct: 937  KDYENIIRINLEHLNNPARSVEIVQQTKSIEGAKMVAKYFQKLNDYNSAIKFLILSNCHD 996

Query: 135  DAFNLSQQHKKLHEFGKFL---LEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQS 187
            +AF L+ QH K+  +G+ L   +++      + K LA+HFE  K  L +    F   +  
Sbjct: 997  EAFQLANQHGKMELYGEILINAIDDSSERKEDFKSLAMHFESQKNNLLAGKYYFYAKEYQ 1056

Query: 188  RAM 190
            RA+
Sbjct: 1057 RAL 1059

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728719|ref|XP_003402665.1| PREDICTED: WD repeat-containing protein 19-like [Bombus terrestris]

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 82/165 (49%), Positives = 114/165 (69%), Gaps = 3/165 (1%)

Query: 15   LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
            LYE A  ++KAA+ YI+LKNW K+GQLLP I SA   IQYAKAKEA G Y E+  AYE A
Sbjct: 876  LYERAEYFDKAASAYIKLKNWQKVGQLLPQISSAKLNIQYAKAKEAEGKYEEAAKAYETA 935

Query: 75   EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
            +DY+N++R++L++LN+   +V+IV+  K  EGAK +A Y  K  D+ +AI FLILS C++
Sbjct: 936  KDYENIIRINLEYLNNPARSVEIVQQTKSIEGAKMVAKYFQKMNDYNSAIKFLILSNCHE 995

Query: 135  DAFNLSQQHKKLHEFGKFLLEE-DEPNPV--ELKRLAIHFEEDKG 176
            +AF L+ QH K+  +G+ L+   D+ N    + K LA+HFE  K 
Sbjct: 996  EAFQLANQHGKMELYGEILINTIDDSNARKEDFKSLAMHFESQKN 1040

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350415643|ref|XP_003490704.1| PREDICTED: WD repeat-containing protein 19-like [Bombus impatiens]

 Score =  162 bits (411), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 114/165 (69%), Gaps = 3/165 (1%)

Query: 15   LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
            LYE A  ++KAA+ YI+LKNW K+GQLLP I SA   IQYAKAKEA G Y E+  AYE A
Sbjct: 876  LYEKAEYFDKAASAYIKLKNWQKVGQLLPQISSAKLNIQYAKAKEAEGKYEEAAKAYETA 935

Query: 75   EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
            +DY+N++R++L++LN+   +V++V+  K  EGAK +A Y  K  D+ +AI FLILS C++
Sbjct: 936  KDYENIIRINLEYLNNPARSVEVVQQTKSIEGAKMVAKYFQKMNDYNSAIKFLILSNCHE 995

Query: 135  DAFNLSQQHKKLHEFGKFLLEE-DEPNPV--ELKRLAIHFEEDKG 176
            +AF L+ QH K+  +G+ L+   D+ N    + K LA+HFE  K 
Sbjct: 996  EAFQLANQHGKMELYGEILINTIDDSNARKEDFKSLAMHFESQKN 1040

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345481135|ref|XP_001606822.2| PREDICTED: WD repeat-containing protein 19-like [Nasonia vitripennis]

 Score =  162 bits (410), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 80/167 (47%), Positives = 112/167 (67%), Gaps = 3/167 (1%)

Query: 15   LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
            LYE A  ++KAA+ YI+LKNW K+GQLLP I +    IQYAKAKEA G Y E+  AYE A
Sbjct: 876  LYEKAEYFDKAASAYIKLKNWHKVGQLLPQISTPKINIQYAKAKEAEGKYEEAARAYETA 935

Query: 75   EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
            +DYDN++R++L+HLN+   +V++V+  K  EGAK +A +  K  D+ +AI FLILS C+ 
Sbjct: 936  KDYDNIIRINLEHLNNPARSVEVVQQTKSIEGAKMVARFFQKMNDYNSAIKFLILSNCHD 995

Query: 135  DAFNLSQQHKKLHEFGKFL---LEEDEPNPVELKRLAIHFEEDKGVL 178
            +AF L+ QH K+  +G+ L   +E+      + K LAI+FE  K  L
Sbjct: 996  EAFQLANQHSKMELYGEILAHTMEDGNVRKEDFKSLAIYFESQKNSL 1042

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307172988|gb|EFN64130.1| WD repeat-containing protein 19 [Camponotus floridanus]

 Score =  162 bits (409), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 81/169 (47%), Positives = 114/169 (67%), Gaps = 3/169 (1%)

Query: 15  LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
           LYE A  ++KAA+ YI+LK+W K+GQLLP I SA   IQYAKAKE+ G Y E+  AYE A
Sbjct: 750 LYEKAEYFDKAASAYIKLKSWHKVGQLLPQISSAKINIQYAKAKESEGKYEEAAKAYETA 809

Query: 75  EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
           +DYDN++R++L+HLN+   +V+IV+  K  EGAK +A Y  K  D+ +AI FLILS C+ 
Sbjct: 810 KDYDNIIRINLEHLNNPARSVEIVQETKSIEGAKMVARYFQKMNDYNSAIKFLILSNCHD 869

Query: 135 DAFNLSQQHKKLHEFGKFLLEEDEPNPV---ELKRLAIHFEEDKGVLTS 180
           +AF L+ QH K+  +G+ L+   +   V   + + LA+HFE  K  L +
Sbjct: 870 EAFQLANQHGKMELYGEILVNTIDDTNVRKEDFRSLAMHFESQKNNLLA 918

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380023292|ref|XP_003695458.1| PREDICTED: WD repeat-containing protein 19-like, partial [Apis florea]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/165 (49%), Positives = 113/165 (68%), Gaps = 3/165 (1%)

Query: 15  LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
           LYE A  ++KAA+ YI+LKNW K+GQLLP I SA   IQYAKAKE  G Y E+  AYE A
Sbjct: 8   LYEKAEYFDKAASAYIKLKNWPKVGQLLPQISSAKINIQYAKAKETEGKYEEAAKAYEIA 67

Query: 75  EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
           +DY+N++R++L++LN+   +V+IV+  K  EGAK +A Y  K  D+ +AI FLILS C++
Sbjct: 68  KDYENIIRINLEYLNNPARSVEIVQQTKSIEGAKMVAKYFQKMNDYNSAIKFLILSNCHE 127

Query: 135 DAFNLSQQHKKLHEFGKFLLEE-DEPNPV--ELKRLAIHFEEDKG 176
           +AF L+ QH K+  +G+ L+   D+ N    + K LA+HFE  K 
Sbjct: 128 EAFQLANQHGKMELYGEILINTIDDSNSRTEDFKSLAMHFESQKN 172

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332029303|gb|EGI69286.1| WD repeat-containing protein 19 [Acromyrmex echinatior]

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 114/169 (67%), Gaps = 3/169 (1%)

Query: 15  LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
           LYE +  ++KAA+ YI+LKNW K+GQLLP I SA   IQYAKAKE+ G Y E+  AYE A
Sbjct: 747 LYEKSEYFDKAASAYIKLKNWHKVGQLLPQISSAKINIQYAKAKESEGKYEEAAKAYETA 806

Query: 75  EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
           +DYDN++R++L++LN+   +V++V+  K  EGAK IA Y  K  D+ +AI FLILS C+ 
Sbjct: 807 KDYDNIIRINLEYLNNPARSVEVVQQTKSIEGAKMIAKYFQKMNDYNSAIKFLILSNCHD 866

Query: 135 DAFNLSQQHKKLHEFGKFLLEEDEPNPV---ELKRLAIHFEEDKGVLTS 180
           +AF L+ QH K+  +G+ L+   +   V   + + LA+HFE  K  L +
Sbjct: 867 EAFQLANQHGKMELYGEILVNTIDDTNVRKEDFRSLAMHFESQKNNLLA 915

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|344279333|ref|XP_003411443.1| PREDICTED: WD repeat-containing protein 19 [Loxodonta africana]

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 76/161 (47%), Positives = 111/161 (68%), Gaps = 1/161 (0%)

Query: 15   LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
            LYE    Y+KAA+ YI+ KNW K+G+LLPH+ S    +QYAKAKEA G Y+E+V AYE A
Sbjct: 916  LYEKGLYYDKAASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVAAYENA 975

Query: 75   EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
            + +++V+R+ LDHLN+   AV IV+  K  +GAK +A +  + GD+G+AI FL++SKC  
Sbjct: 976  KQWNSVIRIYLDHLNNPEKAVSIVRETKSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNN 1035

Query: 135  DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
            +AF L+QQH K+  +   +  ED  N  + + +A+HFE +K
Sbjct: 1036 EAFTLAQQHNKMEIYADIIGSEDTTNE-DYQSIALHFEGEK 1075

Source: Loxodonta africana

Species: Loxodonta africana

Genus: Loxodonta

Family: Elephantidae

Order: Proboscidea

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|327273245|ref|XP_003221391.1| PREDICTED: WD repeat-containing protein 19-like [Anolis carolinensis]

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 75/161 (46%), Positives = 111/161 (68%), Gaps = 1/161 (0%)

Query: 15   LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
            LYE    Y+KAA+ YI+ KNW K+G+LLPH+ S    +QYAKAKEA G Y+E+V AYE A
Sbjct: 864  LYEKGQYYDKAASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVLAYENA 923

Query: 75   EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
            + +DNV+R+ LDHLN+   AV +V+  +  +GAK +A +  + GD+G+AI FL++SKC  
Sbjct: 924  KQWDNVIRLYLDHLNNPEKAVSVVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNN 983

Query: 135  DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
            +AF L+QQH K+  +   +  ED  N  + + +A++FE +K
Sbjct: 984  EAFTLAQQHNKMEIYADIISSEDTTNE-DYQSIALYFEGEK 1023

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	198
UNIPROTKB|B4DGR6	1182	WDR19 "WD repeat-containing pr	0.883	0.148	0.438	4.2e-35
RGD|1306997	1340	Wdr19 "WD repeat domain 19" [R	0.808	0.119	0.459	5.2e-35
MGI|MGI:2443231	1341	Wdr19 "WD repeat domain 19" [M	0.808	0.119	0.459	5.2e-35
UNIPROTKB|Q8NEZ3	1342	WDR19 "WD repeat-containing pr	0.883	0.130	0.438	5.2e-35
UNIPROTKB|E1C1Y1	1342	WDR19 "Uncharacterized protein	0.808	0.119	0.453	6.6e-35
UNIPROTKB|E1B7Q4	1342	WDR19 "Uncharacterized protein	0.808	0.119	0.459	1.1e-34
UNIPROTKB|F1Q2A8	1338	WDR19 "Uncharacterized protein	0.808	0.119	0.447	1.3e-33
UNIPROTKB|I3LLZ8	1330	WDR19 "Uncharacterized protein	0.808	0.120	0.447	3.3e-33
WB|WBGene00001118	1383	dyf-2 [Caenorhabditis elegans	0.782	0.112	0.388	3.3e-25
FB|FBgn0034452	1366	Oseg6 "Oseg6" [Drosophila mela	0.828	0.120	0.390	3.1e-24

UNIPROTKB|B4DGR6 WDR19 "WD repeat-containing protein 19" [Homo sapiens (taxid:9606)]

 Score = 392 (143.0 bits), Expect = 4.2e-35, P = 4.2e-35
 Identities = 79/180 (43%), Positives = 118/180 (65%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE    Y+KAA+ YI+ KNW K+G LLPH+ S    +QYAKAKEA G Y+E+V AYE A
Sbjct:   702 LYEKGLYYDKAASVYIRSKNWAKVGDLLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENA 761

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
             + + +V+R+ LDHLN+   AV+IV+  +  +GAK +A +  + GD+G+AI FL++SKC  
Sbjct:   762 KQWQSVIRIYLDHLNNPEKAVNIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNN 821

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRV----SQQSRAM 190
             +AF L+QQH K+  +   +  ED  N  + + +A++FE +K  L + +      Q SRA+
Sbjct:   822 EAFTLAQQHNKMEIYADIIGSEDTTNE-DYQSIALYFEGEKRYLQAGKFFLLCGQYSRAL 880

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0061055 "myotome development" evidence=IEA

RGD|1306997 Wdr19 "WD repeat domain 19" [Rattus norvegicus (taxid:10116)]

 Score = 392 (143.0 bits), Expect = 5.2e-35, P = 5.2e-35
 Identities = 74/161 (45%), Positives = 111/161 (68%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE    Y++AA+ YI+ KNW K+G+LLPH+ S    +QYAKAKEA G Y+E+V AYE A
Sbjct:   861 LYEKGQYYDRAASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENA 920

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
             + +++V+R+ LDHLN+   AV IV+  +  +GAK +A +  + GD+G+AI FL+LSKC  
Sbjct:   921 KQWNSVIRIYLDHLNNPEKAVSIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVLSKCNN 980

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
             +AF L+QQH K+  +   +  ED  N  + + +A++FE +K
Sbjct:   981 EAFTLAQQHNKMEIYADIIGAEDTTNE-DYQSIALYFEGEK 1020

GO:0000902 "cell morphogenesis" evidence=ISO

GO:0001701 "in utero embryonic development" evidence=IEA;ISO

GO:0005929 "cilium" evidence=ISO

GO:0007224 "smoothened signaling pathway" evidence=ISO

GO:0030326 "embryonic limb morphogenesis" evidence=IEA;ISO

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0031076 "embryonic camera-type eye development" evidence=IEA;ISO

GO:0031513 "nonmotile primary cilium" evidence=ISO

GO:0031514 "motile cilium" evidence=IEA;ISO

GO:0032391 "photoreceptor connecting cilium" evidence=IEA;ISO

GO:0042384 "cilium assembly" evidence=IEA;ISO

GO:0042471 "ear morphogenesis" evidence=IEA;ISO

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA;ISO

GO:0050877 "neurological system process" evidence=IEA;ISO

GO:0055123 "digestive system development" evidence=IEA;ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA;ISO

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA;ISO

GO:0061055 "myotome development" evidence=IEA;ISO

MGI|MGI:2443231 Wdr19 "WD repeat domain 19" [Mus musculus (taxid:10090)]

 Score = 392 (143.0 bits), Expect = 5.2e-35, P = 5.2e-35
 Identities = 74/161 (45%), Positives = 111/161 (68%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE    Y++AA+ YI+ KNW K+G+LLPH+ S    +QYAKAKEA G Y+E+V AYE A
Sbjct:   862 LYEKGQYYDRAASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENA 921

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
             + +++V+R+ LDHLN+   AV IV+  +  +GAK +A +  + GD+G+AI FL+LSKC  
Sbjct:   922 KQWNSVIRIYLDHLNNPEKAVSIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVLSKCNN 981

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
             +AF L+QQH K+  +   +  ED  N  + + +A++FE +K
Sbjct:   982 EAFTLAQQHNKMEIYADIIGAEDTTNE-DYQSIALYFEGEK 1021

GO:0000902 "cell morphogenesis" evidence=IMP

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005929 "cilium" evidence=IDA

GO:0007224 "smoothened signaling pathway" evidence=IMP

GO:0030030 "cell projection organization" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IMP

GO:0030991 "intraflagellar transport particle A" evidence=ISO

GO:0031076 "embryonic camera-type eye development" evidence=IMP

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0031514 "motile cilium" evidence=IDA

GO:0032391 "photoreceptor connecting cilium" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0042471 "ear morphogenesis" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IMP

GO:0050877 "neurological system process" evidence=IMP

GO:0055123 "digestive system development" evidence=IMP

GO:0060271 "cilium morphogenesis" evidence=IGI;IMP

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IGI

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IGI;IMP

GO:0061055 "myotome development" evidence=IMP

UNIPROTKB|Q8NEZ3 WDR19 "WD repeat-containing protein 19" [Homo sapiens (taxid:9606)]

 Score = 392 (143.0 bits), Expect = 5.2e-35, P = 5.2e-35
 Identities = 79/180 (43%), Positives = 118/180 (65%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE    Y+KAA+ YI+ KNW K+G LLPH+ S    +QYAKAKEA G Y+E+V AYE A
Sbjct:   862 LYEKGLYYDKAASVYIRSKNWAKVGDLLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENA 921

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
             + + +V+R+ LDHLN+   AV+IV+  +  +GAK +A +  + GD+G+AI FL++SKC  
Sbjct:   922 KQWQSVIRIYLDHLNNPEKAVNIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNN 981

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRV----SQQSRAM 190
             +AF L+QQH K+  +   +  ED  N  + + +A++FE +K  L + +      Q SRA+
Sbjct:   982 EAFTLAQQHNKMEIYADIIGSEDTTNE-DYQSIALYFEGEKRYLQAGKFFLLCGQYSRAL 1040

GO:0005737 "cytoplasm" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0061055 "myotome development" evidence=IEA

GO:0005932 "microtubule basal body" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=ISS

GO:0031513 "nonmotile primary cilium" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0030991 "intraflagellar transport particle A" evidence=IDA

UNIPROTKB|E1C1Y1 WDR19 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 391 (142.7 bits), Expect = 6.6e-35, P = 6.6e-35
 Identities = 73/161 (45%), Positives = 110/161 (68%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE    Y+KAA+ YI+ KNW K+G+LLPH+ S    +QYAKAKEA G Y+E+  AYE A
Sbjct:   862 LYEKGQYYDKAASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAAVAYENA 921

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
             + +D+V+R+ LDHLN+   AV+IV+  +  +GAK +A +  + GD+G+AI FL++SKC  
Sbjct:   922 KQWDSVIRLCLDHLNNPERAVNIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNN 981

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
             +AF L+QQH K+  +   +  E   N  + + +A++FE +K
Sbjct:   982 EAFTLAQQHNKMEIYADIITSESTSNE-DYQSVALYFEGEK 1021

GO:0001701 "in utero embryonic development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0061055 "myotome development" evidence=IEA

UNIPROTKB|E1B7Q4 WDR19 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 389 (142.0 bits), Expect = 1.1e-34, P = 1.1e-34
 Identities = 74/161 (45%), Positives = 111/161 (68%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE    Y+KAA+ YI+ KNW K+G+LLPH+ S    +QYAKAKEA G Y+E+V AYE A
Sbjct:   862 LYEKGLYYDKAASVYIRCKNWAKVGELLPHVSSPKIHLQYAKAKEADGRYKEAVVAYENA 921

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
             + +++V+R+ LDHLN+   AV IV+  +  EGAK +A +  + GD+G+AI FL++SKC  
Sbjct:   922 KQWNSVIRIYLDHLNNPEKAVSIVRETQSLEGAKLVARFFLQLGDYGSAIQFLVISKCNN 981

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
             +AF L+QQH K+  +   +  E+  N  + + +A++FE +K
Sbjct:   982 EAFTLAQQHNKMEIYADIIGSENTTNE-DYQSIALYFEGEK 1021

GO:0061055 "myotome development" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|F1Q2A8 WDR19 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 379 (138.5 bits), Expect = 1.3e-33, P = 1.3e-33
 Identities = 72/161 (44%), Positives = 110/161 (68%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE    ++KAA+ YI+ KNW K+G+LLP + S    +QYAKAKEA G Y+E+V AYE A
Sbjct:   859 LYEKGLYFDKAASVYIRCKNWAKVGELLPRVASPKIHLQYAKAKEADGRYKEAVVAYENA 918

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
             + +++V+R+ LDHLN+   AV IV+  +  +GAK +A +  + GD+G+AI FL++SKC  
Sbjct:   919 KQWNSVIRIYLDHLNNPEKAVSIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNN 978

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
             +AF L+QQH K+  +   +  ED  N  + + +A++FE +K
Sbjct:   979 EAFTLAQQHNKMEIYADIIGSEDTTNE-DYQSIALYFEGEK 1018

GO:0061055 "myotome development" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

UNIPROTKB|I3LLZ8 WDR19 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 375 (137.1 bits), Expect = 3.3e-33, P = 3.3e-33
 Identities = 72/161 (44%), Positives = 110/161 (68%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE    Y+KAA+ YI+ KNW K+G+LLPH+ S    +Q+AKAKEA G Y+E+V AYE A
Sbjct:   850 LYEKGLYYDKAASVYIRCKNWAKVGELLPHVSSPKIHLQFAKAKEADGRYKEAVVAYENA 909

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
             + +++V+R+ LDHLN+   AV IV+  +  +GAK +A +  + GD+G+AI FL++SKC  
Sbjct:   910 KQWNSVIRIYLDHLNNPEKAVRIVRETQSLDGAKMVARFFLQLGDYGSAIQFLVMSKCNN 969

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK 175
             +AF L+QQH K+  +   +   D  N  + + +A++FE +K
Sbjct:   970 EAFTLAQQHNKMEIYVDVIGSGDTTNE-DYQSIALYFEGEK 1009

GO:0061055 "myotome development" evidence=IEA

GO:0060831 "smoothened signaling pathway involved in dorsal/ventral neural tube patterning" evidence=IEA

GO:0060830 "ciliary receptor clustering involved in smoothened signaling pathway" evidence=IEA

GO:0055123 "digestive system development" evidence=IEA

GO:0050877 "neurological system process" evidence=IEA

GO:0048701 "embryonic cranial skeleton morphogenesis" evidence=IEA

GO:0042471 "ear morphogenesis" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0032391 "photoreceptor connecting cilium" evidence=IEA

GO:0031514 "motile cilium" evidence=IEA

GO:0031076 "embryonic camera-type eye development" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0001701 "in utero embryonic development" evidence=IEA

WB|WBGene00001118 dyf-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 292 (107.8 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
 Identities = 61/157 (38%), Positives = 92/157 (58%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE    Y++AA   ++   W K+G+LL H+KS    IQY K  E    Y+ +V  YE  
Sbjct:   907 LYEVGLFYDRAAAVCLKANAWAKVGELLDHVKSPKIHIQYGKIMEKEKKYKVAVKCYETG 966

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
              DYDN VR+ LD LND   AV +V+  +  EGAK +A +  K GD+ +AI FL++S+C Q
Sbjct:   967 RDYDNQVRLLLDPLNDPDEAVRVVRESRSIEGAKLVAKFFVKLGDYNSAIQFLVMSQCVQ 1026

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHF 171
             +AF L++++  + E+ K +  E   N  +   LA ++
Sbjct:  1027 EAFELAEKNNAVREYAKAI--EQHGNISQALELAEYY 1061

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0042048 "olfactory behavior" evidence=IMP

GO:0006935 "chemotaxis" evidence=IMP

GO:0007635 "chemosensory behavior" evidence=IMP

GO:0031513 "nonmotile primary cilium" evidence=IDA

GO:0042073 "intraflagellar transport" evidence=IDA

GO:0035058 "nonmotile primary cilium assembly" evidence=IMP

GO:0030992 "intraflagellar transport particle B" evidence=IDA

GO:0008104 "protein localization" evidence=IMP

FB|FBgn0034452 Oseg6 "Oseg6" [Drosophila melanogaster (taxid:7227)]

 Score = 291 (107.5 bits), Expect = 3.1e-24, P = 3.1e-24
 Identities = 64/164 (39%), Positives = 89/164 (54%)

Query:    15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA 74
             LYE  G Y++A   YI LK W K   +LP +KS      YAKAKE  G Y E++ +Y  A
Sbjct:   879 LYERGGFYDEACGHYIALKMWNKANNILPKVKSTKLHAAYAKAKENDGHYEEAIRSYRIA 938

Query:    75 EDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ 134
              D D  VR+ LDHL D   A +IV   +  + AK +A +  K GD   A+ FL++  C +
Sbjct:   939 GDLDACVRIYLDHLCDPHAASEIVLESRSMDSAKLLAKFYQKIGDVEQALQFLVICGCVE 998

Query:   135 DAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVL 178
             +AF L+Q+H KL   G+ L   +     +   LA +FE +K  L
Sbjct:   999 EAFALAQRHNKLRRHGELLERYENAKSSDYLALAHYFEGEKYTL 1042


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.134   0.411    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      198       198   0.00083  111 3  11 22  0.47    32
                                                     31  0.45    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  10
  No. of states in DFA:  607 (65 KB)
  Total size of DFA:  186 KB (2107 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.78u 0.06s 19.84t   Elapsed:  00:00:27
  Total cpu time:  19.79u 0.06s 19.85t   Elapsed:  00:00:27
  Start:  Thu Aug 15 13:38:23 2013   End:  Thu Aug 15 13:38:50 2013

GO:0035058 "nonmotile primary cilium assembly" evidence=ISS

GO:0042384 "cilium assembly" evidence=ISM;IEP

GO:0031513 "nonmotile primary cilium" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	198
KOG3617|consensus	1416		99.95
KOG3617|consensus	1416		99.93
KOG3616|consensus	1636		99.84
KOG1538|consensus	1081		99.82
KOG2041|consensus	1189		99.79
KOG3616|consensus	1636		99.77
KOG2041|consensus	1189		99.66
KOG1538|consensus	1081		99.59
KOG1920|consensus	1265		99.1
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.97
KOG1586|consensus	288		98.9
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.77
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.75
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.7
PLN03218	1060	maturation of RBCL 1; Provisional	98.67
PLN03218	1060	maturation of RBCL 1; Provisional	98.66
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.66
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.65
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.64
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.62
KOG2247|consensus	615		98.61
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.61
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.6
PLN03077	857	Protein ECB2; Provisional	98.55
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	98.54
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.54
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.51
KOG0985|consensus	1666		98.49
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.48
PLN03077	857	Protein ECB2; Provisional	98.44
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.4
KOG0276|consensus	794		98.35
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.34
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.31
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.3
KOG2003|consensus	840		98.27
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	98.23
KOG1920|consensus	1265		98.21
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.2
KOG4626|consensus	966		98.18
KOG1840|consensus	508		98.12
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.1
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	98.07
KOG4626|consensus	966		98.04
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	98.0
KOG0985|consensus	1666		97.95
KOG1840|consensus	508		97.94
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.91
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	97.88
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	97.82
PRK11189	296	lipoprotein NlpI; Provisional	97.81
KOG0276|consensus	794		97.8
KOG1586|consensus	288		97.79
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	97.7
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.69
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.65
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	97.63
KOG2003|consensus	840		97.6
smart00299	140	CLH Clathrin heavy chain repeat homology.	97.57
PRK12370	553	invasion protein regulator; Provisional	97.53
KOG1585|consensus	308		97.5
KOG2114|consensus	933		97.49
PRK15359	144	type III secretion system chaperone protein SscB;	97.48
PRK10803	263	tol-pal system protein YbgF; Provisional	97.42
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	97.4
smart00299	140	CLH Clathrin heavy chain repeat homology.	97.28
PRK12370	553	invasion protein regulator; Provisional	97.24
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.23
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	97.23
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.2
KOG2114|consensus	933		97.19
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	97.18
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.18
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.16
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	97.15
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.15
KOG1126|consensus	638		97.13
PRK10370	198	formate-dependent nitrite reductase complex subuni	97.11
KOG1585|consensus	308		97.09
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	97.09
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.09
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	97.08
PRK15359	144	type III secretion system chaperone protein SscB;	97.05
KOG1155|consensus	559		96.97
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	96.96
KOG0547|consensus	606		96.96
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.92
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	96.85
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	96.76
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	96.74
COG4783	484	Putative Zn-dependent protease, contains TPR repea	96.72
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	96.7
KOG1155|consensus	559		96.7
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.67
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.65
PF12688	120	TPR_5: Tetratrico peptide repeat	96.62
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	96.6
KOG2376|consensus	652		96.6
PF12688	120	TPR_5: Tetratrico peptide repeat	96.54
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	96.53
KOG1126|consensus	638		96.52
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	96.51
KOG1524|consensus	737		96.47
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	96.45
TIGR02552	135	LcrH_SycD type III secretion low calcium response	96.45
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.42
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	96.42
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.31
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	96.3
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	96.3
KOG0547|consensus	606		96.3
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.29
KOG2002|consensus	1018		96.27
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	96.25
KOG0495|consensus	913		96.24
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	96.12
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	96.0
KOG0553|consensus	304		95.99
PRK14720	906	transcript cleavage factor/unknown domain fusion p	95.99
KOG1129|consensus	478		95.95
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	95.95
KOG2076|consensus	895		95.95
PRK14574	822	hmsH outer membrane protein; Provisional	95.92
KOG1125|consensus	579		95.89
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	95.88
KOG2076|consensus	895		95.87
KOG2247|consensus	615		95.87
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	95.86
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.84
PRK14574	822	hmsH outer membrane protein; Provisional	95.83
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	95.82
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.82
PRK11189	296	lipoprotein NlpI; Provisional	95.81
KOG1128|consensus	777		95.8
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	95.74
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.72
PF12931	284	Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_	95.69
KOG0686|consensus	466		95.54
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	95.52
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	95.41
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	95.36
KOG1173|consensus	611		95.34
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	95.32
PRK10370	198	formate-dependent nitrite reductase complex subuni	95.31
KOG1173|consensus	611		95.27
KOG0543|consensus	397		95.27
KOG0292|consensus	1202		95.24
PRK10803	263	tol-pal system protein YbgF; Provisional	95.24
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.23
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	95.2
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	95.17
PF13371	73	TPR_9: Tetratricopeptide repeat	95.1
KOG1129|consensus	478		95.07
KOG2005|consensus	878		95.05
PRK04841	903	transcriptional regulator MalT; Provisional	94.86
COG5110	881	RPN1 26S proteasome regulatory complex component [	94.76
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	94.74
KOG3785|consensus	557		94.67
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	94.63
KOG0553|consensus	304		94.46
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	94.44
KOG0548|consensus	539		94.42
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	94.4
PRK15331	165	chaperone protein SicA; Provisional	94.33
PRK04841	903	transcriptional regulator MalT; Provisional	94.26
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.23
PF13428	44	TPR_14: Tetratricopeptide repeat	94.05
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.05
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	93.89
KOG3060|consensus	289		93.87
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	93.74
PRK15331	165	chaperone protein SicA; Provisional	93.7
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	93.62
KOG1130|consensus	639		93.58
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	93.5
KOG2066|consensus	846		93.49
KOG2168|consensus	835		93.49
PRK14720	906	transcript cleavage factor/unknown domain fusion p	93.48
KOG0624|consensus	504		93.28
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	93.27
KOG0550|consensus	486		93.25
KOG2376|consensus	652		93.03
KOG0307|consensus	1049		92.88
KOG2066|consensus	846		92.35
KOG2280|consensus	829		92.34
KOG2002|consensus	1018		92.32
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.3
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	92.29
KOG2168|consensus	835		92.2
COG4783	484	Putative Zn-dependent protease, contains TPR repea	92.11
PF13371	73	TPR_9: Tetratricopeptide repeat	91.88
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	91.69
KOG0543|consensus	397		91.52
KOG1064|consensus	2439		91.47
KOG1127|consensus	1238		91.42
KOG4162|consensus	799		91.36
PF13428	44	TPR_14: Tetratricopeptide repeat	91.23
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.16
KOG1174|consensus	564		90.85
PF12931	284	Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_	90.76
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	90.52
KOG0307|consensus	1049		90.43
KOG2005|consensus	878		90.33
COG5110	881	RPN1 26S proteasome regulatory complex component [	90.23
KOG2034|consensus	911		89.85
KOG4121|consensus	1128		89.58
COG4700	251	Uncharacterized protein conserved in bacteria cont	89.43
PF03704	146	BTAD: Bacterial transcriptional activator domain;	89.19
KOG1125|consensus	579		89.13
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	88.79
KOG2280|consensus	829		88.48
PF13431	34	TPR_17: Tetratricopeptide repeat	88.47
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	88.27
KOG1174|consensus	564		88.24
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	88.18
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	88.1
KOG4340|consensus	459		87.71
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.58
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	87.44
KOG2300|consensus	629		87.33
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	87.27
PF04190	260	DUF410: Protein of unknown function (DUF410) ; Int	87.14
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	86.86
KOG1915|consensus	677		86.71
PF13512	142	TPR_18: Tetratricopeptide repeat	86.5
KOG4162|consensus	799		86.39
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	86.39
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	86.24
KOG3081|consensus	299		86.18
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	86.13
KOG2047|consensus	835		85.93
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	85.78
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	85.73
PF10366	108	Vps39_1: Vacuolar sorting protein 39 domain 1; Int	85.07
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	84.8
KOG3785|consensus	557		84.68
KOG2034|consensus	911		84.6
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	84.43
PF12854	34	PPR_1: PPR repeat	84.32
PRK11619	644	lytic murein transglycosylase; Provisional	84.25
PF13934	226	ELYS: Nuclear pore complex assembly	84.03
KOG0687|consensus	393		83.45
KOG0495|consensus	913		83.4
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	83.16
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	83.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	83.02
KOG1156|consensus	700		82.86
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	82.79
KOG2047|consensus	835		82.43
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	82.37
KOG0624|consensus	504		82.35
PF04212	69	MIT: MIT (microtubule interacting and transport) d	81.93
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	81.8
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	81.77
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	80.85
KOG1524|consensus	737		80.76
KOG3060|consensus	289		80.67
KOG1128|consensus	777		80.27

>KOG3617|consensus

Probab=99.95  E-value=2.4e-27  Score=210.47  Aligned_cols=188  Identities=15%  Similarity=0.232  Sum_probs=169.0

Q ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh------------------------------------------
Q psy12373          6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP------------------------------------------   43 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~------------------------------------------   43 (198)
                      +|+.++|..+|.+|.++|..-.+|...|.|+.|.+++.                                          
T Consensus       813 LgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~  892 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVF  892 (1416)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHH
Confidence            47788888888888888888888888888887666654                                          


Q ss_pred             ---------------ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHH
Q psy12373         44 ---------------HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAK  108 (198)
Q Consensus        44 ---------------~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~  108 (198)
                                     +..++.|+.|||+++|+.|+.+.|+.+|.+|.||-+.||+.| ..|+.++|.+|++++++..+.+
T Consensus       893 rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C-~qGk~~kAa~iA~esgd~AAcY  971 (1416)
T KOG3617|consen  893 RMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKC-IQGKTDKAARIAEESGDKAACY  971 (1416)
T ss_pred             HHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEe-eccCchHHHHHHHhcccHHHHH
Confidence                           234788999999999999999999999999999999999999 9999999999999999999999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCC-ChhhH----Hhc
Q psy12373        109 RIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK-GVLTS----FRV  183 (198)
Q Consensus       109 ~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g-~~~~A----~~a  183 (198)
                      ++|++|++.|++.+||.||.+|..+..|||||+++++-|.+..   |...+.|+.....|+|||+.| +..+|    ++|
T Consensus       972 hlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~n---lal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkA 1048 (1416)
T KOG3617|consen  972 HLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLAN---LALMSGGSDLVSAARYYEELGGYAHKAVMLYHKA 1048 (1416)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH---HHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhh
Confidence            9999999999999999999999999999999999998855444   566778899999999999999 88889    999


Q ss_pred             CChhhHHhhhhhcC
Q psy12373        184 SQQSRAMPCSSGHH  197 (198)
Q Consensus       184 g~~~~Al~l~~~~~  197 (198)
                      |.+.+|++|.|..+
T Consensus      1049 Gm~~kALelAF~tq 1062 (1416)
T KOG3617|consen 1049 GMIGKALELAFRTQ 1062 (1416)
T ss_pred             cchHHHHHHHHhhc
Confidence            99999999998753

>KOG3617|consensus

Probab=99.93  E-value=2.4e-25  Score=197.93  Aligned_cols=189  Identities=16%  Similarity=0.179  Sum_probs=162.5

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHH-------------HHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWT-------------KIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~-------------~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      .+|...++|.+..|+.|-|+..|..+++|.             +|.++++...|+..++++|+++|+.|++.+|+++|.+
T Consensus       913 ~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTr  992 (1416)
T KOG3617|consen  913 SLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTR  992 (1416)
T ss_pred             HHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            356666667777777777777776666655             5777888888999999999999999999999999999


Q ss_pred             hcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhh
Q psy12373         74 AEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHG-DFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKF  152 (198)
Q Consensus        74 a~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g-~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~  152 (198)
                      |..+.+|||+|. ..+.-|+...++..++..+ ....|+||+..| ..+.||.+|+|||.+.+|++||....++..+.-|
T Consensus       993 AqafsnAIRlcK-End~~d~L~nlal~s~~~d-~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lI 1070 (1416)
T KOG3617|consen  993 AQAFSNAIRLCK-ENDMKDRLANLALMSGGSD-LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLI 1070 (1416)
T ss_pred             HHHHHHHHHHHH-hcCHHHHHHHHHhhcCchh-HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHH
Confidence            999999999999 5566677999998765444 557899999998 7899999999999999999999999998765544


Q ss_pred             h-hhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhhcC
Q psy12373        153 L-LEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSGHH  197 (198)
Q Consensus       153 ~-~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~~~  197 (198)
                      . .|.+.++|+++.++|.+|+++.+|++|    .++.+++.|+.+|.+.|
T Consensus      1071 a~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~n 1120 (1416)
T KOG3617|consen 1071 AKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRN 1120 (1416)
T ss_pred             HHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            4 478899999999999999999999999    89999999999999876

>KOG3616|consensus

Probab=99.84  E-value=2.5e-20  Score=164.97  Aligned_cols=191  Identities=16%  Similarity=0.098  Sum_probs=171.9

Q ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH
Q psy12373          6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR   82 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~   82 (198)
                      .|+|.+|.++|...|.|++||.||-+-|..+.+.||+.+..   -.+.+.++|..+|..|+...|.+.|.++|+|+.+|+
T Consensus       837 hgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea~d~kaavn  916 (1636)
T KOG3616|consen  837 HGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEAGDFKAAVN  916 (1636)
T ss_pred             hcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhhhhHHHHHH
Confidence            37999999999999999999999999999999999997654   456778999999999999999999999999999999


Q ss_pred             HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc-CCCCH
Q psy12373         83 VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNP  161 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~-~~~~~  161 (198)
                      ||. ..+.|++|.++++..+.....++++-.+.++---+.||+++-+.|-...|+..+.+.+.|+...++.+++ ++..|
T Consensus       917 myk-~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k~~  995 (1636)
T KOG3616|consen  917 MYK-ASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDKMG  995 (1636)
T ss_pred             Hhh-hhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhccCc
Confidence            999 7899999999999877777777777777776666899999999999999999999999999888887776 68899


Q ss_pred             HHHHHHHHHHHhCCChhhH-----------------------------HhcC-ChhhHHhhhhhcC
Q psy12373        162 VELKRLAIHFEEDKGVLTS-----------------------------FRVS-QQSRAMPCSSGHH  197 (198)
Q Consensus       162 ~~~~~~A~~~e~~g~~~~A-----------------------------~~ag-~~~~Al~l~~~~~  197 (198)
                      ++++++|.++|++|+++.|                             +++| ++++|+.|....+
T Consensus       996 ~vhlk~a~~ledegk~edaskhyveaiklntynitwcqavpsrfd~e~ir~gnkpe~av~mfi~dn 1061 (1636)
T KOG3616|consen  996 EVHLKLAMFLEDEGKFEDASKHYVEAIKLNTYNITWCQAVPSRFDAEFIRAGNKPEEAVEMFIHDN 1061 (1636)
T ss_pred             cchhHHhhhhhhccchhhhhHhhHHHhhcccccchhhhcccchhhHHHHHcCCChHHHHHHhhhcc
Confidence            9999999999999999887                             6777 8999999887654

>KOG1538|consensus

Probab=99.82  E-value=1.4e-19  Score=158.22  Aligned_cols=176  Identities=13%  Similarity=0.141  Sum_probs=157.4

Q ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH
Q psy12373          6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR   82 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~   82 (198)
                      .|+|.||+++|.++|.-.+|++||.++++|+.+.+.+..-+   .+.+.+.-|.|..+.++...|.++.+.+|+..+|+.
T Consensus       645 ~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~  724 (1081)
T KOG1538|consen  645 QGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIE  724 (1081)
T ss_pred             hhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhh
Confidence            48999999999999999999999999999999999997655   466888999999999999999999999999999999


Q ss_pred             HHhhccCCHHHHHHHHHhcCCH--HHHHHHH-------------HHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhh
Q psy12373         83 VDLDHLNDIRHAVDIVKAKKCT--EGAKRIA-------------DYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLH  147 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~~~~~--~~~~~~A-------------~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~  147 (198)
                      ++. ..|+.|-++.|+++....  +....+|             +.|.+.||..+.|++.+.+++|++||++|..|+.+ 
T Consensus       725 i~~-d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlHve~~~W~eAFalAe~hPe~-  802 (1081)
T KOG1538|consen  725 ICG-DHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLHVETQRWDEAFALAEKHPEF-  802 (1081)
T ss_pred             hhh-cccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhheeecccchHhHhhhhhCccc-
Confidence            999 668888899999976543  3344444             45678999999999999999999999999999876 


Q ss_pred             HHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhh
Q psy12373        148 EFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSG  195 (198)
Q Consensus       148 ~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~  195 (198)
                                  .|++|...|+++.+..+|++|    ++||+-.+|++++.+
T Consensus       803 ------------~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQ  842 (1081)
T KOG1538|consen  803 ------------KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQ  842 (1081)
T ss_pred             ------------cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHH
Confidence                        568899999999999999999    999999999998764

>KOG2041|consensus

Probab=99.79  E-value=3.9e-18  Score=150.28  Aligned_cols=191  Identities=13%  Similarity=0.068  Sum_probs=164.5

Q ss_pred             cccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---C----hHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373          4 GALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---S----ATTFIQYAKAKEAMGSYRESVGAYERAED   76 (198)
Q Consensus         4 ~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~   76 (198)
                      +++|.|++|.++|..+.+-|.||+++.++|+|.++.+|++.-+   +    ......+|.+|..+..|++|.++|.++|+
T Consensus       745 ~~~g~feeaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~  824 (1189)
T KOG2041|consen  745 AFYGEFEEAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD  824 (1189)
T ss_pred             hhhcchhHhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            4668999999999999999999999999999999999998532   2    23556789999999999999999999999


Q ss_pred             HHHHHHHHhhccCCHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh-h
Q psy12373         77 YDNVVRVDLDHLNDIRHAVDIVKAKKCTE-GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL-L  154 (198)
Q Consensus        77 ~~~av~l~~~~~~~~~~a~~l~~~~~~~~-~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~-~  154 (198)
                      .++.++++. +++++++...+++..|+.. ....+|+.|.+.|+.++||+.|.+.+.+..|+.-|...+++....++. +
T Consensus       825 ~e~~~ecly-~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  825 TENQIECLY-RLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQR  903 (1189)
T ss_pred             hHhHHHHHH-HHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999 9999999999999988644 445789999999999999999999999999988888888875555543 1


Q ss_pred             hcCCCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhh
Q psy12373        155 EEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSG  195 (198)
Q Consensus       155 l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~  195 (198)
                      -..+..+.+..+.|.+|...++..+|    .+||.+-+|.+|+++
T Consensus       904 ~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q  948 (1189)
T KOG2041|consen  904 FQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ  948 (1189)
T ss_pred             ccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence            23344566777777888999999999    999999999999875

>KOG3616|consensus

Probab=99.77  E-value=7.6e-18  Score=149.45  Aligned_cols=190  Identities=16%  Similarity=0.208  Sum_probs=164.8

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRV   83 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l   83 (198)
                      .+|+.|+.+|++-.|+++|++||.+..-|-++.+|++-.-   ...+-..||.+++..|+++.|+.+|+.+++..+||+.
T Consensus       662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kaiea  741 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAIEA  741 (1636)
T ss_pred             HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHH
Confidence            5799999999999999999999999999999999887432   5567789999999999999999999999999999999


Q ss_pred             HhhccCCHHHHHHHHHhcCCHHHH----HHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh--hhcC
Q psy12373         84 DLDHLNDIRHAVDIVKAKKCTEGA----KRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL--LEED  157 (198)
Q Consensus        84 ~~~~~~~~~~a~~l~~~~~~~~~~----~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~--~l~~  157 (198)
                      .+ ...+|.+|+.|+....+....    -.+|++|.+.|+|+-|.++|.+++.+.+|+.|+-+.|++.....+.  ..++
T Consensus       742 ai-~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~kw~da~kla~e~~~~  820 (1636)
T KOG3616|consen  742 AI-GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGKWEDAFKLAEECHGP  820 (1636)
T ss_pred             Hh-hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccccHHHHHHHHHHhcCc
Confidence            99 889999999999866554432    2689999999999999999999999999999999998875444432  1456


Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhhcC
Q psy12373        158 EPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSGHH  197 (198)
Q Consensus       158 ~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~~~  197 (198)
                      ..+...|+.-|+-++++|+|.+|    +-.|.+++||.|+-.|+
T Consensus       821 e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~  864 (1636)
T KOG3616|consen  821 EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHG  864 (1636)
T ss_pred             hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhC
Confidence            77778888888999999999999    88899999999988775

>KOG2041|consensus

Probab=99.66  E-value=1.3e-15  Score=134.63  Aligned_cols=135  Identities=19%  Similarity=0.135  Sum_probs=124.3

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      -.+++|+++|.++|+.+.-++|+.++.+|+.+..++..++ +.+++-.+|.+|.+.|.+++|+++|.|.++++.||..|+
T Consensus       810 ~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv  889 (1189)
T KOG2041|consen  810 MEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCV  889 (1189)
T ss_pred             HHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHH
Confidence            3578999999999999999999999999999999999887 889999999999999999999999999999999999999


Q ss_pred             hccCCHHHHHHHHHhcCCHHHHHHHHHH---HHhcCCHHHHHHHHHHcCChHHHHHHHHH
Q psy12373         86 DHLNDIRHAVDIVKAKKCTEGAKRIADY---CNKHGDFGAAIHFLILSKCYQDAFNLSQQ  142 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~---~~~~g~~~~Av~~y~~ag~~~~A~~la~~  142 (198)
                       ++|+|.+|++++..+.-|++...+|++   |...+...+||+.+++||++-+|.+|..+
T Consensus       890 -~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~q  948 (1189)
T KOG2041|consen  890 -ELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQ  948 (1189)
T ss_pred             -HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHH
Confidence             999999999999999888877666654   67788999999999999999999887643

>KOG1538|consensus

Probab=99.59  E-value=7.6e-15  Score=128.96  Aligned_cols=138  Identities=11%  Similarity=0.070  Sum_probs=129.3

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVD   84 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~   84 (198)
                      +..+-|++++..+|+.++||++....|+.+.+.++..+++  +.+.+..+|.++.....+.-|.+.|.+.||..+.|+|.
T Consensus       704 kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~ksiVqlH  783 (1081)
T KOG1538|consen  704 KEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDLKSLVQLH  783 (1081)
T ss_pred             CCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccHHHHhhhe
Confidence            6788999999999999999999999999999999999887  77888999999999999999999999999999999999


Q ss_pred             hhccCCHHHHHHHHHhcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373         85 LDHLNDIRHAVDIVKAKKC--TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK  145 (198)
Q Consensus        85 ~~~~~~~~~a~~l~~~~~~--~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~  145 (198)
                      + ..++|++|++++..||.  +++...+|+|+.+.++|++|-+.|++||+-.||.++.++.-.
T Consensus       784 v-e~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  784 V-ETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             e-ecccchHhHhhhhhCccccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence            9 78999999999999997  456678999999999999999999999999999999987644

>KOG1920|consensus

Probab=99.10  E-value=1.7e-09  Score=100.75  Aligned_cols=147  Identities=14%  Similarity=0.131  Sum_probs=118.8

Q ss_pred             cchHHHHHHHHHHcC--CHHHHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHH
Q psy12373          6 LTLDRGKWTLYESAG--NYEKAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVV   81 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g--~~~~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av   81 (198)
                      ++.|+.|......+|  -++....+-.+-+.|+.+..+...-+  -..++.-+|.++...+.+++|.-+|+++|..++|+
T Consensus       893 L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl  972 (1265)
T KOG1920|consen  893 LKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKAL  972 (1265)
T ss_pred             HHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHH
Confidence            467888888888888  57777877778888888777765433  45677789999999999999999999999999999


Q ss_pred             HHHhhccCCHHHHHHHHHhcCCH-HHHHHHH-----------------HH-HHhcCCHHHHHHHHHHcCChHHHHHHHHH
Q psy12373         82 RVDLDHLNDIRHAVDIVKAKKCT-EGAKRIA-----------------DY-CNKHGDFGAAIHFLILSKCYQDAFNLSQQ  142 (198)
Q Consensus        82 ~l~~~~~~~~~~a~~l~~~~~~~-~~~~~~A-----------------~~-~~~~g~~~~Av~~y~~ag~~~~A~~la~~  142 (198)
                      ..+. ..++|++++.++.+.... +....+|                 +. ++--+++++||.+|++|..|++|+++|..
T Consensus       973 ~a~~-~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen  973 KAYK-ECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred             HHHH-HhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHHHHHHhhHhHHHHHHHHHHh
Confidence            9999 899999999999865432 3222221                 22 23457889999999999999999999999


Q ss_pred             cchhhHHhhhh
Q psy12373        143 HKKLHEFGKFL  153 (198)
Q Consensus       143 ~~~~~~~~~~~  153 (198)
                      ++.-|.+++++
T Consensus      1052 ~~~~d~iee~l 1062 (1265)
T KOG1920|consen 1052 AKRDDIIEEVL 1062 (1265)
T ss_pred             cccchHHHHHH
Confidence            99877777764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.97  E-value=7.4e-09  Score=85.47  Aligned_cols=134  Identities=18%  Similarity=0.215  Sum_probs=77.1

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR   82 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~   82 (198)
                      .+|++|+..|..+|++++|+++|.++....      .+..    ....+...+..+... ++++|+++|.++      ++
T Consensus        36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~------~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A------~~  102 (282)
T PF14938_consen   36 DLYEKAANCFKLAKDWEKAAEAYEKAADCY------EKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKA------IE  102 (282)
T ss_dssp             HHHHHHHHHHHHTT-CHHHHHHHHHHHHHH------HHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHH------HH
T ss_pred             HHHHHHHHHHHHHhccchhHHHHHHHHHHH------HHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHH------HH
Confidence            344444445555555555555555543222      2222    223344445555444 888888888877      88


Q ss_pred             HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCH
Q psy12373         83 VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKH-GDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNP  161 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~-g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~  161 (198)
                      ++. ..|+++.+.++         ...+|+.|++. |++++|+++|.+|-.      +....+..           ....
T Consensus       103 ~y~-~~G~~~~aA~~---------~~~lA~~ye~~~~d~e~Ai~~Y~~A~~------~y~~e~~~-----------~~a~  155 (282)
T PF14938_consen  103 IYR-EAGRFSQAAKC---------LKELAEIYEEQLGDYEKAIEYYQKAAE------LYEQEGSP-----------HSAA  155 (282)
T ss_dssp             HHH-HCT-HHHHHHH---------HHHHHHHHCCTT--HHHHHHHHHHHHH------HHHHTT-H-----------HHHH
T ss_pred             HHH-hcCcHHHHHHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHCCCh-----------hhHH
Confidence            888 77888887655         44688888888 899998888876544      44333322           1123


Q ss_pred             HHHHHHHHHHHhCCChhhH
Q psy12373        162 VELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       162 ~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.+.++|..+...|+|++|
T Consensus       156 ~~~~~~A~l~~~l~~y~~A  174 (282)
T PF14938_consen  156 ECLLKAADLYARLGRYEEA  174 (282)
T ss_dssp             HHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHHHHHHHhCCHHHH
Confidence            4556677777666666666

>KOG1586|consensus

Probab=98.90  E-value=3.8e-09  Score=83.58  Aligned_cols=108  Identities=24%  Similarity=0.251  Sum_probs=71.9

Q ss_pred             cccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-------cC---ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          4 GALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-------IK---SATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         4 ~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-------~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |..++|++|+++|+++++      +|..+++|..|..-..+       .+   +....+.-|--+-+.++..+|+++..+
T Consensus        25 gg~~k~eeAadl~~~Aan------~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~   98 (288)
T KOG1586|consen   25 GGSNKYEEAAELYERAAN------MYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEK   98 (288)
T ss_pred             CCCcchHHHHHHHHHHHH------HHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHH
Confidence            344899999999999998      88888888876533321       11   122222222223333355555555544


Q ss_pred             hcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHcCCh
Q psy12373         74 AEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKH-GDFGAAIHFLILSKCY  133 (198)
Q Consensus        74 a~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~-g~~~~Av~~y~~ag~~  133 (198)
                      +      |+|+. +.|++..|.+.         ...+|.+|++. .|+++||..|..|+.|
T Consensus        99 a------ieIyt-~~Grf~~aAk~---------~~~iaEiyEsdl~d~ekaI~~YE~Aae~  143 (288)
T KOG1586|consen   99 A------IEIYT-DMGRFTMAAKH---------HIEIAEIYESDLQDFEKAIAHYEQAAEY  143 (288)
T ss_pred             H------HHHHH-hhhHHHHHHhh---------hhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence            4      77787 77887766433         44688999876 8899999999999986

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.77  E-value=4.2e-07  Score=75.00  Aligned_cols=139  Identities=19%  Similarity=0.247  Sum_probs=88.3

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH   87 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~   87 (198)
                      .|++|+.+|.++|+      +|...++|++|..         .+...|..+++.|+...|...|+.+      ..++. .
T Consensus        30 ~~e~Aa~~y~~Aa~------~fk~~~~~~~A~~---------ay~kAa~~~~~~~~~~~Aa~~~~~A------a~~~k-~   87 (282)
T PF14938_consen   30 DYEEAADLYEKAAN------CFKLAKDWEKAAE---------AYEKAADCYEKLGDKFEAAKAYEEA------ANCYK-K   87 (282)
T ss_dssp             HHHHHHHHHHHHHH------HHHHTT-CHHHHH---------HHHHHHHHHHHTT-HHHHHHHHHHH------HHHHH-H
T ss_pred             CHHHHHHHHHHHHH------HHHHHhccchhHH---------HHHHHHHHHHHcCCHHHHHHHHHHH------HHHHH-h
Confidence            67788887777776      7777788877763         3445566666677766666666655      66666 3


Q ss_pred             cCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc-CCCCHHHHHH
Q psy12373         88 LNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKR  166 (198)
Q Consensus        88 ~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~-~~~~~~~~~~  166 (198)
                      . ++++|+++                      +++|+++|...|++..|.++...-+..  +.+.  ++ .+..-+.|.+
T Consensus        88 ~-~~~~Ai~~----------------------~~~A~~~y~~~G~~~~aA~~~~~lA~~--ye~~--~~d~e~Ai~~Y~~  140 (282)
T PF14938_consen   88 G-DPDEAIEC----------------------YEKAIEIYREAGRFSQAAKCLKELAEI--YEEQ--LGDYEKAIEYYQK  140 (282)
T ss_dssp             T-THHHHHHH----------------------HHHHHHHHHHCT-HHHHHHHHHHHHHH--HCCT--T--HHHHHHHHHH
T ss_pred             h-CHHHHHHH----------------------HHHHHHHHHhcCcHHHHHHHHHHHHHH--HHHH--cCCHHHHHHHHHH
Confidence            2 66655544                      346888888888888887776544321  0000  01 1122456777


Q ss_pred             HHHHHHhCCChhhH-----------HhcCChhhHHhhhhh
Q psy12373        167 LAIHFEEDKGVLTS-----------FRVSQQSRAMPCSSG  195 (198)
Q Consensus       167 ~A~~~e~~g~~~~A-----------~~ag~~~~Al~l~~~  195 (198)
                      .+..|+..|....+           .+.|+|.+|++++.+
T Consensus       141 A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~  180 (282)
T PF14938_consen  141 AAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEE  180 (282)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            88899999977666           889999999999864

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.75  E-value=1.1e-06  Score=81.13  Aligned_cols=104  Identities=12%  Similarity=0.121  Sum_probs=62.8

Q ss_pred             HHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhc---------CHHHHHHHHhhccCCHH
Q psy12373         24 KAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAE---------DYDNVVRVDLDHLNDIR   92 (198)
Q Consensus        24 ~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~---------~~~~av~l~~~~~~~~~   92 (198)
                      ..|.+|.+.|+++.|.++.+...  +...+..+...+...|++++|.++|.+..         .+...++.|. ..|+++
T Consensus       264 ~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~-~~g~~~  342 (697)
T PLN03081        264 ALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS-RLALLE  342 (697)
T ss_pred             HHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hccchH
Confidence            45667777777777777776654  33444556677777788888887776552         2456677777 677777


Q ss_pred             HHHHHHHh---c---CCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373         93 HAVDIVKA---K---KCTEGAKRIADYCNKHGDFGAAIHFLI  128 (198)
Q Consensus        93 ~a~~l~~~---~---~~~~~~~~~A~~~~~~g~~~~Av~~y~  128 (198)
                      +|.++-..   .   ++......+...|.+.|++++|.++|.
T Consensus       343 ~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~  384 (697)
T PLN03081        343 HAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD  384 (697)
T ss_pred             HHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence            76655432   1   111222234555666666666655543

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.70  E-value=2.8e-06  Score=78.31  Aligned_cols=103  Identities=15%  Similarity=0.183  Sum_probs=69.6

Q ss_pred             HHHHHccCHHHHHhhhhcc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHH
Q psy12373         27 TCYIQLKNWTKIGQLLPHI-----KSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRH   93 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~~-----~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~   93 (198)
                      ..|.+.++++++..++...     +++..+..+|..+...|++++|+++|.++-.        +....+++. ..|++++
T Consensus       439 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~  517 (899)
T TIGR02917       439 LSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDI-QEGNPDD  517 (899)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHH-HCCCHHH
Confidence            3455566777766665432     3667788889999999999999999988632        234456666 6788888


Q ss_pred             HHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         94 AVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        94 a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      |..+.++    .| +......++..+...|++++|+.+|.++
T Consensus       518 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  559 (899)
T TIGR02917       518 AIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKA  559 (899)
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            8776543    22 2344456777777778877777665543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.67  E-value=5e-06  Score=79.73  Aligned_cols=21  Identities=10%  Similarity=0.091  Sum_probs=9.6

Q ss_pred             CHHHHHHHHHHHHhCCChhhH
Q psy12373        160 NPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       160 ~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +...+..+...|.+.|++++|
T Consensus       718 dvvtyN~LI~gy~k~G~~eeA  738 (1060)
T PLN03218        718 TVSTMNALITALCEGNQLPKA  738 (1060)
T ss_pred             CHHHHHHHHHHHHHCCCHHHH
Confidence            334444444444444444444

>PLN03218 maturation of RBCL 1; Provisional

Probab=98.66  E-value=5.8e-06  Score=79.32  Aligned_cols=38  Identities=16%  Similarity=0.032  Sum_probs=27.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCChhhH--------------------------HhcCChhhHHhhhh
Q psy12373        157 DEPNPVELKRLAIHFEEDKGVLTS--------------------------FRVSQQSRAMPCSS  194 (198)
Q Consensus       157 ~~~~~~~~~~~A~~~e~~g~~~~A--------------------------~~ag~~~~Al~l~~  194 (198)
                      ...+...+..+...|.+.|++++|                          .+.|++++|++++.
T Consensus       680 ~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~  743 (1060)
T PLN03218        680 IKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLS  743 (1060)
T ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            345667777777777778877777                          36777777777654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.66  E-value=2.7e-06  Score=74.41  Aligned_cols=160  Identities=16%  Similarity=0.150  Sum_probs=117.5

Q ss_pred             HccCHHHH------HhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCH
Q psy12373         31 QLKNWTKI------GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCT  104 (198)
Q Consensus        31 ~~~~~~~a------~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~  104 (198)
                      -.++++.+      .+++..++ ++....+++++++.|-.+.|.++   +.|++.=.++++ .+|+++.|.+++++.+++
T Consensus       273 ~~~d~~~v~~~i~~~~ll~~i~-~~~~~~i~~fL~~~G~~e~AL~~---~~D~~~rFeLAl-~lg~L~~A~~~a~~~~~~  347 (443)
T PF04053_consen  273 LRGDFEEVLRMIAASNLLPNIP-KDQGQSIARFLEKKGYPELALQF---VTDPDHRFELAL-QLGNLDIALEIAKELDDP  347 (443)
T ss_dssp             HTT-HHH-----HHHHTGGG---HHHHHHHHHHHHHTT-HHHHHHH---SS-HHHHHHHHH-HCT-HHHHHHHCCCCSTH
T ss_pred             HcCChhhhhhhhhhhhhcccCC-hhHHHHHHHHHHHCCCHHHHHhh---cCChHHHhHHHH-hcCCHHHHHHHHHhcCcH
Confidence            34556663      45555555 67788999999999999999765   788888899999 999999999999999989


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcC-CCCHHHHHHHHHHHHhCCChhhH---
Q psy12373        105 EGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED-EPNPVELKRLAIHFEEDKGVLTS---  180 (198)
Q Consensus       105 ~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~e~~g~~~~A---  180 (198)
                      ..-.++|......|+++-|.+.|.++++++.-.=|+.-.|..+-+.++..+.. ...-...+.++-+.   |++++-   
T Consensus       348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~l---gd~~~cv~l  424 (443)
T PF04053_consen  348 EKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLL---GDVEECVDL  424 (443)
T ss_dssp             HHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHH---T-HHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHc---CCHHHHHHH
Confidence            88889999999999999999999999999999989888887766666644332 33334434333333   666666   


Q ss_pred             -HhcCChhhHHhhhhhcCC
Q psy12373        181 -FRVSQQSRAMPCSSGHHP  198 (198)
Q Consensus       181 -~~ag~~~~Al~l~~~~~~  198 (198)
                       +++|++.+|.=++..|.|
T Consensus       425 L~~~~~~~~A~~~A~ty~~  443 (443)
T PF04053_consen  425 LIETGRLPEAALFARTYGP  443 (443)
T ss_dssp             HHHTT-HHHHHHHHHHTT-
T ss_pred             HHHcCCchHHHHHHHhcCC
Confidence             888888888888888877

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.65  E-value=4.5e-06  Score=75.90  Aligned_cols=173  Identities=12%  Similarity=0.075  Sum_probs=112.3

Q ss_pred             chHHHHHHHHHHcC--C------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAG--N------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g--~------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |++++|...|.++=  +      +-....++...|+++.+...+..     ..++.++..+|..+...|++++|+.+|.+
T Consensus       345 g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~k  424 (615)
T TIGR00990       345 GKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQK  424 (615)
T ss_pred             CCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45555555555441  1      12223445566677776665542     23678999999999999999999999999


Q ss_pred             hcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH------
Q psy12373         74 AEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ------  134 (198)
Q Consensus        74 a~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~------  134 (198)
                      +-+.        .....++. .+|++++|+...++    .| ++.....++..+...|++++|++.|.++-...      
T Consensus       425 al~l~P~~~~~~~~la~~~~-~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~  503 (615)
T TIGR00990       425 SIDLDPDFIFSHIQLGVTQY-KEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPM  503 (615)
T ss_pred             HHHcCccCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccc
Confidence            8432        22334455 67999999887654    23 35556678999999999999999998865431      


Q ss_pred             ---------HHHHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        135 ---------DAFNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       135 ---------~A~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                               .+..+....+.++....++.  +. .+.++..+..+|+.+...|++++|
T Consensus       504 ~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eA  561 (615)
T TIGR00990       504 YMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEA  561 (615)
T ss_pred             cccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHH
Confidence                     11112222344433222221  22 234566788999999999999999

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.64  E-value=1.4e-06  Score=76.26  Aligned_cols=132  Identities=16%  Similarity=0.158  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHcCCHHHHH----------HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH
Q psy12373          9 DRGKWTLYESAGNYEKAA----------TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD   78 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai----------~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~   78 (198)
                      ....+.++++.|-++.|+          ++-+++|+.+.|.+++..++++....++|...-..|+++-|.++|.+++|+.
T Consensus       298 ~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~  377 (443)
T PF04053_consen  298 GQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS  377 (443)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH
T ss_pred             HHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc
Confidence            456778888888888887          4677889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcc
Q psy12373         79 NVVRVDLDHLNDIRHAVDIVKA---KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHK  144 (198)
Q Consensus        79 ~av~l~~~~~~~~~~a~~l~~~---~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~  144 (198)
                      +..=++. -.|+-++..+++..   .++...... +-+  -.||+++.+++++++|++.+|.=.|..++
T Consensus       378 ~L~lLy~-~~g~~~~L~kl~~~a~~~~~~n~af~-~~~--~lgd~~~cv~lL~~~~~~~~A~~~A~ty~  442 (443)
T PF04053_consen  378 GLLLLYS-STGDREKLSKLAKIAEERGDINIAFQ-AAL--LLGDVEECVDLLIETGRLPEAALFARTYG  442 (443)
T ss_dssp             HHHHHHH-HCT-HHHHHHHHHHHHHTT-HHHHHH-HHH--HHT-HHHHHHHHHHTT-HHHHHHHHHHTT
T ss_pred             ccHHHHH-HhCCHHHHHHHHHHHHHccCHHHHHH-HHH--HcCCHHHHHHHHHHcCCchHHHHHHHhcC
Confidence            9999999 78888887766543   333333322 222  23899999999999999999988877664

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.62  E-value=8.1e-06  Score=75.26  Aligned_cols=23  Identities=17%  Similarity=0.052  Sum_probs=15.3

Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        158 EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       158 ~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.++..+..+|..|...|++.+|
T Consensus       767 ~~~~~~~~~la~~~~~~g~~~~A  789 (899)
T TIGR02917       767 PNDAVLRTALAELYLAQKDYDKA  789 (899)
T ss_pred             CCCHHHHHHHHHHHHHCcCHHHH
Confidence            34566666777777777777666

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>KOG2247|consensus

Probab=98.61  E-value=3.7e-10  Score=97.07  Aligned_cols=178  Identities=19%  Similarity=0.180  Sum_probs=150.8

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD   86 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~   86 (198)
                      +++-+++.+|+..|.|+.+--.|.+.+.|.++..++.++-.+..+..+|++.|..+  ..|+ .|...++...-+|.+.+
T Consensus       186 ~qegeta~ltevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~--pval-~fq~~~gni~cyrwylD  262 (615)
T KOG2247|consen  186 TQEGETASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDE--PVAL-QFQEKYGNIHCYRWYLD  262 (615)
T ss_pred             hhccceeeeeeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCC--ccce-EeeecCCceeEEEEecc
Confidence            67789999999999999999999999999999999999888999999999999988  7788 99999999999999997


Q ss_pred             -ccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHH
Q psy12373         87 -HLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELK  165 (198)
Q Consensus        87 -~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~  165 (198)
                       ++....++..+++.+  .......|++|.+. |+..|+++...+++..+|+.++..+++...+.++.++     -...+
T Consensus       263 g~i~igf~ag~iV~iS--~h~aeLgaeffqkl-dy~~aLqsiavsqcvnkaftlgdn~nkvRdl~el~e~-----y~n~L  334 (615)
T KOG2247|consen  263 GYILIGFDAGYIVSIS--AHNAELGAEFFQKL-DYRGALQSIAVSQCVNKAFTLGDNMNKVRDLDELTEV-----YMNTL  334 (615)
T ss_pred             ccccccccceeEEEEe--ccchHHHHHHHHHh-hHHhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH-----HHHHH
Confidence             788888898888775  45566789999999 9999999999999999999999999888766766321     11115


Q ss_pred             HHHHHHHhCCChhhH----HhcCChhhHHhhhhh
Q psy12373        166 RLAIHFEEDKGVLTS----FRVSQQSRAMPCSSG  195 (198)
Q Consensus       166 ~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~  195 (198)
                      ..|.+++....+-.+    ..++++..++..++.
T Consensus       335 ~eaek~lge~~~t~dgqlyals~Q~g~l~~fLtK  368 (615)
T KOG2247|consen  335 IEAEKNLGEIEVTEDGQLYALSSQSGVLSIFLTK  368 (615)
T ss_pred             HHHHhccCceeeeeccceeeehhccchHHHHHHh
Confidence            677777777777666    778888888776653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.61  E-value=2.9e-07  Score=75.49  Aligned_cols=151  Identities=17%  Similarity=0.176  Sum_probs=79.4

Q ss_pred             cchHHHHHHHHHHc-------CCHHHHHHHHHHccCHHHHHhhhhc-------cCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESA-------GNYEKAATCYIQLKNWTKIGQLLPH-------IKSATTFIQYAKAKEAMGSYRESVGAY   71 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~-------g~~~~Ai~~y~~~~~~~~a~~l~~~-------~~~~~l~~~~A~~~e~~g~~~~A~~~Y   71 (198)
                      .+.+++|.++++++       .-+..++.+|...++|+++.+++..       .+++.++...|..+...|++++|+++|
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~  169 (280)
T PF13429_consen   90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY  169 (280)
T ss_dssp             ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            35677777666543       3445677888888999888777754       126678888899999999999999999


Q ss_pred             HHhcCH--------HHHHHHHhhccCCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHH
Q psy12373         72 ERAEDY--------DNVVRVDLDHLNDIRHAVDIVKAK-----KCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFN  138 (198)
Q Consensus        72 ~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~-----~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~  138 (198)
                      .++=..        ...+.+++ ..|+.+++..+++..     +++.....+|..+...|++++|+..|.++-.      
T Consensus       170 ~~al~~~P~~~~~~~~l~~~li-~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~------  242 (280)
T PF13429_consen  170 RKALELDPDDPDARNALAWLLI-DMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK------  242 (280)
T ss_dssp             HHHHHH-TT-HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH------
T ss_pred             HHHHHcCCCCHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc------
Confidence            887531        33455666 667777755554321     2233334456666666666666665554221      


Q ss_pred             HHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        139 LSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       139 la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                                       ..+.+|..+..+|..+...|++++|
T Consensus       243 -----------------~~p~d~~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  243 -----------------LNPDDPLWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             -----------------HSTT-HHHHHHHHHHHT--------
T ss_pred             -----------------ccccccccccccccccccccccccc
Confidence                             2456899999999999999988888

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.60  E-value=9e-06  Score=69.20  Aligned_cols=154  Identities=19%  Similarity=0.184  Sum_probs=69.2

Q ss_pred             HHHHHHccCHHHHHhhhhcc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------------HHHHHHHhhc
Q psy12373         26 ATCYIQLKNWTKIGQLLPHI-----KSATTFIQYAKAKEAMGSYRESVGAYERAEDY-------------DNVVRVDLDH   87 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~~-----~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------------~~av~l~~~~   87 (198)
                      ..+|...|+++.|..+..+.     .+...+..++..+...|++++|++.|.+.-..             .....++. .
T Consensus       114 a~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~-~  192 (389)
T PRK11788        114 GQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQAL-A  192 (389)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHH-h
Confidence            33444445555554444321     13334445555555556666665555544211             01122233 3


Q ss_pred             cCCHHHHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCC--hHH---H----HHHHHHcchhhHHhhhh
Q psy12373         88 LNDIRHAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILSKC--YQD---A----FNLSQQHKKLHEFGKFL  153 (198)
Q Consensus        88 ~~~~~~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~--~~~---A----~~la~~~~~~~~~~~~~  153 (198)
                      .|++++|..+.++    .++ ......+|..+...|++++|+++|.++..  +..   +    ..+....+.++.....+
T Consensus       193 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l  272 (389)
T PRK11788        193 RGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFL  272 (389)
T ss_pred             CCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4566665555443    111 22233455666666666666666666542  111   1    12223334333222222


Q ss_pred             h--hcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        154 L--EEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       154 ~--l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .  +....++..+..++..+...|++++|
T Consensus       273 ~~~~~~~p~~~~~~~la~~~~~~g~~~~A  301 (389)
T PRK11788        273 RRALEEYPGADLLLALAQLLEEQEGPEAA  301 (389)
T ss_pred             HHHHHhCCCchHHHHHHHHHHHhCCHHHH
Confidence            1  11112223446666666666666666

>PLN03077 Protein ECB2; Provisional

Probab=98.55  E-value=5e-06  Score=78.36  Aligned_cols=52  Identities=8%  Similarity=0.087  Sum_probs=34.0

Q ss_pred             HHHHHHHHHccCHHHHHhhhhccCC--hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         23 EKAATCYIQLKNWTKIGQLLPHIKS--ATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        23 ~~Ai~~y~~~~~~~~a~~l~~~~~~--~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ...|.+|.+.|+++.|.++.+....  .-.+..+-..+-..|++++|.++|.+.
T Consensus       226 n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M  279 (857)
T PLN03077        226 NALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTM  279 (857)
T ss_pred             hHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHH
Confidence            4566777777777777777766553  333444455666777777777777665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=98.54  E-value=5.7e-06  Score=76.31  Aligned_cols=157  Identities=8%  Similarity=0.021  Sum_probs=89.0

Q ss_pred             HHHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---------HHHHHHHHhhccCCH
Q psy12373         23 EKAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAED---------YDNVVRVDLDHLNDI   91 (198)
Q Consensus        23 ~~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---------~~~av~l~~~~~~~~   91 (198)
                      ...|.+|++.|+++.|.++.+...  +...+..+...+-..|+.++|+++|.+...         +...+..|. +.|..
T Consensus       364 ~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~-~~g~~  442 (697)
T PLN03081        364 TALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACR-YSGLS  442 (697)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHh-cCCcH
Confidence            345566666666666666665543  333344455666666777777776666432         455566666 66677


Q ss_pred             HHHHHHHHhc-------CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC------hHHHHHHHHHcchhhHHhhhhh--hc
Q psy12373         92 RHAVDIVKAK-------KCTEGAKRIADYCNKHGDFGAAIHFLILSKC------YQDAFNLSQQHKKLHEFGKFLL--EE  156 (198)
Q Consensus        92 ~~a~~l~~~~-------~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~------~~~A~~la~~~~~~~~~~~~~~--l~  156 (198)
                      +++.++-..-       |+.....-+...|.+.|++++|.+++.+.+.      |..-+..+..+++++....+..  +.
T Consensus       443 ~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~  522 (697)
T PLN03081        443 EQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG  522 (697)
T ss_pred             HHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC
Confidence            7666554321       1111222345556666777777777666554      3333455556666554333321  12


Q ss_pred             -CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        157 -DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       157 -~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                       .+.++..|..+...|...|++++|
T Consensus       523 ~~p~~~~~y~~L~~~y~~~G~~~~A  547 (697)
T PLN03081        523 MGPEKLNNYVVLLNLYNSSGRQAEA  547 (697)
T ss_pred             CCCCCCcchHHHHHHHHhCCCHHHH
Confidence             122355777888888888888777

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.54  E-value=2.7e-05  Score=71.54  Aligned_cols=123  Identities=12%  Similarity=0.065  Sum_probs=60.8

Q ss_pred             chHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |++++|...|.+.=     +   +.....++...|+++.|...+.+     .+++..+..+++.+...|++++|+..|.+
T Consensus        90 g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~  169 (656)
T PRK15174         90 SQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLART  169 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            55555555555431     1   12223445555666665444432     22455666667777777777777776654


Q ss_pred             hc-----CHH--HHHHHHhhccCCHHHHHHHHHhc----C--CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         74 AE-----DYD--NVVRVDLDHLNDIRHAVDIVKAK----K--CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        74 a~-----~~~--~av~l~~~~~~~~~~a~~l~~~~----~--~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .-     +..  ..+..+. ..|++++|..+.+..    +  ........+..+...|++++|+..|.++
T Consensus       170 ~~~~~P~~~~a~~~~~~l~-~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~a  238 (656)
T PRK15174        170 QAQEVPPRGDMIATCLSFL-NKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESA  238 (656)
T ss_pred             HHHhCCCCHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            41     110  0111233 456666666655431    1  1111123345555666666666555443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.51  E-value=2.3e-05  Score=66.70  Aligned_cols=173  Identities=10%  Similarity=0.024  Sum_probs=104.2

Q ss_pred             chHHHHHHHHHHc--------CCHHHHHHHHHHccCHHHHHhhhhcc---C------ChHHHHHHHHHHHHcCCHHHHHH
Q psy12373          7 TLDRGKWTLYESA--------GNYEKAATCYIQLKNWTKIGQLLPHI---K------SATTFIQYAKAKEAMGSYRESVG   69 (198)
Q Consensus         7 ~~~~~Aa~~y~~~--------g~~~~Ai~~y~~~~~~~~a~~l~~~~---~------~~~l~~~~A~~~e~~g~~~~A~~   69 (198)
                      |.+++|..+|.++        .-+.....+|...|+++.+..+...+   +      ....+..+|..+...|+++.|.+
T Consensus        49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  128 (389)
T PRK11788         49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE  128 (389)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            5556666666554        12444555666666666665554321   1      12456677889999999999999


Q ss_pred             HHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc----CCHH------HHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         70 AYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK----KCTE------GAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        70 ~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~----~~~~------~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                      +|.++-.        +...+.++. ..|+|++|..+.+..    +.+.      ....+|..+...|++++|+.+|.++-
T Consensus       129 ~~~~~l~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  207 (389)
T PRK11788        129 LFLQLVDEGDFAEGALQQLLEIYQ-QEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL  207 (389)
T ss_pred             HHHHHHcCCcchHHHHHHHHHHHH-HhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9988853        233456677 778999988776532    2111      11246677778888888888887754


Q ss_pred             Ch----HHH----HHHHHHcchhhHHhhhh----hhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        132 CY----QDA----FNLSQQHKKLHEFGKFL----LEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       132 ~~----~~A----~~la~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..    ..+    ..++...|.++...+++    .+.++..+..+..++..|...|++++|
T Consensus       208 ~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A  268 (389)
T PRK11788        208 AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEG  268 (389)
T ss_pred             hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHH
Confidence            31    112    23344555544333322    122333345667788888888888877

>KOG0985|consensus

Probab=98.49  E-value=1.5e-05  Score=74.29  Aligned_cols=91  Identities=15%  Similarity=0.219  Sum_probs=84.4

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHH-HccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---HHHHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYI-QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY---DNVVR   82 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~-~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---~~av~   82 (198)
                      .+|+||-..|.+-....+|+...+ ..++.++|.+.+.+...+.+..++|+.--..|...+||+-|+|+.|+   ...|+
T Consensus      1062 ~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~ 1141 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVID 1141 (1666)
T ss_pred             hHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHH
Confidence            689999999999999999999998 67999999999999999999999999999999999999999999985   67899


Q ss_pred             HHhhccCCHHHHHHHH
Q psy12373         83 VDLDHLNDIRHAVDIV   98 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~   98 (198)
                      ++- +.|.|++.++..
T Consensus      1142 ~a~-~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1142 VAS-RTGKYEDLVKYL 1156 (1666)
T ss_pred             HHH-hcCcHHHHHHHH
Confidence            998 889999998754

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.48  E-value=1.4e-05  Score=77.68  Aligned_cols=154  Identities=12%  Similarity=0.073  Sum_probs=99.5

Q ss_pred             HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC------------------HHHHHH
Q psy12373         26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAED------------------YDNVVR   82 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~------------------~~~av~   82 (198)
                      ..+|...|+++.|...+++     ..++..+...|.++...|++++|+..+.+.-.                  .....+
T Consensus       502 A~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~  581 (1157)
T PRK11447        502 AQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN  581 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence            3345566677776655542     22666677777778888888888888776421                  112244


Q ss_pred             HHhhccCCHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCCh----HHH----HHHHHHcchhhHHhhhh
Q psy12373         83 VDLDHLNDIRHAVDIVKAKKC-TEGAKRIADYCNKHGDFGAAIHFLILSKCY----QDA----FNLSQQHKKLHEFGKFL  153 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~----~~A----~~la~~~~~~~~~~~~~  153 (198)
                      .+. ..|+.++|..+.+..|. +.....+|.++.+.|++++|+..|.++=..    .+|    .++....++++...+.+
T Consensus       582 ~l~-~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l  660 (1157)
T PRK11447        582 RLR-DSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL  660 (1157)
T ss_pred             HHH-HCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            555 67888888888887654 344557899999999999999888765431    112    23334445544333332


Q ss_pred             h--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        154 L--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       154 ~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .  +. .+.++..+..+|..+...|++++|
T Consensus       661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA  690 (1157)
T PRK11447        661 AKLPATANDSLNTQRRVALAWAALGDTAAA  690 (1157)
T ss_pred             HHHhccCCCChHHHHHHHHHHHhCCCHHHH
Confidence            1  12 235677888889988899999888

>PLN03077 Protein ECB2; Provisional

Probab=98.44  E-value=3.4e-05  Score=72.78  Aligned_cols=51  Identities=4%  Similarity=0.002  Sum_probs=33.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcC-----HHHHHHHHhhccCCHHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAED-----YDNVVRVDLDHLNDIRHAVDIVK   99 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-----~~~av~l~~~~~~~~~~a~~l~~   99 (198)
                      ..+...+-..+.+.|++++|.+.|.+..+     |...|..++ ..|++++|..+-+
T Consensus       424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~-~~g~~~eA~~lf~  479 (857)
T PLN03077        424 VVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLR-LNNRCFEALIFFR  479 (857)
T ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHH-HCCCHHHHHHHHH
Confidence            33444555667777777777777776654     566677777 6677777776654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.40  E-value=1.8e-05  Score=65.74  Aligned_cols=130  Identities=12%  Similarity=0.066  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc---CCHHHHHHHHHH-----
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK---KCTEGAKRIADY-----  113 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~---~~~~~~~~~A~~-----  113 (198)
                      .+.++|+-|...|.++-|.+.|...-|        ....+.||- .-.+|++|+.++++.   ....--..+|++     
T Consensus       109 Al~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ-~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELA  187 (389)
T COG2956         109 ALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQ-ATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELA  187 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHH
Confidence            455889999999999999999998876        245566776 678999999999843   222222344444     


Q ss_pred             --HHhcCCHHHHHHHHHHcCChHH----H----HHHHHHcchhhHHhhhh----hhcCCCCHHHHHHHHHHHHhCCChhh
Q psy12373        114 --CNKHGDFGAAIHFLILSKCYQD----A----FNLSQQHKKLHEFGKFL----LEEDEPNPVELKRLAIHFEEDKGVLT  179 (198)
Q Consensus       114 --~~~~g~~~~Av~~y~~ag~~~~----A----~~la~~~~~~~~~~~~~----~l~~~~~~~~~~~~A~~~e~~g~~~~  179 (198)
                        ..-..++++|+.++.||=.-+.    |    =++.-..|.+....+.+    .-.++-.|++...+...|...|++.+
T Consensus       188 q~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~  267 (389)
T COG2956         188 QQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAE  267 (389)
T ss_pred             HHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHH
Confidence              4557788888888877643211    0    12223333333222222    12345557778888888888888776


Q ss_pred             H
Q psy12373        180 S  180 (198)
Q Consensus       180 A  180 (198)
                      .
T Consensus       268 ~  268 (389)
T COG2956         268 G  268 (389)
T ss_pred             H
Confidence            6

>KOG0276|consensus

Probab=98.35  E-value=7.5e-06  Score=72.64  Aligned_cols=147  Identities=14%  Similarity=0.126  Sum_probs=119.8

Q ss_pred             HccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHH
Q psy12373         31 QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRI  110 (198)
Q Consensus        31 ~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~  110 (198)
                      .-++++.+..++..++ ++.....+..+|+.|..++|.+.   +.|...=.++.+ ++|+.+.|..|+.+..+..--.++
T Consensus       598 mrrd~~~a~~vLp~I~-k~~rt~va~Fle~~g~~e~AL~~---s~D~d~rFelal-~lgrl~iA~~la~e~~s~~Kw~~L  672 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIP-KEIRTKVAHFLESQGMKEQALEL---STDPDQRFELAL-KLGRLDIAFDLAVEANSEVKWRQL  672 (794)
T ss_pred             hhccccccccccccCc-hhhhhhHHhHhhhccchHhhhhc---CCChhhhhhhhh-hcCcHHHHHHHHHhhcchHHHHHH
Confidence            3467777777777777 77888999999999999999764   788888899999 999999999999998888888899


Q ss_pred             HHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCCh
Q psy12373        111 ADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQ  186 (198)
Q Consensus       111 A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~  186 (198)
                      +++..+.|++..|.+.+.+|.+|..-+-++-..               .+.+.+..+|.-.+++|..--|    ...|++
T Consensus       673 g~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~---------------g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~  737 (794)
T KOG0276|consen  673 GDAALSAGELPLASECFLRARDLGSLLLLYTSS---------------GNAEGLAVLASLAKKQGKNNLAFLAYFLSGDY  737 (794)
T ss_pred             HHHHhhcccchhHHHHHHhhcchhhhhhhhhhc---------------CChhHHHHHHHHHHhhcccchHHHHHHHcCCH
Confidence            999999999999999999999986655444333               3455566677777777777777    778888


Q ss_pred             hhHHhhhhhcC
Q psy12373        187 SRAMPCSSGHH  197 (198)
Q Consensus       187 ~~Al~l~~~~~  197 (198)
                      +++++++.+.+
T Consensus       738 ~~C~~lLi~t~  748 (794)
T KOG0276|consen  738 EECLELLISTQ  748 (794)
T ss_pred             HHHHHHHHhcC
Confidence            88888877653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.34  E-value=0.00013  Score=67.10  Aligned_cols=152  Identities=6%  Similarity=-0.082  Sum_probs=86.4

Q ss_pred             HHHHHHccCHHHHHhhhhcc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------HHHHHHHhhccCCH
Q psy12373         26 ATCYIQLKNWTKIGQLLPHI-----KSATTFIQYAKAKEAMGSYRESVGAYERAEDY---------DNVVRVDLDHLNDI   91 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~~-----~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---------~~av~l~~~~~~~~   91 (198)
                      ..++...|+++.|...+..+     +++..+..++ .+...|++++|+..|.++-..         ....+++. ..|++
T Consensus       151 a~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~-~~g~~  228 (656)
T PRK15174        151 LRTLVLMDKELQAISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLC-AVGKY  228 (656)
T ss_pred             HHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHH-HCCCH
Confidence            44555666677665544321     2444444443 467889999999988874221         12245566 67888


Q ss_pred             HHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHH----HHHHHHHcCCh----HHH----HHHHHHcchhhHH----h
Q psy12373         92 RHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGA----AIHFLILSKCY----QDA----FNLSQQHKKLHEF----G  150 (198)
Q Consensus        92 ~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~----Av~~y~~ag~~----~~A----~~la~~~~~~~~~----~  150 (198)
                      ++|....++    .| ++.....+|..+...|++++    |+..|.++-..    ..+    ..++...|.++..    .
T Consensus       229 ~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~  308 (656)
T PRK15174        229 QEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQ  308 (656)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            888776653    22 34455567888888888875    66666655321    011    1112222333222    2


Q ss_pred             hhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        151 KFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       151 ~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++.+ .+.++.....++..+...|++++|
T Consensus       309 ~al~l-~P~~~~a~~~La~~l~~~G~~~eA  337 (656)
T PRK15174        309 QSLAT-HPDLPYVRAMYARALRQVGQYTAA  337 (656)
T ss_pred             HHHHh-CCCCHHHHHHHHHHHHHCCCHHHH
Confidence            22112 234567777777777777777776

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.31  E-value=9.6e-07  Score=72.43  Aligned_cols=132  Identities=14%  Similarity=0.059  Sum_probs=63.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHh----c---CHHHHHHHHhhccCCHHHHHHHHHh---c----CCHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERA----E---DYDNVVRVDLDHLNDIRHAVDIVKA---K----KCTEGAKRIAD  112 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka----~---~~~~av~l~~~~~~~~~~a~~l~~~---~----~~~~~~~~~A~  112 (198)
                      ++..+..++.. ...+++++|+++++++    +   -+..++.++. ..++|+++..+..+   .    +++.....+|.
T Consensus        77 ~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~  154 (280)
T PF13429_consen   77 NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYY-RLGDYDEAEELLEKLEELPAAPDSARFWLALAE  154 (280)
T ss_dssp             ------------------------------------------H-HH-HTT-HHHHHHHHHHHHH-T---T-HHHHHHHHH
T ss_pred             ccccccccccc-cccccccccccccccccccccccchhhHHHHHHH-HHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHH
Confidence            34455566666 6888899998776654    2   2456778887 88999998887654   1    23444557899


Q ss_pred             HHHhcCCHHHHHHHHHHcCCh----HHH----HHHHHHcchhhHHhhhhh-h--cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        113 YCNKHGDFGAAIHFLILSKCY----QDA----FNLSQQHKKLHEFGKFLL-E--EDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       113 ~~~~~g~~~~Av~~y~~ag~~----~~A----~~la~~~~~~~~~~~~~~-l--~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ++.+.|++++|+..|.++=..    .++    +-+..+.|..+.+.+++. +  ..+.+|.+...+|..+...|++++|
T Consensus       155 ~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  155 IYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccc
Confidence            999999999999999877441    112    223344555554444431 1  1245677888889999999999888

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.30  E-value=0.00012  Score=71.24  Aligned_cols=77  Identities=16%  Similarity=0.053  Sum_probs=48.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcC
Q psy12373         52 IQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHG  118 (198)
Q Consensus        52 ~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g  118 (198)
                      ...|..+...|++++|+++|.++-.        +....+++. ..|++++|..+.++    .| ++......+.++...|
T Consensus       465 ~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~-~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~  543 (1157)
T PRK11447        465 AQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLR-QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSD  543 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCC
Confidence            3456667778888888888887742        123455566 67888888766553    23 3444445666677777


Q ss_pred             CHHHHHHHHHH
Q psy12373        119 DFGAAIHFLIL  129 (198)
Q Consensus       119 ~~~~Av~~y~~  129 (198)
                      ++++|+..+.+
T Consensus       544 ~~~~Al~~l~~  554 (1157)
T PRK11447        544 RDRAALAHLNT  554 (1157)
T ss_pred             CHHHHHHHHHh
Confidence            77777665544

>KOG2003|consensus

Probab=98.27  E-value=4.9e-05  Score=65.87  Aligned_cols=130  Identities=15%  Similarity=0.189  Sum_probs=81.0

Q ss_pred             cCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCC
Q psy12373         19 AGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLND   90 (198)
Q Consensus        19 ~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~   90 (198)
                      .|+.+.|++||.++.-+-        ..+.+++.++|..+|...+..+||++|.++...        .+.-++|- +-|+
T Consensus       537 ~~~ldeald~f~klh~il--------~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd-qegd  607 (840)
T KOG2003|consen  537 LGNLDEALDCFLKLHAIL--------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD-QEGD  607 (840)
T ss_pred             hcCHHHHHHHHHHHHHHH--------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh-cccc
Confidence            355555555555443221        135678888888889888888999988888742        34455565 5566


Q ss_pred             HHHHHHHHHhc----CC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHH
Q psy12373         91 IRHAVDIVKAK----KC-TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELK  165 (198)
Q Consensus        91 ~~~a~~l~~~~----~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~  165 (198)
                      -..|++.--.+    |+ .+...++|.||....-+++||++|.+|.-                       -.+....-.+
T Consensus       608 ksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal-----------------------iqp~~~kwql  664 (840)
T KOG2003|consen  608 KSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-----------------------IQPNQSKWQL  664 (840)
T ss_pred             hhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-----------------------cCccHHHHHH
Confidence            66666653221    22 34455677777776667777777665532                       1223345667


Q ss_pred             HHHHHHHhCCChhhH
Q psy12373        166 RLAIHFEEDKGVLTS  180 (198)
Q Consensus       166 ~~A~~~e~~g~~~~A  180 (198)
                      ++|..|-..|+|.+|
T Consensus       665 miasc~rrsgnyqka  679 (840)
T KOG2003|consen  665 MIASCFRRSGNYQKA  679 (840)
T ss_pred             HHHHHHHhcccHHHH
Confidence            788888666666555

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=98.23  E-value=0.00017  Score=65.74  Aligned_cols=156  Identities=13%  Similarity=0.041  Sum_probs=86.2

Q ss_pred             cCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCC
Q psy12373         19 AGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLND   90 (198)
Q Consensus        19 ~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~   90 (198)
                      .++++.|+++|.++-....     ........+..+|..+...|++++|+..|.++-.        +.....++. .+|+
T Consensus       307 ~~~y~~A~~~~~~al~~~~-----~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~-~~g~  380 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGK-----LGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNL-ELGD  380 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCC-----CChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HCCC
Confidence            3566666666544321110     0011334556667777777777777777777632        123334455 5677


Q ss_pred             HHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH----HH-HH---HHHHcchhhHHhhhhh--h
Q psy12373         91 IRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ----DA-FN---LSQQHKKLHEFGKFLL--E  155 (198)
Q Consensus        91 ~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~----~A-~~---la~~~~~~~~~~~~~~--l  155 (198)
                      +++|.....+    .| ++.....+|..+...|++++|+..|.++-...    .+ +.   +....|.++.....+.  +
T Consensus       381 ~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al  460 (615)
T TIGR00990       381 PDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRCK  460 (615)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            7777665432    22 24555567777777788888887776663211    11 11   1122233322222210  2


Q ss_pred             c-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        156 E-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       156 ~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      . .+..+..+..++..+...|++++|
T Consensus       461 ~~~P~~~~~~~~lg~~~~~~g~~~~A  486 (615)
T TIGR00990       461 KNFPEAPDVYNYYGELLLDQNKFDEA  486 (615)
T ss_pred             HhCCCChHHHHHHHHHHHHccCHHHH
Confidence            2 345688888888888888888888

>KOG1920|consensus

Probab=98.21  E-value=2.2e-05  Score=74.02  Aligned_cols=95  Identities=16%  Similarity=0.203  Sum_probs=77.0

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChH-HH---HHHHHHHHHcCCHHHHHH-HHHHhcCHHHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SAT-TF---IQYAKAKEAMGSYRESVG-AYERAEDYDNV   80 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~-l~---~~~A~~~e~~g~~~~A~~-~Y~ka~~~~~a   80 (198)
                      .++++|+-+|+++|+.++|++.|..+++|..+..++...+ +.. +.   ..++.-+-..+.+-+|.+ .-+-+++++.|
T Consensus       953 ~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~a 1032 (1265)
T KOG1920|consen  953 LMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEEA 1032 (1265)
T ss_pred             ccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHHH
Confidence            6789999999999999999999999999999999988654 233 22   455555556666555554 55667899999


Q ss_pred             HHHHhhccCCHHHHHHHHHhcC
Q psy12373         81 VRVDLDHLNDIRHAVDIVKAKK  102 (198)
Q Consensus        81 v~l~~~~~~~~~~a~~l~~~~~  102 (198)
                      |.++| ....|++|.++|..+.
T Consensus      1033 v~ll~-ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1033 VALLC-KAKEWEEALRVASKAK 1053 (1265)
T ss_pred             HHHHh-hHhHHHHHHHHHHhcc
Confidence            99999 8899999999998776

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.20  E-value=0.00022  Score=54.96  Aligned_cols=109  Identities=15%  Similarity=0.129  Sum_probs=69.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVD   84 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~   84 (198)
                      +..|...|++++|++.+.++-      ..  ...+...+..+|..+...|++++|+++|.++-..        .....++
T Consensus        38 a~~~~~~~~~~~A~~~~~~~l------~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  109 (234)
T TIGR02521        38 ALGYLEQGDLEVAKENLDKAL------EH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFL  109 (234)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH------Hh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            455556666666666665431      11  1235567778889999999999999998877432        2234455


