Psyllid ID: psy12421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MALRVFEPRSLRYPQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGEQ
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEEcccccccccccEEEEEccccccccccccccccccEEEEccccEEEcccccEEEEEEEEEEcccEEEEEEccEEcccccEEEEEEccEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEEcccccHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccEEcccccEEEEcccEEEEEEEEEcccccEEEEEEccEEcccccEEEEEEccEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEEccccccccccccccEEEcccc
Coil and Loop (DISEMBL)
malrvfeprslrypqdnprlrtraipktipayvpevqqvrrreplqiTFWQEtvesapnftfllrpRVMQVRQTCKLlcclsgkppptvkwykgnrelskrdysmsysdgvvsmeiidckpedsgeykcvatnkhgtdetnCVVIVESEEESKEQQELAHNFLYSGEQ
Flexible Loop (DISEMBL)
malrvfeprslrypqdnprlrtraipktipayvpevqqvrrREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLlcclsgkppptvkwykgnrelskrdySMSYSDGVVSMEIIDCKPEDSGEYKCVAtnkhgtdetNCVVIVESEEESKEQQELAhnflysgeq
Low Complexity Region (SEG)
MALRVFEPRSLRYPQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVeseeeskeqqeLAHNFLYSGEQ
Disordered region (IsUnstruct)
************************IPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV**********************
Disordered Region (DISOPRED)
*A*R****************************************************APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV**********************
Disordered Region (DISEMBL)
MALRVFEPRSLRYPQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE**********LAHNFLYSGEQ
Disordered Region (DISPRO)
**********************************************ITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHN*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MALRVFEPRSLRYPQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGEQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q23551	7158	Twitchin OS=Caenorhabditi	yes	N/A	0.494	0.011	0.404	5e-16
Q8WZ42	34350	Titin OS=Homo sapiens GN=	yes	N/A	0.541	0.002	0.358	1e-10
Q5DTJ9	1315	Myopalladin OS=Mus muscul	yes	N/A	0.648	0.082	0.309	6e-10
Q86TC9	1320	Myopalladin OS=Homo sapie	no	N/A	0.648	0.082	0.309	1e-09
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.541	0.002	0.347	2e-09
O01761	8081	Muscle M-line assembly pr	no	N/A	0.601	0.012	0.339	3e-09
Q02173	1450	M-protein, striated muscl	no	N/A	0.613	0.071	0.348	6e-09
O60229	2985	Kalirin OS=Homo sapiens G	no	N/A	0.559	0.031	0.34	6e-09
P97924	2959	Kalirin OS=Rattus norvegi	no	N/A	0.559	0.031	0.34	4e-08
A2AAJ9	8891	Obscurin OS=Mus musculus	no	N/A	0.75	0.014	0.296	6e-08

>sp|Q23551|UNC22_CAEEL Twitchin OS=Caenorhabditis elegans GN=unc-22 PE=1 SV=3

 Score = 83.6 bits (205), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 38/94 (40%), Positives = 56/94 (59%)

Query: 56   SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME 115
            SAP FTF LR R++Q    CKL C L G P PT++W K    + +    +S+  GV S+E
Sbjct: 6706 SAPFFTFHLRNRLIQKNHQCKLTCSLQGNPNPTIEWMKDGHPVDEDRVQVSFRSGVCSLE 6765

Query: 116  IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
            I + + +D+G Y   ATN  G D + CV+ V+++
Sbjct: 6766 IFNARVDDAGTYTVTATNDLGVDVSECVLTVQTK 6799

Regulator of muscle contraction and relaxation. Senses mechanical strain that occurs during muscle activity by unfolding in clearly resolvable steps at differing forces.
Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score = 65.9 bits (159), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 33/92 (35%), Positives = 53/92 (57%), Gaps = 1/92 (1%)

Query: 57   APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSME 115
            AP FT  LR     V  TC+L C ++G  P  