Q ss_pred             hhccCCHHHHHHHHHhcC-------CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         85 LDHLNDIRHAVDIVKAKK-------CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        85 ~~~~~~~~~a~~l~~~~~-------~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      . ..|++++|.....+.-       .......++..+...|++++|+.+|.++
T Consensus       110 ~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  161 (234)
T TIGR02521       110 C-QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRA  161 (234)
T ss_pred             H-HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5 6688888877665421       1223345677777778887777777664

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4626|consensus

Probab=98.18  E-value=6.8e-05  Score=67.14  Aligned_cols=132  Identities=16%  Similarity=0.207  Sum_probs=76.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--HHHH------HHHhhccCCHHHHHHHHHh----cCC-HHHHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDY--DNVV------RVDLDHLNDIRHAVDIVKA----KKC-TEGAKRIADYC  114 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--~~av------~l~~~~~~~~~~a~~l~~~----~~~-~~~~~~~A~~~  114 (198)
                      .+.+..+|..+...+.|+.|+.+|++|-..  ..|+      -+|. ..|.+|-|++.=++    .|. +++...+|+.+
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYy-eqG~ldlAI~~Ykral~~~P~F~~Ay~NlanAL  330 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYY-EQGLLDLAIDTYKRALELQPNFPDAYNNLANAL  330 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEe-ccccHHHHHHHHHHHHhcCCCchHHHhHHHHHH
Confidence            467788899999999999999999988532  1222      2233 34666666544332    233 44555788888


Q ss_pred             HhcCCHHHHHHHHHHcCC----hHHHH----HHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        115 NKHGDFGAAIHFLILSKC----YQDAF----NLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       115 ~~~g~~~~Av~~y~~ag~----~~~A~----~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ...|++.+|+..|.+|=.    +-+|+    .+..+.++++....+-.  +. .+.-...+..+|..|.++|++.+|
T Consensus       331 kd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~A  407 (966)
T KOG4626|consen  331 KDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDA  407 (966)
T ss_pred             HhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHH
Confidence            888888888888876633    11221    11223333322211111  11 123345666777777777777777

>KOG1840|consensus

Probab=98.12  E-value=0.00011  Score=65.18  Aligned_cols=168  Identities=17%  Similarity=0.124  Sum_probs=92.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH-------------
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD-------------   78 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~-------------   78 (198)
                      .+.+|...+.++.|+.+|.++-+......=-.+.....++..+|..+-+.|.+++|..++.++=++.             
T Consensus       247 ~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~  326 (508)
T KOG1840|consen  247 LALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAA  326 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHH
Confidence            3444444455555555544432222210000011245677788888888899888888888875442             


Q ss_pred             ---HHHHHHhhccCCHHHHHHHHHhc-------CC-----HH-HHHHHHHHHHhcCCHHHHHHHHHHcCCh---------
Q psy12373         79 ---NVVRVDLDHLNDIRHAVDIVKAK-------KC-----TE-GAKRIADYCNKHGDFGAAIHFLILSKCY---------  133 (198)
Q Consensus        79 ---~av~l~~~~~~~~~~a~~l~~~~-------~~-----~~-~~~~~A~~~~~~g~~~~Av~~y~~ag~~---------  133 (198)
                         +..-+++ ..|+.+.|..+....       +.     .. .-..+|.-+...|.+++|.++|.+|=..         
T Consensus       327 ~l~~~~~~~~-~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~  405 (508)
T KOG1840|consen  327 QLSELAAILQ-SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD  405 (508)
T ss_pred             HHHHHHHHHH-HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence               2233344 567777776665421       11     11 1225677788889998888888776221         


Q ss_pred             -HHH---HHHH---HHcchhh----HHh---hhh-hhcC--CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        134 -QDA---FNLS---QQHKKLH----EFG---KFL-LEED--EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       134 -~~A---~~la---~~~~~~~----~~~---~~~-~l~~--~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                       ..+   -.|+   .+.+...    .+.   .|+ ..++  +.+..++..+|..|...|+|+.|
T Consensus       406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a  469 (508)
T KOG1840|consen  406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAA  469 (508)
T ss_pred             hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHH
Confidence             111   0111   1111111    111   111 1233  35577999999999999999999

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.10  E-value=0.00097  Score=57.68  Aligned_cols=174  Identities=7%  Similarity=-0.023  Sum_probs=86.4

Q ss_pred             cchHHHHHHHHHHcCC----HH-----HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESAGN----YE-----KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAY   71 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~----~~-----~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y   71 (198)
                      .|.++.|.++|.++..    ..     .+.+++...|+++.|...++.     .+++..+..++..+...|+|++|++.+
T Consensus       131 ~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l  210 (398)
T PRK10747        131 RGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDIL  210 (398)
T ss_pred             CCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            3566666666665422    11     235566666677666555542     125566666666677777777777555


Q ss_pred             HHhcCH-----HH-------H----HHHHhhccCCHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         72 ERAEDY-----DN-------V----VRVDLDHLNDIRHAVDIVKAKK-----CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        72 ~ka~~~-----~~-------a----v~l~~~~~~~~~~a~~l~~~~~-----~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .+....     ..       +    +.... ...+.+...++.+..|     ++.....+|+.+...|+.++|.....++
T Consensus       211 ~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~-~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~  289 (398)
T PRK10747        211 PSMAKAHVGDEEHRAMLEQQAWIGLMDQAM-ADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDG  289 (398)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            554411     10       0    11111 1112222333322221     3444455677777777777666555433


Q ss_pred             CC---hHHHHHHHHH--cchhhHHhhhh-h-hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        131 KC---YQDAFNLSQQ--HKKLHEFGKFL-L-EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 g~---~~~A~~la~~--~~~~~~~~~~~-~-l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      =.   ....+.+.-+  .+..+..-+.+ . +. .+.+|..+..+|+.+...++|++|
T Consensus       290 l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A  347 (398)
T PRK10747        290 LKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEA  347 (398)
T ss_pred             HhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            22   1111211111  12221111111 0 22 356788888888888888888888

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=98.07  E-value=0.00045  Score=53.22  Aligned_cols=151  Identities=15%  Similarity=0.066  Sum_probs=97.9

Q ss_pred             cchHHHHHHHHHHcC--CH------HHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESAG--NY------EKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE   72 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g--~~------~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~   72 (198)
                      .|.+++|.+.|+++=  ++      .....+|...|+++.+.....+     ..++.....+|..+...|++++|+++|.
T Consensus        44 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  123 (234)
T TIGR02521        44 QGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFE  123 (234)
T ss_pred             CCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHH
Confidence            377888888887642  11      2234566777888887666642     2356778889999999999999999999


Q ss_pred             HhcC----------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHH
Q psy12373         73 RAED----------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAF  137 (198)
Q Consensus        73 ka~~----------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~  137 (198)
                      ++-.          +.....++. ..|++++|.....+    .| ++.....+|..+...|++++|+.++.++-.     
T Consensus       124 ~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~-----  197 (234)
T TIGR02521       124 QAIEDPLYPQPARSLENAGLCAL-KAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAYLERYQQ-----  197 (234)
T ss_pred             HHHhccccccchHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Confidence            9742          122344555 67899998876653    22 233444567777777777777666554322     


Q ss_pred             HHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        138 NLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       138 ~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                                       + .+.++..+...+..+...|++++|
T Consensus       198 -----------------~-~~~~~~~~~~~~~~~~~~~~~~~a  222 (234)
T TIGR02521       198 -----------------T-YNQTAESLWLGIRIARALGDVAAA  222 (234)
T ss_pred             -----------------h-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence                             1 122455555666666666766666

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4626|consensus

Probab=98.04  E-value=0.00013  Score=65.40  Aligned_cols=166  Identities=14%  Similarity=0.187  Sum_probs=99.6

Q ss_pred             HHHHHcCCHHHHHHHHHHccC---------------------HHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHH
Q psy12373         14 TLYESAGNYEKAATCYIQLKN---------------------WTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRES   67 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~---------------------~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A   67 (198)
                      ..|..++.+++|+.+|.++-+                     .+.|.+-.++     ..=+..+..+|..+...|+..+|
T Consensus       260 nV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea  339 (966)
T KOG4626|consen  260 NVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEA  339 (966)
T ss_pred             HHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHH
Confidence            446667788888888876522                     2333333221     11356777889999999999999


Q ss_pred             HHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHhc----CCH-HHHHHHHHHHHhcCCHHHHHHHHHHcCChH
Q psy12373         68 VGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKAK----KCT-EGAKRIADYCNKHGDFGAAIHFLILSKCYQ  134 (198)
Q Consensus        68 ~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~----~~~-~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~  134 (198)
                      +.+|.++-.+        .+.-.++. ..|.+++|.++-+..    |.. +..-.+|..|..+|.+++||..|..+=+..
T Consensus       340 ~~cYnkaL~l~p~hadam~NLgni~~-E~~~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~  418 (966)
T KOG4626|consen  340 VDCYNKALRLCPNHADAMNNLGNIYR-EQGKIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALRIK  418 (966)
T ss_pred             HHHHHHHHHhCCccHHHHHHHHHHHH-HhccchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence            9999887532        33445555 457777777765432    222 233467888888899999988887665532


Q ss_pred             HHHHH--------HHHcchhhHHhhhh--hhc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        135 DAFNL--------SQQHKKLHEFGKFL--LEE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       135 ~A~~l--------a~~~~~~~~~~~~~--~l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      --|.=        +++-|..+......  .+. .+.-.+.+..+|..|.+.|+..+|
T Consensus       419 P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~A  475 (966)
T KOG4626|consen  419 PTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEA  475 (966)
T ss_pred             chHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHH
Confidence            22111        22223222111111  011 223466788888888888888777

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=98.00  E-value=0.00082  Score=64.40  Aligned_cols=148  Identities=10%  Similarity=0.009  Sum_probs=88.0

Q ss_pred             HccCHHHHHhhhhc----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----HHHHHHHhhcc---CCHHHHHHHH
Q psy12373         31 QLKNWTKIGQLLPH----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY-----DNVVRVDLDHL---NDIRHAVDIV   98 (198)
Q Consensus        31 ~~~~~~~a~~l~~~----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----~~av~l~~~~~---~~~~~a~~l~   98 (198)
                      ..|+++.|....++    .+........|..+...|++++|+.+|.++-..     .....+.. ..   |++++|....
T Consensus       521 ~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~-~l~~~Gr~~eAl~~~  599 (987)
T PRK09782        521 QVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHA-QRYIPGQPELALNDL  599 (987)
T ss_pred             HCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHH-HHHhCCCHHHHHHHH
Confidence            44555554444332    123344566788888888998888888776432     12222222 33   8888887765


Q ss_pred             Hh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH--H--H-H---HHHHHcchhhHH----hhhhhhcCCCCHH
Q psy12373         99 KA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ--D--A-F---NLSQQHKKLHEF----GKFLLEEDEPNPV  162 (198)
Q Consensus        99 ~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~--~--A-~---~la~~~~~~~~~----~~~~~l~~~~~~~  162 (198)
                      ++    .|++.....+|..+.+.|++++|+..|.++=..+  .  + .   .+..+.|.++..    ..++.+ .+.++.
T Consensus       600 ~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~  678 (987)
T PRK09782        600 TRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPA  678 (987)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHH
Confidence            43    3555555577888888899988888776543311  0  0 0   111222332221    222112 346788


Q ss_pred             HHHHHHHHHHhCCChhhH
Q psy12373        163 ELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       163 ~~~~~A~~~e~~g~~~~A  180 (198)
                      .+..+|..+...|++++|
T Consensus       679 a~~nLA~al~~lGd~~eA  696 (987)
T PRK09782        679 LIRQLAYVNQRLDDMAAT  696 (987)
T ss_pred             HHHHHHHHHHHCCCHHHH
Confidence            999999999999998888

>KOG0985|consensus

Probab=97.95  E-value=0.00096  Score=62.80  Aligned_cols=139  Identities=12%  Similarity=0.158  Sum_probs=110.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHcc----CH-------------------HHHHhhhhccC--ChHHHHHHHHHHHHcCCHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLK----NW-------------------TKIGQLLPHIK--SATTFIQYAKAKEAMGSYR   65 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~----~~-------------------~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~   65 (198)
                      -..+.|..++-+...|++..+.-    -|                   .++.+.+.+++  |.+   .+|...-+.+.|+
T Consensus       989 ~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdnyDa~---~ia~iai~~~LyE 1065 (1666)
T KOG0985|consen  989 VTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNYDAP---DIAEIAIENQLYE 1065 (1666)
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccCCch---hHHHHHhhhhHHH
Confidence            35677888888888888877541    11                   12233333333  222   4677788899999


Q ss_pred             HHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC---hHHHHHHHHH
Q psy12373         66 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC---YQDAFNLSQQ  142 (198)
Q Consensus        66 ~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~---~~~A~~la~~  142 (198)
                      +|-..|.+-....+||.+++++.+..|+|...+.+-..|++-.++|+.-...|.+.+||+-|+||.+   |.+.+++|.+
T Consensus      1066 EAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikadDps~y~eVi~~a~~ 1145 (1666)
T KOG0985|consen 1066 EAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKADDPSNYLEVIDVASR 1145 (1666)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcCCcHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988999999999999999999999987   5567888888


Q ss_pred             cchhhHHhhh
Q psy12373        143 HKKLHEFGKF  152 (198)
Q Consensus       143 ~~~~~~~~~~  152 (198)
                      .+.++.+..-
T Consensus      1146 ~~~~edLv~y 1155 (1666)
T KOG0985|consen 1146 TGKYEDLVKY 1155 (1666)
T ss_pred             cCcHHHHHHH
Confidence            8888655443

>KOG1840|consensus

Probab=97.94  E-value=0.0002  Score=63.68  Aligned_cols=145  Identities=21%  Similarity=0.213  Sum_probs=88.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc------cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH------IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~------~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      -+.+|...|++++|+..+..+-      +++.+      ..-...+.++|..+-+.+.+.+|+.+|.+|      +.+..
T Consensus       205 La~~y~~~g~~e~A~~l~k~Al------~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A------L~i~e  272 (508)
T KOG1840|consen  205 LAEMYAVQGRLEKAEPLCKQAL------RILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA------LTIRE  272 (508)
T ss_pred             HHHHHHHhccHHHHHHHHHHHH------HHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH------HHHHH
Confidence            6777888888888888876552      22221      113345557999999999999999999998      55554


Q ss_pred             hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHH-----------------------------HHHHHHHHcCChHHH
Q psy12373         86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFG-----------------------------AAIHFLILSKCYQDA  136 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~-----------------------------~Av~~y~~ag~~~~A  136 (198)
                      +..|.-+.++..+        ...+|..|-+.|++.                             .....+...+.+++|
T Consensus       273 ~~~G~~h~~va~~--------l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea  344 (508)
T KOG1840|consen  273 EVFGEDHPAVAAT--------LNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEA  344 (508)
T ss_pred             HhcCCCCHHHHHH--------HHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHH
Confidence            4444433222111        112333333344433                             344455555666666


Q ss_pred             HHHHHHcchhhHHhhhhhhcC--CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        137 FNLSQQHKKLHEFGKFLLEED--EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       137 ~~la~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..+++..  ...+..+  .+.  ...+..+.++|..|...|+|.+|
T Consensus       345 ~~l~q~a--l~i~~~~--~g~~~~~~a~~~~nl~~l~~~~gk~~ea  386 (508)
T KOG1840|consen  345 KKLLQKA--LKIYLDA--PGEDNVNLAKIYANLAELYLKMGKYKEA  386 (508)
T ss_pred             HHHHHHH--HHHHHhh--ccccchHHHHHHHHHHHHHHHhcchhHH
Confidence            6666533  1222222  232  25678888899988888888888

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.91  E-value=0.0011  Score=48.99  Aligned_cols=99  Identities=23%  Similarity=0.195  Sum_probs=71.2

Q ss_pred             HccCHHHHHh----hhhccC-C---hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCH
Q psy12373         31 QLKNWTKIGQ----LLPHIK-S---ATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDI   91 (198)
Q Consensus        31 ~~~~~~~a~~----l~~~~~-~---~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~   91 (198)
                      ..+++..+..    ++...+ +   ......+|+.+...|++++|++.|.++-+-           .+..++++ ..|++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~-~~~~~  101 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILL-QQGQY  101 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH-HcCCH
Confidence            3566665544    333333 2   345557899999999999999999887632           23456777 78999


Q ss_pred             HHHHHHHHhcCCH----HHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         92 RHAVDIVKAKKCT----EGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        92 ~~a~~l~~~~~~~----~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ++|..+....+++    ......|..+...|++++|+..|.+|
T Consensus       102 d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  102 DEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            9999998764332    23345788899999999999999875

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=97.88  E-value=0.004  Score=59.83  Aligned_cols=131  Identities=10%  Similarity=-0.062  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcC-------HHHHHHHHhhccCCHHHHHHHHHhc----CCH-HHHHHHHHHHHh
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAED-------YDNVVRVDLDHLNDIRHAVDIVKAK----KCT-EGAKRIADYCNK  116 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------~~~av~l~~~~~~~~~~a~~l~~~~----~~~-~~~~~~A~~~~~  116 (198)
                      .....+|..+...|++++|+..|.++..       +.....++. ..|++++|....++.    |+. .....++..+..
T Consensus       510 ~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all-~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~  588 (987)
T PRK09782        510 WQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQ-AAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYI  588 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            3455668888999999999999998754       223345566 679999988876532    221 122234445556


Q ss_pred             cCCHHHHHHHHHHcCCh-------HHHHHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        117 HGDFGAAIHFLILSKCY-------QDAFNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       117 ~g~~~~Av~~y~~ag~~-------~~A~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .|++++|+.+|.++=..       ...-.++.+.|..+.....+.  +. .+.++..+..++..+.+.|++++|
T Consensus       589 ~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA  662 (987)
T PRK09782        589 PGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS  662 (987)
T ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence            69999999998877531       111233344555543333321  22 456789999999999999999888

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=97.82  E-value=0.0034  Score=54.35  Aligned_cols=149  Identities=14%  Similarity=0.117  Sum_probs=98.2

Q ss_pred             HccCHHHHHhhhhcc----CChHHHHHH-HHHHHHcCCHHHHHHHHHHhcCH----H-----HHHHHHhhccCCHHHHHH
Q psy12373         31 QLKNWTKIGQLLPHI----KSATTFIQY-AKAKEAMGSYRESVGAYERAEDY----D-----NVVRVDLDHLNDIRHAVD   96 (198)
Q Consensus        31 ~~~~~~~a~~l~~~~----~~~~l~~~~-A~~~e~~g~~~~A~~~Y~ka~~~----~-----~av~l~~~~~~~~~~a~~   96 (198)
                      -.|+|++|.+++...    +.+.+..-+ |......|+++.|.++|.++...    .     .+.+++. ..|+++.|..
T Consensus        96 ~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l-~~g~~~~Al~  174 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQL-ARNENHAARH  174 (398)
T ss_pred             hCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHH-HCCCHHHHHH
Confidence            357777776666532    245666656 55559999999999999997642    1     2356788 7899999988


Q ss_pred             HHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC---hHHH--H--------HH---HHHcchhhHHhhhh-h
Q psy12373         97 IVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC---YQDA--F--------NL---SQQHKKLHEFGKFL-L  154 (198)
Q Consensus        97 l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~---~~~A--~--------~l---a~~~~~~~~~~~~~-~  154 (198)
                      ..++    .| ++.+...++..+...|++++|++++.+...   .+..  -        .+   .......+.+..++ .
T Consensus       175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~  254 (398)
T PRK10747        175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN  254 (398)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            7754    33 356666788889999999999966655543   2111  1        11   11111122223322 1


Q ss_pred             hc--CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        155 EE--DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       155 l~--~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.  ...+|.....+|..+...|+..+|
T Consensus       255 lp~~~~~~~~~~~~~A~~l~~~g~~~~A  282 (398)
T PRK10747        255 QSRKTRHQVALQVAMAEHLIECDDHDTA  282 (398)
T ss_pred             CCHHHhCCHHHHHHHHHHHHHCCCHHHH
Confidence            22  245788999999999999999988

>PRK11189 lipoprotein NlpI; Provisional

Probab=97.81  E-value=0.0014  Score=54.38  Aligned_cols=158  Identities=13%  Similarity=-0.066  Sum_probs=94.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVD   84 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~   84 (198)
                      +.+|...|+++.|+..|.++      ..+  ..+++..+..+|..+...|++++|++.|.++=..        .....++
T Consensus        71 g~~~~~~g~~~~A~~~~~~A------l~l--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l  142 (296)
T PRK11189         71 GVLYDSLGLRALARNDFSQA------LAL--RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIAL  142 (296)
T ss_pred             HHHHHHCCCHHHHHHHHHHH------HHc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            33455556666665544332      222  2347789999999999999999999999998432        2222334


Q ss_pred             hhccCCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC------ChHHHHHHHHHcchh---hHHhh
Q psy12373         85 LDHLNDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSK------CYQDAFNLSQQHKKL---HEFGK  151 (198)
Q Consensus        85 ~~~~~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag------~~~~A~~la~~~~~~---~~~~~  151 (198)
                      . ..|++++|++..+.    .|+......+.......+++++|+..|.++-      .|.-++.. ...+..   +.+..
T Consensus       143 ~-~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~~~~~~-~~lg~~~~~~~~~~  220 (296)
T PRK11189        143 Y-YGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWGWNIVE-FYLGKISEETLMER  220 (296)
T ss_pred             H-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccHHHHHH-HHccCCCHHHHHHH
Confidence            4 67999999877654    2322112233334566788999999995422      12111111 112221   11222


Q ss_pred             hhh-hc-----CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        152 FLL-EE-----DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       152 ~~~-l~-----~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.. +.     .+..++.+..+|..++..|++++|
T Consensus       221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A  255 (296)
T PRK11189        221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEA  255 (296)
T ss_pred             HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            210 11     123457899999999999999999

>KOG0276|consensus

Probab=97.80  E-value=0.00045  Score=61.67  Aligned_cols=130  Identities=12%  Similarity=0.115  Sum_probs=97.6

Q ss_pred             cCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHH
Q psy12373         19 AGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIV   98 (198)
Q Consensus        19 ~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~   98 (198)
                      +.|++.=-++-.++|+.+-|..|+.+.++..=..++|+..-+.|++..|.+||.++.|+.+.+=++- -.|+-+....++
T Consensus       637 s~D~d~rFelal~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t-~~g~~~~l~~la  715 (794)
T KOG0276|consen  637 STDPDQRFELALKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARDLGSLLLLYT-SSGNAEGLAVLA  715 (794)
T ss_pred             CCChhhhhhhhhhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhh-hcCChhHHHHHH
Confidence            3444444456677888888888888888888888999999999999999999999999999998888 778877655555


Q ss_pred             Hhc---CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373         99 KAK---KCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL  153 (198)
Q Consensus        99 ~~~---~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~  153 (198)
                      ...   .....+ .++  +-..|++++.++++++.+++.+|.=+|..+.- +...+++
T Consensus       716 ~~~~~~g~~N~A-F~~--~~l~g~~~~C~~lLi~t~r~peAal~ArtYlp-s~vs~iv  769 (794)
T KOG0276|consen  716 SLAKKQGKNNLA-FLA--YFLSGDYEECLELLISTQRLPEAALFARTYLP-SQVSRIV  769 (794)
T ss_pred             HHHHhhcccchH-HHH--HHHcCCHHHHHHHHHhcCcCcHHHHHHhhhCh-HHHHHHH
Confidence            432   211111 122  23569999999999999999999888887754 4445554

>KOG1586|consensus

Probab=97.79  E-value=0.00059  Score=54.55  Aligned_cols=48  Identities=25%  Similarity=0.439  Sum_probs=35.0

Q ss_pred             HHHHHHHHHHHHc-CCHHHHHHHHHHhcCH--------------HHHHHHHhhccCCHHHHHHH
Q psy12373         49 TTFIQYAKAKEAM-GSYRESVGAYERAEDY--------------DNVVRVDLDHLNDIRHAVDI   97 (198)
Q Consensus        49 ~l~~~~A~~~e~~-g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~~~~a~~l   97 (198)
                      ..+..+|.++|+. .+++.||.+|+.+++|              .++....- .+++..+|+++
T Consensus       114 k~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa-~leqY~~Ai~i  176 (288)
T KOG1586|consen  114 KHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAA-QLEQYSKAIDI  176 (288)
T ss_pred             hhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            4456789999988 9999999999999987              12222222 56677777766

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=97.70  E-value=0.0019  Score=59.72  Aligned_cols=143  Identities=10%  Similarity=-0.012  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------H
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------D   78 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~   78 (198)
                      ...++.+..++.|...++.+-.-+      +..+++. .++.+.+..+|+.....|.+++|...+.++=.+        .
T Consensus        51 ~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~  124 (694)
T PRK15179         51 LLQQARQVLERHAAVHKPAAALPE------LLDYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFI  124 (694)
T ss_pred             HHHHHHHHHHHhhhhcchHhhHHH------HHHHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHH
Confidence            345566666666666555544332      3333433 347899999999999999999999999998643        2


Q ss_pred             HHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373         79 NVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL  153 (198)
Q Consensus        79 ~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~  153 (198)
                      .-.+++. +.+++++|...+++.    | +.......|..+...|++++|+.+|.++-.                     
T Consensus       125 ~~a~~L~-~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~---------------------  182 (694)
T PRK15179        125 LMLRGVK-RQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSR---------------------  182 (694)
T ss_pred             HHHHHHH-HhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh---------------------
Confidence            3355666 789999998887653    3 345566789999999999999999987642                     


Q ss_pred             hhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        154 LEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       154 ~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                        ..+..++.+...|..++..|+.++|
T Consensus       183 --~~p~~~~~~~~~a~~l~~~G~~~~A  207 (694)
T PRK15179        183 --QHPEFENGYVGWAQSLTRRGALWRA  207 (694)
T ss_pred             --cCCCcHHHHHHHHHHHHHcCCHHHH
Confidence              1123456666666666666666666

>TIGR00540 hemY_coli hemY protein

Probab=97.69  E-value=0.0077  Score=52.26  Aligned_cols=174  Identities=9%  Similarity=0.029  Sum_probs=96.6

Q ss_pred             chHHHHHHHHHHc----CCHH----H-HHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESA----GNYE----K-AATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE   72 (198)
Q Consensus         7 ~~~~~Aa~~y~~~----g~~~----~-Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~   72 (198)
                      |.++.|.++|.++    ++..    . ..+++...|+++.|...+..     ..++.++..++..+...|+|++|.+.+.
T Consensus       132 g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~  211 (409)
T TIGR00540       132 GDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIID  211 (409)
T ss_pred             CCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            6677777777663    3322    1 36666677888776555542     2366777788888888888887777766


Q ss_pred             HhcC-----HHHHH----HHHhh------ccCCHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         73 RAED-----YDNVV----RVDLD------HLNDIRHAVDIVKAKK-----CTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        73 ka~~-----~~~av----~l~~~------~~~~~~~a~~l~~~~~-----~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      +...     .....    .....      .....+...++....|     ++.....+|..+...|++++|++...++=.
T Consensus       212 ~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~  291 (409)
T TIGR00540       212 NMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK  291 (409)
T ss_pred             HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh
Confidence            6541     12111    11110      0111223333344444     445555677778888888888877776643


Q ss_pred             --hHHH------HHHHHHc--chhhHHhhhhh--hc-CCCCH--HHHHHHHHHHHhCCChhhH
Q psy12373        133 --YQDA------FNLSQQH--KKLHEFGKFLL--EE-DEPNP--VELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       133 --~~~A------~~la~~~--~~~~~~~~~~~--l~-~~~~~--~~~~~~A~~~e~~g~~~~A  180 (198)
                        |+..      ++.+..-  +..+...+.+.  +. .+.+|  .....+|..+...|+|++|
T Consensus       292 ~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A  354 (409)
T TIGR00540       292 KLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEA  354 (409)
T ss_pred             hCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHH
Confidence              2222      2211111  11111222211  22 35567  7777888888888888887

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.66  E-value=0.022  Score=53.46  Aligned_cols=123  Identities=12%  Similarity=0.071  Sum_probs=70.4

Q ss_pred             chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc---c--CChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH---I--KSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~---~--~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |.+++|.++|.++..        ......++...+++..|..+...   .  .++.....+|..+...|++++|+.++.+
T Consensus        29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~  108 (765)
T PRK10049         29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ  108 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            566666666666543        23344456666777766666554   2  2556666777777777777777777766


Q ss_pred             hcC-------HHHHHHHHhhccCCHHHHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         74 AED-------YDNVVRVDLDHLNDIRHAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        74 a~~-------~~~av~l~~~~~~~~~~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +-.       +.....++. ..|+.++|....++    .|+ +.....++..+...|+.++|+..+.++
T Consensus       109 ~l~~~P~~~~~~~la~~l~-~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~  176 (765)
T PRK10049        109 LVSGAPDKANLLALAYVYK-RAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAIDDA  176 (765)
T ss_pred             HHHhCCCCHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHHhC
Confidence            521       222233344 56777776655432    232 333345566666666666666665543

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.65  E-value=0.00037  Score=45.75  Aligned_cols=69  Identities=20%  Similarity=0.427  Sum_probs=52.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ..++..+|..+...|+|++|+++|.++      +++.. ..|+...  .+      ......+|..+...|++++|+++|
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~a------l~~~~-~~~~~~~--~~------a~~~~~lg~~~~~~g~~~~A~~~~   69 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKA------LDIEE-QLGDDHP--DT------ANTLNNLGECYYRLGDYEEALEYY   69 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHH------HHHHH-HTTTHHH--HH------HHHHHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHH-HHCCCCH--HH------HHHHHHHHHHHHHcCCHHHHHHHH
Confidence            356788999999999999999999999      88843 6666331  11      112447899999999999999998


Q ss_pred             HHcC
Q psy12373        128 ILSK  131 (198)
Q Consensus       128 ~~ag  131 (198)
                      .++=
T Consensus        70 ~~al   73 (78)
T PF13424_consen   70 QKAL   73 (78)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

...

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.63  E-value=2.6e-06  Score=62.91  Aligned_cols=96  Identities=19%  Similarity=0.253  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhc
Q psy12373         22 YEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAK  101 (198)
Q Consensus        22 ~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~  101 (198)
                      ....+.+|++.+..+++.+++...+.-+ ....++.++..|.+++|+-+|.+.|++.+|++++. .+++|+.|++.+.+.
T Consensus        45 ~~~L~~ly~~~~~~~~l~~~L~~~~~yd-~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~-~~~~~~~a~e~~~~~  122 (143)
T PF00637_consen   45 HTLLLELYIKYDPYEKLLEFLKTSNNYD-LDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILH-KLKDYEEAIEYAKKV  122 (143)
T ss_dssp             HHHHHHHHHCTTTCCHHHHTTTSSSSS--CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSS-STHCSCCCTTTGGGC
T ss_pred             HHHHHHHHHhcCCchHHHHHcccccccC-HHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHH-HHccHHHHHHHHHhc
Confidence            4678889999988888888888655311 13578889999999999999999999999999955 889999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCC
Q psy12373        102 KCTEGAKRIADYCNKHGD  119 (198)
Q Consensus       102 ~~~~~~~~~A~~~~~~g~  119 (198)
                      ++++....+.+++...+.
T Consensus       123 ~~~~l~~~l~~~~l~~~~  140 (143)
T PF00637_consen  123 DDPELWEQLLKYCLDSKP  140 (143)
T ss_dssp             SSSHHHHHHHHHHCTSTC
T ss_pred             CcHHHHHHHHHHHHhcCc
Confidence            999988888888876654

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG2003|consensus

Probab=97.60  E-value=0.0008  Score=58.54  Aligned_cols=83  Identities=22%  Similarity=0.290  Sum_probs=52.8

Q ss_pred             CCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHH
Q psy12373         20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK   99 (198)
Q Consensus        20 g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~   99 (198)
                      ||+++|++.|..+-+-+.        +-.+.+..+|-..+..|+.++|.++|.+.      --+++              
T Consensus       504 gd~dka~~~ykeal~nda--------sc~ealfniglt~e~~~~ldeald~f~kl------h~il~--------------  555 (840)
T KOG2003|consen  504 GDLDKAAEFYKEALNNDA--------SCTEALFNIGLTAEALGNLDEALDCFLKL------HAILL--------------  555 (840)
T ss_pred             CcHHHHHHHHHHHHcCch--------HHHHHHHHhcccHHHhcCHHHHHHHHHHH------HHHHH--------------
Confidence            556666665544322222        22355667777888888888888888775      11222              


Q ss_pred             hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373        100 AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       100 ~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                        .+.++..++|+.|+...+..+||++|..+..
T Consensus       556 --nn~evl~qianiye~led~aqaie~~~q~~s  586 (840)
T KOG2003|consen  556 --NNAEVLVQIANIYELLEDPAQAIELLMQANS  586 (840)
T ss_pred             --hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence              2445566788888888888888888777655

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=97.57  E-value=0.002  Score=47.29  Aligned_cols=63  Identities=16%  Similarity=0.252  Sum_probs=52.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCN  115 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~  115 (198)
                      ..++.++..+.+++++-+|.+.|.+..||+++++++++.+.|.+.+++..+++.-..+++++.
T Consensus        74 ~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~~~~~~~~~lw~~~~~~~l  136 (140)
T smart00299       74 KVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEYFVKQNNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            467788899999999999999999999999999666889999999988777777766666654

>PRK12370 invasion protein regulator; Provisional

Probab=97.53  E-value=0.0026  Score=57.38  Aligned_cols=65  Identities=6%  Similarity=-0.048  Sum_probs=45.7

Q ss_pred             HHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh
Q psy12373         35 WTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA  100 (198)
Q Consensus        35 ~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~  100 (198)
                      ++.|...+.+     .+++..+..+|..+...|++++|+.+|.++-..        ...-.++. ..|++++|....++
T Consensus       320 ~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~-~~G~~~eAi~~~~~  397 (553)
T PRK12370        320 MIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLF-MAGQLEEALQTINE  397 (553)
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence            5666555542     237788888999999999999999999986421        22234455 67888888776654

>KOG1585|consensus

Probab=97.50  E-value=0.0012  Score=53.15  Aligned_cols=97  Identities=21%  Similarity=0.209  Sum_probs=45.6

Q ss_pred             HHcCCHHHHHHHHHHccCHHHHHhhhhccC-----------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         17 ESAGNYEKAATCYIQLKNWTKIGQLLPHIK-----------SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        17 ~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-----------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      -.++.+++|.-.|..+++|+++...+.+..           ....+...|-.+.....+.+++.+|+|+      ..+|+
T Consensus        29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKA------s~lY~  102 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKA------SELYV  102 (308)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH------HHHHH
Confidence            334444455556666666666543322111           0112222233333444455555555555      66666


Q ss_pred             hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                       ..|.+|-|.--         ...-|+. .+..+++.|+++|.++
T Consensus       103 -E~GspdtAAma---------leKAak~-lenv~Pd~AlqlYqra  136 (308)
T KOG1585|consen  103 -ECGSPDTAAMA---------LEKAAKA-LENVKPDDALQLYQRA  136 (308)
T ss_pred             -HhCCcchHHHH---------HHHHHHH-hhcCCHHHHHHHHHHH
Confidence             44554432111         1122333 3455678888887764

>KOG2114|consensus

Probab=97.49  E-value=0.0048  Score=57.07  Aligned_cols=125  Identities=15%  Similarity=0.165  Sum_probs=81.4

Q ss_pred             CHHHHHHHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---HHHHHHHhhccCCHH
Q psy12373         21 NYEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDY---DNVVRVDLDHLNDIR   92 (198)
Q Consensus        21 ~~~~Ai~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---~~av~l~~~~~~~~~   92 (198)
                      +.+.-+.+.++-..|..|..|++..+     ...++..+|.++-..|++++|...|+++=.+   ...|.=+. ......
T Consensus       336 ~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfL-daq~Ik  414 (933)
T KOG2114|consen  336 DLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFL-DAQRIK  414 (933)
T ss_pred             cHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhc-CHHHHH
Confidence            55666778888888999999998654     4568889999999999999999999998644   34444444 222222


Q ss_pred             HHHHHHHhc-----CCHHHHHHHHH------------HHHhcCC-------HHHHHHHHHHcCChHHHHHHHHHcchh
Q psy12373         93 HAVDIVKAK-----KCTEGAKRIAD------------YCNKHGD-------FGAAIHFLILSKCYQDAFNLSQQHKKL  146 (198)
Q Consensus        93 ~a~~l~~~~-----~~~~~~~~~A~------------~~~~~g~-------~~~Av~~y~~ag~~~~A~~la~~~~~~  146 (198)
                      ....+....     .+.+....+=.            -|.+.++       ++.|++...+++..++|..||..+++-
T Consensus       415 nLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~h  492 (933)
T KOG2114|consen  415 NLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKH  492 (933)
T ss_pred             HHHHHHHHHHHcccccchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccC
Confidence            232222211     11111111111            2344444       778888888888888888888887763

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.48  E-value=0.0019  Score=47.85  Aligned_cols=87  Identities=17%  Similarity=0.122  Sum_probs=57.6

Q ss_pred             HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHH
Q psy12373         14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRH   93 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~   93 (198)
                      ..+.+.|+++.|+++|..+      .++  ...+...+..+|..+...|++++|+.+|.++      +.+--        
T Consensus        32 ~~~~~~g~~~~A~~~~~~a------l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~A------l~l~p--------   89 (144)
T PRK15359         32 YASWQEGDYSRAVIDFSWL------VMA--QPWSWRAHIALAGTWMMLKEYTTAINFYGHA------LMLDA--------   89 (144)
T ss_pred             HHHHHcCCHHHHHHHHHHH------HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHH------HhcCC--------
Confidence            3444455555555554332      111  2336777888888888888888888888887      43211        


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         94 AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        94 a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                              .++.....+|..+...|++++|+..|.++
T Consensus        90 --------~~~~a~~~lg~~l~~~g~~~eAi~~~~~A  118 (144)
T PRK15359         90 --------SHPEPVYQTGVCLKMMGEPGLAREAFQTA  118 (144)
T ss_pred             --------CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                    23455667888888999999999888665

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.42  E-value=0.0045  Score=50.75  Aligned_cols=99  Identities=10%  Similarity=0.070  Sum_probs=64.7

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      ..|+.|..++.+.|++++|+..|..      ......... .+..++|+|..+...|++++|+..|.+.      |..+-
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~------fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~v------v~~yP  211 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQN------FVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASV------VKNYP  211 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHH------HHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHCC
Confidence            3456666666666777777666421      122211111 3689999999999999999999998776      65554


Q ss_pred             hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +. .            ..++....+|..+...|++++|+..|.+.
T Consensus       212 ~s-~------------~~~dAl~klg~~~~~~g~~~~A~~~~~~v  243 (263)
T PRK10803        212 KS-P------------KAADAMFKVGVIMQDKGDTAKAKAVYQQV  243 (263)
T ss_pred             CC-c------------chhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            11 1            12344556777788888888888887643

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=97.40  E-value=0.013  Score=46.43  Aligned_cols=123  Identities=17%  Similarity=0.104  Sum_probs=71.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------HHHH----HHHhh-------ccCCHHHHHHHHH----hcCCHHH
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY-------DNVV----RVDLD-------HLNDIRHAVDIVK----AKKCTEG  106 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------~~av----~l~~~-------~~~~~~~a~~l~~----~~~~~~~  106 (198)
                      ..+..+|..+...|++++|+..|.++-..       ..+.    .++..       ..|++++|.+...    ..|+...
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  150 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY  150 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence            46678899999999999999999987321       0111    11110       1156666665543    3343221


Q ss_pred             ----HHHHHHHHHhcCCH-HHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcC--CCCHHHHHHHHHHHHhCCChhh
Q psy12373        107 ----AKRIADYCNKHGDF-GAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED--EPNPVELKRLAIHFEEDKGVLT  179 (198)
Q Consensus       107 ----~~~~A~~~~~~g~~-~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~e~~g~~~~  179 (198)
                          ...++......+.. ..-..+|.+.|++.+|+......         +..-+  +..++.+..++..+...|++++
T Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a---------l~~~p~~~~~~~a~~~l~~~~~~lg~~~~  221 (235)
T TIGR03302       151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV---------VENYPDTPATEEALARLVEAYLKLGLKDL  221 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH---------HHHCCCCcchHHHHHHHHHHHHHcCCHHH
Confidence                11122221111111 12335677888888887766433         11122  2347889999999999999988


Q ss_pred             H
Q psy12373        180 S  180 (198)
Q Consensus       180 A  180 (198)
                      |
T Consensus       222 A  222 (235)
T TIGR03302       222 A  222 (235)
T ss_pred             H
Confidence            8

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=97.28  E-value=0.016  Score=42.38  Aligned_cols=64  Identities=13%  Similarity=0.211  Sum_probs=46.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc-chhhHHhhhhhhcCCCCHHHHHHHHHHHHh
Q psy12373        108 KRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH-KKLHEFGKFLLEEDEPNPVELKRLAIHFEE  173 (198)
Q Consensus       108 ~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~  173 (198)
                      ..+++.|.+.+-+++++-+|.+.|.+.+|++++.++ +..+.+.+.  .....+|++...++.++.+
T Consensus        73 ~~~~~~c~~~~l~~~~~~l~~k~~~~~~Al~~~l~~~~d~~~a~~~--~~~~~~~~lw~~~~~~~l~  137 (140)
T smart00299       73 EKVGKLCEKAKLYEEAVELYKKDGNFKDAIVTLIEHLGNYEKAIEY--FVKQNNPELWAEVLKALLD  137 (140)
T ss_pred             HHHHHHHHHcCcHHHHHHHHHhhcCHHHHHHHHHHcccCHHHHHHH--HHhCCCHHHHHHHHHHHHc
Confidence            345666777777888888888888888888888777 555444443  3445678888888887754

>PRK12370 invasion protein regulator; Provisional

Probab=97.24  E-value=0.013  Score=52.93  Aligned_cols=124  Identities=9%  Similarity=-0.074  Sum_probs=86.9

Q ss_pred             chHHHHHHHHHHcCCH-----H---HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNY-----E---KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~-----~---~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      +.+++|...+.++=..     +   ....++...|+++.|...+++     .+++..+..+|..+...|++++|+.+|.+
T Consensus       318 ~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~  397 (553)
T PRK12370        318 NAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINE  397 (553)
T ss_pred             hHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4577888887765221     1   223356677888887766653     23677889999999999999999999999


Q ss_pred             hcCH--------HHHHHHHhhccCCHHHHHHHHHhc-----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         74 AEDY--------DNVVRVDLDHLNDIRHAVDIVKAK-----K-CTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        74 a~~~--------~~av~l~~~~~~~~~~a~~l~~~~-----~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                      +-..        .....++. ..|++++|...+++.     | .+.....+|..+...|++++|+..+.+.-
T Consensus       398 Al~l~P~~~~~~~~~~~~~~-~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~  468 (553)
T PRK12370        398 CLKLDPTRAAAGITKLWITY-YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIS  468 (553)
T ss_pred             HHhcCCCChhhHHHHHHHHH-hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhh
Confidence            7421        11122355 568999998877542     2 24445568888999999999999987643

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.23  E-value=0.021  Score=48.15  Aligned_cols=103  Identities=16%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             HHHcCCHHHHHHHHHHhcC-----HHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHH------------H-HHHHhcCC
Q psy12373         58 KEAMGSYRESVGAYERAED-----YDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRI------------A-DYCNKHGD  119 (198)
Q Consensus        58 ~e~~g~~~~A~~~Y~ka~~-----~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~------------A-~~~~~~g~  119 (198)
                      +-..|+...|.++-..-+=     |---|+.++ ..++|++..+.+..-.+|-.....            | +|..+..+
T Consensus       187 li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa-~~~~w~eL~~fa~skKsPIGyepFv~~~~~~~~~~eA~~yI~k~~~  265 (319)
T PF04840_consen  187 LIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALA-ENKDWDELEKFAKSKKSPIGYEPFVEACLKYGNKKEASKYIPKIPD  265 (319)
T ss_pred             HHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCCHHHHHHHHhCCCCCCChHHHHHHHHHCCCHHHHHHHHHhCCh
Confidence            3456777777766444332     233477777 679999999988754444322222            2 23333444


Q ss_pred             HHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHH
Q psy12373        120 FGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPV  162 (198)
Q Consensus       120 ~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~  162 (198)
                       ++-+++|+++|.|.+|++.|.+.+..+.+..+....+..++.
T Consensus       266 -~~rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~~~~~~  307 (319)
T PF04840_consen  266 -EERVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCPGNNDQ  307 (319)
T ss_pred             -HHHHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCCCCChH
Confidence             788999999999999999999999988888875333333333

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>TIGR00540 hemY_coli hemY protein

Probab=97.23  E-value=0.036  Score=48.08  Aligned_cols=151  Identities=13%  Similarity=0.082  Sum_probs=96.9

Q ss_pred             HHHccCHHHHHhhhhc----cCChHHHH-HHHHHHHHcCCHHHHHHHHHHh----cCHH-----HHHHHHhhccCCHHHH
Q psy12373         29 YIQLKNWTKIGQLLPH----IKSATTFI-QYAKAKEAMGSYRESVGAYERA----EDYD-----NVVRVDLDHLNDIRHA   94 (198)
Q Consensus        29 y~~~~~~~~a~~l~~~----~~~~~l~~-~~A~~~e~~g~~~~A~~~Y~ka----~~~~-----~av~l~~~~~~~~~~a   94 (198)
                      -...|+|..|.+.+.+    .+++.+.. ..|+.....|+++.|.++|.++    ++..     ...++++ ..|+++.|
T Consensus        94 a~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l-~~~~~~~A  172 (409)
T TIGR00540        94 KLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL-AQNELHAA  172 (409)
T ss_pred             HHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH-HCCCHHHH
Confidence            3355677776555542    23444444 4488899999999999999995    3322     1367777 67999998


Q ss_pred             HHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh-----HHHHH---HHH--------HcchhhHHhhhh
Q psy12373         95 VDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCY-----QDAFN---LSQ--------QHKKLHEFGKFL  153 (198)
Q Consensus        95 ~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~-----~~A~~---la~--------~~~~~~~~~~~~  153 (198)
                      ....+.    .| ++.+...++..+...||+++|++++.+..+.     .+...   .+.        .....+.+..+.
T Consensus       173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            876643    34 4566678899999999999888777655521     11111   111        111112223322


Q ss_pred             hhcC---CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        154 LEED---EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       154 ~l~~---~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ...+   ..++......|..+...|++++|
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A  282 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSA  282 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHH
Confidence            1111   14789999999999999999998

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.20  E-value=0.0034  Score=45.21  Aligned_cols=88  Identities=18%  Similarity=0.197  Sum_probs=53.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR   92 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~   92 (198)
                      +..|.+.|+++.|++++.+.      ..+  ...++.....+|..+...|++++|+.+|.++      +.+.        
T Consensus        24 a~~~~~~~~~~~A~~~~~~~------~~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~------~~~~--------   81 (135)
T TIGR02552        24 AYNLYQQGRYDEALKLFQLL------AAY--DPYNSRYWLGLAACCQMLKEYEEAIDAYALA------AALD--------   81 (135)
T ss_pred             HHHHHHcccHHHHHHHHHHH------HHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhcC--------
Confidence            34444555555555554222      111  2235666777777777777777777777665      2221        


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                              ..++.....+|..+...|++++|+..|.++
T Consensus        82 --------p~~~~~~~~la~~~~~~g~~~~A~~~~~~a  111 (135)
T TIGR02552        82 --------PDDPRPYFHAAECLLALGEPESALKALDLA  111 (135)
T ss_pred             --------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                    123455667888888889999888877543

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2114|consensus

Probab=97.19  E-value=0.039  Score=51.31  Aligned_cols=137  Identities=12%  Similarity=0.215  Sum_probs=96.6

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHc--------CCHHHHHHHHHHhcCHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAM--------GSYRESVGAYERAEDYD   78 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~--------g~~~~A~~~Y~ka~~~~   78 (198)
                      +.+..++.+.-+.||++.|+.-|++.=.+-.-..++.+.-++..+..+..++|.-        ....-=+.+|.|.+|.+
T Consensus       369 ~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s~Vi~kfLdaq~IknLt~YLe~L~~~gla~~dhttlLLncYiKlkd~~  448 (933)
T KOG2114|consen  369 EIHRKYGDYLYGKGDFDEATDQYIETIGFLEPSEVIKKFLDAQRIKNLTSYLEALHKKGLANSDHTTLLLNCYIKLKDVE  448 (933)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHcccCChHHHHHHhcCHHHHHHHHHHHHHHHHcccccchhHHHHHHHHHHhcchH
Confidence            4567888888889999999999998766666667777777888888888888743        23444577899998877


Q ss_pred             HHHHHHhhccC------CHHHHHHHHHhcCCHHHHHHHHHHH-----------HhcCCHHHHHHHHHHcCChHHHHHHHH
Q psy12373         79 NVVRVDLDHLN------DIRHAVDIVKAKKCTEGAKRIADYC-----------NKHGDFGAAIHFLILSKCYQDAFNLSQ  141 (198)
Q Consensus        79 ~av~l~~~~~~------~~~~a~~l~~~~~~~~~~~~~A~~~-----------~~~g~~~~Av~~y~~ag~~~~A~~la~  141 (198)
                      +.-..-. ...      +.+.|++|+++.+-.+.+..+|.-+           +..+++++|+.+..+ =-++++++...
T Consensus       449 kL~efI~-~~~~g~~~fd~e~al~Ilr~snyl~~a~~LA~k~~~he~vl~ille~~~ny~eAl~yi~s-lp~~e~l~~l~  526 (933)
T KOG2114|consen  449 KLTEFIS-KCDKGEWFFDVETALEILRKSNYLDEAELLATKFKKHEWVLDILLEDLHNYEEALRYISS-LPISELLRTLN  526 (933)
T ss_pred             HHHHHHh-cCCCcceeeeHHHHHHHHHHhChHHHHHHHHHHhccCHHHHHHHHHHhcCHHHHHHHHhc-CCHHHHHHHHH
Confidence            7544333 322      4777888888877666666666543           556777777765443 45677777776


Q ss_pred             Hcch
Q psy12373        142 QHKK  145 (198)
Q Consensus       142 ~~~~  145 (198)
                      +.|.
T Consensus       527 kyGk  530 (933)
T KOG2114|consen  527 KYGK  530 (933)
T ss_pred             HHHH
Confidence            6664

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=97.18  E-value=0.033  Score=52.27  Aligned_cols=115  Identities=11%  Similarity=0.046  Sum_probs=79.4

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc-----C---HH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE-----D---YD   78 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~-----~---~~   78 (198)
                      ++..+..++..-.|+.+.|+++|.+.      ..+  .......+..+|..+...|++++|+++|.++-     +   +.
T Consensus        16 ~~~~d~~~ia~~~g~~~~A~~~~~~~------~~~--~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~   87 (765)
T PRK10049         16 NQIADWLQIALWAGQDAEVITVYNRY------RVH--MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR   87 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH------Hhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            44556677778888888888766433      111  22345568889999999999999999999942     2   23


Q ss_pred             HHHHHHhhccCCHHHHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         79 NVVRVDLDHLNDIRHAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        79 ~av~l~~~~~~~~~~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                      ....++. ..|++++|..++++    .|+ +. ...+|..+...|++++|+..|.++-
T Consensus        88 ~la~~l~-~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al  143 (765)
T PRK10049         88 GLILTLA-DAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL  143 (765)
T ss_pred             HHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3345556 67999998877654    333 34 5567777888888888877776543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.18  E-value=0.0037  Score=41.67  Aligned_cols=60  Identities=17%  Similarity=0.193  Sum_probs=38.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ......+|..+-..|+|++|++++.+.               .++        ..++.....+|+-+.+.|++++|++.|
T Consensus        25 ~~~~~~la~~~~~~~~y~~A~~~~~~~---------------~~~--------~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen   25 SAYLYNLAQCYFQQGKYEEAIELLQKL---------------KLD--------PSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHCH---------------THH--------HCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHh---------------CCC--------CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            345555688777777777777776551               000        011233456688888889999998888


Q ss_pred             HHc
Q psy12373        128 ILS  130 (198)
Q Consensus       128 ~~a  130 (198)
                      .++
T Consensus        82 ~~~   84 (84)
T PF12895_consen   82 EKA   84 (84)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.16  E-value=0.0047  Score=46.59  Aligned_cols=83  Identities=17%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             HcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHH
Q psy12373         18 SAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI   97 (198)
Q Consensus        18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l   97 (198)
                      ..|+++.|..+|..+-.+        ...+...+..+|-.+...|+|.+|+.+|.++      +.+-.            
T Consensus        47 ~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A------~~L~~------------  100 (157)
T PRK15363         47 EVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRA------AQIKI------------  100 (157)
T ss_pred             HCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH------HhcCC------------
Confidence            447777777666443221        1236677778899999999999999999988      32222            


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         98 VKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        98 ~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                          .+|......|.-+...|+.+.|.+.|..+
T Consensus       101 ----ddp~~~~~ag~c~L~lG~~~~A~~aF~~A  129 (157)
T PRK15363        101 ----DAPQAPWAAAECYLACDNVCYAIKALKAV  129 (157)
T ss_pred             ----CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                24555667788888889999888776544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=97.15  E-value=0.013  Score=46.92  Aligned_cols=100  Identities=17%  Similarity=0.186  Sum_probs=75.5

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHhc----------CHHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHH
Q psy12373         46 KSATTFIQYAKAKEAMGSYRESVGAYERAE----------DYDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRI  110 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~----------~~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~  110 (198)
                      .+-+++..+|-++...|.+++|...|.+|-          .++++.=|.. +.|+.+.|....++.    | .+.....+
T Consensus       101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal-~~gq~~~A~~~l~raL~~dp~~~~~~l~~  179 (250)
T COG3063         101 NNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCAL-KAGQFDQAEEYLKRALELDPQFPPALLEL  179 (250)
T ss_pred             CccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHh-hcCCchhHHHHHHHHHHhCcCCChHHHHH
Confidence            367899999999999999999999998874          4678887888 889999998877642    2 24456678


Q ss_pred             HHHHHhcCCHHHHHHHHHHcCCh--------HHHHHHHHHcchh
Q psy12373        111 ADYCNKHGDFGAAIHFLILSKCY--------QDAFNLSQQHKKL  146 (198)
Q Consensus       111 A~~~~~~g~~~~Av~~y~~ag~~--------~~A~~la~~~~~~  146 (198)
                      |+...+.|++-.|..++.+-..-        --.++|++..|.-
T Consensus       180 a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~L~iriak~~gd~  223 (250)
T COG3063         180 ARLHYKAGDYAPARLYLERYQQRGGAQAESLLLGIRIAKRLGDR  223 (250)
T ss_pred             HHHHHhcccchHHHHHHHHHHhcccccHHHHHHHHHHHHHhccH
Confidence            88888889998888777664432        2236666666654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.15  E-value=0.011  Score=44.48  Aligned_cols=100  Identities=12%  Similarity=0.081  Sum_probs=73.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +-+.++.+|-.+...|++++|+++|.-.        +.+    +          +.++.-...+|-.+...|++.+||..
T Consensus        34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L--------~~~----D----------p~~~~y~~gLG~~~Q~~g~~~~AI~a   91 (157)
T PRK15363         34 PLNTLYRYAMQLMEVKEFAGAARLFQLL--------TIY----D----------AWSFDYWFRLGECCQAQKHWGEAIYA   91 (157)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHH--------HHh----C----------cccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4456778899999999999999998765        111    1          11233455688889999999999999


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhHHhcCChhhHHhhh
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCS  193 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A~~ag~~~~Al~l~  193 (198)
                      |.+|..                      |+ +.+|..+...|..+...|+.+.|.++  +..||..|
T Consensus        92 Y~~A~~----------------------L~-~ddp~~~~~ag~c~L~lG~~~~A~~a--F~~Ai~~~  133 (157)
T PRK15363         92 YGRAAQ----------------------IK-IDAPQAPWAAAECYLACDNVCYAIKA--LKAVVRIC  133 (157)
T ss_pred             HHHHHh----------------------cC-CCCchHHHHHHHHHHHcCCHHHHHHH--HHHHHHHh
Confidence            998876                      34 36788899999999999998888222  34445544

>KOG1126|consensus

Probab=97.13  E-value=0.0058  Score=55.03  Aligned_cols=169  Identities=11%  Similarity=0.062  Sum_probs=97.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHH-------------------------HHhhhhccC-ChHHHHHHHHHHHHcCCH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTK-------------------------IGQLLPHIK-SATTFIQYAKAKEAMGSY   64 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~-------------------------a~~l~~~~~-~~~l~~~~A~~~e~~g~~   64 (198)
                      +.++.|=.-++|++|.++|...++.+-                         +..|++.-. .|+...-+|+-|.-++++
T Consensus       358 q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh  437 (638)
T KOG1126|consen  358 QLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDH  437 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHH
Confidence            455566666888888888887766431                         122222222 677777789999999999


Q ss_pred             HHHHHHHHHhcCHHH----HHHHHh-h--ccCCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         65 RESVGAYERAEDYDN----VVRVDL-D--HLNDIRHAVDIVKAK-----KCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        65 ~~A~~~Y~ka~~~~~----av~l~~-~--~~~~~~~a~~l~~~~-----~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      +.|+++|.||-..+.    |-.++. |  ....+|+|+..-+..     +...+-+=++-.+.++++++.|.-+|.+|-.
T Consensus       438 ~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~  517 (638)
T KOG1126|consen  438 DTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE  517 (638)
T ss_pred             HHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhc
Confidence            999999999953322    222221 0  245667666554431     1223344466677788888888777777654


Q ss_pred             hH--HHHH------HHHHcchh----hHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        133 YQ--DAFN------LSQQHKKL----HEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       133 ~~--~A~~------la~~~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..  .-+-      +..+.+..    +.+.+++.+ +..+|--.+..|..+-..++|.+|
T Consensus       518 INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l-d~kn~l~~~~~~~il~~~~~~~ea  576 (638)
T KOG1126|consen  518 INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL-DPKNPLCKYHRASILFSLGRYVEA  576 (638)
T ss_pred             CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-CCCCchhHHHHHHHHHhhcchHHH
Confidence            21  1110      01111111    122333222 234555566777777777777777

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=97.11  E-value=0.041  Score=43.02  Aligned_cols=87  Identities=9%  Similarity=0.083  Sum_probs=63.1

Q ss_pred             cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHH-HHhhccCC--HHHHHHHHHh----cC-CHHHHH
Q psy12373         45 IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVR-VDLDHLND--IRHAVDIVKA----KK-CTEGAK  108 (198)
Q Consensus        45 ~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~-l~~~~~~~--~~~a~~l~~~----~~-~~~~~~  108 (198)
                      .++.+.+..+|+.+...|++++|+.+|.++-..        ..... ++. ..|+  .++|..+.++    .| ++....
T Consensus        70 P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~-~~g~~~~~~A~~~l~~al~~dP~~~~al~  148 (198)
T PRK10370         70 PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYY-QAGQHMTPQTREMIDKALALDANEVTALM  148 (198)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-hcCCCCcHHHHHHHHHHHHhCCCChhHHH
Confidence            348889999999999999999999999998743        11122 233 4465  3777766653    23 345566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373        109 RIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       109 ~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      .+|..+...|++++|+..|.++-.
T Consensus       149 ~LA~~~~~~g~~~~Ai~~~~~aL~  172 (198)
T PRK10370        149 LLASDAFMQADYAQAIELWQKVLD  172 (198)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHh
Confidence            788888899999999988877643

>KOG1585|consensus

Probab=97.09  E-value=0.0094  Score=48.15  Aligned_cols=129  Identities=14%  Similarity=0.127  Sum_probs=69.7

Q ss_pred             cccchHHHHHHHHHHcCCHHHHHH-------HHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373          4 GALTLDRGKWTLYESAGNYEKAAT-------CYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED   76 (198)
Q Consensus         4 ~~~~~~~~Aa~~y~~~g~~~~Ai~-------~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~   76 (198)
                      |+-++|+.|+.-|..+.++++|-.       .|...+.|..|..-.+...  .+...+-.+-|-..-++.|+.+|...|.
T Consensus        29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaa--mLake~~klsEvvdl~eKAs~lY~E~Gs  106 (308)
T KOG1585|consen   29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAA--MLAKELSKLSEVVDLYEKASELYVECGS  106 (308)
T ss_pred             hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HHHHHHHHhHHHHHHHHHHHHHHHHhCC
Confidence            344788899998888888876655       4555555555443333222  3344444555555566677777777776


Q ss_pred             HHHH-------HHHHhhccCCHHHHHHH-------HHhcCCHHH----HHHHHHHHHhcCCHHHHHHHHHHcCChHHH
Q psy12373         77 YDNV-------VRVDLDHLNDIRHAVDI-------VKAKKCTEG----AKRIADYCNKHGDFGAAIHFLILSKCYQDA  136 (198)
Q Consensus        77 ~~~a-------v~l~~~~~~~~~~a~~l-------~~~~~~~~~----~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A  136 (198)
                      ++-|       -++.-  .-++++|+.+       +.+......    .-.+++.+.+...+++|-.++.|-+.|-.-
T Consensus       107 pdtAAmaleKAak~le--nv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~  182 (308)
T KOG1585|consen  107 PDTAAMALEKAAKALE--NVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADK  182 (308)
T ss_pred             cchHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHH
Confidence            5333       22222  2344444433       322221111    123555666666676666666666665443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=97.09  E-value=0.0023  Score=40.34  Aligned_cols=53  Identities=23%  Similarity=0.369  Sum_probs=40.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-IKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +..|.+.|+++.|+++|...         +.. ..++..+..+|..+...|++++|+.+|.++
T Consensus         4 a~~~~~~g~~~~A~~~~~~~---------l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQA---------LKQDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHH---------HCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH---------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45666777788887777433         322 237789999999999999999999999987

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.09  E-value=0.011  Score=50.43  Aligned_cols=93  Identities=19%  Similarity=0.264  Sum_probs=66.2

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH   87 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~   87 (198)
                      +..+|..+|.. |+++.|+++|.++      .++  ..++..++..+|..+...|++++|+..+.++      +++.-  
T Consensus         5 l~~~a~~a~~~-~~~~~Ai~~~~~A------l~~--~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~A------l~l~P--   67 (356)
T PLN03088          5 LEDKAKEAFVD-DDFALAVDLYTQA------IDL--DPNNAELYADRAQANIKLGNFTEAVADANKA------IELDP--   67 (356)
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHH------HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCc--
Confidence            34556555544 8899999888544      332  3346788889999999999999999888776      44322  


Q ss_pred             cCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         88 LNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        88 ~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                                    ..+.....+|..+...|++++|+..|.++-
T Consensus        68 --------------~~~~a~~~lg~~~~~lg~~~eA~~~~~~al   97 (356)
T PLN03088         68 --------------SLAKAYLRKGTACMKLEEYQTAKAALEKGA   97 (356)
T ss_pred             --------------CCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence                          123445567888888899988888887654

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=97.08  E-value=0.0032  Score=40.09  Aligned_cols=62  Identities=21%  Similarity=0.295  Sum_probs=48.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHG-DFGAAIH  125 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g-~~~~Av~  125 (198)
                      ++..+...|..+...|++++|+.+|.++      |++.-                .++.....+|..+...| ++++|++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a------i~~~p----------------~~~~~~~~~g~~~~~~~~~~~~A~~   59 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKA------IELDP----------------NNAEAYYNLGLAYMKLGKDYEEAIE   59 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHH------HHHST----------------THHHHHHHHHHHHHHTTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHcCC----------------CCHHHHHHHHHHHHHhCccHHHHHH
Confidence            4567888999999999999999999998      65432                12334667888899998 7999998


Q ss_pred             HHHHc
Q psy12373        126 FLILS  130 (198)
Q Consensus       126 ~y~~a  130 (198)
                      .|.++
T Consensus        60 ~~~~a   64 (69)
T PF13414_consen   60 DFEKA   64 (69)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

...

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=97.05  E-value=0.0084  Score=44.40  Aligned_cols=88  Identities=14%  Similarity=0.051  Sum_probs=63.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      |..+...|..+...|++++|+.+|.++      +++--                .++.....+|..+...|++++|+.+|
T Consensus        24 p~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~P----------------~~~~a~~~lg~~~~~~g~~~~A~~~y   81 (144)
T PRK15359         24 PETVYASGYASWQEGDYSRAVIDFSWL------VMAQP----------------WSWRAHIALAGTWMMLKEYTTAINFY   81 (144)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHcCC----------------CcHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            444566788888889999988888875      32211                23444557888888889999888888


Q ss_pred             HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++-.                      + .+..+..+..++..+...|++.+|
T Consensus        82 ~~Al~----------------------l-~p~~~~a~~~lg~~l~~~g~~~eA  111 (144)
T PRK15359         82 GHALM----------------------L-DASHPEPVYQTGVCLKMMGEPGLA  111 (144)
T ss_pred             HHHHh----------------------c-CCCCcHHHHHHHHHHHHcCCHHHH
Confidence            76533                      2 245778888888888888888887

>KOG1155|consensus

Probab=96.97  E-value=0.011  Score=51.63  Aligned_cols=114  Identities=18%  Similarity=0.091  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh---cCCH--HHHHHHHHHHHh
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA---KKCT--EGAKRIADYCNK  116 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~---~~~~--~~~~~~A~~~~~  116 (198)
                      ..+-+|+.++.++...-|.-+|.+|-.        |...=++|- .+++.++|++.=+.   .++.  .....+|+.+++
T Consensus       400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~-kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~  478 (559)
T KOG1155|consen  400 AWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYE-KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEE  478 (559)
T ss_pred             HHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHH-HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence            333446667777776666666666642        122233343 56666666554331   2222  233456666666


Q ss_pred             cCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        117 HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       117 ~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .+|..+|..+|.+.=..      .          ++-....+.+.+...-+|.||.+.++|++|
T Consensus       479 l~d~~eAa~~yek~v~~------~----------~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A  526 (559)
T KOG1155|consen  479 LKDLNEAAQYYEKYVEV------S----------ELEGEIDDETIKARLFLAEYFKKMKDFDEA  526 (559)
T ss_pred             HHhHHHHHHHHHHHHHH------H----------HhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence            66666666665543211      0          000011223445666799999999999999

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=96.96  E-value=0.0023  Score=42.65  Aligned_cols=69  Identities=25%  Similarity=0.354  Sum_probs=50.9

Q ss_pred             cchHHHHHHHHHHc----C-CHHH-----HHHHHHHccCHHHHHhhhhccC----ChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESA----G-NYEK-----AATCYIQLKNWTKIGQLLPHIK----SATTFIQYAKAKEAMGSYRESVGAY   71 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~----g-~~~~-----Ai~~y~~~~~~~~a~~l~~~~~----~~~l~~~~A~~~e~~g~~~~A~~~Y   71 (198)
                      .+.|++|..+|++.    . +++.     ...+|.+.|+|.+|..++++..    +......+|+-+...|++++|+++|
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l   81 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKAL   81 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            35788888888765    1 2122     2678889999999999886532    4466777899999999999999999


Q ss_pred             HHh
Q psy12373         72 ERA   74 (198)
Q Consensus        72 ~ka   74 (198)
                      .++
T Consensus        82 ~~~   84 (84)
T PF12895_consen   82 EKA   84 (84)
T ss_dssp             HHH
T ss_pred             hcC
Confidence            875

>KOG0547|consensus

Probab=96.96  E-value=0.026  Score=49.70  Aligned_cols=171  Identities=13%  Similarity=0.124  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHcCC-HHHHHHHHHHccCHH-------HHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--H
Q psy12373          8 LDRGKWTLYESAGN-YEKAATCYIQLKNWT-------KIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--Y   77 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~-~~~Ai~~y~~~~~~~-------~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~   77 (198)
                      .++.+.++...-.. |-+-..+|.+..+-.       +|.+|  ...+++++++-|+..--.+++++|+.=|.++-.  +
T Consensus       348 d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l--dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~p  425 (606)
T KOG0547|consen  348 DFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL--DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDP  425 (606)
T ss_pred             hHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc--CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcCh
Confidence            45555555555554 444445555554433       23333  234889999999999999999999999999874  3


Q ss_pred             HHH---HHHHhh--ccCCHHHHHHHHH----hcCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCC---------------
Q psy12373         78 DNV---VRVDLD--HLNDIRHAVDIVK----AKKC-TEGAKRIADYCNKHGDFGAAIHFLILSKC---------------  132 (198)
Q Consensus        78 ~~a---v~l~~~--~~~~~~~a~~l~~----~~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~---------------  132 (198)
                      .++   |++|+-  +.+.+++.++.-.    +.|+ +++--..|+.+..+++|++|++.|-+|-.               
T Consensus       426 e~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~pl  505 (606)
T KOG0547|consen  426 ENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPL  505 (606)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhh
Confidence            332   444441  2357777665443    3444 55555789999999999999999877654               


Q ss_pred             hHHHHHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        133 YQDAFNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       133 ~~~A~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++|+-+.+=.+.+.....+++  +. ++.....+.-+|+.-.+.|+.++|
T Consensus       506 V~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eA  556 (606)
T KOG0547|consen  506 VHKALLVLQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEA  556 (606)
T ss_pred             hhhhHhhhchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHH
Confidence            2344444432233332233321  12 223345667777877777777777

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.92  E-value=0.0027  Score=41.56  Aligned_cols=64  Identities=22%  Similarity=0.339  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373          9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-IKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +..=+..|...|++++|+.+|.++-+..+  .+-+. .....++..+|..+...|++++|+++|.++
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKALDIEE--QLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHH--HTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            44556788899999999999987744411  11111 112456778899999999999999999998

...

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=96.85  E-value=0.018  Score=39.96  Aligned_cols=83  Identities=13%  Similarity=0.114  Sum_probs=43.2

Q ss_pred             HHHHHccCHHHHHhhhhcc----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHH
Q psy12373         27 TCYIQLKNWTKIGQLLPHI----K----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIV   98 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~~----~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~   98 (198)
                      ..+...+++++|...+..+    +    .+.....+|..+...|++++|+++|.++      +...- .           
T Consensus        10 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~------~~~~p-~-----------   71 (119)
T TIGR02795        10 LLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAV------VKKYP-K-----------   71 (119)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHH------HHHCC-C-----------
Confidence            3455556666555444321    1    1234555566666666666666555554      22111 0           


Q ss_pred             HhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         99 KAKK-CTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus        99 ~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                        ++ .+.....+|..+...|++++|+.+|.+
T Consensus        72 --~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  101 (119)
T TIGR02795        72 --SPKAPDALLKLGMSLQELGDKEKAKATLQQ  101 (119)
T ss_pred             --CCcccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence              01 123445667777777777777777644

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.76  E-value=0.085  Score=42.26  Aligned_cols=145  Identities=11%  Similarity=0.056  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc---c--CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH---I--KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR   82 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~---~--~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~   82 (198)
                      ...+|++...+-|-      -|...|++..|..-+++   +  +....+.-.|.++...|+.+.|-+.|.+|      +.
T Consensus        30 ~~~~aa~arlqLal------~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkA------ls   97 (250)
T COG3063          30 DRNEAAKARLQLAL------GYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKA------LS   97 (250)
T ss_pred             cHHHHHHHHHHHHH------HHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHH------Hh
Confidence            34556655555443      56677777777666653   2  24455666789999999999999999998      55


Q ss_pred             HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC----------hHHHHHHHHHcchhhHHhhh
Q psy12373         83 VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC----------YQDAFNLSQQHKKLHEFGKF  152 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~----------~~~A~~la~~~~~~~~~~~~  152 (198)
                      +.- ..|               ++.-.++-|+...|.+++|...|.+|=.          |+.+.=-+.+.|+++...+.
T Consensus        98 l~p-~~G---------------dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~  161 (250)
T COG3063          98 LAP-NNG---------------DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEY  161 (250)
T ss_pred             cCC-Ccc---------------chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHH
Confidence            443 222               2233455666666666666665555422          22222222333333322222


Q ss_pred             h--hhc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        153 L--LEE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       153 ~--~l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +  +|. ....|.....+|+-..+.|+|-.|
T Consensus       162 l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A  192 (250)
T COG3063         162 LKRALELDPQFPPALLELARLHYKAGDYAPA  192 (250)
T ss_pred             HHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence            1  122 233455666777777777777777

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=96.74  E-value=0.015  Score=44.84  Aligned_cols=85  Identities=24%  Similarity=0.247  Sum_probs=62.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCHHHHHHHHHhc-------CCHHHH-
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDIRHAVDIVKAK-------KCTEGA-  107 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~~~a~~l~~~~-------~~~~~~-  107 (198)
                      .+..+..+|.++.+.|+++.|.++|.++-++           ...||+++ ..++|..+...+.+.       .+.+.. 
T Consensus        35 ir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i-~~~d~~~v~~~i~ka~~~~~~~~d~~~~n  113 (177)
T PF10602_consen   35 IRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAI-FFGDWSHVEKYIEKAESLIEKGGDWERRN  113 (177)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHhccchHHHHH
Confidence            4567889999999999999999999999876           67788888 789999877665432       111111 


Q ss_pred             ---HHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373        108 ---KRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       108 ---~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                         ..-|-++...++|..|.++|..+-.
T Consensus       114 rlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  114 RLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence               1224455677888888888777654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=96.72  E-value=0.095  Score=46.00  Aligned_cols=66  Identities=15%  Similarity=0.044  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-----
Q psy12373        106 GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS-----  180 (198)
Q Consensus       106 ~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A-----  180 (198)
                      .-..+|+.|.+.|++.             +|+++....-          -..+.+|..+..+|+.|+..|+-.+|     
T Consensus       376 l~~~~a~all~~g~~~-------------eai~~L~~~~----------~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A  432 (484)
T COG4783         376 LQLNLAQALLKGGKPQ-------------EAIRILNRYL----------FNDPEDPNGWDLLAQAYAELGNRAEALLARA  432 (484)
T ss_pred             HHHHHHHHHHhcCChH-------------HHHHHHHHHh----------hcCCCCchHHHHHHHHHHHhCchHHHHHHHH
Confidence            3446677666666655             4444443221          13567899999999999999998887     


Q ss_pred             ---HhcCChhhHHhhhh
Q psy12373        181 ---FRVSQQSRAMPCSS  194 (198)
Q Consensus       181 ---~~ag~~~~Al~l~~  194 (198)
                         ..+|++..|+..+.
T Consensus       433 E~~~~~G~~~~A~~~l~  449 (484)
T COG4783         433 EGYALAGRLEQAIIFLM  449 (484)
T ss_pred             HHHHhCCCHHHHHHHHH
Confidence               88999999987764

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.70  E-value=0.00028  Score=51.93  Aligned_cols=94  Identities=13%  Similarity=0.220  Sum_probs=66.9

Q ss_pred             HHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCC
Q psy12373         80 VVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEP  159 (198)
Q Consensus        80 av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~  159 (198)
                      .+.+++ ..+..+++.++.+.+... ....+++.+.+.|.+++|+-+|.+.|++.+|++++...+.++...+.  .....
T Consensus        48 L~~ly~-~~~~~~~l~~~L~~~~~y-d~~~~~~~c~~~~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~--~~~~~  123 (143)
T PF00637_consen   48 LLELYI-KYDPYEKLLEFLKTSNNY-DLDKALRLCEKHGLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEY--AKKVD  123 (143)
T ss_dssp             HHHHHH-CTTTCCHHHHTTTSSSSS--CTHHHHHHHTTTSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTT--GGGCS
T ss_pred             HHHHHH-hcCCchHHHHHccccccc-CHHHHHHHHHhcchHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHH--HHhcC
Confidence            366666 444446666666654441 23357888899999999999999999999999985555555433333  35567


Q ss_pred             CHHHHHHHHHHHHhCCCh
Q psy12373        160 NPVELKRLAIHFEEDKGV  177 (198)
Q Consensus       160 ~~~~~~~~A~~~e~~g~~  177 (198)
                      +|++...+..++.+.+.+
T Consensus       124 ~~~l~~~l~~~~l~~~~~  141 (143)
T PF00637_consen  124 DPELWEQLLKYCLDSKPF  141 (143)
T ss_dssp             SSHHHHHHHHHHCTSTCT
T ss_pred             cHHHHHHHHHHHHhcCcc
Confidence            799999999999887754

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG1155|consensus

Probab=96.70  E-value=0.019  Score=50.16  Aligned_cols=99  Identities=22%  Similarity=0.281  Sum_probs=61.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      -=++.|++-++.+.||.||.++=....        .....+..+|+.+|..++..+|..+|++.      |...- --|.
T Consensus       437 aLG~CY~kl~~~~eAiKCykrai~~~d--------te~~~l~~LakLye~l~d~~eAa~~yek~------v~~~~-~eg~  501 (559)
T KOG1155|consen  437 ALGECYEKLNRLEEAIKCYKRAILLGD--------TEGSALVRLAKLYEELKDLNEAAQYYEKY------VEVSE-LEGE  501 (559)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhccc--------cchHHHHHHHHHHHHHHhHHHHHHHHHHH------HHHHH-hhcc
Confidence            345667777777777777754311111        13467778888888888888888888887      55442 1122


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      .++=        ...+...+|+||-+.+++++|-.+-.+.-.
T Consensus       502 ~~~~--------t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  502 IDDE--------TIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             cchH--------HHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            1110        112344689999999999888776555544

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.67  E-value=0.031  Score=50.17  Aligned_cols=72  Identities=17%  Similarity=0.242  Sum_probs=55.2

Q ss_pred             HHHHccCHHHHHhhhh----ccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHH
Q psy12373         28 CYIQLKNWTKIGQLLP----HIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHA   94 (198)
Q Consensus        28 ~y~~~~~~~~a~~l~~----~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a   94 (198)
                      +|-..|++++|...++    +.+ .++++..-|+.+...|++.+|.+....|...        .+++.-++ +.|+.++|
T Consensus       203 hyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L-Ra~~~e~A  281 (517)
T PF12569_consen  203 HYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL-RAGRIEEA  281 (517)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH-HCCCHHHH
Confidence            3444455555544443    233 5788888999999999999999999999854        56777788 88999999


Q ss_pred             HHHHHh
Q psy12373         95 VDIVKA  100 (198)
Q Consensus        95 ~~l~~~  100 (198)
                      ..++..
T Consensus       282 ~~~~~~  287 (517)
T PF12569_consen  282 EKTASL  287 (517)
T ss_pred             HHHHHh
Confidence            999874

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.65  E-value=0.14  Score=38.76  Aligned_cols=56  Identities=14%  Similarity=0.156  Sum_probs=35.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +.+|...|++++|+.+|.++-      .+..... ....+..+|..+...|++++|+.+|.++
T Consensus        42 g~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a   98 (172)
T PRK02603         42 GMSAQADGEYAEALENYEEAL------KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQA   98 (172)
T ss_pred             HHHHHHcCCHHHHHHHHHHHH------HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345566677777777765431      1111111 2356777888888888888888888776

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.62  E-value=0.038  Score=39.86  Aligned_cols=79  Identities=16%  Similarity=0.165  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH----HH-------HHHHHhhccCCHHHHHHHHHh----cCC---H-HHHHH
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY----DN-------VVRVDLDHLNDIRHAVDIVKA----KKC---T-EGAKR  109 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~----~~-------av~l~~~~~~~~~~a~~l~~~----~~~---~-~~~~~  109 (198)
                      .+++++|..+...|+.++|+.+|.++-..    ..       .-..+. .+|+.++|..+.++    +|+   . .....
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr-~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLR-NLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            56788999999999999999999988532    11       122233 68888888877653    233   1 12223


Q ss_pred             HHHHHHhcCCHHHHHHHHH
Q psy12373        110 IADYCNKHGDFGAAIHFLI  128 (198)
Q Consensus       110 ~A~~~~~~g~~~~Av~~y~  128 (198)
                      +|-.+...|+.++|+..+.
T Consensus        81 ~Al~L~~~gr~~eAl~~~l   99 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLL   99 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHH
Confidence            4445555555555555443

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=96.60  E-value=0.069  Score=48.99  Aligned_cols=140  Identities=14%  Similarity=0.169  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHH----------HHHHHHhhccCCHHHHHH-----------HHHh------c
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYD----------NVVRVDLDHLNDIRHAVD-----------IVKA------K  101 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~----------~av~l~~~~~~~~~~a~~-----------l~~~------~  101 (198)
                      .++..+.+.|+ ..+..+|.++|.-..+..          ..-++.+ ..++|+..+-           +..+      .
T Consensus       329 rLI~~Y~~~F~-~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvl-etref~~LLG~i~~dG~r~~G~i~~~~~Li~~  406 (613)
T PF04097_consen  329 RLIGQYTRSFE-ITDPREALQYLYLICLFKDPEQRNLFHECLRELVL-ETREFDLLLGDINPDGSRTPGLIERRLSLIKF  406 (613)
T ss_dssp             HHHHHHHHTTT-TT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHH-HH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-
T ss_pred             HHHHHHHHHHh-ccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHH-ccCCHHHHCCCCCCCCccccceeeccccccCC
Confidence            45556677664 668999999998877642          2233333 3344544331           1111      1


Q ss_pred             C-C----HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhh--c-------CCCCHHHHHHH
Q psy12373        102 K-C----TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE--E-------DEPNPVELKRL  167 (198)
Q Consensus       102 ~-~----~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l--~-------~~~~~~~~~~~  167 (198)
                      . .    ......+|.-++..|.++.||.+|..||+|+.++++....     +.+++..  .       .......-..+
T Consensus       407 ~~~~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~~-----Ls~~l~~~~~~~~~~s~~~~l~~la~~i  481 (613)
T PF04097_consen  407 DDDEDFLREIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNRL-----LSQVLSQPSSSSLSDSERERLIELAKEI  481 (613)
T ss_dssp             SSSSHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHHH-----HHHHHHCSSTSSSSSTTTTSHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHHH-----HHHHHcCccccccccchhhhHHHHHHHH
Confidence            1 1    1234568999999999999999999999999999998543     2333211  1       01123344445


Q ss_pred             HHHHHhCCCh-----hhH----------------HhcCChhhHHhhhhh
Q psy12373        168 AIHFEEDKGV-----LTS----------------FRVSQQSRAMPCSSG  195 (198)
Q Consensus       168 A~~~e~~g~~-----~~A----------------~~ag~~~~Al~l~~~  195 (198)
                      ...|...+..     .+.                ..+|+|.+|++...+
T Consensus       482 ~~~y~~~~~~~~~~~~~~~~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~  530 (613)
T PF04097_consen  482 LERYKSNPHISSKVSRKNRETFQLLLDLAEFFDLYHAGQYEQALDIIEK  530 (613)
T ss_dssp             HHHHTTSHHHHTTS-HHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHhCcchHhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            5555554432     111                788999999887654

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>KOG2376|consensus

Probab=96.60  E-value=0.12  Score=46.40  Aligned_cols=163  Identities=17%  Similarity=0.182  Sum_probs=94.5

Q ss_pred             cchHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHh-
Q psy12373          6 LTLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERA-   74 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka-   74 (198)
                      +.+|++|.++-+..+-        +++|- |..+++..+.+...+...+  ++.++.-.|+.+...|+|++|.+.|... 
T Consensus        59 ~~ky~~ALk~ikk~~~~~~~~~~~fEKAY-c~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~  137 (652)
T KOG2376|consen   59 LDKYEDALKLIKKNGALLVINSFFFEKAY-CEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLA  137 (652)
T ss_pred             hhHHHHHHHHHHhcchhhhcchhhHHHHH-HHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4678888866665542        23332 4447778888777776544  5667878899999999999999999887 


Q ss_pred             ----cCHHHHHHHHhh-----ccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373         75 ----EDYDNVVRVDLD-----HLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK  145 (198)
Q Consensus        75 ----~~~~~av~l~~~-----~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~  145 (198)
                          .|++.-++.-+-     ..++|-+.+.++. ..+.+..+..|=.+...|+|.+|++++.+|      .++|.+.-.
T Consensus       138 kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~syel~yN~Ac~~i~~gky~qA~elL~kA------~~~~~e~l~  210 (652)
T KOG2376|consen  138 KNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSYELLYNTACILIENGKYNQAIELLEKA------LRICREKLE  210 (652)
T ss_pred             hcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchHHHHHHHHHHHHhcccHHHHHHHHHHH------HHHHHHhhc
Confidence                234433333320     0011222211111 123455566777788899999999988765      445543311


Q ss_pred             hhHH--hhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        146 LHEF--GKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       146 ~~~~--~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .+..  .++    .........++|=.+.-.|+..+|
T Consensus       211 ~~d~~eEei----e~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  211 DEDTNEEEI----EEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             ccccchhhH----HHHHHHHHHHHHHHHHHhcchHHH
Confidence            0000  000    011123455666677777777777

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.54  E-value=0.077  Score=38.26  Aligned_cols=102  Identities=22%  Similarity=0.254  Sum_probs=66.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC------HHHHHH--
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED------YDNVVR--   82 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~------~~~av~--   82 (198)
                      +.+-.|-..|++++||..|.++-.-     -+...........+|..+...|++++|+.++.++-.      +..+++  
T Consensus         6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    6 ELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            3567788889999999999766210     011111245677899999999999999999987742      133444  


Q ss_pred             --HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373         83 --VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLI  128 (198)
Q Consensus        83 --l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~  128 (198)
                        +.+-..|++++|+..+...        ++....   .|.+||.+|-
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~--------la~~~~---~y~ra~~~ya  117 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEA--------LAETLP---RYRRAIRFYA  117 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHH--------HHHHHH---HHHHHHHHHH
Confidence              2333668888877664431        222222   6778888775

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=96.53  E-value=0.06  Score=50.00  Aligned_cols=120  Identities=13%  Similarity=-0.024  Sum_probs=78.8

Q ss_pred             HccCHHHHHhhhhcc--CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHH
Q psy12373         31 QLKNWTKIGQLLPHI--KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAK  108 (198)
Q Consensus        31 ~~~~~~~a~~l~~~~--~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~  108 (198)
                      +-.-++.+..+.+.-  -.+..+..+|.++.+.+.+.+|..+|+--|.+..|+..+. ..+.|.++..|+.+....+ +.
T Consensus       903 ~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~-sA~mwrec~si~~q~~~~e-~~  980 (1243)
T COG5290         903 RHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYD-SALMWRECGSISTQEKGYE-FN  980 (1243)
T ss_pred             hccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhhHHhhhcchH-HH
Confidence            334444444443321  1344566678888888888888888888888888888887 7788888887776543322 11


Q ss_pred             HHHHH-------------------HHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhh
Q psy12373        109 RIADY-------------------CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKF  152 (198)
Q Consensus       109 ~~A~~-------------------~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~  152 (198)
                      .+|.-                   +.-.....+|+-+++++-++++|+.+|...+..+...+.
T Consensus       981 ~~AE~L~S~l~ve~R~~~da~~i~l~yl~N~~eava~~ckgs~y~ea~~~a~~s~~~e~~k~~ 1043 (1243)
T COG5290         981 LCAELLPSDLLVEFRKAGDAEKILLTYLENLYEAVAMDCKGSEYREAFCEAMVSRLVESEKHY 1043 (1243)
T ss_pred             HHHHhhhhhHHHHHHHhcCHHHHHHHHHhCHHHHHHHHcccccchHHHHHHHHhhhhhHHHHh
Confidence            22221                   112345578999999999999999999877765444443

>KOG1126|consensus

Probab=96.52  E-value=0.033  Score=50.32  Aligned_cols=136  Identities=8%  Similarity=0.025  Sum_probs=73.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHH----HHhhhh--------------------ccC--ChHHHHHHHHHHHHcCCH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTK----IGQLLP--------------------HIK--SATTFIQYAKAKEAMGSY   64 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~----a~~l~~--------------------~~~--~~~l~~~~A~~~e~~g~~   64 (198)
                      -++..|.-.++.+.||+||.++-+.+.    +-.|+-                    .++  .-..++-+|-.+-+++.+
T Consensus       426 a~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~Kqek~  505 (638)
T KOG1126|consen  426 ALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLKQEKL  505 (638)
T ss_pred             HhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheeccchh
Confidence            356778888888888888888766443    222221                    111  112333345666666777


Q ss_pred             HHHHHHHHHhcCH--HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc------------
Q psy12373         65 RESVGAYERAEDY--DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS------------  130 (198)
Q Consensus        65 ~~A~~~Y~ka~~~--~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a------------  130 (198)
                      +.|.-+|.+|=++  .+.                        .....++..+...|+.++|+++|-+|            
T Consensus       506 e~Ae~~fqkA~~INP~ns------------------------vi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~  561 (638)
T KOG1126|consen  506 EFAEFHFQKAVEINPSNS------------------------VILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKY  561 (638)
T ss_pred             hHHHHHHHhhhcCCccch------------------------hHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHH
Confidence            7777776666432  111                        12223444444444444444444443            


Q ss_pred             ---------CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        131 ---------KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 ---------g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                               +++++|+...++-      .++   .+ ....++.-+++.|..-|+...|
T Consensus       562 ~~~~il~~~~~~~eal~~LEeL------k~~---vP-~es~v~~llgki~k~~~~~~~A  610 (638)
T KOG1126|consen  562 HRASILFSLGRYVEALQELEEL------KEL---VP-QESSVFALLGKIYKRLGNTDLA  610 (638)
T ss_pred             HHHHHHHhhcchHHHHHHHHHH------HHh---Cc-chHHHHHHHHHHHHHHccchHH
Confidence                     3344444444222      221   22 3456777788888888888777

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=96.51  E-value=0.029  Score=35.80  Aligned_cols=88  Identities=23%  Similarity=0.339  Sum_probs=54.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR   92 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~   92 (198)
                      +..|...|++++|+..+.+.      .++  ...++..+..+|..+...|+++.|+++|.++      +++.- .     
T Consensus         7 a~~~~~~~~~~~A~~~~~~~------~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~------~~~~~-~-----   66 (100)
T cd00189           7 GNLYYKLGDYDEALEYYEKA------LEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKA------LELDP-D-----   66 (100)
T ss_pred             HHHHHHHhcHHHHHHHHHHH------Hhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHH------HhCCC-c-----
Confidence            44455567777776665433      111  1123466777888888888888888887776      33322 1     


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                ++.....++..+...|+++.|...+.++
T Consensus        67 ----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~   94 (100)
T cd00189          67 ----------NAKAYYNLGLAYYKLGKYEEALEAYEKA   94 (100)
T ss_pred             ----------chhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                      1133445677777778888887776654

>KOG1524|consensus

Probab=96.47  E-value=0.041  Score=48.89  Aligned_cols=115  Identities=18%  Similarity=0.180  Sum_probs=82.0

Q ss_pred             HHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHH--HHHHhhccCCHHHHHHHHHhcCCHHH
Q psy12373         29 YIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNV--VRVDLDHLNDIRHAVDIVKAKKCTEG  106 (198)
Q Consensus        29 y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~a--v~l~~~~~~~~~~a~~l~~~~~~~~~  106 (198)
                      |.-...|+++.||++.+....+.-.+|-......+..-+...|..+++.++.  |+-..   +-.++..+.+...--...
T Consensus       583 ~~sssKWeqavRLCrfv~eqTMWAtlAa~Av~~~~m~~~EiAYaA~~~idKVsyin~iK---~ltske~~mA~~~l~~G~  659 (737)
T KOG1524|consen  583 YLSSSKWEQAVRLCRFVQEQTMWATLAAVAVRKHQMQISEIAYAAALQIDKVSYINHIK---ALTSKEEQMAENSLMLGR  659 (737)
T ss_pred             HhccchHHHHHHHHHhccchHHHHHHHHHHHhhccccHHHHHHHHhhchhhHHHHHHHh---ccCcHHHHHHHHHHHhcc
Confidence            4566889999999999988888888899899999999999999999988765  33222   222333333332100000


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchh
Q psy12373        107 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKL  146 (198)
Q Consensus       107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~  146 (198)
                      +...--.++..|-..+|+.+-++.-+|..|++|+.+++..
T Consensus       660 ~~eAe~iLl~~gl~~qav~lni~m~nW~RALEl~~K~K~~  699 (737)
T KOG1524|consen  660 MLEAETILLHGGLIEQAVGLNIRMHNWRRALELSQKHKEL  699 (737)
T ss_pred             chhhhHHHHhcchHHHhhhhhhhhhhHHHHHHHHHhHHHH
Confidence            1111113567788899999999999999999999998743

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=96.45  E-value=0.1  Score=39.50  Aligned_cols=64  Identities=16%  Similarity=0.235  Sum_probs=44.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      ....+..+|..+...|++++|+.+|.++      +.+.. .  .++          .......+|..+...|++++|+.+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~-~--~~~----------~~~~~~~la~~~~~~g~~~~A~~~   94 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEA------LKLEE-D--PND----------RSYILYNMGIIYASNGEHDKALEY   94 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHhh-c--cch----------HHHHHHHHHHHHHHcCCHHHHHHH
Confidence            4456778899999999999999999987      54433 1  111          112344677777888888888777


Q ss_pred             HHH
Q psy12373        127 LIL  129 (198)
Q Consensus       127 y~~  129 (198)
                      |.+
T Consensus        95 ~~~   97 (172)
T PRK02603         95 YHQ   97 (172)
T ss_pred             HHH
Confidence            654

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=96.45  E-value=0.051  Score=38.98  Aligned_cols=89  Identities=15%  Similarity=0.094  Sum_probs=58.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +......+|..+...|++++|.++|.++      +.+.-                .++.....+|..+...|++++|+..
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~~p----------------~~~~~~~~la~~~~~~~~~~~A~~~   73 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLL------AAYDP----------------YNSRYWLGLAACCQMLKEYEEAIDA   73 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHH------HHhCC----------------CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4566778888888999999999888664      22211                1233444566666666666666655


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++-.                      + .+.+++.+..+|..+...|++.+|
T Consensus        74 ~~~~~~----------------------~-~p~~~~~~~~la~~~~~~g~~~~A  104 (135)
T TIGR02552        74 YALAAA----------------------L-DPDDPRPYFHAAECLLALGEPESA  104 (135)
T ss_pred             HHHHHh----------------------c-CCCChHHHHHHHHHHHHcCCHHHH
Confidence            543321                      1 244678888888888888888888

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.42  E-value=0.007  Score=38.45  Aligned_cols=57  Identities=23%  Similarity=0.398  Sum_probs=44.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC-CHHHHHHHHHHh
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG-SYRESVGAYERA   74 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g-~~~~A~~~Y~ka   74 (198)
                      ..-+..|...|++++|+..|.++      .++  ..+++.++..+|..+...| ++++|++.|.++
T Consensus         7 ~~~g~~~~~~~~~~~A~~~~~~a------i~~--~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    7 YNLGQIYFQQGDYEEAIEYFEKA------IEL--DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHH------HHH--STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH------HHc--CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            34566677778888888888655      332  2346789999999999999 799999999987

...

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=96.42  E-value=0.1  Score=39.26  Aligned_cols=55  Identities=16%  Similarity=0.181  Sum_probs=33.8

Q ss_pred             HHHHHcCCHHHHHHHHHHccCHHHHHhhhhcc-CChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHI-KSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~-~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ..+...|+++.|+..|.++-      .+.... ....++..+|..+...|++++|+++|.++
T Consensus        43 ~~~~~~g~~~~A~~~~~~al------~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~A   98 (168)
T CHL00033         43 MSAQSEGEYAEALQNYYEAM------RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQA   98 (168)
T ss_pred             HHHHHcCCHHHHHHHHHHHH------hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34445566666666554431      111111 12346778888899999999999888777

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.31  E-value=0.016  Score=36.30  Aligned_cols=55  Identities=22%  Similarity=0.351  Sum_probs=36.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .+|..+...|++++|+++|.++      +                 +..| ++.....+|..+...|++++|+.+|.++
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~------l-----------------~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQA------L-----------------KQDPDNPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHH------H-----------------CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             hHHHHHHHcCCHHHHHHHHHHH------H-----------------HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3566666666666666666665      1                 1123 2445667899999999999999888765

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=96.30  E-value=0.064  Score=49.82  Aligned_cols=84  Identities=13%  Similarity=0.041  Sum_probs=53.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--H-----HHHHHHHhhccCCHHHHHHHHH----hcCC-HHHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAED--Y-----DNVVRVDLDHLNDIRHAVDIVK----AKKC-TEGAKRIADYC  114 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~-----~~av~l~~~~~~~~~~a~~l~~----~~~~-~~~~~~~A~~~  114 (198)
                      .......+|..+...+.+++|...+.++=+  +     ....-+++..+|+.++|..+-+    .+++ +.....+|..+
T Consensus       119 ~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l  198 (694)
T PRK15179        119 SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSL  198 (694)
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHH
Confidence            445555666666666666666666666542  1     1222222235666666654332    3443 45566889999


Q ss_pred             HhcCCHHHHHHHHHHc
Q psy12373        115 NKHGDFGAAIHFLILS  130 (198)
Q Consensus       115 ~~~g~~~~Av~~y~~a  130 (198)
                      .+.|+.++|+..|.++
T Consensus       199 ~~~G~~~~A~~~~~~a  214 (694)
T PRK15179        199 TRRGALWRARDVLQAG  214 (694)
T ss_pred             HHcCCHHHHHHHHHHH
Confidence            9999999999999998

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=96.30  E-value=0.068  Score=47.99  Aligned_cols=120  Identities=13%  Similarity=0.163  Sum_probs=70.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCH
Q psy12373         52 IQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA---KKCTEGAKRIADYCNKHGDF  120 (198)
Q Consensus        52 ~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~---~~~~~~~~~~A~~~~~~g~~  120 (198)
                      +-+|+++...|++++|.++..+|=+.        --=.+++. +.|++++|.+.+..   ....+....           
T Consensus       198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilK-h~G~~~~Aa~~~~~Ar~LD~~DRyiN-----------  265 (517)
T PF12569_consen  198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILK-HAGDLKEAAEAMDEARELDLADRYIN-----------  265 (517)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhCChhhHHHH-----------
Confidence            44699999999999999988877532        12234555 78888887765543   222222221           


Q ss_pred             HHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-HhcCChhhHHhhhh
Q psy12373        121 GAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS-FRVSQQSRAMPCSS  194 (198)
Q Consensus       121 ~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A-~~ag~~~~Al~l~~  194 (198)
                      .++++++.++|+.++|..++...-..         +.+....+.-+...||+-+-  .+| .+.|++..|++.+.
T Consensus       266 sK~aKy~LRa~~~e~A~~~~~~Ftr~---------~~~~~~~L~~mQc~Wf~~e~--a~a~~r~~~~~~ALk~~~  329 (517)
T PF12569_consen  266 SKCAKYLLRAGRIEEAEKTASLFTRE---------DVDPLSNLNDMQCMWFETEC--AEAYLRQGDYGLALKRFH  329 (517)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhhcCC---------CCCcccCHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHH
Confidence            35677777777777777776433211         11223344444555654322  344 66677777766553

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547|consensus

Probab=96.30  E-value=0.046  Score=48.17  Aligned_cols=85  Identities=18%  Similarity=0.266  Sum_probs=63.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---------------HHHHHHhhccCCHHHHHHHHHhc----CCHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYD---------------NVVRVDLDHLNDIRHAVDIVKAK----KCTEGA  107 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---------------~av~l~~~~~~~~~~a~~l~~~~----~~~~~~  107 (198)
                      .++.+.-.|+.+-++++|+.|++.|-+|-+.+               +|+-+.. -.++++.|.+++++.    |..+.+
T Consensus       461 ~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A  539 (606)
T KOG0547|consen  461 CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQA  539 (606)
T ss_pred             CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHH
Confidence            67788889999999999999999999986542               2222222 246778888888753    222333


Q ss_pred             H-HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373        108 K-RIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       108 ~-~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      + -+|+.....|+.++||++|.++-.
T Consensus       540 ~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  540 YETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            3 589999999999999999876543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.29  E-value=0.042  Score=46.31  Aligned_cols=117  Identities=13%  Similarity=0.090  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHccCHHHHHhhhhc--cCChHHHHHHHHHHHHcCCHHHHHHHHHHhc----CHHHHHHHHhhccCCHHHHH
Q psy12373         22 YEKAATCYIQLKNWTKIGQLLPH--IKSATTFIQYAKAKEAMGSYRESVGAYERAE----DYDNVVRVDLDHLNDIRHAV   95 (198)
Q Consensus        22 ~~~Ai~~y~~~~~~~~a~~l~~~--~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~----~~~~av~l~~~~~~~~~~a~   95 (198)
                      ...-|.-.+..|+...|.++...  ++++.....-=+.+...|+|++=.++- +..    -|+--|+.|+ ..|+.++|.
T Consensus       180 l~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa-~skKsPIGyepFv~~~~-~~~~~~eA~  257 (319)
T PF04840_consen  180 LNDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFA-KSKKSPIGYEPFVEACL-KYGNKKEAS  257 (319)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHH-hCCCCCCChHHHHHHHH-HCCCHHHHH
Confidence            34456666677777777777764  444444433356677788887765543 323    2567788888 667788888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcc
Q psy12373         96 DIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHK  144 (198)
Q Consensus        96 ~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~  144 (198)
                      .++.+.++.+    -..+|.+.|++.+|++.=.+.++.+.=..|....+
T Consensus       258 ~yI~k~~~~~----rv~~y~~~~~~~~A~~~A~~~kd~~~L~~i~~~~~  302 (319)
T PF04840_consen  258 KYIPKIPDEE----RVEMYLKCGDYKEAAQEAFKEKDIDLLKQILKRCP  302 (319)
T ss_pred             HHHHhCChHH----HHHHHHHCCCHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence            7777654422    23456777888888888888887766666655543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG2002|consensus

Probab=96.27  E-value=0.23  Score=47.10  Aligned_cols=153  Identities=15%  Similarity=0.169  Sum_probs=100.4

Q ss_pred             HHHHHccCHHHHHhhhhcc-----C---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---------HHHHHHHHhhccC
Q psy12373         27 TCYIQLKNWTKIGQLLPHI-----K---SATTFIQYAKAKEAMGSYRESVGAYERAED---------YDNVVRVDLDHLN   89 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~~-----~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---------~~~av~l~~~~~~   89 (198)
                      ..|..-+++..+..++.+.     .   -..-++|+|+.+-.+|+|+.|-.+|..+-.         +....+|++ +.|
T Consensus       278 n~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i-~~~  356 (1018)
T KOG2002|consen  278 NHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYI-KRG  356 (1018)
T ss_pred             HHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHH-Hhc
Confidence            3455567777776666431     1   234478999999999999999999988752         256788999 889


Q ss_pred             CHHHHH----HHHHhcCC-HHHHHHHHHHHHhcC----CHHHHHHHHHHcCChH-----HHHHHH---HHcch---hhHH
Q psy12373         90 DIRHAV----DIVKAKKC-TEGAKRIADYCNKHG----DFGAAIHFLILSKCYQ-----DAFNLS---QQHKK---LHEF  149 (198)
Q Consensus        90 ~~~~a~----~l~~~~~~-~~~~~~~A~~~~~~g----~~~~Av~~y~~ag~~~-----~A~~la---~~~~~---~~~~  149 (198)
                      +.+.+.    ++.+..|+ ++.+..+|.-|...+    ..+.|..+..++-...     .-+.++   .+.+.   ++.+
T Consensus       357 dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~  436 (1018)
T KOG2002|consen  357 DLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAY  436 (1018)
T ss_pred             hHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHH
Confidence            999875    34455554 556666676666553    3456666665554433     223333   22221   2333


Q ss_pred             hhhhh----hcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        150 GKFLL----EEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       150 ~~~~~----l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..++.    .....+|++++.+|......|+++.|
T Consensus       437 ~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A  471 (1018)
T KOG2002|consen  437 GNALDILESKGKQIPPEVLNNVASLHFRLGNIEKA  471 (1018)
T ss_pred             HHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHH
Confidence            33331    23457899999999988899999998

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=96.25  E-value=0.028  Score=41.46  Aligned_cols=47  Identities=17%  Similarity=0.268  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcC--HHH-----HHHHHhhccCCHHHHHHH
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAED--YDN-----VVRVDLDHLNDIRHAVDI   97 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~~~-----av~l~~~~~~~~~~a~~l   97 (198)
                      ....+|+.+...|++++|+..+....+  +..     -=+++. ..|++++|...
T Consensus        87 a~l~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~-~~g~~~~A~~~  140 (145)
T PF09976_consen   87 ARLRLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYL-AQGDYDEARAA  140 (145)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHH-HCCCHHHHHHH
Confidence            344677777888888888877765432  211     123444 56777776543

>KOG0495|consensus

Probab=96.24  E-value=0.19  Score=46.08  Aligned_cols=171  Identities=13%  Similarity=0.102  Sum_probs=101.8

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHc-------cCHHHHHhhhhc----cC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQL-------KNWTKIGQLLPH----IK-SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~-------~~~~~a~~l~~~----~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +.++.|-.+|.++--...-.++|.++       ++.+.+.+++..    .+ =+.++..+|+.+|.+++.+.|.+.|..+
T Consensus       632 ~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G  711 (913)
T KOG0495|consen  632 DELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQG  711 (913)
T ss_pred             ccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhc
Confidence            56777777777665444444444443       455567777752    22 4578889999999999999999999987


Q ss_pred             cC--------HHHHHHHHhhccCCHHHHHHHHHh--cCCHHH-HHHHHH--HHHhcCCHHHHHHHHHHcCC--------h
Q psy12373         75 ED--------YDNVVRVDLDHLNDIRHAVDIVKA--KKCTEG-AKRIAD--YCNKHGDFGAAIHFLILSKC--------Y  133 (198)
Q Consensus        75 ~~--------~~~av~l~~~~~~~~~~a~~l~~~--~~~~~~-~~~~A~--~~~~~g~~~~Av~~y~~ag~--------~  133 (198)
                      -.        |....++=- ..|++-+|-.|...  ..+|.. ...++.  .=.+.|..+.|-.+..+|=+        |
T Consensus       712 ~k~cP~~ipLWllLakleE-k~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LW  790 (913)
T KOG0495|consen  712 TKKCPNSIPLWLLLAKLEE-KDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLW  790 (913)
T ss_pred             cccCCCCchHHHHHHHHHH-HhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhH
Confidence            42        233333332 34555555555432  122322 222222  22244555555555544432        6


Q ss_pred             HHHHHHHHHcchhhHHhhhhhhc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        134 QDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       134 ~~A~~la~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .+||.|....+.--...++  |. -+.+|-+++-+|..|=.+.++++|
T Consensus       791 aEaI~le~~~~rkTks~DA--Lkkce~dphVllaia~lfw~e~k~~ka  836 (913)
T KOG0495|consen  791 AEAIWLEPRPQRKTKSIDA--LKKCEHDPHVLLAIAKLFWSEKKIEKA  836 (913)
T ss_pred             HHHHHhccCcccchHHHHH--HHhccCCchhHHHHHHHHHHHHHHHHH
Confidence            6666666555432222333  33 367899999999988888888887

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=96.12  E-value=0.28  Score=41.38  Aligned_cols=125  Identities=15%  Similarity=0.193  Sum_probs=73.0

Q ss_pred             chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc---cC-------ChHHHHHHHHHHHHcCCHHHHH
Q psy12373          7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH---IK-------SATTFIQYAKAKEAMGSYRESV   68 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~---~~-------~~~l~~~~A~~~e~~g~~~~A~   68 (198)
                      |.++.|+++|..--+        ....+.+|..-++|.+|+..+.+   ++       -...+..+|.......+.+.|.
T Consensus       121 Gl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~  200 (389)
T COG2956         121 GLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAR  200 (389)
T ss_pred             hhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHH
Confidence            677777777776555        33456677777888887666652   22       2345556677777777777777


Q ss_pred             HHHHHhcCH-HHHHH-------HHhhccCCHHHHHHHHH----hcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         69 GAYERAEDY-DNVVR-------VDLDHLNDIRHAVDIVK----AKKC--TEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        69 ~~Y~ka~~~-~~av~-------l~~~~~~~~~~a~~l~~----~~~~--~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      ....||-.- .+-||       +.. ..|+.++|++.-+    +.+.  +.+...+...|...|+..+...+.+++..
T Consensus       201 ~~l~kAlqa~~~cvRAsi~lG~v~~-~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~  277 (389)
T COG2956         201 ELLKKALQADKKCVRASIILGRVEL-AKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME  277 (389)
T ss_pred             HHHHHHHhhCccceehhhhhhHHHH-hccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            777776422 11222       233 3456666654332    2222  22333455566677777777777766654

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=96.00  E-value=0.35  Score=45.16  Aligned_cols=136  Identities=18%  Similarity=0.183  Sum_probs=97.5

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHH--------HHcCCHHHHHHHHHHhcCHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAK--------EAMGSYRESVGAYERAEDYD   78 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~--------e~~g~~~~A~~~Y~ka~~~~   78 (198)
                      ..+-+|+..|+-.|.+..|+..|..+++|.....+........ ...+|.-+        ...|+-..+...|.  .++.
T Consensus       936 ~~~~~aa~aye~~gK~~Ea~gay~sA~mwrec~si~~q~~~~e-~~~~AE~L~S~l~ve~R~~~da~~i~l~yl--~N~~ 1012 (1243)
T COG5290         936 LYHISAAKAYEVEGKYIEAHGAYDSALMWRECGSISTQEKGYE-FNLCAELLPSDLLVEFRKAGDAEKILLTYL--ENLY 1012 (1243)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhcchH-HHHHHHhhhhhHHHHHHHhcCHHHHHHHHH--hCHH
Confidence            4677999999999999999999999999999887765433222 33333322        23555555555554  4677


Q ss_pred             HHHHHHhhccCCHHHHHHHHHhcCCHHHHHH--HHHHHHhc-CCHHHHHHHHHHcCChHHHHHHHHHcchh
Q psy12373         79 NVVRVDLDHLNDIRHAVDIVKAKKCTEGAKR--IADYCNKH-GDFGAAIHFLILSKCYQDAFNLSQQHKKL  146 (198)
Q Consensus        79 ~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~--~A~~~~~~-g~~~~Av~~y~~ag~~~~A~~la~~~~~~  146 (198)
                      .||-++| +..+.++|+.++..++..+....  .+...+.= |..+-+...|.+.+.-.++++++...+..
T Consensus      1013 eava~~c-kgs~y~ea~~~a~~s~~~e~~k~~~~~~LgE~Fg~~~El~ad~~~qikSq~~rlrvlr~kk~e 1082 (1243)
T COG5290        1013 EAVAMDC-KGSEYREAFCEAMVSRLVESEKHYEAGQLGEEFGGKPELAADEYVQIKSQGDRLRVLRDKKCE 1082 (1243)
T ss_pred             HHHHHHc-ccccchHHHHHHHHhhhhhHHHHhhhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHhhhhhc
Confidence            8888888 77889999988887766555442  23333443 44678899999999999999999777654

>KOG0553|consensus

Probab=95.99  E-value=0.044  Score=45.34  Aligned_cols=92  Identities=17%  Similarity=0.200  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCH--HHHH------HHHhhccCCHHHHHHHHHhcC----C-HHHHHHHHHHHHhc
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDY--DNVV------RVDLDHLNDIRHAVDIVKAKK----C-TEGAKRIADYCNKH  117 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~--~~av------~l~~~~~~~~~~a~~l~~~~~----~-~~~~~~~A~~~~~~  117 (198)
                      +..-|.-+...++|.+|+..|.+|=.+  .+||      ..|. .+|+.+.|++=|+..-    . ......++..|...
T Consensus        84 LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~-~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~  162 (304)
T KOG0553|consen   84 LKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYS-KLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLAL  162 (304)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHH-HhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHcc
Confidence            334577888999999999999998643  2333      2345 6899999998887532    1 22344678889999


Q ss_pred             CCHHHHHHHHHHcCC-------hHHHHHHHHHc
Q psy12373        118 GDFGAAIHFLILSKC-------YQDAFNLSQQH  143 (198)
Q Consensus       118 g~~~~Av~~y~~ag~-------~~~A~~la~~~  143 (198)
                      |++++|++.|.||=.       |.+.+++|.+.
T Consensus       163 gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~  195 (304)
T KOG0553|consen  163 GKYEEAIEAYKKALELDPDNESYKSNLKIAEQK  195 (304)
T ss_pred             CcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHH
Confidence            999999999999976       45566666544

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=95.99  E-value=0.21  Score=47.58  Aligned_cols=113  Identities=11%  Similarity=0.047  Sum_probs=69.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR   92 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~   92 (198)
                      +.+|.+.|+.++|..+|.+.-.++        .+++.++..+|-.+... +.+.|+++|.+|      |..++ ..+++.
T Consensus       123 A~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KA------V~~~i-~~kq~~  186 (906)
T PRK14720        123 AEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-DKEKAITYLKKA------IYRFI-KKKQYV  186 (906)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-hHHHHHHHHHHH------HHHHH-hhhcch
Confidence            344444455555555544332222        45889999999999999 999999999998      99999 556777


Q ss_pred             HHHHH----HHhcCC-HHHHHHHHHHHHhcCCH-------HHHHHHHHHcCChHHHHHHHH
Q psy12373         93 HAVDI----VKAKKC-TEGAKRIADYCNKHGDF-------GAAIHFLILSKCYQDAFNLSQ  141 (198)
Q Consensus        93 ~a~~l----~~~~~~-~~~~~~~A~~~~~~g~~-------~~Av~~y~~ag~~~~A~~la~  141 (198)
                      ++..+    +...++ .+.+..+=+...+.-.+       .--.+.|...++|++++.+.+
T Consensus       187 ~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK  247 (906)
T PRK14720        187 GIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILK  247 (906)
T ss_pred             HHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence            66553    332222 23333333332222112       234467778888888877764

>KOG1129|consensus

Probab=95.95  E-value=0.55  Score=39.84  Aligned_cols=174  Identities=12%  Similarity=0.082  Sum_probs=103.0

Q ss_pred             cchHHHHHHHHHHcCC-------HHHHHHHHHHccCHHHHHhhhh----ccC-ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESAGN-------YEKAATCYIQLKNWTKIGQLLP----HIK-SATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~-------~~~Ai~~y~~~~~~~~a~~l~~----~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      +|++++|.+.+..+=.       +-..-+.|.+..+...|..++.    ..+ +..++.-.|+.+|.++++++|.++|..
T Consensus       236 Lgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~  315 (478)
T KOG1129|consen  236 LGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKL  315 (478)
T ss_pred             hcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHH
Confidence            4667777776665522       2233445555666666544443    222 777888899999999999999999998


Q ss_pred             hcCHH----HHHHH----HhhccCCHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC----ChHHH
Q psy12373         74 AEDYD----NVVRV----DLDHLNDIRHAVDIVKA-----KKCTEGAKRIADYCNKHGDFGAAIHFLILSK----CYQDA  136 (198)
Q Consensus        74 a~~~~----~av~l----~~~~~~~~~~a~~l~~~-----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag----~~~~A  136 (198)
                      .-+..    .+|-+    +. ..|+++-|++.=|.     ..+++.+..++--|.--+++|-++-.|.+|-    +.++|
T Consensus       316 vlk~~~~nvEaiAcia~~yf-Y~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~a  394 (478)
T KOG1129|consen  316 VLKLHPINVEAIACIAVGYF-YDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQA  394 (478)
T ss_pred             HHhcCCccceeeeeeeeccc-cCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchh
Confidence            75432    11111    22 35788888776553     3568888888887777777776666665543    23444


Q ss_pred             HHHHHH-------cchhhHHhhhhhh---cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        137 FNLSQQ-------HKKLHEFGKFLLE---EDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       137 ~~la~~-------~~~~~~~~~~~~l---~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..+=-.       -|.+.......+|   ++....+.+.++|..-...|+.++|
T Consensus       395 aDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~A  448 (478)
T KOG1129|consen  395 ADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGA  448 (478)
T ss_pred             hhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHH
Confidence            333211       1222111111111   2233456677777776677777666

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=95.95  E-value=0.15  Score=35.27  Aligned_cols=69  Identities=3%  Similarity=0.056  Sum_probs=49.5

Q ss_pred             cchHHHHHHHHHHcC--C---------HHHHHHHHHHccCHHHHHhhhhcc----C----ChHHHHHHHHHHHHcCCHHH
Q psy12373          6 LTLDRGKWTLYESAG--N---------YEKAATCYIQLKNWTKIGQLLPHI----K----SATTFIQYAKAKEAMGSYRE   66 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g--~---------~~~Ai~~y~~~~~~~~a~~l~~~~----~----~~~l~~~~A~~~e~~g~~~~   66 (198)
                      .|++++|.++|.+.=  .         .-....+|...++++.|..++..+    +    .+..+..+|..+...|++++
T Consensus        15 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~   94 (119)
T TIGR02795        15 AGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSLQELGDKEK   94 (119)
T ss_pred             cCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHHHHhCChHH
Confidence            467888888887651  1         122567778888888887777532    1    24567788889999999999


Q ss_pred             HHHHHHHh
Q psy12373         67 SVGAYERA   74 (198)
Q Consensus        67 A~~~Y~ka   74 (198)
                      |+++|.++
T Consensus        95 A~~~~~~~  102 (119)
T TIGR02795        95 AKATLQQV  102 (119)
T ss_pred             HHHHHHHH
Confidence            99888776

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2076|consensus

Probab=95.95  E-value=0.062  Score=50.23  Aligned_cols=107  Identities=12%  Similarity=0.257  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--------
Q psy12373         62 GSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC--------  132 (198)
Q Consensus        62 g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~--------  132 (198)
                      +.+.+|-..|.+ |+++.|.+|+.|          +.++.| .+.....+|..|+..||.+++..+...|-+        
T Consensus       141 ~ll~eAN~lfar-g~~eeA~~i~~E----------vIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~  209 (895)
T KOG2076|consen  141 QLLGEANNLFAR-GDLEEAEEILME----------VIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYEL  209 (895)
T ss_pred             HHHHHHHHHHHh-CCHHHHHHHHHH----------HHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHH
Confidence            346677777777 777777777773          444434 355667899999999999999988877654        


Q ss_pred             hHHHHHHHHHcchhhH----HhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        133 YQDAFNLSQQHKKLHE----FGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       133 ~~~A~~la~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |..--.+..+.++.+.    +.+++.+ .+..-+....-+..|++.|+...|
T Consensus       210 W~~ladls~~~~~i~qA~~cy~rAI~~-~p~n~~~~~ers~L~~~~G~~~~A  260 (895)
T KOG2076|consen  210 WKRLADLSEQLGNINQARYCYSRAIQA-NPSNWELIYERSSLYQKTGDLKRA  260 (895)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHhChHHHH
Confidence            3333333344443321    1222111 233455666666677777766666

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.92  E-value=0.21  Score=47.36  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=11.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhc
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      .++..+-..|+.++|+.++.++-
T Consensus        73 dll~l~~~~G~~~~A~~~~eka~   95 (822)
T PRK14574         73 DWLQIAGWAGRDQEVIDVYERYQ   95 (822)
T ss_pred             HHHHHHHHcCCcHHHHHHHHHhc
Confidence            44444444455555555555544

>KOG1125|consensus

Probab=95.89  E-value=0.015  Score=51.74  Aligned_cols=86  Identities=17%  Similarity=0.332  Sum_probs=56.1

Q ss_pred             HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHH
Q psy12373         15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHA   94 (198)
Q Consensus        15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a   94 (198)
                      +|--.|++++||+||..+        |-.+..|-.+..++|-.+.+.....+||..|.+|      +.+.=   |-    
T Consensus       439 Ly~ls~efdraiDcf~~A--------L~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA------LqLqP---~y----  497 (579)
T KOG1125|consen  439 LYNLSGEFDRAVDCFEAA--------LQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA------LQLQP---GY----  497 (579)
T ss_pred             HHhcchHHHHHHHHHHHH--------HhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH------HhcCC---Ce----
Confidence            455556666666666432        1123447778888888888888888999888887      43321   00    


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         95 VDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        95 ~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                               ..+-+.+|--|...|.|++|+++|..|
T Consensus       498 ---------VR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  498 ---------VRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             ---------eeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence                     112345677778888888888887654

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=95.88  E-value=0.09  Score=33.42  Aligned_cols=85  Identities=15%  Similarity=0.193  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +..+|..+...|++++|+..|.++      +++.-                .++.....+|..+...|++++|++.|.++
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~------~~~~~----------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~~   60 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKA------LELDP----------------DNADAYYNLAAAYYKLGKYEEALEDYEKA   60 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHH------HhcCC----------------ccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445666666777777777776655      32221                11133445666666666666666655443


Q ss_pred             CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      -.                      +. +..+..+..++..+...|++++|
T Consensus        61 ~~----------------------~~-~~~~~~~~~~~~~~~~~~~~~~a   87 (100)
T cd00189          61 LE----------------------LD-PDNAKAYYNLGLAYYKLGKYEEA   87 (100)
T ss_pred             Hh----------------------CC-CcchhHHHHHHHHHHHHHhHHHH
Confidence            21                      11 22446777788888777877776

>KOG2076|consensus

Probab=95.87  E-value=0.32  Score=45.70  Aligned_cols=58  Identities=14%  Similarity=0.197  Sum_probs=43.2

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +++.+|-.+|.+ |+.+.|.++.         .++++..+ .+..+..+|..+|..|+.+.+..+...|
T Consensus       141 ~ll~eAN~lfar-g~~eeA~~i~---------~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llA  199 (895)
T KOG2076|consen  141 QLLGEANNLFAR-GDLEEAEEIL---------MEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLA  199 (895)
T ss_pred             HHHHHHHHHHHh-CCHHHHHHHH---------HHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence            566677777777 7777777766         34444333 6678889999999999999999888776

>KOG2247|consensus

Probab=95.87  E-value=0.00064  Score=59.40  Aligned_cols=167  Identities=9%  Similarity=-0.076  Sum_probs=114.8

Q ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----
Q psy12373          6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---SATTFIQYAKAKEAMGSYRESVGAYERAEDY-----   77 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----   77 (198)
                      +-.|++|.+.+.....+-+|+.|--+. +|+.+.-++.+.+   -+.+-...++.+|..|++..+.-.|++.+..     
T Consensus        58 v~~YD~agq~~le~n~tg~aldm~wDk-egdvlavlAek~~piylwd~n~eytqqLE~gg~~s~sll~wsKg~~el~ig~  136 (615)
T KOG2247|consen   58 VIYYDKAGQVILELNPTGKALDMAWDK-EGDVLAVLAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSKGTPELVIGN  136 (615)
T ss_pred             HHhhhhhcceecccCCchhHhhhhhcc-ccchhhhhhhcCCCeeechhhhhhHHHHhccCcchHHHHhhccCCccccccc
Confidence            357899999999999999999999988 9999988887755   6777888999999999999999999997632     


Q ss_pred             -HHHHHHHhh-------ccC-CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhH
Q psy12373         78 -DNVVRVDLD-------HLN-DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHE  148 (198)
Q Consensus        78 -~~av~l~~~-------~~~-~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~  148 (198)
                       ..-+++|--       .+| +...-..++.+..+......+++.+...++..+++.+|...|.++++--.+-.-+++.-
T Consensus       137 ~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil~dcd~~L~v~~qegeta~ltevggepdnm~~~y~k~n~w~k  216 (615)
T KOG2247|consen  137 NAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVILCDCDNTLSVTTQEGETASLTEVGGEPDNMDFFYGKVNGWGK  216 (615)
T ss_pred             cccceEEEeccchhhhhhhcccccceeEEEecccceeeecCcHHHHHHhhhccceeeeeeccCccchhhhheeeeecccc
Confidence             111222210       112 22222222222222223345677788888888888888888888888666555544422


Q ss_pred             HhhhhhhcCCCCHHHHHHHHHHHHhCC
Q psy12373        149 FGKFLLEEDEPNPVELKRLAIHFEEDK  175 (198)
Q Consensus       149 ~~~~~~l~~~~~~~~~~~~A~~~e~~g  175 (198)
                      ..++  +..-.+++.++..|.+-|..+
T Consensus       217 age~--m~sVvsgKkhl~yak~nE~D~  241 (615)
T KOG2247|consen  217 AGET--MVSVVSGKKHLMYAKYNELDE  241 (615)
T ss_pred             ccce--eeeeeecHHHHHHHhhcCCCC
Confidence            2333  344556788888888766655

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=95.86  E-value=1  Score=38.73  Aligned_cols=173  Identities=14%  Similarity=0.065  Sum_probs=104.4

Q ss_pred             chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhcc----CChHHHHHH--HHHHHHcCCHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPHI----KSATTFIQY--AKAKEAMGSYRESVGAYE   72 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~~----~~~~l~~~~--A~~~e~~g~~~~A~~~Y~   72 (198)
                      |.|..|+++..++.+        +-.|++.--..|+++++-+.+.++    +++++...+  ++.+-..|++..|.+--.
T Consensus        98 G~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~  177 (400)
T COG3071          98 GDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVD  177 (400)
T ss_pred             CcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHH
Confidence            556666666665432        334555555667777765555432    355655544  778889999988877655


Q ss_pred             HhcCH--------HHHHHHHhhccCCHHHHHHHHHhc------CCHHH--HHHHH------------------HHHHhc-
Q psy12373         73 RAEDY--------DNVVRVDLDHLNDIRHAVDIVKAK------KCTEG--AKRIA------------------DYCNKH-  117 (198)
Q Consensus        73 ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~------~~~~~--~~~~A------------------~~~~~~-  117 (198)
                      +.-..        .-++++|+ +.|+|+.+..+..+.      .+++.  ..+.|                  +|+... 
T Consensus       178 ~ll~~~pr~~~vlrLa~r~y~-~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~p  256 (400)
T COG3071         178 QLLEMTPRHPEVLRLALRAYI-RLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQP  256 (400)
T ss_pred             HHHHhCcCChHHHHHHHHHHH-HhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhcc
Confidence            55432        45567777 788999887776432      12221  11111                  233221 


Q ss_pred             ----CCH---HHHHHHHHHcCChHHHHHHHHHcch--hh-HHhhhh-h----------------hc-CCCCHHHHHHHHH
Q psy12373        118 ----GDF---GAAIHFLILSKCYQDAFNLSQQHKK--LH-EFGKFL-L----------------EE-DEPNPVELKRLAI  169 (198)
Q Consensus       118 ----g~~---~~Av~~y~~ag~~~~A~~la~~~~~--~~-~~~~~~-~----------------l~-~~~~~~~~~~~A~  169 (198)
                          .++   -..++-|+..|.+++|.++.+++=+  +| .+...+ .                +. -+.+|.++..+++
T Consensus       257 r~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~  336 (400)
T COG3071         257 RKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGR  336 (400)
T ss_pred             HHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHH
Confidence                111   3577889999999999888765521  11 111111 0                12 3567889999999


Q ss_pred             HHHhCCChhhH
Q psy12373        170 HFEEDKGVLTS  180 (198)
Q Consensus       170 ~~e~~g~~~~A  180 (198)
                      .+..++.|.+|
T Consensus       337 L~~k~~~w~kA  347 (400)
T COG3071         337 LALKNKLWGKA  347 (400)
T ss_pred             HHHHhhHHHHH
Confidence            99999999888

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.84  E-value=0.52  Score=39.43  Aligned_cols=82  Identities=17%  Similarity=0.137  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHhcC-----CHHH----HHHHH
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKAKK-----CTEG----AKRIA  111 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~~-----~~~~----~~~~A  111 (198)
                      .....+|..+...|++++|++.|.++-..        .....++. ..|++++|.....+.-     ++..    ...+|
T Consensus       115 ~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~-~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la  193 (355)
T cd05804         115 YLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE-MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLA  193 (355)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHH
Confidence            34556788999999999999999997532        23345566 6899999998876421     1221    22578


Q ss_pred             HHHHhcCCHHHHHHHHHHcC
Q psy12373        112 DYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus       112 ~~~~~~g~~~~Av~~y~~ag  131 (198)
                      ..+...|++++|+..|.++.
T Consensus       194 ~~~~~~G~~~~A~~~~~~~~  213 (355)
T cd05804         194 LFYLERGDYEAALAIYDTHI  213 (355)
T ss_pred             HHHHHCCCHHHHHHHHHHHh
Confidence            99999999999999999875

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK14574 hmsH outer membrane protein; Provisional

Probab=95.83  E-value=1.2  Score=42.34  Aligned_cols=69  Identities=4%  Similarity=-0.056  Sum_probs=40.0

Q ss_pred             chHHHHHHHHHHcC--CHHH--H----HHHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAG--NYEK--A----ATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g--~~~~--A----i~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |++..|...|.++=  ++..  +    +.++...|+++.|...+.+.-     ....+.-+|..+...|+++.|+++|.+
T Consensus        48 Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~k  127 (822)
T PRK14574         48 GDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQS  127 (822)
T ss_pred             CCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            45555655555542  2221  1    455566666666666665432     123333447777888888888888877


Q ss_pred             hc
Q psy12373         74 AE   75 (198)
Q Consensus        74 a~   75 (198)
                      +-
T Consensus       128 aL  129 (822)
T PRK14574        128 SL  129 (822)
T ss_pred             HH
Confidence            63

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.82  E-value=0.21  Score=40.82  Aligned_cols=96  Identities=18%  Similarity=0.276  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD   86 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~   86 (198)
                      .|+.|-.+|.. |++..|..-|..-      .+-.. ..-.++.++|+|+.+-.+|+|++|+..|.++      ++=+- 
T Consensus       144 ~Y~~A~~~~ks-gdy~~A~~~F~~f------i~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~------~k~~P-  209 (262)
T COG1729         144 LYNAALDLYKS-GDYAEAEQAFQAF------IKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARV------VKDYP-  209 (262)
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHH------HHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHH------HHhCC-
Confidence            35555555443 5566666665321      11111 1227899999999999999999999999887      43222 


Q ss_pred             ccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         87 HLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus        87 ~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                      .            .-..|+.+..+|.-+...|+.++|-..|..
T Consensus       210 ~------------s~KApdallKlg~~~~~l~~~d~A~atl~q  240 (262)
T COG1729         210 K------------SPKAPDALLKLGVSLGRLGNTDEACATLQQ  240 (262)
T ss_pred             C------------CCCChHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            1            012356677778877777877777665543

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.82  E-value=0.81  Score=42.05  Aligned_cols=95  Identities=20%  Similarity=0.132  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC---CHHHHHHHHHHH----HhcCCHHH
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK---CTEGAKRIADYC----NKHGDFGA  122 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~---~~~~~~~~A~~~----~~~g~~~~  122 (198)
                      ....-|=.+-+...|..|+-+|.-||+..+||++|++++++++=|+-|+|-..   .|.....+-++.    .+.||.=-
T Consensus       454 AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a~~~~d~wl  533 (631)
T PF12234_consen  454 AALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEAIKEGDRWL  533 (631)
T ss_pred             HHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhccccccCCHHH
Confidence            33344557788999999999999999999999999999999999999998432   122211222222    24566555


Q ss_pred             HHHHHHHcCChHHHHHHHHHcc
Q psy12373        123 AIHFLILSKCYQDAFNLSQQHK  144 (198)
Q Consensus       123 Av~~y~~ag~~~~A~~la~~~~  144 (198)
                      +--.|-.-|++++|++......
T Consensus       534 ~s~~~W~L~~~~~ai~~Li~~~  555 (631)
T PF12234_consen  534 ASWAFWMLGDYDEAIRALISPP  555 (631)
T ss_pred             HHHHHHhcCCHHHHHHHHhcCc
Confidence            5667888899999988876554

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PRK11189 lipoprotein NlpI; Provisional

Probab=95.81  E-value=0.25  Score=41.00  Aligned_cols=28  Identities=11%  Similarity=0.088  Sum_probs=23.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      +..+...|..+...|++++|+..|.++-
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al   91 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQAL   91 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            4567788999999999999999888873

>KOG1128|consensus

Probab=95.80  E-value=0.16  Score=46.78  Aligned_cols=123  Identities=9%  Similarity=0.050  Sum_probs=78.0

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--HHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--DNV   80 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--~~a   80 (198)
                      |...+|...|++-+.++.-|.||+.+|+-.+|..+...    -+++-++.-+|...-+.--|+.|.+++-.-..-  ..-
T Consensus       412 GitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~  491 (777)
T KOG1128|consen  412 GITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSL  491 (777)
T ss_pred             chHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhh
Confidence            67788888899999999999999999988887766642    346677777788777777777777765443211  111


Q ss_pred             HHHHhhccCCHHHHHHHHHhcC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         81 VRVDLDHLNDIRHAVDIVKAKK-----CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        81 v~l~~~~~~~~~~a~~l~~~~~-----~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      -+..+ ..++++++.+.-+.+-     ..+.-+.++-...+.+++..|++.|+++
T Consensus       492 ~~~~~-~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rc  545 (777)
T KOG1128|consen  492 ALLIL-SNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRC  545 (777)
T ss_pred             ccccc-cchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHH
Confidence            11123 3467777766654321     1111222222334667788888888775

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=95.74  E-value=0.84  Score=36.86  Aligned_cols=158  Identities=13%  Similarity=0.061  Sum_probs=85.3

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------H
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDY-------D   78 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------~   78 (198)
                      ..|.+|.+.+. .|++++|++.|.+...      .....+ ......++|..+-..+++++|+..|.+.=..       .
T Consensus        34 ~~Y~~A~~~~~-~g~y~~Ai~~f~~l~~------~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~  106 (243)
T PRK10866         34 EIYATAQQKLQ-DGNWKQAITQLEALDN------RYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNID  106 (243)
T ss_pred             HHHHHHHHHHH-CCCHHHHHHHHHHHHH------hCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchH
Confidence            34566666655 6888888888755422      211111 2334578999999999999999998776311       1


Q ss_pred             HHH--HHHh-hcc---------------CCHH-------HHHHHHHhcCCHHHHHH----HHHHHHhcCC-HHHHHHHHH
Q psy12373         79 NVV--RVDL-DHL---------------NDIR-------HAVDIVKAKKCTEGAKR----IADYCNKHGD-FGAAIHFLI  128 (198)
Q Consensus        79 ~av--~l~~-~~~---------------~~~~-------~a~~l~~~~~~~~~~~~----~A~~~~~~g~-~~~Av~~y~  128 (198)
                      .|.  ...+ ..+               .+..       ...++++..|++.-...    +...-..... --....+|.
T Consensus       107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~  186 (243)
T PRK10866        107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT  186 (243)
T ss_pred             HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            110  0000 000               0111       12245556665332111    1100001111 114567777


Q ss_pred             HcCChHHHHHHHHHcchhhHHhhhhh-h-cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        129 LSKCYQDAFNLSQQHKKLHEFGKFLL-E-EDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       129 ~ag~~~~A~~la~~~~~~~~~~~~~~-l-~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +-|.|.-|+.=+         ..++. = ..+..++.+..+...|...|..++|
T Consensus       187 ~~~~y~AA~~r~---------~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a  231 (243)
T PRK10866        187 KRGAYVAVVNRV---------EQMLRDYPDTQATRDALPLMENAYRQLQLNAQA  231 (243)
T ss_pred             HcCchHHHHHHH---------HHHHHHCCCCchHHHHHHHHHHHHHHcCChHHH
Confidence            778877765444         22210 1 2355688888888999888888777

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.72  E-value=0.022  Score=31.70  Aligned_cols=24  Identities=21%  Similarity=0.451  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +..+|+.+...|+|++|+++|+++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            567899999999999999999996

>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C

Probab=95.69  E-value=0.26  Score=40.84  Aligned_cols=165  Identities=13%  Similarity=0.028  Sum_probs=92.5

Q ss_pred             HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC----CH----HH--HHHHHHHhcCHHHHHHHH
Q psy12373         15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG----SY----RE--SVGAYERAEDYDNVVRVD   84 (198)
Q Consensus        15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g----~~----~~--A~~~Y~ka~~~~~av~l~   84 (198)
                      -+...|+.++|+++-.+.+.|..|.-|....+ ++++.+..+.|-...    +.    ..  ..=+-.-+|+...+|.-+
T Consensus         4 ~~Ll~G~~~~Av~~al~~~~wa~ALlLAs~~g-~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v~~l   82 (284)
T PF12931_consen    4 QLLLVGNREEAVELALDNGLWAHALLLASSLG-PELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAVDEL   82 (284)
T ss_dssp             HHHHTT-HHHHHHHHHHTT-HHHHHHHHHTS--HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHCCChHHHHHHHHhcC-HHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHHHHh
Confidence            36678999999999999999999988876654 555555544333332    22    11  111224467787777665


Q ss_pred             hhc-----------cCCHHHHHHHHHhcCCHH---HHHHHHHHHHhcCCHHHHHHHHHHcCChHHH----------HHHH
Q psy12373         85 LDH-----------LNDIRHAVDIVKAKKCTE---GAKRIADYCNKHGDFGAAIHFLILSKCYQDA----------FNLS  140 (198)
Q Consensus        85 ~~~-----------~~~~~~a~~l~~~~~~~~---~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A----------~~la  140 (198)
                      +..           .++|.+...++-....++   ....++..+...|+...|--.|+-+|....-          +.+.
T Consensus        83 ~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~~~l~~LGd~L~~~g~~~aA~iCYllag~~~~~~~~~~~~~~~~~ll  162 (284)
T PF12931_consen   83 VPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDSQALCALGDRLWQRGRVEAAHICYLLAGNPLSPIPWLDDSNSRFSLL  162 (284)
T ss_dssp             HH-----HHHHHHHHHSHHHHHHHHHHTS---SS-TT--HHHHHHHTT-HHHHHHHHHHTT---SSSBSSTTS--B--SS
T ss_pred             ccccccccccccchhcCHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCcchhHHHHhHcCCccCCcccccccchhhhhc
Confidence            522           458999877775544332   3456899999999999999999999852211          0000


Q ss_pred             H--Hcc------hhhHHhhhhhh-------cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        141 Q--QHK------KLHEFGKFLLE-------EDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       141 ~--~~~------~~~~~~~~~~l-------~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      -  ...      ..++++-+..+       ..+......+..|..+.+.|....|
T Consensus       163 g~~~~~~~~~~~~tEiyEya~~l~~~~~~~~~~~l~~~Kl~yA~~Lae~G~~~~A  217 (284)
T PF12931_consen  163 GASSFASPEAIILTEIYEYALSLSSNNPQFGLPHLQPYKLQYASLLAEQGLLSEA  217 (284)
T ss_dssp             S---TTSHHHHHHHHHHHHHHHT---STT---CCCHHHHHHHHHHHHHTT-HHHH
T ss_pred             cCCccccHHHHHHHHHHHHHHHhhccCCCcCcHHHHHHHHHHHHHHHhCCCHHHH
Confidence            0  000      01111111123       1133456677899999999988877

>KOG0686|consensus

Probab=95.54  E-value=0.4  Score=41.47  Aligned_cols=84  Identities=13%  Similarity=0.246  Sum_probs=56.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCHHHHHHHHHhc-CCHHHHH-------
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDIRHAVDIVKAK-KCTEGAK-------  108 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~~~a~~l~~~~-~~~~~~~-------  108 (198)
                      +..+..+|.++..-|+++.|+++|.|+.||           .+.|++.+ .+|+|-+......+. ..++...       
T Consensus       150 Rra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI-~~~nw~hv~sy~~~A~st~~~~~~~~q~v~  228 (466)
T KOG0686|consen  150 RRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSI-YMGNWGHVLSYISKAESTPDANENLAQEVP  228 (466)
T ss_pred             HHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHH-hhcchhhhhhHHHHHHhCchhhhhHHHhcC
Confidence            567889999999999999999999997776           45566666 678888876655321 1111111       


Q ss_pred             -----HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373        109 -----RIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       109 -----~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                           ..+......+++.+|+..|..+.-
T Consensus       229 ~kl~C~agLa~L~lkkyk~aa~~fL~~~~  257 (466)
T KOG0686|consen  229 AKLKCAAGLANLLLKKYKSAAKYFLLAEF  257 (466)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence                 112222234588888888887753

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=95.52  E-value=0.43  Score=41.44  Aligned_cols=108  Identities=15%  Similarity=0.100  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcC-----HHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHHHHHHHhcC
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAED-----YDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRIADYCNKHG  118 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-----~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~A~~~~~~g  118 (198)
                      -|..-+-+++...+.++.|+++|++...     .--.+++++ ..++-.+|+++..+.    | +......-|++|.++ 
T Consensus       170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l-~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k-  247 (395)
T PF09295_consen  170 YLVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYL-LMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSK-  247 (395)
T ss_pred             HHHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHH-hcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc-
Confidence            3444567788889999999999998653     233466666 567777788776542    2 222233334444444 


Q ss_pred             CHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        119 DFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       119 ~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                                  ++++.|+.+|++.      ..   + .+.+-+....+|+.|...|+|+.|
T Consensus       248 ------------~~~~lAL~iAk~a------v~---l-sP~~f~~W~~La~~Yi~~~d~e~A  287 (395)
T PF09295_consen  248 ------------KKYELALEIAKKA------VE---L-SPSEFETWYQLAECYIQLGDFENA  287 (395)
T ss_pred             ------------CCHHHHHHHHHHH------HH---h-CchhHHHHHHHHHHHHhcCCHHHH
Confidence                        4456666666444      11   1 244567788899999999999999

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=95.41  E-value=0.19  Score=42.90  Aligned_cols=85  Identities=16%  Similarity=0.032  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +...|......|+|++|+++|.++      |++.-                .++.....+|..+...|++++|+..+.++
T Consensus         5 l~~~a~~a~~~~~~~~Ai~~~~~A------l~~~P----------------~~~~a~~~~a~~~~~~g~~~eAl~~~~~A   62 (356)
T PLN03088          5 LEDKAKEAFVDDDFALAVDLYTQA------IDLDP----------------NNAELYADRAQANIKLGNFTEAVADANKA   62 (356)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            445577777888888888888777      43322                12233345566666666666555554332


Q ss_pred             CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      =.                      +. +..+..++.+|..|...|+|.+|
T Consensus        63 l~----------------------l~-P~~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         63 IE----------------------LD-PSLAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HH----------------------hC-cCCHHHHHHHHHHHHHhCCHHHH
Confidence            11                      11 23455666666666666666666

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=95.36  E-value=0.063  Score=33.74  Aligned_cols=48  Identities=21%  Similarity=0.286  Sum_probs=33.5

Q ss_pred             HcCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         18 SAGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +.|+++.|+++|.+.         +. ..++..+...+|..+...|++++|.+.+.+.
T Consensus         3 ~~~~~~~A~~~~~~~---------l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~   51 (68)
T PF14559_consen    3 KQGDYDEAIELLEKA---------LQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL   51 (68)
T ss_dssp             HTTHHHHHHHHHHHH---------HHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred             hccCHHHHHHHHHHH---------HHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456666666666433         22 2347788888899999999999988888776

...

>KOG1173|consensus

Probab=95.34  E-value=0.43  Score=42.83  Aligned_cols=130  Identities=9%  Similarity=0.106  Sum_probs=71.5

Q ss_pred             CCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------HHHHHHHhhccCCHH
Q psy12373         20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY-------DNVVRVDLDHLNDIR   92 (198)
Q Consensus        20 g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------~~av~l~~~~~~~~~   92 (198)
                      |+.|.|+.+|..      |.+++.....|.++  +|-.+...++++-|.++|..|-.+       .+=+-+..=+.+.|.
T Consensus       360 ~EhdQAmaaY~t------Aarl~~G~hlP~LY--lgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~  431 (611)
T KOG1173|consen  360 GEHDQAMAAYFT------AARLMPGCHLPSLY--LGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYP  431 (611)
T ss_pred             chHHHHHHHHHH------HHHhccCCcchHHH--HHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhH
Confidence            555666666544      36666665555544  777888888899999988887432       000111110234566


Q ss_pred             HHHHHHHhcC------CHH------HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCC
Q psy12373         93 HAVDIVKAKK------CTE------GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPN  160 (198)
Q Consensus        93 ~a~~l~~~~~------~~~------~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~  160 (198)
                      +|..+-+..-      .++      ....+|..+.+.+.+++||.+|.++=.                      + .+.+
T Consensus       432 ~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~----------------------l-~~k~  488 (611)
T KOG1173|consen  432 EALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL----------------------L-SPKD  488 (611)
T ss_pred             HHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH----------------------c-CCCc
Confidence            6554433210      111      122345555555555555555443311                      1 2456


Q ss_pred             HHHHHHHHHHHHhCCChhhH
Q psy12373        161 PVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       161 ~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ++++..+|=.+--.|+++.|
T Consensus       489 ~~~~asig~iy~llgnld~A  508 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKA  508 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHH
Confidence            77777777777777887777

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=95.32  E-value=1.4  Score=36.84  Aligned_cols=163  Identities=13%  Similarity=0.001  Sum_probs=87.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--HHH--HHH---H
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERAED--YDN--VVR---V   83 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~~~--av~---l   83 (198)
                      .+.+|...|+++.++..|.+.      .+... ..+..+.....|...-..|++++|.+++.++-+  +..  ++.   .
T Consensus        12 ~a~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~   85 (355)
T cd05804          12 AALLLLLGGERPAAAAKAAAA------AQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLG   85 (355)
T ss_pred             HHHHHHhcCCcchHHHHHHHH------HHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHH
Confidence            346666677777775544332      22222 233445555667788889999999998887542  222  221   1


Q ss_pred             Hh---hccCCHHHHHHHHHh----cCCH-HHHHHHHHHHHhcCCHHHHHHHHHHcCCh--------HHHHHHHHHcchhh
Q psy12373         84 DL---DHLNDIRHAVDIVKA----KKCT-EGAKRIADYCNKHGDFGAAIHFLILSKCY--------QDAFNLSQQHKKLH  147 (198)
Q Consensus        84 ~~---~~~~~~~~a~~l~~~----~~~~-~~~~~~A~~~~~~g~~~~Av~~y~~ag~~--------~~A~~la~~~~~~~  147 (198)
                      +.   ...+..+.+.+....    ++.. .....+|..+...|++++|+..+.++-..        ..--.+..+.|.++
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~  165 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFK  165 (355)
T ss_pred             HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHH
Confidence            11   123444444444321    1211 12335677888899999888777765331        11122233444443


Q ss_pred             HHhhhh----hhcCCC-C--HHHHHHHHHHHHhCCChhhH
Q psy12373        148 EFGKFL----LEEDEP-N--PVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       148 ~~~~~~----~l~~~~-~--~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .....+    .+.+.. .  ...+..+|..+...|++++|
T Consensus       166 eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A  205 (355)
T cd05804         166 EGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA  205 (355)
T ss_pred             HHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence            322222    112211 1  12345788999999999888

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=95.31  E-value=0.83  Score=35.63  Aligned_cols=78  Identities=14%  Similarity=-0.006  Sum_probs=53.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh---------HHHHHHHHHcch--hhHHhhhhh--hc-CCCCHHHHHHHH
Q psy12373        103 CTEGAKRIADYCNKHGDFGAAIHFLILSKCY---------QDAFNLSQQHKK--LHEFGKFLL--EE-DEPNPVELKRLA  168 (198)
Q Consensus       103 ~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~---------~~A~~la~~~~~--~~~~~~~~~--l~-~~~~~~~~~~~A  168 (198)
                      +.+.-..+|+.+...|++++|+..|.++-..         .-|.-+....|.  .+....+++  +. .+..+..+..+|
T Consensus        72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA  151 (198)
T PRK10370         72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLA  151 (198)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHH
Confidence            3555667899999999999999999888762         222223333333  232233321  33 456789999999


Q ss_pred             HHHHhCCChhhH
Q psy12373        169 IHFEEDKGVLTS  180 (198)
Q Consensus       169 ~~~e~~g~~~~A  180 (198)
                      ..+...|+|++|
T Consensus       152 ~~~~~~g~~~~A  163 (198)
T PRK10370        152 SDAFMQADYAQA  163 (198)
T ss_pred             HHHHHcCCHHHH
Confidence            999999999998

>KOG1173|consensus

Probab=95.27  E-value=0.14  Score=45.87  Aligned_cols=63  Identities=17%  Similarity=0.243  Sum_probs=48.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      -.++...+|..+...+.+++||.+|.++      +.+.-   ++|+             ....+|-.+.-.|.++.||++
T Consensus       454 w~p~~~NLGH~~Rkl~~~~eAI~~~q~a------L~l~~---k~~~-------------~~asig~iy~llgnld~Aid~  511 (611)
T KOG1173|consen  454 WEPTLNNLGHAYRKLNKYEEAIDYYQKA------LLLSP---KDAS-------------THASIGYIYHLLGNLDKAIDH  511 (611)
T ss_pred             hhHHHHhHHHHHHHHhhHHHHHHHHHHH------HHcCC---Cchh-------------HHHHHHHHHHHhcChHHHHHH
Confidence            3456788999999999999999999998      65554   2333             334566667788999999999


Q ss_pred             HHHcC
Q psy12373        127 LILSK  131 (198)
Q Consensus       127 y~~ag  131 (198)
                      |++|=
T Consensus       512 fhKaL  516 (611)
T KOG1173|consen  512 FHKAL  516 (611)
T ss_pred             HHHHH
Confidence            99874

>KOG0543|consensus

Probab=95.27  E-value=0.15  Score=43.84  Aligned_cols=84  Identities=14%  Similarity=0.135  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------------------HHHHHHHhhccCCHHHHHHHHHh-----
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY-----------------------DNVVRVDLDHLNDIRHAVDIVKA-----  100 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------------------~~av~l~~~~~~~~~~a~~l~~~-----  100 (198)
                      ......|+.+-..|.|..|+..|.++-.+                       .+..-+++ .++.|..|+..|.+     
T Consensus       209 ~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~l-Kl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  209 DRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYL-KLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHH-hhhhHHHHHHHHHHHHhcC
Confidence            34456677888888888888888885433                       22222344 57888888887753     


Q ss_pred             cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh
Q psy12373        101 KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCY  133 (198)
Q Consensus       101 ~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~  133 (198)
                      .++..+.+.-++.+...|+++.|+..|.++-..
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~  320 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKL  320 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence            345677888999999999999999999998763

>KOG0292|consensus

Probab=95.24  E-value=0.15  Score=48.02  Aligned_cols=118  Identities=13%  Similarity=0.135  Sum_probs=95.7

Q ss_pred             ccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHH---hcCCHHHHH
Q psy12373         32 LKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK---AKKCTEGAK  108 (198)
Q Consensus        32 ~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~---~~~~~~~~~  108 (198)
                      .|+.+-|.+.+.++++++....+|...-.+|+..-|..+|.+...|++.-=+|+ -.|+.++..++++   .-.+.....
T Consensus       656 ~gnle~ale~akkldd~d~w~rLge~Al~qgn~~IaEm~yQ~~knfekLsfLYl-iTgn~eKL~Km~~iae~r~D~~~~~  734 (1202)
T KOG0292|consen  656 CGNLEVALEAAKKLDDKDVWERLGEEALRQGNHQIAEMCYQRTKNFEKLSFLYL-ITGNLEKLSKMMKIAEIRNDATGQF  734 (1202)
T ss_pred             cCCHHHHHHHHHhcCcHHHHHHHHHHHHHhcchHHHHHHHHHhhhhhheeEEEE-EeCCHHHHHHHHHHHHhhhhhHHHH
Confidence            466677888888999999999999999999999999999999999999999999 7788888766554   323333333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373        109 RIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL  153 (198)
Q Consensus       109 ~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~  153 (198)
                      +-+-|   .||.++=++.+..+|..+.|.--|..||..+..+.+.
T Consensus       735 qnalY---l~dv~ervkIl~n~g~~~laylta~~~G~~~~ae~l~  776 (1202)
T KOG0292|consen  735 QNALY---LGDVKERVKILENGGQLPLAYLTAAAHGLEDQAEKLG  776 (1202)
T ss_pred             HHHHH---hccHHHHHHHHHhcCcccHHHHHHhhcCcHHHHHHHH
Confidence            44444   3788999999999999999999999999766555543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=95.24  E-value=0.34  Score=39.70  Aligned_cols=83  Identities=7%  Similarity=0.087  Sum_probs=54.6

Q ss_pred             HHHHHHHHhhccCCHHHHHHH----HHhcCC----HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhH
Q psy12373         77 YDNVVRVDLDHLNDIRHAVDI----VKAKKC----TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHE  148 (198)
Q Consensus        77 ~~~av~l~~~~~~~~~~a~~l----~~~~~~----~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~  148 (198)
                      |..|+.+.. ..|++++|+..    .+.+|+    +...+++|..+...|++++|+..|.+.=         ..++    
T Consensus       146 Y~~A~~l~~-~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv---------~~yP----  211 (263)
T PRK10803        146 YNAAIALVQ-DKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVV---------KNYP----  211 (263)
T ss_pred             HHHHHHHHH-hcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------HHCC----
Confidence            444466655 34667766543    344554    3566788999999999998887654321         1111    


Q ss_pred             HhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        149 FGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       149 ~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                             .....++.+++++..+...|++++|
T Consensus       212 -------~s~~~~dAl~klg~~~~~~g~~~~A  236 (263)
T PRK10803        212 -------KSPKAADAMFKVGVIMQDKGDTAKA  236 (263)
T ss_pred             -------CCcchhHHHHHHHHHHHHcCCHHHH
Confidence                   1234688888999999889998888

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.23  E-value=0.064  Score=28.77  Aligned_cols=27  Identities=26%  Similarity=0.502  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +..+..+|..+...|++++|+++|.++
T Consensus         1 a~~~~~lg~~~~~~~~~~~A~~~~~~a   27 (34)
T PF07719_consen    1 AEAWYYLGQAYYQLGNYEEAIEYFEKA   27 (34)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            356788999999999999999999998

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=95.20  E-value=0.5  Score=35.46  Aligned_cols=65  Identities=17%  Similarity=0.277  Sum_probs=45.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ...+..+|..+...|++++|+.+|.++      +.+..   +..+          .+.....+|..+...|++++|+.+|
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~a------l~l~~---~~~~----------~~~~~~~lg~~~~~~g~~~eA~~~~   95 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEA------MRLEI---DPYD----------RSYILYNIGLIHTSNGEHTKALEYY   95 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------Hhccc---cchh----------hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            445677899999999999999999888      44322   1111          1123456788888899999998887


Q ss_pred             HHcC
Q psy12373        128 ILSK  131 (198)
Q Consensus       128 ~~ag  131 (198)
                      .++=
T Consensus        96 ~~Al   99 (168)
T CHL00033         96 FQAL   99 (168)
T ss_pred             HHHH
Confidence            5543

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=95.17  E-value=0.31  Score=38.44  Aligned_cols=117  Identities=12%  Similarity=0.064  Sum_probs=65.1

Q ss_pred             chHHHHHHHHHHcC-----CH------HHHHHHHHHccCHHHHHhhhhcc----C-ChH---HHHHHHHHHHHc------
Q psy12373          7 TLDRGKWTLYESAG-----NY------EKAATCYIQLKNWTKIGQLLPHI----K-SAT---TFIQYAKAKEAM------   61 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g-----~~------~~Ai~~y~~~~~~~~a~~l~~~~----~-~~~---l~~~~A~~~e~~------   61 (198)
                      ++|++|...|++.=     ++      -....+|...++|+.|...+...    + ++.   .+..+|..+...      
T Consensus        47 ~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~  126 (235)
T TIGR03302        47 GDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDR  126 (235)
T ss_pred             CCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccC
Confidence            66777777776431     11      22335667778888877666532    1 222   466677766654      


Q ss_pred             --CCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHH-HHHhcCCH-HHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         62 --GSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVD-IVKAKKCT-EGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        62 --g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~-l~~~~~~~-~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                        |++++|++.|.++      ++..- ....-.++.. +....... .....+|..+...|++.+|+..|.++
T Consensus       127 ~~~~~~~A~~~~~~~------~~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~a  192 (235)
T TIGR03302       127 DQTAAREAFEAFQEL------IRRYP-NSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETV  192 (235)
T ss_pred             CHHHHHHHHHHHHHH------HHHCC-CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence              7889999988876      33333 1111112211 11111111 11234677777788888888777775

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.10  E-value=0.13  Score=32.76  Aligned_cols=52  Identities=25%  Similarity=0.384  Sum_probs=36.0

Q ss_pred             HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .|.+.+++++|++++.+.      ..+  ..+++.++...|..+...|++.+|++.|.++
T Consensus         4 ~~~~~~~~~~A~~~~~~~------l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERA------LEL--DPDDPELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             HHHhCCCHHHHHHHHHHH------HHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            445555555555554322      111  2337788888999999999999999999887

>KOG1129|consensus

Probab=95.07  E-value=1.1  Score=38.03  Aligned_cols=116  Identities=9%  Similarity=-0.012  Sum_probs=67.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhcCH-------HHHHHHHhhccCCHHHHHHHHHhc---CCHHHHH--HHHHHHHhcCCHH
Q psy12373         54 YAKAKEAMGSYRESVGAYERAEDY-------DNVVRVDLDHLNDIRHAVDIVKAK---KCTEGAK--RIADYCNKHGDFG  121 (198)
Q Consensus        54 ~A~~~e~~g~~~~A~~~Y~ka~~~-------~~av~l~~~~~~~~~~a~~l~~~~---~~~~~~~--~~A~~~~~~g~~~  121 (198)
                      +|+-+-.-|.+.+|.+.+..+-.-       .-.-++|. +..++..|..+..+.   .+.++..  -.|+..+..++.+
T Consensus       229 ~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~-ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~  307 (478)
T KOG1129|consen  229 MGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQ-RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQE  307 (478)
T ss_pred             HHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHH-HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHH
Confidence            356666677777776666655422       22334455 566666666655432   2223332  4677888888888


Q ss_pred             HHHHHHHHcCC---------------------hHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        122 AAIHFLILSKC---------------------YQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       122 ~Av~~y~~ag~---------------------~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +|+++|...-+                     ++.|++.+         ..++.++ ..+|+++.+++-.+.--++|+-+
T Consensus       308 ~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryY---------RRiLqmG-~~speLf~NigLCC~yaqQ~D~~  377 (478)
T KOG1129|consen  308 DALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYY---------RRILQMG-AQSPELFCNIGLCCLYAQQIDLV  377 (478)
T ss_pred             HHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHH---------HHHHHhc-CCChHHHhhHHHHHHhhcchhhh
Confidence            88888876432                     44444433         3332233 35788888888777666666544

>KOG2005|consensus

Probab=95.05  E-value=1.1  Score=41.26  Aligned_cols=124  Identities=8%  Similarity=0.108  Sum_probs=84.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC---hHHHHHHHHHH---HHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS---ATTFIQYAKAK---EAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~---~~l~~~~A~~~---e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      -..++.+.+--..|+++....+.++.+...++...-   -..+.-++.++   ++.-..+-|...|.|-+++.+|+++.+
T Consensus       184 iV~f~mkHNAE~eAiDlL~Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~ai  263 (878)
T KOG2005|consen  184 IVPFHMKHNAEFEAIDLLMEVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVGAI  263 (878)
T ss_pred             HHHHHHhccchhHHHHHHHHhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            334455555556666776666666666555554331   12223445555   566667889999999999999999999


Q ss_pred             hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH-----HHHHHHHHHcCChHHH
Q psy12373         86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDF-----GAAIHFLILSKCYQDA  136 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~-----~~Av~~y~~ag~~~~A  136 (198)
                       ++++.+.+.++.....++..-++++-.+.+.|-+     +++++--...++..+-
T Consensus       264 -~l~~~~~v~~vf~s~~D~~~kKQ~~ymLaR~~i~~e~~~~e~l~di~sN~~Lse~  318 (878)
T KOG2005|consen  264 -RLDDMKEVKEVFTSCTDPLLKKQMAYMLARHGIYFELSEDEELQDILSNGKLSEH  318 (878)
T ss_pred             -hcCcHHHHHHHHHhccCHHHHHHHHHHHHhcCCceecCcCHHHHHHHccccHHHH
Confidence             9999999999999988888777776666655543     2445555555554444

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.86  E-value=1.8  Score=41.07  Aligned_cols=123  Identities=14%  Similarity=0.137  Sum_probs=70.0

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh--------------------cc------CChHHHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP--------------------HI------KSATTFIQYAKAKEA   60 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~--------------------~~------~~~~l~~~~A~~~e~   60 (198)
                      ..++.|+..|...|++..|++.+..++++..+.+++.                    .+      .++.+....+..+-.
T Consensus       342 ~lh~raa~~~~~~g~~~~Al~~a~~a~d~~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~  421 (903)
T PRK04841        342 ELHRAAAEAWLAQGFPSEAIHHALAAGDAQLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQS  421 (903)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHCCCHHHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHH
Confidence            3456778888888888888888888888876544332                    11      123333444555567


Q ss_pred             cCCHHHHHHHHHHhcCH------------HHH-----HHHHhhccCCHHHHHHHHHhc----CCHH------HHHHHHHH
Q psy12373         61 MGSYRESVGAYERAEDY------------DNV-----VRVDLDHLNDIRHAVDIVKAK----KCTE------GAKRIADY  113 (198)
Q Consensus        61 ~g~~~~A~~~Y~ka~~~------------~~a-----v~l~~~~~~~~~~a~~l~~~~----~~~~------~~~~~A~~  113 (198)
                      .|++++|..++..+.+.            ...     -.++. ..|++++|....++.    +...      ....++..
T Consensus       422 ~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~  500 (903)
T PRK04841        422 QHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAI-NDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEV  500 (903)
T ss_pred             CCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHH
Confidence            77888887777654211            000     12233 457777777666532    1111      11234455


Q ss_pred             HHhcCCHHHHHHHHHHc
Q psy12373        114 CNKHGDFGAAIHFLILS  130 (198)
Q Consensus       114 ~~~~g~~~~Av~~y~~a  130 (198)
                      +...|++++|...+.++
T Consensus       501 ~~~~G~~~~A~~~~~~a  517 (903)
T PRK04841        501 HHCKGELARALAMMQQT  517 (903)
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            56677777766665443

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=94.76  E-value=1.2  Score=40.15  Aligned_cols=127  Identities=9%  Similarity=0.103  Sum_probs=85.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHH------HHcCCHHHHHHHHHHhcCHHHHHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAK------EAMGSYRESVGAYERAEDYDNVVRVD   84 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~------e~~g~~~~A~~~Y~ka~~~~~av~l~   84 (198)
                      +-..+|.+.+--..||.+....|-++++...++...-..++..+-..-      |.....+.|...|.+.|+..+||...
T Consensus       185 ~ivpfflkHNaE~dAiDlL~Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~a  264 (881)
T COG5110         185 EIVPFFLKHNAEFDAIDLLVEVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVGA  264 (881)
T ss_pred             HHhHHHHhcccchHHHHHHHHhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence            334566666767778888888888888777765433222222222211      44445788999999999999999999


Q ss_pred             hhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH----HHHHHHHHHcCChHHHHH
Q psy12373         85 LDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDF----GAAIHFLILSKCYQDAFN  138 (198)
Q Consensus        85 ~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~----~~Av~~y~~ag~~~~A~~  138 (198)
                      + ++++.+.+...++...+|..-++++-.+.+..-+    ++-++--...|...+-|+
T Consensus       265 i-Rl~~~~~i~e~~~a~~Dp~~kKQ~~YiLArq~~~~e~~dee~~dil~Ng~lsdhf~  321 (881)
T COG5110         265 I-RLQKSKEIIEYVRAIEDPDYKKQCLYILARQNLYYEASDEEEKDILSNGYLSDHFR  321 (881)
T ss_pred             H-hcccHHHHHHHHHhccChHHHHHHHHHHHhccCCcccCCHHHHHHhcCCcHHHHHH
Confidence            9 8999999999999998988877777666544322    122444444555554443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=94.74  E-value=0.7  Score=40.16  Aligned_cols=99  Identities=15%  Similarity=0.155  Sum_probs=58.9

Q ss_pred             HHHHHHHccCHHHHHhhhhccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHH
Q psy12373         25 AATCYIQLKNWTKIGQLLPHIK--SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHA   94 (198)
Q Consensus        25 Ai~~y~~~~~~~~a~~l~~~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a   94 (198)
                      .++++...+.++.+..++.++.  +++....+|+.+-..++-.+|++...++=.        ..-.++.++ ..++.+.|
T Consensus       175 Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl-~k~~~~lA  253 (395)
T PF09295_consen  175 LLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL-SKKKYELA  253 (395)
T ss_pred             HHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-hcCCHHHH
Confidence            3444445555555555555432  567777888888888888888888777642        122344456 56888888


Q ss_pred             HHHHHhcC--CHHHH---HHHHHHHHhcCCHHHHH
Q psy12373         95 VDIVKAKK--CTEGA---KRIADYCNKHGDFGAAI  124 (198)
Q Consensus        95 ~~l~~~~~--~~~~~---~~~A~~~~~~g~~~~Av  124 (198)
                      ..++++.-  .|..+   ..+|+.|...||++.|+
T Consensus       254 L~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~AL  288 (395)
T PF09295_consen  254 LEIAKKAVELSPSEFETWYQLAECYIQLGDFENAL  288 (395)
T ss_pred             HHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHH
Confidence            88887532  23333   23444444444444444

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3785|consensus

Probab=94.67  E-value=0.45  Score=40.76  Aligned_cols=117  Identities=19%  Similarity=0.250  Sum_probs=81.4

Q ss_pred             HHHHHHHHHcCC----------HHHHHHHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         10 RGKWTLYESAGN----------YEKAATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        10 ~~Aa~~y~~~g~----------~~~Ai~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .-|.+.|.-.|.          -+..+.+|.-..+|+.+...+.++.     +..+...+|+..-..|++.+|.++|.+.
T Consensus       340 KiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~i  419 (557)
T KOG3785|consen  340 KIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRI  419 (557)
T ss_pred             HHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhh
Confidence            345566655543          2445566777788998877776543     7778889999999999999999999998


Q ss_pred             cCHH---------HHHHHHhhccCCHHHHHHHHHhcCCHH-HH---HHHHHHHHhcCCHHHHHHHHHHcCCh
Q psy12373         75 EDYD---------NVVRVDLDHLNDIRHAVDIVKAKKCTE-GA---KRIADYCNKHGDFGAAIHFLILSKCY  133 (198)
Q Consensus        75 ~~~~---------~av~l~~~~~~~~~~a~~l~~~~~~~~-~~---~~~A~~~~~~g~~~~Av~~y~~ag~~  133 (198)
                      .+++         -..|+++ +.+.++-|..+.-+...+. .+   ..+|+-|-+      +-+||.-++.|
T Consensus       420 s~~~ikn~~~Y~s~LArCyi-~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk------~~eFyyaaKAF  484 (557)
T KOG3785|consen  420 SGPEIKNKILYKSMLARCYI-RNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYK------ANEFYYAAKAF  484 (557)
T ss_pred             cChhhhhhHHHHHHHHHHHH-hcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHH------HHHHHHHHHhh
Confidence            8764         3468888 8899999988876554433 22   246766653      44455544443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=94.63  E-value=0.3  Score=41.94  Aligned_cols=97  Identities=13%  Similarity=0.170  Sum_probs=64.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHc--cCHHH-HHhhhh--------------------ccCChHHHHHHHHHHHHcCCHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQL--KNWTK-IGQLLP--------------------HIKSATTFIQYAKAKEAMGSYRES   67 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~--~~~~~-a~~l~~--------------------~~~~~~l~~~~A~~~e~~g~~~~A   67 (198)
                      ..+..|+++|+.+.|.++-.++  .+|+. ..+++.                    +..+|.++..+|+.+-..+.|.+|
T Consensus       268 ~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA  347 (400)
T COG3071         268 AYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKA  347 (400)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHH
Confidence            4677888999999998887754  33332 333332                    223677777788888888888888


Q ss_pred             HHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         68 VGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        68 ~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .++++.+      +.                 .-++......+|..|.+.|+...|-+.+..+
T Consensus       348 ~~~leaA------l~-----------------~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~  387 (400)
T COG3071         348 SEALEAA------LK-----------------LRPSASDYAELADALDQLGEPEEAEQVRREA  387 (400)
T ss_pred             HHHHHHH------Hh-----------------cCCChhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence            8777755      11                 0133334456888899999988887766543

>KOG0553|consensus

Probab=94.46  E-value=0.15  Score=42.18  Aligned_cols=69  Identities=20%  Similarity=0.254  Sum_probs=47.2

Q ss_pred             chHHHHHHHHHHcCCHH--------HHHHHHHHccCHHHHHhhhhc---cC--ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNYE--------KAATCYIQLKNWTKIGQLLPH---IK--SATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~--------~Ai~~y~~~~~~~~a~~l~~~---~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      ++|++|...|.++=.++        .=...|.++|+++.|+.=+..   ++  -...+..+|..+-..|.+++|++.|.|
T Consensus        95 ~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykK  174 (304)
T KOG0553|consen   95 KDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKK  174 (304)
T ss_pred             hhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHh
Confidence            56667766666553322        112346677878777655542   33  345777889999999999999999999


Q ss_pred             hc
Q psy12373         74 AE   75 (198)
Q Consensus        74 a~   75 (198)
                      +-
T Consensus       175 aL  176 (304)
T KOG0553|consen  175 AL  176 (304)
T ss_pred             hh
Confidence            84

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=94.44  E-value=1.8  Score=35.19  Aligned_cols=87  Identities=18%  Similarity=0.174  Sum_probs=54.1

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-------HHHHHHHHhhccCCHHHHHHHHHh-----cCCHHHHHHHHHH
Q psy12373         46 KSATTFIQYAKAKEAMGSYRESVGAYERAED-------YDNVVRVDLDHLNDIRHAVDIVKA-----KKCTEGAKRIADY  113 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------~~~av~l~~~~~~~~~~a~~l~~~-----~~~~~~~~~~A~~  113 (198)
                      +++.++.-+|+-.-..|+|.+|+..+.++-.       ..+..-++++++|+.+.|-.--++     -.++...-.++-+
T Consensus        98 ~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms  177 (257)
T COG5010          98 KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMS  177 (257)
T ss_pred             ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHH
Confidence            3555666677777777777777777777642       134444455566776665432221     1234455567777


Q ss_pred             HHhcCCHHHHHHHHHHcCC
Q psy12373        114 CNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       114 ~~~~g~~~~Av~~y~~ag~  132 (198)
                      +.-.||++.|+.++..+-.
T Consensus       178 ~~L~gd~~~A~~lll~a~l  196 (257)
T COG5010         178 LLLRGDLEDAETLLLPAYL  196 (257)
T ss_pred             HHHcCCHHHHHHHHHHHHh
Confidence            8888888888887776644

>KOG0548|consensus

Probab=94.42  E-value=0.68  Score=41.26  Aligned_cols=76  Identities=16%  Similarity=0.197  Sum_probs=48.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhc--CCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q psy12373         54 YAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAK--KCTEG---AKRIADYCNKHGDFGAAIHFLI  128 (198)
Q Consensus        54 ~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~--~~~~~---~~~~A~~~~~~g~~~~Av~~y~  128 (198)
                      +|..+-..++++.|+++|.++-...+--++.. .++..+++.+.....  -+|+.   ...-++-+-+.|||..||..|.
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls-~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt  382 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPDLLS-KLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT  382 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH-HHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence            55677888999999999999754444444444 455556555544321  12222   2344666778889999988887


Q ss_pred             Hc
Q psy12373        129 LS  130 (198)
Q Consensus       129 ~a  130 (198)
                      +|
T Consensus       383 eA  384 (539)
T KOG0548|consen  383 EA  384 (539)
T ss_pred             HH
Confidence            74

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=94.40  E-value=0.21  Score=31.28  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=15.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373        103 CTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus       103 ~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                      +++....+|+.+.+.|++++|...+.+
T Consensus        24 ~~~~~~~la~~~~~~g~~~~A~~~l~~   50 (68)
T PF14559_consen   24 NPEARLLLAQCYLKQGQYDEAEELLER   50 (68)
T ss_dssp             SHHHHHHHHHHHHHTT-HHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345555667777666666666555544

...

>PRK15331 chaperone protein SicA; Provisional

Probab=94.33  E-value=0.3  Score=37.13  Aligned_cols=90  Identities=11%  Similarity=0.048  Sum_probs=54.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN   89 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~   89 (198)
                      .-|=.+|. .|+++.|..+|.-+-.+        ...++....-+|-.+...|+|+.|+.+|..+.      -+-.    
T Consensus        42 ~~Ay~~y~-~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~------~l~~----  102 (165)
T PRK15331         42 AHAYEFYN-QGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAF------TLLK----  102 (165)
T ss_pred             HHHHHHHH-CCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------Hccc----
Confidence            33434443 36666666666443221        22356667777888888888888888888772      1111    


Q ss_pred             CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                  .+|......|+-+...|+.++|...|..+
T Consensus       103 ------------~dp~p~f~agqC~l~l~~~~~A~~~f~~a  131 (165)
T PRK15331        103 ------------NDYRPVFFTGQCQLLMRKAAKARQCFELV  131 (165)
T ss_pred             ------------CCCCccchHHHHHHHhCCHHHHHHHHHHH
Confidence                        23344556677777778888877755443

>PRK04841 transcriptional regulator MalT; Provisional

Probab=94.26  E-value=2.8  Score=39.83  Aligned_cols=81  Identities=14%  Similarity=0.104  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHH----------------HHHHhhccCCHHHHHHHHHhc-------CCHH-
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNV----------------VRVDLDHLNDIRHAVDIVKAK-------KCTE-  105 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~a----------------v~l~~~~~~~~~~a~~l~~~~-------~~~~-  105 (198)
                      .+..+|..+...|++++|..++.++-+....                ..++. ..|++++|...+.+.       .... 
T Consensus       533 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~G~~~~A~~~~~~al~~~~~~~~~~~  611 (903)
T PRK04841        533 SLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLW-EWARLDEAEQCARKGLEVLSNYQPQQQ  611 (903)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHH-HhcCHHHHHHHHHHhHHhhhccCchHH
Confidence            3456688888899999998887775443111                12344 458888887666532       1111 


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373        106 --GAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus       106 --~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                        ....+|......|+++.|...+..+.
T Consensus       612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~  639 (903)
T PRK04841        612 LQCLAMLAKISLARGDLDNARRYLNRLE  639 (903)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence              12235667778888888887776663

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.23  E-value=0.16  Score=27.33  Aligned_cols=26  Identities=27%  Similarity=0.530  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .++..+|..+...|++++|+++|.++
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~a   27 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRA   27 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHH
Confidence            56788999999999999999999998

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.05  E-value=0.12  Score=30.01  Aligned_cols=27  Identities=22%  Similarity=0.337  Sum_probs=24.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      |.+...+|+.+...|++++|+++|.++
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~   27 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRA   27 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456788999999999999999999988

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.05  E-value=0.11  Score=28.86  Aligned_cols=22  Identities=18%  Similarity=0.436  Sum_probs=17.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHH
Q psy12373        108 KRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus       108 ~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                      ..+|+.+.+.|++++|+++|.+
T Consensus         3 ~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    3 NNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Confidence            4678888999999999998877

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.89  E-value=0.17  Score=42.06  Aligned_cols=45  Identities=20%  Similarity=0.214  Sum_probs=24.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHhcCHH---HHHHHHhhccCCHHHHHHHHHh
Q psy12373         55 AKAKEAMGSYRESVGAYERAEDYD---NVVRVDLDHLNDIRHAVDIVKA  100 (198)
Q Consensus        55 A~~~e~~g~~~~A~~~Y~ka~~~~---~av~l~~~~~~~~~~a~~l~~~  100 (198)
                      |..+-..|++++|++...+.+..+   -.|.+++ ..|++|-|.+..+.
T Consensus       109 A~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L-~~~R~dlA~k~l~~  156 (290)
T PF04733_consen  109 ATILFHEGDYEEALKLLHKGGSLELLALAVQILL-KMNRPDLAEKELKN  156 (290)
T ss_dssp             HHHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHccCcccHHHHHHHHHH-HcCCHHHHHHHHHH
Confidence            455555666666666666655443   2355555 55666666555543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3060|consensus

Probab=93.87  E-value=3.1  Score=34.10  Aligned_cols=28  Identities=32%  Similarity=0.317  Sum_probs=24.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ++....--|-.+|..|+|++|+++|...
T Consensus        85 S~RV~~lkam~lEa~~~~~~A~e~y~~l  112 (289)
T KOG3060|consen   85 SKRVGKLKAMLLEATGNYKEAIEYYESL  112 (289)
T ss_pred             ChhHHHHHHHHHHHhhchhhHHHHHHHH
Confidence            5666777799999999999999999875

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=93.74  E-value=0.33  Score=44.61  Aligned_cols=39  Identities=26%  Similarity=0.384  Sum_probs=33.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD   86 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~   86 (198)
                      ..+....|..++..|.+++|+.+|.-+|++..+|++...
T Consensus       414 ~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~d~vl~lln~  452 (613)
T PF04097_consen  414 REIIEQAAREAEERGRFEDAILLYHLAEEYDKVLSLLNR  452 (613)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHhhHHHHHHHHHH
Confidence            456667899999999999999999999999999999983

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PRK15331 chaperone protein SicA; Provisional

Probab=93.70  E-value=0.48  Score=36.02  Aligned_cols=87  Identities=8%  Similarity=-0.062  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLI  128 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~  128 (198)
                      +-++..|--+-..|++++|..+|.-.          + ..+-|+           ++-..-+|-.+...+++++|+.+|.
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L----------~-~~d~~n-----------~~Y~~GLaa~~Q~~k~y~~Ai~~Y~   95 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFL----------C-IYDFYN-----------PDYTMGLAAVCQLKKQFQKACDLYA   95 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHH----------H-HhCcCc-----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556788888999999999888653          2 112222           2334457777888899999999998


Q ss_pred             HcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        129 LSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       129 ~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .|..                      ++ ..+|.-++..|+.|...|+...|
T Consensus        96 ~A~~----------------------l~-~~dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         96 VAFT----------------------LL-KNDYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHH----------------------cc-cCCCCccchHHHHHHHhCCHHHH
Confidence            7765                      22 23445567777777777777777

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.62  E-value=2.1  Score=35.51  Aligned_cols=49  Identities=10%  Similarity=-0.020  Sum_probs=28.3

Q ss_pred             HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373         27 TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      .+|...|+++.|.+++....+.++..-.-..+-..+.++.|.+.+....
T Consensus       110 ~i~~~~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~  158 (290)
T PF04733_consen  110 TILFHEGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQ  158 (290)
T ss_dssp             HHHCCCCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444556666666666555555555445555666667777766666665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1130|consensus

Probab=93.58  E-value=0.62  Score=40.67  Aligned_cols=67  Identities=7%  Similarity=0.158  Sum_probs=45.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      .+..+..+|+-+--.|+++.|+++|.+.      +.+.+ .+|+-.         -....++.+++.|--..++.+||.+
T Consensus       234 eRRA~sNlgN~hiflg~fe~A~ehYK~t------l~LAi-elg~r~---------vEAQscYSLgNtytll~e~~kAI~Y  297 (639)
T KOG1130|consen  234 ERRAHSNLGNCHIFLGNFELAIEHYKLT------LNLAI-ELGNRT---------VEAQSCYSLGNTYTLLKEVQKAITY  297 (639)
T ss_pred             HHHhhcccchhhhhhcccHhHHHHHHHH------HHHHH-Hhcchh---------HHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3445567788888889999999999887      77777 545422         1123355667766666667777777


Q ss_pred             HHH
Q psy12373        127 LIL  129 (198)
Q Consensus       127 y~~  129 (198)
                      +.+
T Consensus       298 h~r  300 (639)
T KOG1130|consen  298 HQR  300 (639)
T ss_pred             HHH
Confidence            655

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=93.50  E-value=0.27  Score=26.31  Aligned_cols=26  Identities=27%  Similarity=0.580  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .++..+|..+...|++++|+++|.++
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a   27 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKA   27 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            46778999999999999999999998

...

>KOG2066|consensus

Probab=93.49  E-value=1.8  Score=40.44  Aligned_cols=67  Identities=21%  Similarity=0.292  Sum_probs=37.8

Q ss_pred             HHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHH
Q psy12373         58 KEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI  124 (198)
Q Consensus        58 ~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av  124 (198)
                      |...|-++|-+-+.-+.|+-.+|+.|.++.++++++|++.|++..+++.=..+-.+....-.+-.++
T Consensus       644 C~q~~~~~E~VYlLgrmGn~k~AL~lII~el~die~AIefvKeq~D~eLWe~LI~~~ldkPe~~~~l  710 (846)
T KOG2066|consen  644 CSQKNFYEELVYLLGRMGNAKEALKLIINELRDIEKAIEFVKEQDDSELWEDLINYSLDKPEFIKAL  710 (846)
T ss_pred             HHhhCcHHHHHHHHHhhcchHHHHHHHHHHhhCHHHHHHHHHhcCCHHHHHHHHHHhhcCcHHHHHH
Confidence            4444455555555566666666666666666666666666666666655444444444444444444

>KOG2168|consensus

Probab=93.49  E-value=0.67  Score=43.51  Aligned_cols=39  Identities=18%  Similarity=0.323  Sum_probs=35.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      ..++....|+.++..|.|+.||.+|..+|++..||.+..
T Consensus       621 ~~~i~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~lin  659 (835)
T KOG2168|consen  621 LQKIILEVASEADEDGLFEDAILLYHLAGDYDKALELIN  659 (835)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHH
Confidence            356777889999999999999999999999999999887

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=93.48  E-value=2.5  Score=40.58  Aligned_cols=126  Identities=13%  Similarity=0.016  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHH
Q psy12373         22 YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVD   96 (198)
Q Consensus        22 ~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~   96 (198)
                      ++..+..|...++++.+.+++..     .+...+++..|-.+...+++..|.-.        .++++.. ..++|.-...
T Consensus        34 ~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--------~~l~~~~-~~~~~~~ve~  104 (906)
T PRK14720         34 LDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--------NLIDSFS-QNLKWAIVEH  104 (906)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--------hhhhhcc-cccchhHHHH
Confidence            45666777777788877777652     22556777777777777776666544        3455555 4455643333


Q ss_pred             HHHh---cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHH
Q psy12373         97 IVKA---KKC-TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFE  172 (198)
Q Consensus        97 l~~~---~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e  172 (198)
                      ++..   ++. ..+..-+|..|.+.|+.++|...|.++=.                      + .+.++.+++++|-+|.
T Consensus       105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~----------------------~-D~~n~~aLNn~AY~~a  161 (906)
T PRK14720        105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVK----------------------A-DRDNPEIVKKLATSYE  161 (906)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHh----------------------c-CcccHHHHHHHHHHHH
Confidence            3321   222 22333456666666666655555443322                      1 2567888999999888


Q ss_pred             hCCChhhH
Q psy12373        173 EDKGVLTS  180 (198)
Q Consensus       173 ~~g~~~~A  180 (198)
                      .. +.++|
T Consensus       162 e~-dL~KA  168 (906)
T PRK14720        162 EE-DKEKA  168 (906)
T ss_pred             Hh-hHHHH
Confidence            88 88888

>KOG0624|consensus

Probab=93.28  E-value=4.2  Score=34.92  Aligned_cols=48  Identities=10%  Similarity=0.012  Sum_probs=34.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        122 AAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       122 ~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ---..|...|++.+|++.|.+         +  |. .+++.+++..-|..|.....|+.|
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~e---------v--L~~d~~dv~~l~dRAeA~l~dE~YD~A  360 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKE---------V--LDIDPDDVQVLCDRAEAYLGDEMYDDA  360 (504)
T ss_pred             eeeecccccCCHHHHHHHHHH---------H--HhcCchHHHHHHHHHHHHhhhHHHHHH
Confidence            345678888889999998843         3  33 234577888888888877778777

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=93.27  E-value=3.1  Score=39.47  Aligned_cols=129  Identities=15%  Similarity=0.168  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc--------------------c------CChHHHHHHHHHHHHc
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH--------------------I------KSATTFIQYAKAKEAM   61 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~--------------------~------~~~~l~~~~A~~~e~~   61 (198)
                      .+..|++.|...|.++.||+.-+.+++++.+..++.+                    +      +.|.+....|=...+.
T Consensus       349 lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~lP~~~l~~~P~Lvll~aW~~~s~  428 (894)
T COG2909         349 LHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLEQLEWQLFNGSELSLLLAWLKALPAELLASTPRLVLLQAWLLASQ  428 (894)
T ss_pred             HHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHHhhhhhhhcccchHHHHHHHHhCCHHHHhhCchHHHHHHHHHHHc
Confidence            4567888888888888888888888888887777652                    2      2556666667677788


Q ss_pred             CCHHHHHHHHHHhcCH-------------------HHHHHHHhhccCCHHHHHHHHHhc----CC----HHHHH--HHHH
Q psy12373         62 GSYRESVGAYERAEDY-------------------DNVVRVDLDHLNDIRHAVDIVKAK----KC----TEGAK--RIAD  112 (198)
Q Consensus        62 g~~~~A~~~Y~ka~~~-------------------~~av~l~~~~~~~~~~a~~l~~~~----~~----~~~~~--~~A~  112 (198)
                      +.+.+|..+-.+...+                   ...|.++   .|+++++.++++..    +.    +....  -++.
T Consensus       429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~---~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALN---RGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            8888887765544322                   2233333   37889998888742    21    11111  2355


Q ss_pred             HHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373        113 YCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK  145 (198)
Q Consensus       113 ~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~  145 (198)
                      ...-.|++++|.-+-.      +|-+++.+++.
T Consensus       506 a~~~~G~~~~Al~~~~------~a~~~a~~~~~  532 (894)
T COG2909         506 AAHIRGELTQALALMQ------QAEQMARQHDV  532 (894)
T ss_pred             HHHHhchHHHHHHHHH------HHHHHHHHccc
Confidence            5556677776655443      33445555544

>KOG0550|consensus

Probab=93.25  E-value=0.86  Score=39.64  Aligned_cols=83  Identities=16%  Similarity=0.171  Sum_probs=57.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCH------------HHHHHHHhhccCCHHHHHHHHHhcCCHHHH-----HHHHHHHH
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDY------------DNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-----KRIADYCN  115 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~------------~~av~l~~~~~~~~~~a~~l~~~~~~~~~~-----~~~A~~~~  115 (198)
                      .-|+..-+.|.+..|.++|..+=.+            -+-.-+.+ .+|+.++|+.-|.+.-+-+..     ..-|+-..
T Consensus       254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~-rLgrl~eaisdc~~Al~iD~syikall~ra~c~l  332 (486)
T KOG0550|consen  254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNI-RLGRLREAISDCNEALKIDSSYIKALLRRANCHL  332 (486)
T ss_pred             hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhc-ccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence            3488889999999999999987532            11122233 578999998877654332222     22366677


Q ss_pred             hcCCHHHHHHHHHHcCChHHH
Q psy12373        116 KHGDFGAAIHFLILSKCYQDA  136 (198)
Q Consensus       116 ~~g~~~~Av~~y~~ag~~~~A  136 (198)
                      ..++|++||+-|.+|.+.+.-
T Consensus       333 ~le~~e~AV~d~~~a~q~~~s  353 (486)
T KOG0550|consen  333 ALEKWEEAVEDYEKAMQLEKD  353 (486)
T ss_pred             HHHHHHHHHHHHHHHHhhccc
Confidence            889999999999998875443

>KOG2376|consensus

Probab=93.03  E-value=5.3  Score=36.36  Aligned_cols=152  Identities=10%  Similarity=0.003  Sum_probs=87.5

Q ss_pred             HHHHHccCHHHHHhhhhc----cC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHH
Q psy12373         27 TCYIQLKNWTKIGQLLPH----IK-SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRH   93 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~----~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~   93 (198)
                      .++...+.|++|...+.+    .+ ++..++..=-.+-..+.|++|.+.-.+-+-        +++|--.|  ++|..|+
T Consensus        20 n~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Y--rlnk~De   97 (652)
T KOG2376|consen   20 NRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEY--RLNKLDE   97 (652)
T ss_pred             HHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHH--HcccHHH
Confidence            355566667776555543    22 444444444445566678888754443331        23333333  5799999


Q ss_pred             HHHHHHhcCC--HHHHHHHHHHHHhcCCHHHHHHHHHHc-CC----hHHHHHHHHHcchhhHHhhhh---hhcCCCCHHH
Q psy12373         94 AVDIVKAKKC--TEGAKRIADYCNKHGDFGAAIHFLILS-KC----YQDAFNLSQQHKKLHEFGKFL---LEEDEPNPVE  163 (198)
Q Consensus        94 a~~l~~~~~~--~~~~~~~A~~~~~~g~~~~Av~~y~~a-g~----~~~A~~la~~~~~~~~~~~~~---~l~~~~~~~~  163 (198)
                      |.........  +.....-|++|-+.|+|++|+..|..- .+    +++=++.....-....-...+   ...+.++-+.
T Consensus        98 alk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel  177 (652)
T KOG2376|consen   98 ALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYEL  177 (652)
T ss_pred             HHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHH
Confidence            9887763322  223445699999999999999999875 22    222222221110000001011   1234667889


Q ss_pred             HHHHHHHHHhCCChhhH
Q psy12373        164 LKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       164 ~~~~A~~~e~~g~~~~A  180 (198)
                      +++.|..+.+.|+|.+|
T Consensus       178 ~yN~Ac~~i~~gky~qA  194 (652)
T KOG2376|consen  178 LYNTACILIENGKYNQA  194 (652)
T ss_pred             HHHHHHHHHhcccHHHH
Confidence            99999999999999888

>KOG0307|consensus

Probab=92.88  E-value=2.3  Score=41.01  Aligned_cols=132  Identities=11%  Similarity=0.071  Sum_probs=80.5

Q ss_pred             HcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHH-HHHHhcCCHHHHHHHHHHcCChHHHHH
Q psy12373         60 AMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIA-DYCNKHGDFGAAIHFLILSKCYQDAFN  138 (198)
Q Consensus        60 ~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A-~~~~~~g~~~~Av~~y~~ag~~~~A~~  138 (198)
                      ..++++..|.-=.-.||+.+||+.|+ ..+++-+|+=|+..+. .+...... +|+.+.+.-..-|-+-+..++|..-+.
T Consensus       486 ~~~d~d~~Is~alitgd~~~aV~~cl-~~~~~a~AliiA~~gg-~el~~~t~~~Y~~k~~~k~s~li~a~v~~d~~~~ve  563 (1049)
T KOG0307|consen  486 LDSDIDGLISEALITGDFKSAVELCL-EANKMADALIIAHAGG-TELLESTRDKYLAKSNSKLSRLIYAMVNRDLDDYVE  563 (1049)
T ss_pred             CCCcHHHHHHHHHHhccHHHHHHHHH-hhhHHHHHHHHHhcCC-HHHHHHHHHHHHHHhCChHHHHHHHHHhhhHHHHHh
Confidence            34567788877778899999999999 7788888887776543 33333333 455555554333333334444666665


Q ss_pred             HHHHcchhhHHhhhhhhcC-CCCHHHHHHHHHHHHhCCChhhH-----HhcCChhhHHhhh
Q psy12373        139 LSQQHKKLHEFGKFLLEED-EPNPVELKRLAIHFEEDKGVLTS-----FRVSQQSRAMPCS  193 (198)
Q Consensus       139 la~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~e~~g~~~~A-----~~ag~~~~Al~l~  193 (198)
                      .+.-..--+.+..|+++.+ +.-+++.-.++..+++.|++..+     +-+|..++...+-
T Consensus       564 ~~~~k~Wke~la~i~t~~~~~~~~elc~~Lg~rl~~~g~~~~~a~lcYi~agsv~k~v~~w  624 (1049)
T KOG0307|consen  564 TCEVKQWKETLAAICTYAQTDEFSELCDMLGDRLENAGDLTSAAILCYICAGSVDKLVEIW  624 (1049)
T ss_pred             hcchhhHHHHHHHHHHhcchhhHHHHHHHHHHHHhhccchhhhhhHHhhhccChhhhHHHH
Confidence            5543321223333333333 44566777788888888865554     7777777766553

>KOG2066|consensus

Probab=92.35  E-value=5  Score=37.65  Aligned_cols=31  Identities=16%  Similarity=0.140  Sum_probs=26.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY   77 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~   77 (198)
                      +..+...+|..+--.++|..|...|.++.+.
T Consensus       504 ~~~L~e~La~LYl~d~~Y~~Al~~ylklk~~  534 (846)
T KOG2066|consen  504 STALLEVLAHLYLYDNKYEKALPIYLKLQDK  534 (846)
T ss_pred             chhHHHHHHHHHHHccChHHHHHHHHhccCh
Confidence            4567777899999999999999999999875

>KOG2280|consensus

Probab=92.34  E-value=3.4  Score=38.51  Aligned_cols=145  Identities=11%  Similarity=0.107  Sum_probs=81.9

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhh-hccC----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHH-
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLL-PHIK----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNV-   80 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~-~~~~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~a-   80 (198)
                      ...+.|+..|.++......+++..+.-..-++.+-+ .+..    +-.+. .-=..+-..|+-..|.+.=....=+++= 
T Consensus       639 ~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~-dTv~~li~~g~~k~a~ql~~~FkipdKr~  717 (829)
T KOG2280|consen  639 PALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLH-DTVTTLILIGQNKRAEQLKSDFKIPDKRL  717 (829)
T ss_pred             hhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHH-HHHHHHHHccchHHHHHHHHhcCCcchhh
Confidence            455677777877766555555444322111111111 1100    11111 1112233456666666655444422111 


Q ss_pred             ----HHHHhhccCCHHHHHHHHHhcCCHHH-------H------HHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373         81 ----VRVDLDHLNDIRHAVDIVKAKKCTEG-------A------KRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH  143 (198)
Q Consensus        81 ----v~l~~~~~~~~~~a~~l~~~~~~~~~-------~------~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~  143 (198)
                          +..+. ..++|++..+.+++-++|-.       +      ....+|.-+.++..+=+.+|.+.|.+.+|+++|-++
T Consensus       718 ~wLk~~aLa-~~~kweeLekfAkskksPIGy~PFVe~c~~~~n~~EA~KYiprv~~l~ekv~ay~~~~~~~eAad~A~~~  796 (829)
T KOG2280|consen  718 WWLKLTALA-DIKKWEELEKFAKSKKSPIGYLPFVEACLKQGNKDEAKKYIPRVGGLQEKVKAYLRVGDVKEAADLAAEH  796 (829)
T ss_pred             HHHHHHHHH-hhhhHHHHHHHHhccCCCCCchhHHHHHHhcccHHHHhhhhhccCChHHHHHHHHHhccHHHHHHHHHHh
Confidence                33344 55788888888876543321       1      123455667777778899999999999999999999


Q ss_pred             chhhHHhhhh
Q psy12373        144 KKLHEFGKFL  153 (198)
Q Consensus       144 ~~~~~~~~~~  153 (198)
                      ..-..+.++.
T Consensus       797 rd~~~L~ev~  806 (829)
T KOG2280|consen  797 RDGAELSEVL  806 (829)
T ss_pred             cChHHHHHHH
Confidence            8877777764

>KOG2002|consensus

Probab=92.32  E-value=0.37  Score=45.74  Aligned_cols=80  Identities=15%  Similarity=0.269  Sum_probs=45.0

Q ss_pred             cCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHH
Q psy12373         33 KNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA  107 (198)
Q Consensus        33 ~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~  107 (198)
                      |+|..|..+..++.     ..+.+..+|..+...|+|..||++|+.+      ++...              .+.++++.
T Consensus       660 g~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~------lkkf~--------------~~~~~~vl  719 (1018)
T KOG2002|consen  660 GRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENC------LKKFY--------------KKNRSEVL  719 (1018)
T ss_pred             cCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHH------HHHhc--------------ccCCHHHH
Confidence            44555555554332     3455666777777777777777777766      22222              12344445


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373        108 KRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       108 ~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      ..+|+.+-..|++.+|.+...+|-+
T Consensus       720 ~~Lara~y~~~~~~eak~~ll~a~~  744 (1018)
T KOG2002|consen  720 HYLARAWYEAGKLQEAKEALLKARH  744 (1018)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            5566666666666666665555544

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.30  E-value=0.49  Score=26.28  Aligned_cols=31  Identities=26%  Similarity=0.378  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      ..+..+|..+...|++++|..+|.++      +.++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~   33 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEA------LEIRE   33 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHH------HHHH-
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHH------HHHHH
Confidence            45778999999999999999999998      77766

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=92.29  E-value=4.4  Score=31.54  Aligned_cols=61  Identities=26%  Similarity=0.393  Sum_probs=40.6

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .+|+.|...|.+ |++..|++.|.+..      ......+ .+....++|..+...|++.+|+..|.+-
T Consensus         7 ~lY~~a~~~~~~-g~y~~Ai~~f~~l~------~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~f   68 (203)
T PF13525_consen    7 ALYQKALEALQQ-GDYEEAIKLFEKLI------DRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERF   68 (203)
T ss_dssp             HHHHHHHHHHHC-T-HHHHHHHHHHHH------HH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHC-CCHHHHHHHHHHHH------HHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356666655554 88888888885542      1122222 4567788999999999999999988874

>KOG2168|consensus

Probab=92.20  E-value=0.79  Score=43.05  Aligned_cols=37  Identities=24%  Similarity=0.323  Sum_probs=32.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373        107 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH  143 (198)
Q Consensus       107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~  143 (198)
                      ...+|+-+...|.|+.||.+|..+|+|+.|+.+....
T Consensus       625 ~~~vA~~a~~~G~~~~sI~LY~lag~yd~al~link~  661 (835)
T KOG2168|consen  625 ILEVASEADEDGLFEDAILLYHLAGDYDKALELINKL  661 (835)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhhhHHHHHHHHH
Confidence            4468899999999999999999999999999987443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=92.11  E-value=2.6  Score=37.26  Aligned_cols=123  Identities=13%  Similarity=0.127  Sum_probs=86.3

Q ss_pred             CCHHHHHHHHHHccCHHHHHh----hhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhh
Q psy12373         20 GNYEKAATCYIQLKNWTKIGQ----LLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLD   86 (198)
Q Consensus        20 g~~~~Ai~~y~~~~~~~~a~~----l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~   86 (198)
                      +.|..|+.-|. .++++.+..    |+...+ ++-+..-.+..+-..|...+|++.|.++-+.        -.--++++ 
T Consensus       308 a~YG~A~~~~~-~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all-  385 (484)
T COG4783         308 AQYGRALQTYL-AGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALL-  385 (484)
T ss_pred             HHHHHHHHHHH-hcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH-
Confidence            34555555443 345554433    343444 5566666788999999999999999998642        23345566 


Q ss_pred             ccCCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCHHHHH----HHHHHcCChHHHHHHHHHcc
Q psy12373         87 HLNDIRHAVDIVKAK-----KCTEGAKRIADYCNKHGDFGAAI----HFLILSKCYQDAFNLSQQHK  144 (198)
Q Consensus        87 ~~~~~~~a~~l~~~~-----~~~~~~~~~A~~~~~~g~~~~Av----~~y~~ag~~~~A~~la~~~~  144 (198)
                      ..|++.+|+++....     .++..-..+|+.|...|+..+|.    +.|-.+|.|++|+..+....
T Consensus       386 ~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l~~A~  452 (484)
T COG4783         386 KGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFLMRAS  452 (484)
T ss_pred             hcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            789999999887642     23555667999999999987765    45678999999988886553

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=91.88  E-value=0.66  Score=29.33  Aligned_cols=26  Identities=19%  Similarity=0.017  Sum_probs=17.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        105 EGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       105 ~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ......|..+...|++.+|++.|.++
T Consensus        30 ~~~~~~a~~~~~~g~~~~A~~~l~~~   55 (73)
T PF13371_consen   30 ELWLQRARCLFQLGRYEEALEDLERA   55 (73)
T ss_pred             hhhHHHHHHHHHhccHHHHHHHHHHH
Confidence            33445788888888888887766543

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=91.69  E-value=1.2  Score=39.28  Aligned_cols=28  Identities=14%  Similarity=0.279  Sum_probs=25.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ++..+..+|..+...|+|++|+.+|.++
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rA  101 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETA  101 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5678889999999999999999999887

>KOG0543|consensus

Probab=91.52  E-value=1  Score=38.93  Aligned_cols=51  Identities=20%  Similarity=0.394  Sum_probs=39.8

Q ss_pred             HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         24 KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        24 ~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ...-||.+++.|..|.+.+.+     ..+...+++.|+.+...|+|+.|+..|.++
T Consensus       262 NlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka  317 (397)
T KOG0543|consen  262 NLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKA  317 (397)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence            345577777888887777653     237778889999999999999999888887

>KOG1064|consensus

Probab=91.47  E-value=1.5  Score=44.73  Aligned_cols=133  Identities=17%  Similarity=0.105  Sum_probs=86.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHH---Hhhhhc---------cC-------ChHHHHHHHHHHHHcCCHHHHHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKI---GQLLPH---------IK-------SATTFIQYAKAKEAMGSYRESVGAY   71 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a---~~l~~~---------~~-------~~~l~~~~A~~~e~~g~~~~A~~~Y   71 (198)
                      -|-..|.+..|+..|.-.|+-++.-.-+   -|+.+.         ++       -+.....-|=.+.....|+.|+-+|
T Consensus      1219 lAK~af~kn~dP~DaALfYLALkKk~Vl~gLfr~~~~hed~kmv~FfsnnF~eerWrkAAlKNAFvLLgKhRfe~AaaFF 1298 (2439)
T KOG1064|consen 1219 LAKAAFQKKRDPLDAALFYLALKKKQVLWGLFRLAKDHEDTKMVVFFSNNFTEERWRKAALKNAFVLLGKHRFEHAAAFF 1298 (2439)
T ss_pred             HHHHHHHhcCChhhhhHHHHHHHHHHHHHHHHHHhhccccchHHHHhhccccHHHHHHHHHhhHHHHhhhHHHHHHHHHH
Confidence            4556788899999999999877553322   222221         11       1222233344666778899999999


Q ss_pred             HHhcCHHHHHHHHhhccCCHHHHHHHHHhcCC-HH-HHHH-HHHH-H---HhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373         72 ERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC-TE-GAKR-IADY-C---NKHGDFGAAIHFLILSKCYQDAFNLSQQH  143 (198)
Q Consensus        72 ~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~-~~-~~~~-~A~~-~---~~~g~~~~Av~~y~~ag~~~~A~~la~~~  143 (198)
                      .-+|....||++|++++++.+=|+-|+|-... .+ .... +-++ +   ...+|+=.+--.|-.-++|..|+.-....
T Consensus      1299 LLagslkDAI~VC~kkl~DiQLALvI~RlYEgd~g~~~~~LL~~~vLp~~v~~~DpwLrSmayWiLkdy~rAl~tLl~~ 1377 (2439)
T KOG1064|consen 1299 LLAGSLKDAINVCCKKLNDIQLALVICRLYEGDGGPTYKELLNKYVLPIAVQHNDPWLRSMAYWILKDYTRALLTLLGQ 1377 (2439)
T ss_pred             hhcchHHHHHHHHHHhhhhhhhhheeeeeecCCCchHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999988885321 11 2112 2222 1   23566555666777777777776554333

>KOG1127|consensus

Probab=91.42  E-value=3.1  Score=40.10  Aligned_cols=52  Identities=10%  Similarity=0.109  Sum_probs=42.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA  100 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~  100 (198)
                      .+.+..+|.++...-+..-|-++|-+|=+.        ..+++.+. ..++|+.|..|+-.
T Consensus       492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtya-e~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYA-EESTWEEAFEICLR  551 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhh-ccccHHHHHHHHHH
Confidence            456677899988888999999999998643        56688999 78999999998653

>KOG4162|consensus

Probab=91.36  E-value=3  Score=38.92  Aligned_cols=111  Identities=19%  Similarity=0.179  Sum_probs=71.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVR   82 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~   82 (198)
                      -|+.+|.+.++.+.+--|...+...+        .-.+..++..|..++-.|++.+|.+.|.-|-..        ...-.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~  726 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAE  726 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHH
Confidence            34555555555555544443332222        114566777899999999999999999988632        33344


Q ss_pred             HHhhccCCHHHHHH--HHHh----c-CCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         83 VDLDHLNDIRHAVD--IVKA----K-KCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        83 l~~~~~~~~~~a~~--l~~~----~-~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ++. ..|+..-+..  +.+.    . .+++.=+.+|..+.+.||.++|++.|.-|
T Consensus       727 ~ll-e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa  780 (799)
T KOG4162|consen  727 LLL-ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAA  780 (799)
T ss_pred             HHH-HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHH
Confidence            555 6676655554  3221    1 24666678899999999999999988654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.23  E-value=0.35  Score=27.89  Aligned_cols=25  Identities=16%  Similarity=0.057  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        106 GAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       106 ~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ....+|+.+...|++++|++.|.++
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~   27 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRA   27 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3456777777777777777776553

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.16  E-value=2.7  Score=32.25  Aligned_cols=46  Identities=17%  Similarity=0.237  Sum_probs=33.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHcCChH-----------HHHHHHHHcchhhHHhhh
Q psy12373        107 AKRIADYCNKHGDFGAAIHFLILSKCYQ-----------DAFNLSQQHKKLHEFGKF  152 (198)
Q Consensus       107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~-----------~A~~la~~~~~~~~~~~~  152 (198)
                      ...+|.||.+.||++.|++.|.++..+.           .-++++...+.+..+...
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~   95 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKY   95 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            4468999999999999999999988742           236666666666544443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1174|consensus

Probab=90.85  E-value=2.9  Score=36.65  Aligned_cols=125  Identities=10%  Similarity=0.085  Sum_probs=84.7

Q ss_pred             chHHHHHHHHHHc--------CCHHHHHHHHHHccCHHHHHhhhhcc----C-ChHHHHHHH--HHHHHcCCHHHHHHHH
Q psy12373          7 TLDRGKWTLYESA--------GNYEKAATCYIQLKNWTKIGQLLPHI----K-SATTFIQYA--KAKEAMGSYRESVGAY   71 (198)
Q Consensus         7 ~~~~~Aa~~y~~~--------g~~~~Ai~~y~~~~~~~~a~~l~~~~----~-~~~l~~~~A--~~~e~~g~~~~A~~~Y   71 (198)
                      ++.++|+=.|..+        ..|+..+.+|.-.+.+..|.-++...    + +...+.-+|  -+++.-.--+.|.++|
T Consensus       348 ~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~  427 (564)
T KOG1174|consen  348 ERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFA  427 (564)
T ss_pred             cchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHH
Confidence            4555555555544        45678899999999999877666531    1 334444443  2344444558899999


Q ss_pred             HHhc----CHHHHH----HHHhhccCCHHHHHHHHHhc----CCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         72 ERAE----DYDNVV----RVDLDHLNDIRHAVDIVKAK----KCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        72 ~ka~----~~~~av----~l~~~~~~~~~~a~~l~~~~----~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      +++-    +|..||    +++. .-|...+++.+.+++    ++......+|++|...+.+.+|++.|..|=+
T Consensus       428 ek~L~~~P~Y~~AV~~~AEL~~-~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  428 EKSLKINPIYTPAVNLIAELCQ-VEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HhhhccCCccHHHHHHHHHHHH-hhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            9876    345554    4555 557788888888764    3334455789999999999999999988755

>PF12931 Sec16_C: Sec23-binding domain of Sec16; PDB: 3MZK_C

Probab=90.76  E-value=4.4  Score=33.49  Aligned_cols=116  Identities=11%  Similarity=0.066  Sum_probs=60.8

Q ss_pred             HHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHH-Hhc---CCH----HH--HHHHHHHcCChHHHH
Q psy12373         68 VGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYC-NKH---GDF----GA--AIHFLILSKCYQDAF  137 (198)
Q Consensus        68 ~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~-~~~---g~~----~~--Av~~y~~ag~~~~A~  137 (198)
                      +.-+...|+.+.||++|+ ..++|-.|+=|+... .++....+.+.| ...   ++.    ..  .+-+-+-+|++..++
T Consensus         2 I~~~Ll~G~~~~Av~~al-~~~~wa~ALlLAs~~-g~e~~~~v~~~y~~~~~~~~~~~~~~~~~L~~l~~v~~g~~~~~v   79 (284)
T PF12931_consen    2 IQQLLLVGNREEAVELAL-DNGLWAHALLLASSL-GPELWKKVVQEYFRREFSAGSPSSKITHLLRTLYQVFSGNSPEAV   79 (284)
T ss_dssp             HHHHHHTT-HHHHHHHHH-HTT-HHHHHHHHHTS--HHHHHHHHHHHHH--------THHHHHHHHHHHHHTTT-HHHHH
T ss_pred             HHHHHhCCCHHHHHHHHH-HCCChHHHHHHHHhc-CHHHHHHHHHHHHHHhccCCCCcchhhHHHHHHHHHHcCCcHHHH
Confidence            345778899999999999 779999999888764 444444443333 222   222    11  223345677777776


Q ss_pred             HHHHHc------------chhhHHhhhh-hhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCC
Q psy12373        138 NLSQQH------------KKLHEFGKFL-LEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQ  185 (198)
Q Consensus       138 ~la~~~------------~~~~~~~~~~-~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~  185 (198)
                      .-....            +.+..+..++ +=...........++..+.+.|+...|    +-+|.
T Consensus        80 ~~l~~~~~~~~~~~~~~~~~Wre~lA~il~N~~~~~~~~l~~LGd~L~~~g~~~aA~iCYllag~  144 (284)
T PF12931_consen   80 DELVPNSAAPPLEGEWDLDNWRETLAIILSNRTPEDSQALCALGDRLWQRGRVEAAHICYLLAGN  144 (284)
T ss_dssp             HHHHH-----HHHHHHHHHSHHHHHHHHHHTS---SS-TT--HHHHHHHTT-HHHHHHHHHHTT-
T ss_pred             HHhccccccccccccchhcCHHHHHHHHHhCCCcccHHHHHHHHHHHHhCCCcchhHHHHhHcCC
Confidence            543322            2343333332 112223345666799999999998888    66654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.52  E-value=0.68  Score=24.51  Aligned_cols=25  Identities=12%  Similarity=0.215  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        106 GAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       106 ~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ....+|..+...|++++|++.|.++
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~a   27 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKA   27 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            3456888899999999999988765

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG0307|consensus

Probab=90.43  E-value=12  Score=36.33  Aligned_cols=171  Identities=11%  Similarity=0.037  Sum_probs=100.5

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHH-HHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQ-YAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~-~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      +.++.....=.-.||+..||+..+..+.+..|.-++.. ...+++.. .-+++...++--.=+-+=.--.|+...|+.+-
T Consensus       488 ~d~d~~Is~alitgd~~~aV~~cl~~~~~a~AliiA~~-gg~el~~~t~~~Y~~k~~~k~s~li~a~v~~d~~~~ve~~~  566 (1049)
T KOG0307|consen  488 SDIDGLISEALITGDFKSAVELCLEANKMADALIIAHA-GGTELLESTRDKYLAKSNSKLSRLIYAMVNRDLDDYVETCE  566 (1049)
T ss_pred             CcHHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHHhc-CCHHHHHHHHHHHHHHhCChHHHHHHHHHhhhHHHHHhhcc
Confidence            34555555556678888888888887777776555433 33344433 34555555554222222233346777777774


Q ss_pred             hccCCHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCH-HHHHHHHHHcCChHHHHHHHHHcchh--------hHHhhh
Q psy12373         86 DHLNDIRHAVDIVKAKKC----TEGAKRIADYCNKHGDF-GAAIHFLILSKCYQDAFNLSQQHKKL--------HEFGKF  152 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~----~~~~~~~A~~~~~~g~~-~~Av~~y~~ag~~~~A~~la~~~~~~--------~~~~~~  152 (198)
                        ..+|.++...+-....    .+.+..++..++..|++ ..|+..|+-+|..++.+.+=.+....        +.++++
T Consensus       567 --~k~Wke~la~i~t~~~~~~~~elc~~Lg~rl~~~g~~~~~a~lcYi~agsv~k~v~~w~~~~~~~~~~~~y~~~~e~l  644 (1049)
T KOG0307|consen  567 --VKQWKETLAAICTYAQTDEFSELCDMLGDRLENAGDLTSAAILCYICAGSVDKLVEIWLKALDLELAPTSYQDLAEDL  644 (1049)
T ss_pred             --hhhHHHHHHHHHHhcchhhHHHHHHHHHHHHhhccchhhhhhHHhhhccChhhhHHHHHHhcccccchHHHHHHHHHH
Confidence              3678887665554433    22344788899999964 57888999999988876653322211        111222


Q ss_pred             hh----h------c--CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        153 LL----E------E--DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       153 ~~----l------~--~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.    +      .  ..+....+...|..+-.+|.+..|
T Consensus       645 ~~~~~~l~~~~~~~~~s~~l~~~~~~yanllasQG~~~~A  684 (1049)
T KOG0307|consen  645 MELTLKLAQFSANKTYSAGLAKKFSEYANLLASQGALAAA  684 (1049)
T ss_pred             HHHHhhhhhcccCccccHHHHHHHHHHHHHHHhcChHHHH
Confidence            11    1      1  122345566667777788888777

>KOG2005|consensus

Probab=90.33  E-value=2.6  Score=38.90  Aligned_cols=107  Identities=11%  Similarity=0.104  Sum_probs=73.4

Q ss_pred             HHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHH---HHHHHH---HhcCCHHHHHHHHHHcCChHHHHHH
Q psy12373         66 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAK---RIADYC---NKHGDFGAAIHFLILSKCYQDAFNL  139 (198)
Q Consensus        66 ~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~---~~A~~~---~~~g~~~~Av~~y~~ag~~~~A~~l  139 (198)
                      +-+.++.+-+.-..||+++. ..+..|.....+.++.-..++.   .++.++   +..--.+-|...|.|-+++.+|+++
T Consensus       183 ~iV~f~mkHNAE~eAiDlL~-Eve~id~l~~~Vd~~n~~RvclYl~sc~~~lP~Pdd~~ll~~a~~IYlKf~~~~~al~~  261 (878)
T KOG2005|consen  183 EIVPFHMKHNAEFEAIDLLM-EVEGIDLLLDYVDEHNYQRVCLYLTSCVPLLPGPDDVALLRTALKIYLKFNEYPRALVG  261 (878)
T ss_pred             HHHHHHHhccchhHHHHHHH-HhhhHhHHHHHhhhhhHHHHHHHHHHHhhcCCCchhhHHHHHHHHHHHHHHHhHHHHHH
Confidence            34557777777788999999 7788998888887765443332   234443   3333457899999999999999999


Q ss_pred             HHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCC
Q psy12373        140 SQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDK  175 (198)
Q Consensus       140 a~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g  175 (198)
                      |...+.++.+.++.  ....+|....+++=-+-.+|
T Consensus       262 ai~l~~~~~v~~vf--~s~~D~~~kKQ~~ymLaR~~  295 (878)
T KOG2005|consen  262 AIRLDDMKEVKEVF--TSCTDPLLKKQMAYMLARHG  295 (878)
T ss_pred             HHhcCcHHHHHHHH--HhccCHHHHHHHHHHHHhcC
Confidence            99998887666663  33445555555554444444

>COG5110 RPN1 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=90.23  E-value=2.5  Score=38.27  Aligned_cols=109  Identities=11%  Similarity=0.075  Sum_probs=72.3

Q ss_pred             HHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHH------HhcCCHHHHHHHHHHcCChHHHHHH
Q psy12373         66 ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYC------NKHGDFGAAIHFLILSKCYQDAFNL  139 (198)
Q Consensus        66 ~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~------~~~g~~~~Av~~y~~ag~~~~A~~l  139 (198)
                      +-+-+|.+-+--..||++++ ..|-.++....+..++-..++..+-..-      +.....+.|...|.+-|+...|+.+
T Consensus       185 ~ivpfflkHNaE~dAiDlL~-Evg~Iekv~~fVd~~n~~RvclYl~~cv~llp~pedVa~l~ta~~IYlk~~~lt~av~~  263 (881)
T COG5110         185 EIVPFFLKHNAEFDAIDLLV-EVGGIEKVLDFVDTHNYNRVCLYLEDCVPLLPPPEDVALLETALKIYLKMGDLTRAVVG  263 (881)
T ss_pred             HHhHHHHhcccchHHHHHHH-HhcchhhhhhhhcccchhHHHHHHHHhhccCCChHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            44567888888888999998 7788888888877665333322211111      2333446788889999999999888


Q ss_pred             HHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCCh
Q psy12373        140 SQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGV  177 (198)
Q Consensus       140 a~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~  177 (198)
                      +.+.++.+.+.+.  .....+|....+++-.+..++-|
T Consensus       264 aiRl~~~~~i~e~--~~a~~Dp~~kKQ~~YiLArq~~~  299 (881)
T COG5110         264 AIRLQKSKEIIEY--VRAIEDPDYKKQCLYILARQNLY  299 (881)
T ss_pred             HHhcccHHHHHHH--HHhccChHHHHHHHHHHHhccCC
Confidence            8888877555554  34455677777766655555444

>KOG2034|consensus

Probab=89.85  E-value=5.5  Score=37.83  Aligned_cols=81  Identities=19%  Similarity=0.168  Sum_probs=50.6

Q ss_pred             cccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH-HHHH
Q psy12373          4 GALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD-NVVR   82 (198)
Q Consensus         4 ~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~-~av~   82 (198)
                      +-.+.-+..-+.|..-|++++|.++-...   -++        -...+...|.++-..+.|..|+++|-+.-.+- +++=
T Consensus       356 ~vndE~R~vWk~yLd~g~y~kAL~~ar~~---p~~--------le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FEEVaL  424 (911)
T KOG2034|consen  356 GVNDEARDVWKTYLDKGEFDKALEIARTR---PDA--------LETVLLKQADFLFQDKEYLRAAEIYAETLSSFEEVAL  424 (911)
T ss_pred             eeccchHHHHHHHHhcchHHHHHHhccCC---HHH--------HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHHHHHH
Confidence            33455666777777777777776654322   010        12456678899999999999999999986543 3333


Q ss_pred             HHhhccCCHHHHHH
Q psy12373         83 VDLDHLNDIRHAVD   96 (198)
Q Consensus        83 l~~~~~~~~~~a~~   96 (198)
                      =.+ .+++.+....
T Consensus       425 KFl-~~~~~~~L~~  437 (911)
T KOG2034|consen  425 KFL-EINQERALRT  437 (911)
T ss_pred             HHH-hcCCHHHHHH
Confidence            333 5556554333

>KOG4121|consensus

Probab=89.58  E-value=6.6  Score=37.89  Aligned_cols=110  Identities=16%  Similarity=0.175  Sum_probs=64.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH-HHHHHHHHHcC
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDF-GAAIHFLILSK  131 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~-~~Av~~y~~ag  131 (198)
                      .|=+.+-+.|.++.|++.=+|=.|++..|.+|- ++.+-++..+.-....         .+.   ..| .-+.+.|++-|
T Consensus       777 dwlq~L~~vg~~e~Ai~iAEKY~DfqsLV~lcd-qld~kdrLq~y~~~~~---------e~~---~eFs~~lf~y~ve~~  843 (1128)
T KOG4121|consen  777 DWLQVLCKVGQYEQAIQIAEKYKDFQSLVQLCD-QLDQKDRLQDYETFFN---------EYP---KEFSFFLFEYLVEHG  843 (1128)
T ss_pred             HHHHHHHhcchHHHHHHHHHHhhhHHHHHHHHH-hhCchhHHHHHHHHHH---------hhh---HHHHHHHHHHHHhhc
Confidence            466678888999999998888888888888887 6555453332222111         110   001 12333333333


Q ss_pred             ChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhhh
Q psy12373        132 CYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSSG  195 (198)
Q Consensus       132 ~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~~  195 (198)
                      ++                .++  +  ...+..+-.++++|+++.-..-+    +.-|+|++|.+.+++
T Consensus       844 k~----------------~eL--l--~~f~~~~s~L~qFf~~~d~~~lsWi~ei~nGdy~rAs~~L~~  891 (1128)
T KOG4121|consen  844 KL----------------GEL--L--FRFPQQHSVLIQFFQERDYGHLSWIQEILNGDYERASNTLLN  891 (1128)
T ss_pred             hH----------------HHH--H--hcchhhHHHHHHHHhhccccccHHHHHHhcCcHHHHHHHHHH
Confidence            32                222  1  23556666788888774333334    888888888876653

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=89.43  E-value=8.7  Score=30.27  Aligned_cols=77  Identities=16%  Similarity=0.160  Sum_probs=48.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH----------HHHHHHhhccCCHHH---HHHHHH-hcCCHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYD----------NVVRVDLDHLNDIRH---AVDIVK-AKKCTEGAKRIAD  112 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~----------~av~l~~~~~~~~~~---a~~l~~-~~~~~~~~~~~A~  112 (198)
                      |+.++.-+|+..-..+++..|....++.+.+.          ---|.+- ..|...+   +++.+- -.|.++..+.++.
T Consensus       123 d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~la-a~g~~a~Aesafe~a~~~ypg~~ar~~Y~e  201 (251)
T COG4700         123 DAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLA-AQGKYADAESAFEVAISYYPGPQARIYYAE  201 (251)
T ss_pred             CHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHH-hcCCchhHHHHHHHHHHhCCCHHHHHHHHH
Confidence            66677777777777777777777666665431          2233333 4455443   334433 2466777888999


Q ss_pred             HHHhcCCHHHHH
Q psy12373        113 YCNKHGDFGAAI  124 (198)
Q Consensus       113 ~~~~~g~~~~Av  124 (198)
                      ++.++|..++|-
T Consensus       202 ~La~qgr~~ea~  213 (251)
T COG4700         202 MLAKQGRLREAN  213 (251)
T ss_pred             HHHHhcchhHHH
Confidence            999999776653

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=89.19  E-value=1.9  Score=31.31  Aligned_cols=28  Identities=25%  Similarity=0.350  Sum_probs=14.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +..++..+-+.+...|+..+|++.|.+.
T Consensus        95 ~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   95 DEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             -HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            4445555555555666666666665555

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1125|consensus

Probab=89.13  E-value=0.68  Score=41.59  Aligned_cols=64  Identities=11%  Similarity=0.033  Sum_probs=43.7

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCHHHHH
Q psy12373         46 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-KRIADYCNKHGDFGAAI  124 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~-~~~A~~~~~~g~~~~Av  124 (198)
                      .|+++..-+|-.|-..|+|+.|++||..|      ++  +    ++.           -... -.++-.+....+..+||
T Consensus       428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~A------L~--v----~Pn-----------d~~lWNRLGAtLAN~~~s~EAI  484 (579)
T KOG1125|consen  428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAA------LQ--V----KPN-----------DYLLWNRLGATLANGNRSEEAI  484 (579)
T ss_pred             CChhHHhhhHHHHhcchHHHHHHHHHHHH------Hh--c----CCc-----------hHHHHHHhhHHhcCCcccHHHH
Confidence            47788888888888888888888888776      21  1    111           1111 13566677777889999


Q ss_pred             HHHHHcCC
Q psy12373        125 HFLILSKC  132 (198)
Q Consensus       125 ~~y~~ag~  132 (198)
                      ..|.+|-+
T Consensus       485 sAY~rALq  492 (579)
T KOG1125|consen  485 SAYNRALQ  492 (579)
T ss_pred             HHHHHHHh
Confidence            99998755

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=88.79  E-value=6.4  Score=34.99  Aligned_cols=59  Identities=14%  Similarity=0.113  Sum_probs=35.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .++++...|+++.||++|.++-.-..-.   +.+. .-.+..+|-.+...++|++|.++|.+.
T Consensus       273 ~gR~~~~~g~~~~Ai~~~~~a~~~q~~~---~Ql~-~l~~~El~w~~~~~~~w~~A~~~f~~L  331 (468)
T PF10300_consen  273 EGRLERLKGNLEEAIESFERAIESQSEW---KQLH-HLCYFELAWCHMFQHDWEEAAEYFLRL  331 (468)
T ss_pred             HHHHHHHhcCHHHHHHHHHHhccchhhH---HhHH-HHHHHHHHHHHHHHchHHHHHHHHHHH
Confidence            5677777888888888887543211110   0111 122335566677777888887777665

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2280|consensus

Probab=88.48  E-value=2.4  Score=39.53  Aligned_cols=112  Identities=13%  Similarity=0.047  Sum_probs=59.6

Q ss_pred             HHHHHHHccCHHHHHhhhh--ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---HHHHHHHHhhccCCHHHHHHHHH
Q psy12373         25 AATCYIQLKNWTKIGQLLP--HIKSATTFIQYAKAKEAMGSYRESVGAYERAED---YDNVVRVDLDHLNDIRHAVDIVK   99 (198)
Q Consensus        25 Ai~~y~~~~~~~~a~~l~~--~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---~~~av~l~~~~~~~~~~a~~l~~   99 (198)
                      -+.-.+..|+-.+|.++..  +++++.++-.-...+.+.++|++=.++=..-..   |.=-|..|+ ..++.++|.+.+.
T Consensus       690 Tv~~li~~g~~k~a~ql~~~FkipdKr~~wLk~~aLa~~~kweeLekfAkskksPIGy~PFVe~c~-~~~n~~EA~KYip  768 (829)
T KOG2280|consen  690 TVTTLILIGQNKRAEQLKSDFKIPDKRLWWLKLTALADIKKWEELEKFAKSKKSPIGYLPFVEACL-KQGNKDEAKKYIP  768 (829)
T ss_pred             HHHHHHHccchHHHHHHHHhcCCcchhhHHHHHHHHHhhhhHHHHHHHHhccCCCCCchhHHHHHH-hcccHHHHhhhhh
Confidence            3444455566666666665  344555554445666666666654443333221   344566666 5566666666554


Q ss_pred             hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373        100 AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLS  140 (198)
Q Consensus       100 ~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la  140 (198)
                      +.+...   .-..++...|++.+|+++=.+.++-+.=..+.
T Consensus       769 rv~~l~---ekv~ay~~~~~~~eAad~A~~~rd~~~L~ev~  806 (829)
T KOG2280|consen  769 RVGGLQ---EKVKAYLRVGDVKEAADLAAEHRDGAELSEVL  806 (829)
T ss_pred             ccCChH---HHHHHHHHhccHHHHHHHHHHhcChHHHHHHH
Confidence            433222   22344555566666666666666655554444

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=88.47  E-value=0.96  Score=24.70  Aligned_cols=26  Identities=19%  Similarity=0.330  Sum_probs=22.4

Q ss_pred             ccCChHHHHHHHHHHHHcCCHHHHHH
Q psy12373         44 HIKSATTFIQYAKAKEAMGSYRESVG   69 (198)
Q Consensus        44 ~~~~~~l~~~~A~~~e~~g~~~~A~~   69 (198)
                      ..+++..+..+|..+...|++++|++
T Consensus         9 ~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    9 NPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            44588999999999999999999863

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=88.27  E-value=9.7  Score=29.06  Aligned_cols=64  Identities=20%  Similarity=0.285  Sum_probs=47.1

Q ss_pred             HHHHhcC-CHHHHHHHHHHcCChHHHHHHHHHcchhhHH--hhhhh-hcCCCCHHHHHHHHHHHHhCC
Q psy12373        112 DYCNKHG-DFGAAIHFLILSKCYQDAFNLSQQHKKLHEF--GKFLL-EEDEPNPVELKRLAIHFEEDK  175 (198)
Q Consensus       112 ~~~~~~g-~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~--~~~~~-l~~~~~~~~~~~~A~~~e~~g  175 (198)
                      ..+.+.+ .++.-++.+..-|++.+|++.+++.+..+.+  ...+. ...+.++..+..+=++|+..+
T Consensus        83 DMLkRL~~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   83 DMLKRLGTAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             HHHHHhhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            4567778 8899999999999999999999885433211  11111 245678899999999998755

>KOG1174|consensus

Probab=88.24  E-value=18  Score=31.99  Aligned_cols=118  Identities=13%  Similarity=0.097  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHH-------
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRI-------  110 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~-------  110 (198)
                      +..=|+.+-..|..++|+-+|..|..        |+..|..|+ -.|.+.+|.-+++..    + +......+       
T Consensus       337 lilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYL-A~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~  415 (564)
T KOG1174|consen  337 LILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYL-AQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP  415 (564)
T ss_pred             HHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHH-hhchHHHHHHHHHHHHHHhhcchhhhhhhcceeecc
Confidence            33447778888888999888877763        567888888 678888888777642    1 12222223       


Q ss_pred             -------HHHHHh-----cCCHHHHH----HHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhC
Q psy12373        111 -------ADYCNK-----HGDFGAAI----HFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEED  174 (198)
Q Consensus       111 -------A~~~~~-----~g~~~~Av----~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~  174 (198)
                             |+.|..     .-+|..||    ++..+-|.+.+++.|...+           |..-++..++..++++|-..
T Consensus       416 dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~-----------L~~~~D~~LH~~Lgd~~~A~  484 (564)
T KOG1174|consen  416 DPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKH-----------LIIFPDVNLHNHLGDIMRAQ  484 (564)
T ss_pred             CchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHH-----------HhhccccHHHHHHHHHHHHh
Confidence                   222211     12333332    3444555555555555444           34456678899999999888


Q ss_pred             CChhhH
Q psy12373        175 KGVLTS  180 (198)
Q Consensus       175 g~~~~A  180 (198)
                      +.+.+|
T Consensus       485 Ne~Q~a  490 (564)
T KOG1174|consen  485 NEPQKA  490 (564)
T ss_pred             hhHHHH
Confidence            888877

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=88.18  E-value=11  Score=29.66  Aligned_cols=58  Identities=28%  Similarity=0.283  Sum_probs=41.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        103 CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       103 ~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +++....+|.||. +-|.++++.+|.++=.      +..             -+...+|+++..+|..|.+.|+++.|
T Consensus       140 t~elq~aLAtyY~-krD~~Kt~~ll~~~L~------l~~-------------~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  140 TAELQYALATYYT-KRDPEKTIQLLLRALE------LSN-------------PDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CHHHHHHHHHHHH-ccCHHHHHHHHHHHHH------hcC-------------CCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            4556667888887 5567777777765321      110             02255799999999999999999988

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=88.10  E-value=6.1  Score=29.31  Aligned_cols=113  Identities=12%  Similarity=0.122  Sum_probs=66.3

Q ss_pred             HHcCCHHHHHHHHHH---ccCHHHH----HhhhhccC---ChHHHHHHHHHHH--HcCCHHHHHHHHHHhcCHHH----H
Q psy12373         17 ESAGNYEKAATCYIQ---LKNWTKI----GQLLPHIK---SATTFIQYAKAKE--AMGSYRESVGAYERAEDYDN----V   80 (198)
Q Consensus        17 ~~~g~~~~Ai~~y~~---~~~~~~a----~~l~~~~~---~~~l~~~~A~~~e--~~g~~~~A~~~Y~ka~~~~~----a   80 (198)
                      .-.|..++-+++..+   +.+...+    ..+++.++   .-..+..+|+.|.  .-|+...-+.+|.+.|-...    |
T Consensus        13 ildG~V~qGveii~k~v~Ssni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~NlKrVi~C~~~~n~~se~vD~A   92 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNSSNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCGNLKRVIECYAKRNKLSEYVDLA   92 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHHS-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S-THHHHHHHHHTT---HHHHHH
T ss_pred             HHhchHHHHHHHHHHHcCcCCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhcchHHHHHHHHHhcchHHHHHHH
Confidence            344777777776653   3333332    33333333   2233344555544  44778899999999997654    4


Q ss_pred             HHHHhhccCCHHHHHHHHHhc-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         81 VRVDLDHLNDIRHAVDIVKAK-----KCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        81 v~l~~~~~~~~~~a~~l~~~~-----~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +...+ ..|.-|..-++.+..     ++|.....+|..|.+.|+..++-++..+|
T Consensus        93 Ld~lv-~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~A  146 (161)
T PF09205_consen   93 LDILV-KQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEA  146 (161)
T ss_dssp             HHHHH-HTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHH-HhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            55555 568888888887764     46777778999999999999988887664

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG4340|consensus

Probab=87.71  E-value=7.6  Score=32.80  Aligned_cols=84  Identities=11%  Similarity=0.036  Sum_probs=57.0

Q ss_pred             HcCCHHHHHHHHHHccCHHHHHhhhhcc----C-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------HHHHHH
Q psy12373         18 SAGNYEKAATCYIQLKNWTKIGQLLPHI----K-SATTFIQYAKAKEAMGSYRESVGAYERAEDY---------DNVVRV   83 (198)
Q Consensus        18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~~~----~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---------~~av~l   83 (198)
                      +.|+++..+--.++-..|..+.+++...    + +..-+..+|--+....+|..|.+||++.+..         -.|-.+
T Consensus         9 ~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen    9 PEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSL   88 (459)
T ss_pred             CCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHH
Confidence            4466666666667777888888887532    2 5566777888888888999999999998742         122233


Q ss_pred             HhhccCCHHHHHHHHHhcCC
Q psy12373         84 DLDHLNDIRHAVDIVKAKKC  103 (198)
Q Consensus        84 ~~~~~~~~~~a~~l~~~~~~  103 (198)
                      |  +.+.+-+|.+++....+
T Consensus        89 Y--~A~i~ADALrV~~~~~D  106 (459)
T KOG4340|consen   89 Y--KACIYADALRVAFLLLD  106 (459)
T ss_pred             H--HhcccHHHHHHHHHhcC
Confidence            3  24566777777776554

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.58  E-value=1.5  Score=23.33  Aligned_cols=24  Identities=13%  Similarity=0.260  Sum_probs=18.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        107 AKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       107 ~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ...+|..+...|++++|++.|.++
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~a   27 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRA   27 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHH
Confidence            456788888999999999988775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=87.44  E-value=1  Score=23.57  Aligned_cols=25  Identities=20%  Similarity=0.485  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .+.++|..+...|++++|++.|.+.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~   26 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRL   26 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHH
Confidence            4567888888888999998888775

>KOG2300|consensus

Probab=87.33  E-value=11  Score=33.72  Aligned_cols=120  Identities=16%  Similarity=0.182  Sum_probs=72.7

Q ss_pred             HcCCHHHHHHHHHHccCHHHH--HhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH-----------HH
Q psy12373         18 SAGNYEKAATCYIQLKNWTKI--GQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR-----------VD   84 (198)
Q Consensus        18 ~~g~~~~Ai~~y~~~~~~~~a--~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~-----------l~   84 (198)
                      -.|++.+|++-..+..+|...  .+++-+-..+.++.-+|.++.+.|.++.|...|..|-...+-++           .|
T Consensus       335 v~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~Y  414 (629)
T KOG2300|consen  335 VRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISY  414 (629)
T ss_pred             HhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHH
Confidence            357788888777777777653  22233445678888999999999999999999998865433222           34


Q ss_pred             hhccCCHHHHHHHHHhcCCH------HH-----H-HHHHHHHHhcCCHHHHHHHHHHcCChHHHHH
Q psy12373         85 LDHLNDIRHAVDIVKAKKCT------EG-----A-KRIADYCNKHGDFGAAIHFLILSKCYQDAFN  138 (198)
Q Consensus        85 ~~~~~~~~~a~~l~~~~~~~------~~-----~-~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~  138 (198)
                      + +.++.++..++....+.+      ..     + +-.|-+.-.++++.+|-.+.++-=+-..|..
T Consensus       415 L-~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed  479 (629)
T KOG2300|consen  415 L-RIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAED  479 (629)
T ss_pred             H-HhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhh
Confidence            4 455656555555432211      11     1 1123333456777777666665544444433

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=87.27  E-value=7.4  Score=30.23  Aligned_cols=132  Identities=11%  Similarity=-0.020  Sum_probs=62.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCHHHHHHHHH----hcCCHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDIRHAVDIVK----AKKCTEGAKRIA  111 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~~~a~~l~~----~~~~~~~~~~~A  111 (198)
                      ++..++..|..+-..|+|.+|++.|.+..+-           -..+..+. ..|+++.|.....    .+|..... ..|
T Consensus         4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y-~~~~y~~A~~~~~~fi~~yP~~~~~-~~A   81 (203)
T PF13525_consen    4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYY-KQGDYEEAIAAYERFIKLYPNSPKA-DYA   81 (203)
T ss_dssp             -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHH-HTT-HHHHHHHHHHHHHH-TT-TTH-HHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHCCCCcch-hhH
Confidence            4566778888899999999999999887531           23344444 5677777765443    34432211 112


Q ss_pred             HHHHhcCCHHHHHHH---HHHcCChHHHHHHHH----HcchhhHHhhhh-hhc--CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        112 DYCNKHGDFGAAIHF---LILSKCYQDAFNLSQ----QHKKLHEFGKFL-LEE--DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       112 ~~~~~~g~~~~Av~~---y~~ag~~~~A~~la~----~~~~~~~~~~~~-~l~--~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++...-.+...-..   ....+...+|+....    ..+......++- .|.  .....+--+.+|++|.+.|.|.-|
T Consensus        82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA  160 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAA  160 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHH
T ss_pred             HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHH
Confidence            222111111122222   344444555544432    233322211111 000  112233456688999999998877

>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function

Probab=87.14  E-value=15  Score=29.98  Aligned_cols=39  Identities=15%  Similarity=0.004  Sum_probs=29.6

Q ss_pred             hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHH
Q psy12373        100 AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFN  138 (198)
Q Consensus       100 ~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~  138 (198)
                      ..++|+....+|+.|-+.|++..|..+|+.+++.+....
T Consensus        86 ~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~  124 (260)
T PF04190_consen   86 KFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAY  124 (260)
T ss_dssp             TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHH
Confidence            345677888899999999999999999999988766654

; PDB: 3LKU_E 2WPV_G.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=86.86  E-value=16  Score=29.90  Aligned_cols=100  Identities=17%  Similarity=0.193  Sum_probs=68.8

Q ss_pred             HHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------HHHHHHHhhccCCHHH
Q psy12373         28 CYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY---------DNVVRVDLDHLNDIRH   93 (198)
Q Consensus        28 ~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---------~~av~l~~~~~~~~~~   93 (198)
                      .-+..|+|..|...+.+     .++..++.-+|-.+...|++++|-..|.++-+.         .-++-.++  .|+.++
T Consensus       109 ~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L--~gd~~~  186 (257)
T COG5010         109 NQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLL--RGDLED  186 (257)
T ss_pred             HHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHH--cCCHHH
Confidence            33455666665555542     348889999999999999999999999988654         22344444  489999


Q ss_pred             HHHHHHh---cC--CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         94 AVDIVKA---KK--CTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus        94 a~~l~~~---~~--~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                      |..+...   .+  ++.+...+|......|+++.|-..=..
T Consensus       187 A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~  227 (257)
T COG5010         187 AETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAVQ  227 (257)
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence            9888763   22  334455788888889999887654433

>KOG1915|consensus

Probab=86.71  E-value=16  Score=32.73  Aligned_cols=93  Identities=18%  Similarity=0.358  Sum_probs=71.9

Q ss_pred             HHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-------HHHHHHHHhhccCCHHHHHHHHH----hcCC
Q psy12373         35 WTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED-------YDNVVRVDLDHLNDIRHAVDIVK----AKKC  103 (198)
Q Consensus        35 ~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------~~~av~l~~~~~~~~~~a~~l~~----~~~~  103 (198)
                      |++|+.++..++  .+.+.+--+-|..|+...|-+.|++=-+       |.+-|+.=+ +-+.|+.|-.|=.    -||.
T Consensus       130 ~dRAvt~lPRVd--qlWyKY~ymEE~LgNi~gaRqiferW~~w~P~eqaW~sfI~fEl-RykeieraR~IYerfV~~HP~  206 (677)
T KOG1915|consen  130 WDRAVTILPRVD--QLWYKYIYMEEMLGNIAGARQIFERWMEWEPDEQAWLSFIKFEL-RYKEIERARSIYERFVLVHPK  206 (677)
T ss_pred             HHHHHHhcchHH--HHHHHHHHHHHHhcccHHHHHHHHHHHcCCCcHHHHHHHHHHHH-HhhHHHHHHHHHHHHheeccc
Confidence            666776666665  7888888888999999999999998654       466677777 6688999876644    4777


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        104 TEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       104 ~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ...-..+|++=++.|.+.-|-..|.+|
T Consensus       207 v~~wikyarFE~k~g~~~~aR~VyerA  233 (677)
T KOG1915|consen  207 VSNWIKYARFEEKHGNVALARSVYERA  233 (677)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            777778899988888887777777665

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=86.50  E-value=6.9  Score=29.03  Aligned_cols=66  Identities=24%  Similarity=0.306  Sum_probs=38.7

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      +|.+|.+.+.+ |+++.|++.+..+..----     ..-.+....+++..+-..|++++|+..|.+-      |++.=
T Consensus        13 ly~~a~~~l~~-~~Y~~A~~~le~L~~ryP~-----g~ya~qAqL~l~yayy~~~~y~~A~a~~~rF------irLhP   78 (142)
T PF13512_consen   13 LYQEAQEALQK-GNYEEAIKQLEALDTRYPF-----GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRF------IRLHP   78 (142)
T ss_pred             HHHHHHHHHHh-CCHHHHHHHHHHHHhcCCC-----CcccHHHHHHHHHHHHHccCHHHHHHHHHHH------HHhCC
Confidence            45555555444 6677776666433110000     0014566677888888888888888777765      66555

>KOG4162|consensus

Probab=86.39  E-value=30  Score=32.65  Aligned_cols=46  Identities=11%  Similarity=0.104  Sum_probs=31.7

Q ss_pred             hhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-------------------------HhcCChhhHHhhhhh
Q psy12373        150 GKFLLEEDEPNPVELKRLAIHFEEDKGVLTS-------------------------FRVSQQSRAMPCSSG  195 (198)
Q Consensus       150 ~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A-------------------------~~ag~~~~Al~l~~~  195 (198)
                      .+.+.+....++....-+|-.|-.++++..|                         ..=|+.++|++.|.+
T Consensus       502 ~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~  572 (799)
T KOG4162|consen  502 REALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIH  572 (799)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHH
Confidence            3443455556677777788888888888888                         334567788877754

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=86.39  E-value=13  Score=28.42  Aligned_cols=80  Identities=19%  Similarity=0.230  Sum_probs=59.0

Q ss_pred             CHHHHHHHHHHccCHHHHHhhhhc--cC-ChHHHHHHHHHH-HHcCCHHHHHHHHHHhc-CHHHHHHHHhhccCCHHHHH
Q psy12373         21 NYEKAATCYIQLKNWTKIGQLLPH--IK-SATTFIQYAKAK-EAMGSYRESVGAYERAE-DYDNVVRVDLDHLNDIRHAV   95 (198)
Q Consensus        21 ~~~~Ai~~y~~~~~~~~a~~l~~~--~~-~~~l~~~~A~~~-e~~g~~~~A~~~Y~ka~-~~~~av~l~~~~~~~~~~a~   95 (198)
                      -+...|++..+.|.+..+..++..  ++ ++++...+-.+- ....-+.-|.+++.+.+ .++..|++++ ..|+.-+|.
T Consensus        31 L~~lli~lLi~~~~~~~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~~~~~~iievLL-~~g~vl~AL  109 (167)
T PF07035_consen   31 LYELLIDLLIRNGQFSQLHQLLQYHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLGTAYEEIIEVLL-SKGQVLEAL  109 (167)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhhcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhhhhHHHHHHHHH-hCCCHHHHH
Confidence            356778899999999999888863  23 444443332110 01123778899999999 8999999999 789999999


Q ss_pred             HHHHhc
Q psy12373         96 DIVKAK  101 (198)
Q Consensus        96 ~l~~~~  101 (198)
                      +++++.
T Consensus       110 r~ar~~  115 (167)
T PF07035_consen  110 RYARQY  115 (167)
T ss_pred             HHHHHc
Confidence            999874

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.24  E-value=7.6  Score=31.83  Aligned_cols=57  Identities=12%  Similarity=0.106  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        104 TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +...+++++.+-.+|+++.|...|.+.-+         .+++           .+..|+.+++++....+.|+.++|
T Consensus       178 ~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---------~~P~-----------s~KApdallKlg~~~~~l~~~d~A  234 (262)
T COG1729         178 PNAYYWLGESLYAQGDYEDAAYIFARVVK---------DYPK-----------SPKAPDALLKLGVSLGRLGNTDEA  234 (262)
T ss_pred             chhHHHHHHHHHhcccchHHHHHHHHHHH---------hCCC-----------CCCChHHHHHHHHHHHHhcCHHHH
Confidence            56788999999999999999888865432         2322           255799999999999999999888

>KOG3081|consensus

Probab=86.18  E-value=15  Score=30.33  Aligned_cols=23  Identities=17%  Similarity=0.153  Sum_probs=18.7

Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        158 EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       158 ~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.+|.+..-.|......|+|++|
T Consensus       204 ~~T~~llnG~Av~~l~~~~~eeA  226 (299)
T KOG3081|consen  204 PPTPLLLNGQAVCHLQLGRYEEA  226 (299)
T ss_pred             CCChHHHccHHHHHHHhcCHHHH
Confidence            56788888888888888888888

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=86.13  E-value=1.9  Score=22.80  Aligned_cols=26  Identities=12%  Similarity=0.240  Sum_probs=20.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373        107 AKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       107 ~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      ...+|..+...|++++|++.|.++-.
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44678889999999999999877643

...

>KOG2047|consensus

Probab=85.93  E-value=8.6  Score=35.60  Aligned_cols=99  Identities=19%  Similarity=0.157  Sum_probs=64.9

Q ss_pred             ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---H-----------HHHHHHHhhccCCHHHH---HHHHHhcCCHHH
Q psy12373         44 HIKSATTFIQYAKAKEAMGSYRESVGAYERAED---Y-----------DNVVRVDLDHLNDIRHA---VDIVKAKKCTEG  106 (198)
Q Consensus        44 ~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---~-----------~~av~l~~~~~~~~~~a---~~l~~~~~~~~~  106 (198)
                      ++-+|.+...+|-.+|...-++++-+.|+|+=.   |           .+.|.=|.  .-.++.|   ++-|...-+|..
T Consensus       507 riaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg--g~klEraRdLFEqaL~~Cpp~~  584 (835)
T KOG2047|consen  507 RIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG--GTKLERARDLFEQALDGCPPEH  584 (835)
T ss_pred             hcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHhcCCHHH
Confidence            456899999999999999999999999999753   1           22222221  1233333   333333222332


Q ss_pred             ----HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhh
Q psy12373        107 ----AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLH  147 (198)
Q Consensus       107 ----~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~  147 (198)
                          ...+|+.=++-|--..|+..|.+|   ..++..+.++.++.
T Consensus       585 aKtiyLlYA~lEEe~GLar~amsiyera---t~~v~~a~~l~myn  626 (835)
T KOG2047|consen  585 AKTIYLLYAKLEEEHGLARHAMSIYERA---TSAVKEAQRLDMYN  626 (835)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHH---HhcCCHHHHHHHHH
Confidence                335788778889999999999995   34555555555544

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=85.78  E-value=4.5  Score=36.49  Aligned_cols=44  Identities=9%  Similarity=-0.047  Sum_probs=30.9

Q ss_pred             CCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         89 NDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        89 ~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      |++++|....++    .++......+|+.++..|++++|++.|.+|=+
T Consensus       434 g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        434 GKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            566665554432    23444455789999999999999999988754

>smart00028 TPR Tetratricopeptide repeats

Probab=85.73  E-value=1.6  Score=21.46  Aligned_cols=26  Identities=27%  Similarity=0.492  Sum_probs=21.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ..+..+|..+...|+++.|+..|.++
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~   27 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKA   27 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            35667888999999999999998776

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=85.07  E-value=5.5  Score=27.99  Aligned_cols=62  Identities=8%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             HHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcch
Q psy12373         81 VRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKK  145 (198)
Q Consensus        81 v~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~  145 (198)
                      +++|+ .. +...+..+++.- +.=....+...+.+.+.+.+-+.||..-|.+.+|+++..+...
T Consensus         6 lk~Yl-~~-~~~~l~~llr~~-N~C~~~~~e~~L~~~~~~~eL~~lY~~kg~h~~AL~ll~~l~~   67 (108)
T PF10366_consen    6 LKCYL-ET-NPSLLGPLLRLP-NYCDLEEVEEVLKEHGKYQELVDLYQGKGLHRKALELLKKLAD   67 (108)
T ss_pred             HHHHH-Hh-CHHHHHHHHccC-CcCCHHHHHHHHHHcCCHHHHHHHHHccCccHHHHHHHHHHhc
Confidence            55666 33 556566665532 2222334567889999999999999999999999999876654

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=84.80  E-value=3.7  Score=36.23  Aligned_cols=56  Identities=11%  Similarity=0.008  Sum_probs=40.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCCh---HHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSA---TTFIQYAKAKEAMGSYRESVGAYERAED   76 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~---~l~~~~A~~~e~~g~~~~A~~~Y~ka~~   76 (198)
                      +..|...|+++.|+.+|.++      .++  ..++.   ..++.+|-.+...|++++|+++|.++=.
T Consensus        82 G~AL~~lGryeEAIa~f~rA------LeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         82 GLSLFSKGRVKDALAQFETA------LEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHcCCHHHHHHHHHHH------Hhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34555668888888887443      333  22233   3589999999999999999999999843

>KOG3785|consensus

Probab=84.68  E-value=12  Score=32.40  Aligned_cols=55  Identities=16%  Similarity=0.158  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHhcCC
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKAKKC  103 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~~~~  103 (198)
                      ..+-.|+|.-.-..|+|++|.+.|.-.-.-        ....-++. .+|++.+|..++.+.++
T Consensus        57 ~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~F-yLg~Y~eA~~~~~ka~k  119 (557)
T KOG3785|consen   57 DSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKF-YLGQYIEAKSIAEKAPK  119 (557)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHH-HHHHHHHHHHHHhhCCC
Confidence            456677888788888888888888766432        12222222 56788888777766554

>KOG2034|consensus

Probab=84.60  E-value=26  Score=33.53  Aligned_cols=69  Identities=14%  Similarity=0.227  Sum_probs=47.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc---CCCCHHHHHHHHHHHHh-CCChhhH
Q psy12373        111 ADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE---DEPNPVELKRLAIHFEE-DKGVLTS  180 (198)
Q Consensus       111 A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~---~~~~~~~~~~~A~~~e~-~g~~~~A  180 (198)
                      .+.|.+-+.-...|.+|+..+.|.+|+++|.+.+ .+-.....+..   .+....+-+++|+|+-. ..+..+|
T Consensus       668 lRlc~~~~~~ra~V~l~~~l~l~~~aVdlAL~~d-~dlak~~A~~~ee~e~lrKkLWLkIAkh~v~~~~~ikk~  740 (911)
T KOG2034|consen  668 LRLCLKFKKTRACVFLLCMLNLFEDAVDLALQFD-IDLAKVIANDPEEDEDLRKKLWLKIAKHVVKQENDIKKA  740 (911)
T ss_pred             HHHHHHhCccceeeeHHHHHHHHHHHHHHHhhcC-HHHHhhhhcChhhHHHHHHHHHHHHHHHHHHhhccHHHH
Confidence            4456666777889999999999999999999988 55444443221   12223577889997754 3444555

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=84.43  E-value=7  Score=26.01  Aligned_cols=60  Identities=13%  Similarity=0.088  Sum_probs=36.8

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ..++-.++| .+.+.++|+.++.+.      .+-....+ --.++..+.+.++..|.|++.+++=.+-
T Consensus         9 ~ie~GlkLY-~~~~~~~Al~~W~~a------L~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q   69 (80)
T PF10579_consen    9 QIEKGLKLY-HQNETQQALQKWRKA------LEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQ   69 (80)
T ss_pred             HHHHHHHHh-ccchHHHHHHHHHHH------HhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456667788 567778888876433      22221111 1234556678888888888887765554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF12854 PPR_1: PPR repeat

Probab=84.32  E-value=2.1  Score=23.28  Aligned_cols=22  Identities=18%  Similarity=0.208  Sum_probs=15.3

Q ss_pred             HHHHHHHHHHcCChHHHHHHHH
Q psy12373        120 FGAAIHFLILSKCYQDAFNLSQ  141 (198)
Q Consensus       120 ~~~Av~~y~~ag~~~~A~~la~  141 (198)
                      |...|..|+++|+.++|+++..
T Consensus        10 y~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen   10 YNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHH
Confidence            3456777777777777777653

>PRK11619 lytic murein transglycosylase; Provisional

Probab=84.25  E-value=34  Score=31.83  Aligned_cols=107  Identities=12%  Similarity=0.019  Sum_probs=67.9

Q ss_pred             HHHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------------------
Q psy12373         26 ATCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------------------   77 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------------------   77 (198)
                      +++-...++|..+...+..++     ...-.+|+|+.++..|+.++|..+|.++-..                       
T Consensus       319 ~r~Al~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~  398 (644)
T PRK11619        319 VRMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQRGFYPMVAAQRLGEEYPLKIDKA  398 (644)
T ss_pred             HHHHHHccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcCCCcHHHHHHHHcCCCCCCCCCCC
Confidence            455557888988766555433     5678889999999999999999999887421                       


Q ss_pred             ------------HHHHHHHhhccCCHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh
Q psy12373         78 ------------DNVVRVDLDHLNDIRHAVDIVK---AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCY  133 (198)
Q Consensus        78 ------------~~av~l~~~~~~~~~~a~~l~~---~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~  133 (198)
                                  ..+++.+. .+|+...|...-.   ...++.....+|.+-.+.|.++.+|..-.+++.|
T Consensus       399 ~~~~~~~~~~~~~~ra~~L~-~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~  468 (644)
T PRK11619        399 PKPDSALTQGPEMARVRELM-YWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLW  468 (644)
T ss_pred             CchhhhhccChHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhH
Confidence                        11222333 3445444433221   1234445556677777777777777777666654

>PF13934 ELYS: Nuclear pore complex assembly

Probab=84.03  E-value=12  Score=29.95  Aligned_cols=50  Identities=14%  Similarity=0.099  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhc---C-HHHHHHHHhhccCCHHHHHHHHHh
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAE---D-YDNVVRVDLDHLNDIRHAVDIVKA  100 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~---~-~~~av~l~~~~~~~~~~a~~l~~~  100 (198)
                      ....-|=|+-+.+++++|+++.....   + ..+.|+..+ ..|+.+-|.++.+.
T Consensus        80 ~~~~~g~W~LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~-~~~~~~lAL~y~~~  133 (226)
T PF13934_consen   80 IKFIQGFWLLDHGDFEEALELLSHPSLIPWFPDKILQALL-RRGDPKLALRYLRA  133 (226)
T ss_pred             HHHHHHHHHhChHhHHHHHHHhCCCCCCcccHHHHHHHHH-HCCChhHHHHHHHh
Confidence            33344666666666666666665542   1 346666666 44666666666654

>KOG0687|consensus

Probab=83.45  E-value=10  Score=32.24  Aligned_cols=67  Identities=16%  Similarity=0.123  Sum_probs=33.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHH----HHHHHcCCHHHHHHHHHHhcCHHHHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYA----KAKEAMGSYRESVGAYERAEDYDNVV   81 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A----~~~e~~g~~~~A~~~Y~ka~~~~~av   81 (198)
                      +++|.+-||-+.|.+.+.+.  +++.+.+.-+++---....+|    .+.--....+.|-.+++++|||++==
T Consensus       111 aeYycqigDkena~~~~~~t--~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrN  181 (393)
T KOG0687|consen  111 AEYYCQIGDKENALEALRKT--YEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRN  181 (393)
T ss_pred             HHHHHHhccHHHHHHHHHHH--HHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhh
Confidence            34555555555555555432  333333322333222222333    33334446778888888888886543

>KOG0495|consensus

Probab=83.40  E-value=24  Score=33.00  Aligned_cols=52  Identities=19%  Similarity=0.252  Sum_probs=43.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhc--------CHHHHHHHHhhccCCHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAE--------DYDNVVRVDLDHLNDIRHAVDIVK   99 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~--------~~~~av~l~~~~~~~~~~a~~l~~   99 (198)
                      ..+|..-+++.-|..|+...|-..+.++.        -|..+|+|=+ +.|+.+.|..++.
T Consensus       718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~El-R~gn~~~a~~lma  777 (913)
T KOG0495|consen  718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMEL-RAGNKEQAELLMA  777 (913)
T ss_pred             CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHH-HcCCHHHHHHHHH
Confidence            56788888999999999999999998875        3788899999 8899988876653

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=83.16  E-value=12  Score=30.65  Aligned_cols=60  Identities=17%  Similarity=0.164  Sum_probs=44.7

Q ss_pred             HcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CHHHHHHHHHHcCCh
Q psy12373         60 AMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHG-DFGAAIHFLILSKCY  133 (198)
Q Consensus        60 ~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g-~~~~Av~~y~~ag~~  133 (198)
                      ..|+++.|..+|.|+.+...        ...++.+..+++.      .+.++.-+.+.+ +++.|+..+.+|-++
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~--------~~~~~~~~~La~~------~yn~G~~l~~~~~~~~~a~~wL~~a~~~   65 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLN--------SLDPDMAEELARV------CYNIGKSLLSKKDKYEEAVKWLQRAYDI   65 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHh--------cCCcHHHHHHHHH------HHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence            57899999999999855443        2356666666654      667888888888 899999888776554

It is also involved in sporulation [].

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=83.09  E-value=8.5  Score=31.99  Aligned_cols=75  Identities=17%  Similarity=0.042  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHcCC-----------hHHHHHHHHHcch--hhHHhhhh--hhc-CCCCHHHHHHH
Q psy12373        104 TEGAKRIADYCNKHGDFGAAIHFLILSKC-----------YQDAFNLSQQHKK--LHEFGKFL--LEE-DEPNPVELKRL  167 (198)
Q Consensus       104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag~-----------~~~A~~la~~~~~--~~~~~~~~--~l~-~~~~~~~~~~~  167 (198)
                      .+.=..+|+.+...|++..|+..|.+|.+           +-+++  ..+.+.  ......++  .|. ++.++.....+
T Consensus       156 ~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL--~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         156 AEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEAL--YYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             chhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHH--HHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            33445789999999999999999999877           22222  222222  21222222  144 46678899999


Q ss_pred             HHHHHhCCChhhH
Q psy12373        168 AIHFEEDKGVLTS  180 (198)
Q Consensus       168 A~~~e~~g~~~~A  180 (198)
                      |.-+.++|+|.+|
T Consensus       234 A~~afe~g~~~~A  246 (287)
T COG4235         234 AFAAFEQGDYAEA  246 (287)
T ss_pred             HHHHHHcccHHHH
Confidence            9999999999998

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=83.02  E-value=15  Score=26.48  Aligned_cols=22  Identities=9%  Similarity=0.057  Sum_probs=13.3

Q ss_pred             HHHHHHHHcCChHHHHHHHHHc
Q psy12373        122 AAIHFLILSKCYQDAFNLSQQH  143 (198)
Q Consensus       122 ~Av~~y~~ag~~~~A~~la~~~  143 (198)
                      ..+..|...|++.+|++.+.+.
T Consensus       101 ~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen  101 LLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHHHH
Confidence            4566666666666666666544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1156|consensus

Probab=82.86  E-value=29  Score=32.11  Aligned_cols=75  Identities=17%  Similarity=0.202  Sum_probs=51.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCH-HHH-------HHHHhhccCCHHHHHHHHHh---cCCHHHHH--HHHHHHHhcCC
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDY-DNV-------VRVDLDHLNDIRHAVDIVKA---KKCTEGAK--RIADYCNKHGD  119 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~-~~a-------v~l~~~~~~~~~~a~~l~~~---~~~~~~~~--~~A~~~~~~g~  119 (198)
                      .+++++-..|+++.|.++--.|=+. -..       .||++ +.|.++.|.....+   ...++.++  .+|+|+...+.
T Consensus       376 ~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~k-H~G~l~eAa~~l~ea~elD~aDR~INsKcAKYmLrAn~  454 (700)
T KOG1156|consen  376 FLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFK-HAGLLDEAAAWLDEAQELDTADRAINSKCAKYMLRANE  454 (700)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHH-hcCChHHHHHHHHHHHhccchhHHHHHHHHHHHHHccc
Confidence            4589999999999998876665442 122       27778 99999999887754   34455554  47777777666


Q ss_pred             HHHHHHHHH
Q psy12373        120 FGAAIHFLI  128 (198)
Q Consensus       120 ~~~Av~~y~  128 (198)
                      .++|.+...
T Consensus       455 i~eA~~~~s  463 (700)
T KOG1156|consen  455 IEEAEEVLS  463 (700)
T ss_pred             cHHHHHHHH
Confidence            666655433

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=82.79  E-value=41  Score=31.26  Aligned_cols=161  Identities=14%  Similarity=0.108  Sum_probs=90.1

Q ss_pred             CHHHHHhhhhc--cC----ChHHHHHHHHH-HHH--cCCHHHHHHHHHHhcCHHHHHHHHhhc---cCCHHHHHHHHHhc
Q psy12373         34 NWTKIGQLLPH--IK----SATTFIQYAKA-KEA--MGSYRESVGAYERAEDYDNVVRVDLDH---LNDIRHAVDIVKAK  101 (198)
Q Consensus        34 ~~~~a~~l~~~--~~----~~~l~~~~A~~-~e~--~g~~~~A~~~Y~ka~~~~~av~l~~~~---~~~~~~a~~l~~~~  101 (198)
                      .|..+.++.--  +.    -+.....+|+. |.+  ..+..++.=+|...|.-.-...++. .   ...-.+..+.....
T Consensus       367 ~W~~~r~~gv~~W~~~~~~Lr~~~E~iAr~~~~~~~~~dp~~~al~YlAl~Kk~vL~~L~k-~a~~~~~~~k~~~Fl~nd  445 (631)
T PF12234_consen  367 SWEEARELGVGFWLRSIESLRSQFEKIARNEFQKNDTKDPSDCALFYLALGKKKVLAGLWK-MASWHKEQQKMAKFLSND  445 (631)
T ss_pred             CHHHHHhhCCEEeecCHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHhccHHHHHHHHH-hhhcccccHHHHHHHhhc
Confidence            57776655421  12    23455566763 333  4778888888888887654444444 1   11212233333221


Q ss_pred             CC----HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc-chhhHHhhhhhh-cCCCCHHHHHHHHHHHH---
Q psy12373        102 KC----TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH-KKLHEFGKFLLE-EDEPNPVELKRLAIHFE---  172 (198)
Q Consensus       102 ~~----~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~-~~~~~~~~~~~l-~~~~~~~~~~~~A~~~e---  172 (198)
                      -+    ..++..=|-.+.++.+|+-|.-||..||+..+|++++.+. +..+..--++++ ..+..|....-+-++..   
T Consensus       446 F~~~rwr~AAlKNAyaLlsk~Ry~~AAaFFLLag~l~dAv~V~~~~l~D~qLAi~i~Rl~e~d~gp~~~~ll~~~vLp~a  525 (631)
T PF12234_consen  446 FTEPRWRTAALKNAYALLSKHRYEYAAAFFLLAGSLKDAVNVCLRQLNDPQLAIAIARLYEGDNGPVLKKLLEEHVLPEA  525 (631)
T ss_pred             CCChHHHHHHHHhHHHHHhcccHHHHHHHHHhcccHHHHHHHHHHHccChhHHHHHHHHHcCCCchHHHHHHHHhhhccc
Confidence            11    1122223555778899999999999999999999999765 444333333233 23334433222222221   


Q ss_pred             -hCC-ChhhH---HhcCChhhHHhhhhh
Q psy12373        173 -EDK-GVLTS---FRVSQQSRAMPCSSG  195 (198)
Q Consensus       173 -~~g-~~~~A---~~ag~~~~Al~l~~~  195 (198)
                       ..| .|...   -.-|+++.|++.+..
T Consensus       526 ~~~~d~wl~s~~~W~L~~~~~ai~~Li~  553 (631)
T PF12234_consen  526 IKEGDRWLASWAFWMLGDYDEAIRALIS  553 (631)
T ss_pred             cccCCHHHHHHHHHhcCCHHHHHHHHhc
Confidence             122 33333   778899999887764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2047|consensus

Probab=82.43  E-value=10  Score=35.11  Aligned_cols=115  Identities=18%  Similarity=0.211  Sum_probs=74.0

Q ss_pred             HHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH------HHHHHHHhh----------ccCCHHHHHHHHHhc
Q psy12373         38 IGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY------DNVVRVDLD----------HLNDIRHAVDIVKAK  101 (198)
Q Consensus        38 a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~------~~av~l~~~----------~~~~~~~a~~l~~~~  101 (198)
                      +...+.-...+.++..+|+.=|..|.-..|+..|.++-.-      ...-+||+.          +.+=+++|+..   .
T Consensus       576 aL~~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~---L  652 (835)
T KOG2047|consen  576 ALDGCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES---L  652 (835)
T ss_pred             HHhcCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh---C
Confidence            4444444446788999999999999999999999998632      233344441          11223444443   3


Q ss_pred             CCHHH---HHHHHHHHHhcCCHHHHHHHHHHcCC----------hHHHHHHHHHcchhhHHhhhhhh
Q psy12373        102 KCTEG---AKRIADYCNKHGDFGAAIHFLILSKC----------YQDAFNLSQQHKKLHEFGKFLLE  155 (198)
Q Consensus       102 ~~~~~---~~~~A~~~~~~g~~~~Av~~y~~ag~----------~~~A~~la~~~~~~~~~~~~~~l  155 (198)
                      |+..+   +...|..=.+.|.++.|-..|.-+-+          |+.=-..=.+||+.+.+.+++.+
T Consensus       653 p~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keMLRi  719 (835)
T KOG2047|consen  653 PDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEMLRI  719 (835)
T ss_pred             ChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence            44333   33445555678999999999987766          32222333578888888888754

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=82.37  E-value=37  Score=32.55  Aligned_cols=39  Identities=13%  Similarity=-0.101  Sum_probs=36.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      .++++..-+.+|...|...+||++=.+|||+..|..+.-
T Consensus       346 ~~~lH~~Aa~w~~~~g~~~eAI~hAlaA~d~~~aa~lle  384 (894)
T COG2909         346 LKELHRAAAEWFAEHGLPSEAIDHALAAGDPEMAADLLE  384 (894)
T ss_pred             hhHHHHHHHHHHHhCCChHHHHHHHHhCCCHHHHHHHHH
Confidence            478898999999999999999999999999999999887

>KOG0624|consensus

Probab=82.35  E-value=32  Score=29.75  Aligned_cols=24  Identities=25%  Similarity=0.346  Sum_probs=15.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373        102 KCTEGAKRIADYCNKHGDFGAAIH  125 (198)
Q Consensus       102 ~~~~~~~~~A~~~~~~g~~~~Av~  125 (198)
                      .+++.++.+++.+-..||.+.++.
T Consensus       221 DnTe~~ykis~L~Y~vgd~~~sL~  244 (504)
T KOG0624|consen  221 DNTEGHYKISQLLYTVGDAENSLK  244 (504)
T ss_pred             cchHHHHHHHHHHHhhhhHHHHHH
Confidence            456667777777777777665544

>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking

Probab=81.93  E-value=3.8  Score=26.01  Aligned_cols=24  Identities=29%  Similarity=0.552  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +..-|.-++..|++++|+++|..+
T Consensus         8 ~~~~Av~~D~~g~~~~A~~~Y~~a   31 (69)
T PF04212_consen    8 LIKKAVEADEAGNYEEALELYKEA   31 (69)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHH
Confidence            345688899999999999999998

; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=81.80  E-value=3.3  Score=22.70  Aligned_cols=24  Identities=17%  Similarity=0.328  Sum_probs=17.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        107 AKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       107 ~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ...+|..+...|++++|..++.++
T Consensus         5 ~~~la~~~~~~g~~~~A~~~~~~a   28 (42)
T PF13374_consen    5 LNNLANAYRAQGRYEEALELLEEA   28 (42)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcchhhHHHHHH
Confidence            346788888888888888887665

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=81.77  E-value=15  Score=28.85  Aligned_cols=81  Identities=17%  Similarity=0.096  Sum_probs=59.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhcC------H-----HHHHHHHhhccCCHHHHHHHHHhcCCH--HH--HHHHHHHHHh
Q psy12373         52 IQYAKAKEAMGSYRESVGAYERAED------Y-----DNVVRVDLDHLNDIRHAVDIVKAKKCT--EG--AKRIADYCNK  116 (198)
Q Consensus        52 ~~~A~~~e~~g~~~~A~~~Y~ka~~------~-----~~av~l~~~~~~~~~~a~~l~~~~~~~--~~--~~~~A~~~~~  116 (198)
                      ..+|+.+...|+++.|+.-...+-+      +     .+.-|+.+ ..|..|+|..+...-..+  ..  ...-+..|..
T Consensus        93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~-q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~  171 (207)
T COG2976          93 LELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQL-QQKKADAALKTLDTIKEESWAAIVAELRGDILLA  171 (207)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHH-HhhhHHHHHHHHhccccccHHHHHHHHhhhHHHH
Confidence            4678899999999999988774432      1     34456667 789999999887653332  32  3345788999


Q ss_pred             cCCHHHHHHHHHHcCCh
Q psy12373        117 HGDFGAAIHFLILSKCY  133 (198)
Q Consensus       117 ~g~~~~Av~~y~~ag~~  133 (198)
                      .|+-++|...|.+|-.-
T Consensus       172 kg~k~~Ar~ay~kAl~~  188 (207)
T COG2976         172 KGDKQEARAAYEKALES  188 (207)
T ss_pred             cCchHHHHHHHHHHHHc
Confidence            99999999988877553

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=80.85  E-value=12  Score=30.19  Aligned_cols=29  Identities=14%  Similarity=0.284  Sum_probs=24.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      ++...+..|..+...|+|++|++.|.+.-
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~   59 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALD   59 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            56667788999999999999999998874

>KOG1524|consensus

Probab=80.76  E-value=14  Score=33.50  Aligned_cols=51  Identities=16%  Similarity=0.223  Sum_probs=45.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCC
Q psy12373         52 IQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC  103 (198)
Q Consensus        52 ~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~  103 (198)
                      .+.|...--.|...+|.-..+++|....||.+.+ ++-+|..|.+++.++..
T Consensus       648 ~~mA~~~l~~G~~~eAe~iLl~~gl~~qav~lni-~m~nW~RALEl~~K~K~  698 (737)
T KOG1524|consen  648 EQMAENSLMLGRMLEAETILLHGGLIEQAVGLNI-RMHNWRRALELSQKHKE  698 (737)
T ss_pred             HHHHHHHHHhccchhhhHHHHhcchHHHhhhhhh-hhhhHHHHHHHHHhHHH
Confidence            4677778888999999999999999999999999 89999999999987753

>KOG3060|consensus

Probab=80.67  E-value=8.1  Score=31.71  Aligned_cols=20  Identities=40%  Similarity=0.600  Sum_probs=13.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHc
Q psy12373         13 WTLYESAGNYEKAATCYIQL   32 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~   32 (198)
                      +-+++..|+++.|++.|...
T Consensus        93 am~lEa~~~~~~A~e~y~~l  112 (289)
T KOG3060|consen   93 AMLLEATGNYKEAIEYYESL  112 (289)
T ss_pred             HHHHHHhhchhhHHHHHHHH
Confidence            45667777777777777643

>KOG1128|consensus

Probab=80.27  E-value=3  Score=38.73  Aligned_cols=79  Identities=16%  Similarity=0.102  Sum_probs=58.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC--CHH--HHHHHHHHHHhcCCHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK--CTE--GAKRIADYCNKHGDFGA  122 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~--~~~--~~~~~A~~~~~~g~~~~  122 (198)
                      -+.+-..+|..+-+-|-..+|+..|+|-+.|...|-+|+ .+|+-.+|..|-++.-  +++  ..+.++......--+++
T Consensus       397 ~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~-~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEk  475 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYL-LLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEK  475 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHH-HhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHH
Confidence            456777889999999999999999999999999999999 9999999988876421  222  22334444333333455


Q ss_pred             HHHH
Q psy12373        123 AIHF  126 (198)
Q Consensus       123 Av~~  126 (198)
                      |.++
T Consensus       476 awEl  479 (777)
T KOG1128|consen  476 AWEL  479 (777)
T ss_pred             HHHH
Confidence            5554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	198
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.56
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.53
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.34
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.31
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	99.14
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.03
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.03
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.97
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.96
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	98.95
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.93
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.88
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.87
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.86
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	98.85
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.84
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.82
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.81
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.81
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.79
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	98.79
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.76
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	98.72
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.69
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	98.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	98.68
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.67
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.66
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	98.65
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	98.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.65
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	98.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.64
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	98.63
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	98.6
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.59
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	98.56
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	98.55
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.55
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.54
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.52
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	98.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.47
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.47
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.47
2gw1_A	514	Mitochondrial precursor proteins import receptor;	98.46
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.45
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.43
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.42
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.41
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.41
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	98.41
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.4
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.4
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.38
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	98.37
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.37
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.37
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	98.37
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.36
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	98.36
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.34
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.33
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.33
3u4t_A	272	TPR repeat-containing protein; structural genomics	98.32
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.31
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.29
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.29
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.29
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.27
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.27
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.26
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	98.26
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.25
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	98.24
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.22
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.21
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.19
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	98.19
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	98.18
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.16
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.15
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.12
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.03
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.0
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.99
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.99
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	97.97
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.97
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.96
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.94
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.93
4g1t_A	472	Interferon-induced protein with tetratricopeptide	97.92
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	97.92
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.91
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.89
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.86
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	97.86
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.85
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.85
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	97.85
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.85
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	97.84
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.84
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	97.83
2pm7_A	399	Protein WEB1, protein transport protein SEC31; bet	97.83
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.81
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.81
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.81
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.8
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.8
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	97.79
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	97.79
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.77
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.74
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.73
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.72
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.7
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.7
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	97.69
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	97.65
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.64
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	97.63
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.62
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	97.62
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	97.61
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.61
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	97.6
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	97.6
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	97.6
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.58
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.57
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.57
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	97.56
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	97.55
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	97.54
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	97.54
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	97.53
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.53
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.49
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.49
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	97.48
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	97.48
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.47
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	97.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	97.42
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	97.41
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.41
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.36
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	97.36
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	97.35
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	97.33
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.32
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.29
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.28
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	97.28
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	97.27
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.26
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	97.26
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	97.25
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.23
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	97.18
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.17
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	97.14
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.14
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.11
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	97.07
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	97.07
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	97.05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	97.05
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	97.05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.03
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.95
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.9
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	96.89
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.88
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	96.84
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.79
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	96.76
1klx_A	138	Cysteine rich protein B; structural genomics, heli	96.72
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	96.7
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	96.68
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	96.63
3k9i_A	117	BH0479 protein; putative protein binding protein,	96.59
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	96.58
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	96.55
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	96.54
2pm7_A	399	Protein WEB1, protein transport protein SEC31; bet	96.49
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	96.38
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.16
2kat_A	115	Uncharacterized protein; NESG, structure, structur	96.07
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.05
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	96.04
2l6j_A	111	TPR repeat-containing protein associated with HSP;	95.97
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	95.93
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	95.9
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	95.49
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.45
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.63
3mzk_B	441	Protein transport protein SEC16; alpha-helical-sta	94.51
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	94.09
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	93.55
2qx5_A	661	Nucleoporin NIC96; mRNA transport, nuclear pore co	93.46
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	93.34
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	92.79
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	92.71
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.13
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	91.7
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	91.68
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.31
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	91.12
3qil_A	125	Clathrin heavy chain 1; clathrin trimerization dom	89.97
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	89.25
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.06
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	88.32
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	87.79
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	87.63
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.16
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	86.61
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	86.52
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	85.54
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	84.01
3mzk_B	441	Protein transport protein SEC16; alpha-helical-sta	83.5
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	82.68
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	81.79
3ax2_A	73	Mitochondrial import receptor subunit TOM20 homol;	81.64

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.72  E-value=4.7e-16  Score=147.78  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=121.4

Q ss_pred             cchHHHHHHHHHHcCCHHHHHHHHH-HccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHH---HH
Q psy12373          6 LTLDRGKWTLYESAGNYEKAATCYI-QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDN---VV   81 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~-~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~---av   81 (198)
                      +|+|++|..+|++++.+++|+..++ ..++|++|.+++.+++++.++..+|+.++..|++++|+++|++++++..   .+
T Consensus      1062 lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa 1141 (1630)
T 1xi4_A         1062 NELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVV 1141 (1630)
T ss_pred             CCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHH
Confidence            5899999999999999999988888 9999999999999999999999999999999999999999999998654   55


Q ss_pred             HHHhhccCCHHHHHHHHHh--------------------------------cCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         82 RVDLDHLNDIRHAVDIVKA--------------------------------KKCTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus        82 ~l~~~~~~~~~~a~~l~~~--------------------------------~~~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                      ..+. ++|+|++|++....                                .++......+|.+|.+.|++++|+.+|.+
T Consensus      1142 ~~~~-~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~k 1220 (1630)
T 1xi4_A         1142 QAAN-TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNN 1220 (1630)
T ss_pred             HHHH-HcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHh
Confidence            5666 78888888765522                                11222344688999999999999999999


Q ss_pred             cCChHHHHHHHHHcchhhHHhhh
Q psy12373        130 SKCYQDAFNLSQQHKKLHEFGKF  152 (198)
Q Consensus       130 ag~~~~A~~la~~~~~~~~~~~~  152 (198)
                      ++.|....+.....|.++...++
T Consensus      1221 A~ny~rLA~tLvkLge~q~AIEa 1243 (1630)
T 1xi4_A         1221 VSNFGRLASTLVHLGEYQAAVDG 1243 (1630)
T ss_pred             hhHHHHHHHHHHHhCCHHHHHHH
Confidence            98888877777777666544443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.56  E-value=2.3e-13  Score=129.54  Aligned_cols=190  Identities=13%  Similarity=0.159  Sum_probs=141.7

Q ss_pred             cchHHHHHHHHHHcCCHHH---HHHHHHHccCHHHHHhhhhc--------------------------------cCChHH
Q psy12373          6 LTLDRGKWTLYESAGNYEK---AATCYIQLKNWTKIGQLLPH--------------------------------IKSATT   50 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~~~---Ai~~y~~~~~~~~a~~l~~~--------------------------------~~~~~l   50 (198)
                      .|++++|.+.|+++++++-   .+.++.++|+|+.+.+.+..                                ..+..-
T Consensus      1118 ~G~~kEAIdsYiKAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad 1197 (1630)
T 1xi4_A         1118 KGMVKEAIDSYIKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAH 1197 (1630)
T ss_pred             CCCHHHHHHHHHhcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHH
Confidence            4788888888888876544   55556666666665554411                                112233


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHH------------HHHHHHH---
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAK------------RIADYCN---  115 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~------------~~A~~~~---  115 (198)
                      +..+|..+++.|+|++|+.+|.++++|.++.++++ ++|++++|+..+++..++..-.            .+|+.+.   
T Consensus      1198 ~~~iGd~le~eg~YeeA~~~Y~kA~ny~rLA~tLv-kLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~I 1276 (1630)
T 1xi4_A         1198 IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLV-HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI 1276 (1630)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHhhhHHHHHHHHHH-HhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence            45699999999999999999999999999999999 9999999999999988877633            2344443   


Q ss_pred             --hcCCHHHHHHHHHHcCChHHHHHHHHHcc-----hhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCC------------
Q psy12373        116 --KHGDFGAAIHFLILSKCYQDAFNLSQQHK-----KLHEFGKFLLEEDEPNPVELKRLAIHFEEDKG------------  176 (198)
Q Consensus       116 --~~g~~~~Av~~y~~ag~~~~A~~la~~~~-----~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~------------  176 (198)
                        ..+.+++++.+|.+.|.|++|+++++..=     .+..+.++..+-....|+-+....+.|.+.++            
T Consensus      1277 iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r~~e~~~ 1356 (1630)
T 1xi4_A         1277 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH 1356 (1630)
T ss_pred             hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhHHHHHHH
Confidence              23356789999999999999999995441     12233333223455789999999999999999            


Q ss_pred             -hhhH----HhcCChhhHHhhhhhc
Q psy12373        177 -VLTS----FRVSQQSRAMPCSSGH  196 (198)
Q Consensus       177 -~~~A----~~ag~~~~Al~l~~~~  196 (198)
                       |.++    ++.|+|+.|+....+|
T Consensus      1357 lW~elv~LY~~~~e~dnA~~tm~~h 1381 (1630)
T 1xi4_A         1357 LWAELVFLYDKYEEYDNAIITMMNH 1381 (1630)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHhc
Confidence             5555    8999999999555554

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.53  E-value=3.7e-13  Score=121.88  Aligned_cols=158  Identities=15%  Similarity=0.084  Sum_probs=127.7

Q ss_pred             HHHHHHHHHHcCCHHHHH----------HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH
Q psy12373          9 DRGKWTLYESAGNYEKAA----------TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD   78 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai----------~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~   78 (198)
                      .+.+.+++++.|.++.|+          ++....++|+.|.++++.++++.....+|+.+...|+++.|+++|.+++|+.
T Consensus       632 ~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~  711 (814)
T 3mkq_A          632 LTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLTDESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLE  711 (814)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHH
T ss_pred             HHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHHhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChh
Confidence            356677788888777775          4567889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhccCCHHHHHHHHHh---cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhh
Q psy12373         79 NVVRVDLDHLNDIRHAVDIVKA---KKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE  155 (198)
Q Consensus        79 ~av~l~~~~~~~~~~a~~l~~~---~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l  155 (198)
                      .+..++. ..++.+...++++.   .+....+.   ..|...|++++|+++|.+.++|++|+.||++++..+   +.   
T Consensus       712 ~l~~l~~-~~~~~~~~~~~~~~a~~~~~~~~A~---~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~---~~---  781 (814)
T 3mkq_A          712 SLFLLHS-SFNNKEGLVTLAKDAETTGKFNLAF---NAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGD---NE---  781 (814)
T ss_dssp             HHHHHHH-HTTCHHHHHHHHHHHHHTTCHHHHH---HHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCH---HH---
T ss_pred             hhHHHHH-HcCCHHHHHHHHHHHHHcCchHHHH---HHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCCh---HH---
Confidence            9999999 78998876666543   33333322   236668999999999999999999999999886542   00   


Q ss_pred             cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        156 EDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       156 ~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                          .+.+....+++++..|++..|
T Consensus       782 ----i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          782 ----VNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             ----HHHHHHHHHHHHHTTTCHHHH
T ss_pred             ----HHHHHHHHHHHHHhccchhHH
Confidence                345666788999999987656

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.34  E-value=2.9e-11  Score=104.07  Aligned_cols=192  Identities=10%  Similarity=0.086  Sum_probs=106.9

Q ss_pred             ccchHHHHHHHHHHcCCH--HHHHH-----HHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373          5 ALTLDRGKWTLYESAGNY--EKAAT-----CYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY   77 (198)
Q Consensus         5 ~~~~~~~Aa~~y~~~g~~--~~Ai~-----~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~   77 (198)
                      .+|+|++|.++|..+-..  +-++.     +|.++|+|+++.++++.. +...+..+|..|...|.|++|+.+|.++..|
T Consensus        73 ~~g~~EeAi~yl~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~p-n~~a~~~IGd~~~~~g~yeeA~~~Y~~a~n~  151 (449)
T 1b89_A           73 TSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGP-NNAHIQQVGDRCYDEKMYDAAKLLYNNVSNF  151 (449)
T ss_dssp             ------------------------------------CHHHHTTTTTCC-----------------CTTTHHHHHHHTTCH
T ss_pred             hCCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHcCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHhhhH
Confidence            457888888877665431  12555     999999999999888763 3457888999999999999999999999999


Q ss_pred             HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHH-----------------HHHHHcCChHHHHHHH
Q psy12373         78 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI-----------------HFLILSKCYQDAFNLS  140 (198)
Q Consensus        78 ~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av-----------------~~y~~ag~~~~A~~la  140 (198)
                      .+.+.+++ ++|++++|++.+++..++..-..+...|...|+++.|.                 ++|.++|+|++|+.+.
T Consensus       152 ~~LA~~L~-~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lL  230 (449)
T 1b89_A          152 GRLASTLV-HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITML  230 (449)
T ss_dssp             HHHHHHHH-TTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHH-HhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999 99999999999999888877777778888888766554                 8999999999999998


Q ss_pred             HHcch-----hhHHhhhhhhcCCCCHHHHHHHHHH-------------HHhCCChhhH----HhcCChhhHHhhhhhcCC
Q psy12373        141 QQHKK-----LHEFGKFLLEEDEPNPVELKRLAIH-------------FEEDKGVLTS----FRVSQQSRAMPCSSGHHP  198 (198)
Q Consensus       141 ~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~-------------~e~~g~~~~A----~~ag~~~~Al~l~~~~~~  198 (198)
                      ++.=.     +..+.++.-+-..-.|+-+...-+.             +++..-|.+.    ..-|+|+.|+....+|-|
T Consensus       231 e~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm~~h~~  310 (449)
T 1b89_A          231 EAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPT  310 (449)
T ss_dssp             HHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred             HHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHhCCh
Confidence            76622     1222222111112223333322233             3333334443    677888888888887754

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.31  E-value=3.8e-11  Score=108.67  Aligned_cols=116  Identities=12%  Similarity=0.061  Sum_probs=104.9

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD   86 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~   86 (198)
                      .+++..++++.+.|+++.|+++|.++++|+.+..|.....+.+.+..+++..+..|++..|..+|.+.|++++|++|++ 
T Consensus       682 ~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~-  760 (814)
T 3mkq_A          682 MKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLI-  760 (814)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH-
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHH-
Confidence            3567889999999999999999999999999999988888999999999999999999999999999999999999999 


Q ss_pred             ccCCHHHHHHHHHhcCCHH-----HHHHHHHHHHhcCCHHHH
Q psy12373         87 HLNDIRHAVDIVKAKKCTE-----GAKRIADYCNKHGDFGAA  123 (198)
Q Consensus        87 ~~~~~~~a~~l~~~~~~~~-----~~~~~A~~~~~~g~~~~A  123 (198)
                      .+++|++|+.+|+++...+     ....++++++..|+.+.|
T Consensus       761 ~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          761 KSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             HTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred             HcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence            8999999999999987544     345788999999986543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=99.14  E-value=1.7e-09  Score=81.99  Aligned_cols=130  Identities=8%  Similarity=0.037  Sum_probs=107.6

Q ss_pred             CCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHH
Q psy12373         20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK   99 (198)
Q Consensus        20 g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~   99 (198)
                      .|++.=-++-+..|+++.|.++++.++++.....+|...-..|+++-|+++|.++||+.+..=+|. ..|+-++..++++
T Consensus         6 ~D~~~rF~LAL~lg~l~~A~e~a~~l~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~-~tg~~e~L~kla~   84 (177)
T 3mkq_B            6 QDPHIRFDLALEYGNLDAALDEAKKLNDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYL-VTGDVNKLSKMQN   84 (177)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHH-HHTCHHHHHHHHH
T ss_pred             CChHHHHHHHHhcCCHHHHHHHHHHhCCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHH-HhCCHHHHHHHHH
Confidence            455566667778889999988888889999999999999999999999999999999999999988 7788888766654


Q ss_pred             ---hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373        100 ---AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL  153 (198)
Q Consensus       100 ---~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~  153 (198)
                         ..++......+   +--.||+++++++|.+.|+|.+|.-+|+.++..+...+++
T Consensus        85 iA~~~g~~n~af~~---~l~lGdv~~~i~lL~~~~r~~eA~~~A~t~g~~~~a~~~~  138 (177)
T 3mkq_B           85 IAQTREDFGSMLLN---TFYNNSTKERSSIFAEGGSLPLAYAVAKANGDEAAASAFL  138 (177)
T ss_dssp             HHHHTTCHHHHHHH---HHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHCccHHHHHHH---HHHcCCHHHHHHHHHHCCChHHHHHHHHHcCcHHHHHHHH
Confidence               33333333322   3456999999999999999999999999999887777764

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.03  E-value=2.1e-08  Score=86.35  Aligned_cols=187  Identities=11%  Similarity=0.053  Sum_probs=134.6

Q ss_pred             cchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc----CHHHHH
Q psy12373          6 LTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE----DYDNVV   81 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~----~~~~av   81 (198)
                      .|+|++|..+|.++.++.+.+.++.++|+|+.|++...+..++.....+...|...|+|+.|..+.....    +..++|
T Consensus       135 ~g~yeeA~~~Y~~a~n~~~LA~~L~~Lg~yq~AVea~~KA~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv  214 (449)
T 1b89_A          135 EKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELI  214 (449)
T ss_dssp             --CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHhhhHHHHHHHHHHhccHHHHHHHHHHcCCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHH
Confidence            3899999999999999999999999999999999999988888888888899999999999975554322    234455


Q ss_pred             HHHhhccCCHHHHHHHHHhcC--------------------CHHH-------------HHHHHHHHHhcCCHHHHHHHHH
Q psy12373         82 RVDLDHLNDIRHAVDIVKAKK--------------------CTEG-------------AKRIADYCNKHGDFGAAIHFLI  128 (198)
Q Consensus        82 ~l~~~~~~~~~~a~~l~~~~~--------------------~~~~-------------~~~~A~~~~~~g~~~~Av~~y~  128 (198)
                      .+|. ..|.|++|+.+.+..-                    .|+-             .-.+.+.++...-+.+++-+|.
T Consensus       215 ~~Ye-k~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~  293 (449)
T 1b89_A          215 NYYQ-DRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYD  293 (449)
T ss_dssp             HHHH-HTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHH-HCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            5565 6666666666555321                    0110             1123445677778899999999


Q ss_pred             HcCChHHHHHHHHHcch----hhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH--------HhcCChhhHHhhhhhc
Q psy12373        129 LSKCYQDAFNLSQQHKK----LHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS--------FRVSQQSRAMPCSSGH  196 (198)
Q Consensus       129 ~ag~~~~A~~la~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A--------~~ag~~~~Al~l~~~~  196 (198)
                      .-+.|+.|+...-+|+.    .+.|.++  +....+.+++.+...+|.+..  +.+        ..-=++.+++++...+
T Consensus       294 ~~~e~d~A~~tm~~h~~~a~~~~~f~~~--~~kv~n~elyYkai~fyl~~~--p~~l~~ll~~l~~~ld~~r~v~~~~~~  369 (449)
T 1b89_A          294 KYEEYDNAIITMMNHPTDAWKEGQFKDI--ITKVANVELYYRAIQFYLEFK--PLLLNDLLMVLSPRLDHTRAVNYFSKV  369 (449)
T ss_dssp             HTTCHHHHHHHHHHSTTTTCCHHHHHHH--HHHCSSTHHHHHHHHHHHHHC--GGGHHHHHHHHGGGCCHHHHHHHHHHT
T ss_pred             hhchHHHHHHHHHhCChhhhhhHHHHHH--HhchhHHHHHHHHHHHHHhcC--HHHHHHHHHHHHhccCcHHHHHHHHHc
Confidence            99999999998888853    2566777  567778899999999888443  333        2233455555555444


Q ss_pred             C
Q psy12373        197 H  197 (198)
Q Consensus       197 ~  197 (198)
                      +
T Consensus       370 ~  370 (449)
T 1b89_A          370 K  370 (449)
T ss_dssp             T
T ss_pred             C
Confidence            3

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.03  E-value=2.1e-08  Score=81.00  Aligned_cols=72  Identities=15%  Similarity=0.183  Sum_probs=45.1

Q ss_pred             hHHHHHHHHHHc-------CCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcC
Q psy12373          8 LDRGKWTLYESA-------GNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAED   76 (198)
Q Consensus         8 ~~~~Aa~~y~~~-------g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~   76 (198)
                      ++++|..+|.++       |++++|+++|.++      ..+.....+    ...+..+|..+...|++++|+.+|.++  
T Consensus        32 ~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~A--  103 (292)
T 1qqe_A           32 KFEEAADLCVQAATIYRLRKELNLAGDSFLKA------ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA--  103 (292)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCTHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH--
T ss_pred             cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH--
Confidence            356665555554       4555555554433      223223332    357778999999999999999999887  


Q ss_pred             HHHHHHHHhhccCCHH
Q psy12373         77 YDNVVRVDLDHLNDIR   92 (198)
Q Consensus        77 ~~~av~l~~~~~~~~~   92 (198)
                          +.++. ..|++.
T Consensus       104 ----l~l~~-~~g~~~  114 (292)
T 1qqe_A          104 ----IQIFT-HRGQFR  114 (292)
T ss_dssp             ----HHHHH-HTTCHH
T ss_pred             ----HHHHH-HcCCHH
Confidence                55555 444444

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.97  E-value=8.9e-08  Score=83.37  Aligned_cols=82  Identities=9%  Similarity=-0.008  Sum_probs=44.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhc--------CHHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAE--------DYDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY  113 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~--------~~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~  113 (198)
                      +...+..+|..+...|++++|+++|.++-        -+...+.++. ..|++++|..+.++    .+ +......++..
T Consensus       372 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  450 (597)
T 2xpi_A          372 KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFA-IEGEHDQAISAYTTAARLFQGTHLPYLFLGMQ  450 (597)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            45555666666666666666666666542        1234455555 55666666655442    11 22233345555


Q ss_pred             HHhcCCHHHHHHHHHH
Q psy12373        114 CNKHGDFGAAIHFLIL  129 (198)
Q Consensus       114 ~~~~g~~~~Av~~y~~  129 (198)
                      +...|++++|+++|.+
T Consensus       451 ~~~~g~~~~A~~~~~~  466 (597)
T 2xpi_A          451 HMQLGNILLANEYLQS  466 (597)
T ss_dssp             HHHHTCHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHH
Confidence            5555665555555544

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.96  E-value=7e-08  Score=79.92  Aligned_cols=28  Identities=18%  Similarity=0.197  Sum_probs=16.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .......+|..+...|++++|+++|.++
T Consensus       134 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a  161 (388)
T 1w3b_A          134 LYCVRSDLGNLLKALGRLEEAKACYLKA  161 (388)
T ss_dssp             CTHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            3445555566666666666666666554

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=98.95  E-value=3.7e-08  Score=85.76  Aligned_cols=123  Identities=15%  Similarity=0.118  Sum_probs=79.0

Q ss_pred             chHHHHHHHHHHc----C---CHHHHHHHHHHccCHHHHHhhhhccC--C-------------------hHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESA----G---NYEKAATCYIQLKNWTKIGQLLPHIK--S-------------------ATTFIQYAKAK   58 (198)
Q Consensus         7 ~~~~~Aa~~y~~~----g---~~~~Ai~~y~~~~~~~~a~~l~~~~~--~-------------------~~l~~~~A~~~   58 (198)
                      |.+++|..+|.+.    .   -+...+.+|.+.|+++.|.+++.+..  .                   ...+..+|..+
T Consensus       131 g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  210 (597)
T 2xpi_A          131 GDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVY  210 (597)
T ss_dssp             TCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHH
Confidence            5566666666655    1   12334566667777888777776322  1                   45667778888


Q ss_pred             HHcCCHHHHHHHHHHhcCH----HHH------------------------------------------HHHHhhccCCHH
Q psy12373         59 EAMGSYRESVGAYERAEDY----DNV------------------------------------------VRVDLDHLNDIR   92 (198)
Q Consensus        59 e~~g~~~~A~~~Y~ka~~~----~~a------------------------------------------v~l~~~~~~~~~   92 (198)
                      ...|++++|+++|.++-..    ..+                                          +.++. ..|+++
T Consensus       211 ~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~g~~~  289 (597)
T 2xpi_A          211 TNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTS-HEDELR  289 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTT-THHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHc-CcchHH
Confidence            8888888888888876311    111                                          22233 456777


Q ss_pred             HHHHHHHhc----CCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         93 HAVDIVKAK----KCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        93 ~a~~l~~~~----~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +|.++..+.    +++.....++..+...|++++|+.+|.++
T Consensus       290 ~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  331 (597)
T 2xpi_A          290 RAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKI  331 (597)
T ss_dssp             HHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            777776643    33445556788888888888888887765

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.93  E-value=7.9e-08  Score=78.11  Aligned_cols=64  Identities=17%  Similarity=0.121  Sum_probs=40.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLI  128 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~  128 (198)
                      ..+..+|..+...|++++|+++|.++      +.++. ..|+...+...         ...+|..+.. |++++|+++|.
T Consensus        77 ~~~~~lg~~~~~~g~~~~A~~~~~~A------l~l~~-~~g~~~~~a~~---------~~~lg~~~~~-g~~~~A~~~~~  139 (307)
T 2ifu_A           77 KAFEQAGMMLKDLQRMPEAVQYIEKA------SVMYV-ENGTPDTAAMA---------LDRAGKLMEP-LDLSKAVHLYQ  139 (307)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHH------HHHHH-TTTCHHHHHHH---------HHHHHHHHTT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHH------HHHHH-HcCCHHHHHHH---------HHHHHHHHHc-CCHHHHHHHHH
Confidence            46778899999999999999999887      66665 45554432211         2234555544 55555555544


Q ss_pred             H
Q psy12373        129 L  129 (198)
Q Consensus       129 ~  129 (198)
                      +
T Consensus       140 ~  140 (307)
T 2ifu_A          140 Q  140 (307)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.88  E-value=2.1e-07  Score=71.79  Aligned_cols=161  Identities=12%  Similarity=-0.004  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR   82 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~   82 (198)
                      .-+..|.+.|+++.|+..|.++      .++  ..+++..+..+|..+...|++++|+..|.++-.        +...-.
T Consensus        10 ~lg~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~   81 (217)
T 2pl2_A           10 RLGVQLYALGRYDAALTLFERA------LKE--NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSE   81 (217)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HTT--SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            3456677778888888777543      221  334778888999999999999999999988742        123344


Q ss_pred             HHhhcc-----------CCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC---hHHH-HHH---
Q psy12373         83 VDLDHL-----------NDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC---YQDA-FNL---  139 (198)
Q Consensus        83 l~~~~~-----------~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~---~~~A-~~l---  139 (198)
                      ++. ..           |++++|....++    .| ++.....+|..+...|++++|+..|.++-.   ..++ ..+   
T Consensus        82 ~~~-~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~la~~  160 (217)
T 2pl2_A           82 AYV-ALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSALAEL  160 (217)
T ss_dssp             HHH-HHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             HHH-HhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHHHHH
Confidence            455 56           888888776543    33 345566789999999999999988877521   1111 111   


Q ss_pred             HHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        140 SQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       140 a~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ....|.++.......  +. .+.++..+..++..+...|++++|
T Consensus       161 ~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A  204 (217)
T 2pl2_A          161 YLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEA  204 (217)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC-------
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHH
Confidence            223333322221110  22 356788899999999888888887

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.87  E-value=5.2e-07  Score=73.07  Aligned_cols=172  Identities=10%  Similarity=0.024  Sum_probs=119.2

Q ss_pred             chHHHHHHHHHHc--CCHHH-------HHHHHHHccCHHHHHhhhhccCCh--HHHHHHHHHHHHcCCHHHHHHHHHHh-
Q psy12373          7 TLDRGKWTLYESA--GNYEK-------AATCYIQLKNWTKIGQLLPHIKSA--TTFIQYAKAKEAMGSYRESVGAYERA-   74 (198)
Q Consensus         7 ~~~~~Aa~~y~~~--g~~~~-------Ai~~y~~~~~~~~a~~l~~~~~~~--~l~~~~A~~~e~~g~~~~A~~~Y~ka-   74 (198)
                      |.|+.|.+...+.  -+++.       ..++|+..|+++.|...++..+.+  ..+..+|.++...|++++|++.|.+. 
T Consensus        13 g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll   92 (291)
T 3mkr_A           13 GSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREM   92 (291)
T ss_dssp             TCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence            7888888888763  22332       357888899999887776654433  34557789999999999999999873 


Q ss_pred             -c-----CH---HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH---------HH
Q psy12373         75 -E-----DY---DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ---------DA  136 (198)
Q Consensus        75 -~-----~~---~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~---------~A  136 (198)
                       .     +.   ...-.++. ..|++++|.++.++.++++....++..+...|++++|+..|.++-...         .+
T Consensus        93 ~~~~~P~~~~~~~~la~~~~-~~g~~~~Al~~l~~~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a  171 (291)
T 3mkr_A           93 SRSVDVTNTTFLLMAASIYF-YDQNPDAALRTLHQGDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATA  171 (291)
T ss_dssp             HSCCCCSCHHHHHHHHHHHH-HTTCHHHHHHHHTTCCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hcccCCCCHHHHHHHHHHHH-HCCCHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHH
Confidence             1     11   12224555 779999999998885567777788999999999999999988874322         11


Q ss_pred             -HHHHHHcchhhH----HhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        137 -FNLSQQHKKLHE----FGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       137 -~~la~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                       +.+....+.++.    +.+++.. .+.++..+..+|..+...|++++|
T Consensus       172 ~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA  219 (291)
T 3mkr_A          172 WVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAA  219 (291)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHH
Confidence             122222344332    2333222 355788999999999999999888

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.86  E-value=2.6e-08  Score=76.96  Aligned_cols=153  Identities=11%  Similarity=0.017  Sum_probs=93.1

Q ss_pred             HHHHHccCHHHHHhhhhccC-----C-------hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHH
Q psy12373         27 TCYIQLKNWTKIGQLLPHIK-----S-------ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHA   94 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~~~-----~-------~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a   94 (198)
                      .+|...|+++.|...+.+.-     .       ..++..+|..+...|++++|+++|.++-....-..++. .+|++++|
T Consensus        46 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~-~~~~~~~a  124 (258)
T 3uq3_A           46 AAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILT-KLRNAEKE  124 (258)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHH-HHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHH-HHhHHHHH
Confidence            34455566666555543210     1       46677778888888888888888887754333334555 56677777


Q ss_pred             HHHHHhc--CCH---HHHHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH----HHHHHHcchhhHHhhhhh--hc-CC
Q psy12373         95 VDIVKAK--KCT---EGAKRIADYCNKHGDFGAAIHFLILSKC----YQDA----FNLSQQHKKLHEFGKFLL--EE-DE  158 (198)
Q Consensus        95 ~~l~~~~--~~~---~~~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~~~~~~~~~~~~~--l~-~~  158 (198)
                      ....++.  .++   .....+|..+...|++++|+..|.++-.    ...+    ..+....+.++.....+.  +. .+
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~  204 (258)
T 3uq3_A          125 LKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP  204 (258)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCH
Confidence            6665531  222   2344678888899999999888877632    1111    222233344432222221  22 34


Q ss_pred             CCHHHHHHHHHHHHhCCChhhH
Q psy12373        159 PNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       159 ~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..+..+..+|..+...|++++|
T Consensus       205 ~~~~~~~~l~~~~~~~g~~~~A  226 (258)
T 3uq3_A          205 NFVRAYIRKATAQIAVKEYASA  226 (258)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhHHHH
Confidence            5688999999999999999888

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=98.85  E-value=3.1e-07  Score=76.00  Aligned_cols=104  Identities=17%  Similarity=0.134  Sum_probs=69.1

Q ss_pred             HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHH
Q psy12373         26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIR   92 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~   92 (198)
                      ..+|...|++++|.....+     .+....+..+|..+...|++++|++.|.++-.        +.....++. ..|+++
T Consensus        74 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~-~~g~~~  152 (388)
T 1w3b_A           74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLK-ALGRLE  152 (388)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHH-TTSCHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH-HccCHH
Confidence            3445566666666555542     23566788889999999999999999887632        123344555 678888


Q ss_pred             HHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         93 HAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        93 ~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +|..+.++    .|+ ......++..+...|++++|+..|.++
T Consensus       153 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  195 (388)
T 1w3b_A          153 EAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA  195 (388)
T ss_dssp             HHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            88766543    232 344456778888888888887777654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.84  E-value=1.1e-06  Score=70.15  Aligned_cols=155  Identities=9%  Similarity=-0.093  Sum_probs=91.5

Q ss_pred             HHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcC-CHHHHHHHHHHhcC--------HHHHHHHHhhccCC
Q psy12373         25 AATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMG-SYRESVGAYERAED--------YDNVVRVDLDHLND   90 (198)
Q Consensus        25 Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g-~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~   90 (198)
                      .+.++...|+++.+..++.+     ..++..+..+|..+...| ++++|+++|.++-.        +.....++. ..|+
T Consensus        62 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~  140 (330)
T 3hym_B           62 HIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFA-VESE  140 (330)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHH-HHTC
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHH-HccC
Confidence            33445555666666555542     236677888888888888 88888888887642        344455666 6788


Q ss_pred             HHHHHHHHHh----cCC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCCh----HH----HHHHHHHcchhhHH----hhhh
Q psy12373         91 IRHAVDIVKA----KKC-TEGAKRIADYCNKHGDFGAAIHFLILSKCY----QD----AFNLSQQHKKLHEF----GKFL  153 (198)
Q Consensus        91 ~~~a~~l~~~----~~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~----~~----A~~la~~~~~~~~~----~~~~  153 (198)
                      +++|....++    .|. ......+|..+...|++++|+++|.++-..    ..    -..+....+.++..    ..++
T Consensus       141 ~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  220 (330)
T 3hym_B          141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL  220 (330)
T ss_dssp             HHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            8888776543    122 344456777788888888877777665321    01    11122223332211    1111


Q ss_pred             hhc--------CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        154 LEE--------DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       154 ~l~--------~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .+.        .+..+..+..+|..+...|++++|
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            111        133456777788877777877777

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.82  E-value=5.3e-07  Score=66.83  Aligned_cols=140  Identities=9%  Similarity=0.101  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHH
Q psy12373          9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNV   80 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~a   80 (198)
                      |-.-+..|.+.|++++|++.|.++      .++  ..+++..+..+|..+...|++++|++.|.++-..        ...
T Consensus         8 y~~lG~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~   79 (184)
T 3vtx_A            8 YMDIGDKKRTKGDFDGAIRAYKKV------LKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYIL   79 (184)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHH
Confidence            444567788889999999888654      222  3347788999999999999999999999987422        223


Q ss_pred             HHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhh
Q psy12373         81 VRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE  155 (198)
Q Consensus        81 v~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l  155 (198)
                      ..++. ..++++.+.....+    .| ++.....+|..+...|++++|++.|.++-.                      +
T Consensus        80 ~~~~~-~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~----------------------~  136 (184)
T 3vtx_A           80 GSANF-MIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTIS----------------------I  136 (184)
T ss_dssp             HHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------H
T ss_pred             HHHHH-HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHH----------------------h
Confidence            34444 67888888776543    22 345556778888888888888777654311                      1


Q ss_pred             cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        156 EDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       156 ~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                       .+..+..+..+|..|...|++++|
T Consensus       137 -~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A          137 -KPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             -cchhhhHHHHHHHHHHHCCCHHHH
Confidence             245788999999999999999999

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.81  E-value=2.2e-07  Score=72.58  Aligned_cols=164  Identities=10%  Similarity=-0.116  Sum_probs=104.5

Q ss_pred             chHHHHHHHHHHcCCH------------HHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNY------------EKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVG   69 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~------------~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~   69 (198)
                      +.+++|.++|.++-..            -....+|...|+++.|...+.+     ..++..+..+|..+...|++++|++
T Consensus        19 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~   98 (275)
T 1xnf_A           19 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYE   98 (275)
T ss_dssp             HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHH
Confidence            6788888888776541            1345566677888887666653     2367888889999999999999999


Q ss_pred             HHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHc-------
Q psy12373         70 AYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILS-------  130 (198)
Q Consensus        70 ~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a-------  130 (198)
                      +|.++-.        +.....++. ..|++++|..+.++    .|+......+...+...|++++|+.+|.++       
T Consensus        99 ~~~~al~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~  177 (275)
T 1xnf_A           99 AFDSVLELDPTYNYAHLNRGIALY-YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKE  177 (275)
T ss_dssp             HHHHHHHHCTTCTHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHhcCccccHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc
Confidence            9988743        233445666 67888888876653    232222222333345568888888877443       


Q ss_pred             -------------CChHHHHHHHHHcchhhHHhhhhhhcC---CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        131 -------------KCYQDAFNLSQQHKKLHEFGKFLLEED---EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 -------------g~~~~A~~la~~~~~~~~~~~~~~l~~---~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                                   +.+++|+..+.+         ++...+   +..+..+..+|..+...|++++|
T Consensus       178 ~~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  234 (275)
T 1xnf_A          178 QWGWNIVEFYLGNISEQTLMERLKA---------DATDNTSLAEHLSETNFYLGKYYLSLGDLDSA  234 (275)
T ss_dssp             STHHHHHHHHTTSSCHHHHHHHHHH---------HCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hHHHHHHHHHHHhcCHHHHHHHHHH---------HhcccccccccccHHHHHHHHHHHHcCCHHHH
Confidence                         222333333221         111111   11257889999999999999988

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.81  E-value=6.4e-07  Score=72.09  Aligned_cols=26  Identities=12%  Similarity=0.174  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ..+..+|..+...|++++|+++|.++
T Consensus        72 ~~~~~l~~~~~~~~~~~~A~~~~~~~   97 (359)
T 3ieg_A           72 AARLQRGHLLLKQGKLDEAEDDFKKV   97 (359)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            33344444444444444444444433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.81  E-value=1.3e-07  Score=77.49  Aligned_cols=153  Identities=8%  Similarity=-0.031  Sum_probs=93.2

Q ss_pred             HHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH------------------HHHHH
Q psy12373         27 TCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD------------------NVVRV   83 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~------------------~av~l   83 (198)
                      .+|...|+++.|...+.+     ..+...+..+|..+...|++++|+++|.++-...                  ....+
T Consensus       107 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~  186 (365)
T 4eqf_A          107 ITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKS  186 (365)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-----------------
T ss_pred             HHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHH
Confidence            344455666666555542     2356777888888888888888888888874321                  11345


Q ss_pred             HhhccCCHHHHHHHHHh----cC---CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--------hHHHHHHHHHcchhhH
Q psy12373         84 DLDHLNDIRHAVDIVKA----KK---CTEGAKRIADYCNKHGDFGAAIHFLILSKC--------YQDAFNLSQQHKKLHE  148 (198)
Q Consensus        84 ~~~~~~~~~~a~~l~~~----~~---~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~--------~~~A~~la~~~~~~~~  148 (198)
                      +. ..|++++|..+.++    .|   ++.....+|..+...|++++|+..|.++-.        |..-..++...|.++.
T Consensus       187 ~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~  265 (365)
T 4eqf_A          187 PV-DSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEE  265 (365)
T ss_dssp             ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             Hh-hhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHH
Confidence            55 67788888776643    23   355566788888888999888888876532        1111222333444332


Q ss_pred             Hhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        149 FGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       149 ~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ......  +. .+..+..+..++..|...|++.+|
T Consensus       266 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  300 (365)
T 4eqf_A          266 AVEAYTRALEIQPGFIRSRYNLGISCINLGAYREA  300 (365)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHH
Confidence            222211  22 344588888888888888888888

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.79  E-value=5.9e-07  Score=75.28  Aligned_cols=18  Identities=17%  Similarity=0.335  Sum_probs=8.3

Q ss_pred             HHHHHHHHHHhCCChhhH
Q psy12373        163 ELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       163 ~~~~~A~~~e~~g~~~~A  180 (198)
                      .+..++..+...|++++|
T Consensus       297 ~~~~l~~~~~~~g~~~~A  314 (450)
T 2y4t_A          297 SKERICHCFSKDEKPVEA  314 (450)
T ss_dssp             HHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHCCCHHHH
Confidence            344444444444444444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=98.79  E-value=8.6e-07  Score=74.27  Aligned_cols=123  Identities=15%  Similarity=0.094  Sum_probs=83.7

Q ss_pred             chHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |.+++|.++|.++=     +   +-....+|...|+++.|...+.+     .++...+..+|..+...|++++|+++|.+
T Consensus        40 g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  119 (450)
T 2y4t_A           40 GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKK  119 (450)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55666666665431     1   12334456666777777666653     23677888899999999999999999998


Q ss_pred             hcCH-----------HHH------------HHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHH
Q psy12373         74 AEDY-----------DNV------------VRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIH  125 (198)
Q Consensus        74 a~~~-----------~~a------------v~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~  125 (198)
                      +-..           ...            ..++. ..|++++|..+..+    .| ++.....+|..+...|++++|+.
T Consensus       120 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  198 (450)
T 2y4t_A          120 VLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAF-GSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAIS  198 (450)
T ss_dssp             HHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCGGGGHH
T ss_pred             HHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHCCCHHHHHH
Confidence            8431           111            23366 67899998877653    22 34555678888999999988888


Q ss_pred             HHHHc
Q psy12373        126 FLILS  130 (198)
Q Consensus       126 ~y~~a  130 (198)
                      .|.++
T Consensus       199 ~~~~~  203 (450)
T 2y4t_A          199 DLKAA  203 (450)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88765

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.76  E-value=1.3e-06  Score=68.84  Aligned_cols=148  Identities=11%  Similarity=0.046  Sum_probs=84.1

Q ss_pred             ccCHHHHHhhhhc---cCChHHHHHHHHHHHH----cCCHHHHHHHHHHhc---CHH---HHHHHHhhc----cCCHHHH
Q psy12373         32 LKNWTKIGQLLPH---IKSATTFIQYAKAKEA----MGSYRESVGAYERAE---DYD---NVVRVDLDH----LNDIRHA   94 (198)
Q Consensus        32 ~~~~~~a~~l~~~---~~~~~l~~~~A~~~e~----~g~~~~A~~~Y~ka~---~~~---~av~l~~~~----~~~~~~a   94 (198)
                      .+++++|.....+   ..++..+..+|..+..    .+++++|+++|.++-   +..   ..-.++. .    .+++++|
T Consensus        55 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~-~~~~~~~~~~~A  133 (273)
T 1ouv_A           55 EKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYH-DGKVVTRDFKKA  133 (273)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHH-cCCCcccCHHHH
Confidence            6666665555542   3466777777777777    777777777777763   222   2223344 4    6777777


Q ss_pred             HHHHH---hcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHcC---ChHHHHHHH---HH----cchhhHHhhhhh-hc
Q psy12373         95 VDIVK---AKKCTEGAKRIADYCNK----HGDFGAAIHFLILSK---CYQDAFNLS---QQ----HKKLHEFGKFLL-EE  156 (198)
Q Consensus        95 ~~l~~---~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~ag---~~~~A~~la---~~----~~~~~~~~~~~~-l~  156 (198)
                      +...+   +..++.....++..+..    .+++++|+.+|.++-   ...-...++   ..    .+.++....... ..
T Consensus       134 ~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~  213 (273)
T 1ouv_A          134 VEYFTKACDLNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKAC  213 (273)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHH
Confidence            66544   23455556667777776    777777777777652   222222222   22    222222221111 11


Q ss_pred             CCCCHHHHHHHHHHHHh----CCChhhH
Q psy12373        157 DEPNPVELKRLAIHFEE----DKGVLTS  180 (198)
Q Consensus       157 ~~~~~~~~~~~A~~~e~----~g~~~~A  180 (198)
                      ...++..+..++..|..    .+++++|
T Consensus       214 ~~~~~~a~~~l~~~~~~g~~~~~~~~~A  241 (273)
T 1ouv_A          214 ELENGGGCFNLGAMQYNGEGVTRNEKQA  241 (273)
T ss_dssp             HTTCHHHHHHHHHHHHTTSSSSCCSTTH
T ss_pred             hCCCHHHHHHHHHHHHcCCCcccCHHHH
Confidence            22347777777777777    7777777

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=98.72  E-value=1.8e-06  Score=69.36  Aligned_cols=161  Identities=14%  Similarity=0.012  Sum_probs=104.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR   82 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~   82 (198)
                      .-+..|...|+++.|+++|.++-      .+  ..+++..+..+|..+...|++++|+++|.++-.        +.....
T Consensus         8 ~~~~~~~~~g~~~~A~~~~~~~l------~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   79 (359)
T 3ieg_A            8 ELGKKLLAAGQLADALSQFHAAV------DG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH------hh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            44566777788888888876542      11  234678899999999999999999999998743        244456


Q ss_pred             HHhhccCCHHHHHHHHHhc----C---C-HHHHHHH------------HHHHHhcCCHHHHHHHHHHcCC----hHHH--
Q psy12373         83 VDLDHLNDIRHAVDIVKAK----K---C-TEGAKRI------------ADYCNKHGDFGAAIHFLILSKC----YQDA--  136 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~~----~---~-~~~~~~~------------A~~~~~~g~~~~Av~~y~~ag~----~~~A--  136 (198)
                      ++. ..|++++|....++.    |   + +.....+            |..+...|++++|++.|.++-.    ...+  
T Consensus        80 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  158 (359)
T 3ieg_A           80 LLL-KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRE  158 (359)
T ss_dssp             HHH-HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHH-HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHH
Confidence            666 789999998877642    3   1 2222233            6778889999998888877521    1111  


Q ss_pred             --HHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        137 --FNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       137 --~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                        ..+....+.++...+.+.  +. .+.++..+..+|..+...|++++|
T Consensus       159 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  207 (359)
T 3ieg_A          159 LRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELS  207 (359)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence              122233333332222210  22 345678888888888888888777

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.69  E-value=1.6e-06  Score=70.55  Aligned_cols=52  Identities=10%  Similarity=0.047  Sum_probs=27.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVK   99 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~   99 (198)
                      ++..+..+|..+...|++++|+++|.++-.        +.....++. ..|++++|....+
T Consensus        97 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~  156 (368)
T 1fch_A           97 HMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFT-NESLQRQACEILR  156 (368)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHH
Confidence            445555566666666666666666665421        122333444 4555655555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=98.68  E-value=1.5e-06  Score=71.03  Aligned_cols=161  Identities=7%  Similarity=-0.057  Sum_probs=101.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR   82 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~   82 (198)
                      .-+..|.+.|++++|+++|.++      ..+  ..++...+..+|..+...|++++|+++|.++-.        +.....
T Consensus        70 ~~~~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~  141 (365)
T 4eqf_A           70 EEGLKRLKEGDLPVTILFMEAA------ILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAV  141 (365)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH------HHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3455666667777777777544      111  234678899999999999999999999998742        234456


Q ss_pred             HHhhccCCHHHHHHHHHhcC--CHHH-------------HHHHHHHHHhcCCHHHHHHHHHHcCCh------HHH----H
Q psy12373         83 VDLDHLNDIRHAVDIVKAKK--CTEG-------------AKRIADYCNKHGDFGAAIHFLILSKCY------QDA----F  137 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~~~--~~~~-------------~~~~A~~~~~~g~~~~Av~~y~~ag~~------~~A----~  137 (198)
                      ++. ..|++++|..+.++.-  .|..             ...++..+...|++++|+.+|.++-..      ..+    .
T Consensus       142 ~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~  220 (365)
T 4eqf_A          142 SYT-NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLG  220 (365)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHH
T ss_pred             HHH-ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHH
Confidence            666 7899999988765421  1111             113477888899999999999887321      111    2


Q ss_pred             HHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        138 NLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       138 ~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .+....|.++...+.+.  +. .+.++..+..++..|...|++++|
T Consensus       221 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A  266 (365)
T 4eqf_A          221 VLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEA  266 (365)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            22333444433222221  22 345688999999999999999998

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=98.68  E-value=1.1e-06  Score=67.49  Aligned_cols=155  Identities=13%  Similarity=0.108  Sum_probs=89.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------
Q psy12373          9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY-----------   77 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------   77 (198)
                      +..-+..|...|++++|+++|.++      ..+  . +++..+..+|..+...|++++|+++|.++-..           
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a------~~~--~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~   78 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKA------WEL--H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVI   78 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHH--S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHH------HHh--h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHH
Confidence            445566777788888888888655      222  2 66788999999999999999999999987321           


Q ss_pred             ----HHHHHHHhhccCCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC--hHHH------HHHHH
Q psy12373         78 ----DNVVRVDLDHLNDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKC--YQDA------FNLSQ  141 (198)
Q Consensus        78 ----~~av~l~~~~~~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~--~~~A------~~la~  141 (198)
                          .....++. ..|++++|.....+    .+.       +..+...|++++|+..|.++-.  +..+      ..+..
T Consensus        79 ~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  150 (258)
T 3uq3_A           79 SKSFARIGNAYH-KLGDLKKTIEYYQKSLTEHRT-------ADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYF  150 (258)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HcccHHHHHHHHHHHHhcCch-------hHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHH
Confidence                11222333 44555555444332    111       2223334444555555444321  1111      12223


Q ss_pred             HcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        142 QHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       142 ~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..+.++.....+.  +. .+.++..+..+|..|...|++++|
T Consensus       151 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A  192 (258)
T 3uq3_A          151 TKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA  192 (258)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHH
Confidence            3344432222221  22 345688888899988889998888

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.67  E-value=1.4e-06  Score=69.45  Aligned_cols=154  Identities=8%  Similarity=-0.087  Sum_probs=98.0

Q ss_pred             HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHH------------
Q psy12373         26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNV------------   80 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~a------------   80 (198)
                      ..+|...|+++.|...+.+     ..+...+..+|..+...|++++|+++|.++-..        ...            
T Consensus        62 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (327)
T 3cv0_A           62 GLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNV  141 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC----------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHH
Confidence            3455566777776655542     236678888899999999999999998886321        000            


Q ss_pred             --HH-HHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH----HHHHHHcc
Q psy12373         81 --VR-VDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC----YQDA----FNLSQQHK  144 (198)
Q Consensus        81 --v~-l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~~~  144 (198)
                        .. ++. ..|++++|..+..+    .| ++.....+|..+...|++++|+..|.++-.    ...+    ..+....+
T Consensus       142 ~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  220 (327)
T 3cv0_A          142 QSEDFFFA-APNEYRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGN  220 (327)
T ss_dssp             ----CCTT-SHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHhHHHH-HcccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcC
Confidence              11 255 66788888776653    22 345566788899999999999988876522    1111    22233444


Q ss_pred             hhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        145 KLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       145 ~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++.....+.  +. .+..+..+..++..+...|++++|
T Consensus       221 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A  259 (327)
T 3cv0_A          221 RPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLA  259 (327)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHH
Confidence            4432222221  22 345688899999999999999888

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.66  E-value=2.5e-06  Score=72.96  Aligned_cols=166  Identities=13%  Similarity=0.114  Sum_probs=107.2

Q ss_pred             HHHHHcCCHHHHHHHHHHc--------------------cCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHH
Q psy12373         14 TLYESAGNYEKAATCYIQL--------------------KNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESV   68 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~--------------------~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~   68 (198)
                      .+|...|++++|+++|.++                    |+++.+...+.+     ..++.++..+|..+...|++++|+
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  330 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAK  330 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            3444556666666655543                    445555444432     236778888899999999999999


Q ss_pred             HHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHH
Q psy12373         69 GAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQD  135 (198)
Q Consensus        69 ~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~  135 (198)
                      ++|.++-.        +.....++. ..|++++|..+.++    .| ++.....+|..+...|++++|+..|.++-....
T Consensus       331 ~~~~~a~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~  409 (537)
T 3fp2_A          331 EDFQKAQSLNPENVYPYIQLACLLY-KQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEE  409 (537)
T ss_dssp             HHHHHHHHHCTTCSHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCC
Confidence            99988742        234456666 78999998877653    22 344556788999999999999998887532211


Q ss_pred             H--------------HHHHHHc----------chhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        136 A--------------FNLSQQH----------KKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       136 A--------------~~la~~~----------~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      -              ..+....          +.++.....+.  +. .+..+..+..+|..|...|++++|
T Consensus       410 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A  481 (537)
T 3fp2_A          410 VQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEA  481 (537)
T ss_dssp             HCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             cchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHH
Confidence            0              0122222          33322222211  22 346789999999999999999998

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=98.65  E-value=7.3e-07  Score=68.71  Aligned_cols=131  Identities=16%  Similarity=0.128  Sum_probs=94.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY  113 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~  113 (198)
                      ++..+..+|..+...|++++|+..|.++-.        +...-.++. ..|++++|....++    .| ++.....+|..
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~-~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~   82 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQL-KLGLVNPALENGKTLVARTPRYLGGYMVLSEA   82 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            567888999999999999999999998743        234445566 78999999877653    33 34556678999


Q ss_pred             HHhc-----------CCHHHHHHHHHHcCC----hHHH-H---HHHHHcchhhH----HhhhhhhcCCCCHHHHHHHHHH
Q psy12373        114 CNKH-----------GDFGAAIHFLILSKC----YQDA-F---NLSQQHKKLHE----FGKFLLEEDEPNPVELKRLAIH  170 (198)
Q Consensus       114 ~~~~-----------g~~~~Av~~y~~ag~----~~~A-~---~la~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~  170 (198)
                      +...           |++++|+..|.++-.    ...+ +   .+....|.++.    +..++.+.  .++..+..+|..
T Consensus        83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~  160 (217)
T 2pl2_A           83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL  160 (217)
T ss_dssp             HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence            9988           999999998877632    1222 1   12233344332    23333344  789999999999


Q ss_pred             HHhCCChhhH
Q psy12373        171 FEEDKGVLTS  180 (198)
Q Consensus       171 ~e~~g~~~~A  180 (198)
                      +...|++++|
T Consensus       161 ~~~~g~~~~A  170 (217)
T 2pl2_A          161 YLSMGRLDEA  170 (217)
T ss_dssp             HHHHTCHHHH
T ss_pred             HHHcCCHHHH
Confidence            9999999988

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=98.65  E-value=1.2e-06  Score=64.91  Aligned_cols=124  Identities=11%  Similarity=0.102  Sum_probs=87.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY  113 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~  113 (198)
                      ++.++..+|..+...|++++|+++|.++=.        +.....++. ..|++++|......    .+ .+.....++..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   82 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYM-DIGLPNDAIESLKKFVVLDTTSAEAYYILGSA   82 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            578899999999999999999999999832        123344555 67888887765543    22 24444556677


Q ss_pred             HHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-------------
Q psy12373        114 CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS-------------  180 (198)
Q Consensus       114 ~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A-------------  180 (198)
                      +...++++.|++.+.++-.                      + .+..+..+..+|..|...|++++|             
T Consensus        83 ~~~~~~~~~a~~~~~~a~~----------------------~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~  139 (184)
T 3vtx_A           83 NFMIDEKQAAIDALQRAIA----------------------L-NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPG  139 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             HHHcCCHHHHHHHHHHHHH----------------------h-CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcch
Confidence            7777777776666544311                      1 234677888888888888888888             


Q ss_pred             ------------HhcCChhhHHhhhh
Q psy12373        181 ------------FRVSQQSRAMPCSS  194 (198)
Q Consensus       181 ------------~~ag~~~~Al~l~~  194 (198)
                                  .+.|++++|++.+.
T Consensus       140 ~~~~~~~lg~~~~~~g~~~~A~~~~~  165 (184)
T 3vtx_A          140 FIRAYQSIGLAYEGKGLRDEAVKYFK  165 (184)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence                        67788888887764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.65  E-value=1.4e-05  Score=62.91  Aligned_cols=159  Identities=11%  Similarity=0.087  Sum_probs=111.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHH----cCCHHHHHHHHHHhcC---H---HHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEA----MGSYRESVGAYERAED---Y---DNV   80 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~----~g~~~~A~~~Y~ka~~---~---~~a   80 (198)
                      .-+..|...|++++|+++|.++-      +    ..++..+..+|..+..    .|++++|+++|.++-+   .   ...
T Consensus        11 ~lg~~~~~~~~~~~A~~~~~~a~------~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l   80 (273)
T 1ouv_A           11 GLGAKSYKEKDFTQAKKYFEKAC------D----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH------H----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHH------H----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            34567777888888888886542      1    3567888999999999    9999999999998743   2   223


Q ss_pred             HHHHhhc----cCCHHHHHHHHH---hcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHcCCh---HHHHHHH---HH-
Q psy12373         81 VRVDLDH----LNDIRHAVDIVK---AKKCTEGAKRIADYCNK----HGDFGAAIHFLILSKCY---QDAFNLS---QQ-  142 (198)
Q Consensus        81 v~l~~~~----~~~~~~a~~l~~---~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~ag~~---~~A~~la---~~-  142 (198)
                      -.++. .    .+++++|+...+   +..++.....+|..+..    .+++++|+++|.++-..   .--..++   .. 
T Consensus        81 g~~~~-~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~  159 (273)
T 1ouv_A           81 GNLYY-SGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLNDGDGCTILGSLYDAG  159 (273)
T ss_dssp             HHHHH-HTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHh-CCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcCcHHHHHHHHHHHHcC
Confidence            34555 5    799999987665   34567778889999999    99999999999886432   2122222   22 


Q ss_pred             ---cchhhHHhhhhh-hcCCCCHHHHHHHHHHHHh----CCChhhH
Q psy12373        143 ---HKKLHEFGKFLL-EEDEPNPVELKRLAIHFEE----DKGVLTS  180 (198)
Q Consensus       143 ---~~~~~~~~~~~~-l~~~~~~~~~~~~A~~~e~----~g~~~~A  180 (198)
                         .+.++....... .....++..+..++..|..    .+++++|
T Consensus       160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A  205 (273)
T 1ouv_A          160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEA  205 (273)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHH
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHH
Confidence               233322222211 1123578899999999999    9999988

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=98.65  E-value=1.1e-06  Score=67.14  Aligned_cols=133  Identities=12%  Similarity=0.061  Sum_probs=83.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY  113 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~  113 (198)
                      +...+..+|..+...|++++|+++|.++-..        .....++. ..|++++|..+.++    .+ ++.....+|..
T Consensus        56 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~  134 (243)
T 2q7f_A           56 DAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYV-VKEMYKEAKDMFEKALRAGMENGDLFYMLGTV  134 (243)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5667777788888888888888888776421        23345555 67888887766543    22 34555567777


Q ss_pred             HHhcCCHHHHHHHHHHcCC----hHHH----HHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        114 CNKHGDFGAAIHFLILSKC----YQDA----FNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       114 ~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +...|++++|+.+|.++-.    ...+    ..++...+.++...+.+.  +. .+..+..+..++..+...|++++|
T Consensus       135 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  212 (243)
T 2q7f_A          135 LVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKA  212 (243)
T ss_dssp             HHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHH
Confidence            8888888888887776522    1111    112233333332222211  12 345688999999999999999988

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.64  E-value=1.6e-06  Score=67.04  Aligned_cols=158  Identities=11%  Similarity=-0.044  Sum_probs=98.3

Q ss_pred             HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHh
Q psy12373         14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDL   85 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~   85 (198)
                      ..|...|++++|+++|.++      ..+  ...+...+..+|..+...|++++|+++|.++-.        +.....++.
T Consensus        45 ~~~~~~~~~~~A~~~~~~a------l~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~  116 (252)
T 2ho1_A           45 LGYLQRGNTEQAKVPLRKA------LEI--DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLY  116 (252)
T ss_dssp             HHHHHTTCTGGGHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHHH------Hhc--CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHH
Confidence            3444455555555554332      111  223667888889999999999999999987642        233455666


Q ss_pred             hccCCHHHHHHHHHhc------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH----HHHHHHcchhhHHh
Q psy12373         86 DHLNDIRHAVDIVKAK------KC-TEGAKRIADYCNKHGDFGAAIHFLILSKC----YQDA----FNLSQQHKKLHEFG  150 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~------~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~~~~~~~~~  150 (198)
                       ..|++++|..+..+.      +. +.....+|..+...|++++|+.+|.++-.    ...+    ..++...+.++...
T Consensus       117 -~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  195 (252)
T 2ho1_A          117 -EQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPAR  195 (252)
T ss_dssp             -HTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             -HHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHH
Confidence             778999988877643      11 23344678888888999888888877532    1111    22233444443322


Q ss_pred             hhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        151 KFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       151 ~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..+.  +. .+..+..+..++..+...|++++|
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A  228 (252)
T 2ho1_A          196 QYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTA  228 (252)
T ss_dssp             HHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHH
Confidence            2221  22 345678888889988888888888

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=98.63  E-value=8.5e-07  Score=72.21  Aligned_cols=154  Identities=10%  Similarity=-0.058  Sum_probs=102.6

Q ss_pred             HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH----------------------
Q psy12373         26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD----------------------   78 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~----------------------   78 (198)
                      ..+|...|+++.|...+.+     .+++..+..+|..+...|++++|+++|.++-...                      
T Consensus       105 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (368)
T 1fch_A          105 GTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPS  184 (368)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC--------------
T ss_pred             HHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHH
Confidence            3445566777777666542     2377889999999999999999999999863210                      


Q ss_pred             -HHHHHHhhccCCHHHHHHHHHh----cCC---HHHHHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH----HHHHHH
Q psy12373         79 -NVVRVDLDHLNDIRHAVDIVKA----KKC---TEGAKRIADYCNKHGDFGAAIHFLILSKC----YQDA----FNLSQQ  142 (198)
Q Consensus        79 -~av~l~~~~~~~~~~a~~l~~~----~~~---~~~~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~  142 (198)
                       ..+..+. ..|++++|..+.++    .|+   +.....+|..+...|++++|+.+|.++-.    ...+    ..++..
T Consensus       185 ~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  263 (368)
T 1fch_A          185 KRILGSLL-SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLAN  263 (368)
T ss_dssp             -CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHh-hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHH
Confidence             0233444 56788888776653    233   45566789999999999999998877532    1111    222334


Q ss_pred             cchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        143 HKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       143 ~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .|.++.......  +. .+..+..+..+|..|...|++++|
T Consensus       264 ~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A  304 (368)
T 1fch_A          264 GNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREA  304 (368)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            444432222221  22 345688999999999999999888

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=98.60  E-value=2.2e-06  Score=64.88  Aligned_cols=100  Identities=10%  Similarity=-0.011  Sum_probs=87.6

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH   87 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~   87 (198)
                      +++.=++.-...|+++-|.+||.+++++.++.=|.....+.+-+..+++..+..|++..|..+|.-.||++.+|++++ .
T Consensus        36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~-~  114 (177)
T 3mkq_B           36 TWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFA-E  114 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHH-H
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHH-H
Confidence            344555666788999999999999999999877777777889999999999999999999999999999999999999 8


Q ss_pred             cCCHHHHHHHHHhcCCHHHHH
Q psy12373         88 LNDIRHAVDIVKAKKCTEGAK  108 (198)
Q Consensus        88 ~~~~~~a~~l~~~~~~~~~~~  108 (198)
                      .|+|.+|.-+++.+...+...
T Consensus       115 ~~r~~eA~~~A~t~g~~~~a~  135 (177)
T 3mkq_B          115 GGSLPLAYAVAKANGDEAAAS  135 (177)
T ss_dssp             TTCHHHHHHHHHHTTCHHHHH
T ss_pred             CCChHHHHHHHHHcCcHHHHH
Confidence            899999999999876655444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.59  E-value=3.8e-06  Score=71.22  Aligned_cols=68  Identities=15%  Similarity=0.295  Sum_probs=50.2

Q ss_pred             chHHHHHHHHHHcCC-------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373          7 TLDRGKWTLYESAGN-------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~-------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      |+|++|.++|.++=.       +-....+|...|+++.|...+.+     .++...+..+|..+...|++++|+..|.++
T Consensus        20 g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~   99 (514)
T 2gw1_A           20 KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL   99 (514)
T ss_dssp             SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            667777777765521       33445667777888887766653     236778889999999999999999999876

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.59  E-value=8.8e-06  Score=57.52  Aligned_cols=146  Identities=11%  Similarity=0.095  Sum_probs=98.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      ..-+..|...|++++|++.|.++-.      +.....+    ...+..+|..+...|++++|+++|.++      +++..
T Consensus        13 ~~l~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------~~~~~   80 (164)
T 3ro3_A           13 GNLGNTHYLLGNFRDAVIAHEQRLL------IAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKT------LLLAR   80 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH------HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHH------HHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHH
Confidence            3456677788888888888876533      3323232    246778899999999999999999888      77776


Q ss_pred             hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHH
Q psy12373         86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELK  165 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~  165 (198)
                       ..++....         ......+|..+...|++++|+.+|.+      |++++...+..           ...+..+.
T Consensus        81 -~~~~~~~~---------~~~~~~l~~~~~~~~~~~~A~~~~~~------a~~~~~~~~~~-----------~~~~~~~~  133 (164)
T 3ro3_A           81 -QLKDRAVE---------AQSCYSLGNTYTLLQDYEKAIDYHLK------HLAIAQELKDR-----------IGEGRACW  133 (164)
T ss_dssp             -HTTCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTCH-----------HHHHHHHH
T ss_pred             -HhCCcHHH---------HHHHHHHHHHHHHHhhHHHHHHHHHH------HHHHHHHccch-----------HhHHHHHH
Confidence             44443321         12244678888899999999988754      45555544322           11246678


Q ss_pred             HHHHHHHhCCChhhHHhcCChhhHHhhhhhc
Q psy12373        166 RLAIHFEEDKGVLTSFRVSQQSRAMPCSSGH  196 (198)
Q Consensus       166 ~~A~~~e~~g~~~~A~~ag~~~~Al~l~~~~  196 (198)
                      .+|..+...|++++|...  +.+|++++.+.
T Consensus       134 ~la~~~~~~g~~~~A~~~--~~~a~~~~~~~  162 (164)
T 3ro3_A          134 SLGNAYTALGNHDQAMHF--AEKHLEISREV  162 (164)
T ss_dssp             HHHHHHHHHTCHHHHHHH--HHHHHHHHTTC
T ss_pred             HHHHHHHHccCHHHHHHH--HHHHHHHHHHh
Confidence            899999999999888221  45566655443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=98.56  E-value=1.2e-05  Score=62.04  Aligned_cols=124  Identities=14%  Similarity=0.060  Sum_probs=90.9

Q ss_pred             chHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |++++|.++|.++=     +   +.....+|...|+++.|...+.+     ..+..++..+|..+...|++++|+++|.+
T Consensus        51 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  130 (252)
T 2ho1_A           51 GNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLE  130 (252)
T ss_dssp             TCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            56666766666541     1   22345567777788777666643     23678888999999999999999999999


Q ss_pred             hcC----H------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         74 AED----Y------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        74 a~~----~------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                      +-.    +      .....++. ..|++++|..+.++    .+ ++.....+|..+...|++++|+.+|.++-
T Consensus       131 ~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  202 (252)
T 2ho1_A          131 ASQDTLYPERSRVFENLGLVSL-QMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFA  202 (252)
T ss_dssp             HTTCTTCTTHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhCccCcccHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            854    1      33455666 78999999887654    23 35566678999999999999999998763

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=98.55  E-value=9.2e-06  Score=64.64  Aligned_cols=153  Identities=10%  Similarity=0.013  Sum_probs=105.4

Q ss_pred             HHHHHcc-CHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHH
Q psy12373         27 TCYIQLK-NWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIR   92 (198)
Q Consensus        27 ~~y~~~~-~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~   92 (198)
                      .+|...| +++.+...+.+     ..++..+..+|..+...|++++|+++|.++-.        +.....++. ..|+++
T Consensus        98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~  176 (330)
T 3hym_B           98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYG-LTNNSK  176 (330)
T ss_dssp             HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHH-HTTCHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHH-HHhhHH
Confidence            3445556 77776665542     22677888999999999999999999998753        234455666 789999


Q ss_pred             HHHHHHHhc----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH-------------HH----HHHHHHcchhhHHh
Q psy12373         93 HAVDIVKAK----K-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ-------------DA----FNLSQQHKKLHEFG  150 (198)
Q Consensus        93 ~a~~l~~~~----~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~-------------~A----~~la~~~~~~~~~~  150 (198)
                      +|..+.++.    | ++.....+|..+...|++++|+.+|.++-...             .+    ..+....|.++...
T Consensus       177 ~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  256 (330)
T 3hym_B          177 LAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL  256 (330)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence            998877642    2 34556678999999999999999887764321             11    22233444443322


Q ss_pred             hhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        151 KFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       151 ~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..+.  +. .+..+..+..+|..+...|++.+|
T Consensus       257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  289 (330)
T 3hym_B          257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENA  289 (330)
T ss_dssp             HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhhCccchHHHHHHHHHHHHhccHHHH
Confidence            2221  22 345788999999999999999888

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.55  E-value=4.6e-06  Score=60.54  Aligned_cols=138  Identities=14%  Similarity=0.063  Sum_probs=93.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVR   82 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~   82 (198)
                      .-+..|...|+++.|+.+|.++-..        ...+...+..+|..+...|++++|+++|.++-..        .....
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~   84 (186)
T 3as5_A           13 DKGISHAKAGRYSQAVMLLEQVYDA--------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGL   84 (186)
T ss_dssp             HHHHHHHHHTCHHHHHHHHTTTCCT--------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHh--------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence            3455556666666666666543221        1236778889999999999999999999987422        23445


Q ss_pred             HHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcC
Q psy12373         83 VDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED  157 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~  157 (198)
                      ++. ..|++++|..+..+    .| ++.....+|..+...|++++|+..|.++-.                      + .
T Consensus        85 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~----------------------~-~  140 (186)
T 3as5_A           85 TYV-QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALG----------------------L-R  140 (186)
T ss_dssp             HHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------H-C
T ss_pred             HHH-HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHh----------------------c-C
Confidence            566 67899988876653    22 344445667777777777777666544311                      1 1


Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        158 EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       158 ~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.++..+..+|..+...|++++|
T Consensus       141 ~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A          141 PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             ccchHHHHHHHHHHHHcCCHHHH
Confidence            34578889999999999999888

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.54  E-value=1.1e-05  Score=60.61  Aligned_cols=161  Identities=12%  Similarity=0.005  Sum_probs=103.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR   82 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~   82 (198)
                      .-+..|...|+++.|+++|.++      .++  ...+...+..+|..+...|++++|+++|.++-.        +.....
T Consensus        13 ~~~~~~~~~~~~~~A~~~~~~~------~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~   84 (225)
T 2vq2_A           13 QLAMEYMRGQDYRQATASIEDA------LKS--DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHH------HHh--CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence            4456677777777777777543      111  223567888889999999999999999988742        234455


Q ss_pred             HHhhcc-CCHHHHHHHHHhc------CC-HHHHHHHHHHHHhcCCHHHHHHHHHHcCCh----HHH----HHHHHHcchh
Q psy12373         83 VDLDHL-NDIRHAVDIVKAK------KC-TEGAKRIADYCNKHGDFGAAIHFLILSKCY----QDA----FNLSQQHKKL  146 (198)
Q Consensus        83 l~~~~~-~~~~~a~~l~~~~------~~-~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~----~~A----~~la~~~~~~  146 (198)
                      ++. .. |++++|..+.++.      +. ......+|..+...|++++|+.+|.++-..    ..+    ..+....|.+
T Consensus        85 ~~~-~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLC-GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHH-TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred             HHH-HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence            666 78 8999988776532      11 334456788888899999888888765321    111    2222333443


Q ss_pred             hHHh----hhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        147 HEFG----KFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       147 ~~~~----~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +...    .++.+.+..++..+...+..+...|+++.|
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  201 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAA  201 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHH
Confidence            3222    221223325777788888888888888777

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.52  E-value=3.6e-06  Score=76.74  Aligned_cols=137  Identities=16%  Similarity=0.138  Sum_probs=99.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHH
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRV   83 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l   83 (198)
                      -+.+|.+.|++++|+++|.++      .++  .-+....+..+|..+...|++++|+++|.++=.        +...-.+
T Consensus        15 LG~~~~~~G~~~eAi~~~~kA------l~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A           15 LANIKREQGNIEEAVRLYRKA------LEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH------HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            467788889999998888654      333  334678899999999999999999999998742        1233344


Q ss_pred             HhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCC
Q psy12373         84 DLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDE  158 (198)
Q Consensus        84 ~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~  158 (198)
                      +. .+|++++|....++    .| .......+|..+...|++++|+..|.++=      +                + .+
T Consensus        87 l~-~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al------~----------------l-~P  142 (723)
T 4gyw_A           87 LK-EMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTAL------K----------------L-KP  142 (723)
T ss_dssp             HH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH------H----------------H-CS
T ss_pred             HH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH------H----------------h-CC
Confidence            55 67888888765543    22 34455577888888888887777765431      1                2 24


Q ss_pred             CCHHHHHHHHHHHHhCCChhhH
Q psy12373        159 PNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       159 ~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..++.+..++..+...|++++|
T Consensus       143 ~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A          143 DFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             CCHHHHHHHHHHHHHTTCCTTH
T ss_pred             CChHHHhhhhhHHHhcccHHHH
Confidence            5688899999999999999988

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=98.50  E-value=3.1e-06  Score=72.36  Aligned_cols=47  Identities=17%  Similarity=0.418  Sum_probs=33.1

Q ss_pred             HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373         26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE   72 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~   72 (198)
                      ..+|...|+++.|.+.+.+     .++...+..+|..+...|++++|++.|.
T Consensus        66 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~  117 (537)
T 3fp2_A           66 SACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLS  117 (537)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4455566667766665543     2366777888888888888888888774

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.47  E-value=6.6e-06  Score=68.10  Aligned_cols=81  Identities=19%  Similarity=0.151  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------------HHHHHHHhhccCC-----------------HHHHHHH
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY--------------DNVVRVDLDHLND-----------------IRHAVDI   97 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~-----------------~~~a~~l   97 (198)
                      .++..+|..+...|++++|+++|.++-..              .....++. ..|+                 +++|...
T Consensus       127 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~~~~~~~~~~~a~~~~~~A~~~  205 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYH-AKGKHLGQRNPGKFGDDVKEALTRAVEF  205 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHH-HcCcccccccchhhhhhhhHHHHHHHHH
Confidence            45566777788888888887777765432              11222333 4556                 6666554


Q ss_pred             HHh-------cCCHH----HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         98 VKA-------KKCTE----GAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        98 ~~~-------~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ..+       .+++.    ....+|..+...|++++|+.+|.++
T Consensus       206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  249 (411)
T 4a1s_A          206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQER  249 (411)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            332       22211    2234667777777777777766655

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.47  E-value=6.2e-06  Score=68.31  Aligned_cols=125  Identities=13%  Similarity=0.078  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------------HHHHHHHhhccCCHHHHHHHHHh-------cCC-HH-
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY--------------DNVVRVDLDHLNDIRHAVDIVKA-------KKC-TE-  105 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~~~-~~-  105 (198)
                      ..+..+|..+...|++++|+++|.++-+.              ...-.++. ..|++++|....++       ..+ +. 
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~g~~~~A~~~~~~al~~~~~~~~~~~~  263 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKN-SQSQYEDAIPYFKRAIAVFEESNILPSL  263 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCGGGH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhccchhH
Confidence            46778899999999999999999887532              23344455 67899988765542       233 22 


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchh-------------------hHHhhhhhh----c-CCC
Q psy12373        106 --GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKL-------------------HEFGKFLLE----E-DEP  159 (198)
Q Consensus       106 --~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~-------------------~~~~~~~~l----~-~~~  159 (198)
                        ....+|..+...|++++|+++|.++-      +++...+..                   +.+.+++.+    . .+.
T Consensus       264 ~~~~~~l~~~~~~~g~~~~A~~~~~~al------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~  337 (383)
T 3ulq_A          264 PQAYFLITQIHYKLGKIDKAHEYHSKGM------AYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYAD  337 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH------HHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHH
Confidence              34468999999999999999987653      333222211                   112222211    0 112


Q ss_pred             CHHHHHHHHHHHHhCCChhhH
Q psy12373        160 NPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       160 ~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..+.+..+|..|...|++++|
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A  358 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKA  358 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHH
Confidence            245677788888888888887

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.47  E-value=4.6e-05  Score=65.40  Aligned_cols=83  Identities=12%  Similarity=0.090  Sum_probs=40.8

Q ss_pred             ChHHHHHHHHHHHH----cCCHHHHHHHHHHhc---CHHHHH---HHHhhc----cCCHHHHHHHHHh---cCCHHHHHH
Q psy12373         47 SATTFIQYAKAKEA----MGSYRESVGAYERAE---DYDNVV---RVDLDH----LNDIRHAVDIVKA---KKCTEGAKR  109 (198)
Q Consensus        47 ~~~l~~~~A~~~e~----~g~~~~A~~~Y~ka~---~~~~av---~l~~~~----~~~~~~a~~l~~~---~~~~~~~~~  109 (198)
                      ++.....+|..+..    .+++++|+++|.++-   +.....   .++. .    .+++++|+...++   ..++.....
T Consensus       218 ~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~-~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~  296 (490)
T 2xm6_A          218 DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILE-QGLAGAKEPLKALEWYRKSAEQGNSDGQYY  296 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHH-HTTTSSCCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-CCCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence            45555556665554    556666666666542   222111   1222 2    4555555544432   234444455


Q ss_pred             HHHHHHhc-----CCHHHHHHHHHHc
Q psy12373        110 IADYCNKH-----GDFGAAIHFLILS  130 (198)
Q Consensus       110 ~A~~~~~~-----g~~~~Av~~y~~a  130 (198)
                      ++..+...     +++++|+..|.++
T Consensus       297 Lg~~y~~~~~g~~~~~~~A~~~~~~a  322 (490)
T 2xm6_A          297 LAHLYDKGAEGVAKNREQAISWYTKS  322 (490)
T ss_dssp             HHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            55555554     5566666555544

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=98.46  E-value=1.9e-05  Score=66.87  Aligned_cols=80  Identities=11%  Similarity=0.101  Sum_probs=57.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHH
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVV   81 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av   81 (198)
                      ..-+..|.+.|+++.|+.+|.++-.         ..+++.++..+|..+...|++++|++.|.++-.        +....
T Consensus        10 ~~~g~~~~~~g~~~~A~~~~~~al~---------~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~   80 (514)
T 2gw1_A           10 KDKGNQFFRNKKYDDAIKYYNWALE---------LKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRA   80 (514)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHH---------HCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHh---------cCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            3445666677888888888764421         124678899999999999999999999988742        23445


Q ss_pred             HHHhhccCCHHHHHHHHH
Q psy12373         82 RVDLDHLNDIRHAVDIVK   99 (198)
Q Consensus        82 ~l~~~~~~~~~~a~~l~~   99 (198)
                      .++. ..|++++|....+
T Consensus        81 ~~~~-~~g~~~~A~~~~~   97 (514)
T 2gw1_A           81 SANE-GLGKFADAMFDLS   97 (514)
T ss_dssp             HHHH-HTTCHHHHHHHHH
T ss_pred             HHHH-HHhhHHHHHHHHH
Confidence            6666 7788888876543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.45  E-value=1.2e-05  Score=56.64  Aligned_cols=97  Identities=20%  Similarity=0.180  Sum_probs=70.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      +-+..|-+.|++++|++.|.++      .++  ..++..++..+|..+...|++++|++.|.++      |++.-+....
T Consensus        13 ~lG~~~~~~~~~~~A~~~y~~A------l~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~   78 (127)
T 4gcn_A           13 DLGNAAYKQKDFEKAHVHYDKA------IEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKA------VEVGRETRAD   78 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHTTCC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHH------HHhCcccchh
Confidence            3455677788888888888654      333  3346788899999999999999999999988      7776533233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +...         ......+|..+...|++++|++.|.++
T Consensus        79 ~~~~---------a~~~~~lg~~~~~~~~~~~A~~~~~ka  109 (127)
T 4gcn_A           79 YKLI---------AKAMSRAGNAFQKQNDLSLAVQWFHRS  109 (127)
T ss_dssp             HHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHH---------HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3211         112446788899999999999988664

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.43  E-value=3.2e-05  Score=63.93  Aligned_cols=145  Identities=13%  Similarity=0.060  Sum_probs=89.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---------
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYD---------   78 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---------   78 (198)
                      -+.+|...|++++|++.|.++      .+++..+++    ..++..+|..+...|++++|+++|.++-+..         
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  182 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKA------ESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR  182 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH------HTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHH------HHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH
Confidence            455666778888888877655      444444443    3577889999999999999999999884321         


Q ss_pred             ------HHHHHHhhccCCHHHHHHHHHh-------cCCHH----HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHH
Q psy12373         79 ------NVVRVDLDHLNDIRHAVDIVKA-------KKCTE----GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQ  141 (198)
Q Consensus        79 ------~av~l~~~~~~~~~~a~~l~~~-------~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~  141 (198)
                            ..-.++. .+|++++|.....+       .+++.    ....+|..+...|++++|+.+|      .+|++++.
T Consensus       183 ~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~------~~al~~~~  255 (383)
T 3ulq_A          183 LLQCHSLFATNFL-DLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYF------KRAIAVFE  255 (383)
T ss_dssp             HHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH------HHHHHHHH
T ss_pred             HHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHH
Confidence                  1113333 45666666554322       22221    1223455555555555555442      44444443


Q ss_pred             HcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        142 QHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       142 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..+.           .+..+..+..+|..+...|++++|
T Consensus       256 ~~~~-----------~~~~~~~~~~l~~~~~~~g~~~~A  283 (383)
T 3ulq_A          256 ESNI-----------LPSLPQAYFLITQIHYKLGKIDKA  283 (383)
T ss_dssp             HTTC-----------GGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcc-----------chhHHHHHHHHHHHHHHCCCHHHH
Confidence            3321           133467888999999999999999

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.42  E-value=7.1e-06  Score=67.97  Aligned_cols=173  Identities=14%  Similarity=0.049  Sum_probs=101.8

Q ss_pred             chHHHHHHHHHHc-------CCHHH-------HHHHHHHccCHHHHHhhh-------hccCC-----hHHHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESA-------GNYEK-------AATCYIQLKNWTKIGQLL-------PHIKS-----ATTFIQYAKAKEA   60 (198)
Q Consensus         7 ~~~~~Aa~~y~~~-------g~~~~-------Ai~~y~~~~~~~~a~~l~-------~~~~~-----~~l~~~~A~~~e~   60 (198)
                      |.|++|..+|.++       ++...       ...+|...|+++.|....       ....+     ...+..+|..+..
T Consensus       115 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~  194 (378)
T 3q15_A          115 KEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD  194 (378)
T ss_dssp             TCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHH
Confidence            5677777777665       33222       233455666766654443       23332     3456688999999


Q ss_pred             cCCHHHHHHHHHHhcCHH--------------HHHHHHhhccCCHHHHHHHHHh-------cCCH---HHHHHHHHHHHh
Q psy12373         61 MGSYRESVGAYERAEDYD--------------NVVRVDLDHLNDIRHAVDIVKA-------KKCT---EGAKRIADYCNK  116 (198)
Q Consensus        61 ~g~~~~A~~~Y~ka~~~~--------------~av~l~~~~~~~~~~a~~l~~~-------~~~~---~~~~~~A~~~~~  116 (198)
                      .|++++|+++|.++-+..              ..-.++. ..|++++|.....+       ..++   .....+|..+..
T Consensus       195 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  273 (378)
T 3q15_A          195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYD-RSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCK  273 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHH
Confidence            999999999998875431              1233444 67899988766542       1222   234468999999


Q ss_pred             cCCHHHHHHHHHHcCCh---------HHHHHHH----HHcchhhHHhhhhh-hc----CCCCHHHHHHHHHHHHhCCChh
Q psy12373        117 HGDFGAAIHFLILSKCY---------QDAFNLS----QQHKKLHEFGKFLL-EE----DEPNPVELKRLAIHFEEDKGVL  178 (198)
Q Consensus       117 ~g~~~~Av~~y~~ag~~---------~~A~~la----~~~~~~~~~~~~~~-l~----~~~~~~~~~~~A~~~e~~g~~~  178 (198)
                      .|++++|+.+|.++-..         ...+.+.    ...+..+.+.+++. +.    .+..++.+..+|..|...|+++
T Consensus       274 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~  353 (378)
T 3q15_A          274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFE  353 (378)
T ss_dssp             TTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHH
Confidence            99999999998775321         1111111    11111111222221 01    1123456777888888888888


Q ss_pred             hH
Q psy12373        179 TS  180 (198)
Q Consensus       179 ~A  180 (198)
                      +|
T Consensus       354 ~A  355 (378)
T 3q15_A          354 QA  355 (378)
T ss_dssp             HH
T ss_pred             HH
Confidence            88

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.41  E-value=7.8e-06  Score=66.17  Aligned_cols=65  Identities=20%  Similarity=0.156  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                      .+..+|..++. |++++|+++|.++      +.+.. ..++...+         ......+|..+...|++++|+..|.+
T Consensus       118 ~~~~lg~~~~~-g~~~~A~~~~~~A------l~~~~-~~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~~~  180 (307)
T 2ifu_A          118 ALDRAGKLMEP-LDLSKAVHLYQQA------AAVFE-NEERLRQA---------AELIGKASRLLVRQQKFDEAAASLQK  180 (307)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHHH------HHHHH-HTTCHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHc-CCHHHHHHHHHHH------HHHHH-hCCChhHH---------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            44556666666 7777777777666      44444 33332211         11233567777777777777777765


Q ss_pred             cC
Q psy12373        130 SK  131 (198)
Q Consensus       130 ag  131 (198)
                      +-
T Consensus       181 al  182 (307)
T 2ifu_A          181 EK  182 (307)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.41  E-value=7.3e-05  Score=55.42  Aligned_cols=112  Identities=16%  Similarity=0.115  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC-CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN-DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~-~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ..+..+|..+...|++++|+++|.++      ++++. ..+ ++...         ......+|..+...|++++|+.+|
T Consensus        67 ~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~-~~~~~~~~~---------~~~~~~lg~~~~~~g~~~~A~~~~  130 (203)
T 3gw4_A           67 RALHQVGMVERMAGNWDAARRCFLEE------RELLA-SLPEDPLAA---------SANAYEVATVALHFGDLAGARQEY  130 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HSCCCHHHH---------HHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHH-HcCccHHHH---------HHHHHHHHHHHHHhCCHHHHHHHH
Confidence            34556667777777777777776665      55555 333 22111         112335677788888888888877


Q ss_pred             HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhHHhcCChhhHHhhhhh
Q psy12373        128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCSSG  195 (198)
Q Consensus       128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A~~ag~~~~Al~l~~~  195 (198)
                      .++      ++++...+...           .....+..++..+...|++++|...  +.+|++++.+
T Consensus       131 ~~a------l~~~~~~~~~~-----------~~~~~~~~la~~~~~~g~~~~A~~~--~~~al~~~~~  179 (203)
T 3gw4_A          131 EKS------LVYAQQADDQV-----------AIACAFRGLGDLAQQEKNLLEAQQH--WLRARDIFAE  179 (203)
T ss_dssp             HHH------HHHHHHTTCHH-----------HHHHHHHHHHHHHHHTTCHHHHHHH--HHHHHHHHHH
T ss_pred             HHH------HHHHHhccchH-----------HHHHHHHHHHHHHHHCcCHHHHHHH--HHHHHHHHHH
Confidence            654      44444433221           1124467788888888888888211  3444444443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=98.41  E-value=1.2e-05  Score=63.82  Aligned_cols=21  Identities=0%  Similarity=-0.236  Sum_probs=18.6

Q ss_pred             CHHHHHHHHHHHHhCCChhhH
Q psy12373        160 NPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       160 ~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .+..+..++..+...|++++|
T Consensus       285 ~~~~~~~l~~~~~~~g~~~~A  305 (327)
T 3cv0_A          285 TRSMWDFFRMLLNVMNRPDLV  305 (327)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHH
Confidence            578889999999999999888

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.40  E-value=3.4e-06  Score=66.16  Aligned_cols=162  Identities=12%  Similarity=0.000  Sum_probs=83.7

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC---hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH-------H----
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS---ATTFIQYAKAKEAMGSYRESVGAYERAEDY-------D----   78 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~---~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-------~----   78 (198)
                      +..|.+.|++++|++.|.+.      ...  ...+   +..+..+|..+...|++++|++.|.++-..       .    
T Consensus        22 a~~~~~~g~~~~A~~~~~~~------l~~--~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           22 AMEFYNQGKYDRAIEYFKAV------FTY--GRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------GGG--CSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHH------HHh--CCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            34444567777777776443      111  1123   678889999999999999999999987431       1    


Q ss_pred             HHHHHHhhc--------cCCHHHHHHHHHh----cCCH-HHHHHHHHHHHhcCC----HHHHHHHHHHcCChHHHHHHHH
Q psy12373         79 NVVRVDLDH--------LNDIRHAVDIVKA----KKCT-EGAKRIADYCNKHGD----FGAAIHFLILSKCYQDAFNLSQ  141 (198)
Q Consensus        79 ~av~l~~~~--------~~~~~~a~~l~~~----~~~~-~~~~~~A~~~~~~g~----~~~Av~~y~~ag~~~~A~~la~  141 (198)
                      ..-.++. .        .|++++|....++    .|+. .............++    .-....+|.+.|++++|+....
T Consensus        94 ~lg~~~~-~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           94 ERAMCYY-KLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHH-HHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHH-HhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            1223333 4        6888888765542    3321 111000000000000    0112334444455555544442


Q ss_pred             HcchhhHHhhhhhhcC--CCCHHHHHHHHHHHHhCCChhhH-HhcCChhhHHhh
Q psy12373        142 QHKKLHEFGKFLLEED--EPNPVELKRLAIHFEEDKGVLTS-FRVSQQSRAMPC  192 (198)
Q Consensus       142 ~~~~~~~~~~~~~l~~--~~~~~~~~~~A~~~e~~g~~~~A-~~ag~~~~Al~l  192 (198)
                      +.         +...+  ...++.+..++..|...|+...+ .+.|++.+|+..
T Consensus       173 ~~---------l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~  217 (261)
T 3qky_A          173 AV---------FDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVEL  217 (261)
T ss_dssp             HH---------HHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHH
T ss_pred             HH---------HHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHH
Confidence            21         11222  22467888888888777444333 344444444443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.40  E-value=4.1e-05  Score=61.39  Aligned_cols=50  Identities=20%  Similarity=0.212  Sum_probs=35.1

Q ss_pred             HHHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHc-CCHHHHHHHHHHhc
Q psy12373         26 ATCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAM-GSYRESVGAYERAE   75 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~-g~~~~A~~~Y~ka~   75 (198)
                      ..+|...|+++.|.....       ...+    ...+..+|..+... |++++|+++|.++-
T Consensus        84 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al  145 (292)
T 1qqe_A           84 YKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAG  145 (292)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            344556667776554443       2232    34677899999996 99999999999884

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.38  E-value=9.7e-06  Score=63.95  Aligned_cols=82  Identities=16%  Similarity=0.113  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH----------------HHHHHHHhhccCCHHHHHHHHHhc---------C-
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY----------------DNVVRVDLDHLNDIRHAVDIVKAK---------K-  102 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~----------------~~av~l~~~~~~~~~~a~~l~~~~---------~-  102 (198)
                      ..+..+|..+...|++++|+++|.++-..                .....++. ..|++++|..+.++.         + 
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~  190 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQ-NQGKYEEVEYYYQRALEIYQTKLGPD  190 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTSCTT
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            34556677777777777777777665432                12223344 566777666554321         1 


Q ss_pred             CHH---HHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373        103 CTE---GAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus       103 ~~~---~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                      ++.   ....+|..+...|++++|+.+|.++-
T Consensus       191 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al  222 (311)
T 3nf1_A          191 DPNVAKTKNNLASCYLKQGKFKQAETLYKEIL  222 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            121   22345666666677777766666553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=98.37  E-value=2e-06  Score=74.28  Aligned_cols=134  Identities=12%  Similarity=-0.011  Sum_probs=82.0

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-------HHHHHHHHhhcc---------CCHHHHHHHHHh----cC-CH
Q psy12373         46 KSATTFIQYAKAKEAMGSYRESVGAYERAED-------YDNVVRVDLDHL---------NDIRHAVDIVKA----KK-CT  104 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------~~~av~l~~~~~---------~~~~~a~~l~~~----~~-~~  104 (198)
                      .+...+..+|..+...|++++|+++|.++-.       +...-.++. ..         |++++|....++    .| ++
T Consensus       135 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~-~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~  213 (474)
T 4abn_A          135 ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLR-QLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG  213 (474)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHT-TCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH-HhccCChhhhhhhHHHHHHHHHHHHHhCCCCH
Confidence            3677888899999999999999999988743       223344455 66         888888776653    22 34


Q ss_pred             HHHHHHHHHHHhc--------CCHHHHHHHHHHcCChH-------HH-HHH---HHHcchhhHHhhhhh--hc-CCCCHH
Q psy12373        105 EGAKRIADYCNKH--------GDFGAAIHFLILSKCYQ-------DA-FNL---SQQHKKLHEFGKFLL--EE-DEPNPV  162 (198)
Q Consensus       105 ~~~~~~A~~~~~~--------g~~~~Av~~y~~ag~~~-------~A-~~l---a~~~~~~~~~~~~~~--l~-~~~~~~  162 (198)
                      .....+|..+...        |++++|+..|.++-..+       .+ ..+   +...|.++.......  +. .+..+.
T Consensus       214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  293 (474)
T 4abn_A          214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE  293 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence            5555677777777        77888888877653311       11 111   223333322222110  11 234566


Q ss_pred             HHHHHHHHHHhCCChhhH
Q psy12373        163 ELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       163 ~~~~~A~~~e~~g~~~~A  180 (198)
                      .+..++..+...|++.+|
T Consensus       294 a~~~l~~~~~~lg~~~eA  311 (474)
T 4abn_A          294 PQQREQQLLEFLSRLTSL  311 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            677777777777777666

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.37  E-value=0.0001  Score=63.15  Aligned_cols=97  Identities=6%  Similarity=-0.034  Sum_probs=48.1

Q ss_pred             ccCHHHHHhhhhc---cCChHHHHHHHHHHHH----cCCHHHHHHHHHHhcC---HHH---HHHHHhhc----cCCHHHH
Q psy12373         32 LKNWTKIGQLLPH---IKSATTFIQYAKAKEA----MGSYRESVGAYERAED---YDN---VVRVDLDH----LNDIRHA   94 (198)
Q Consensus        32 ~~~~~~a~~l~~~---~~~~~l~~~~A~~~e~----~g~~~~A~~~Y~ka~~---~~~---av~l~~~~----~~~~~~a   94 (198)
                      .+++++|.+...+   ..++.....+|..+..    .+++++|+++|.++-+   ...   .-.++. .    .+++++|
T Consensus        92 ~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~-~g~g~~~d~~~A  170 (490)
T 2xm6_A           92 PQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYF-EGDGVTRDYVMA  170 (490)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH-HTSSSCCCHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence            4455554444432   2355556666666666    5666666666665432   111   112222 2    3455555


Q ss_pred             HHHHH---hcCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q psy12373         95 VDIVK---AKKCTEGAKRIADYCNK----HGDFGAAIHFLIL  129 (198)
Q Consensus        95 ~~l~~---~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~  129 (198)
                      +..-+   +..++.....++..+..    .+++++|+..|.+
T Consensus       171 ~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~  212 (490)
T 2xm6_A          171 REWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQWYRK  212 (490)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence            54433   22344555555655555    5566666666555

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.37  E-value=5e-05  Score=62.80  Aligned_cols=143  Identities=17%  Similarity=0.101  Sum_probs=87.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------H--
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDY--------D--   78 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~--   78 (198)
                      +.+|...|++++|++.|.++      .+++..+++    ..++..+|..+...|+++.|+++|.++-+.        .  
T Consensus       108 g~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  181 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREA------EKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRT  181 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------HTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHH------HHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhH
Confidence            44556778888888887654      444444443    457778999999999999999999887422        1  


Q ss_pred             -----HHHHHHhhccCCHHHHHHHHH-------hcCCHH----HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHH
Q psy12373         79 -----NVVRVDLDHLNDIRHAVDIVK-------AKKCTE----GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQ  142 (198)
Q Consensus        79 -----~av~l~~~~~~~~~~a~~l~~-------~~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~  142 (198)
                           ..-.++. ..|++++|.....       ..+++.    ....+|..+...|++++|+.+|      .+|++++..
T Consensus       182 ~~~~~~lg~~y~-~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~------~~al~~~~~  254 (378)
T 3q15_A          182 IQSLFVIAGNYD-DFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF------QKAAKVSRE  254 (378)
T ss_dssp             HHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH------HHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHh
Confidence                 1122233 4566666554332       222221    1123455555555555555443      344444433


Q ss_pred             cchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        143 HKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       143 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .+            .+..+..+..+|..+...|++++|
T Consensus       255 ~~------------~~~~~~~~~~la~~~~~~g~~~~A  280 (378)
T 3q15_A          255 KV------------PDLLPKVLFGLSWTLCKAGQTQKA  280 (378)
T ss_dssp             HC------------GGGHHHHHHHHHHHHHHTTCHHHH
T ss_pred             hC------------ChhHHHHHHHHHHHHHHCCCHHHH
Confidence            32            122367888999999999999999

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=98.37  E-value=3.8e-05  Score=61.95  Aligned_cols=173  Identities=9%  Similarity=-0.044  Sum_probs=104.3

Q ss_pred             cchHHHHHHHHHHcCCH-----HHHHHHHHHccCHHHHHhhhhc-------cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESAGNY-----EKAATCYIQLKNWTKIGQLLPH-------IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~-----~~Ai~~y~~~~~~~~a~~l~~~-------~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      +|++++|...+.....+     ...+.+|...++++.+...++.       .+++.++..+|..+...|++++|++.|.+
T Consensus        47 ~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~  126 (291)
T 3mkr_A           47 QRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ  126 (291)
T ss_dssp             TTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             CCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC
Confidence            35555555554433321     2233444455566655444432       23677888899999999999999999999


Q ss_pred             hcCH---HHHHHHHhhccCCHHHHHHHHHh----cCCHHHHHH----HHHHHHhcCCHHHHHHHHHHcCC----hHHH--
Q psy12373         74 AEDY---DNVVRVDLDHLNDIRHAVDIVKA----KKCTEGAKR----IADYCNKHGDFGAAIHFLILSKC----YQDA--  136 (198)
Q Consensus        74 a~~~---~~av~l~~~~~~~~~~a~~l~~~----~~~~~~~~~----~A~~~~~~g~~~~Av~~y~~ag~----~~~A--  136 (198)
                      .+++   ...++++. .+|++++|....++    .|+. ....    +...+...|++++|+..|.++-.    ...+  
T Consensus       127 ~~~~~~~~~l~~~~~-~~g~~~~A~~~l~~~~~~~p~~-~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~  204 (291)
T 3mkr_A          127 GDSLECMAMTVQILL-KLDRLDLARKELKKMQDQDEDA-TLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLN  204 (291)
T ss_dssp             CCSHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             CCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhhCcCc-HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHH
Confidence            5554   34457777 78999999876653    2332 1122    23444556888888888766522    1111  


Q ss_pred             --HHHHHHcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        137 --FNLSQQHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       137 --~~la~~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                        ..+..+.|.++.....+.  +. .+.+++.+..++..+...|++.++
T Consensus       205 ~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~ea  253 (291)
T 3mkr_A          205 GQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEV  253 (291)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHH
Confidence              112234444433333221  22 456899999999999889988654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.36  E-value=1.4e-05  Score=65.50  Aligned_cols=153  Identities=13%  Similarity=0.047  Sum_probs=92.1

Q ss_pred             HHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhc
Q psy12373         27 TCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAMGS--------------------YRESVGAYERAE   75 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~g~--------------------~~~A~~~Y~ka~   75 (198)
                      .+|...|+++.|...+.       ...+    ..++..+|..+...|+                    +++|+++|.++-
T Consensus        95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  174 (406)
T 3sf4_A           95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL  174 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            34556677777655443       2222    3477788999999999                    999999888764


Q ss_pred             CH--------------HHHHHHHhhccCCHHHHHHHHHh-------cCCHH----HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         76 DY--------------DNVVRVDLDHLNDIRHAVDIVKA-------KKCTE----GAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        76 ~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ..              .....++. ..|++++|.....+       .+++.    ....+|..+...|++++|+.+|.++
T Consensus       175 ~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  253 (406)
T 3sf4_A          175 SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  253 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHH-HHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhccCcHHHHHHHHHHHHHHH-HccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            32              23345555 67898888766543       33322    3346788889999999988888765


Q ss_pred             CChHHH--------------HHHHHHcchhhHH----hhhhhhcC-CC----CHHHHHHHHHHHHhCCChhhH
Q psy12373        131 KCYQDA--------------FNLSQQHKKLHEF----GKFLLEED-EP----NPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 g~~~~A--------------~~la~~~~~~~~~----~~~~~l~~-~~----~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      -....-              ..++...|.++..    ..++.+.+ ..    .+..+..+|..|...|++.+|
T Consensus       254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            321110              1112233333221    11111111 11    256777888888888888888

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=98.36  E-value=2.6e-05  Score=59.58  Aligned_cols=114  Identities=11%  Similarity=0.046  Sum_probs=82.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR   82 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~   82 (198)
                      .-+..|...|++++|++.|.++      .++.. .++...+..+|..+...|++++|+++|.++-.        +...-.
T Consensus        12 ~~g~~~~~~~~~~~A~~~~~~a------l~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~   84 (228)
T 4i17_A           12 NEGNDALNAKNYAVAFEKYSEY------LKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA   84 (228)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHH------HhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            4456677778888888888654      22211 14567788899999999999999999998742        234455


Q ss_pred             HHhhccCCHHHHHHHHHh----cCC-H-------HHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         83 VDLDHLNDIRHAVDIVKA----KKC-T-------EGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~----~~~-~-------~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      ++. ..|++++|....++    .|+ +       .....+|..+...|++++|++.|.++=.
T Consensus        85 ~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~  145 (228)
T 4i17_A           85 AYR-DMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD  145 (228)
T ss_dssp             HHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             HHH-HcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh
Confidence            666 78999999877653    232 3       2244677888888999999999888754

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.34  E-value=2.9e-06  Score=65.90  Aligned_cols=125  Identities=16%  Similarity=0.140  Sum_probs=82.1

Q ss_pred             chHHHHHHHHHHcC--C-HH------HHHHHHHHccCHHHHHhhhhc-------c--C----ChHHHHHHHHHHHHcCCH
Q psy12373          7 TLDRGKWTLYESAG--N-YE------KAATCYIQLKNWTKIGQLLPH-------I--K----SATTFIQYAKAKEAMGSY   64 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g--~-~~------~Ai~~y~~~~~~~~a~~l~~~-------~--~----~~~l~~~~A~~~e~~g~~   64 (198)
                      ..|++|.+++.+..  + +.      ....+|...|+++.|...+.+       .  .    ....+..+|..+...|++
T Consensus        22 ~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  101 (283)
T 3edt_B           22 PLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKY  101 (283)
T ss_dssp             HHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccH
Confidence            45566666665542  1 22      334455566777765544431       1  1    345677889999999999


Q ss_pred             HHHHHHHHHhcCH----------------HHHHHHHhhccCCHHHHHHHHHhc---------C-CHH---HHHHHHHHHH
Q psy12373         65 RESVGAYERAEDY----------------DNVVRVDLDHLNDIRHAVDIVKAK---------K-CTE---GAKRIADYCN  115 (198)
Q Consensus        65 ~~A~~~Y~ka~~~----------------~~av~l~~~~~~~~~~a~~l~~~~---------~-~~~---~~~~~A~~~~  115 (198)
                      ++|+++|.++-..                .....++. ..|++++|..+.++.         + ++.   ....+|..+.
T Consensus       102 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~  180 (283)
T 3edt_B          102 KEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQ-NQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYL  180 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            9999999998543                12334455 789999988766431         1 222   2346788899


Q ss_pred             hcCCHHHHHHHHHHcCC
Q psy12373        116 KHGDFGAAIHFLILSKC  132 (198)
Q Consensus       116 ~~g~~~~Av~~y~~ag~  132 (198)
                      ..|++++|+.+|.++-.
T Consensus       181 ~~g~~~~A~~~~~~~l~  197 (283)
T 3edt_B          181 KQGKYQDAETLYKEILT  197 (283)
T ss_dssp             HHTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            99999999999876543

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.33  E-value=6.3e-05  Score=58.42  Aligned_cols=123  Identities=12%  Similarity=0.164  Sum_probs=71.7

Q ss_pred             chHHHHHHHHHHc--------CCHHHHHHHHHHccCHHHHHhhhhcc----CC----hHHHHHHHHHHHHcCCHHHHHHH
Q psy12373          7 TLDRGKWTLYESA--------GNYEKAATCYIQLKNWTKIGQLLPHI----KS----ATTFIQYAKAKEAMGSYRESVGA   70 (198)
Q Consensus         7 ~~~~~Aa~~y~~~--------g~~~~Ai~~y~~~~~~~~a~~l~~~~----~~----~~l~~~~A~~~e~~g~~~~A~~~   70 (198)
                      |.+++|.++|.++        .-+.....+|...|+++.|...+.+.    ++    ...+..+|..+...|++++|+++
T Consensus        17 ~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~   96 (272)
T 3u4t_A           17 NNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQ   96 (272)
T ss_dssp             TCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHH
Confidence            5566666666653        12334444666666666665544321    12    23366778888888888888888


Q ss_pred             HHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         71 YERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        71 Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      |.++-.        +.....++. ..|++++|....++.    | ++.....+|..+-..+++++|+..|.++
T Consensus        97 ~~~a~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a  168 (272)
T 3u4t_A           97 YQAAVDRDTTRLDMYGQIGSYFY-NKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKV  168 (272)
T ss_dssp             HHHHHHHSTTCTHHHHHHHHHHH-HTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHhcCcccHHHHHHHHHHHH-HccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            877642        233444555 677888777776542    1 2444556663333344777777777665

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.33  E-value=1.2e-06  Score=63.76  Aligned_cols=52  Identities=10%  Similarity=-0.026  Sum_probs=28.4

Q ss_pred             HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +|...|++++||+.+.++-....        ..+.....+|+.+...|++++|+++|.++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~~~p--------~~~~~~~~la~~y~~~~~~~~A~~~~~~a   57 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTPSPR--------QKSIKGFYFAKLYYEAKEYDLAKKYICTY   57 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSCSHH--------HHHTTHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHHhcccCc--------ccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            34445566666666554422111        11233456677777777777777777665

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=98.32  E-value=4.6e-05  Score=59.22  Aligned_cols=170  Identities=13%  Similarity=0.077  Sum_probs=114.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-----------HHHH
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED-----------YDNV   80 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-----------~~~a   80 (198)
                      -+..|...|++++|+..|.++      .++  ...++..+..+|..+...|++++|+++|.++-.           +...
T Consensus         9 ~a~~~~~~~~~~~A~~~~~~~------l~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~l   80 (272)
T 3u4t_A            9 YADFLFKNNNYAEAIEVFNKL------EAK--KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYY   80 (272)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHH------HHT--TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHH------HHh--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHH
Confidence            456677778888888888654      111  223566888999999999999999999998854           3455


Q ss_pred             HHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh----HHH-HHHH---HHcchhh
Q psy12373         81 VRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCY----QDA-FNLS---QQHKKLH  147 (198)
Q Consensus        81 v~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~----~~A-~~la---~~~~~~~  147 (198)
                      ..++. ..|++++|.....+    .| .+.....+|..+...|++++|++.|.++-..    ..+ ..++   ...+.++
T Consensus        81 g~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~  159 (272)
T 3u4t_A           81 GKILM-KKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYV  159 (272)
T ss_dssp             HHHHH-HTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHH-HcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            66677 78999999887653    23 3455668899999999999999999887552    111 1122   1222332


Q ss_pred             H----HhhhhhhcCCCCHHHHHHHHHHHHhCCC---hhhHHhcCChhhHHhhh
Q psy12373        148 E----FGKFLLEEDEPNPVELKRLAIHFEEDKG---VLTSFRVSQQSRAMPCS  193 (198)
Q Consensus       148 ~----~~~~~~l~~~~~~~~~~~~A~~~e~~g~---~~~A~~ag~~~~Al~l~  193 (198)
                      .    +..++.+ .+..+..+..++..+...|+   +++|..  .+.+|+++.
T Consensus       160 ~A~~~~~~a~~~-~p~~~~~~~~~~~~~~~~~~~~~~~~A~~--~~~~a~~~~  209 (272)
T 3u4t_A          160 KADSSFVKVLEL-KPNIYIGYLWRARANAAQDPDTKQGLAKP--YYEKLIEVC  209 (272)
T ss_dssp             HHHHHHHHHHHH-STTCHHHHHHHHHHHHHHSTTCSSCTTHH--HHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CccchHHHHHHHHHHHHcCcchhhHHHHH--HHHHHHHHH
Confidence            2    2222222 24457888888888877777   666621  256666655

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.31  E-value=2.1e-05  Score=56.96  Aligned_cols=126  Identities=11%  Similarity=0.034  Sum_probs=87.5

Q ss_pred             chHHHHHHHHHHcCCHH--------HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNYE--------KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~--------~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      +.+++|...|.++-..+        ....+|.+.|+|++|.+.+.+     .+++..+..+|..+...|++++|+.+|.+
T Consensus        11 ~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~   90 (150)
T 4ga2_A           11 ADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRR   90 (150)
T ss_dssp             HHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHH
Confidence            67778888777763322        235677788888887666653     34788999999999999999999999998


Q ss_pred             hcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhh
Q psy12373         74 AEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFL  153 (198)
Q Consensus        74 a~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~  153 (198)
                      +      +++--                .++.....+|..+.+.|++++|++.|.+     +|++               
T Consensus        91 a------l~~~p----------------~~~~~~~~la~~~~~~~~~~~aa~~~~~-----~al~---------------  128 (150)
T 4ga2_A           91 S------VELNP----------------TQKDLVLKIAELLCKNDVTDGRAKYWVE-----RAAK---------------  128 (150)
T ss_dssp             H------HHHCT----------------TCHHHHHHHHHHHHHHCSSSSHHHHHHH-----HHHH---------------
T ss_pred             H------HHhCC----------------CCHHHHHHHHHHHHHcCChHHHHHHHHH-----HHHH---------------
Confidence            7      54322                1345566778888888887766655421     1111               


Q ss_pred             hhcCCCCHHHHHHHHHHHHhCCC
Q psy12373        154 LEEDEPNPVELKRLAIHFEEDKG  176 (198)
Q Consensus       154 ~l~~~~~~~~~~~~A~~~e~~g~  176 (198)
                       +. +.+|.++...++.+..+|+
T Consensus       129 -l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A          129 -LF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             -HS-TTCHHHHHHHHHHHHTCCC
T ss_pred             -hC-cCCHHHHHHHHHHHHHhCc
Confidence             22 3567788888888887774

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.29  E-value=8e-05  Score=58.73  Aligned_cols=104  Identities=15%  Similarity=0.150  Sum_probs=68.7

Q ss_pred             HHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHcCC--------------------HHHHHHHHHHhc
Q psy12373         27 TCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAMGS--------------------YRESVGAYERAE   75 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~g~--------------------~~~A~~~Y~ka~   75 (198)
                      .+|...|+++.+...+.       ...+    ..++..+|..+...|+                    +++|+++|.++-
T Consensus        91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~  170 (338)
T 3ro2_A           91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL  170 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            34455667776554443       2333    3367788999999999                    999999888763


Q ss_pred             CH--------------HHHHHHHhhccCCHHHHHHHHHh-------cCCHH----HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         76 DY--------------DNVVRVDLDHLNDIRHAVDIVKA-------KKCTE----GAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        76 ~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~~~~~----~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ..              .....++. ..|++++|....++       .+++.    ....+|..+...|++++|+++|.++
T Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a  249 (338)
T 3ro2_A          171 SLVTALGDRAAQGRAFGNLGNTHY-LLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  249 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            21              23344555 67889888766543       23322    2345788888999999998888765


Q ss_pred             C
Q psy12373        131 K  131 (198)
Q Consensus       131 g  131 (198)
                      -
T Consensus       250 l  250 (338)
T 3ro2_A          250 L  250 (338)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.29  E-value=4.8e-06  Score=72.70  Aligned_cols=133  Identities=8%  Similarity=-0.077  Sum_probs=90.1

Q ss_pred             HHHHHcCCHHHHHHHHHHccCHHHHHhhh-h-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCH
Q psy12373         14 TLYESAGNYEKAATCYIQLKNWTKIGQLL-P-HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDI   91 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~-~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~   91 (198)
                      ..+...|++++|+.+|.++-....  +++ . +.+....+..+|..+...|+|++|+.+|.++      +.++...+|. 
T Consensus       317 ~~~~~qg~~~eA~~l~~~aL~~~~--~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a------L~i~~~~lG~-  387 (490)
T 3n71_A          317 DKARSEGLYHEVVKLCRECLEKQE--PVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM------VDGYMKLYHH-  387 (490)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHT--TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHSCT-
T ss_pred             HHHHhCCCHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHHHHHHcCC-
Confidence            345567888888888866532221  111 1 1224567778999999999999999999998      7777755555 


Q ss_pred             HHHHHHHHhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCC--CCHHHHHHHH
Q psy12373         92 RHAVDIVKAKKCTEGAK-RIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDE--PNPVELKRLA  168 (198)
Q Consensus        92 ~~a~~l~~~~~~~~~~~-~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~--~~~~~~~~~A  168 (198)
                              .||+..... .+|..|...|++++|+.+|.+|-.      +.         ..+  ++++  .+.++...++
T Consensus       388 --------~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~------i~---------~~~--lG~~Hp~~~~~~~~l~  442 (490)
T 3n71_A          388 --------NNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYA------IL---------LVT--HGPSHPITKDLEAMRM  442 (490)
T ss_dssp             --------TCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HH---------HHH--TCTTSHHHHHHHHHHH
T ss_pred             --------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH------HH---------HHH--hCCCChHHHHHHHHHH
Confidence                    234433333 688889999999999888876533      32         222  4432  2355667788


Q ss_pred             HHHHhCCChhhH
Q psy12373        169 IHFEEDKGVLTS  180 (198)
Q Consensus       169 ~~~e~~g~~~~A  180 (198)
                      +.+.+.+.|.+|
T Consensus       443 ~~~~e~~~~~~a  454 (490)
T 3n71_A          443 QTEMELRMFRQN  454 (490)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            888888888888

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.29  E-value=4.1e-05  Score=60.45  Aligned_cols=173  Identities=14%  Similarity=0.097  Sum_probs=102.0

Q ss_pred             chHHHHHHHHHHc-----CCHH-------HHHHHHHHccCHHHHHhhhh-------ccC----ChHHHHHHHHHHHHcCC
Q psy12373          7 TLDRGKWTLYESA-----GNYE-------KAATCYIQLKNWTKIGQLLP-------HIK----SATTFIQYAKAKEAMGS   63 (198)
Q Consensus         7 ~~~~~Aa~~y~~~-----g~~~-------~Ai~~y~~~~~~~~a~~l~~-------~~~----~~~l~~~~A~~~e~~g~   63 (198)
                      |.+++|..+|.++     +++.       ....+|...|+++.+...+.       ...    ...++..+|..+...|+
T Consensus        19 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   98 (338)
T 3ro2_A           19 GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGN   98 (338)
T ss_dssp             TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccC
Confidence            5666777666654     2322       33445556677776655543       222    24466788999999999


Q ss_pred             HHHHHHHHHHhcCH--------------HHHHHHHhhccCC--------------------HHHHHHHHHh-------cC
Q psy12373         64 YRESVGAYERAEDY--------------DNVVRVDLDHLND--------------------IRHAVDIVKA-------KK  102 (198)
Q Consensus        64 ~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~--------------------~~~a~~l~~~-------~~  102 (198)
                      +++|+++|.++-..              .....++. ..|+                    +++|.....+       .+
T Consensus        99 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~  177 (338)
T 3ro2_A           99 FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH-AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALG  177 (338)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH-HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999998886432              12233444 5567                    7777655432       23


Q ss_pred             CHH----HHHHHHHHHHhcCCHHHHHHHHHHcCChHHH--------------HHHHHHcchhhHH----hhhhhhc-CCC
Q psy12373        103 CTE----GAKRIADYCNKHGDFGAAIHFLILSKCYQDA--------------FNLSQQHKKLHEF----GKFLLEE-DEP  159 (198)
Q Consensus       103 ~~~----~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A--------------~~la~~~~~~~~~----~~~~~l~-~~~  159 (198)
                      ++.    ....+|..+...|++++|+.+|.++-....-              ..+....|.++..    .+++.+. ...
T Consensus       178 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (338)
T 3ro2_A          178 DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK  257 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence            322    2335788888999999999888776432110              1122233333322    2221121 111


Q ss_pred             C----HHHHHHHHHHHHhCCChhhH
Q psy12373        160 N----PVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       160 ~----~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +    +..+..+|..+...|++++|
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A  282 (338)
T 3ro2_A          258 DRAVEAQSCYSLGNTYTLLQDYEKA  282 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCHHHH
Confidence            1    56778888889999999888

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.27  E-value=8.3e-05  Score=59.42  Aligned_cols=57  Identities=5%  Similarity=-0.136  Sum_probs=43.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCC-hhhH
Q psy12373        107 AKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKG-VLTS  180 (198)
Q Consensus       107 ~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~-~~~A  180 (198)
                      ...+|..+...|++++|+++|.+      |++++.+.+..           ...+..+..+|..+...|+ +++|
T Consensus       199 ~~nlg~~y~~~~~y~~A~~~~~~------al~~~~~~~~~-----------~~~~~~~~~lg~~~~~~g~~~~~A  256 (293)
T 3u3w_A          199 RYNHAKALYLDSRYEESLYQVNK------AIEISCRINSM-----------ALIGQLYYQRGECLRKLEYEEAEI  256 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHTTBC-----------TTHHHHHHHHHHHHHHTTCCHHHH
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHH------HHHHHHHcCcH-----------HHHHHHHHHHHHHHHHhCCcHHHH
Confidence            44689999999999999998765      56666555332           2236788899999999995 5888

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.27  E-value=2.9e-05  Score=58.40  Aligned_cols=127  Identities=9%  Similarity=0.002  Sum_probs=85.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR   92 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~   92 (198)
                      +..|...|++++|++.|.++-           -+++..+..+|..+...|++++|+++|.++      +++.-       
T Consensus        13 g~~~~~~~~~~~A~~~~~~a~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~-------   68 (213)
T 1hh8_A           13 GVLAADKKDWKGALDAFSAVQ-----------DPHSRICFNIGCMYTILKNMTEAEKAFTRS------INRDK-------   68 (213)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-------
T ss_pred             HHHHHHhCCHHHHHHHHHHHc-----------CCChHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCc-------
Confidence            445556678888887776651           125678889999999999999999999887      54322       


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhh-cCCCCHHHHHHHHHHH
Q psy12373         93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLE-EDEPNPVELKRLAIHF  171 (198)
Q Consensus        93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~  171 (198)
                               ..+.....+|..+...|++++|++.|.++      +++......... ... .+ -.+..+..+..+|..+
T Consensus        69 ---------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~l~~~~  131 (213)
T 1hh8_A           69 ---------HLAVAYFQRGMLYYQTEKYDLAIKDLKEA------LIQLRGNQLIDY-KIL-GLQFKLFACEVLYNIAFMY  131 (213)
T ss_dssp             ---------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHTTTTCSEEEC-GGG-TBCCEEEHHHHHHHHHHHH
T ss_pred             ---------cchHHHHHHHHHHHHcccHHHHHHHHHHH------HHhCCCccHHHH-HHh-ccccCccchHHHHHHHHHH
Confidence                     13444567888899999999999887664      322222111000 000 00 1123468899999999


Q ss_pred             HhCCChhhH
Q psy12373        172 EEDKGVLTS  180 (198)
Q Consensus       172 e~~g~~~~A  180 (198)
                      ...|++++|
T Consensus       132 ~~~g~~~~A  140 (213)
T 1hh8_A          132 AKKEEWKKA  140 (213)
T ss_dssp             HHTTCHHHH
T ss_pred             HHccCHHHH
Confidence            999999998

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.26  E-value=3.2e-05  Score=54.54  Aligned_cols=90  Identities=17%  Similarity=0.179  Sum_probs=66.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      +-+..|-+.|++++|++.|.++      .++  ...++.++..+|..+...|++++|++.|.++      |++--     
T Consensus        18 ~~G~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a------l~~~p-----   78 (126)
T 4gco_A           18 NKGNEYFKKGDYPTAMRHYNEA------VKR--DPENAILYSNRAACLTKLMEFQRALDDCDTC------IRLDS-----   78 (126)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHH------HHhhh-----
Confidence            3455666778888888877554      222  3347788889999999999999999998887      54322     


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                 ..+.....+|..+...|++++|++.|.++
T Consensus        79 -----------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a  107 (126)
T 4gco_A           79 -----------KFIKGYIRKAACLVAMREWSKAQRAYEDA  107 (126)
T ss_dssp             -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----------hhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                       23445667899999999999998887664

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=98.26  E-value=8.1e-05  Score=53.75  Aligned_cols=123  Identities=12%  Similarity=0.028  Sum_probs=90.5

Q ss_pred             chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |++++|.++|.++-.        +.....+|...|+++.+...+.+     ..+..++..+|..+...|++++|+++|.+
T Consensus        22 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~  101 (186)
T 3as5_A           22 GRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIK  101 (186)
T ss_dssp             TCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            678888888877532        23445667788888887666653     23678888999999999999999999998


Q ss_pred             hcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         74 AED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        74 a~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +-.        +.....++. ..|++++|..+..+    .+ ++.....+|..+...|++++|+.+|.++
T Consensus       102 ~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A          102 VAEANPINFNVRFRLGVALD-NLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             HHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHhcCcHhHHHHHHHHHHHH-HcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            742        233455666 78999999887654    22 3455667888888888888888887654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.25  E-value=8.4e-05  Score=50.56  Aligned_cols=111  Identities=21%  Similarity=0.342  Sum_probs=79.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVR   82 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~   82 (198)
                      .-+..|...|++++|+.+|.+.-      .+  ...+...+..+|..+...|++++|+++|.++-.        +.....
T Consensus         6 ~l~~~~~~~~~~~~A~~~~~~~~------~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~   77 (136)
T 2fo7_A            6 NLGNAYYKQGDYDEAIEYYQKAL------EL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGN   77 (136)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHH------Hc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHH
Confidence            34566777788888888876541      11  223567788899999999999999999998742        234455


Q ss_pred             HHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         83 VDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ++. ..|++++|..+..+    .+ ++.....+|..+...|++++|+.+|.++
T Consensus        78 ~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  129 (136)
T 2fo7_A           78 AYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA  129 (136)
T ss_dssp             HHH-TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHH-HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            666 78999999877653    22 3445556788888888888888777654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=98.24  E-value=6.9e-05  Score=56.07  Aligned_cols=124  Identities=19%  Similarity=0.026  Sum_probs=93.2

Q ss_pred             cchHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHc-CCHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAM-GSYRESVGAY   71 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~-g~~~~A~~~Y   71 (198)
                      .|++++|.++|.++-     +   +.....+|...|+++.+...+.+     ..+...+..+|..+... |++++|+++|
T Consensus        21 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~  100 (225)
T 2vq2_A           21 GQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYF  100 (225)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            377888888887642     1   22345677788888887766653     23677888999999999 9999999999


Q ss_pred             HHhcC----------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         72 ERAED----------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        72 ~ka~~----------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .++-.          +.....++. ..|++++|.....+    .| ++.....+|..+...|++++|+..|.++
T Consensus       101 ~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  173 (225)
T 2vq2_A          101 DKALADPTYPTPYIANLNKGICSA-KQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY  173 (225)
T ss_dssp             HHHHTSTTCSCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHcCcCCcchHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            99754          234455666 78999999877653    23 3555667899999999999999998875

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.23  E-value=7.7e-05  Score=59.62  Aligned_cols=163  Identities=5%  Similarity=-0.105  Sum_probs=93.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc-------CH-----
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE-------DY-----   77 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~-------~~-----   77 (198)
                      ..-+..|...|++++|+++|.+.-.....  .-...........+|..+...|++++|+++|.++-       +.     
T Consensus        79 ~~~~~~~~~~~~y~~A~~~~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           79 KDQVIMLCKQKRYKEIYNKVWNELKKEEY--HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCC--CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHhccccC--ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            45567777778888888887643211000  00000012334556666667777777777666652       11     


Q ss_pred             --HHHHHHHhhccCCHHHHHHHHHh-------cCC-H----HHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHc
Q psy12373         78 --DNVVRVDLDHLNDIRHAVDIVKA-------KKC-T----EGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQH  143 (198)
Q Consensus        78 --~~av~l~~~~~~~~~~a~~l~~~-------~~~-~----~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~  143 (198)
                        ...-.++. ..|++++|.....+       .++ +    .....+|..+...|++++|+++|.++      ++++...
T Consensus       157 ~~~~lg~~y~-~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka------l~~~~~~  229 (293)
T 2qfc_A          157 IENAIANIYA-ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA------IEISCRI  229 (293)
T ss_dssp             HHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHT
T ss_pred             HHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH------HHHHHhc
Confidence              12223344 45666666554432       222 1    23446888899999999999988654      4454332


Q ss_pred             chhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH-HhcCChhhHHhhhh
Q psy12373        144 KKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS-FRVSQQSRAMPCSS  194 (198)
Q Consensus       144 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A-~~ag~~~~Al~l~~  194 (198)
                      +.           ....+..+..+|..|...|++++| ..  .+.+|+.++.
T Consensus       230 ~~-----------~~~~~~~~~~lg~~y~~~g~~~~Ai~~--~~~~Al~~~~  268 (293)
T 2qfc_A          230 NS-----------MALIGQLYYQRGECLRKLEYEEAEIED--AYKKASFFFD  268 (293)
T ss_dssp             TB-----------CSSHHHHHHHHHHHHHHTTCCHHHHHH--HHHHHHHHHH
T ss_pred             Cc-----------HHHHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHHH
Confidence            21           122367888999999999999877 21  1445555543

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.22  E-value=1e-05  Score=62.75  Aligned_cols=57  Identities=16%  Similarity=-0.004  Sum_probs=37.4

Q ss_pred             HHHcCCHHHHHHHHHHccCHHHHHhhhh--ccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         16 YESAGNYEKAATCYIQLKNWTKIGQLLP--HIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        16 y~~~g~~~~Ai~~y~~~~~~~~a~~l~~--~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +...|++++|+.+|.++-..-.  ++..  ......++..+|..+...|++++|+++|.++
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   69 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLE--KTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDA   69 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHH--HHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHH--HhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence            3445777777777765532221  1111  1124567788999999999999999999987

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.21  E-value=0.0001  Score=54.39  Aligned_cols=140  Identities=10%  Similarity=-0.057  Sum_probs=88.5

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---HHH----HH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD---NVV----RV   83 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---~av----~l   83 (198)
                      .-+..|.+.|+++.|+..|.++-..        ..+++..+..+|..+...|++++|+.+|.++-...   ...    .+
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~   82 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDE--------LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKL   82 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHH--------HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHH
Confidence            3455666677777777777554211        23477889999999999999999999999874321   111    11


Q ss_pred             Hh-hccCC---HHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCC
Q psy12373         84 DL-DHLND---IRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDE  158 (198)
Q Consensus        84 ~~-~~~~~---~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~  158 (198)
                      .. ...+.   .....+.....| ++.....+|..+...|++++|+..|.++-.                      +.++
T Consensus        83 ~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~----------------------~~p~  140 (176)
T 2r5s_A           83 ELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILK----------------------VNLG  140 (176)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT----------------------TCTT
T ss_pred             HHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHH----------------------hCcc
Confidence            11 01111   111122223334 356666788888888888888777764321                      2332


Q ss_pred             -CCHHHHHHHHHHHHhCCChhhH
Q psy12373        159 -PNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       159 -~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                       .++..+..++..|...|++++|
T Consensus       141 ~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A          141 AQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             TTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             cChHHHHHHHHHHHHHhCCCCcH
Confidence             3467888899999999988887

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.19  E-value=4.9e-05  Score=62.79  Aligned_cols=114  Identities=10%  Similarity=0.075  Sum_probs=78.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------------HHHHHHHhhccCCHHHHHHHHHh-------cCC----
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY--------------DNVVRVDLDHLNDIRHAVDIVKA-------KKC----  103 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~~~----  103 (198)
                      ..+..+|..+...|++++|+++|.++-..              .....++. ..|++++|.....+       .++    
T Consensus       224 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~  302 (411)
T 4a1s_A          224 RACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHI-FLGQFEDAAEHYKRTLALAVELGEREVE  302 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH-HCcCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            46778899999999999999999887432              33445566 67888888776543       222    


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        104 TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ......+|..+...|++++|+.+|.+      |+.+....+..           ......+..+|..|...|++.+|
T Consensus       303 ~~~~~~la~~~~~~g~~~~A~~~~~~------al~~~~~~~~~-----------~~~~~~~~~la~~~~~~g~~~~A  362 (411)
T 4a1s_A          303 AQSCYSLGNTYTLLHEFNTAIEYHNR------HLAIAQELGDR-----------IGEARACWSLGNAHSAIGGHERA  362 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHH------HHHHHHHHTCH-----------HHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHCCCh-----------HHHHHHHHHHHHHHHHhccHHHH
Confidence            12234567778888888888877754      44454443321           11346778899999999999888

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=98.19  E-value=0.00012  Score=56.80  Aligned_cols=125  Identities=9%  Similarity=-0.061  Sum_probs=79.2

Q ss_pred             chHHHHHHHHHHcC--------CHHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAG--------NYEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g--------~~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |++++|.++|.++=        -+.....+|...|+|+.|...+.+     ..++..+..+|..+...|++++|+++|.+
T Consensus        57 ~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  136 (275)
T 1xnf_A           57 GLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA  136 (275)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            56666666666541        122344566677888887666653     23678899999999999999999999998


Q ss_pred             hcCH-------HHHHHHHhhccCCHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         74 AEDY-------DNVVRVDLDHLNDIRHAVDIVKA----KKCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        74 a~~~-------~~av~l~~~~~~~~~~a~~l~~~----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      +-..       ...+.++. ..|++++|..+..+    .++......++..+...++.++|+..|.++-.
T Consensus       137 a~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  205 (275)
T 1xnf_A          137 FYQDDPNDPFRSLWLYLAE-QKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADAT  205 (275)
T ss_dssp             HHHHCTTCHHHHHHHHHHH-HHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHHHHHCC
T ss_pred             HHHhCCCChHHHHHHHHHH-HhcCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhcCHHHHHHHHHHHhc
Confidence            8421       12233344 45788888766532    23222233455556666666666666665443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=98.18  E-value=2.8e-05  Score=70.87  Aligned_cols=110  Identities=15%  Similarity=0.171  Sum_probs=83.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY  113 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~  113 (198)
                      ..+.+..+|..+...|++++|+++|.++=..        ...-.++. .+|++++|....++    .| ..+....+|..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~-~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~   86 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQ-QQGKLQEALMHYKEAIRISPTFADAYSNMGNT   86 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4578889999999999999999999998422        23344555 78999998776543    23 35556678888


Q ss_pred             HHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        114 CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       114 ~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +...|++++|++.|.++      ++                + .+..++.+..+|..|...|++++|
T Consensus        87 l~~~g~~~~A~~~~~kA------l~----------------l-~P~~~~a~~~Lg~~~~~~g~~~eA  130 (723)
T 4gyw_A           87 LKEMQDVQGALQCYTRA------IQ----------------I-NPAFADAHSNLASIHKDSGNIPEA  130 (723)
T ss_dssp             HHHTTCHHHHHHHHHHH------HH----------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHH------HH----------------h-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            88888888888887653      11                1 234678889999999999999888

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.16  E-value=0.00011  Score=56.38  Aligned_cols=162  Identities=11%  Similarity=0.046  Sum_probs=90.4

Q ss_pred             ccccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--HH-
Q psy12373          3 WGALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-SATTFIQYAKAKEAMGSYRESVGAYERAED--YD-   78 (198)
Q Consensus         3 ~~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--~~-   78 (198)
                      |.....|..| ..|.+.|++++|+..|.++      .......+ .+..+..+|..+...|++++|++.|.+.-.  +. 
T Consensus         2 ~~~~~~~~~a-~~~~~~g~~~~A~~~~~~~------~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            2 NPPNEIYATA-QQKLQDGNWRQAITQLEAL------DNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             -CHHHHHHHH-HHHHHHTCHHHHHHHHHHH------HHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CCHHHHHHHH-HHHHHcCCHHHHHHHHHHH------HHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            3333445554 4455568888888888543      22211111 246788999999999999999999988631  11 


Q ss_pred             ----HHH----HHHhh-----------------ccCCHHHHHHHHHh----cCCHH----HHHHHHHHHHhcCCH-HHHH
Q psy12373         79 ----NVV----RVDLD-----------------HLNDIRHAVDIVKA----KKCTE----GAKRIADYCNKHGDF-GAAI  124 (198)
Q Consensus        79 ----~av----~l~~~-----------------~~~~~~~a~~l~~~----~~~~~----~~~~~A~~~~~~g~~-~~Av  124 (198)
                          .+.    .++..                 ..|++++|+...++    .|+..    ....++......+.. -...
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a  154 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVA  154 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence                111    11110                 24677777665542    23211    111222222111111 1234


Q ss_pred             HHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCC--CHHHHHHHHHHHHhCCChhhH
Q psy12373        125 HFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEP--NPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       125 ~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .+|.+.|++.+|+....+         ++..-+..  .++.+..++..+...|++++|
T Consensus       155 ~~~~~~~~~~~A~~~~~~---------~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A  203 (225)
T 2yhc_A          155 EYYTERGAWVAVVNRVEG---------MLRDYPDTQATRDALPLMENAYRQMQMNAQA  203 (225)
T ss_dssp             HHHHHHTCHHHHHHHHHH---------HHHHSTTSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHcCcHHHHHHHHHH---------HHHHCcCCCccHHHHHHHHHHHHHcCCcHHH
Confidence            566667777777666532         21122322  257899999999999999888

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.15  E-value=3.4e-05  Score=56.53  Aligned_cols=62  Identities=8%  Similarity=-0.025  Sum_probs=42.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      ++..+..+|..+...|++++|+++|.++      +++--                .++.....+|..+...|++++|+..
T Consensus        69 ~~~~~~~lg~~~~~~g~~~~Ai~~~~~a------l~l~P----------------~~~~~~~~lg~~~~~lg~~~eA~~~  126 (151)
T 3gyz_A           69 NVDYIMGLAAIYQIKEQFQQAADLYAVA------FALGK----------------NDYTPVFHTGQCQLRLKAPLKAKEC  126 (151)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHSS----------------SCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHccHHHHHHHHHHH------HhhCC----------------CCcHHHHHHHHHHHHcCCHHHHHHH
Confidence            5566666666666666666666666665      33221                2345566889999999999999988


Q ss_pred             HHHc
Q psy12373        127 LILS  130 (198)
Q Consensus       127 y~~a  130 (198)
                      |.++
T Consensus       127 ~~~a  130 (151)
T 3gyz_A          127 FELV  130 (151)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.12  E-value=0.00031  Score=51.90  Aligned_cols=67  Identities=9%  Similarity=0.097  Sum_probs=49.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      ...++..+|..+...|++++|+.+|.++      +.++. ..++.....         .....+|..+...|++++|+.+
T Consensus        25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~~-~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A~~~   88 (203)
T 3gw4_A           25 ASGARFMLGYVYAFMDRFDEARASFQAL------QQQAQ-KSGDHTAEH---------RALHQVGMVERMAGNWDAARRC   88 (203)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-TTCCHHHHH---------HHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCcHHHHHHHHHHH------HHHHH-HcCCcHHHH---------HHHHHHHHHHHHcCCHHHHHHH
Confidence            4567788999999999999999999988      77777 555543221         1234577788888888888877


Q ss_pred             HHH
Q psy12373        127 LIL  129 (198)
Q Consensus       127 y~~  129 (198)
                      |.+
T Consensus        89 ~~~   91 (203)
T 3gw4_A           89 FLE   91 (203)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.11  E-value=0.00015  Score=59.24  Aligned_cols=49  Identities=10%  Similarity=0.156  Sum_probs=29.3

Q ss_pred             HHHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         26 ATCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ..+|...|+++.+...+.       ..++    ...+..+|..+...|++++|+++|.++
T Consensus       194 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  253 (406)
T 3sf4_A          194 GNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT  253 (406)
T ss_dssp             HHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            344555566665544443       2222    225666777777888888887777765

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.08  E-value=5.8e-05  Score=63.62  Aligned_cols=70  Identities=10%  Similarity=0.050  Sum_probs=39.6

Q ss_pred             cchHHHHHHHHHHcCC-----------H------HHHHHHHHHccCHHHHHhhhh-------c------cCChHHHHHHH
Q psy12373          6 LTLDRGKWTLYESAGN-----------Y------EKAATCYIQLKNWTKIGQLLP-------H------IKSATTFIQYA   55 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~-----------~------~~Ai~~y~~~~~~~~a~~l~~-------~------~~~~~l~~~~A   55 (198)
                      +|++++|.++|.++=+           +      .....+|...|++++|.....       .      ...+.++...|
T Consensus        64 ~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g  143 (472)
T 4g1t_A           64 KGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEG  143 (472)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHH
Confidence            3677777777766411           1      122335566677776544432       1      12345555555


Q ss_pred             HHHH--HcCCHHHHHHHHHHhc
Q psy12373         56 KAKE--AMGSYRESVGAYERAE   75 (198)
Q Consensus        56 ~~~e--~~g~~~~A~~~Y~ka~   75 (198)
                      ..+-  ..++|++|+++|.++-
T Consensus       144 ~~~~~~~~~~y~~A~~~~~kal  165 (472)
T 4g1t_A          144 WTRLKCGGNQNERAKVCFEKAL  165 (472)
T ss_dssp             HHHHHHCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHccccHHHHHHHHHHHH
Confidence            4443  3457888888888763

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.04  E-value=0.00018  Score=49.60  Aligned_cols=93  Identities=16%  Similarity=0.178  Sum_probs=68.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN   89 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~   89 (198)
                      ..-+..|.+.|++++|+++|.++      .++  ...++.++..+|..+...|++++|++.|.++      +++.-    
T Consensus         8 ~~~g~~~~~~~~~~~A~~~~~~a------l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------l~~~p----   69 (126)
T 3upv_A            8 RLEGKEYFTKSDWPNAVKAYTEM------IKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA------IEKDP----   69 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHH------HHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCC----
Confidence            34456667778888888887554      222  2346788899999999999999999999887      54422    


Q ss_pred             CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                                  .++.....+|..+...|++++|+..|.++-.
T Consensus        70 ------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           70 ------------NFVRAYIRKATAQIAVKEYASALETLDAART  100 (126)
T ss_dssp             ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ------------CcHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence                        1344566788899999999999888876533

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.03  E-value=0.00024  Score=48.21  Aligned_cols=114  Identities=19%  Similarity=0.146  Sum_probs=73.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      .-+..|...|+++.|++.|.++-      .+  ..++...+..+|..+...|++++|+++|.++      +++.-     
T Consensus        17 ~~~~~~~~~~~~~~A~~~~~~~~------~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~~~-----   77 (131)
T 2vyi_A           17 TEGNEQMKVENFEAAVHFYGKAI------EL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERA------ICIDP-----   77 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-----
T ss_pred             HHHHHHHHccCHHHHHHHHHHHH------Hc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHH------HhcCc-----
Confidence            34555666677777777665431      11  2235677788888888899999888888876      43321     


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHH
Q psy12373         91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIH  170 (198)
Q Consensus        91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  170 (198)
                                 .++.....+|..+...|++++|+..|.++-.                      + .+.++.....++..
T Consensus        78 -----------~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~----------------------~-~p~~~~~~~~l~~~  123 (131)
T 2vyi_A           78 -----------AYSKAYGRMGLALSSLNKHVEAVAYYKKALE----------------------L-DPDNETYKSNLKIA  123 (131)
T ss_dssp             -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------H-STTCHHHHHHHHHH
T ss_pred             -----------cCHHHHHHHHHHHHHhCCHHHHHHHHHHHHh----------------------c-CccchHHHHHHHHH
Confidence                       1234455677777778887777766654321                      1 23356777788888


Q ss_pred             HHhCCCh
Q psy12373        171 FEEDKGV  177 (198)
Q Consensus       171 ~e~~g~~  177 (198)
                      +...|++
T Consensus       124 ~~~~~~~  130 (131)
T 2vyi_A          124 ELKLREA  130 (131)
T ss_dssp             HHHHTTC
T ss_pred             HHHHhcC
Confidence            8777765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.00  E-value=0.00011  Score=53.14  Aligned_cols=88  Identities=20%  Similarity=0.238  Sum_probs=55.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR   92 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~   92 (198)
                      +..|.+.|++++|+.+|.++      ..+  ...++..+..+|..+...|++++|+++|.++      +++.-       
T Consensus        28 g~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~l~p-------   86 (148)
T 2vgx_A           28 AFNQYQSGXYEDAHXVFQAL------CVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYG------AVMDI-------   86 (148)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHST-------
T ss_pred             HHHHHHcCChHHHHHHHHHH------HHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH------HhcCC-------
Confidence            33444455555555555322      111  2235666667777777777777777777665      33321       


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                               .++.....+|..+...|++++|+..|.++
T Consensus        87 ---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  115 (148)
T 2vgx_A           87 ---------XEPRFPFHAAECLLQXGELAEAESGLFLA  115 (148)
T ss_dssp             ---------TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---------CCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                     23445667899999999999999988765

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.99  E-value=5e-05  Score=57.84  Aligned_cols=95  Identities=13%  Similarity=0.040  Sum_probs=58.6

Q ss_pred             HHHHHcCCHHHHHHHHHHccCH--HHHHhhhh----ccC--ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         14 TLYESAGNYEKAATCYIQLKNW--TKIGQLLP----HIK--SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~~--~~a~~l~~----~~~--~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      ..+...|+++.|+.+|.++-..  +...-...    ...  .+.+...+|..+...|++++|+.+|.++      +++.-
T Consensus        12 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p   85 (208)
T 3urz_A           12 SAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL------LQKAP   85 (208)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHCC
Confidence            3444668888888888754221  11100000    000  2223334899999999999999999887      43321


Q ss_pred             hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                      .++.....+|..+...|++++|+..|.++
T Consensus        86 ----------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  114 (208)
T 3urz_A           86 ----------------NNVDCLEACAEMQVCRGQEKDALRMYEKI  114 (208)
T ss_dssp             ----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                            12444556778888888888888887765

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.99  E-value=0.00043  Score=52.83  Aligned_cols=105  Identities=17%  Similarity=0.185  Sum_probs=61.2

Q ss_pred             HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC----CHHHHHHHHHHhc---CHHHHH---HH
Q psy12373         14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG----SYRESVGAYERAE---DYDNVV---RV   83 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g----~~~~A~~~Y~ka~---~~~~av---~l   83 (198)
                      .+|...|++++|++.|.++      .    ...++..+..+|..+.. +    ++++|+++|.++-   +.....   .+
T Consensus        26 ~~~~~~~~~~~A~~~~~~a------~----~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~~   94 (212)
T 3rjv_A           26 DTWVSSGDYQKAEYWAQKA------A----AQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAGSKSGEIVLARV   94 (212)
T ss_dssp             HHHHHHTCHHHHHHHHHHH------H----HTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHhcCCCHHHHHHHHHHH------H----HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            3444445555555555433      1    23467777788888777 6    7888888888772   222222   22


Q ss_pred             Hhhc----cCCHHHHHHHHHh---cCC----HHHHHHHHHHHHh----cCCHHHHHHHHHHc
Q psy12373         84 DLDH----LNDIRHAVDIVKA---KKC----TEGAKRIADYCNK----HGDFGAAIHFLILS  130 (198)
Q Consensus        84 ~~~~----~~~~~~a~~l~~~---~~~----~~~~~~~A~~~~~----~g~~~~Av~~y~~a  130 (198)
                      +. .    .+++++|+...++   ..+    +.....++..+..    .+++++|+.+|.++
T Consensus        95 y~-~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A  155 (212)
T 3rjv_A           95 LV-NRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS  155 (212)
T ss_dssp             HT-CGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred             HH-cCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence            33 2    4577777665553   223    4555667777766    56677777666655

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=97.97  E-value=0.00021  Score=54.17  Aligned_cols=123  Identities=13%  Similarity=0.104  Sum_probs=83.0

Q ss_pred             chHHHHHHHHHHcC-----C---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAG-----N---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g-----~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      |++++|..+|.++-     +   +.....+|...|+++.+...+.+     ..+..++..+|..+...|++++|+++|.+
T Consensus        37 ~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~  116 (243)
T 2q7f_A           37 GDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEK  116 (243)
T ss_dssp             -----CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            55555555555541     1   11234455666677766555542     23678888999999999999999999998


Q ss_pred             hcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         74 AED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        74 a~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +-.        +.....++. ..|++++|..+.++    .+ ++.....+|..+...|++++|+..|.++
T Consensus       117 ~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  185 (243)
T 2q7f_A          117 ALRAGMENGDLFYMLGTVLV-KLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAV  185 (243)
T ss_dssp             HHHHTCCSHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            642        234456667 78999999887654    23 3555667899999999999999988775

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.97  E-value=0.00014  Score=51.71  Aligned_cols=88  Identities=17%  Similarity=0.217  Sum_probs=59.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR   92 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~   92 (198)
                      +..|.+.|+++.|+++|.++      ..+  ...++..+..+|..+...|++++|+++|.++      +++.-       
T Consensus        25 a~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p-------   83 (142)
T 2xcb_A           25 GFNQYQAGKWDDAQKIFQAL------CML--DHYDARYFLGLGACRQSLGLYEQALQSYSYG------ALMDI-------   83 (142)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-------
T ss_pred             HHHHHHHccHHHHHHHHHHH------HHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHH------HhcCC-------
Confidence            34455556666666665332      111  2346777888888888888888888888876      44322       


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                               .++.....+|..+...|++++|+..|.++
T Consensus        84 ---------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  112 (142)
T 2xcb_A           84 ---------NEPRFPFHAAECHLQLGDLDGAESGFYSA  112 (142)
T ss_dssp             ---------TCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---------CCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                     23445567899999999999999988664

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.96  E-value=0.00012  Score=63.92  Aligned_cols=110  Identities=14%  Similarity=0.020  Sum_probs=67.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY  113 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~  113 (198)
                      +...+..+|..+...|++++|+++|.++-.        +...-.++. ..|++++|....++    .| ++.....+|..
T Consensus        22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~  100 (568)
T 2vsy_A           22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRW-TQQRHAEAAVLLQQASDAAPEHPGIALWLGHA  100 (568)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            456666777777777777777777776632        122334444 56677776655442    12 34455567777


Q ss_pred             HHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhC---CChhhH
Q psy12373        114 CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEED---KGVLTS  180 (198)
Q Consensus       114 ~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~---g~~~~A  180 (198)
                      +...|++++|++.|.++-.                      + .+..+..+..++..+...   |++++|
T Consensus       101 ~~~~g~~~~A~~~~~~al~----------------------~-~p~~~~~~~~l~~~~~~~~~~g~~~~A  147 (568)
T 2vsy_A          101 LEDAGQAEAAAAAYTRAHQ----------------------L-LPEEPYITAQLLNWRRRLCDWRALDVL  147 (568)
T ss_dssp             HHHTTCHHHHHHHHHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCCTTHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH----------------------h-CCCCHHHHHHHHHHHHHhhccccHHHH
Confidence            7777777777766654311                      1 123566777778877777   666666

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.94  E-value=0.00014  Score=52.85  Aligned_cols=91  Identities=19%  Similarity=0.095  Sum_probs=66.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN   89 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~   89 (198)
                      ..-+..|.+.|++++|+++|.++      .++  ...+..++..+|..+...|++++|+++|.++      +++.-    
T Consensus        15 ~~~g~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a------l~~~p----   76 (164)
T 3sz7_A           15 KSEGNAAMARKEYSKAIDLYTQA------LSI--APANPIYLSNRAAAYSASGQHEKAAEDAELA------TVVDP----   76 (164)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH------HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH------HHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHH------HHhCC----
Confidence            34456666778888888777554      222  2336788889999999999999999998887      54432    


Q ss_pred             CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                  .++.....+|..+...|++++|+..|.++
T Consensus        77 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  105 (164)
T 3sz7_A           77 ------------KYSKAWSRLGLARFDMADYKGAKEAYEKG  105 (164)
T ss_dssp             ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------------CCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence                        12445667899999999999999988765

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.93  E-value=0.00052  Score=48.06  Aligned_cols=90  Identities=13%  Similarity=0.228  Sum_probs=61.3

Q ss_pred             HHHHHHHccCHHHHHhhhh-------ccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHH
Q psy12373         25 AATCYIQLKNWTKIGQLLP-------HIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRH   93 (198)
Q Consensus        25 Ai~~y~~~~~~~~a~~l~~-------~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~   93 (198)
                      ...+|...|+++++...+.       ...+    ...+..+|..+...|++++|+++|.++      +.+.. ..++...
T Consensus        55 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------~~~~~-~~~~~~~  127 (164)
T 3ro3_A           55 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH------LAIAQ-ELKDRIG  127 (164)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HTTCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH------HHHHH-HccchHh
Confidence            4455566677776655543       2222    345667899999999999999999887      77766 4444321


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         94 AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        94 a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .         ......+|..+...|++++|+++|.++
T Consensus       128 ~---------~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A          128 E---------GRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             H---------HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             H---------HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            1         122446788888899999998887654

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=97.92  E-value=0.0004  Score=58.42  Aligned_cols=168  Identities=17%  Similarity=0.032  Sum_probs=96.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHH-----------
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDN-----------   79 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~-----------   79 (198)
                      =+..|...|++++|+++|.++-...+-..... .......+..+|..+...|++++|+.+|.++-....           
T Consensus        57 Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~  136 (472)
T 4g1t_A           57 LAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESP  136 (472)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhH
Confidence            35667788999999998877643322111111 122344567889999999999999999998843311           


Q ss_pred             -------HHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH---HHhcCCHHHHHHHHHHcCC----hHHH-HHH
Q psy12373         80 -------VVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY---CNKHGDFGAAIHFLILSKC----YQDA-FNL  139 (198)
Q Consensus        80 -------av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~---~~~~g~~~~Av~~y~~ag~----~~~A-~~l  139 (198)
                             ...+.. ..+++++|...-++    .| +++....++..   +...++.++|++.|.++=.    ...+ ..+
T Consensus       137 ~~~~~~g~~~~~~-~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l  215 (472)
T 4g1t_A          137 ELDCEEGWTRLKC-GGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLL  215 (472)
T ss_dssp             HHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHH
T ss_pred             HHHHHHHHHHHHH-ccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHH
Confidence                   011222 23567888765443    23 34444444443   4556777778877766421    1121 111


Q ss_pred             H----H---HcchhhHHhhhhh--hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        140 S----Q---QHKKLHEFGKFLL--EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       140 a----~---~~~~~~~~~~~~~--l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +    .   ..+.++.....+.  +. .+..+..+..+|..|...|++.+|
T Consensus       216 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A  266 (472)
T 4g1t_A          216 ALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKA  266 (472)
T ss_dssp             HHHHHHCC------CHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHcCchHHH
Confidence            1    1   1122222222211  22 456788999999999999999888

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=97.92  E-value=0.0003  Score=47.66  Aligned_cols=107  Identities=16%  Similarity=0.220  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc----C-CHHHHHHHHHHHHh
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK----K-CTEGAKRIADYCNK  116 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~----~-~~~~~~~~A~~~~~  116 (198)
                      .+..+|..+...|++++|+++|.++-.        +.....++. ..|++++|..+.++.    + ++.....++..+..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY-KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHH-HhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            456778888888999999998887632        233455566 668888887765532    2 23344455666666


Q ss_pred             cCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        117 HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       117 ~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .|++++|+.+|.++-.                      + .+..+..+..++..+...|++++|
T Consensus        82 ~~~~~~A~~~~~~~~~----------------------~-~~~~~~~~~~la~~~~~~~~~~~A  122 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALE----------------------L-DPRSAEAWYNLGNAYYKQGDYDEA  122 (136)
T ss_dssp             TTCHHHHHHHHHHHHH----------------------H-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             hcCHHHHHHHHHHHHH----------------------h-CCCChHHHHHHHHHHHHHccHHHH
Confidence            6666666555443211                      1 233577888899999888888887

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.91  E-value=0.00069  Score=54.41  Aligned_cols=153  Identities=14%  Similarity=0.059  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHcCC---------HHHHHHHHHHccCHHHHHhhhhc---c--CChH-HHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          9 DRGKWTLYESAGN---------YEKAATCYIQLKNWTKIGQLLPH---I--KSAT-TFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         9 ~~~Aa~~y~~~g~---------~~~Ai~~y~~~~~~~~a~~l~~~---~--~~~~-l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      +++|...|+++=.         +...+.++...|+++.|..+..+   +  .++. ++..+|..+...|++++|.+.|.+
T Consensus        80 ~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  159 (308)
T 2ond_A           80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            4677777766522         12344555566777776655542   1  2454 788889999999999999999998


Q ss_pred             hcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373         74 AEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLS  140 (198)
Q Consensus        74 a~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la  140 (198)
                      +-..        .....+.....|++++|..+-++    .| ++.....++.++.+.|++++|+.+|.++=..       
T Consensus       160 a~~~~p~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~-------  232 (308)
T 2ond_A          160 AREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS-------  232 (308)
T ss_dssp             HHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHS-------
T ss_pred             HHhcCCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-------
Confidence            7431        11111211125888888766543    23 3445556777777778887777777654210       


Q ss_pred             HHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        141 QQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       141 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                         .         .+.++..+.+....+.+....|+++.|
T Consensus       233 ---~---------~l~p~~~~~l~~~~~~~~~~~g~~~~a  260 (308)
T 2ond_A          233 ---G---------SLPPEKSGEIWARFLAFESNIGDLASI  260 (308)
T ss_dssp             ---S---------SSCGGGCHHHHHHHHHHHHHHSCHHHH
T ss_pred             ---c---------CCCHHHHHHHHHHHHHHHHHcCCHHHH
Confidence               0         012223566777777777777777666

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.89  E-value=0.0004  Score=47.12  Aligned_cols=98  Identities=21%  Similarity=0.235  Sum_probs=67.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN   89 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~   89 (198)
                      -.-+..|...|+++.|+.+|.++-      .+  ...++.++..+|..+...|++++|+.+|.++      +.+.-...+
T Consensus         8 ~~l~~~~~~~~~~~~A~~~~~~a~------~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------~~~~~~~~~   73 (131)
T 1elr_A            8 KELGNDAYKKKDFDTALKHYDKAK------EL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKA------IEVGRENRE   73 (131)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHSTT
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHH------hc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHH------Hhhccccch
Confidence            344566777788888888775542      11  2236778889999999999999999999887      666552222


Q ss_pred             CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .+...         +.....+|..+...|++++|++.|.++
T Consensus        74 ~~~~~---------~~~~~~la~~~~~~~~~~~A~~~~~~~  105 (131)
T 1elr_A           74 DYRQI---------AKAYARIGNSYFKEEKYKDAIHFYNKS  105 (131)
T ss_dssp             CHHHH---------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHH---------HHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            22110         233456788888888888888877654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.86  E-value=0.00027  Score=50.40  Aligned_cols=89  Identities=26%  Similarity=0.224  Sum_probs=58.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCH
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDI   91 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~   91 (198)
                      -+..|...|++++|+.+|.++-      ++  ...+..++..+|..+...|++++|+++|.++      +++.-      
T Consensus        19 ~a~~~~~~~~~~~A~~~~~~al------~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~~~------   78 (166)
T 1a17_A           19 QANDYFKAKDYENAIKFYSQAI------EL--NPSNAIYYGNRSLAYLRTECYGYALGDATRA------IELDK------   78 (166)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH------HH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT------
T ss_pred             HHHHHHHccCHHHHHHHHHHHH------Hh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCc------
Confidence            3445556666676666665431      11  2236778888999999999999999998886      44322      


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         92 RHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        92 ~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                .++.....+|..+...|++++|+..|.++
T Consensus        79 ----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  107 (166)
T 1a17_A           79 ----------KYIKGYYRRAASNMALGKFRAALRDYETV  107 (166)
T ss_dssp             ----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----------ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                      12334556777777777777777666543

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=97.86  E-value=8.1e-05  Score=54.49  Aligned_cols=89  Identities=11%  Similarity=-0.004  Sum_probs=69.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+..+|..+...|++++|+++|.++      +.+--                .++.....+|..+...|++++|+..
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~a------l~~~P----------------~~~~~~~~lg~~~~~~g~~~~Ai~~   92 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFL------CIYDF----------------YNVDYIMGLAAIYQIKEQFQQAADL   92 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CCHHHHHHHHHHHHHHccHHHHHHH
Confidence            5667888999999999999999999987      43321                1344555788888899999998888


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++=.                      +. +.+|..+..+|..|...|++++|
T Consensus        93 ~~~al~----------------------l~-P~~~~~~~~lg~~~~~lg~~~eA  123 (151)
T 3gyz_A           93 YAVAFA----------------------LG-KNDYTPVFHTGQCQLRLKAPLKA  123 (151)
T ss_dssp             HHHHHH----------------------HS-SSCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHh----------------------hC-CCCcHHHHHHHHHHHHcCCHHHH
Confidence            866522                      23 34678899999999999999998

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.85  E-value=0.00031  Score=57.65  Aligned_cols=92  Identities=16%  Similarity=0.212  Sum_probs=63.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-------------SATTFIQYAKAKEAMGSYRESVGAYERAEDY   77 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-------------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~   77 (198)
                      .-+..|.+.|+++.|+.+|.++      .++.....             ...++..+|..+...|++++|+++|.++   
T Consensus       152 ~~g~~~~~~g~~~~A~~~y~~A------l~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a---  222 (336)
T 1p5q_A          152 ERGTVYFKEGKYKQALLQYKKI------VSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA---  222 (336)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH------HHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH------HHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH---
Confidence            3455666778888888877654      22222111             0478888999999999999999999987   


Q ss_pred             HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         78 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        78 ~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                         +++.-                .++.....+|..+...|++++|+..|.++
T Consensus       223 ---l~~~p----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a  256 (336)
T 1p5q_A          223 ---LELDS----------------NNEKGLSRRGEAHLAVNDFELARADFQKV  256 (336)
T ss_dssp             ---HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---HHhCC----------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence               54422                13444567788888888888888877654

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.85  E-value=0.00032  Score=56.14  Aligned_cols=137  Identities=9%  Similarity=-0.068  Sum_probs=85.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------HHHHH
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY---------DNVVR   82 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---------~~av~   82 (198)
                      .+..+.+.|+++.|+..|.++      ..  ...+++..+..+|..+...|++++|+..|.++-..         ...+.
T Consensus       123 ~a~~~~~~g~~~~A~~~~~~a------l~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~  194 (287)
T 3qou_A          123 QAMQLMQESNYTDALPLLXDA------WQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIE  194 (287)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH------HH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHH
T ss_pred             HHHHHHhCCCHHHHHHHHHHH------HH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHH
Confidence            344455566666666666443      11  13347788999999999999999999999998431         11111


Q ss_pred             HHhhccCCHHHHHHHH----HhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcC
Q psy12373         83 VDLDHLNDIRHAVDIV----KAKK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEED  157 (198)
Q Consensus        83 l~~~~~~~~~~a~~l~----~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~  157 (198)
                       +. ..++.++|....    ...| ++.....+|..+...|++++|+..|.++=.                      +.+
T Consensus       195 -l~-~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~----------------------~~p  250 (287)
T 3qou_A          195 -LL-XQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLR----------------------XDL  250 (287)
T ss_dssp             -HH-HHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HCT
T ss_pred             -HH-hhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHh----------------------ccc
Confidence             11 223444443322    2233 355566778888878877777776654311                      222


Q ss_pred             -CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        158 -EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       158 -~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                       ..++..+..++..|...|+.+.|
T Consensus       251 ~~~~~~a~~~l~~~~~~~g~~~~a  274 (287)
T 3qou_A          251 TAADGQTRXTFQEILAALGTGDAL  274 (287)
T ss_dssp             TGGGGHHHHHHHHHHHHHCTTCHH
T ss_pred             ccccchHHHHHHHHHHHcCCCCcH
Confidence             22367788899999888888777

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.85  E-value=0.00041  Score=50.11  Aligned_cols=101  Identities=14%  Similarity=0.023  Sum_probs=69.9

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh----------ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP----------HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY   77 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~----------~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~   77 (198)
                      .+.+-+..|.+.|+++.|++.|.++-....-.....          ......++..+|..+...|++++|+..|.++   
T Consensus        13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a---   89 (162)
T 3rkv_A           13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV---   89 (162)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH---
Confidence            355666777888999999999977633311110000          1113367788899999999999999888887   


Q ss_pred             HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         78 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        78 ~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                         +++--                .++.....+|..+...|++++|+..|.++
T Consensus        90 ---l~~~p----------------~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  123 (162)
T 3rkv_A           90 ---LKREE----------------TNEKALFRRAKARIAAWKLDEAEEDLKLL  123 (162)
T ss_dssp             ---HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---HhcCC----------------cchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence               55422                23445667899999999999999888765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=97.85  E-value=9.9e-05  Score=63.55  Aligned_cols=124  Identities=11%  Similarity=0.047  Sum_probs=88.4

Q ss_pred             cchH-HHHHHHHHHc-----C---CHHHHHHHHHHccCHHHHHhhhhc----cCChHHHHHHHHHHHHc---------CC
Q psy12373          6 LTLD-RGKWTLYESA-----G---NYEKAATCYIQLKNWTKIGQLLPH----IKSATTFIQYAKAKEAM---------GS   63 (198)
Q Consensus         6 ~~~~-~~Aa~~y~~~-----g---~~~~Ai~~y~~~~~~~~a~~l~~~----~~~~~l~~~~A~~~e~~---------g~   63 (198)
                      .++| ++|.++|.++     +   -+.....+|...|+++.|...+.+    -++...+..+|..+...         |+
T Consensus       115 ~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~lg~~~~~~~~~~~~~~~g~  194 (474)
T 4abn_A          115 TPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNLSMVLRQLQTDSGDEHSRH  194 (474)
T ss_dssp             SSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCCSCHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhccCChhhhhhh
Confidence            3566 7777777664     1   123344566677778777666542    23567888999999999         99


Q ss_pred             HHHHHHHHHHhcC--------HHHHHHHHhhcc--------CCHHHHHHHHHh----cC----CHHHHHHHHHHHHhcCC
Q psy12373         64 YRESVGAYERAED--------YDNVVRVDLDHL--------NDIRHAVDIVKA----KK----CTEGAKRIADYCNKHGD  119 (198)
Q Consensus        64 ~~~A~~~Y~ka~~--------~~~av~l~~~~~--------~~~~~a~~l~~~----~~----~~~~~~~~A~~~~~~g~  119 (198)
                      +++|+++|.++-.        +...-.++. ..        |++++|....++    .|    ++.....+|..+...|+
T Consensus       195 ~~~A~~~~~~al~~~p~~~~~~~~lg~~~~-~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~  273 (474)
T 4abn_A          195 VMDSVRQAKLAVQMDVLDGRSWYILGNAYL-SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEES  273 (474)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCC
Confidence            9999999999742        233344444 55        788988776543    33    45566789999999999


Q ss_pred             HHHHHHHHHHc
Q psy12373        120 FGAAIHFLILS  130 (198)
Q Consensus       120 ~~~Av~~y~~a  130 (198)
                      +++|++.|.++
T Consensus       274 ~~~A~~~~~~a  284 (474)
T 4abn_A          274 YGEALEGFSQA  284 (474)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999887

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.85  E-value=0.00037  Score=58.63  Aligned_cols=111  Identities=7%  Similarity=-0.030  Sum_probs=76.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCC-HHHHHHHHHHhcCH--------HHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGS-YRESVGAYERAEDY--------DNVV   81 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~-~~~A~~~Y~ka~~~--------~~av   81 (198)
                      -.+.+|...|++++|+++|.++      .++  ..++...+..+|..+...|. +++|+++|.++-..        ...-
T Consensus       102 ~lg~~~~~~g~~~~Al~~~~~a------l~l--~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g  173 (382)
T 2h6f_A          102 YFRAVLQRDERSERAFKLTRDA------IEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRR  173 (382)
T ss_dssp             HHHHHHHHTCCCHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHH------HHh--CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            3455667777777777777543      222  33467888899999999996 99999999988421        2222


Q ss_pred             HHHhhccCCHHHHHHHHHh----c-CCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         82 RVDLDHLNDIRHAVDIVKA----K-KCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        82 ~l~~~~~~~~~~a~~l~~~----~-~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .++. .+|++++|+...++    . .+......++..+...|++++|+.+|.++
T Consensus       174 ~~~~-~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a  226 (382)
T 2h6f_A          174 VLVE-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  226 (382)
T ss_dssp             HHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             HHHH-HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            3344 66788887766543    2 23455556788888888888888888765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=97.84  E-value=0.00013  Score=57.34  Aligned_cols=74  Identities=22%  Similarity=0.263  Sum_probs=49.6

Q ss_pred             HHHHHHccCHHHHHhhhhc-------c--C----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---------------
Q psy12373         26 ATCYIQLKNWTKIGQLLPH-------I--K----SATTFIQYAKAKEAMGSYRESVGAYERAEDY---------------   77 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~-------~--~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---------------   77 (198)
                      ..+|...|+++.|...+.+       .  .    ...++..+|..+...|++++|+++|.++-..               
T Consensus       118 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~  197 (311)
T 3nf1_A          118 AVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKT  197 (311)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHH
T ss_pred             HHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3455566677665554431       1  1    3345677899999999999999999887433               


Q ss_pred             -HHHHHHHhhccCCHHHHHHHHHh
Q psy12373         78 -DNVVRVDLDHLNDIRHAVDIVKA  100 (198)
Q Consensus        78 -~~av~l~~~~~~~~~~a~~l~~~  100 (198)
                       ....+++. ..|++++|..+.++
T Consensus       198 ~~~la~~~~-~~g~~~~A~~~~~~  220 (311)
T 3nf1_A          198 KNNLASCYL-KQGKFKQAETLYKE  220 (311)
T ss_dssp             HHHHHHHHH-HHTCHHHHHHHHHH
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHH
Confidence             22345556 67899998876643

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.84  E-value=3.5e-05  Score=66.22  Aligned_cols=98  Identities=5%  Similarity=-0.110  Sum_probs=66.8

Q ss_pred             cCCHHHHHHHHHHccCHHHHHhhhh-ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHH
Q psy12373         19 AGNYEKAATCYIQLKNWTKIGQLLP-HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI   97 (198)
Q Consensus        19 ~g~~~~Ai~~y~~~~~~~~a~~l~~-~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l   97 (198)
                      .|++++|+.+|.++-.... ..+-. +.+....+..+|..+..+|+|++|+.+|.++      +.+....+|.       
T Consensus       311 ~g~~~eA~~~~~~~L~i~~-~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a------L~i~~~~lG~-------  376 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMS-SVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI------IKPYSKHYPV-------  376 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHT-TTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHSCS-------
T ss_pred             ccCHHHHHHHHHHHHHHhh-CccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH------HHHHHHHcCC-------
Confidence            4677777777765532222 00111 1124456778999999999999999999998      7777755554       


Q ss_pred             HHhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         98 VKAKKCTEGAK-RIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        98 ~~~~~~~~~~~-~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                        .||+..... .+|..|...|++++|+.+|.+|-.
T Consensus       377 --~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          377 --YSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             --SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             --CChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence              233333333 689999999999999999877533

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=97.83  E-value=0.00026  Score=53.91  Aligned_cols=84  Identities=8%  Similarity=-0.001  Sum_probs=61.0

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---------HHHHHHhhccCCHHHHHHHHHh----cCC-HHHHHHHH
Q psy12373         46 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYD---------NVVRVDLDHLNDIRHAVDIVKA----KKC-TEGAKRIA  111 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---------~av~l~~~~~~~~~~a~~l~~~----~~~-~~~~~~~A  111 (198)
                      .++..+...|..+...|++++|+++|.++-...         ..-.++. ..|++++|.....+    .|+ +.....+|
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCAD-NIKKYKEAADYFDIAIKKNYNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHH-HhhcHHHHHHHHHHHHHhCcchHHHHHHHH
Confidence            367888899999999999999999999874321         2334455 67899998876653    233 33445678


Q ss_pred             HHHHhcCCHHHHHHHHHHc
Q psy12373        112 DYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       112 ~~~~~~g~~~~Av~~y~~a  130 (198)
                      ..+...|++++|+..|.++
T Consensus        84 ~~~~~~~~~~~A~~~~~~a  102 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEG  102 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHH
Confidence            8888888888888777654

>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B

Probab=97.83  E-value=0.0017  Score=55.05  Aligned_cols=128  Identities=7%  Similarity=0.026  Sum_probs=98.0

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHH-HHH-HHHHHHcCC--HHHHHHHHHHhcCHHHHHHHHh
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTF-IQY-AKAKEAMGS--YRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~-~~~-A~~~e~~g~--~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      ++-..-..-.||++.||++..+.+.|..|.-|+.. .+++++ .+. -.++.+...  .-..+=..+-.+++...|.-+ 
T Consensus       147 d~~I~~aLl~Gd~e~AV~~cl~~~r~adAllLA~~-gg~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~~~-  224 (399)
T 2pm7_A          147 EQTISKNLVSGNIKSAVKNSLENDLMMEAMVIALD-SNNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVENL-  224 (399)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHTT-CCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHHHB-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHCCChHHHHHHHHh-cCHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHhcC-
Confidence            44444455679999999999999999999888754 456666 443 457766653  444555677789999998865 


Q ss_pred             hccCCHHHHHHHHHhcCCHH------HHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373         86 DHLNDIRHAVDIVKAKKCTE------GAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLS  140 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~~~------~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la  140 (198)
                       .+++|.+++.++-.+.+++      .+..+|+.++..|+...|.-.|+-||+.++.+.+=
T Consensus       225 -~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW  284 (399)
T 2pm7_A          225 -DVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIW  284 (399)
T ss_dssp             -CGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred             -ChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHH
Confidence             6899999888776554433      33478999999999999999999999999988874

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.81  E-value=0.00035  Score=46.51  Aligned_cols=90  Identities=19%  Similarity=0.168  Sum_probs=62.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      .-+..|...|+++.|+.+|.++-      .+  ...++..+..+|..+...|++++|+..|.++      +++.-     
T Consensus         9 ~~~~~~~~~~~~~~A~~~~~~~~------~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~~~-----   69 (118)
T 1elw_A            9 EKGNKALSVGNIDDALQCYSEAI------KL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT------VDLKP-----   69 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHCT-----
T ss_pred             HHHHHHHHcccHHHHHHHHHHHH------HH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHH------HHhCc-----
Confidence            44566667788888887775442      11  2236778888999999999999999888876      44322     


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                 .++.....+|..+...|++++|+..|.++
T Consensus        70 -----------~~~~~~~~~a~~~~~~~~~~~A~~~~~~~   98 (118)
T 1elw_A           70 -----------DWGKGYSRKAAALEFLNRFEEAKRTYEEG   98 (118)
T ss_dssp             -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----------ccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                       12344556788888888888888777654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.81  E-value=0.0007  Score=46.87  Aligned_cols=92  Identities=15%  Similarity=0.103  Sum_probs=63.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN   89 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~   89 (198)
                      -.-+..|...|+++.|+.+|.++      ..+  ...++.++..+|..+...|++++|+.+|.++      +++.-    
T Consensus        13 ~~~g~~~~~~~~~~~A~~~~~~a------l~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a------l~~~p----   74 (137)
T 3q49_B           13 KEQGNRLFVGRKYPEAAACYGRA------ITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRA------LELDG----   74 (137)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHH------Hhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCc----
Confidence            34556666677777777777543      222  2235677888888888888888888888776      44322    


Q ss_pred             CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                                  .++.....+|..+...|++++|+..|.++-
T Consensus        75 ------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           75 ------------QSVKAHFFLGQCQLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ------------hhHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence                        134456678899999999999998887653

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.81  E-value=0.0042  Score=50.58  Aligned_cols=79  Identities=14%  Similarity=0.013  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHH----------------HHHHHHhhccCCHHHHHHHHHhc----C---C---H
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYD----------------NVVRVDLDHLNDIRHAVDIVKAK----K---C---T  104 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~----------------~av~l~~~~~~~~~~a~~l~~~~----~---~---~  104 (198)
                      +..+|..+...|++++|+++|.++-...                ..-.++. ..|++++|....++.    +   +   .
T Consensus        96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLW-AWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH-HhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            4456777777777777777776653211                1122344 567777776655431    1   1   1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        105 EGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       105 ~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .....+|..+...|++++|+.++.++
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a  200 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRL  200 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            12234566667777777777766554

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.80  E-value=0.0016  Score=43.46  Aligned_cols=90  Identities=22%  Similarity=0.384  Sum_probs=58.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      .-+..|...|+++.|+++|.++-      ++  ...+...+..+|..+...|++++|+.+|.++      +++.-     
T Consensus        14 ~~~~~~~~~~~~~~A~~~~~~~~------~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~------~~~~~-----   74 (125)
T 1na0_A           14 NLGNAYYKQGDYDEAIEYYQKAL------EL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA------LELDP-----   74 (125)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH------HH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHhCC-----
Confidence            34556667777777777775441      11  2235677778888888888888888888776      33211     


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                 .++.....+|..+...|++++|+..|.++
T Consensus        75 -----------~~~~~~~~la~~~~~~~~~~~A~~~~~~~  103 (125)
T 1na0_A           75 -----------NNAEAWYNLGNAYYKQGDYDEAIEYYQKA  103 (125)
T ss_dssp             -----------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----------ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence                       12334456777777777777777766543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.80  E-value=0.00027  Score=49.22  Aligned_cols=88  Identities=14%  Similarity=-0.020  Sum_probs=63.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR   92 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~   92 (198)
                      +..+.+.|+++.|+.+|.++      .++  ..++...+..+|..+...|++++|+.+|.++      +++--       
T Consensus        24 g~~~~~~g~~~~A~~~~~~a------l~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------l~l~P-------   82 (121)
T 1hxi_A           24 GLSMLKLANLAEAALAFEAV------CQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHA------RMLDP-------   82 (121)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-------
T ss_pred             HHHHHHcCCHHHHHHHHHHH------HHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC-------
Confidence            34555667777777766433      222  3347788899999999999999999999887      54432       


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         93 HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        93 ~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                               .++.....+|..+...|++++|+..|.++
T Consensus        83 ---------~~~~~~~~la~~~~~~g~~~~A~~~~~~a  111 (121)
T 1hxi_A           83 ---------KDIAVHAALAVSHTNEHNANAALASLRAW  111 (121)
T ss_dssp             ---------TCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                     12344557888888889999998888765

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=97.79  E-value=0.00033  Score=49.16  Aligned_cols=88  Identities=16%  Similarity=0.010  Sum_probs=65.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ...+...|..+...|+|++|+++|.++      |++.-                .++.....+|..+...|++++|+..|
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~~~~~~~~~~~~~~A~~~~   70 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEA------VKRDP----------------ENAILYSNRAACLTKLMEFQRALDDC   70 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CCHHHHHHHhhHHHhhccHHHHHHHH
Confidence            345667899999999999999999887      44321                23445557788888888888888776


Q ss_pred             HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++      ++                + .+..+..+..+|..+...|++++|
T Consensus        71 ~~a------l~----------------~-~p~~~~a~~~lg~~~~~~~~~~~A  100 (126)
T 4gco_A           71 DTC------IR----------------L-DSKFIKGYIRKAACLVAMREWSKA  100 (126)
T ss_dssp             HHH------HH----------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHH------HH----------------h-hhhhhHHHHHHHHHHHHCCCHHHH
Confidence            543      11                2 234678899999999999999988

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=97.79  E-value=0.00078  Score=54.10  Aligned_cols=28  Identities=21%  Similarity=0.370  Sum_probs=25.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +..++..+|..++..|++++|.+.|.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a  125 (308)
T 2ond_A           98 NMLLYFAYADYEESRMKYEKVHSIYNRL  125 (308)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            5678889999999999999999999997

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.77  E-value=0.00047  Score=47.26  Aligned_cols=92  Identities=11%  Similarity=0.060  Sum_probs=63.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCCh---HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhcc
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSA---TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHL   88 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~---~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~   88 (198)
                      -+..|...|++++|++.|.+.      ...  ..+++   ..+..+|..+...|++++|+++|.++      ++..- ..
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~------~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~------~~~~p-~~   72 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSF------LEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDL------VSRYP-TH   72 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH------HHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-TS
T ss_pred             HHHHHHHhCCHHHHHHHHHHH------HHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHH------HHHCC-CC
Confidence            345566678888888887543      222  11233   68888999999999999999999887      54432 10


Q ss_pred             CCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         89 NDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        89 ~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ..            .+.....+|..+...|++++|+..|.++
T Consensus        73 ~~------------~~~~~~~la~~~~~~g~~~~A~~~~~~~  102 (129)
T 2xev_A           73 DK------------AAGGLLKLGLSQYGEGKNTEAQQTLQQV  102 (129)
T ss_dssp             TT------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cc------------cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            00            0344567888888899998888887654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.74  E-value=0.00081  Score=55.86  Aligned_cols=159  Identities=11%  Similarity=0.127  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHH-Hhhhhc--cC------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKI-GQLLPH--IK------SATTFIQYAKAKEAMGSYRESVGAYERAEDYD   78 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a-~~l~~~--~~------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~   78 (198)
                      +.++|.+++ +.|++++|+++|..+-....- ......  ..      ....+..+|..+...|++++|+++|.++-.+.
T Consensus         7 ~l~~a~~l~-~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~   85 (434)
T 4b4t_Q            7 KLEEARRLV-NEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM   85 (434)
T ss_dssp             HHHHHHHHH-HHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence            567777665 559999999999765211110 000000  00      12357789999999999999999999875331


Q ss_pred             ---------HHHH----HHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-------HHHHHHHHHHcCChHHHHH
Q psy12373         79 ---------NVVR----VDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGD-------FGAAIHFLILSKCYQDAFN  138 (198)
Q Consensus        79 ---------~av~----l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~-------~~~Av~~y~~ag~~~~A~~  138 (198)
                               ..|+    .+....|+++++..+.++.         -.+..+.++       ...-..+|...|+|.+|+.
T Consensus        86 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~---------~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  156 (434)
T 4b4t_Q           86 MQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKS---------IEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLA  156 (434)
T ss_dssp             HTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHH---------HHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---------HHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHH
Confidence                     1111    1212356666666554431         011111111       1123455555566666665


Q ss_pred             HHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        139 LSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       139 la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +..+.-..  ....  .......+.+...++.|...|+|.+|
T Consensus       157 ~l~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A  194 (434)
T 4b4t_Q          157 LINDLLRE--FKKL--DDKPSLVDVHLLESKVYHKLRNLAKS  194 (434)
T ss_dssp             HHHHHHHH--HTTS--SCSTHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHH--HHhc--ccchhHHHHHHHHHHHHHHhCcHHHH
Confidence            55433110  0110  11233467889999999999999999

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.73  E-value=0.00035  Score=62.92  Aligned_cols=125  Identities=13%  Similarity=-0.001  Sum_probs=86.6

Q ss_pred             cchHHHHHHHHHHcC----------------CHHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCH
Q psy12373          6 LTLDRGKWTLYESAG----------------NYEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSY   64 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g----------------~~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~   64 (198)
                      .+.+++|.+.|.++-                -+-....+|...|+++.|...+.+     .++...+..+|..+...|++
T Consensus       404 ~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  483 (681)
T 2pzi_A          404 LSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDY  483 (681)
T ss_dssp             TCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCH
T ss_pred             ccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCH
Confidence            366778877777653                122334567777888887766653     34778888999999999999


Q ss_pred             HHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHH----hcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         65 RESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVK----AKK-CTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        65 ~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~----~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                      ++|++.|.++-..        ...-.++. .+|++++ ....+    ..| +......+|..+...|++++|+..|.++-
T Consensus       484 ~~A~~~~~~al~l~P~~~~~~~~lg~~~~-~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al  561 (681)
T 2pzi_A          484 DSATKHFTEVLDTFPGELAPKLALAATAE-LAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVP  561 (681)
T ss_dssp             HHHHHHHHHHHHHSTTCSHHHHHHHHHHH-HHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHHhCCCChHHHHHHHHHHH-HcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            9999999987421        22333444 5677666 43332    223 34556678999999999999999999886


Q ss_pred             C
Q psy12373        132 C  132 (198)
Q Consensus       132 ~  132 (198)
                      .
T Consensus       562 ~  562 (681)
T 2pzi_A          562 P  562 (681)
T ss_dssp             T
T ss_pred             c
Confidence            4

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.72  E-value=0.00074  Score=50.43  Aligned_cols=93  Identities=10%  Similarity=0.101  Sum_probs=63.4

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---S-----------ATTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~-----------~~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      ..-+..|...|++++|+++|.++      .++.....   .           ..++..+|..+...|++++|+.+|.++ 
T Consensus        42 ~~~g~~~~~~~~~~~A~~~~~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a-  114 (198)
T 2fbn_A           42 KEEGNEFFKKNEINEAIVKYKEA------LDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV-  114 (198)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH------HHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH------HHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-
Confidence            34455666677788887777544      22221111   0           267788899999999999999998887 


Q ss_pred             CHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         76 DYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        76 ~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                           +++.-                ..+.....+|..+...|++++|+..|.++
T Consensus       115 -----l~~~p----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a  148 (198)
T 2fbn_A          115 -----LKIDK----------------NNVKALYKLGVANMYFGFLEEAKENLYKA  148 (198)
T ss_dssp             -----HHHST----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -----HHhCc----------------ccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                 54321                23445667888888889999888887654

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.70  E-value=0.0011  Score=46.29  Aligned_cols=94  Identities=11%  Similarity=0.117  Sum_probs=65.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLI  128 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~  128 (198)
                      ..+..+|..+...|+|++|+++|.++      |++.-                .++.....+|..+...|++++|++.|.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~A------l~~~p----------------~~~~~~~nlg~~~~~~~~~~~A~~~~~   66 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKA------IELDP----------------SNITFYNNKAAVYFEEKKFAECVQFCE   66 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CCHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence            35567899999999999999999987      54422                123345568888888999999988776


Q ss_pred             HcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        129 LSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       129 ~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +      |+++.......          .......+..++..+...|++++|
T Consensus        67 ~------al~~~~~~~~~----------~~~~a~~~~~lg~~~~~~~~~~~A  102 (127)
T 4gcn_A           67 K------AVEVGRETRAD----------YKLIAKAMSRAGNAFQKQNDLSLA  102 (127)
T ss_dssp             H------HHHHHHHTTCC----------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             H------HHHhCcccchh----------hHHHHHHHHHHHHHHHHcCCHHHH
Confidence            4      44444332210          001135677888888888888888

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.70  E-value=0.00038  Score=47.58  Aligned_cols=91  Identities=15%  Similarity=0.193  Sum_probs=60.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN   89 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~   89 (198)
                      -.-+..|...|++++|+++|.++-.      +  ...+..++..+|..+...|++++|+++|.++      +++.-    
T Consensus        20 ~~~~~~~~~~~~~~~A~~~~~~al~------~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a------~~~~~----   81 (133)
T 2lni_A           20 KNKGNECFQKGDYPQAMKHYTEAIK------R--NPKDAKLYSNRAACYTKLLEFQLALKDCEEC------IQLEP----   81 (133)
T ss_dssp             HHHHHHHHHTTCSHHHHHHHHHHHT------T--CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH------HHHCT----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHH------c--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHH------HHhCC----
Confidence            3445666677777777777754421      1  1235677778888888888888888888776      43321    


Q ss_pred             CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                  .++.....+|..+...|++++|+..|.++
T Consensus        82 ------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~  110 (133)
T 2lni_A           82 ------------TFIKGYTRKAAALEAMKDYTKAMDVYQKA  110 (133)
T ss_dssp             ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ------------CchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence                        12344556788888888888888777644

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.69  E-value=0.0012  Score=45.99  Aligned_cols=90  Identities=18%  Similarity=0.116  Sum_probs=57.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      ..-+..|...|+++.|+++|.++-.         ..++    ..++..+|..+...|++++|+++|.++      +++.-
T Consensus        32 ~~~a~~~~~~~~~~~A~~~~~~a~~---------~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~------~~~~~   96 (148)
T 2dba_A           32 RKEGNELFKCGDYGGALAAYTQALG---------LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKA------IEKDG   96 (148)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHT---------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHTS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHH---------HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHH------HhhCc
Confidence            3445566666777777776654421         1122    466677788888888888888777776      43321


Q ss_pred             hccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         86 DHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        86 ~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                      .++.....+|..+...|++++|+..|.++
T Consensus        97 ----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a  125 (148)
T 2dba_A           97 ----------------GDVKALYRRSQALEKLGRLDQAVLDLQRC  125 (148)
T ss_dssp             ----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----------------cCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                            12444556788888888888888777544

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=97.65  E-value=0.00096  Score=53.11  Aligned_cols=82  Identities=12%  Similarity=-0.039  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcC-CHHHHHHHH
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHG-DFGAAIHFL  127 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g-~~~~Av~~y  127 (198)
                      .++..+|..+...|++++|+++|.++      +.+.. ..+...         ........+|..+...| ++++|+++|
T Consensus       197 ~~~~nlg~~y~~~~~y~~A~~~~~~a------l~~~~-~~~~~~---------~~~~~~~~lg~~~~~~g~~~~~A~~~~  260 (293)
T 3u3w_A          197 KVRYNHAKALYLDSRYEESLYQVNKA------IEISC-RINSMA---------LIGQLYYQRGECLRKLEYEEAEIEDAY  260 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HTTBCT---------THHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH------HHHHH-HcCcHH---------HHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence            46778999999999999999999988      77776 333311         01233457899999999 579999987


Q ss_pred             HHcCChHHHHHHHHHcchhhHHhhh
Q psy12373        128 ILSKCYQDAFNLSQQHKKLHEFGKF  152 (198)
Q Consensus       128 ~~ag~~~~A~~la~~~~~~~~~~~~  152 (198)
                      .+      |+.+++..+.......+
T Consensus       261 ~~------Al~i~~~~~~~~~~~~l  279 (293)
T 3u3w_A          261 KK------ASFFFDILEMHAYKEAL  279 (293)
T ss_dssp             HH------HHHHHHHTTCTGGGGGG
T ss_pred             HH------HHHHHHHhCCHHHHHHH
Confidence            55      67788877765444443

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.64  E-value=0.0013  Score=46.82  Aligned_cols=106  Identities=13%  Similarity=-0.009  Sum_probs=69.2

Q ss_pred             CccccchHHHHHHHHHHc---CCHHH-HHHHHHHccCHHHHHhhhhc---cCChHHHHHHHHHHHH----cCCHHHHHHH
Q psy12373          2 GWGALTLDRGKWTLYESA---GNYEK-AATCYIQLKNWTKIGQLLPH---IKSATTFIQYAKAKEA----MGSYRESVGA   70 (198)
Q Consensus         2 ~~~~~~~~~~Aa~~y~~~---g~~~~-Ai~~y~~~~~~~~a~~l~~~---~~~~~l~~~~A~~~e~----~g~~~~A~~~   70 (198)
                      |+|--..+++|.++|+++   |+++- .-.+|...+.++++.+...+   ..++..+..+|..+..    .+++++|+++
T Consensus         4 G~g~~~d~~~A~~~~~~aa~~g~~~a~lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~   83 (138)
T 1klx_A            4 GGTVKKDLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY   83 (138)
T ss_dssp             CSSHHHHHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred             CcCCccCHHHHHHHHHHHHcCCCHhhhHHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence            666667788888888775   22211 22334444455555444432   3466777777777777    6777777777


Q ss_pred             HHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHcC
Q psy12373         71 YERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK----HGDFGAAIHFLILSK  131 (198)
Q Consensus        71 Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~ag  131 (198)
                      |.++      +     .             ..++.....++..|..    .+|+++|+++|.+|-
T Consensus        84 ~~~A------a-----~-------------~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa  124 (138)
T 1klx_A           84 YSKA------C-----G-------------LNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC  124 (138)
T ss_dssp             HHHH------H-----H-------------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred             HHHH------H-----c-------------CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence            7776      1     1             2345667788888887    889999999998763

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=97.63  E-value=0.0014  Score=48.85  Aligned_cols=119  Identities=16%  Similarity=0.051  Sum_probs=80.5

Q ss_pred             cchHHHHHHHHHHcCCH-----HHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373          6 LTLDRGKWTLYESAGNY-----EKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~-----~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      .|++++|.++|.++-++     -....+|...|+++.|...+.+     ..+...+..+|..+...|++++|+++|.++ 
T Consensus        19 ~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a-   97 (213)
T 1hh8_A           19 KKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA-   97 (213)
T ss_dssp             TTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred             hCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHH-
Confidence            47889999999877432     3345567788888887766653     236788889999999999999999999887 


Q ss_pred             CHHHHHHHHhhccCCHHHHHHHH-HhcC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         76 DYDNVVRVDLDHLNDIRHAVDIV-KAKK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        76 ~~~~av~l~~~~~~~~~~a~~l~-~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                           +++.- ...... ...+. ...+ .......+|..+...|++++|+..|.++-.
T Consensus        98 -----l~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           98 -----LIQLR-GNQLID-YKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             -----HHTTT-TCSEEE-CGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             -----HHhCC-CccHHH-HHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence                 55433 111000 00000 0001 124456789999999999999999887644

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.62  E-value=0.00099  Score=49.41  Aligned_cols=98  Identities=14%  Similarity=0.039  Sum_probs=67.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhcc------C----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHH
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHI------K----SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVV   81 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~------~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av   81 (198)
                      -+..+.+.|+++.|+++|.++      .++....      .    +..++...|..+...|+|++|+.+|.++      |
T Consensus        17 ~G~~l~~~g~~eeAi~~Y~kA------L~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA------L   84 (159)
T 2hr2_A           17 DAQRQLVAGEYDEAAANCRRA------MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA------L   84 (159)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHH------HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------H
T ss_pred             HHHHHHHCCCHHHHHHHHHHH------HhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHH------H
Confidence            344455679999999998766      3333321      1    2237888999999999999999999988      6


Q ss_pred             HHHhhccCCHHHHHHHHHhcCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         82 RVDLDHLNDIRHAVDIVKAKKC-TEGA----KRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        82 ~l~~~~~~~~~~a~~l~~~~~~-~~~~----~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                      +++- ..+..         .|+ ....    ...|..+...|++++|+..|.++-
T Consensus        85 ~l~n-~~~e~---------~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           85 HYFN-RRGEL---------NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHH-HHCCT---------TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             Hhhh-ccccC---------CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            6522 11111         122 2233    567888999999999999887653

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=97.62  E-value=0.00089  Score=46.02  Aligned_cols=88  Identities=17%  Similarity=-0.009  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ...+...|..+...|++++|+++|.++      +++.-                .++.....+|..+...|++++|+..|
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~a------l~~~p----------------~~~~~~~~~a~~~~~~~~~~~A~~~~   61 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEM------IKRAP----------------EDARGYSNRAAALAKLMSFPEAIADC   61 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCC----------------CChHHHHHHHHHHHHhcCHHHHHHHH
Confidence            355677899999999999999999887      54432                12344556788888888888887776


Q ss_pred             HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++=.                      + .+..+..+..+|..+...|++++|
T Consensus        62 ~~al~----------------------~-~p~~~~~~~~lg~~~~~~~~~~~A   91 (126)
T 3upv_A           62 NKAIE----------------------K-DPNFVRAYIRKATAQIAVKEYASA   91 (126)
T ss_dssp             HHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHH----------------------h-CCCcHHHHHHHHHHHHHHhCHHHH
Confidence            54311                      1 234688899999999999999888

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=97.61  E-value=0.0011  Score=51.55  Aligned_cols=118  Identities=9%  Similarity=0.000  Sum_probs=74.9

Q ss_pred             cchHHHHHHHHHHcC-----C------HHHHHHHHHHccCHHHHHhhhhcc--------CChHHHHHHHHHHHH------
Q psy12373          6 LTLDRGKWTLYESAG-----N------YEKAATCYIQLKNWTKIGQLLPHI--------KSATTFIQYAKAKEA------   60 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g-----~------~~~Ai~~y~~~~~~~~a~~l~~~~--------~~~~l~~~~A~~~e~------   60 (198)
                      .|+|++|..+|.+.=     +      +-....+|...|+|+.|...+.++        ..+..+..+|..+..      
T Consensus        28 ~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~  107 (261)
T 3qky_A           28 QGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYE  107 (261)
T ss_dssp             TTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTT
T ss_pred             hCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhccccc
Confidence            378999999998762     2      134556788899999987766531        135678889999999      


Q ss_pred             --cCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC--CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         61 --MGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK--CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        61 --~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~--~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                        .|++++|+..|.++      ++..- .......+........  .......+|..+...|++++|+..|.++
T Consensus       108 ~~~~~~~~A~~~~~~~------l~~~p-~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~  174 (261)
T 3qky_A          108 LDQTDTRKAIEAFQLF------IDRYP-NHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAV  174 (261)
T ss_dssp             SCCHHHHHHHHHHHHH------HHHCT-TCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHH------HHHCc-CchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence              99999999999987      44443 2222222221111110  1112345566666777777777766654

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.61  E-value=0.00032  Score=46.36  Aligned_cols=92  Identities=20%  Similarity=0.108  Sum_probs=64.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      .-+..|...|++++|+.+|.++      ..+  ...+...+..+|..+...|++++|+++|.++      +++.-   + 
T Consensus        11 ~~~~~~~~~~~~~~A~~~~~~a------~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~~~---~-   72 (112)
T 2kck_A           11 LEGVLQYDAGNYTESIDLFEKA------IQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYV------INVIE---D-   72 (112)
T ss_dssp             GHHHHHHSSCCHHHHHHHHHHH------HHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHTSC---C-
T ss_pred             HHHHHHHHhhhHHHHHHHHHHH------HHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHH------HHhCc---c-
Confidence            3456677778888888887544      222  2235677888999999999999999998887      43322   1 


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhc-CCHHHHHHHHHHc
Q psy12373         91 IRHAVDIVKAKKCTEGAKRIADYCNKH-GDFGAAIHFLILS  130 (198)
Q Consensus        91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~-g~~~~Av~~y~~a  130 (198)
                                ...+.....+|..+... |++++|++++.++
T Consensus        73 ----------~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~  103 (112)
T 2kck_A           73 ----------EYNKDVWAAKADALRYIEGKEVEAEIAEARA  103 (112)
T ss_dssp             ----------TTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred             ----------cchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence                      01344556778888888 8888888887765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=97.60  E-value=0.0011  Score=57.79  Aligned_cols=123  Identities=6%  Similarity=-0.083  Sum_probs=79.1

Q ss_pred             chHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      +++++|.++|.++=.        +.....+|...|++++|...+.+     .++...+..+|..+...|++++|+++|.+
T Consensus         3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~   82 (568)
T 2vsy_A            3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQ   82 (568)
T ss_dssp             ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            355666666655421        22334456666777776655542     23678899999999999999999999998


Q ss_pred             hcC--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHc
Q psy12373         74 AED--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKH---GDFGAAIHFLILS  130 (198)
Q Consensus        74 a~~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~---g~~~~Av~~y~~a  130 (198)
                      +-.        +...-.++. ..|++++|....++    .| ++.....++..+...   |++++|++.|.++
T Consensus        83 al~~~p~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a  154 (568)
T 2vsy_A           83 ASDAAPEHPGIALWLGHALE-DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA  154 (568)
T ss_dssp             HHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence            742        234445666 78999999877653    23 355566789999999   9999999988875

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=97.60  E-value=0.00054  Score=49.38  Aligned_cols=89  Identities=11%  Similarity=0.082  Sum_probs=65.5

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+..+|..+...|++++|+.+|.++      +.+.-                .++.....+|..+...|++++|+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~lg~~~~~~g~~~~A~~~   77 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQAL------CVLDH----------------YDSRFFLGLGACRQAMGQYDLAIHS   77 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHH------HHcCc----------------ccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4567778899999999999999999876      43322                1344455678888888888888877


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++-.                      +. +.++..+..+|..|...|++++|
T Consensus        78 ~~~al~----------------------l~-p~~~~~~~~lg~~~~~~g~~~~A  108 (148)
T 2vgx_A           78 YSYGAV----------------------MD-IXEPRFPFHAAECLLQXGELAEA  108 (148)
T ss_dssp             HHHHHH----------------------HS-TTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHh----------------------cC-CCCchHHHHHHHHHHHcCCHHHH
Confidence            765311                      22 34677888899999999999888

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=97.60  E-value=0.0071  Score=49.19  Aligned_cols=55  Identities=13%  Similarity=0.025  Sum_probs=36.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCCh----HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSA----TTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~----~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +.++...|+++.|+..+.++      ..... .+++    ..+..+|..+...|++++|.++|.++
T Consensus        21 a~~~~~~g~~~~A~~~~~~a------l~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   79 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLA------LEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT   79 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------HHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHH------HHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            34555667777777766543      22221 1122    24567788899999999999999887

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.58  E-value=0.0011  Score=56.77  Aligned_cols=94  Identities=19%  Similarity=0.170  Sum_probs=65.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-------------SATTFIQYAKAKEAMGSYRESVGAYERAEDY   77 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-------------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~   77 (198)
                      .-+..|.+.|+++.|+..|.++      .++.....             ...++..+|..+...|+|++|+.+|.++   
T Consensus       273 ~~G~~~~~~g~~~~A~~~y~~A------l~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a---  343 (457)
T 1kt0_A          273 EKGTVYFKGGKYMQAVIQYGKI------VSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA---  343 (457)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---
T ss_pred             HHHHHHHhCCCHHHHHHHHHHH------HHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---
Confidence            3455666778888888888655      22222211             1467788899999999999999999887   


Q ss_pred             HHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         78 DNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        78 ~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                         +++.-                .++.....+|..+...|++++|+..|.++-.
T Consensus       344 ---l~~~p----------------~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~  379 (457)
T 1kt0_A          344 ---LGLDS----------------ANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  379 (457)
T ss_dssp             ---HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             ---HhcCC----------------ccHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence               44322                1344456778888888888888888877644

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.57  E-value=0.00012  Score=62.76  Aligned_cols=98  Identities=13%  Similarity=0.052  Sum_probs=64.6

Q ss_pred             HcCCHHHHHHHHHHccCHHHHHhhhh--ccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHH
Q psy12373         18 SAGNYEKAATCYIQLKNWTKIGQLLP--HIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAV   95 (198)
Q Consensus        18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~--~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~   95 (198)
                      +.|++++|+.+|.++-....  +++.  +.....++..+|..+...|+|++|+.+|.++      +.++...+|.     
T Consensus       299 ~~g~~~~a~~~~~~~L~~~~--~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~------L~i~~~~lg~-----  365 (429)
T 3qwp_A          299 AHWKWEQVLAMCQAIISSNS--ERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRT------MEPYRIFFPG-----  365 (429)
T ss_dssp             HTTCHHHHHHHHHHHHTCSS--CCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHHSCS-----
T ss_pred             hhccHHHHHHHHHHHHHhcc--CcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHH------HHhHHHHcCC-----
Confidence            44666777666654311110  0000  1113456778899999999999999999998      8777755554     


Q ss_pred             HHHHhcCCHHHHH-HHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         96 DIVKAKKCTEGAK-RIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        96 ~l~~~~~~~~~~~-~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                          .||+..... .+|..+...|++++|+.+|.+|-.
T Consensus       366 ----~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          366 ----SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             ----SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ----CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence                234333333 689999999999999988876543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.57  E-value=0.00066  Score=48.09  Aligned_cols=89  Identities=8%  Similarity=-0.024  Sum_probs=64.9

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+..+|..+...|++++|+++|.++      +.+.-                .++.....+|..+...|++++|+..
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~lg~~~~~~g~~~~A~~~   74 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQAL------CMLDH----------------YDARYFLGLGACRQSLGLYEQALQS   74 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHH------HHhCC----------------ccHHHHHHHHHHHHHHhhHHHHHHH
Confidence            4566778899999999999999999876      43221                1334455678888888888888877


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++=.                      + .+.+|..+..+|..|...|++++|
T Consensus        75 ~~~al~----------------------~-~p~~~~~~~~lg~~~~~~g~~~~A  105 (142)
T 2xcb_A           75 YSYGAL----------------------M-DINEPRFPFHAAECHLQLGDLDGA  105 (142)
T ss_dssp             HHHHHH----------------------H-CTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHh----------------------c-CCCCcHHHHHHHHHHHHcCCHHHH
Confidence            765311                      2 234677888899999999999888

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=97.56  E-value=0.0017  Score=47.64  Aligned_cols=108  Identities=13%  Similarity=0.040  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                      .....|..+...|++++|+..|.++      +.+.-                .++.....+|..+...|++++|+..|.+
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~P----------------~~~~a~~~la~~~~~~g~~~~A~~~~~~   65 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTL------SDELQ----------------SRGDVKLAKADCLLETKQFELAQELLAT   65 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTS------CHHHH----------------TSHHHHHHHHHHHHHTTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH------HHHCC----------------CcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4556777778888888888888776      22111                1334455667777777777777777776


Q ss_pred             cCChH---HH------HHHHHHcch---hhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        130 SKCYQ---DA------FNLSQQHKK---LHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       130 ag~~~---~A------~~la~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +-...   ..      +.+....+.   ...+..++.+ .+.++..+..+|..+...|++++|
T Consensus        66 a~~~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A  127 (176)
T 2r5s_A           66 IPLEYQDNSYKSLIAKLELHQQAAESPELKRLEQELAA-NPDNFELACELAVQYNQVGRDEEA  127 (176)
T ss_dssp             CCGGGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcccHHHH
Confidence            64321   11      111111111   2233333222 345789999999999999999998

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=97.55  E-value=0.0013  Score=45.39  Aligned_cols=89  Identities=13%  Similarity=-0.095  Sum_probs=66.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+..+|..+...|++++|+.+|.++      +++.-                .++.....+|..+...|++++|+..
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~a------l~~~~----------------~~~~~~~~l~~~~~~~~~~~~A~~~   65 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRA------ITRNP----------------LVAVYYTNRALCYLKMQQPEQALAD   65 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHH------HhhCc----------------CcHHHHHHHHHHHHHhcCHHHHHHH
Confidence            6778889999999999999999999887      54432                1234455678888888888887766


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++-.                      +. +..+..+..+|..+...|++.+|
T Consensus        66 ~~~al~----------------------~~-p~~~~~~~~l~~~~~~~~~~~~A   96 (137)
T 3q49_B           66 CRRALE----------------------LD-GQSVKAHFFLGQCQLEMESYDEA   96 (137)
T ss_dssp             HHHHHH----------------------HC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHH----------------------hC-chhHHHHHHHHHHHHHHhhHHHH
Confidence            544321                      12 34678888999999999999888

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=97.54  E-value=0.0012  Score=46.91  Aligned_cols=27  Identities=19%  Similarity=0.217  Sum_probs=23.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ...+..+|..+...|++++|+++|.++
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~a   39 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQA   39 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            456778899999999999999999887

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=97.54  E-value=0.0011  Score=47.85  Aligned_cols=89  Identities=13%  Similarity=0.066  Sum_probs=65.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+..+|..+...|+|++|+++|.++      +++.-                .++.....+|..+...|++++|+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~l~~~~~~~g~~~~A~~~   67 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQA------LSIAP----------------ANPIYLSNRAAAYSASGQHEKAAED   67 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------cCHHHHHHHHHHHHHccCHHHHHHH
Confidence            4567788899999999999999999887      54432                1234455678778888888887777


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++=.                      + .+..+..+..+|..|...|++++|
T Consensus        68 ~~~al~----------------------~-~p~~~~~~~~lg~~~~~~g~~~~A   98 (164)
T 3sz7_A           68 AELATV----------------------V-DPKYSKAWSRLGLARFDMADYKGA   98 (164)
T ss_dssp             HHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHH----------------------h-CCCCHHHHHHHHHHHHHccCHHHH
Confidence            654311                      1 234578888889988888888888

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=97.53  E-value=0.0028  Score=48.36  Aligned_cols=52  Identities=13%  Similarity=0.195  Sum_probs=38.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC-----------HHHHHHHHhhccCCHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAED-----------YDNVVRVDLDHLNDIRHAVDIVK   99 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~-----------~~~av~l~~~~~~~~~~a~~l~~   99 (198)
                      ++..+...|..+...|++++|+..|.++-.           +.....++. ..|+|++|+....
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~-~~~~~~~A~~~~~   65 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY-KNADLPLAQAAID   65 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHH-hcCCHHHHHHHHH
Confidence            356677889999999999999999998642           122344555 6789999876654

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.0017  Score=53.86  Aligned_cols=141  Identities=10%  Similarity=0.081  Sum_probs=82.8

Q ss_pred             HHHHHHHHHccCHHHHHhhhhc-------cC----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------------
Q psy12373         23 EKAATCYIQLKNWTKIGQLLPH-------IK----SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------------   77 (198)
Q Consensus        23 ~~Ai~~y~~~~~~~~a~~l~~~-------~~----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------------   77 (198)
                      .....+|...|+|+.+...+..       ++    .+.+...++......|+++.|+++|.++-.+              
T Consensus        59 ~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~  138 (434)
T 4b4t_Q           59 LELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLS  138 (434)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHH
Confidence            3445667777777776555532       22    1234456677888889999999999887543              


Q ss_pred             HHHHHHHhhccCCHHHHHHHHHhc-------C-CH---HHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchh
Q psy12373         78 DNVVRVDLDHLNDIRHAVDIVKAK-------K-CT---EGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKL  146 (198)
Q Consensus        78 ~~av~l~~~~~~~~~~a~~l~~~~-------~-~~---~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~  146 (198)
                      .....++. ..|++++|..+..+.       . .+   +.....++.+...|++++|..+|.++-.      +....+..
T Consensus       139 ~~la~~~~-~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~------~~~~~~~~  211 (434)
T 4b4t_Q          139 IKLATLHY-QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAART------AANSIYCP  211 (434)
T ss_dssp             HHHHHHHH-HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HHHHSCCC
T ss_pred             HHHHHHHH-HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH------HhhcCCCc
Confidence            24456666 668888887765431       1 11   1223456777777777777777655432      22111110


Q ss_pred             hHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        147 HEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       147 ~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .          ......+...+..+...|+|.+|
T Consensus       212 ~----------~~~~~~~~~~g~~~~~~~~y~~A  235 (434)
T 4b4t_Q          212 T----------QTVAELDLMSGILHCEDKDYKTA  235 (434)
T ss_dssp             H----------HHHHHHHHHHHHHTTSSSCHHHH
T ss_pred             h----------HHHHHHHHHHHHHHHHHHhHHHH
Confidence            0          00123455566677777777777

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.49  E-value=0.00034  Score=60.93  Aligned_cols=110  Identities=10%  Similarity=-0.016  Sum_probs=78.9

Q ss_pred             cchHHHHHHHHHHc----------CC------HHHHHHHHHHccCHHHHHhhhhc-------------cCChHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESA----------GN------YEKAATCYIQLKNWTKIGQLLPH-------------IKSATTFIQYAK   56 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~----------g~------~~~Ai~~y~~~~~~~~a~~l~~~-------------~~~~~l~~~~A~   56 (198)
                      .|+|++|..+|+++          .+      +......|...|+|++|..+..+             .+....+..+|.
T Consensus       322 qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~  401 (490)
T 3n71_A          322 EGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGL  401 (490)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence            46788888888765          12      33445667777777777665542             113456678999


Q ss_pred             HHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHH-HHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         57 AKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-KRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        57 ~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~-~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .+...|++++|+.+|.+|      +.+....+|.         .||..... .++++.+...+.+++|..+|.++
T Consensus       402 ~~~~~G~~~eA~~~~~~A------l~i~~~~lG~---------~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~  461 (490)
T 3n71_A          402 TNWHAGHIEVGHGMICKA------YAILLVTHGP---------SHPITKDLEAMRMQTEMELRMFRQNEFMYHKM  461 (490)
T ss_dssp             HHHHTTCHHHHHHHHHHH------HHHHHHHTCT---------TSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHH------HHHHHHHhCC---------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998      7777755665         23433332 36777888889999999999887

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.49  E-value=0.00076  Score=49.20  Aligned_cols=49  Identities=16%  Similarity=0.093  Sum_probs=32.4

Q ss_pred             HcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         18 SAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        18 ~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ..|++++|++.|.++      ..+  ...++..+..+|..+...|++++|+++|.++
T Consensus        22 ~~~~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   70 (177)
T 2e2e_A           22 SQQNPEAQLQALQDK------IRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQA   70 (177)
T ss_dssp             -----CCCCHHHHHH------HHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHH------HHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            345556665555432      111  2346788889999999999999999999887

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=97.48  E-value=0.0026  Score=48.36  Aligned_cols=86  Identities=17%  Similarity=0.158  Sum_probs=64.5

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHhc---CHHHH---HHHHhhccC----CHHHHHHHHH---hcCCHHHHHHHHH
Q psy12373         46 KSATTFIQYAKAKEAMGSYRESVGAYERAE---DYDNV---VRVDLDHLN----DIRHAVDIVK---AKKCTEGAKRIAD  112 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~---~~~~a---v~l~~~~~~----~~~~a~~l~~---~~~~~~~~~~~A~  112 (198)
                      .++..+..+|..+...+++++|+++|.++-   +....   -.++. . +    ++++|+..-+   ...++.....+|.
T Consensus        16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~-~-~g~~~~~~~A~~~~~~A~~~g~~~a~~~Lg~   93 (212)
T 3rjv_A           16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKI-R-NPQQADYPQARQLAEKAVEAGSKSGEIVLAR   93 (212)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTT-S-STTSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-c-CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            678899999999999999999999999984   33222   22333 3 5    7888877654   3456777778888


Q ss_pred             HHHh----cCCHHHHHHHHHHcCCh
Q psy12373        113 YCNK----HGDFGAAIHFLILSKCY  133 (198)
Q Consensus       113 ~~~~----~g~~~~Av~~y~~ag~~  133 (198)
                      .+..    .+++++|+++|.++-..
T Consensus        94 ~y~~g~g~~~d~~~A~~~~~~A~~~  118 (212)
T 3rjv_A           94 VLVNRQAGATDVAHAITLLQDAARD  118 (212)
T ss_dssp             HHTCGGGSSCCHHHHHHHHHHHTSS
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHc
Confidence            8876    78888888888887653

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=97.48  E-value=0.00099  Score=53.03  Aligned_cols=97  Identities=14%  Similarity=0.011  Sum_probs=64.8

Q ss_pred             HHHHHccCHHHHHhhhh-------ccCC-h----HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHH
Q psy12373         27 TCYIQLKNWTKIGQLLP-------HIKS-A----TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHA   94 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~-------~~~~-~----~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a   94 (198)
                      .+|...|++++|.....       ..++ +    .++..+|..+...|++++|+++|.++      +.+.. ..+...  
T Consensus       163 ~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka------l~~~~-~~~~~~--  233 (293)
T 2qfc_A          163 NIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA------IEISC-RINSMA--  233 (293)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HTTBCS--
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH------HHHHH-hcCcHH--
Confidence            45556666666544443       2222 1    57788999999999999999999998      66664 322211  


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCHHHH-HHHHHHcCChHHHHHHHHHcch
Q psy12373         95 VDIVKAKKCTEGAKRIADYCNKHGDFGAA-IHFLILSKCYQDAFNLSQQHKK  145 (198)
Q Consensus        95 ~~l~~~~~~~~~~~~~A~~~~~~g~~~~A-v~~y~~ag~~~~A~~la~~~~~  145 (198)
                             ........+|..+...|++++| ..+|.      +|+.+++..+.
T Consensus       234 -------~~~~~~~~lg~~y~~~g~~~~Ai~~~~~------~Al~~~~~~~~  272 (293)
T 2qfc_A          234 -------LIGQLYYQRGECLRKLEYEEAEIEDAYK------KASFFFDILEM  272 (293)
T ss_dssp             -------SHHHHHHHHHHHHHHTTCCHHHHHHHHH------HHHHHHHHTTC
T ss_pred             -------HHHHHHHHHHHHHHHcCCcHHHHHHHHH------HHHHHHHHhCc
Confidence                   0122345789999999999999 55554      56667766654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.47  E-value=0.0015  Score=52.05  Aligned_cols=93  Identities=15%  Similarity=0.102  Sum_probs=65.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN   89 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~   89 (198)
                      ..-+..|.+.|+++.|+..|.++      ..+  ...+..++..+|..+...|++++|++.|.++      +++.-    
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~a------l~~~p----   69 (281)
T 2c2l_A            8 KEQGNRLFVGRKYPEAAACYGRA------ITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRA------LELDG----   69 (281)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH------HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------TTSCT----
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHH------HHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCC----
Confidence            34456667778888888887544      222  3346788889999999999999999988887      22110    


Q ss_pred             CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                                  .++.....+|..+...|++++|+..|.++-.
T Consensus        70 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           70 ------------QSVKAHFFLGQCQLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             ------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             ------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                        1234455678888888888888888876543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=97.46  E-value=0.0017  Score=58.49  Aligned_cols=56  Identities=7%  Similarity=-0.025  Sum_probs=39.3

Q ss_pred             HHcCCHHHHHHHHHHcc--CHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         17 ESAGNYEKAATCYIQLK--NWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        17 ~~~g~~~~Ai~~y~~~~--~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ...|++++|++.|.++-  .|+....+  ..++...+..+|..+...|++++|++.|.++
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~a  459 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVD--FSESVELPLMEVRALLDLGDVAKATRKLDDL  459 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------C--CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccc--cccchhHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            45688888888887552  22211111  2336788999999999999999999999987

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=97.42  E-value=0.016  Score=49.27  Aligned_cols=132  Identities=14%  Similarity=0.069  Sum_probs=81.0

Q ss_pred             ChHHHHHHHHHHHHc----CCHHHHHHHHHHhc--CHHHHH---HH-H--hhccCCHHHHHHHHH---hcCCHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAM----GSYRESVGAYERAE--DYDNVV---RV-D--LDHLNDIRHAVDIVK---AKKCTEGAKRIA  111 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~----g~~~~A~~~Y~ka~--~~~~av---~l-~--~~~~~~~~~a~~l~~---~~~~~~~~~~~A  111 (198)
                      +...+..+|..+...    +++++|+++|.++-  +.....   .+ +  . ..+++++|+...+   +.+++.....+|
T Consensus       212 ~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~-~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg  290 (452)
T 3e4b_A          212 TAQRVDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFP-ELGDVEQMMKYLDNGRAADQPRAELLLG  290 (452)
T ss_dssp             CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSG-GGCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            444447888888766    79999999999885  222222   22 2  3 4688888877665   345677788888


Q ss_pred             HHHHhcC-----CHHHHHHHHHHcC--ChHHHHHHHHH--cc-----hhhHHhhhhh-hcCCCCHHHHHHHHHHHHh---
Q psy12373        112 DYCNKHG-----DFGAAIHFLILSK--CYQDAFNLSQQ--HK-----KLHEFGKFLL-EEDEPNPVELKRLAIHFEE---  173 (198)
Q Consensus       112 ~~~~~~g-----~~~~Av~~y~~ag--~~~~A~~la~~--~~-----~~~~~~~~~~-l~~~~~~~~~~~~A~~~e~---  173 (198)
                      ..|. .|     ++++|+.+|.++-  ...--+.|+.-  .|     .++....... ......+.....++..|..   
T Consensus       291 ~~y~-~G~g~~~d~~~A~~~~~~Aa~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g  369 (452)
T 3e4b_A          291 KLYY-EGKWVPADAKAAEAHFEKAVGREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKG  369 (452)
T ss_dssp             HHHH-HCSSSCCCHHHHHHHHHTTTTTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTT
T ss_pred             HHHH-cCCCCCCCHHHHHHHHHHHhCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCC
Confidence            8887 55     8999999999885  22222333321  11     1111111111 1244567778888887764   


Q ss_pred             -CCChhhH
Q psy12373        174 -DKGVLTS  180 (198)
Q Consensus       174 -~g~~~~A  180 (198)
                       ..++.+|
T Consensus       370 ~~~d~~~A  377 (452)
T 3e4b_A          370 TKPDPLNA  377 (452)
T ss_dssp             BCCCHHHH
T ss_pred             CCCCHHHH
Confidence             3466666

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=97.41  E-value=0.002  Score=42.66  Aligned_cols=88  Identities=13%  Similarity=0.048  Sum_probs=59.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ...+..+|..+...|++++|+++|.++      +++.-                .++.....+|..+...|++++|+..|
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~------~~~~~----------------~~~~~~~~~a~~~~~~~~~~~A~~~~   61 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEA------IKLDP----------------HNHVLYSNRSAAYAKKGDYQKAYEDG   61 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHH------HHHCC----------------CcHHHHHHHHHHHHhhccHHHHHHHH
Confidence            456677888888999999999988887      33221                12344456677777777777776655


Q ss_pred             HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++-.                      + .+..+..+..+|..+...|++++|
T Consensus        62 ~~~~~----------------------~-~~~~~~~~~~~a~~~~~~~~~~~A   91 (118)
T 1elw_A           62 CKTVD----------------------L-KPDWGKGYSRKAAALEFLNRFEEA   91 (118)
T ss_dssp             HHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHH----------------------h-CcccHHHHHHHHHHHHHHhhHHHH
Confidence            43211                      1 233577888888888888888887

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.41  E-value=0.0003  Score=48.17  Aligned_cols=84  Identities=13%  Similarity=0.107  Sum_probs=55.0

Q ss_pred             cCCHHHHHHHHHHccCHHHHHhhh-hccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHH
Q psy12373         19 AGNYEKAATCYIQLKNWTKIGQLL-PHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI   97 (198)
Q Consensus        19 ~g~~~~Ai~~y~~~~~~~~a~~l~-~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l   97 (198)
                      .|++++|+.+|.++-.      +- ...++...+..+|..+...|++++|+++|.++      +++.-            
T Consensus         3 ~g~~~~A~~~~~~al~------~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a------l~~~p------------   58 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIA------SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANG------VKQFP------------   58 (117)
T ss_dssp             ----CCCHHHHHHHHS------SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT------------
T ss_pred             CCcHHHHHHHHHHHHH------cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC------------
Confidence            3566666666654422      10 00124567888999999999999999999887      54432            


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         98 VKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        98 ~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                          .++.....+|..+...|++++|+..|.++
T Consensus        59 ----~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   87 (117)
T 3k9i_A           59 ----NHQALRVFYAMVLYNLGRYEQGVELLLKI   87 (117)
T ss_dssp             ----TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             ----CchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                12444557888888888888888877665

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.36  E-value=0.0015  Score=52.87  Aligned_cols=111  Identities=15%  Similarity=0.069  Sum_probs=78.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhc--C------HHHHHHHHhhccCCHHHHHHHHHhcC---CH----HHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAE--D------YDNVVRVDLDHLNDIRHAVDIVKAKK---CT----EGAKRIAD  112 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~--~------~~~av~l~~~~~~~~~~a~~l~~~~~---~~----~~~~~~A~  112 (198)
                      ..+...+|..+-..|+|++|.+.|...-  .      |..++ ++. ..++|++|....+...   ++    +....++.
T Consensus       102 ~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~~~~~~a~-l~~-~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~  179 (282)
T 4f3v_A          102 LAITMGFAACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAV-VYG-AAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGV  179 (282)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHHHHHHHHH-HHH-HTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchHHHHHHHH-HHH-HcCCHHHHHHHHHHhhccCCcccHHHHHHHHHH
Confidence            4677789999999999999999998763  2      23333 555 6799999999886432   22    24567899


Q ss_pred             HHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        113 YCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       113 ~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++..|++++|+..|.++..-.                    ..+...++..+..+..+...|+.++|
T Consensus       180 al~~LG~~~eAl~~l~~a~~g~--------------------~~P~~~~da~~~~glaL~~lGr~deA  227 (282)
T 4f3v_A          180 AAANLALFTEAERRLTEANDSP--------------------AGEACARAIAWYLAMARRSQGNESAA  227 (282)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTST--------------------TTTTTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHhcCC--------------------CCccccHHHHHHHHHHHHHcCCHHHH
Confidence            9999999999999998763200                    00122445666677777777777666

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=97.36  E-value=0.0012  Score=53.46  Aligned_cols=111  Identities=14%  Similarity=0.034  Sum_probs=67.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH-----HHHHHHh-
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYD-----NVVRVDL-   85 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~-----~av~l~~-   85 (198)
                      .+.++...|+++.|.++|...-.         .-++....+.+|..+...|+|++|+.+|.++..+.     ..+.+++ 
T Consensus       108 yA~~L~~~g~y~eA~~~l~~~~~---------~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG  178 (282)
T 4f3v_A          108 FAACEAAQGNYADAMEALEAAPV---------AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHG  178 (282)
T ss_dssp             HHHHHHHHTCHHHHHHHHTSSCC---------TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHh---------cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHH
Confidence            34555555666666655543321         11111245556677777777777777777776431     2233222 


Q ss_pred             ---hccCCHHHHHHHHHhc---C-----CHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         86 ---DHLNDIRHAVDIVKAK---K-----CTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        86 ---~~~~~~~~a~~l~~~~---~-----~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                         +.+|++++|.....+.   +     .++.....|..+.+.|+.++|+..|.++-
T Consensus       179 ~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~  235 (282)
T 4f3v_A          179 VAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ  235 (282)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence               3677777776655432   2     12345678888999999999999998763

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=97.35  E-value=0.0027  Score=48.00  Aligned_cols=68  Identities=13%  Similarity=0.211  Sum_probs=53.3

Q ss_pred             chHHHHHHHHHHcC--CHHH----------------------HHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAG--NYEK----------------------AATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKA   57 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g--~~~~----------------------Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~   57 (198)
                      |++++|..+|.++=  +++.                      ...+|...|++++|...+.+     .++...+..+|..
T Consensus        18 g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   97 (208)
T 3urz_A           18 GQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEM   97 (208)
T ss_dssp             TCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence            67888888887752  3322                      45667788888888766653     3478899999999


Q ss_pred             HHHcCCHHHHHHHHHHh
Q psy12373         58 KEAMGSYRESVGAYERA   74 (198)
Q Consensus        58 ~e~~g~~~~A~~~Y~ka   74 (198)
                      +...|++++|+++|.++
T Consensus        98 ~~~~g~~~~A~~~~~~a  114 (208)
T 3urz_A           98 QVCRGQEKDALRMYEKI  114 (208)
T ss_dssp             HHHHTCHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHH
Confidence            99999999999999998

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=97.33  E-value=0.0029  Score=45.99  Aligned_cols=83  Identities=10%  Similarity=0.091  Sum_probs=56.8

Q ss_pred             HHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHH-HHHcCCH--HHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHH
Q psy12373         26 ATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKA-KEAMGSY--RESVGAYERAEDYDNVVRVDLDHLNDIRHAVDI   97 (198)
Q Consensus        26 i~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~-~e~~g~~--~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l   97 (198)
                      ..+|...|+++.|...+.+     ..++.++..+|.. +...|++  ++|+.+|.++      +++.-            
T Consensus        51 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~a------l~~~p------------  112 (177)
T 2e2e_A           51 GEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKA------LALDS------------  112 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH------HHHCT------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHH------HHhCC------------
Confidence            3445555555555444432     2367888889998 7788998  9999888876      44322            


Q ss_pred             HHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         98 VKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        98 ~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                          .++.....+|..+...|++++|+..|.++
T Consensus       113 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~a  141 (177)
T 2e2e_A          113 ----NEITALMLLASDAFMQANYAQAIELWQKV  141 (177)
T ss_dssp             ----TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ----CcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence                12344557888888899999988887764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.32  E-value=0.0022  Score=53.49  Aligned_cols=108  Identities=14%  Similarity=0.070  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH------------------------HHHHHHHhhccCCHHHHHHHHHh----
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY------------------------DNVVRVDLDHLNDIRHAVDIVKA----  100 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~------------------------~~av~l~~~~~~~~~~a~~l~~~----  100 (198)
                      ..+..+|..+...|++++|+++|.++-.+                        ...-.++. .+|++++|...+++    
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKL-KMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHHh
Confidence            44667788888888888888888877431                        11222333 45666666555442    


Q ss_pred             cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhh
Q psy12373        101 KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLT  179 (198)
Q Consensus       101 ~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~  179 (198)
                      .| ++.....+|..+...|++++|+..|.++-.                      +. +.++.....++..+...+++.+
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~----------------------l~-P~~~~~~~~l~~~~~~~~~~~~  359 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQE----------------------IA-PEDKAIQAELLKVKQKIKAQKD  359 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH----------------------HC-TTCHHHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHH----------------------hC-CCCHHHHHHHHHHHHHHHHHHH
Confidence            11 234444566666666666666655544321                      12 2356666667777666666655


Q ss_pred             H
Q psy12373        180 S  180 (198)
Q Consensus       180 A  180 (198)
                      +
T Consensus       360 a  360 (370)
T 1ihg_A          360 K  360 (370)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.29  E-value=0.004  Score=41.37  Aligned_cols=74  Identities=9%  Similarity=0.090  Sum_probs=56.5

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373         46 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH  125 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~  125 (198)
                      .++.++..+|..+...|++++|+++|.++      +++.-                ..+.....+|..+...|++++|++
T Consensus         5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~a~~~lg~~~~~~g~~~~A~~   62 (100)
T 3ma5_A            5 EDPFTRYALAQEHLKHDNASRALALFEEL------VETDP----------------DYVGTYYHLGKLYERLDRTDDAID   62 (100)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHST----------------TCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cCHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CcHHHHHHHHHHHHHcCCHHHHHH
Confidence            46778889999999999999999999887      54432                123345678999999999999999


Q ss_pred             HHHHcCChHHHHHHHHHcchhh
Q psy12373        126 FLILSKCYQDAFNLSQQHKKLH  147 (198)
Q Consensus       126 ~y~~ag~~~~A~~la~~~~~~~  147 (198)
                      .|.+      |+++....+...
T Consensus        63 ~~~~------al~l~~~~~~~~   78 (100)
T 3ma5_A           63 TYAQ------GIEVAREEGTQK   78 (100)
T ss_dssp             HHHH------HHHHHHHHSCHH
T ss_pred             HHHH------HHhhhhcCCchh
Confidence            8876      566665555443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.28  E-value=0.002  Score=42.61  Aligned_cols=89  Identities=17%  Similarity=0.109  Sum_probs=60.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ...+..+|..+...|++++|+++|.++      +++.-                .++.....+|..+...|++++|+..|
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~a------l~~~p----------------~~~~~~~~lg~~~~~~g~~~~A~~~~   61 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQL------ITAQP----------------QNPVGYSNKAMALIKLGEYTQAIQMC   61 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------HhcCC----------------CCHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            456778899999999999999999887      54422                12344556788888888888887777


Q ss_pred             HHcCChHHHHHHHHHcchhhHHhhhhhhcCCC-----CHHHHHHHHHHHHhCCChhhH
Q psy12373        128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEP-----NPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~-----~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++-.                      +.++.     .+..+..++..+...|++..|
T Consensus        62 ~~al~----------------------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a   97 (111)
T 2l6j_A           62 QQGLR----------------------YTSTAEHVAIRSKLQYRLELAQGAVGSVQIP   97 (111)
T ss_dssp             HHHHT----------------------SCSSTTSHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred             HHHHH----------------------hCCCccHHHHHHHHHHHHHHHHHHHHhHhhh
Confidence            65432                      12211     156677778877777766665

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=97.28  E-value=0.0081  Score=47.82  Aligned_cols=111  Identities=12%  Similarity=0.043  Sum_probs=66.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +.+.+...|..+...|++++|+..|.++      +.+.=                .++.....+|..+...|++++|+..
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~a------l~~~P----------------~~~~a~~~la~~~~~~g~~~~A~~~  173 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDA------WQLSN----------------QNGEIGLLLAETLIALNRSEDAEAV  173 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHTT----------------SCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHH------HHhCC----------------cchhHHHHHHHHHHHCCCHHHHHHH
Confidence            4456667777777888888888777776      22111                1234445667777777777777777


Q ss_pred             HHHcCChH---------HHHHHHHHcch---hhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQ---------DAFNLSQQHKK---LHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~---------~A~~la~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++-..+         -++.+......   ...+..++.+ .+.+++.+..+|..+...|++++|
T Consensus       174 l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~-~P~~~~~~~~la~~l~~~g~~~~A  238 (287)
T 3qou_A          174 LXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAE-NPEDAALATQLALQLHQVGRNEEA  238 (287)
T ss_dssp             HTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhc-CCccHHHHHHHHHHHHHcccHHHH
Confidence            77764311         01111111111   1122222112 456789999999999999999998

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=97.27  E-value=0.0015  Score=42.95  Aligned_cols=89  Identities=12%  Similarity=0.040  Sum_probs=62.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+..+|..+...|++++|+.+|.++      +++.-                .++.....+|..+...|++++|++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a------~~~~~----------------~~~~~~~~~a~~~~~~~~~~~A~~~   62 (112)
T 2kck_A            5 NPEEYYLEGVLQYDAGNYTESIDLFEKA------IQLDP----------------EESKYWLMKGKALYNLERYEEAVDC   62 (112)
T ss_dssp             STTGGGGHHHHHHSSCCHHHHHHHHHHH------HHHCC----------------CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhhHHHHHHHHHHH------HHhCc----------------CCHHHHHHHHHHHHHccCHHHHHHH
Confidence            3455667888889999999999998877      44322                1233445677777777877777776


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCC--CHHHHHHHHHHHHhC-CChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEP--NPVELKRLAIHFEED-KGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~e~~-g~~~~A  180 (198)
                      |.++-.                      +. +.  .+..+..+|..+... |++++|
T Consensus        63 ~~~a~~----------------------~~-~~~~~~~~~~~l~~~~~~~~~~~~~A   96 (112)
T 2kck_A           63 YNYVIN----------------------VI-EDEYNKDVWAAKADALRYIEGKEVEA   96 (112)
T ss_dssp             HHHHHH----------------------TS-CCTTCHHHHHHHHHHHTTCSSCSHHH
T ss_pred             HHHHHH----------------------hC-cccchHHHHHHHHHHHHHHhCCHHHH
Confidence            654311                      11 23  678889999999888 888887

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.26  E-value=0.0047  Score=42.06  Aligned_cols=89  Identities=8%  Similarity=-0.025  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +...|..+...|++++|++.|.++      ++..- .  ..          ..+.....+|..+...|++++|+..|.++
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~------~~~~p-~--~~----------~~~~~~~~lg~~~~~~~~~~~A~~~~~~~   65 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSF------LELYP-N--GV----------YTPNALYWLGESYYATRNFQLAEAQFRDL   65 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHHCS-S--ST----------THHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHH------HHHCC-C--Cc----------ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            456788888888888888888775      43322 1  10          00134556777777788887777766543


Q ss_pred             CChHHHHHHHHHcchhhHHhhhhhhcCCC--CHHHHHHHHHHHHhCCChhhH
Q psy12373        131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEP--NPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~--~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      -.                      +.++.  .+..+..+|..+...|++++|
T Consensus        66 ~~----------------------~~p~~~~~~~~~~~la~~~~~~g~~~~A   95 (129)
T 2xev_A           66 VS----------------------RYPTHDKAAGGLLKLGLSQYGEGKNTEA   95 (129)
T ss_dssp             HH----------------------HCTTSTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HH----------------------HCCCCcccHHHHHHHHHHHHHcCCHHHH
Confidence            11                      12221  277888899999899998888

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=97.26  E-value=0.005  Score=41.35  Aligned_cols=89  Identities=12%  Similarity=0.153  Sum_probs=64.1

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+..+|..+...|++++|+++|.++      +.+.-                .++.....+|..+...|++++|++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~------~~~~~----------------~~~~~~~~~a~~~~~~~~~~~A~~~   68 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKA------IELNP----------------ANAVYFCNRAAAYSKLGNYAGAVQD   68 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHH------HHcCC----------------CCHHHHHHHHHHHHHhhchHHHHHH
Confidence            3456777899999999999999998887      43321                1234455677878888888877777


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++-.                      + .+.++..+..+|..+...|++++|
T Consensus        69 ~~~~~~----------------------~-~~~~~~~~~~~~~~~~~~~~~~~A   99 (131)
T 2vyi_A           69 CERAIC----------------------I-DPAYSKAYGRMGLALSSLNKHVEA   99 (131)
T ss_dssp             HHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHh----------------------c-CccCHHHHHHHHHHHHHhCCHHHH
Confidence            654311                      1 234578889999999999999988

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=97.25  E-value=0.0053  Score=40.84  Aligned_cols=88  Identities=19%  Similarity=0.265  Sum_probs=56.2

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ...+..+|..+...|++++|+++|.++      ++..-                .++.....+|..+...|++++|+.+|
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~------~~~~~----------------~~~~~~~~la~~~~~~~~~~~A~~~~   66 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKA------LELDP----------------NNAEAWYNLGNAYYKQGDYDEAIEYY   66 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHCc----------------CcHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            456778899999999999999999887      33211                12333445666667777777776666


Q ss_pred             HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++-.                      + .+.++..+..++..+...|++++|
T Consensus        67 ~~~~~----------------------~-~~~~~~~~~~la~~~~~~~~~~~A   96 (125)
T 1na0_A           67 QKALE----------------------L-DPNNAEAWYNLGNAYYKQGDYDEA   96 (125)
T ss_dssp             HHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHH----------------------h-CCccHHHHHHHHHHHHHhcCHHHH
Confidence            54311                      1 123456666677777777777666

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.23  E-value=0.0037  Score=44.91  Aligned_cols=104  Identities=16%  Similarity=0.022  Sum_probs=63.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc--cCCHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH--LNDIRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAA  123 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~--~~~~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~A  123 (198)
                      ....+...|..+...|+|++|+.+|.++      ++++-..  ...+..... ....+ .......+|..+...|++++|
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~a------l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~nla~~~~~~~~~~~A   82 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDA------LTRLDTLILREKPGEPEW-VELDRKNIPLYANMSQCYLNIGDLHEA   82 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHHHTSCTTSHHH-HHHHHTHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhcccCCCCHHHH-HHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            3456778899999999999999999998      6664310  001100000 00011 122334566666666666666


Q ss_pred             HHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        124 IHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       124 v~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +..|.++                      +.+ .+..+..+..+|..+...|+|++|
T Consensus        83 ~~~~~~a----------------------l~~-~p~~~~a~~~~g~~~~~~g~~~~A  116 (162)
T 3rkv_A           83 EETSSEV----------------------LKR-EETNEKALFRRAKARIAAWKLDEA  116 (162)
T ss_dssp             HHHHHHH----------------------HHH-STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHH----------------------Hhc-CCcchHHHHHHHHHHHHHhcHHHH
Confidence            6555432                      112 245678888899999999998888

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=97.18  E-value=0.0033  Score=42.39  Aligned_cols=95  Identities=8%  Similarity=0.101  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ...+..+|..+...|++++|+.+|.++      +.+.-                .++.....+|..+...|++++|+.+|
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a------~~~~~----------------~~~~~~~~la~~~~~~~~~~~A~~~~   61 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKA------KELDP----------------TNMTYITNQAAVYFEKGDYNKCRELC   61 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHH------HhcCC----------------ccHHHHHHHHHHHHHhccHHHHHHHH
Confidence            355677889999999999999999887      44322                12344556788888888888888776


Q ss_pred             HHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        128 ILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       128 ~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .++      +.+....+..          ....+..+..+|..+...|++++|
T Consensus        62 ~~~------~~~~~~~~~~----------~~~~~~~~~~la~~~~~~~~~~~A   98 (131)
T 1elr_A           62 EKA------IEVGRENRED----------YRQIAKAYARIGNSYFKEEKYKDA   98 (131)
T ss_dssp             HHH------HHHHHHSTTC----------HHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHH------Hhhccccchh----------HHHHHHHHHHHHHHHHHhccHHHH
Confidence            654      2222111000          000156778888888888888888

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.17  E-value=0.00073  Score=58.32  Aligned_cols=86  Identities=27%  Similarity=0.229  Sum_probs=61.9

Q ss_pred             HHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHH
Q psy12373         15 LYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHA   94 (198)
Q Consensus        15 ~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a   94 (198)
                      .|.+.|++++|+++|.++      .++  ..++...+..+|..+...|++++|+++|.++      +++.-         
T Consensus        15 ~~~~~g~~~~A~~~~~~A------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~l~p---------   71 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQA------IEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRA------IELDK---------   71 (477)
T ss_dssp             STTTTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHSCT---------
T ss_pred             HHHHhCCHHHHHHHHHHH------HHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHH------HHhCC---------
Confidence            345567788888777544      222  3346788899999999999999999999887      43311         


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         95 VDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        95 ~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                             .++.....+|..+...|++++|++.|.++
T Consensus        72 -------~~~~~~~~lg~~~~~~g~~~eA~~~~~~a  100 (477)
T 1wao_1           72 -------KYIKGYYRRAASNMALGKFRAALRDYETV  100 (477)
T ss_dssp             -------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             -------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                   12344557788888888888888887654

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=97.14  E-value=0.0079  Score=47.79  Aligned_cols=89  Identities=15%  Similarity=-0.087  Sum_probs=64.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+...|..+...|++++|+++|.++      +.+.-                .++.....+|..+...|++++|+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~la~~~~~~~~~~~A~~~   60 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRA------ITRNP----------------LVAVYYTNRALCYLKMQQPEQALAD   60 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCS----------------CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------ccHHHHHHHHHHHHHhcCHHHHHHH
Confidence            4567778899999999999999999887      44321                1344455678888888888888777


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++-.                      + .+.++..+..+|..+...|++++|
T Consensus        61 ~~~al~----------------------~-~p~~~~~~~~lg~~~~~~g~~~~A   91 (281)
T 2c2l_A           61 CRRALE----------------------L-DGQSVKAHFFLGQCQLEMESYDEA   91 (281)
T ss_dssp             HHHHTT----------------------S-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHH----------------------h-CCCCHHHHHHHHHHHHHcCCHHHH
Confidence            665533                      1 234577788888888888888887

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.14  E-value=0.014  Score=50.17  Aligned_cols=120  Identities=15%  Similarity=0.123  Sum_probs=76.5

Q ss_pred             HHHHHHHHcCC---H------HHHHHHHHHccCHHHHHhhhhc---cC--Ch-HHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373         11 GKWTLYESAGN---Y------EKAATCYIQLKNWTKIGQLLPH---IK--SA-TTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus        11 ~Aa~~y~~~g~---~------~~Ai~~y~~~~~~~~a~~l~~~---~~--~~-~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      +|...|+++=.   +      ...+.++...|++++|..+..+   ++  ++ .++..++..+...|++++|.++|.++-
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al  383 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAR  383 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            66677766521   1      2334555566777766555542   22  33 477788999889999999999999985


Q ss_pred             C--------HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         76 D--------YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        76 ~--------~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .        +.....+.....|++++|..+-+.    .| ++.....++.++.+.|++++|..+|.++
T Consensus       384 ~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a  451 (530)
T 2ooe_A          384 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  451 (530)
T ss_dssp             TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred             hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence            3        112122321146888888776542    33 3555567788777888888887777665

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.13  E-value=0.0031  Score=43.65  Aligned_cols=85  Identities=12%  Similarity=0.070  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ....|..+...|++++|+..|.++      +++.-                .++.....+|..+...|++++|+..|.++
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~a------l~~~P----------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~a   77 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAV------CQKEP----------------EREEAWRSLGLTQAENEKDGLAIIALNHA   77 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HHHCC----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            456777888888888888888776      43322                13445567788888888888887776543


Q ss_pred             CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      =.                      +. +..+..+..+|..+...|++++|
T Consensus        78 l~----------------------l~-P~~~~~~~~la~~~~~~g~~~~A  104 (121)
T 1hxi_A           78 RM----------------------LD-PKDIAVHAALAVSHTNEHNANAA  104 (121)
T ss_dssp             HH----------------------HC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HH----------------------hC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence            11                      22 34677888999999888888887

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.11  E-value=0.0068  Score=40.20  Aligned_cols=68  Identities=12%  Similarity=0.124  Sum_probs=50.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      .-+..|.+.|+++.|++.|.++      .++  ..+++..+..+|..+...|++++|+++|.++      +++.- ..++
T Consensus        12 ~lg~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------l~l~~-~~~~   76 (100)
T 3ma5_A           12 ALAQEHLKHDNASRALALFEEL------VET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQG------IEVAR-EEGT   76 (100)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HHSC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH------HHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------Hhhhh-cCCc
Confidence            3456777788888888877544      222  2346788999999999999999999999997      77766 4445


Q ss_pred             HHH
Q psy12373         91 IRH   93 (198)
Q Consensus        91 ~~~   93 (198)
                      ...
T Consensus        77 ~~~   79 (100)
T 3ma5_A           77 QKD   79 (100)
T ss_dssp             HHH
T ss_pred             hhH
Confidence            443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=97.07  E-value=0.0011  Score=49.53  Aligned_cols=95  Identities=16%  Similarity=0.089  Sum_probs=47.7

Q ss_pred             HHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC
Q psy12373         28 CYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK  102 (198)
Q Consensus        28 ~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~  102 (198)
                      +....++|+++......     ......+...|..+...|+|++|+++|.++      +++.- ...++... .+-....
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a------l~~~~-~~~~~~~~-~~~~~~~   84 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEA------LDFFI-HTEEWDDQ-ILLDKKK   84 (198)
T ss_dssp             ---------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHTTT-TCTTCCCH-HHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHh-cccccchh-hHHHHHH
Confidence            33445555555444432     123456678899999999999999999988      55443 21111000 0000000


Q ss_pred             --CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        103 --CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       103 --~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                        .......+|..+...|++++|+..|.++
T Consensus        85 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  114 (198)
T 2fbn_A           85 NIEISCNLNLATCYNKNKDYPKAIDHASKV  114 (198)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence              0122335666666777777776666544

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=97.07  E-value=0.049  Score=46.81  Aligned_cols=134  Identities=10%  Similarity=-0.037  Sum_probs=89.3

Q ss_pred             CChHHHHHHHHHHHH-------cCCHH-------HHHHHHHHhcC---------HHHHHHHHhhccCCHHHHHHHHHh--
Q psy12373         46 KSATTFIQYAKAKEA-------MGSYR-------ESVGAYERAED---------YDNVVRVDLDHLNDIRHAVDIVKA--  100 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~-------~g~~~-------~A~~~Y~ka~~---------~~~av~l~~~~~~~~~~a~~l~~~--  100 (198)
                      .++.+...+|.++..       .|+++       +|++.|.++=.         |...+.++. ..|++++|..+-++  
T Consensus       270 ~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~-~~g~~~~A~~~~~~al  348 (530)
T 2ooe_A          270 HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEE-SRMKYEKVHSIYNRLL  348 (530)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHH-HTTCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHH-hcCCHHHHHHHHHHHh
Confidence            377888899999886       79987       89999999853         133445555 67999998877653  


Q ss_pred             -c-C-CH-HHHHHHHHHHHhcCCHHHHHHHHHHcCCh-----HHHH---HH-HHHcchhhHHhhhhh--hc-CCCCHHHH
Q psy12373        101 -K-K-CT-EGAKRIADYCNKHGDFGAAIHFLILSKCY-----QDAF---NL-SQQHKKLHEFGKFLL--EE-DEPNPVEL  164 (198)
Q Consensus       101 -~-~-~~-~~~~~~A~~~~~~g~~~~Av~~y~~ag~~-----~~A~---~l-a~~~~~~~~~~~~~~--l~-~~~~~~~~  164 (198)
                       . | ++ .....++.++.+.|++++|+..|.+|-..     .--+   .+ ....|..+....+..  +. .+.++...
T Consensus       349 ~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~  428 (530)
T 2ooe_A          349 AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYV  428 (530)
T ss_dssp             HSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHH
Confidence             2 2 23 24456788888899999999999887431     1111   11 112344332222221  22 24568899


Q ss_pred             HHHHHHHHhCCChhhH
Q psy12373        165 KRLAIHFEEDKGVLTS  180 (198)
Q Consensus       165 ~~~A~~~e~~g~~~~A  180 (198)
                      ..++.++...|++.+|
T Consensus       429 ~~~~~~~~~~g~~~~A  444 (530)
T 2ooe_A          429 LAYIDYLSHLNEDNNT  444 (530)
T ss_dssp             HHHHHHHTTTTCHHHH
T ss_pred             HHHHHHHHhCCCHhhH
Confidence            9999999899998888

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=97.05  E-value=0.0035  Score=42.52  Aligned_cols=89  Identities=16%  Similarity=0.030  Sum_probs=55.3

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+..+|..+...|++++|+++|.++      +++.-                .+......+|..+...|++++|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a------l~~~~----------------~~~~~~~~la~~~~~~~~~~~A~~~   72 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEA------IKRNP----------------KDAKLYSNRAACYTKLLEFQLALKD   72 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHH------HTTCT----------------TCHHHHHHHHHHHTTTTCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHcCC----------------CcHHHHHHHHHHHHHhccHHHHHHH
Confidence            4567778899999999999999999887      22111                1223344556666666666666655


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++-.                      + .+..+..+..+|..+...|++++|
T Consensus        73 ~~~a~~----------------------~-~~~~~~~~~~la~~~~~~~~~~~A  103 (133)
T 2lni_A           73 CEECIQ----------------------L-EPTFIKGYTRKAAALEAMKDYTKA  103 (133)
T ss_dssp             HHHHHH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHH----------------------h-CCCchHHHHHHHHHHHHHhhHHHH
Confidence            433211                      1 123456666666666666666666

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=97.05  E-value=0.0027  Score=52.01  Aligned_cols=124  Identities=15%  Similarity=0.044  Sum_probs=72.0

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCH--HHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDI--RHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAI  124 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~--~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av  124 (198)
                      ....+..+|..+...|++++|+.+|.++      +++.- ....+  +.+..+-.  ........+|..+...|++++|+
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~A------l~~~p-~~~~~~~~~~~~~~~--~~~~~~~nla~~~~~~g~~~~A~  216 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKI------VSWLE-YESSFSNEEAQKAQA--LRLASHLNLAMCHLKLQAFSAAI  216 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHTT-TCCCCCSHHHHHHHH--HHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHhh-ccccCChHHHHHHHH--HHHHHHHHHHHHHHHcCCHHHHH
Confidence            4567778899999999999999999988      66655 22111  11111100  01233446788888888888888


Q ss_pred             HHHHHcCC----hHHH-HHHH---HHcchhhH----HhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        125 HFLILSKC----YQDA-FNLS---QQHKKLHE----FGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       125 ~~y~~ag~----~~~A-~~la---~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..|.++=.    ...| +.++   ...+.++.    +..++.+ .+..+..+..++..+...|++.+|
T Consensus       217 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          217 ESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            88776522    1111 1111   12222221    1222122 234567777788877777777666

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=97.05  E-value=0.0094  Score=49.97  Aligned_cols=123  Identities=9%  Similarity=-0.009  Sum_probs=82.7

Q ss_pred             chHHHHHHHHHHc-----CCH---HHHHHHHHHccC-HHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESA-----GNY---EKAATCYIQLKN-WTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE   72 (198)
Q Consensus         7 ~~~~~Aa~~y~~~-----g~~---~~Ai~~y~~~~~-~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~   72 (198)
                      +++++|.++|.++     +++   ..-..++...|. ++.+...+.+     ..+..++..+|..+...|++++|+.+|.
T Consensus       111 g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~  190 (382)
T 2h6f_A          111 ERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIA  190 (382)
T ss_dssp             CCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHH
T ss_pred             CChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            6688888888765     111   223345666775 8777666653     3377899999999999999999999999


Q ss_pred             HhcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHh-cCCHHHHH-----HHHHHc
Q psy12373         73 RAEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNK-HGDFGAAI-----HFLILS  130 (198)
Q Consensus        73 ka~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~-~g~~~~Av-----~~y~~a  130 (198)
                      ++=..        ...-.++. .+|++++|+...++    .| +......++..+.. .|.+++|+     ++|.++
T Consensus       191 kal~ldP~~~~a~~~lg~~~~-~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~A  266 (382)
T 2h6f_A          191 DILNQDAKNYHAWQHRQWVIQ-EFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEM  266 (382)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHH-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHH
T ss_pred             HHHHhCccCHHHHHHHHHHHH-HcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHH
Confidence            98422        22333444 67899988876653    23 34555677888888 55546763     555544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.03  E-value=0.0097  Score=37.69  Aligned_cols=61  Identities=23%  Similarity=0.406  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFL  127 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y  127 (198)
                      ...+..+|..+...|++++|+.+|.++      +++.-                .++.....+|..+...|++++|+..|
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a------~~~~~----------------~~~~~~~~l~~~~~~~~~~~~A~~~~   66 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKA------LELDP----------------NNAEAWYNLGNAYYKQGDYDEAIEYY   66 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHH------HhcCC----------------CCHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            456778899999999999999999887      44321                12344556788888888888887776


Q ss_pred             HHc
Q psy12373        128 ILS  130 (198)
Q Consensus       128 ~~a  130 (198)
                      .++
T Consensus        67 ~~a   69 (91)
T 1na3_A           67 QKA   69 (91)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            554

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.95  E-value=0.025  Score=49.12  Aligned_cols=44  Identities=9%  Similarity=0.100  Sum_probs=25.7

Q ss_pred             HHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhC
Q psy12373        122 AAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEED  174 (198)
Q Consensus       122 ~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~  174 (198)
                      ..|..|.++|++++|+++..+-      .+   .+...++.++..+-.+|...
T Consensus       180 ~Li~~~~~~g~~d~A~~ll~~M------r~---~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          180 ALLKVSMDTKNADKVYKTLQRL------RD---LVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HH---HTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHHhhCCCHHHHHHHHHHH------HH---hCCCcCHHHHHHHHHHHhcC
Confidence            4455566666666666665322      11   24455677777777777653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.90  E-value=0.0068  Score=51.87  Aligned_cols=101  Identities=10%  Similarity=-0.027  Sum_probs=64.8

Q ss_pred             HHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHH-HHHHHHHHHhcCCHHHHHHHHHHcCChHHHH
Q psy12373         59 EAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEG-AKRIADYCNKHGDFGAAIHFLILSKCYQDAF  137 (198)
Q Consensus        59 e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~-~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~  137 (198)
                      ...|+|++|+.+|.++      +.+....+|.         .|++... ...+|..|...|++++|+.+|.++      +
T Consensus       309 ~~~g~~~eA~~~~~~~------L~i~~~~lg~---------~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a------L  367 (433)
T 3qww_A          309 KHYKSPSELLEICELS------QEKMSSVFED---------SNVYMLHMMYQAMGVCLYMQDWEGALKYGQKI------I  367 (433)
T ss_dssp             TTTSCHHHHHHHHHHH------HHHHTTTBCT---------TSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------H
T ss_pred             hhccCHHHHHHHHHHH------HHHhhCccCh---------hchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH------H
Confidence            4567788888888777      6666544444         2233222 235788888888888888888765      3


Q ss_pred             HHHHHcchhhHHhhhhhhcCC--CCHHHHHHHHHHHHhCCChhhHHhcCChhhHHhhh
Q psy12373        138 NLSQQHKKLHEFGKFLLEEDE--PNPVELKRLAIHFEEDKGVLTSFRVSQQSRAMPCS  193 (198)
Q Consensus       138 ~la~~~~~~~~~~~~~~l~~~--~~~~~~~~~A~~~e~~g~~~~A~~ag~~~~Al~l~  193 (198)
                      .+.         ..+  ++++  .+...+.++|..|..+|+|++|..  -+.+|+++.
T Consensus       368 ~i~---------~~~--lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~--~~~~Al~i~  412 (433)
T 3qww_A          368 KPY---------SKH--YPVYSLNVASMWLKLGRLYMGLENKAAGEK--ALKKAIAIM  412 (433)
T ss_dssp             HHH---------HHH--SCSSCHHHHHHHHHHHHHHHHTTCHHHHHH--HHHHHHHHH
T ss_pred             HHH---------HHH--cCCCChHHHHHHHHHHHHHHhccCHHHHHH--HHHHHHHHH
Confidence            333         222  4432  235578899999999999999921  244555544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=96.89  E-value=0.025  Score=49.13  Aligned_cols=85  Identities=9%  Similarity=-0.017  Sum_probs=67.4

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhc---------CHHHHHHHHhhccCCHHHHHHHHHh------cCCHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAE---------DYDNVVRVDLDHLNDIRHAVDIVKA------KKCTEGAKRIA  111 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~---------~~~~av~l~~~~~~~~~~a~~l~~~------~~~~~~~~~~A  111 (198)
                      +...+..+-+.+...|++++|.++|....         .|..+|..|+ ..|++++|.++..+      .|+......+-
T Consensus       104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~-~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li  182 (501)
T 4g26_A          104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFC-RKGDADKAYEVDAHMVESEVVPEEPELAALL  182 (501)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHH-HCCCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            56667777888999999999999998654         2578899999 88999999988753      23444455677


Q ss_pred             HHHHhcCCHHHHHHHHHHcCC
Q psy12373        112 DYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       112 ~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      +.|.+.|++++|.++|.+...
T Consensus       183 ~~~~~~g~~d~A~~ll~~Mr~  203 (501)
T 4g26_A          183 KVSMDTKNADKVYKTLQRLRD  203 (501)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhCCCHHHHHHHHHHHHH
Confidence            889999999999999987643

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.88  E-value=0.022  Score=46.61  Aligned_cols=53  Identities=19%  Similarity=0.186  Sum_probs=43.2

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHh-------cCH---HHHHHHHhhccCCHHHHHHHHHh
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERA-------EDY---DNVVRVDLDHLNDIRHAVDIVKA  100 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka-------~~~---~~av~l~~~~~~~~~~a~~l~~~  100 (198)
                      +......+|..+...|++++|++.+.++       +..   ..+|++++ ..|+.+.|.++.++
T Consensus        99 ~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L-~~~r~d~A~k~l~~  161 (310)
T 3mv2_B           99 SPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVAL-LNNNVSTASTIFDN  161 (310)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHH-HTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHH-HCCCHHHHHHHHHH
Confidence            4555678899999999999999999998       433   46688888 88999999888853

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=96.84  E-value=0.06  Score=48.49  Aligned_cols=140  Identities=11%  Similarity=0.124  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHH---------H-HHHHHhhccCCHHHHHH-----------HHHhc-C----
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYD---------N-VVRVDLDHLNDIRHAVD-----------IVKAK-K----  102 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~---------~-av~l~~~~~~~~~~a~~-----------l~~~~-~----  102 (198)
                      .++..+.+.| ..++..+|+++|.-.....         . .-++.+ ..+.++..+-           +..+. +    
T Consensus       358 rLI~~Yt~~F-~~td~~~Al~Y~~li~l~~g~~~~~~~~~~l~eLvl-etr~f~~LLG~i~~dG~r~~G~i~~~~~li~l  435 (661)
T 2qx5_A          358 NILANYTKSF-RYSDPRVAVEYLVLITLNEGPTDVELCHEALRELVL-ETKEFTVLLGKIGRDGARIPGVIEERQPLLHV  435 (661)
T ss_dssp             HHHHHHHTTT-TTTCHHHHHHHHHGGGGSCCHHHHHHHHHHHHHHHH-HHCCHHHHHCEECTTSCEECCHHHHTCGGGTC
T ss_pred             HHHHHHHHHh-hcCCHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH-hcccHHHHcCCcCCCCCcCcchHHHhhccccc
Confidence            3455556666 4559999999998765431         1 223333 3356665431           11211 1    


Q ss_pred             -CH-----HHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhh---hcC----------CCCHHH
Q psy12373        103 -CT-----EGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLL---EED----------EPNPVE  163 (198)
Q Consensus       103 -~~-----~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~---l~~----------~~~~~~  163 (198)
                       ++     .....+|..++..|.++.||.+|..||+|+.++++....     +.+++.   ++.          ......
T Consensus       436 ~d~~~~~~~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~~-----Ls~~l~~~~~~~~~~~~~~~~~~~l~~l  510 (661)
T 2qx5_A          436 RDEKEFLHTITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNSL-----LSDTLSASDLDQPLVGPDDNSETNPVLL  510 (661)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHH-----HHHHHHHSCTTSCSSCSSCCTTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHHH-----HHHHhcccccccccccccccccccHHHH
Confidence             21     123467889999999999999999999999999998544     233321   111          122345


Q ss_pred             HHHHHHHHHhCCCh--------hhH-------------HhcCChhhHHhhhhh
Q psy12373        164 LKRLAIHFEEDKGV--------LTS-------------FRVSQQSRAMPCSSG  195 (198)
Q Consensus       164 ~~~~A~~~e~~g~~--------~~A-------------~~ag~~~~Al~l~~~  195 (198)
                      ...+.+.|..++.+        ..+             ..+|+|..|++...+
T Consensus       511 a~~i~~~y~~~~~~~~~~~~~~~~t~~lLl~l~~f~~~~~~g~~~~AL~~i~~  563 (661)
T 2qx5_A          511 ARRMASIYFDNAGISRQIHVKNKEICMLLLNISSIRELYFNKQWQETLSQMEL  563 (661)
T ss_dssp             HHHHHHHHTTCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCchhhhhccHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            55566666554321        111             778999999987654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.79  E-value=0.015  Score=39.06  Aligned_cols=63  Identities=11%  Similarity=0.053  Sum_probs=49.9

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373         46 KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH  125 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~  125 (198)
                      .++.++..+|..+...|++++|+.+|.++      +++.-                ..+.....+|..+...|++++|+.
T Consensus        17 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~~~~~la~~~~~~g~~~~A~~   74 (115)
T 2kat_A           17 DNMLLRFTLGKTYAEHEQFDAALPHLRAA------LDFDP----------------TYSVAWKWLGKTLQGQGDRAGARQ   74 (115)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHccCHHHHHHHHHHH------HHHCC----------------CcHHHHHHHHHHHHHcCCHHHHHH
Confidence            47788999999999999999999999887      54322                123445678999999999999999


Q ss_pred             HHHHc
Q psy12373        126 FLILS  130 (198)
Q Consensus       126 ~y~~a  130 (198)
                      .|.++
T Consensus        75 ~~~~a   79 (115)
T 2kat_A           75 AWESG   79 (115)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.76  E-value=0.0072  Score=41.80  Aligned_cols=92  Identities=16%  Similarity=0.077  Sum_probs=59.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +...+...|..+...|++++|+++|.++      +++.-    +...         .......+|..+...|++++|+..
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a------~~~~~----~~~~---------~~~~~~~~a~~~~~~~~~~~A~~~   87 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQA------LGLDA----TPQD---------QAVLHRNRAACHLKLEDYDKAETE   87 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHH------HTSCC----CHHH---------HHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHcc----cchH---------HHHHHHHHHHHHHHHccHHHHHHH
Confidence            5677888999999999999999999987      32211    1000         022234566666677777766666


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++-.                      + .+..+..+..+|..+...|++++|
T Consensus        88 ~~~~~~----------------------~-~~~~~~~~~~~a~~~~~~~~~~~A  118 (148)
T 2dba_A           88 ASKAIE----------------------K-DGGDVKALYRRSQALEKLGRLDQA  118 (148)
T ss_dssp             HHHHHH----------------------H-TSCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHh----------------------h-CccCHHHHHHHHHHHHHcCCHHHH
Confidence            544311                      1 123467777788888778887777

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=96.72  E-value=0.019  Score=40.62  Aligned_cols=100  Identities=11%  Similarity=0.104  Sum_probs=68.9

Q ss_pred             CCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHH
Q psy12373         20 GNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVK   99 (198)
Q Consensus        20 g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~   99 (198)
                      +|+++|++.|.++      .+    ..++...  +|..+...+.++.|+++|.++      +     ..           
T Consensus         9 ~d~~~A~~~~~~a------a~----~g~~~a~--lg~~y~~g~~~~~A~~~~~~A------a-----~~-----------   54 (138)
T 1klx_A            9 KDLKKAIQYYVKA------CE----LNEMFGC--LSLVSNSQINKQKLFQYLSKA------C-----EL-----------   54 (138)
T ss_dssp             HHHHHHHHHHHHH------HH----TTCTTHH--HHHHTCTTSCHHHHHHHHHHH------H-----HT-----------
T ss_pred             cCHHHHHHHHHHH------Hc----CCCHhhh--HHHHHHcCCCHHHHHHHHHHH------H-----cC-----------
Confidence            4567777777554      21    1233333  888888888888888888877      2     21           


Q ss_pred             hcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHh--
Q psy12373        100 AKKCTEGAKRIADYCNK----HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEE--  173 (198)
Q Consensus       100 ~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~--  173 (198)
                        .++.....++..|..    .+|+++|+++|.+|-.                         ...+..+..++..|..  
T Consensus        55 --g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~-------------------------~g~~~a~~~Lg~~y~~G~  107 (138)
T 1klx_A           55 --NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACG-------------------------LNDQDGCLILGYKQYAGK  107 (138)
T ss_dssp             --TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-------------------------TTCHHHHHHHHHHHHHTS
T ss_pred             --CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHc-------------------------CCCHHHHHHHHHHHHCCC
Confidence              345566778888887    7889999998887721                         1356777778887777  


Q ss_pred             --CCChhhH
Q psy12373        174 --DKGVLTS  180 (198)
Q Consensus       174 --~g~~~~A  180 (198)
                        .+++.+|
T Consensus       108 g~~~d~~~A  116 (138)
T 1klx_A          108 GVVKNEKQA  116 (138)
T ss_dssp             SSCCCHHHH
T ss_pred             CCCcCHHHH
Confidence              7777777

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=96.70  E-value=0.011  Score=50.49  Aligned_cols=74  Identities=12%  Similarity=-0.029  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC-HHH-HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND-IRH-AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIH  125 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~-~~~-a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~  125 (198)
                      ...+...|..+...|+|++|+.+|.++      +++.- .... +++ ...+  ..........+|..+.+.|++++|+.
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~A------l~~~p-~~~~~~~~~~~~~--~~~~~~~~~nla~~~~~~g~~~~A~~  338 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKI------VSWLE-MEYGLSEKESKAS--ESFLLAAFLNLAMCYLKLREYTKAVE  338 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHT-TCCSCCHHHHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHH------HHHhc-ccccCChHHHHHH--HHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            456778899999999999999999988      77665 2211 111 1100  00011233457777888888888887


Q ss_pred             HHHHc
Q psy12373        126 FLILS  130 (198)
Q Consensus       126 ~y~~a  130 (198)
                      .|.++
T Consensus       339 ~~~~a  343 (457)
T 1kt0_A          339 CCDKA  343 (457)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77665

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=96.68  E-value=0.078  Score=44.97  Aligned_cols=132  Identities=11%  Similarity=0.062  Sum_probs=86.0

Q ss_pred             ChHHHHHHHHHHHHcC---CHHHHHHHHHHhcCH--------HHHHHHHhhcc----CCHHHHHHHHHhc--CCHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMG---SYRESVGAYERAEDY--------DNVVRVDLDHL----NDIRHAVDIVKAK--KCTEGAKR  109 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g---~~~~A~~~Y~ka~~~--------~~av~l~~~~~----~~~~~a~~l~~~~--~~~~~~~~  109 (198)
                      ++..+..+|..+...|   ++++|+++|.++-+.        ...-.++. ..    +++++|+..-++.  .++.....
T Consensus       175 ~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~-~g~~~~~d~~~A~~~~~~aa~g~~~a~~~  253 (452)
T 3e4b_A          175 TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLG-DATLGTPDEKTAQALLEKIAPGYPASWVS  253 (452)
T ss_dssp             CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHT-CGGGSSCCHHHHHHHHHHHGGGSTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHcCCCHHHHHH
Confidence            5668889999999999   999999999987321        12233443 33    6888887765543  34556778


Q ss_pred             HHHH-H--HhcCCHHHHHHHHHHcCC---hHHHHHHHH--Hcc-----hhhHHhhhhh-hcCCCCHHHHHHHHHHHHh--
Q psy12373        110 IADY-C--NKHGDFGAAIHFLILSKC---YQDAFNLSQ--QHK-----KLHEFGKFLL-EEDEPNPVELKRLAIHFEE--  173 (198)
Q Consensus       110 ~A~~-~--~~~g~~~~Av~~y~~ag~---~~~A~~la~--~~~-----~~~~~~~~~~-l~~~~~~~~~~~~A~~~e~--  173 (198)
                      ++.. +  ...+++++|+++|.++-.   ..--+.|+.  ..|     .++....... .. ...+..+..++..|..  
T Consensus       254 Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-~g~~~A~~~Lg~~y~~G~  332 (452)
T 3e4b_A          254 LAQLLYDFPELGDVEQMMKYLDNGRAADQPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-GREVAADYYLGQIYRRGY  332 (452)
T ss_dssp             HHHHHHHSGGGCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-TTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHHCCC
Confidence            8886 5  568999999999998643   222233332  122     2222222211 12 6789999999998876  


Q ss_pred             --CCChhhH
Q psy12373        174 --DKGVLTS  180 (198)
Q Consensus       174 --~g~~~~A  180 (198)
                        ..++.+|
T Consensus       333 g~~~d~~~A  341 (452)
T 3e4b_A          333 LGKVYPQKA  341 (452)
T ss_dssp             TSSCCHHHH
T ss_pred             CCCcCHHHH
Confidence              4477777

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=96.63  E-value=0.064  Score=39.52  Aligned_cols=106  Identities=14%  Similarity=0.039  Sum_probs=70.7

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHH-HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRH-AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~-a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      ...+...|..+...|+|++|++.|.++      +++.- .  .++. +..+..  .+.......|..+.+.|++++|+..
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kA------L~l~p-~--~~~~~a~~~~~--~~a~a~~n~g~al~~Lgr~~eAl~~   79 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRA------MEISH-T--MPPEEAFDHAG--FDAFCHAGLAEALAGLRSFDEALHS   79 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHT-T--SCTTSCCCHHH--HHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH------HhhCC-C--Ccchhhhhhcc--chHHHHHHHHHHHHHCCCHHHHHHH
Confidence            456678899999999999999999998      77765 2  1110 000000  0011334577888899999999988


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHH----HHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVEL----KRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~----~~~A~~~e~~g~~~~A  180 (198)
                      |.+|      +++         |...+.+.+ ..+..+    ...+..+...|++++|
T Consensus        80 ~~kA------L~l---------~n~~~e~~p-d~~~A~~~~~~~rG~aL~~lgr~eEA  121 (159)
T 2hr2_A           80 ADKA------LHY---------FNRRGELNQ-DEGKLWISAVYSRALALDGLGRGAEA  121 (159)
T ss_dssp             HHHH------HHH---------HHHHCCTTS-THHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHH------HHh---------hhccccCCC-chHHHHHHHHHhHHHHHHHCCCHHHH
Confidence            7644      444         222211233 456777    8999999999999998

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=96.59  E-value=0.0041  Score=42.30  Aligned_cols=69  Identities=19%  Similarity=0.250  Sum_probs=47.1

Q ss_pred             cchHHHHHHHHHHcCC-----HH------HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHH
Q psy12373          6 LTLDRGKWTLYESAGN-----YE------KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVG   69 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~-----~~------~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~   69 (198)
                      .|++++|..+|.++=.     ++      ....+|...|+++.|...+.+     .+++.++..+|..+...|++++|++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            4566666666665522     22      233456667777777666543     3478899999999999999999999


Q ss_pred             HHHHh
Q psy12373         70 AYERA   74 (198)
Q Consensus        70 ~Y~ka   74 (198)
                      +|.++
T Consensus        83 ~~~~a   87 (117)
T 3k9i_A           83 LLLKI   87 (117)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            99987

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=96.58  E-value=0.0067  Score=49.69  Aligned_cols=83  Identities=13%  Similarity=0.051  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcC-------------------------HHHHHHHHhhccCCHHHHHHHHHh----
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAED-------------------------YDNVVRVDLDHLNDIRHAVDIVKA----  100 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~-------------------------~~~av~l~~~~~~~~~~a~~l~~~----  100 (198)
                      .+...|..+...|+|++|+.+|.++-.                         +...-.++. .+|+|++|...+.+    
T Consensus       181 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~-~~g~~~~A~~~~~~al~~  259 (338)
T 2if4_A          181 RRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLI-KLKRYDEAIGHCNIVLTE  259 (338)
T ss_dssp             HHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHH-TTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHh
Confidence            344556666666666666666665432                         122233344 56666666655543    


Q ss_pred             cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCCh
Q psy12373        101 KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKCY  133 (198)
Q Consensus       101 ~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~  133 (198)
                      .| +......+|..+...|++++|+..|.++-..
T Consensus       260 ~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l  293 (338)
T 2if4_A          260 EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY  293 (338)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            12 3555667888888888888888888887553

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=96.55  E-value=0.017  Score=38.85  Aligned_cols=70  Identities=13%  Similarity=-0.002  Sum_probs=51.7

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      ++.-+..+|+++...|+|..|+..|..|      ++..- .-..+        ..+.++....+|..+.+.|+++.|+.+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~A------l~~~~-~~~~~--------~~~~~~i~~~L~~~~~~~g~~~~A~~~   68 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQA------LRQLD-EGEIS--------TIDKVSVLDYLSYAVYQQGDLDKALLL   68 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-TTCCC--------SSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHH------HHhhh-ccCCC--------cccHHHHHHHHHHHHHHccCHHHHHHH
Confidence            3556789999999999999999999988      66654 21110        112234456789989999999999988


Q ss_pred             HHHcC
Q psy12373        127 LILSK  131 (198)
Q Consensus       127 y~~ag  131 (198)
                      |.++-
T Consensus        69 ~~~al   73 (104)
T 2v5f_A           69 TKKLL   73 (104)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87764

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=96.54  E-value=0.03  Score=46.51  Aligned_cols=114  Identities=11%  Similarity=0.016  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccCHHHHH-------hhh-hccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH---
Q psy12373          9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIG-------QLL-PHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY---   77 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~-------~l~-~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~---   77 (198)
                      +..-+..|.+.|+++.|++.|.++-....-.       ... .......++..+|..+...|++++|+++|.++-..   
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  305 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS  305 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch
Confidence            3445667778899999999987664322110       000 01124577888999999999999999999988532   


Q ss_pred             -----HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHH
Q psy12373         78 -----DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAA  123 (198)
Q Consensus        78 -----~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~A  123 (198)
                           ...-.++. .+|++++|....++    .| ++.....++..+...++.+++
T Consensus       306 ~~~a~~~lg~~~~-~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          306 NTKALYRRAQGWQ-GLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             CHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence                 22334555 78999998776543    22 344444566666655555544

>2pm7_A Protein WEB1, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm6_A 3mzl_B

Probab=96.49  E-value=0.06  Score=45.57  Aligned_cols=129  Identities=11%  Similarity=0.055  Sum_probs=88.4

Q ss_pred             CHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHH-HHH-HHHHHhcCC--HHHHHHHHHHcCChHHHHH
Q psy12373         63 SYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGA-KRI-ADYCNKHGD--FGAAIHFLILSKCYQDAFN  138 (198)
Q Consensus        63 ~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~-~~~-A~~~~~~g~--~~~Av~~y~~ag~~~~A~~  138 (198)
                      ..+.-|.-..-.|+++.||++|+ ..++|-+|+=|+... .++.. ..+ -.|+.+...  .-..+-..+-.++|.+.+.
T Consensus       145 ~~d~~I~~aLl~Gd~e~AV~~cl-~~~r~adAllLA~~g-g~el~~~~vq~~Y~~k~~~~~~~~rll~~iv~~n~~d~V~  222 (399)
T 2pm7_A          145 NIEQTISKNLVSGNIKSAVKNSL-ENDLMMEAMVIALDS-NNERLKESVKNAYFAKYGSKSSLSRILYSISKREVDDLVE  222 (399)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH-TTTCHHHHHHHHTTC-CCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHTTCCHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHH-HCCChHHHHHHHHhc-CHHHHHHHHHHHHHHhcccCchHHHHHHHHHccCHHHHHh
Confidence            34666777777899999999999 889999999998654 44444 444 346665543  4445557778888887665


Q ss_pred             HHHHcchhhHH-hhhhhhcC-C--CCHHHHHHHHHHHHhCCChhhH----HhcCChhhHHhhhh
Q psy12373        139 LSQQHKKLHEF-GKFLLEED-E--PNPVELKRLAIHFEEDKGVLTS----FRVSQQSRAMPCSS  194 (198)
Q Consensus       139 la~~~~~~~~~-~~~~~l~~-~--~~~~~~~~~A~~~e~~g~~~~A----~~ag~~~~Al~l~~  194 (198)
                      -+ .-+.+... .-+++=++ +  .-+.+...++.-++..|+...|    +-||++++.+.+-.
T Consensus       223 ~~-~l~~WkE~La~i~t~a~~e~~ef~~Lc~~LG~RL~~~g~~~~A~lCYi~Ag~~dk~v~iW~  285 (399)
T 2pm7_A          223 NL-DVSQWKFISKAIQNLYPNDIAQRNEMMIKLGDRMKENGHRQDSLTLYLAAGSLDKVASIWL  285 (399)
T ss_dssp             HB-CGGGHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cC-ChhhHHHHHHHHHhcCCccHhHHHHHHHHHHHHHHhCCChhhhhHHHHhhCCHHHHHHHHH
Confidence            43 22233222 22211122 3  3477778999999999999888    99999999888753

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=96.38  E-value=0.0075  Score=51.93  Aligned_cols=103  Identities=18%  Similarity=0.218  Sum_probs=68.3

Q ss_pred             cchHHHHHHHHHHcCC--------HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESAGN--------YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYE   72 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~--------~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~   72 (198)
                      .++|++|.++|.++=.        +.....+|.+.+++++|...+.+     .++...+..+|..+...|++++|+++|.
T Consensus        19 ~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~   98 (477)
T 1wao_1           19 AKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYE   98 (477)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4789999999987621        23456678888999988776653     2377889999999999999999999999


Q ss_pred             HhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHH--HHhcCCHHHHHHHHHHc
Q psy12373         73 RAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADY--CNKHGDFGAAIHFLILS  130 (198)
Q Consensus        73 ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~--~~~~g~~~~Av~~y~~a  130 (198)
                      ++      +++.- .  +             +.....++..  +...|++++|+++|.+.
T Consensus        99 ~a------l~~~p-~--~-------------~~~~~~l~~~~~~~~~g~~~~A~~~~~~~  136 (477)
T 1wao_1           99 TV------VKVKP-H--D-------------KDAKMKYQECNKIVKQKAFERAIAGDEHK  136 (477)
T ss_dssp             HH------HHHST-T--C-------------TTHHHHHHHHHHHHHHHHHCCC------C
T ss_pred             HH------HHhCC-C--C-------------HHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            87      55432 1  1             1122233333  66678888888887743

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.16  E-value=8.5e-07  Score=76.89  Aligned_cols=166  Identities=14%  Similarity=0.139  Sum_probs=102.9

Q ss_pred             HHHHHHHcCCHHHHHHHHH-HccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---HHHHHHHHhhc
Q psy12373         12 KWTLYESAGNYEKAATCYI-QLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAED---YDNVVRVDLDH   87 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~-~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---~~~av~l~~~~   87 (198)
                      |-..|.+-+....|+...+ ..++.+++.+.+.+++.+.+..++|+..-+.|...+||+.|+||+|   +...|+.+- +
T Consensus        17 AF~iykKf~~~~~A~~VL~e~i~~ldRa~eyA~~~n~p~VWs~LgkAqL~~~~v~eAIdsyIkA~Dps~y~eVi~~A~-~   95 (624)
T 3lvg_A           17 RGSHMLKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAAN-T   95 (624)
T ss_dssp             ----------CCSTTTTCCGGGCCSTTTTTSSSSCCCCCCSSSHHHHTTTSSSCTTTTTSSCCCSCCCSSSHHHHHTT-T
T ss_pred             HHHHHHhccCcHHHHHHHHHhccccHHHHHHHHHhCCccHHHHHHHHHHccCchHHHHHHHHhCCChHHHHHHHHHHH-h
Confidence            4455666666666666555 4566778888888888999999999999999999999999999998   478999998 8


Q ss_pred             cCCHHHHHHHHHhcC----C----HHH------------------------HHHHHHHHHhcCCHHHHHHHHHHcCChHH
Q psy12373         88 LNDIRHAVDIVKAKK----C----TEG------------------------AKRIADYCNKHGDFGAAIHFLILSKCYQD  135 (198)
Q Consensus        88 ~~~~~~a~~l~~~~~----~----~~~------------------------~~~~A~~~~~~g~~~~Av~~y~~ag~~~~  135 (198)
                      .|.|++.++.....+    +    ++.                        ...+|.-|-..|.|+.|.-+|..-.+|.+
T Consensus        96 ~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~ak  175 (624)
T 3lvg_A           96 SGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGR  175 (624)
T ss_dssp             SSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTTSCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTT
T ss_pred             CCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHHcCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHH
Confidence            899999987765322    1    111                        23345556666777777777766666532


Q ss_pred             HHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        136 AFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       136 A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      =..-...-+.+....+.  -.+..++.+-..+-..+.+.+.|.-|
T Consensus       176 LAstLV~L~~yq~AVda--ArKAns~ktWKeV~~ACvd~~EfrLA  218 (624)
T 3lvg_A          176 LASTLVHLGEYQAAVDG--ARKANSTRTWKEVCFACVDGKEFRLA  218 (624)
T ss_dssp             TSSSSSSCSGGGSSTTT--TTTCCSSCSHHHHTHHHHHSCTTTTT
T ss_pred             HHHHHHHHHHHHHHHHH--HHhcCChhHHHHHHHHHhCchHHHHH
Confidence            11111111222111221  12345556666666666666666666

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=96.07  E-value=0.034  Score=37.21  Aligned_cols=60  Identities=10%  Similarity=0.078  Sum_probs=42.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      -+..|...|+++.|+..|.++      .++  .......+..+|..+...|++++|+.+|.++      +++.-
T Consensus        25 lg~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~   84 (115)
T 2kat_A           25 LGKTYAEHEQFDAALPHLRAA------LDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG------LAAAQ   84 (115)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHH------HHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhcc
Confidence            345556666666666665433      211  2236778889999999999999999999987      66655

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.05  E-value=0.027  Score=36.52  Aligned_cols=54  Identities=15%  Similarity=0.236  Sum_probs=41.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChH-HHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSAT-TFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~-l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +..|.+.|+++.|+++|.++      ..+  ...++. ++..+|..+...|++++|+++|.++
T Consensus         7 a~~~~~~~~~~~A~~~~~~a------l~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEF------LQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH------HHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHH------HHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45566678888888888554      221  234667 8899999999999999999999988

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=96.04  E-value=0.11  Score=42.41  Aligned_cols=91  Identities=13%  Similarity=0.097  Sum_probs=41.5

Q ss_pred             chHHHHHHHHHHc-------CCHH---HHHHHHHHccCHHHHHhhhhc---cCC------hHHHHHHHHH----HHHcCC
Q psy12373          7 TLDRGKWTLYESA-------GNYE---KAATCYIQLKNWTKIGQLLPH---IKS------ATTFIQYAKA----KEAMGS   63 (198)
Q Consensus         7 ~~~~~Aa~~y~~~-------g~~~---~Ai~~y~~~~~~~~a~~l~~~---~~~------~~l~~~~A~~----~e~~g~   63 (198)
                      |++++|.+++.+.       +..+   .++.+|.+.|+.+.|..++.+   .++      ..++..++..    ....+.
T Consensus       114 g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~  193 (310)
T 3mv2_B          114 GDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKET  193 (310)
T ss_dssp             TCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCST
T ss_pred             CCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCcc
Confidence            4555555555554       2221   344555555555555555532   222      2444444422    222235


Q ss_pred             HHHHHHHHHHhcC-------HHHHHHHHhhccCCHHHHHHHH
Q psy12373         64 YRESVGAYERAED-------YDNVVRVDLDHLNDIRHAVDIV   98 (198)
Q Consensus        64 ~~~A~~~Y~ka~~-------~~~av~l~~~~~~~~~~a~~l~   98 (198)
                      +.+|...|...-+       ....+.++. ++|+|++|.++.
T Consensus       194 ~q~A~~~f~El~~~~p~~~~~~lLln~~~-~~g~~~eAe~~L  234 (310)
T 3mv2_B          194 ATSNFYYYEELSQTFPTWKTQLGLLNLHL-QQRNIAEAQGIV  234 (310)
T ss_dssp             TTHHHHHHHHHHTTSCSHHHHHHHHHHHH-HHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccHHHHHHHHH-HcCCHHHHHHHH
Confidence            6666655555432       112233444 556666655554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=95.97  E-value=0.021  Score=37.49  Aligned_cols=56  Identities=20%  Similarity=0.285  Sum_probs=43.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .-+..|...|++++|++.|.++      .++  ...++.++..+|..+...|++++|+++|.++
T Consensus         9 ~~g~~~~~~~~~~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a   64 (111)
T 2l6j_A            9 EQGNSLFKQGLYREAVHCYDQL------ITA--QPQNPVGYSNKAMALIKLGEYTQAIQMCQQG   64 (111)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH------Hhc--CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            4456677778888888887554      222  2346788999999999999999999999987

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=95.93  E-value=0.018  Score=42.49  Aligned_cols=66  Identities=17%  Similarity=0.262  Sum_probs=41.2

Q ss_pred             ccCChHHHHHHHHHHHHcCCHH----------HHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         44 HIKSATTFIQYAKAKEAMGSYR----------ESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADY  113 (198)
Q Consensus        44 ~~~~~~l~~~~A~~~e~~g~~~----------~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~  113 (198)
                      ...++..+..||..+...+.++          +|+..|.++      |++-=                ...+....++..
T Consensus        32 ~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~A------L~ldP----------------~~~~A~~~LG~a   89 (158)
T 1zu2_A           32 NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA------LLIDP----------------KKDEAVWCIGNA   89 (158)
T ss_dssp             CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHH------HHhCc----------------CcHHHHHHHHHH
Confidence            3447888999999888887764          555555555      33221                123344456666


Q ss_pred             HHhc-----------CCHHHHHHHHHHcC
Q psy12373        114 CNKH-----------GDFGAAIHFLILSK  131 (198)
Q Consensus       114 ~~~~-----------g~~~~Av~~y~~ag  131 (198)
                      |.+.           |++++|+++|.+|=
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl  118 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAV  118 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHH
Confidence            6554           47888888777653

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=95.90  E-value=0.029  Score=35.32  Aligned_cols=56  Identities=23%  Similarity=0.402  Sum_probs=42.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .-+..|...|++++|+..|.++-      ++  ...++..+..+|..+...|++++|+++|.++
T Consensus        14 ~la~~~~~~~~~~~A~~~~~~a~------~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a   69 (91)
T 1na3_A           14 NLGNAYYKQGDYDEAIEYYQKAL------EL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA   69 (91)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHH------hc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            34566777788888888775542      22  2246788889999999999999999999887

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=95.49  E-value=0.031  Score=47.66  Aligned_cols=79  Identities=8%  Similarity=-0.074  Sum_probs=55.0

Q ss_pred             cchHHHHHHHHHHcC----------------CHHHHHHHHHHccCHHHHHhhhhc-------------cCChHHHHHHHH
Q psy12373          6 LTLDRGKWTLYESAG----------------NYEKAATCYIQLKNWTKIGQLLPH-------------IKSATTFIQYAK   56 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g----------------~~~~Ai~~y~~~~~~~~a~~l~~~-------------~~~~~l~~~~A~   56 (198)
                      .++|++|..+|+++=                -+..+...|...|+|++|..+..+             .+....+..+|.
T Consensus       300 ~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~  379 (429)
T 3qwp_A          300 HWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK  379 (429)
T ss_dssp             TTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH
Confidence            356777777776551                134455666667777776555541             113446668999


Q ss_pred             HHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         57 AKEAMGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        57 ~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      .+-..|++++|+.+|.+|      +++....+|.
T Consensus       380 ~~~~~g~~~eA~~~~~~A------l~i~~~~lG~  407 (429)
T 3qwp_A          380 LQLHQGMFPQAMKNLRLA------FDIMRVTHGR  407 (429)
T ss_dssp             HHHHTTCHHHHHHHHHHH------HHHHHHHTCT
T ss_pred             HHHhcCCHHHHHHHHHHH------HHHHHHhcCC
Confidence            999999999999999999      7777755565

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.45  E-value=0.071  Score=34.38  Aligned_cols=56  Identities=14%  Similarity=0.147  Sum_probs=36.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHH-HHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTE-GAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~-~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ..|..+...|++++|++.|.++      +++.-                .++. ....+|..+...|++++|++.|.++
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~a------l~~~p----------------~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a   61 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEF------LQTEP----------------VGKDEAYYLMGNAYRKLGDWQKALNNYQSA   61 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH------HHHCS----------------STHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHH------HHHCC----------------CcHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4566666677777777776665      33211                1234 4557888888889999988888665

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.63  E-value=0.16  Score=33.88  Aligned_cols=64  Identities=11%  Similarity=-0.042  Sum_probs=46.4

Q ss_pred             cccchHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhh-----ccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373          4 GALTLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLP-----HIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus         4 ~~~~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~-----~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +....|+- +..+-+.|+++.|+.-|..+      .+...     ..+.+.++..+|..+...|+++.|+.+|.++
T Consensus         4 sa~dc~~l-G~~~~~~~~y~~A~~W~~~A------l~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a   72 (104)
T 2v5f_A            4 TAEDCFEL-GKVAYTEADYYHTELWMEQA------LRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (104)
T ss_dssp             CHHHHHHH-HHHHHHTTCHHHHHHHHHHH------HHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CHHHHHHH-HHHHHHccchHHHHHHHHHH------HHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            33344443 45555669999999887655      23322     2345788899999999999999999999998

>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}

Probab=94.51  E-value=1.2  Score=38.10  Aligned_cols=121  Identities=10%  Similarity=-0.021  Sum_probs=84.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHH-----------HHHHHHHHhcCHHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYR-----------ESVGAYERAEDYDN   79 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~-----------~A~~~Y~ka~~~~~   79 (198)
                      +-..-+...|+.++|+++-.+.+.|..|.-|+... +++++.+..+.|-+...-.           -..=+=.-+|++..
T Consensus       155 ~~I~~~Ll~G~~e~Av~~al~~~lwa~ALlLAs~~-g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~~~  233 (441)
T 3mzk_B          155 MRVLAFLQTGNHDEALRLALSKRDYAIALLVGSLM-GKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNSKM  233 (441)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHTS-CHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHhCCcHHHHHHHHHhc-CHHHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCHHH
Confidence            34455677899999999999999999998888655 4666666665555532111           11222344688888


Q ss_pred             HHHHHh-------hccCCHHHHHHHHHhcCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         80 VVRVDL-------DHLNDIRHAVDIVKAKKC-------------TEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        80 av~l~~-------~~~~~~~~a~~l~~~~~~-------------~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      +|.-+.       ..+.+|.+.+.++-...+             .+....++..+...|..+.|.-.|.-||.
T Consensus       234 ~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aAhiCYL~a~~  306 (441)
T 3mzk_B          234 AIKSFYTNNETSQWASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAASTLFIIGNV  306 (441)
T ss_dssp             HHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHTTC
T ss_pred             HHHHhccCCccccchHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchhHHhHhccCC
Confidence            887652       024589997776543321             23566899999999999999999999987

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=94.09  E-value=0.11  Score=42.38  Aligned_cols=89  Identities=11%  Similarity=0.051  Sum_probs=57.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHh----------hhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc-----
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQ----------LLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE-----   75 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~----------l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~-----   75 (198)
                      .-+..|.+.|+++.|+.+|.++-....-..          ....+ ...++..+|..+...|+|++|+++|.++-     
T Consensus       184 ~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l-~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~  262 (338)
T 2if4_A          184 MDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAV-KNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEK  262 (338)
T ss_dssp             HHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHH-HTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence            344555667899999988876532211000          00000 11477889999999999999999999873     


Q ss_pred             C---HHHHHHHHhhccCCHHHHHHHHHhc
Q psy12373         76 D---YDNVVRVDLDHLNDIRHAVDIVKAK  101 (198)
Q Consensus        76 ~---~~~av~l~~~~~~~~~~a~~l~~~~  101 (198)
                      +   +...-.++. .+|++++|....++.
T Consensus       263 ~~~a~~~lg~a~~-~~g~~~~A~~~l~~a  290 (338)
T 2if4_A          263 NPKALFRRGKAKA-ELGQMDSARDDFRKA  290 (338)
T ss_dssp             CHHHHHHHHHHHH-TTTCHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHH-HcCCHHHHHHHHHHH
Confidence            2   233344556 789999998887653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=93.55  E-value=0.059  Score=47.10  Aligned_cols=119  Identities=11%  Similarity=0.067  Sum_probs=88.3

Q ss_pred             HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCH---HHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCC
Q psy12373         27 TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSY---RESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC  103 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~---~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~  103 (198)
                      ++|+.-.+++.+...++.-++-+ ...+|+.+|+....   +-|..+|.+.+.|..+|.++. +-+.|.+|+..|..+++
T Consensus       418 ~L~IEEEDy~~LR~SId~ydNFD-~i~LA~rLEkHeL~eFRrIAA~LYkkn~rw~qsi~l~K-kDklykDAietAa~S~~  495 (624)
T 3lvg_A          418 NLFITEEDYQALRTSIDAYDNFD-NISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCK-KDSLYKDAMQYASESKD  495 (624)
T ss_dssp             HHHHHTTCCHHHHHTTSSCCCSC-TTHHHHHHHTCSSHHHHHHHHHHHHTTCHHHHHSSCSS-TTCCTTGGGTTTTTCCC
T ss_pred             HHHhhhhhHHHHHHHHHHhcccc-HHHHHHHHhhCchHHHHHHHHHHHHhcccHHHHHHHHH-hcccHHHHHHHHHHcCC
Confidence            45555555555544444333111 12467777776654   468999999999999999999 88999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHcC---ChHHHHHHHHHcchhh
Q psy12373        104 TEGAKRIADYCNKHGDFGAAIHFLILSK---CYQDAFNLSQQHKKLH  147 (198)
Q Consensus       104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag---~~~~A~~la~~~~~~~  147 (198)
                      ++....+=+||...|..+-=+-..-.+-   +++-+++++-.|+..|
T Consensus       496 ~elaeeLL~yFv~~g~~EcF~a~LytCYdLlrpDvVlElaW~~~l~D  542 (624)
T 3lvg_A          496 TELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLETAWRHNIMD  542 (624)
T ss_dssp             TTHHHHHHHHHHHHCSTHHHHHHHHHTSSSSSCHHHHHHHHHSCSSS
T ss_pred             HHHHHHHHHHHHHcCchHHHHHHHHHHhhccChHHHHHHHHHhcccc
Confidence            9999999999999988775444444444   3788899999998765

>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A

Probab=93.46  E-value=0.71  Score=41.54  Aligned_cols=38  Identities=29%  Similarity=0.317  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD   86 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~   86 (198)
                      .+....|..++..|.+++|+.+|..+|+++.+|++...
T Consensus       444 ~i~~~aA~~ae~~G~~~dAi~LY~La~~~d~vl~lln~  481 (661)
T 2qx5_A          444 TITEQAARRADEDGRIYDSILLYQLAEEYDIVITLVNS  481 (661)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhcCHHHHHHHHHH
Confidence            45556799999999999999999999999999999983

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=93.34  E-value=1  Score=33.29  Aligned_cols=31  Identities=19%  Similarity=0.214  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHh
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDL   85 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~   85 (198)
                      .++..+|..+-..|+|..|...|.++      +....
T Consensus        64 ~~l~~ladalf~~~eyrrA~~~y~qA------Lq~~k   94 (167)
T 3ffl_A           64 QLLVYHADSLFHDKEYRNAVSKYTMA------LQQKK   94 (167)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHH------HHHHH
Confidence            37788999999999999999999997      66665

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=92.79  E-value=0.21  Score=36.67  Aligned_cols=48  Identities=8%  Similarity=0.126  Sum_probs=34.3

Q ss_pred             CChHHHHHHHHHHHHcC-----------CHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHh
Q psy12373         46 KSATTFIQYAKAKEAMG-----------SYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKA  100 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g-----------~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~  100 (198)
                      .....+..+|..+.+.|           ++++|+++|.+|      |++-- ....+.++.+++.+
T Consensus        78 ~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA------l~l~P-~~~~y~~al~~~~k  136 (158)
T 1zu2_A           78 KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA------VDEQP-DNTHYLKSLEMTAK  136 (158)
T ss_dssp             TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH------HHHCT-TCHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH------HHhCC-CCHHHHHHHHHHHh
Confidence            36778889999988774           899999999988      66655 33444555555544

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=92.71  E-value=2.8  Score=34.09  Aligned_cols=24  Identities=13%  Similarity=0.062  Sum_probs=22.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        157 DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       157 ~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.++|+++..+|..|-+.|++.+|
T Consensus       130 ~~Gdp~LH~~~a~~~~~e~~~~~A  153 (312)
T 2wpv_A          130 KFGDPYLHNTIGSKLLEGDFVYEA  153 (312)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHhhcCCHHHH
Confidence            457899999999999999999999

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.13  E-value=2.2  Score=39.94  Aligned_cols=108  Identities=9%  Similarity=0.039  Sum_probs=72.8

Q ss_pred             HHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhc------CC-HHHHH---HHHHHHHhcCC-----HHHHHHHHHH
Q psy12373         65 RESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAK------KC-TEGAK---RIADYCNKHGD-----FGAAIHFLIL  129 (198)
Q Consensus        65 ~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~------~~-~~~~~---~~A~~~~~~g~-----~~~Av~~y~~  129 (198)
                      +.=+....+.|.+..||.+++ ...++|...+++.+.      .+ ...+.   .++.++....+     +.-++++|.+
T Consensus       149 ~~iv~~cl~hnae~~AvdLal-E~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k  227 (963)
T 4ady_A          149 ERMIEKCLKASELKLALGIAL-EGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMN  227 (963)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHH-HTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHH-HHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHh
Confidence            444567778899999999999 679999988888762      11 12221   13333322222     3568999999


Q ss_pred             cC--ChHHHHHHHHHcchhhHHhhhh-hhcCCCCHHHHHHHHHHHHh
Q psy12373        130 SK--CYQDAFNLSQQHKKLHEFGKFL-LEEDEPNPVELKRLAIHFEE  173 (198)
Q Consensus       130 ag--~~~~A~~la~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~e~  173 (198)
                      -.  +|.++++++.+-+..+.+.+++ .+-...++.+..++|=-+.+
T Consensus       228 ~~~~dy~~a~~~ai~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~  274 (963)
T 4ady_A          228 MPNCDYLTLNKVVVNLNDAGLALQLFKKLKEENDEGLSAQIAFDLVS  274 (963)
T ss_dssp             SSSCCHHHHHHHHHHHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CCchhHHHHHHHHHHcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhc
Confidence            88  8999999999998887777775 22224566666666654443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=91.70  E-value=1.7  Score=28.40  Aligned_cols=63  Identities=19%  Similarity=0.048  Sum_probs=44.3

Q ss_pred             CChHHHHHHHHHHHHcCC---HHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHH
Q psy12373         46 KSATTFIQYAKAKEAMGS---YRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGA  122 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~---~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~  122 (198)
                      +++.++..+|..+...++   .++|..++.++      +.+                .-.++.....+|..+...|++++
T Consensus         4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~A------L~~----------------dp~~~rA~~~lg~~~~~~g~y~~   61 (93)
T 3bee_A            4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQA------LQL----------------EPYNEAALSLIANDHFISFRFQE   61 (93)
T ss_dssp             CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHH------HHH----------------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH------HHH----------------CcCCHHHHHHHHHHHHHcCCHHH
Confidence            367778888877764444   57777777766      321                12345666778999999999999


Q ss_pred             HHHHHHHc
Q psy12373        123 AIHFLILS  130 (198)
Q Consensus       123 Av~~y~~a  130 (198)
                      |+..|.+.
T Consensus        62 Ai~~w~~~   69 (93)
T 3bee_A           62 AIDTWVLL   69 (93)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99988764

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=91.68  E-value=5.3  Score=33.50  Aligned_cols=119  Identities=11%  Similarity=0.051  Sum_probs=78.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHH------HHhhhh-------ccC--------------------ChH-----HHH
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTK------IGQLLP-------HIK--------------------SAT-----TFI   52 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~------a~~l~~-------~~~--------------------~~~-----l~~   52 (198)
                      +-+++|.+.|++++..++......|-.      +..+++       .++                    .+.     +-.
T Consensus        24 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~  103 (394)
T 3txn_A           24 QQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEA  103 (394)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999999999999988877652      233322       111                    122     223


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCH--------------HHHHHHHhhccCCHHHHHHHHHh-------c-CCHHHHH--
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDY--------------DNVVRVDLDHLNDIRHAVDIVKA-------K-KCTEGAK--  108 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~--------------~~av~l~~~~~~~~~~a~~l~~~-------~-~~~~~~~--  108 (198)
                      .+|..+...|+|.+|.+++.+.-..              .--++++. .++++.++-.....       . ++|...-  
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~-~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i  182 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYH-ALSNLPKARAALTSARTTANAIYCPPKVQGAL  182 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHH-HhccHHHHHHHHHHHHhhhccCCCCHHHHHHH
Confidence            6788999999999998888776542              23345555 57888877654422       1 3444321  


Q ss_pred             --HHHHHHH-hcCCHHHHHHHHHHc
Q psy12373        109 --RIADYCN-KHGDFGAAIHFLILS  130 (198)
Q Consensus       109 --~~A~~~~-~~g~~~~Av~~y~~a  130 (198)
                        .-|.++. ..++|.+|-..|..+
T Consensus       183 ~~~~Gi~~l~~~rdyk~A~~~F~ea  207 (394)
T 3txn_A          183 DLQSGILHAADERDFKTAFSYFYEA  207 (394)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccCHHHHHHHHHHH
Confidence              2466778 899999998888776

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.31  E-value=5.1  Score=32.55  Aligned_cols=110  Identities=15%  Similarity=0.044  Sum_probs=67.0

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHH-------HHHHhcCH------H
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVG-------AYERAEDY------D   78 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~-------~Y~ka~~~------~   78 (198)
                      .+++|+....+...+.=|.+.++|+.|..         ++..-|..+-+.|++..|.+       .|.+++..      .
T Consensus        26 ~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAid---------lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~   96 (312)
T 2wpv_A           26 AGDYYEAHQTLRTIANRYVRSKSYEHAIE---------LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVA   96 (312)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHTTCHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHH
T ss_pred             ccChHHHHHHHHHHHHHHHHhcCHHHHHH---------HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence            33445554444445555556666776663         44555666666777777655       37777632      4


Q ss_pred             HHHHHHhhccC--------CHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         79 NVVRVDLDHLN--------DIRHAVDIVKA-----KKCTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        79 ~av~l~~~~~~--------~~~~a~~l~~~-----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                      +.+++.. ...        -.++|++-..+     .++|+....+|..|-+.|++.+|..+|+.+.
T Consensus        97 rl~~l~~-~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~  161 (312)
T 2wpv_A           97 RLVRLIA-ELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT  161 (312)
T ss_dssp             HHHHHHT-TCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred             HHHHHHH-HCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC
Confidence            5555544 211        12234443332     2467778889999999999999999999444

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=91.12  E-value=6.1  Score=35.50  Aligned_cols=56  Identities=11%  Similarity=-0.058  Sum_probs=36.5

Q ss_pred             HHHHHHHHcCCHHHHH-HHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         11 GKWTLYESAGNYEKAA-TCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai-~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .++++.+..|+.+.|+ .+|.++      ...+.  .+..+...++...+..|+++.|.+.|.++
T Consensus       348 ~ya~~~~~~~~~~~a~r~il~rA------i~~~P--~s~~Lwl~~a~~ee~~~~~e~aR~iyek~  404 (679)
T 4e6h_A          348 NMANYQGEKNTDSTVITKYLKLG------QQCIP--NSAVLAFSLSEQYELNTKIPEIETTILSC  404 (679)
T ss_dssp             HHHHHHHHHSCCTTHHHHHHHHH------HHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCcHHHHHHHHHHHH------HHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            4455555566655555 554322      22221  25567778899999999999999998887

>3qil_A Clathrin heavy chain 1; clathrin trimerization domain, endocytosis, structural prote; 3.92A {Bos taurus}

Probab=89.97  E-value=0.0073  Score=42.38  Aligned_cols=76  Identities=12%  Similarity=0.047  Sum_probs=60.1

Q ss_pred             HHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC---ChHHHHHHHHHcchhh
Q psy12373         71 YERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK---CYQDAFNLSQQHKKLH  147 (198)
Q Consensus        71 Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag---~~~~A~~la~~~~~~~  147 (198)
                      |.+.+.|..+|.++. .-+.|.+|+..|..+.+++.+..+=+||...|..+-=+-.+-.+-   +++-+++++-.++..|
T Consensus        16 ykkN~rw~qSI~L~K-kDkLykDAietAa~S~d~elaEeLL~yFVe~g~kEcF~A~LytCYdLlrpDvVLElaWr~~l~D   94 (125)
T 3qil_A           16 PRGSHMWKQSVELAK-KDSLYKDAMQYASESKDTELAEELLQWFLQEEKRECFGACLFTCYDLLRPDVVLELAWRHNIMD   94 (125)
T ss_dssp             SSSCCCCSSCCCCCS-CCCCSSHHHHTTTSSCCSHHHHHHHHHHTTSCSHHHHHHHHHHHTTCSCTTHHHHTTSSSSCCC
T ss_pred             hhccccHHHHHHHHH-hcccHHHHHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHHHhccChHHHHHHHHHhcccc
Confidence            566778889999999 889999999999999999999999999999998775444443343   3667777777776644

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.25  E-value=2  Score=36.22  Aligned_cols=81  Identities=15%  Similarity=0.140  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcCH-----------HHHHHHHhhccCCHHHHHHHHHhc-------CCHHHH---
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERAEDY-----------DNVVRVDLDHLNDIRHAVDIVKAK-------KCTEGA---  107 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~-----------~~av~l~~~~~~~~~~a~~l~~~~-------~~~~~~---  107 (198)
                      ..+..+|+++.+.|+++.|.++|.+..++           -..||+++ ..++|..+...+.+.       ++++..   
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l-~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l  210 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGF-FYNDQLYVKEKLEAVNSMIEKGGDWERRNRY  210 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHH-HHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence            34456677777777777777776655533           45567777 567777766555431       222221   


Q ss_pred             -HHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        108 -KRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       108 -~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                       ...|.++...++|..|...|..+
T Consensus       211 k~~~gl~~l~~r~f~~Aa~~f~e~  234 (429)
T 4b4t_R          211 KTYYGIHCLAVRNFKEAAKLLVDS  234 (429)
T ss_dssp             HHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhChHHHHHHHHHHH
Confidence             12355566788999888888753

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.06  E-value=2.6  Score=40.16  Aligned_cols=158  Identities=11%  Similarity=0.091  Sum_probs=90.8

Q ss_pred             HHHHHHcCCHHHHHHHHHHccC-----------HHHHHhhhhc----cCChHHHHHHHHHHHHcCCHHHHHHHHHHh---
Q psy12373         13 WTLYESAGNYEKAATCYIQLKN-----------WTKIGQLLPH----IKSATTFIQYAKAKEAMGSYRESVGAYERA---   74 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~-----------~~~a~~l~~~----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka---   74 (198)
                      ++.|..+|++++|.++|.++-.           ......+...    ...+..+.++...||..|.++.++++-..|   
T Consensus       849 g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~  928 (1139)
T 4fhn_B          849 ALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS  928 (1139)
T ss_dssp             HHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            5678889999999999987621           1111122211    114567788999999999999999887655   


Q ss_pred             ---cC-------HHHHHHHHhhccCCHHHHHHHHHhcCC----HHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHH
Q psy12373         75 ---ED-------YDNVVRVDLDHLNDIRHAVDIVKAKKC----TEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLS  140 (198)
Q Consensus        75 ---~~-------~~~av~l~~~~~~~~~~a~~l~~~~~~----~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la  140 (198)
                         ++       |.+..+.++ .++++++|.......|+    .+-..++-..+.+.|..+.-+.+ --.|..++--++.
T Consensus       929 ~~~~~~~~~~~l~~~iFk~~L-~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~lce~~~~~~L~~l-pf~gl~~~Vd~IL 1006 (1139)
T 4fhn_B          929 KETDDEDLSIAITHETLKTAC-AAGKFDAAHVALMVLSTTPLKKSCLLDFVNQLTKQGKINQLLNY-SMPTLRQDVDNLL 1006 (1139)
T ss_dssp             CCSCCHHHHHHHHHHHHHHHH-HHCCSGGGGHHHHHHHHSSSCHHHHHHHHHHHHHHCCHHHHHHH-TTTSCHHHHHHHH
T ss_pred             ccCCChhhHHHHHHHHHHHHH-hhCCHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCChhhhhCC-CCccHHHHHHHHH
Confidence               12       234456666 67777777655543332    12222222223334444444432 1233333322222


Q ss_pred             HHcchhhHHhhhhhh-cCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        141 QQHKKLHEFGKFLLE-EDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       141 ~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ...-.        +. .....|..|..+-.|...+|+|..|
T Consensus      1007 ~~kAr--------~~~~~~~~p~Yy~iLYs~ri~r~dyR~A 1039 (1139)
T 4fhn_B         1007 ERKAF--------QMINVESQPCWYNILFSWRYKHQNYRDA 1039 (1139)
T ss_dssp             HHHHH--------HHHHHCCSTHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHH--------hCCccccCCCHHHHhHhhhhccCChHHH
Confidence            11100        01 2245678888889999999999888

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=88.32  E-value=5.7  Score=28.74  Aligned_cols=120  Identities=12%  Similarity=0.052  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH---ccCHHH----HHhhhhccC---ChHHHHHHHHHHH--HcCCHHHHHHHHHHhcC
Q psy12373          9 DRGKWTLYESAGNYEKAATCYIQ---LKNWTK----IGQLLPHIK---SATTFIQYAKAKE--AMGSYRESVGAYERAED   76 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai~~y~~---~~~~~~----a~~l~~~~~---~~~l~~~~A~~~e--~~g~~~~A~~~Y~ka~~   76 (198)
                      .-+|-++ .-.|..++-+++..+   +.+...    ...+++.++   --..+..+|+.|.  .-|+...-+.+|.+.|.
T Consensus        11 LmeAK~~-ildG~v~qGveii~k~~~ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C~NlKrVi~C~~~~n~   89 (172)
T 1wy6_A           11 LMDAKKF-LLDGYIDEGVKIVLEITKSSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNT   89 (172)
T ss_dssp             HHHHHHH-HHTTCHHHHHHHHHHHHHHSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTC
T ss_pred             HHHHHHH-HHhhhHHHHHHHHHHHcCCCCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhhhcHHHHHHHHHHhcc
Confidence            3344443 345777777777653   334433    234444443   2233444565543  55788999999999997


Q ss_pred             H----HHHHHHHhhccCCHHHHHHHHHh-----cCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         77 Y----DNVVRVDLDHLNDIRHAVDIVKA-----KKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        77 ~----~~av~l~~~~~~~~~~a~~l~~~-----~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .    +-|++..+ ..|.-|..-++.+.     .++|.....+|..|.+.|+..+|-++..+|
T Consensus        90 ~se~vd~ALd~lv-~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A  151 (172)
T 1wy6_A           90 LNEHVNKALDILV-IQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEA  151 (172)
T ss_dssp             CCHHHHHHHHHHH-HTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHH-HhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence            5    45566666 66888888888776     234777778999999999999998887664

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=87.79  E-value=4.8  Score=36.23  Aligned_cols=133  Identities=6%  Similarity=-0.084  Sum_probs=85.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHH-HHHHHhcC--------HHHHHHHHhhccCCHHHHHHHHHhc---------------C
Q psy12373         47 SATTFIQYAKAKEAMGSYRESV-GAYERAED--------YDNVVRVDLDHLNDIRHAVDIVKAK---------------K  102 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~-~~Y~ka~~--------~~~av~l~~~~~~~~~~a~~l~~~~---------------~  102 (198)
                      .+.+...+|++++..|+.++|. +.|.+|-.        |...+.+.. ..|++++|..+-.+.               |
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee-~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p  420 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYE-LNTKIPEIETTILSCIDRIHLDLAALMEDDP  420 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence            7889999999999999999997 99988742        123344444 678888887665421               2


Q ss_pred             C------------HHHHHHHHHHHHhcCCHHHHHHHHHHcCC---------hHHHHHHHHHcch-hhHHhhhhh--hc-C
Q psy12373        103 C------------TEGAKRIADYCNKHGDFGAAIHFLILSKC---------YQDAFNLSQQHKK-LHEFGKFLL--EE-D  157 (198)
Q Consensus       103 ~------------~~~~~~~A~~~~~~g~~~~Av~~y~~ag~---------~~~A~~la~~~~~-~~~~~~~~~--l~-~  157 (198)
                      .            ...-..++++..+.|+.+.|..+|.+|-.         |.+...|=...+. .+....+..  |. .
T Consensus       421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~  500 (679)
T 4e6h_A          421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF  500 (679)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence            1            11223456666778889999999988732         1222222222222 333333332  32 3


Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        158 EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       158 ~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.++......+.++...|+..+|
T Consensus       501 p~~~~~w~~y~~fe~~~~~~~~A  523 (679)
T 4e6h_A          501 ATDGEYINKYLDFLIYVNEESQV  523 (679)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCchHHHHHHHHHHHhCCCHHHH
Confidence            55788888889988888888888

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=87.63  E-value=5.9  Score=37.15  Aligned_cols=107  Identities=16%  Similarity=0.054  Sum_probs=75.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-c------CChHHHHH---HHHHHH-----HcCCHHHHHHHHHHh
Q psy12373         10 RGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-I------KSATTFIQ---YAKAKE-----AMGSYRESVGAYERA   74 (198)
Q Consensus        10 ~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-~------~~~~l~~~---~A~~~e-----~~g~~~~A~~~Y~ka   74 (198)
                      ++=.....+.|.+..|+.+-+.....+.+.+.+++ +      .-..++..   ++.++-     +..-++.+.+.|.+-
T Consensus       149 ~~iv~~cl~hnae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~~Iy~k~  228 (963)
T 4ady_A          149 ERMIEKCLKASELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSFDFLMNM  228 (963)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHhC
Confidence            34445566789999999999999999988888875 1      11223322   222211     233567799999998


Q ss_pred             c--CHHHHHHHHhhccCCHHHHHHHHHh---cCCHHHHHHHHHHHHhc
Q psy12373         75 E--DYDNVVRVDLDHLNDIRHAVDIVKA---KKCTEGAKRIADYCNKH  117 (198)
Q Consensus        75 ~--~~~~av~l~~~~~~~~~~a~~l~~~---~~~~~~~~~~A~~~~~~  117 (198)
                      .  +|..++++++ ++|+.+.+.++..+   ..+....+++|=-+.+.
T Consensus       229 ~~~dy~~a~~~ai-~LnD~~li~~if~~l~~~~d~l~ayQiAFdL~~~  275 (963)
T 4ady_A          229 PNCDYLTLNKVVV-NLNDAGLALQLFKKLKEENDEGLSAQIAFDLVSS  275 (963)
T ss_dssp             SSCCHHHHHHHHH-HHTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHH-HcCCHHHHHHHHHHHHhcccHHHHHHHHHHHhcc
Confidence            8  9999999999 99999999888877   56676777776665543

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.16  E-value=5.8  Score=32.59  Aligned_cols=24  Identities=8%  Similarity=0.084  Sum_probs=22.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        157 DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       157 ~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.++|+++..+|..|-+.++|.+|
T Consensus       132 ~~Gdp~LH~~ig~~~~~e~~~~~A  155 (336)
T 3lpz_A          132 PAGDPELHHVVGTLYVEEGEFEAA  155 (336)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             CCCCHHHHHHHHHHHHccCCHHHH
Confidence            568899999999999999999999

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=86.61  E-value=3.8  Score=29.64  Aligned_cols=64  Identities=8%  Similarity=0.041  Sum_probs=50.0

Q ss_pred             cCCHHHHHHHHHHcCChHHHHHHH----HHcchhhHHhhhh-h-hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        117 HGDFGAAIHFLILSKCYQDAFNLS----QQHKKLHEFGKFL-L-EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       117 ~g~~~~Av~~y~~ag~~~~A~~la----~~~~~~~~~~~~~-~-l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      =|.....|..|.+.|..++=+.+|    -..++.|.+.++. . +. ...+|+.+.++|..|...|+..+|
T Consensus        74 C~NlKrVi~C~~~~n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a  144 (172)
T 1wy6_A           74 CQNLKSVVECGVINNTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDA  144 (172)
T ss_dssp             CSCTHHHHHHHHHTTCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcHHHHHHHHHHhcchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhH
Confidence            356789999999999966655555    5667777777776 3 34 355699999999999999999888

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=86.52  E-value=3.4  Score=39.25  Aligned_cols=77  Identities=9%  Similarity=0.062  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHccCHHHHHhhhhc---------cCChHHHHHHHHHHHHcCCHHHHHHHHHHhc---------CHHHHHHH
Q psy12373         22 YEKAATCYIQLKNWTKIGQLLPH---------IKSATTFIQYAKAKEAMGSYRESVGAYERAE---------DYDNVVRV   83 (198)
Q Consensus        22 ~~~Ai~~y~~~~~~~~a~~l~~~---------~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~---------~~~~av~l   83 (198)
                      +...|..|++.|++++|..++..         .++.-.+.-+=.-+.+.|.+++|.++|....         .|...|+.
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~g  209 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC  209 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence            56677788888888887777632         2366677777788889999999999998775         26788888


Q ss_pred             HhhccCC-HHHHHHHHH
Q psy12373         84 DLDHLND-IRHAVDIVK   99 (198)
Q Consensus        84 ~~~~~~~-~~~a~~l~~   99 (198)
                      ++ ..|+ +++|.++.+
T Consensus       210 lc-K~G~~~e~A~~Ll~  225 (1134)
T 3spa_A          210 MG-RQDQDAGTIERCLE  225 (1134)
T ss_dssp             HH-HHTCCHHHHHHHHH
T ss_pred             HH-hCCCcHHHHHHHHH
Confidence            88 6676 466766654

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=85.54  E-value=2  Score=27.98  Aligned_cols=30  Identities=7%  Similarity=0.016  Sum_probs=26.7

Q ss_pred             cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         45 IKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        45 ~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      .+++.....+|..+...|+|++|+.+|.+.
T Consensus        40 p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A           40 PYNEAALSLIANDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            347788889999999999999999999986

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=84.01  E-value=4.7  Score=32.57  Aligned_cols=51  Identities=8%  Similarity=-0.106  Sum_probs=33.5

Q ss_pred             HHHHHHHHhc-----CCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHh-CCChhhH
Q psy12373        108 KRIADYCNKH-----GDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEE-DKGVLTS  180 (198)
Q Consensus       108 ~~~A~~~~~~-----g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~-~g~~~~A  180 (198)
                      ..++.+|...     |+.++|.++|.+|                      +.|++..+.......|.++.. .|+++.|
T Consensus       203 ~~LG~lY~~vPp~~gGd~ekA~~~ferA----------------------L~LnP~~~id~~v~YA~~l~~~~gd~~~a  259 (301)
T 3u64_A          203 NVLTKFYAAAPESFGGGMEKAHTAFEHL----------------------TRYCSAHDPDHHITYADALCIPLNNRAGF  259 (301)
T ss_dssp             HHHHHHHHHSCTTTTCCHHHHHHHHHHH----------------------HHHCCTTCSHHHHHHHHHTTTTTTCHHHH
T ss_pred             HHHHHHHHhCCCccCCCHHHHHHHHHHH----------------------HHhCCCCCchHHHHHHHHHHHhcCCHHHH
Confidence            3566666664     6777776665443                      225666667778888888766 4777776

>3mzk_B Protein transport protein SEC16; alpha-helical-stack, beta-propeller; 2.69A {Saccharomyces cerevisiae}

Probab=83.50  E-value=20  Score=30.51  Aligned_cols=114  Identities=11%  Similarity=0.046  Sum_probs=72.9

Q ss_pred             HHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH------H-----HHHHHHHHcCCh
Q psy12373         65 RESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDF------G-----AAIHFLILSKCY  133 (198)
Q Consensus        65 ~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~------~-----~Av~~y~~ag~~  133 (198)
                      ..-+.-+...|+.++||++|+ ..+.|-.|+=|+... .++....+.+.|.+..-.      .     -.+-+-+.+|++
T Consensus       154 ~~~I~~~Ll~G~~e~Av~~al-~~~lwa~ALlLAs~~-g~e~~~~V~~~y~~~~~~~~~~~~~~~~~~Lr~Ly~v~sGn~  231 (441)
T 3mzk_B          154 QMRVLAFLQTGNHDEALRLAL-SKRDYAIALLVGSLM-GKDRWSEVIQKYLYEGFTAGPNDQKELAHFLLLIFQVFVGNS  231 (441)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHH-HTTCHHHHHHHHHTS-CHHHHHHHHHHHHHCC------CTHHHHHHHHHHHHHTTTCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHH-hCCcHHHHHHHHHhc-CHHHHHHHHHHHHHhhcccCCccccccccHHHHHHHHHcCCH
Confidence            445777888999999999999 779999999998654 455555555555442110      0     124455678888


Q ss_pred             HHHHHHHHH--------cchhhHHhh-hhh-hcCCCC---------HHHHHHHHHHHHhCCChhhH
Q psy12373        134 QDAFNLSQQ--------HKKLHEFGK-FLL-EEDEPN---------PVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       134 ~~A~~la~~--------~~~~~~~~~-~~~-l~~~~~---------~~~~~~~A~~~e~~g~~~~A  180 (198)
                      .+++.-+..        ...+..... +++ ...+..         ++.+..++..+.+.|+...|
T Consensus       232 ~~~V~~l~~~~~~~~~~l~~Wre~lA~IlsN~~~~~~~~~~~p~~~~~~l~~LGd~L~~~g~~~aA  297 (441)
T 3mzk_B          232 KMAIKSFYTNNETSQWASENWKSIVAAVLINIPENNEDPLLIPPVVLEFLIEFGIFLTKKGLTAAA  297 (441)
T ss_dssp             HHHHHHHHHCHHHHHHHHHSHHHHHHHHHHTSCCCSSCTTCCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhccCCccccchHhHHHHHHHHHHhCCCCchhhcccccchHHHHHHHHHHHHHhCCCcchh
Confidence            888775421        113322222 211 112111         57889999999999988777

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=82.68  E-value=25  Score=31.14  Aligned_cols=107  Identities=12%  Similarity=0.008  Sum_probs=69.0

Q ss_pred             HHHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH------------------------
Q psy12373         27 TCYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAEDY------------------------   77 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~------------------------   77 (198)
                      +.-.+.++|..+.+.+..++     ...-.+|.|+.++..|+.++|..+|.++-..                        
T Consensus       293 r~Alr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~  372 (618)
T 1qsa_A          293 RMALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAP  372 (618)
T ss_dssp             HHHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCC
T ss_pred             HHHHHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCC
Confidence            34446688888877776543     4567899999999999999999988775421                        


Q ss_pred             ------------HHHHHHHhhccCCHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH
Q psy12373         78 ------------DNVVRVDLDHLNDIRHAVDIVK---AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ  134 (198)
Q Consensus        78 ------------~~av~l~~~~~~~~~~a~~l~~---~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~  134 (198)
                                  ...+..+. .+|..+.|...-.   ...++.....++.+....|.++.+|....+.+.|+
T Consensus       373 ~~~~~~~~~~~~~~r~~~L~-~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~  443 (618)
T 1qsa_A          373 QNVDSALTQGPEMARVRELM-YWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWD  443 (618)
T ss_dssp             SCCCCHHHHSHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTT
T ss_pred             hhHHhhhccChHHHHHHHHH-HCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhc
Confidence                        12233333 4566665543221   22344445566777777777777777777666543

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=81.79  E-value=4.7  Score=32.61  Aligned_cols=63  Identities=14%  Similarity=0.007  Sum_probs=45.8

Q ss_pred             ChHHHHHHHHHHHHc-----CCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCH
Q psy12373         47 SATTFIQYAKAKEAM-----GSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK-HGDF  120 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~-----g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~-~g~~  120 (198)
                      +...+..+|..+...     |+.+.|.++|.++      +++.= . +             +.+....+|+++.. .|+.
T Consensus       198 ~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferA------L~LnP-~-~-------------~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          198 EGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHL------TRYCS-A-H-------------DPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHH------HHHCC-T-T-------------CSHHHHHHHHHTTTTTTCH
T ss_pred             cCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHH------HHhCC-C-C-------------CchHHHHHHHHHHHhcCCH
Confidence            345778889888884     9999999999988      55443 1 1             23445678998876 5889


Q ss_pred             HHHHHHHHHc
Q psy12373        121 GAAIHFLILS  130 (198)
Q Consensus       121 ~~Av~~y~~a  130 (198)
                      +.|..++.++
T Consensus       257 ~~a~~~L~kA  266 (301)
T 3u64_A          257 AGFDEALDRA  266 (301)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888777664

>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A

Probab=81.64  E-value=4.4  Score=25.57  Aligned_cols=49  Identities=14%  Similarity=0.141  Sum_probs=40.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHH
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIA  111 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A  111 (198)
                      .+|..+-..|++++|+.+|.+|      |.+|-    ++.+...+-.++-.+.++..+.
T Consensus        22 ~~GE~L~~~g~~~~~~~hf~nA------l~Vc~----qP~~LL~i~q~tlP~~vf~~Li   70 (73)
T 3ax2_A           22 QLGEELLAQGDYEKGVDHLTNA------IAVCG----QPQQLLQVLQQTLPPPVFQMLL   70 (73)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HHTCS----SCHHHHHHHHHHSCHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH------HHHcC----CHHHHHHHHHhhCCHHHHHHHH
Confidence            5788999999999999999888      87765    6888888888877777766543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	198
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	99.08
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.79
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.67
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.59
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.57
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.52
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	98.44
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.42
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.39
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.3
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.3
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.1
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.04
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.96
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.93
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	97.81
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.77
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.73
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.6
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.57
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.54
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	97.49
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.43
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.42
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.42
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.41
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	97.41
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	97.39
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.39
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	97.39
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	97.29
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.25
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.1
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	96.6
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.54
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.51
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.51
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.45
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	96.37
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	96.2
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	96.05
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	95.86
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	95.65
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.29
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.99
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	94.82
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	94.67
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	94.17
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	94.03
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	93.74
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	93.53
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	92.24
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	91.31
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	90.35
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	89.77
d1om2a_	95	Mitochondrial import receptor subunit Tom20 {Rat (	80.82

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.08  E-value=5e-09  Score=82.81  Aligned_cols=133  Identities=14%  Similarity=0.144  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC----hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHH
Q psy12373          9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS----ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVD   84 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~----~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~   84 (198)
                      |.+|+.+|..+|++++|+++|.++      ..+..+..+    ...+...|..+...|++++|+++|.++      ++++
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA------~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a------~~~~  107 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKA------ADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA------IQIF  107 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHH------HHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh------hHHh
Confidence            444444444555555555555444      333333333    246778899999999999999999888      8888


Q ss_pred             hhccCCHHHHHHHHHhcCCHHHHHHHHHHHHh-cCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHH
Q psy12373         85 LDHLNDIRHAVDIVKAKKCTEGAKRIADYCNK-HGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVE  163 (198)
Q Consensus        85 ~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~-~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~  163 (198)
                      . ..+++..+..+         ...+|..+.. .|++++|+++|.++      +.+....+...           .....
T Consensus       108 ~-~~~~~~~~~~~---------~~~l~~~~~~~~~~~~~A~~~~~~A------~~l~~~~~~~~-----------~~~~~  160 (290)
T d1qqea_         108 T-HRGQFRRGANF---------KFELGEILENDLHDYAKAIDCYELA------GEWYAQDQSVA-----------LSNKC  160 (290)
T ss_dssp             H-HTTCHHHHHHH---------HHHHHHHHHHTTCCHHHHHHHHHHH------HHHHHHTTCHH-----------HHHHH
T ss_pred             h-hcccchhHHHH---------HHHHHHhHhhHHHHHHHHHHHHHHH------HHHHHhcCchh-----------hhhhH
Confidence            8 77887765433         4467777765 58999999888664      44444333221           11245


Q ss_pred             HHHHHHHHHhCCChhhH
Q psy12373        164 LKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       164 ~~~~A~~~e~~g~~~~A  180 (198)
                      +..+|..|...|+|.+|
T Consensus       161 ~~~la~~~~~~g~y~~A  177 (290)
T d1qqea_         161 FIKCADLKALDGQYIEA  177 (290)
T ss_dssp             HHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHcChHHHH
Confidence            67778888888888777

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.79  E-value=4.7e-07  Score=73.47  Aligned_cols=166  Identities=11%  Similarity=0.084  Sum_probs=107.6

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHH-----------------HHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRE-----------------SVG   69 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~-----------------A~~   69 (198)
                      |+|+.|..+|...+++++++.+|++.++|..|.+.+.+..++.++..+...+.......-                 .++
T Consensus        28 ~lye~A~~lY~~~~d~~rl~~~~v~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la~i~~~~~~~~~d~l~~~v~  107 (336)
T d1b89a_          28 KMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELIN  107 (336)
T ss_dssp             -CTTTHHHHHHHTTCHHHHHHHHHTTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHH
T ss_pred             CCHHHHHHHHHhCCCHHHHHHHHHhhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHHHHHHHHhhcCHHHHHHHHH
Confidence            789999999999999999999999999999998888876666666655555544443222                 233


Q ss_pred             HHHHhcCHHHHHHHHhhcc-------------------CCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         70 AYERAEDYDNVVRVDLDHL-------------------NDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        70 ~Y~ka~~~~~av~l~~~~~-------------------~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .|+..|.+...+..+-...                   -+.++.++..+...+.-....+.+.|.+.+-+.++|-+|.+-
T Consensus       108 ~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         108 YYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhccccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence            4444444333333222100                   123333333333222112223456778888899999999999


Q ss_pred             CChHHHHHHHHHcch----hhHHhhhhhhcCCCCHHHHHHHHHHHHhC
Q psy12373        131 KCYQDAFNLSQQHKK----LHEFGKFLLEEDEPNPVELKRLAIHFEED  174 (198)
Q Consensus       131 g~~~~A~~la~~~~~----~~~~~~~~~l~~~~~~~~~~~~A~~~e~~  174 (198)
                      |.|++|+.+.-.|..    .+.|.++  +....+|+.+.++-.+|.+.
T Consensus       188 ~~~~~A~~~~i~~~~~~~~~~~f~e~--~~k~~N~e~~~~~i~~yL~~  233 (336)
T d1b89a_         188 EEYDNAIITMMNHPTDAWKEGQFKDI--ITKVANVELYYRAIQFYLEF  233 (336)
T ss_dssp             TCHHHHHHHHHHSTTTTCCHHHHHHH--HHHCSSTHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcchhhhhHHHHHHH--HHccCChHHHHHHHHHHHHc
Confidence            999999999988853    2344454  34556778888887776653

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=1.2e-06  Score=68.59  Aligned_cols=73  Identities=10%  Similarity=-0.076  Sum_probs=39.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH----HHHHHHcchhhHH----hhhhhhcCCCCHHHHHHHHHHHHhC
Q psy12373        107 AKRIADYCNKHGDFGAAIHFLILSKC----YQDA----FNLSQQHKKLHEF----GKFLLEEDEPNPVELKRLAIHFEED  174 (198)
Q Consensus       107 ~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A----~~la~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~e~~  174 (198)
                      ...+|..+...|++++|+..|.++-.    ..++    -.+....|.++..    ..++.+ .+..+..+..+|..|...
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~lg~~~~~~  253 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALEL-QPGYIRSRYNLGISCINL  253 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHH-hhccHHHHHHHHHHHHHC
Confidence            33456666677777777777665421    1111    1112233333221    222112 345677788888888888


Q ss_pred             CChhhH
Q psy12373        175 KGVLTS  180 (198)
Q Consensus       175 g~~~~A  180 (198)
                      |++++|
T Consensus       254 g~~~~A  259 (323)
T d1fcha_         254 GAHREA  259 (323)
T ss_dssp             TCHHHH
T ss_pred             CCHHHH
Confidence            888777

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=2.1e-06  Score=67.46  Aligned_cols=123  Identities=16%  Similarity=0.137  Sum_probs=74.6

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADY  113 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~  113 (198)
                      +...+..+|..+...|++++|++.|.++...        .....++. ..|++++|....++    .| ++.....+|..
T Consensus       202 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~  280 (388)
T d1w3ba_         202 FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYY-EQGLIDLAIDTYRRAIELQPHFPDAYCNLANA  280 (388)
T ss_dssp             CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHH
T ss_pred             cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5566667777777777777777777665432        22334444 56777777665432    22 24445566777


Q ss_pred             HHhcCCHHHHHHHHHHc---------------------CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHH
Q psy12373        114 CNKHGDFGAAIHFLILS---------------------KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFE  172 (198)
Q Consensus       114 ~~~~g~~~~Av~~y~~a---------------------g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e  172 (198)
                      +...|++++|++.|.++                     |++++|+...         .+++.+ .+..+..+..+|..|.
T Consensus       281 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~---------~~al~~-~p~~~~~~~~la~~~~  350 (388)
T d1w3ba_         281 LKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLY---------RKALEV-FPEFAAAHSNLASVLQ  350 (388)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHH---------HHHTTS-CTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHH---------HHHHHh-CCCCHHHHHHHHHHHH
Confidence            77777777776665443                     3333333333         222112 2456888899999999


Q ss_pred             hCCChhhH
Q psy12373        173 EDKGVLTS  180 (198)
Q Consensus       173 ~~g~~~~A  180 (198)
                      ..|++++|
T Consensus       351 ~~g~~~~A  358 (388)
T d1w3ba_         351 QQGKLQEA  358 (388)
T ss_dssp             TTTCCHHH
T ss_pred             HcCCHHHH
Confidence            99999888

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.57  E-value=8.2e-07  Score=71.97  Aligned_cols=147  Identities=12%  Similarity=0.125  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCC-----------
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGD-----------  119 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~-----------  119 (198)
                      ....|..|++.|.|+.|..+|...+++.+++.+++ ++++++.|+.++++..++.....+...+.+..+           
T Consensus        17 ~~~i~~~c~~~~lye~A~~lY~~~~d~~rl~~~~v-~l~~~~~avd~~~k~~~~~~~k~~~~~l~~~~e~~la~i~~~~~   95 (336)
T d1b89a_          17 IQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLV-HLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHI   95 (336)
T ss_dssp             ------------CTTTHHHHHHHTTCHHHHHHHHH-TTTCHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHTTTTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHhCCCHHHHHHHHH-hhccHHHHHHHHHHcCCHHHHHHHHHHHHhCcHHHHHHHHHHHh
Confidence            34689999999999999999999999999999999 999999999999999998887766666543332           


Q ss_pred             ------HHHHHHHHHHcCChHHHHHHHHHc-----chhhHHhhhhhh-cCC------------CCHHHHHHHHHHHHhCC
Q psy12373        120 ------FGAAIHFLILSKCYQDAFNLSQQH-----KKLHEFGKFLLE-EDE------------PNPVELKRLAIHFEEDK  175 (198)
Q Consensus       120 ------~~~Av~~y~~ag~~~~A~~la~~~-----~~~~~~~~~~~l-~~~------------~~~~~~~~~A~~~e~~g  175 (198)
                            ....|+.|...|.+++.+.+....     .....+.+++.+ .+-            ++.-..-++...+++.+
T Consensus        96 ~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~~kl~e~l~~~s~~y~~~k~~~~c~~~~  175 (336)
T d1b89a_          96 VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAH  175 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTT
T ss_pred             hcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhChHHHHHHHHhccccCCHHHHHHHHHHcC
Confidence                  246789999999999988887632     122233333211 111            11111122445667777


Q ss_pred             ChhhH----HhcCChhhHHhhhhhcCC
Q psy12373        176 GVLTS----FRVSQQSRAMPCSSGHHP  198 (198)
Q Consensus       176 ~~~~A----~~ag~~~~Al~l~~~~~~  198 (198)
                      -|+++    .+-|.+++|+.+..+|-|
T Consensus       176 l~~elv~Ly~~~~~~~~A~~~~i~~~~  202 (336)
T d1b89a_         176 LWAELVFLYDKYEEYDNAIITMMNHPT  202 (336)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHSTT
T ss_pred             ChHHHHHHHHhcCCHHHHHHHHHHcch
Confidence            77777    788888888888888754

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=1.3e-06  Score=64.91  Aligned_cols=132  Identities=9%  Similarity=0.015  Sum_probs=88.5

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD   86 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~   86 (198)
                      .+|.+ +-.+...|+++.|++.|.+..           .+++.++..+|..+...|++++|+++|.++      |++-- 
T Consensus         7 ~l~~~-g~~~~~~~d~~~Al~~~~~i~-----------~~~~~~~~nlG~~~~~~g~~~~A~~~~~kA------l~ldp-   67 (192)
T d1hh8a_           7 SLWNE-GVLAADKKDWKGALDAFSAVQ-----------DPHSRICFNIGCMYTILKNMTEAEKAFTRS------INRDK-   67 (192)
T ss_dssp             HHHHH-HHHHHHTTCHHHHHHHHHTSS-----------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT-
T ss_pred             HHHHH-HHHHHHCCCHHHHHHHHHhcC-----------CCCHHHHHHHHHHHHHcCCchhHHHHHHHH------HHHhh-
Confidence            34555 333445577777777774321           135678889999999999999999999998      54322 


Q ss_pred             ccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhc-CCCCHHHHH
Q psy12373         87 HLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEE-DEPNPVELK  165 (198)
Q Consensus        87 ~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~-~~~~~~~~~  165 (198)
                                     ..+.....+|..+...|++++|+..|.+|      +.....++..+. ..+ .+. .....+++.
T Consensus        68 ---------------~~~~a~~~~g~~~~~~g~~~~A~~~~~kA------l~~~~~n~~~~~-~~~-~~~~~~~~~e~~~  124 (192)
T d1hh8a_          68 ---------------HLAVAYFQRGMLYYQTEKYDLAIKDLKEA------LIQLRGNQLIDY-KIL-GLQFKLFACEVLY  124 (192)
T ss_dssp             ---------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHTTTTCSEEEC-GGG-TBCCEEEHHHHHH
T ss_pred             ---------------hhhhhHHHHHHHHHhhccHHHHHHHHHHH------HHhCccCchHHH-HHh-hhhcccchHHHHH
Confidence                           23455667899999999999999988655      333222221110 110 011 123367889


Q ss_pred             HHHHHHHhCCChhhH
Q psy12373        166 RLAIHFEEDKGVLTS  180 (198)
Q Consensus       166 ~~A~~~e~~g~~~~A  180 (198)
                      .+|..+...|++++|
T Consensus       125 n~a~~~~~~~~~~~A  139 (192)
T d1hh8a_         125 NIAFMYAKKEEWKKA  139 (192)
T ss_dssp             HHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHCCCHHHH
Confidence            999999999999999

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=4.7e-06  Score=65.31  Aligned_cols=168  Identities=14%  Similarity=0.079  Sum_probs=108.1

Q ss_pred             chHHHHHHHHHHc-----CC---HHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESA-----GN---YEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~-----g~---~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      +.+++|...+.++     ++   +.....+|...++++++.....+     ......+..+|..+...|++++|+++|.+
T Consensus       183 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  262 (388)
T d1w3ba_         183 GEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRR  262 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            5566666666543     11   22334556666666665554432     23667778889999999999999999988


Q ss_pred             hc-----C---HHHHHHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHcCC----hHHH
Q psy12373         74 AE-----D---YDNVVRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILSKC----YQDA  136 (198)
Q Consensus        74 a~-----~---~~~av~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~----~~~A  136 (198)
                      +-     +   +.....++. ..|++++|....+.    .| .+.....++..+...|++++|+++|.++=.    ...+
T Consensus       263 al~~~p~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~  341 (388)
T d1w3ba_         263 AIELQPHFPDAYCNLANALK-EKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAA  341 (388)
T ss_dssp             HHHTCSSCHHHHHHHHHHHH-HHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence            73     1   233455666 77999998876643    22 344555788889999999999999988643    2222


Q ss_pred             -H---HHHHHcchhhHH----hhhhhhcCCCCHHHHHHHHHHHHhCCC
Q psy12373        137 -F---NLSQQHKKLHEF----GKFLLEEDEPNPVELKRLAIHFEEDKG  176 (198)
Q Consensus       137 -~---~la~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~e~~g~  176 (198)
                       +   .+....|.++..    .+++.+ .+..++.+..+|..|.+.|+
T Consensus       342 ~~~la~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         342 HSNLASVLQQQGKLQEALMHYKEAIRI-SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHTTTCCHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCC
Confidence             2   223344544332    333222 34568999999999988775

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.42  E-value=4.3e-06  Score=65.37  Aligned_cols=94  Identities=16%  Similarity=0.093  Sum_probs=63.3

Q ss_pred             HHHHHHHHHccCHHHHHhhhh-------ccC----ChHHHHHHHHHHHH-cCCHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         23 EKAATCYIQLKNWTKIGQLLP-------HIK----SATTFIQYAKAKEA-MGSYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        23 ~~Ai~~y~~~~~~~~a~~l~~-------~~~----~~~l~~~~A~~~e~-~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      ..+..+|.+.++++.|.....       ...    ....+..+|..++. .|++++|+++|.++      +.++. ..++
T Consensus        81 ~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A------~~l~~-~~~~  153 (290)
T d1qqea_          81 VEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELA------GEWYA-QDQS  153 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH------HHHHH-HTTC
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHH------HHHHH-hcCc
Confidence            455666667777777654443       222    24566677888876 59999999998887      66666 4455


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      +..+..         ....+|..+...|++++|++.|.++..
T Consensus       154 ~~~~~~---------~~~~la~~~~~~g~y~~A~~~~~~~~~  186 (290)
T d1qqea_         154 VALSNK---------CFIKCADLKALDGQYIEASDIYSKLIK  186 (290)
T ss_dssp             HHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             hhhhhh---------HHHHHHHHHHHcChHHHHHHHHHHHHH
Confidence            443322         244678888888999999988876543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=5.6e-06  Score=57.14  Aligned_cols=99  Identities=21%  Similarity=0.240  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhcc
Q psy12373          9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHL   88 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~   88 (198)
                      +.+-+..|-+.|++++|+++|.++-      ++  ..++..++..+|..+...|+|++|++.|.++      |.+--...
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al------~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------l~l~~~~~   72 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAK------EL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKA------IEVGRENR   72 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH------HH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHHHST
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH------Hh--CcccHHHHHhHHHHHHHcCchHHHHHHHHHH------HHhCcccH
Confidence            4556677888899999999997753      22  3347788999999999999999999999998      77766333


Q ss_pred             CCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         89 NDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        89 ~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ..|...   +      .....+|..+...+++++|+++|.++
T Consensus        73 ~~~~~~---a------~~~~~lg~~~~~~~~~~~A~~~~~ka  105 (128)
T d1elra_          73 EDYRQI---A------KAYARIGNSYFKEEKYKDAIHFYNKS  105 (128)
T ss_dssp             TCHHHH---H------HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHH---H------HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            333321   1      12446788899999999999988654

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=2.4e-05  Score=60.84  Aligned_cols=103  Identities=10%  Similarity=-0.095  Sum_probs=69.5

Q ss_pred             HHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhc--------------------------
Q psy12373         27 TCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAE--------------------------   75 (198)
Q Consensus        27 ~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~--------------------------   75 (198)
                      .+|...|+|+.|.....+     ..+...+..+|..+...|++++|+++|.++-                          
T Consensus        61 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  140 (323)
T d1fcha_          61 TTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSK  140 (323)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------
T ss_pred             HHHHHcCChHHHHHHHHhhhccccccccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccch
Confidence            344455666665544432     2367788888999999999999988887642                          


Q ss_pred             ----------CHH-------HH----------------HHHHhhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhc
Q psy12373         76 ----------DYD-------NV----------------VRVDLDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKH  117 (198)
Q Consensus        76 ----------~~~-------~a----------------v~l~~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~  117 (198)
                                .+.       ++                ..++. ..|++++|....++    .| ++.....+|..+...
T Consensus       141 ~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  219 (323)
T d1fcha_         141 RILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFN-LSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANG  219 (323)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHH-HHHHHhhhhcccccccccccccccchhhhhhccccc
Confidence                      111       11                12333 57888888776553    23 355566789999999


Q ss_pred             CCHHHHHHHHHHc
Q psy12373        118 GDFGAAIHFLILS  130 (198)
Q Consensus       118 g~~~~Av~~y~~a  130 (198)
                      |++++|++.|.++
T Consensus       220 g~~~~A~~~~~~a  232 (323)
T d1fcha_         220 NQSEEAVAAYRRA  232 (323)
T ss_dssp             TCHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHH
Confidence            9999999998875

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=9.7e-06  Score=54.99  Aligned_cols=95  Identities=17%  Similarity=0.106  Sum_probs=72.1

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhc
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDH   87 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~   87 (198)
                      .+.+=+..+.+.|++++|+.+|.++-      .  ....++.++..+|..+...|++++|+..|.++      +++--  
T Consensus         5 ~l~~~g~~~~~~g~~~eAi~~~~~al------~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~a------l~~~p--   68 (117)
T d1elwa_           5 ELKEKGNKALSVGNIDDALQCYSEAI------K--LDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT------VDLKP--   68 (117)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH------H--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHCT--
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH------h--cCCcchhhhhcccccccccccccccchhhhhH------HHhcc--
Confidence            34555677777799999999886651      1  13457889999999999999999999999988      54432  


Q ss_pred             cCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373         88 LNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus        88 ~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                                    .++.....+|..+...|++++|+..|.++=.
T Consensus        69 --------------~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~   99 (117)
T d1elwa_          69 --------------DWGKGYSRKAAALEFLNRFEEAKRTYEEGLK   99 (117)
T ss_dssp             --------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             --------------chhhHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence                          2344566788899999999999888876643

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=1.8e-05  Score=57.43  Aligned_cols=92  Identities=15%  Similarity=0.096  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhcc
Q psy12373          9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHL   88 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~   88 (198)
                      +.+-+..|-+.|+++.|+..|.++      ..+  ...++.++..+|..+...|++++|+++|.++      |.+--   
T Consensus         7 l~~~Gn~~~~~g~~~~Ai~~~~ka------l~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~a------l~l~p---   69 (201)
T d2c2la1           7 LKEQGNRLFVGRKYPEAAACYGRA------ITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRA------LELDG---   69 (201)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH------TTSCT---
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHH------HHhCC---
Confidence            455677888889999999998764      222  3357889999999999999999999999987      32211   


Q ss_pred             CCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         89 NDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        89 ~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                                   ..+.....+|..+...|++++|+..|.++
T Consensus        70 -------------~~~~a~~~lg~~~~~l~~~~~A~~~~~~a   98 (201)
T d2c2la1          70 -------------QSVKAHFFLGQCQLEMESYDEAIANLQRA   98 (201)
T ss_dssp             -------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -------------CcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence                         12344567889999999999999888765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.2e-05  Score=54.84  Aligned_cols=88  Identities=26%  Similarity=0.219  Sum_probs=60.6

Q ss_pred             HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHH
Q psy12373         14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRH   93 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~   93 (198)
                      ..|-+.|++++|+.+|.++      ..+  ..+++..+..+|..+...|++++|+++|.++      |++--        
T Consensus        18 n~~~~~~~y~~A~~~~~~a------l~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~ka------l~~~p--------   75 (159)
T d1a17a_          18 NDYFKAKDYENAIKFYSQA------IEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRA------IELDK--------   75 (159)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT--------
T ss_pred             HHHHHcCCHHHHHHHhhhc------ccc--chhhhhhhhhhHHHHHhccccchHHHHHHHH------HHHcc--------
Confidence            3445556666666666433      222  3347889999999999999999999999998      43322        


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         94 AVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        94 a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                              .+..+...+|..+...|++++|+..|.++-
T Consensus        76 --------~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~  105 (159)
T d1a17a_          76 --------KYIKGYYRRAASNMALGKFRAALRDYETVV  105 (159)
T ss_dssp             --------TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             --------cchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                    123445567777777888887777666653

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.96  E-value=8.5e-05  Score=52.51  Aligned_cols=99  Identities=14%  Similarity=0.048  Sum_probs=67.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC----------ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK----------SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVR   82 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~----------~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~   82 (198)
                      +..+.+.|+++.||..|.++      .++....+          ....+..+|..+...|++++|++.|.++      ++
T Consensus        16 g~~~~~~g~y~~Ai~~y~~A------l~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~a------l~   83 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRA------MEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKA------LH   83 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHH------HHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH------HH
T ss_pred             HHHHHHcCCHHHHHHHHHHH------HHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhh------hh
Confidence            44556679999999998776      44444333          1346778899999999999999999888      77


Q ss_pred             HHhhccCCHH--HHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         83 VDLDHLNDIR--HAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        83 l~~~~~~~~~--~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ++- ......  .....      ......+|..|...|++++|++.|.+|
T Consensus        84 ~~~-~~~~~~~~~~~~~------~~a~~~~g~~~~~lg~~eeA~~~~~~A  126 (156)
T d2hr2a1          84 YFN-RRGELNQDEGKLW------ISAVYSRALALDGLGRGAEAMPEFKKV  126 (156)
T ss_dssp             HHH-HHCCTTSTHHHHH------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccc-ccccccccccchh------HHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            776 222211  01111      112446788999999999999986554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.93  E-value=7.3e-05  Score=50.05  Aligned_cols=88  Identities=14%  Similarity=-0.003  Sum_probs=67.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCH
Q psy12373         12 KWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDI   91 (198)
Q Consensus        12 Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~   91 (198)
                      .+..|.+.|++++|+.+|.++      .++  ...++..+..+|..+...|++++|+.+|.++      +++--      
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~a------l~~--~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a------l~~~p------   81 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAV------CQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHA------RMLDP------   81 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH------HHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCT------
T ss_pred             HHHHHHHHhhhHHHHHHHhhh------ccc--ccccchhhhhhhhhhhhhhhHHHhhcccccc------ccccc------
Confidence            466677789999999888554      222  3347889999999999999999999999987      44321      


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         92 RHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus        92 ~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                                ..+.....+|..+...|++++|++.+.+
T Consensus        82 ----------~~~~a~~~la~~y~~~g~~~~A~~~l~~  109 (112)
T d1hxia_          82 ----------KDIAVHAALAVSHTNEHNANAALASLRA  109 (112)
T ss_dssp             ----------TCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----------ccccchHHHHHHHHHCCCHHHHHHHHHH
Confidence                      1345566789999999999999988875

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=0.00022  Score=51.31  Aligned_cols=89  Identities=15%  Similarity=-0.087  Sum_probs=68.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      +.+-+...|..+...|+|++|+++|.++      |.+--                .++.....+|..|.+.|++++|+..
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~ka------l~~~p----------------~~~~~~~~lg~~y~~~~~~~~Ai~~   60 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRA------ITRNP----------------LVAVYYTNRALCYLKMQQPEQALAD   60 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHCS----------------CCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHhCC----------------CCHHHHHhHHHHHhhhhhhhhhhHH
Confidence            4455678899999999999999999997      54421                2344555788889999999999888


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.+|=.                      + .+..+..+..+|..|...|+|++|
T Consensus        61 ~~~al~----------------------l-~p~~~~a~~~lg~~~~~l~~~~~A   91 (201)
T d2c2la1          61 CRRALE----------------------L-DGQSVKAHFFLGQCQLEMESYDEA   91 (201)
T ss_dssp             HHHHTT----------------------S-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHH----------------------h-CCCcHHHHHHHHHHHHHCCCHHHH
Confidence            866533                      2 234678899999999999999998

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.77  E-value=0.00017  Score=53.92  Aligned_cols=159  Identities=13%  Similarity=-0.050  Sum_probs=87.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVD   84 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~   84 (198)
                      +..|.+.|++++|++.|.++      .++  ..+++..+..+|..+...|++++|+++|.++-..        ...-.++
T Consensus        44 G~~y~~~g~~~~A~~~~~~a------l~l--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQA------LAI--RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------HHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHh------hcc--CCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHH
Confidence            44556666666666666544      222  3457888999999999999999999999998643        2333455


Q ss_pred             hhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHH---HHHcCChHHHHHHHHH-cc---hhhHHhhh
Q psy12373         85 LDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHF---LILSKCYQDAFNLSQQ-HK---KLHEFGKF  152 (198)
Q Consensus        85 ~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~---y~~ag~~~~A~~la~~-~~---~~~~~~~~  152 (198)
                      . .+|++++|....++    .| ++.....++......+..+.+..+   +.......-...+... .+   .......+
T Consensus       116 ~-~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (259)
T d1xnfa_         116 Y-YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERL  194 (259)
T ss_dssp             H-HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCSTHHHHHHHHTTSSCHHHHHHHH
T ss_pred             H-HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            5 67889888766543    22 222223334334444443333222   2222221111111111 11   01111111


Q ss_pred             hh-----hc-CCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        153 LL-----EE-DEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       153 ~~-----l~-~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..     +. .+..++.+..+|..+...|++++|
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A  228 (259)
T d1xnfa_         195 KADATDNTSLAEHLSETNFYLGKYYLSLGDLDSA  228 (259)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHH
Confidence            10     01 123356778899999999999999

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.73  E-value=0.00085  Score=51.06  Aligned_cols=95  Identities=11%  Similarity=-0.049  Sum_probs=59.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCC---hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccC
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKS---ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLN   89 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~---~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~   89 (198)
                      ++++...|++++|+++|.++      ..+....+.   ...+..+|..+...|++++|+..|.++      +++.. ..+
T Consensus        19 A~~~~~~g~~~~A~~~~~~a------L~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a------~~~~~-~~~   85 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLA------LEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQT------EQMAR-QHD   85 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------HHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH------HHHHH-HTT
T ss_pred             HHHHHHCCCHHHHHHHHHHH------HhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHH-hhc
Confidence            56777888888888887543      222222111   235667899999999999999999887      66655 334


Q ss_pred             CHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         90 DIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus        90 ~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                      +......         ....++..+...|++..|+..|.+
T Consensus        86 ~~~~~~~---------~~~~~~~~~~~~~~~~~a~~~~~~  116 (366)
T d1hz4a_          86 VWHYALW---------SLIQQSEILFAQGFLQTAWETQEK  116 (366)
T ss_dssp             CHHHHHH---------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             chHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3332211         122445556666666666665554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.60  E-value=0.00028  Score=50.29  Aligned_cols=102  Identities=14%  Similarity=0.146  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhh----h--cc--CChHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHH
Q psy12373          8 LDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLL----P--HI--KSATTFIQYAKAKEAMGSYRESVGAYERAEDYDN   79 (198)
Q Consensus         8 ~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~----~--~~--~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~   79 (198)
                      .+.+-+..|-..|+++.|++.|.++-.+.......    .  .+  ....++..+|..+...|+|++|+..|.++     
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~a-----  103 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA-----  103 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhh-----
Confidence            35566677778899999999997664332211111    0  11  13445666788888888888888888887     


Q ss_pred             HHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         80 VVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        80 av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                       |++-                -..+.....+|..+...|++++|++.|.++-
T Consensus       104 -l~~~----------------p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al  138 (169)
T d1ihga1         104 -LEID----------------PSNTKALYRRAQGWQGLKEYDQALADLKKAQ  138 (169)
T ss_dssp             -HTTC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -hhhh----------------hhhhhHHHhHHHHHHHccCHHHHHHHHHHHH
Confidence             3221                1234556678888999999999988877653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.57  E-value=0.0004  Score=46.53  Aligned_cols=85  Identities=13%  Similarity=0.048  Sum_probs=61.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +..-|..+...|+|++|+.+|.++      |...-                .++.....+|..+...|++++|+..|.++
T Consensus         6 l~~~g~~~~~~g~~~eAi~~~~~a------l~~~p----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   63 (117)
T d1elwa_           6 LKEKGNKALSVGNIDDALQCYSEA------IKLDP----------------HNHVLYSNRSAAYAKKGDYQKAYEDGCKT   63 (117)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HhcCC----------------cchhhhhcccccccccccccccchhhhhH
Confidence            345788888999999999999887      43221                23444556788778778888777766543


Q ss_pred             CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      =.                      + .+..+..+..+|..|...|++++|
T Consensus        64 l~----------------------~-~p~~~~~~~~~g~~~~~~~~~~~A   90 (117)
T d1elwa_          64 VD----------------------L-KPDWGKGYSRKAAALEFLNRFEEA   90 (117)
T ss_dssp             HH----------------------H-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HH----------------------h-ccchhhHHHHHHHHHHHccCHHHH
Confidence            11                      2 345788899999999999999888

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00022  Score=51.10  Aligned_cols=26  Identities=15%  Similarity=0.261  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         49 TTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        49 ~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ..+...|..+...|+|++|+++|.++
T Consensus        14 ~~l~~~G~~~~~~~~~~~Ai~~y~~a   39 (170)
T d1p5qa1          14 TIVKERGTVYFKEGKYKQALLQYKKI   39 (170)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45557788999999999999999887

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.0012  Score=47.17  Aligned_cols=94  Identities=16%  Similarity=0.218  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---C----------hHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373          9 DRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---S----------ATTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus         9 ~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~----------~~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      +.+-+..|-+.|+++.|+++|.++      .++.....   +          ..++..+|..+...|+|++|+.+|.++ 
T Consensus        16 l~~~G~~~~~~~~~~~Ai~~y~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~a-   88 (170)
T d1p5qa1          16 VKERGTVYFKEGKYKQALLQYKKI------VSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA-   88 (170)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHH------HHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhh-
Confidence            334455666789999999998755      33333211   1          123334555555555555555555554 


Q ss_pred             CHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         76 DYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        76 ~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                           |++-                -.++.....+|..+...|++++|+..|.++
T Consensus        89 -----l~~~----------------p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a  122 (170)
T d1p5qa1          89 -----LELD----------------SNNEKGLSRRGEAHLAVNDFELARADFQKV  122 (170)
T ss_dssp             -----HHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             -----hhcc----------------ccchhhhHHHHHHHHHhhhHHHHHHHHHHH
Confidence                 3221                124556678899999999999999998875

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.0048  Score=46.62  Aligned_cols=101  Identities=12%  Similarity=0.098  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLIL  129 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~  129 (198)
                      ....+|..+...|++++|+++|.++      +.+.. ..+.....         ......+|..+...|++++|++.|. 
T Consensus       253 ~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~-~~~~~~~~---------~~~~~~la~~~~~~g~~~~A~~~l~-  315 (366)
T d1hz4a_         253 QWRNIARAQILLGEFEPAEIVLEEL------NENAR-SLRLMSDL---------NRNLLLLNQLYWQAGRKSDAQRVLL-  315 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-HTTCHHHH---------HHHHHHHHHHHHHHTCHHHHHHHHH-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH------HHHHh-hcccChHH---------HHHHHHHHHHHHHCCCHHHHHHHHH-
Confidence            3445677777777777777776665      44444 22222111         1224467899999999999999986 


Q ss_pred             cCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        130 SKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       130 ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                           +|++++.+.+....+..        .++.+..+...+.+.+..+++
T Consensus       316 -----~Al~l~~~~~~~~~~~~--------~~~~~~~~~~~l~~~~~l~e~  353 (366)
T d1hz4a_         316 -----DALKLANRTGFISHFVI--------EGEAMAQQLRQLIQLNTLPEL  353 (366)
T ss_dssp             -----HHHHHHHHHCCCHHHHT--------THHHHHHHHHHHHHTTCSCHH
T ss_pred             -----HHHHHhhhcCcHHHHHH--------HHHHHHHHHHHHHhcCCChHH
Confidence                 46788877665422221        234444555556666666665

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.43  E-value=0.00064  Score=48.37  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ...+...|..+-..|+|.+|+..|.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~a   41 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKI   41 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            356678899999999999999999886

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.42  E-value=0.0018  Score=45.85  Aligned_cols=96  Identities=19%  Similarity=0.203  Sum_probs=64.3

Q ss_pred             chHHHHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC-------------ChHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy12373          7 TLDRGKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK-------------SATTFIQYAKAKEAMGSYRESVGAYER   73 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~-------------~~~l~~~~A~~~e~~g~~~~A~~~Y~k   73 (198)
                      ..+.+-+..+-+.|+++.|++.|.++      ..++....             ...++..+|..+...|++.+|+++|.+
T Consensus        16 ~~~~e~G~~~~~~~~~~~A~~~Y~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~   89 (168)
T d1kt1a1          16 AIVKEKGTVYFKGGKYVQAVIQYGKI------VSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDK   89 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhh
Confidence            34566677777889999999998654      33332111             123455567777777777777777777


Q ss_pred             hcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         74 AEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        74 a~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +      +++.                ..+.......|..+...|++++|++.|.++
T Consensus        90 a------l~l~----------------p~~~~a~~~~~~~~~~l~~~~~A~~~~~~a  124 (168)
T d1kt1a1          90 A------LGLD----------------SANEKGLYRRGEAQLLMNEFESAKGDFEKV  124 (168)
T ss_dssp             H------HHHC----------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             h------hhcc----------------cchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5      3321                123455667888999999999999888764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.42  E-value=0.00046  Score=45.87  Aligned_cols=85  Identities=13%  Similarity=0.050  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ....|..+...|++++|+.+|.++      |+..=                .++.....+|..+...|++++|+..|.++
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~a------l~~~p----------------~~~~a~~~lg~~~~~~~~~~~A~~~~~~a   76 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAV------CQKEP----------------EREEAWRSLGLTQAENEKDGLAIIALNHA   76 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhh------ccccc----------------ccchhhhhhhhhhhhhhhHHHhhcccccc
Confidence            457788999999999999988887      43321                13555667899999999999999888653


Q ss_pred             CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                            ++                + .+..++.+..+|..|...|++.+|
T Consensus        77 ------l~----------------~-~p~~~~a~~~la~~y~~~g~~~~A  103 (112)
T d1hxia_          77 ------RM----------------L-DPKDIAVHAALAVSHTNEHNANAA  103 (112)
T ss_dssp             ------HH----------------H-CTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ------cc----------------c-ccccccchHHHHHHHHHCCCHHHH
Confidence                  11                2 245688999999999888888777

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.0019  Score=43.69  Aligned_cols=92  Identities=8%  Similarity=0.123  Sum_probs=61.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +...|..+...|+|++|+++|.++      +++.-                .++.....+|..+...|++++|++.|.++
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~a------l~~~p----------------~~~~~~~~~a~~~~~~~~~~~A~~~~~~a   64 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKA------KELDP----------------TNMTYITNQAAVYFEKGDYNKCRELCEKA   64 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHHCT----------------TCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH------HHhCc----------------ccHHHHHhHHHHHHHcCchHHHHHHHHHH
Confidence            446899999999999999999998      54422                12344556788888888888888877654


Q ss_pred             CChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        131 KCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       131 g~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                            +.+-..+...  ..        .....+..++..++..+++.+|
T Consensus        65 ------l~l~~~~~~~--~~--------~~a~~~~~lg~~~~~~~~~~~A   98 (128)
T d1elra_          65 ------IEVGRENRED--YR--------QIAKAYARIGNSYFKEEKYKDA   98 (128)
T ss_dssp             ------HHHHHHSTTC--HH--------HHHHHHHHHHHHHHHTTCHHHH
T ss_pred             ------HHhCcccHHH--HH--------HHHHHHHHHHHHHHHhCCHHHH
Confidence                  3333332211  00        0124666777788888888777

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.0001  Score=54.06  Aligned_cols=118  Identities=15%  Similarity=0.059  Sum_probs=78.3

Q ss_pred             cchHHHHHHHHHHcCCHH-----HHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373          6 LTLDRGKWTLYESAGNYE-----KAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus         6 ~~~~~~Aa~~y~~~g~~~-----~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      .++|+.|.+.|.+..++.     ..-.+|...|+++.|.+...+     ...+..+..+|..+...|++++|++.|.++ 
T Consensus        18 ~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kA-   96 (192)
T d1hh8a_          18 KKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEA-   96 (192)
T ss_dssp             TTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH-
T ss_pred             CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHH-
Confidence            377888888888765432     334566777888877666643     337788899999999999999999999887 


Q ss_pred             CHHHHHHHHhhccCCHHHHHHHH--HhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         76 DYDNVVRVDLDHLNDIRHAVDIV--KAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        76 ~~~~av~l~~~~~~~~~~a~~l~--~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                           +.... . +.+-.-..+.  ......+....+|..+...|++++|++.|.+|-
T Consensus        97 -----l~~~~-~-n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~  147 (192)
T d1hh8a_          97 -----LIQLR-G-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALAT  147 (192)
T ss_dssp             -----HHTTT-T-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             -----HHhCc-c-CchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence                 54322 1 1100000000  001112345578888899999999999887764

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=0.00044  Score=44.68  Aligned_cols=67  Identities=13%  Similarity=-0.016  Sum_probs=50.4

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCC-HHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKC-TEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~-~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      .+-+..+|..+-..|+|.+|+..|.+|      +++.- .....         .++ .+....+|..+.+.|++++|+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~A------l~~~~-~~~~~---------~~~~~~~l~~Lg~~~~~~g~~~~A~~~   68 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQA------LRQLD-EGEIS---------TIDKVSVLDYLSYAVYQQGDLDKALLL   68 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH------HHHHH-TTCCC---------SSCHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHH------HHHHh-hhhcc---------CccHHHHHHHHhhHHHhcCChHHHHHH
Confidence            455778999999999999999999888      77765 21111         112 23445789999999999999998


Q ss_pred             HHHc
Q psy12373        127 LILS  130 (198)
Q Consensus       127 y~~a  130 (198)
                      |.++
T Consensus        69 y~~a   72 (95)
T d1tjca_          69 TKKL   72 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8775

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.39  E-value=0.0021  Score=44.85  Aligned_cols=91  Identities=11%  Similarity=0.110  Sum_probs=56.9

Q ss_pred             HHHHHHcCCHHHHHHHHHHccCHHHHHhhhhccC---C-----------hHHHHHHHHHHHHcCCHHHHHHHHHHhcCHH
Q psy12373         13 WTLYESAGNYEKAATCYIQLKNWTKIGQLLPHIK---S-----------ATTFIQYAKAKEAMGSYRESVGAYERAEDYD   78 (198)
Q Consensus        13 a~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~---~-----------~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~   78 (198)
                      +.-|-+.|++++|+.+|.++      .+++....   +           ..++..+|..+...|++++|+++|.++    
T Consensus        24 G~~~f~~~~y~~A~~~Y~~a------l~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~a----   93 (153)
T d2fbna1          24 GNEFFKKNEINEAIVKYKEA------LDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV----   93 (153)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------HHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH----
T ss_pred             HHHHHHcCCHHHHHHHHHHH------HhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcc----
Confidence            33344669999999998764      33332211   1           124445666666666666666666654    


Q ss_pred             HHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373         79 NVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus        79 ~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                        +.+-                -.+.......|..+...|++++|+..|.++-
T Consensus        94 --l~~~----------------p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al  128 (153)
T d2fbna1          94 --LKID----------------KNNVKALYKLGVANMYFGFLEEAKENLYKAA  128 (153)
T ss_dssp             --HHHS----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             --cccc----------------chhhhhhHHhHHHHHHcCCHHHHHHHHHHHH
Confidence              3221                1234556678999999999999998886643

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=97.39  E-value=0.00064  Score=50.65  Aligned_cols=27  Identities=11%  Similarity=0.151  Sum_probs=24.6

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ..++...|..+...|++++|++.|.++
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~a   63 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQA   63 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            457888999999999999999999998

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.0016  Score=45.54  Aligned_cols=58  Identities=10%  Similarity=0.019  Sum_probs=38.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      +...|..+...|+|++|+++|.++      +.+.-                .++.....+|..+...|++++|+..|.++
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~a------l~~~p----------------~~~~~~~~lg~~~~~~~~~~~A~~~~~ka   70 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQA------IELNP----------------SNAIYYGNRSLAYLRTECYGYALGDATRA   70 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHHST----------------TCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhc------cccch----------------hhhhhhhhhHHHHHhccccchHHHHHHHH
Confidence            446688888999999999998887      43321                12333445677777777777776666554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.25  E-value=0.00074  Score=47.35  Aligned_cols=101  Identities=17%  Similarity=0.098  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHHHHHHH
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAAIHFLI  128 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~Av~~y~  128 (198)
                      .+..-|..+-..|+|.+|+.+|.++      ++++. ....++.........+ .......+|..+.+.|++++|++.|.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~a------l~~~~-~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~   91 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEA------LDFFI-HTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHAS   91 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH------HHTTT-TCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH------HhhCc-chhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhh
Confidence            3455788888999999999999987      77766 4343332221111100 01112234555555555555555443


Q ss_pred             HcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        129 LSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       129 ~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +                      ++.+ .+..+..+..+|..+...|+|.+|
T Consensus        92 ~----------------------al~~-~p~~~ka~~~~g~~~~~lg~~~~A  120 (153)
T d2fbna1          92 K----------------------VLKI-DKNNVKALYKLGVANMYFGFLEEA  120 (153)
T ss_dssp             H----------------------HHHH-STTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             c----------------------cccc-cchhhhhhHHhHHHHHHcCCHHHH
Confidence            2                      1112 345678999999999999999998

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.10  E-value=0.0011  Score=46.95  Aligned_cols=99  Identities=13%  Similarity=0.081  Sum_probs=57.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhh--ccCCHHHHHHHHHhcC-CHHHHHHHHHHHHhcCCHHHHHHH
Q psy12373         50 TFIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLD--HLNDIRHAVDIVKAKK-CTEGAKRIADYCNKHGDFGAAIHF  126 (198)
Q Consensus        50 l~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~--~~~~~~~a~~l~~~~~-~~~~~~~~A~~~~~~g~~~~Av~~  126 (198)
                      .+...|..+-..|+|.+|++.|.++      +.+.-.  ......+...+   .+ .......+|..+.+.|++++|+..
T Consensus        29 ~~~~~~~~~~~~~~y~~Ai~~y~~a------l~~~~~~~~~~~~~~~~~~---~~~~~~~~~nla~~~~~~~~~~~Ai~~   99 (169)
T d1ihga1          29 DLKNIGNTFFKSQNWEMAIKKYTKV------LRYVEGSRAAAEDADGAKL---QPVALSCVLNIGACKLKMSDWQGAVDS   99 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHHHHHSCHHHHGGG---HHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH------HHhhhhhhhhhhhHHHHHh---ChhhHHHHHHHHHHHHhhcccchhhhh
Confidence            3456788888999999999999887      433220  00111111100   01 111222345555566666666555


Q ss_pred             HHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        127 LILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       127 y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      |.++                      +.+ .+..+..+..+|..|...|+|++|
T Consensus       100 ~~~a----------------------l~~-~p~~~~a~~~~g~~~~~l~~~~~A  130 (169)
T d1ihga1         100 CLEA----------------------LEI-DPSNTKALYRRAQGWQGLKEYDQA  130 (169)
T ss_dssp             HHHH----------------------HTT-CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhhh----------------------hhh-hhhhhhHHHhHHHHHHHccCHHHH
Confidence            5443                      112 245688899999999899998888

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.60  E-value=0.027  Score=43.65  Aligned_cols=108  Identities=6%  Similarity=-0.013  Sum_probs=69.3

Q ss_pred             HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC-CHHHHHHHHHHhcCH--------HHHHHHH
Q psy12373         14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG-SYRESVGAYERAEDY--------DNVVRVD   84 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g-~~~~A~~~Y~ka~~~--------~~av~l~   84 (198)
                      .+|.+.+.+++|+.+|.++      .++  .......+...|..+...| ++++|+++|.++-..        ..--.++
T Consensus        51 ~~~~~~e~~~~Al~~~~~a------i~l--nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          51 AVLQRDERSERAFKLTRDA------IEL--NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHTCCCHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHhCCchHHHHHHHHHH------HHH--CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence            3566777777777776443      333  3446778888898888876 699999999887422        1222233


Q ss_pred             hhccCCHHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         85 LDHLNDIRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        85 ~~~~~~~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      . .+|++++|+....+    .| +.......+..+...|++++|++.|.++
T Consensus       123 ~-~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~a  172 (315)
T d2h6fa1         123 E-WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL  172 (315)
T ss_dssp             H-HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred             H-hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            3 56778877766543    12 2444445677777777777777765544

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.54  E-value=0.0043  Score=43.19  Aligned_cols=80  Identities=10%  Similarity=0.015  Sum_probs=56.7

Q ss_pred             chHHHHHHHHHHcCC--------------------HHHHHHHHHHccCHHHHHhhhhc-------cC---------ChHH
Q psy12373          7 TLDRGKWTLYESAGN--------------------YEKAATCYIQLKNWTKIGQLLPH-------IK---------SATT   50 (198)
Q Consensus         7 ~~~~~Aa~~y~~~g~--------------------~~~Ai~~y~~~~~~~~a~~l~~~-------~~---------~~~l   50 (198)
                      |+|++|.+.|.++=+                    +..-..+|..+|+|+.+..-+..       ..         ....
T Consensus        23 g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a  102 (156)
T d2hr2a1          23 GEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISA  102 (156)
T ss_dssp             TCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHH
Confidence            678899988888722                    12346678888999886544431       11         1235


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHH
Q psy12373         51 FIQYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIR   92 (198)
Q Consensus        51 ~~~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~   92 (198)
                      +..+|..+...|++++|++.|.++      +++.-+..+.+.
T Consensus       103 ~~~~g~~~~~lg~~eeA~~~~~~A------l~l~~~~~~~~~  138 (156)
T d2hr2a1         103 VYSRALALDGLGRGAEAMPEFKKV------VEMIEERKGETP  138 (156)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHH------HHHHHHCCSCCT
T ss_pred             HhhhHHHHHHHHHHHHHHHHHHHH------HHhhHHhhchHH
Confidence            677899999999999999999998      888775444433

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.51  E-value=0.02  Score=38.51  Aligned_cols=29  Identities=7%  Similarity=-0.075  Sum_probs=20.9

Q ss_pred             CCHHHHHHHHHHHHh----cCCHHHHHHHHHHc
Q psy12373        102 KCTEGAKRIADYCNK----HGDFGAAIHFLILS  130 (198)
Q Consensus       102 ~~~~~~~~~A~~~~~----~g~~~~Av~~y~~a  130 (198)
                      .++.....++..+..    ..|+.+|+++|.+|
T Consensus        89 g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~A  121 (133)
T d1klxa_          89 NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA  121 (133)
T ss_dssp             TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHcCCccCCCHHHHHHHHHHH
Confidence            456666777777765    45788888888876

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0098  Score=39.96  Aligned_cols=89  Identities=11%  Similarity=-0.002  Sum_probs=53.0

Q ss_pred             HHHHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcC---CHHHHHHHHHHhcCHHHHHHHHhhccCC
Q psy12373         14 TLYESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMG---SYRESVGAYERAEDYDNVVRVDLDHLND   90 (198)
Q Consensus        14 ~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g---~~~~A~~~Y~ka~~~~~av~l~~~~~~~   90 (198)
                      .-+...+++++|.+.|.++      ..  ...+++.++..+|..+...+   ++++|+++|.++      +..-    ..
T Consensus         7 n~~~~~~~l~~Ae~~Y~~a------L~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~------l~~~----~~   68 (122)
T d1nzna_           7 NELVSVEDLLKFEKKFQSE------KA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEEL------LPKG----SK   68 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHH------HH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHH------TTTS----CH
T ss_pred             HHhcCHHHHHHHHHHHHHH------Hh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHH------Hhcc----CC
Confidence            3444556666666666433      11  13347788888888876544   344566666665      1100    00


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         91 IRHAVDIVKAKKCTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        91 ~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      ++          ..+....+|..+.+.|++++|+++|.++
T Consensus        69 ~~----------~~~~~~~Lg~~y~~~g~~~~A~~~~~~a   98 (122)
T d1nzna_          69 EE----------QRDYVFYLAVGNYRLKEYEKALKYVRGL   98 (122)
T ss_dssp             HH----------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ch----------HHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            00          0123557899999999999999988765

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.45  E-value=0.0033  Score=40.25  Aligned_cols=58  Identities=10%  Similarity=0.007  Sum_probs=44.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         11 GKWTLYESAGNYEKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        11 ~Aa~~y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +=+..+-+.|+++.|+..|.++      .++...     .+...++..+|..+...|++++|+++|.++
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~A------l~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~a   72 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQA------LRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL   72 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH------HHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH------HHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHH
Confidence            3456667779999999887655      344332     223578889999999999999999999998

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.37  E-value=0.13  Score=39.02  Aligned_cols=106  Identities=12%  Similarity=0.077  Sum_probs=56.2

Q ss_pred             HHHHHHHccCHHHHHhhhhc----cC-C-hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH--------HHHHHHHhhccCC
Q psy12373         25 AATCYIQLKNWTKIGQLLPH----IK-S-ATTFIQYAKAKEAMGSYRESVGAYERAEDY--------DNVVRVDLDHLND   90 (198)
Q Consensus        25 Ai~~y~~~~~~~~a~~l~~~----~~-~-~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~--------~~av~l~~~~~~~   90 (198)
                      .+.+....+.++.+..+..+    .+ + ..+...+++.....|+++.|.+.|.++-..        .....+.....|+
T Consensus       105 ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~  184 (308)
T d2onda1         105 YADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKD  184 (308)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCC
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccC
Confidence            34455555666665544432    11 2 234556677777777777777777776421        1111111112456


Q ss_pred             HHHHHHHHHh----cC-CHHHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373         91 IRHAVDIVKA----KK-CTEGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus        91 ~~~a~~l~~~----~~-~~~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                      .+.|..+-..    .| ++.....+++++.+.|+++.|..+|.++
T Consensus       185 ~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~a  229 (308)
T d2onda1         185 KSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV  229 (308)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence            6666554332    22 2344445666667777777766666654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=96.20  E-value=0.04  Score=39.28  Aligned_cols=78  Identities=6%  Similarity=-0.038  Sum_probs=43.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhcC------------------------------HHHHHHHHhhccCCHHHHHHHHHh-
Q psy12373         52 IQYAKAKEAMGSYRESVGAYERAED------------------------------YDNVVRVDLDHLNDIRHAVDIVKA-  100 (198)
Q Consensus        52 ~~~A~~~e~~g~~~~A~~~Y~ka~~------------------------------~~~av~l~~~~~~~~~~a~~l~~~-  100 (198)
                      ...|......|++++|+++|.++=.                              +....+++. .+|++++|+..+++ 
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~-~~g~~~~Al~~~~~a   93 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEI-ACGRASAVIAELEAL   93 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHH-HCCCchHHHHHHHHH
Confidence            3445566666666666666665422                              123344455 56666666665543 


Q ss_pred             ---cCCH-HHHHHHHHHHHhcCCHHHHHHHHHHc
Q psy12373        101 ---KKCT-EGAKRIADYCNKHGDFGAAIHFLILS  130 (198)
Q Consensus       101 ---~~~~-~~~~~~A~~~~~~g~~~~Av~~y~~a  130 (198)
                         .|.. .....+...|...|++.+|+..|.++
T Consensus        94 l~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          94 TFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence               3332 23335666666667777776666654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.05  E-value=0.011  Score=39.69  Aligned_cols=84  Identities=8%  Similarity=-0.138  Sum_probs=50.9

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHHHHHHHHhcCCH---HHHHHHHHH
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKRIADYCNKHGDF---GAAIHFLIL  129 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~~A~~~~~~g~~---~~Av~~y~~  129 (198)
                      .+++.+.+.+++++|++.|.++      +.+                ...+++....+|..+...++.   ++||.+|.+
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~a------L~~----------------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~   61 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSE------KAA----------------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEE   61 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH------HHH----------------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH------Hhh----------------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHH
Confidence            4566666777778888777776      221                123456666788887765443   445555443


Q ss_pred             cCChHHHHHHHHHcchhhHHhhhhhhcC-CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        130 SKCYQDAFNLSQQHKKLHEFGKFLLEED-EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       130 ag~~~~A~~la~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +=.                      ..+ +..++.+..+|..|.+.|+|++|
T Consensus        62 ~l~----------------------~~~~~~~~~~~~~Lg~~y~~~g~~~~A   91 (122)
T d1nzna_          62 LLP----------------------KGSKEEQRDYVFYLAVGNYRLKEYEKA   91 (122)
T ss_dssp             HTT----------------------TSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHh----------------------ccCCchHHHHHHHHHHHHHHHhhhHHH
Confidence            211                      111 11134677888888888888888

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.86  E-value=0.14  Score=38.86  Aligned_cols=23  Identities=4%  Similarity=-0.204  Sum_probs=15.6

Q ss_pred             CCCHHHHHHHHHHHHhCCChhhH
Q psy12373        158 EPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       158 ~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +.++......++++.+.|++.+|
T Consensus       200 p~~~~~w~~y~~~~~~~g~~~~a  222 (308)
T d2onda1         200 GDIPEYVLAYIDYLSHLNEDNNT  222 (308)
T ss_dssp             TTCHHHHHHHHHHHHTTCCHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCChHHH
Confidence            34567777777777777777666

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=95.65  E-value=0.018  Score=39.62  Aligned_cols=51  Identities=10%  Similarity=0.103  Sum_probs=30.7

Q ss_pred             HHHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHc----------CCHHHHHHHHHHh
Q psy12373         16 YESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAM----------GSYRESVGAYERA   74 (198)
Q Consensus        16 y~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~----------g~~~~A~~~Y~ka   74 (198)
                      |++.+.++.|+..|.++      ..+  ...++..+..+|..+-..          +.+++|++.|.++
T Consensus         7 ~~r~~~fe~A~~~~e~a------l~~--~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kA   67 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENT------YKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEA   67 (145)
T ss_dssp             HHHHHHHHHHHHHHHHH------HHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHH------Hhh--CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            45566666666666543      222  345778888888776544          4445566665554

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.29  E-value=0.22  Score=40.17  Aligned_cols=106  Identities=12%  Similarity=0.030  Sum_probs=74.0

Q ss_pred             HHHHccCHHHHHhhhhccC-----ChHHHHHHHHHHHHcCCHHHHHHHHHHhcC---H----------------------
Q psy12373         28 CYIQLKNWTKIGQLLPHIK-----SATTFIQYAKAKEAMGSYRESVGAYERAED---Y----------------------   77 (198)
Q Consensus        28 ~y~~~~~~~~a~~l~~~~~-----~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~---~----------------------   77 (198)
                      .....++|..+......++     .+...+|.|+.++..|+-++|...|..+-.   |                      
T Consensus       294 ~al~~~~~~~~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~  373 (450)
T d1qsaa1         294 MALGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQ  373 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCS
T ss_pred             HHHHcCChHHHHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCc
Confidence            3445677887766665433     567889999999999999999999998763   1                      


Q ss_pred             -----------HHHHHHHhhccCCHHHHHHHHH---hcCCHHHHHHHHHHHHhcCCHHHHHHHHHHcCChH
Q psy12373         78 -----------DNVVRVDLDHLNDIRHAVDIVK---AKKCTEGAKRIADYCNKHGDFGAAIHFLILSKCYQ  134 (198)
Q Consensus        78 -----------~~av~l~~~~~~~~~~a~~l~~---~~~~~~~~~~~A~~~~~~g~~~~Av~~y~~ag~~~  134 (198)
                                 ...+..+. .+|+...|.+.-+   ...++.....+|..-.+.|.++.||..-.+++.|+
T Consensus       374 ~~~~~~~~~~~~~ra~~L~-~~g~~~~A~~e~~~l~~~~~~~~~~~la~lA~~~g~~~~aI~a~~~~~~~d  443 (450)
T d1qsaa1         374 NVDSALTQGPEMARVRELM-YWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWD  443 (450)
T ss_dssp             CCCCHHHHSHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTT
T ss_pred             cHHHhhhcChHHHHHHHHH-HcCCchHHHHHHHHHHhCCCHHHHHHHHHHHHHCCChhHHHHHHHHHHccC
Confidence                       23344444 5677777765322   23456666677777777888888887777777764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.99  E-value=0.23  Score=32.92  Aligned_cols=68  Identities=9%  Similarity=0.219  Sum_probs=38.2

Q ss_pred             CHHHHHHHHHHh---cCHHHHHHHHhhccCCHHHHHHHHH---hcCCHHHHHHHHHHHHh----cCCHHHHHHHHHHc
Q psy12373         63 SYRESVGAYERA---EDYDNVVRVDLDHLNDIRHAVDIVK---AKKCTEGAKRIADYCNK----HGDFGAAIHFLILS  130 (198)
Q Consensus        63 ~~~~A~~~Y~ka---~~~~~av~l~~~~~~~~~~a~~l~~---~~~~~~~~~~~A~~~~~----~g~~~~Av~~y~~a  130 (198)
                      |+++|+++|.++   |+......+......+.++++...+   +..++.....+|..+..    ..|+++|+++|.++
T Consensus         8 d~~~A~~~~~kaa~~g~~~a~~~l~~~~~~~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~a   85 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKA   85 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCTTHHHHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCChhhhhhhccccccCHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhh
Confidence            456666666654   3333333333223345555555443   34566677778877764    45677777777765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=94.82  E-value=0.3  Score=35.68  Aligned_cols=45  Identities=11%  Similarity=0.197  Sum_probs=24.2

Q ss_pred             HHccCHHHHHhhhhc---cCChHHHHHHHHHHHH----cCCHHHHHHHHHHh
Q psy12373         30 IQLKNWTKIGQLLPH---IKSATTFIQYAKAKEA----MGSYRESVGAYERA   74 (198)
Q Consensus        30 ~~~~~~~~a~~l~~~---~~~~~l~~~~A~~~e~----~g~~~~A~~~Y~ka   74 (198)
                      ...+++.+|.+...+   ..+...+..+|..+..    ..++..|..+|.++
T Consensus        13 ~~~~d~~~A~~~~~kAa~~g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a   64 (265)
T d1ouva_          13 YKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKA   64 (265)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcchhHHHHHHhhccc
Confidence            344555555555443   2355555556655554    44566666665555

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.67  E-value=0.09  Score=37.34  Aligned_cols=52  Identities=17%  Similarity=0.105  Sum_probs=38.4

Q ss_pred             HHHHHHHHHccCHHHHHhhhhc-----cCChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         23 EKAATCYIQLKNWTKIGQLLPH-----IKSATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        23 ~~Ai~~y~~~~~~~~a~~l~~~-----~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      ...++++...|+|+.+...+..     ..+..++..++..+...|++.+|++.|.++
T Consensus        71 ~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          71 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            3445566666666666555542     237788889999999999999999999987

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.17  E-value=0.19  Score=38.48  Aligned_cols=109  Identities=10%  Similarity=-0.025  Sum_probs=70.8

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcCH----HHH----HHHHhhccC-CHHHHHHHHHh----cC-CHHHHHHHHHH
Q psy12373         48 ATTFIQYAKAKEAMGSYRESVGAYERAEDY----DNV----VRVDLDHLN-DIRHAVDIVKA----KK-CTEGAKRIADY  113 (198)
Q Consensus        48 ~~l~~~~A~~~e~~g~~~~A~~~Y~ka~~~----~~a----v~l~~~~~~-~~~~a~~l~~~----~~-~~~~~~~~A~~  113 (198)
                      ..++..+|..+...+.+++|+++|.++=..    -.|    -.++. .+| ++++|+....+    .| +.......|..
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~-~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLK-SLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH-HTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHH-HhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHH
Confidence            345667788999999999999999998421    111    11223 444 47777665432    23 24444556666


Q ss_pred             HHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        114 CNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       114 ~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      +...|++++|+++|.++=.                      + .+.....+...+..+...|++++|
T Consensus       122 ~~~l~~~~eAl~~~~kal~----------------------~-dp~n~~a~~~~~~~~~~~~~~~~A  165 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILN----------------------Q-DAKNYHAWQHRQWVIQEFKLWDNE  165 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHH----------------------H-CTTCHHHHHHHHHHHHHHTCCTTH
T ss_pred             HHhhccHHHHHHHHhhhhh----------------------h-hhcchHHHHHHHHHHHHHHhhHHH
Confidence            6666666666555443311                      1 345688999999999999999998

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=94.03  E-value=0.2  Score=37.85  Aligned_cols=51  Identities=14%  Similarity=0.081  Sum_probs=40.8

Q ss_pred             HHcCCHHHHHHHHHHccCHHHHHhhhhccCChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373         17 ESAGNYEKAATCYIQLKNWTKIGQLLPHIKSATTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus        17 ~~~g~~~~Ai~~y~~~~~~~~a~~l~~~~~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      .+.|+++.|+..|.+.      .+.  ..++..+...+++.+...|++++|++.|.++-
T Consensus         7 L~~G~l~eAl~~l~~a------l~~--~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~   57 (264)
T d1zbpa1           7 LSEGQLQQALELLIEA------IKA--SPKDASLRSSFIELLCIDGDFERADEQLMQSI   57 (264)
T ss_dssp             TTTTCHHHHHHHHHHH------HHT--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHH------HHH--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3458888888888543      222  44588999999999999999999999999984

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.74  E-value=0.052  Score=44.73  Aligned_cols=28  Identities=18%  Similarity=0.216  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHcCC
Q psy12373        105 EGAKRIADYCNKHGDFGAAIHFLILSKC  132 (198)
Q Consensus       105 ~~~~~~A~~~~~~g~~~~Av~~y~~ag~  132 (198)
                      ....++|..+...|++.+|+.+|.+|=.
T Consensus       187 ~~~~~Lg~~~~~~~~~~~A~~~y~ral~  214 (497)
T d1ya0a1         187 QPYNQLAILASSKGDHLTTIFYYCRSIA  214 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3455789999999999999999998854

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=93.53  E-value=0.023  Score=39.05  Aligned_cols=18  Identities=6%  Similarity=-0.012  Sum_probs=13.0

Q ss_pred             HHHHcCCHHHHHHHHHHh
Q psy12373         57 AKEAMGSYRESVGAYERA   74 (198)
Q Consensus        57 ~~e~~g~~~~A~~~Y~ka   74 (198)
                      .+++.+.|++|++.|.++
T Consensus         6 ~~~r~~~fe~A~~~~e~a   23 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENT   23 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHH
Confidence            356666788888888776

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.24  E-value=0.006  Score=47.32  Aligned_cols=28  Identities=4%  Similarity=-0.147  Sum_probs=17.8

Q ss_pred             ChHHHHHHHHHHHHcCCHHHHHHHHHHh
Q psy12373         47 SATTFIQYAKAKEAMGSYRESVGAYERA   74 (198)
Q Consensus        47 ~~~l~~~~A~~~e~~g~~~~A~~~Y~ka   74 (198)
                      +...+..+|..+...|++++|+..|.++
T Consensus       177 ~~~a~~~l~~~~~~~~~~~~A~~~~~~~  204 (334)
T d1dcea1         177 NYSSWHYRSCLLPQLHPQPDSGPQGRLP  204 (334)
T ss_dssp             CHHHHHHHHHHHHHHSCCCCSSSCCSSC
T ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence            5666666677777777766665555443

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=91.31  E-value=0.22  Score=37.51  Aligned_cols=28  Identities=21%  Similarity=0.144  Sum_probs=19.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHcC
Q psy12373        104 TEGAKRIADYCNKHGDFGAAIHFLILSK  131 (198)
Q Consensus       104 ~~~~~~~A~~~~~~g~~~~Av~~y~~ag  131 (198)
                      ......+++.+...|++++|+..|.++-
T Consensus        30 ~~ar~~La~lL~~~G~~e~A~~~l~~a~   57 (264)
T d1zbpa1          30 ASLRSSFIELLCIDGDFERADEQLMQSI   57 (264)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            3445567777777888888877777764

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=90.35  E-value=2.1  Score=31.99  Aligned_cols=49  Identities=8%  Similarity=-0.169  Sum_probs=28.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHcCChHHHHHHHHHcchhhHHhhhhhhcCCCCHHHHHHHHHHHHhCCChhhH
Q psy12373        109 RIADYCNKHGDFGAAIHFLILSKCYQDAFNLSQQHKKLHEFGKFLLEEDEPNPVELKRLAIHFEEDKGVLTS  180 (198)
Q Consensus       109 ~~A~~~~~~g~~~~Av~~y~~ag~~~~A~~la~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~e~~g~~~~A  180 (198)
                      ..+..+...+.+++|+..|.++-.                       ..+.++..+..++..+...|++.+|
T Consensus       149 ~~~~~~~~~~~~~~Al~~~~~~i~-----------------------~~p~~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         149 RRFVAAQAAVAPAEELAFTDSLIT-----------------------RNFSNYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             HHHHHHHTCCCHHHHHHHHHTTTT-----------------------TTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred             HHHHHHHhccccHHHHHHHHHHHH-----------------------cCCCCHHHHHHHHHHHHHhcCHHHH
Confidence            344555556666666655544432                       1234566666677777777766665

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.77  E-value=0.43  Score=38.91  Aligned_cols=30  Identities=17%  Similarity=0.145  Sum_probs=25.8

Q ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q psy12373         46 KSATTFIQYAKAKEAMGSYRESVGAYERAE   75 (198)
Q Consensus        46 ~~~~l~~~~A~~~e~~g~~~~A~~~Y~ka~   75 (198)
                      ++...+.++|..+...|++.+|+.+|.|+-
T Consensus       184 ~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral  213 (497)
T d1ya0a1         184 SNGQPYNQLAILASSKGDHLTTIFYYCRSI  213 (497)
T ss_dssp             TBSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            466888899999999999999999999883

>d1om2a_ a.23.4.1 (A:) Mitochondrial import receptor subunit Tom20 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: Open three-helical up-and-down bundle
superfamily: Mitochondrial import receptor subunit Tom20
family: Mitochondrial import receptor subunit Tom20
domain: Mitochondrial import receptor subunit Tom20
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=80.82  E-value=2.8  Score=26.32  Aligned_cols=47  Identities=15%  Similarity=0.135  Sum_probs=39.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhcCHHHHHHHHhhccCCHHHHHHHHHhcCCHHHHHH
Q psy12373         53 QYAKAKEAMGSYRESVGAYERAEDYDNVVRVDLDHLNDIRHAVDIVKAKKCTEGAKR  109 (198)
Q Consensus        53 ~~A~~~e~~g~~~~A~~~Y~ka~~~~~av~l~~~~~~~~~~a~~l~~~~~~~~~~~~  109 (198)
                      .+|..+-..|++++++.+|.+|      |.+|-    ++.+...+.+++-++.++..
T Consensus        25 ~lGE~Ll~~G~~~~g~~h~~nA------i~Vc~----qP~~LL~ilq~tlP~~Vf~~   71 (95)
T d1om2a_          25 QLGEELLAQGDYEKGVDHLTNA------IAVCG----QPQQLLQVLQQTLPPPVFQM   71 (95)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHH------HHHHS----CHHHHHHHHHHHSCCHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHH------HHHcC----CHHHHHHHHHhhCCHHHHHH
Confidence            5688888999999999999887      88886    79999999988766666554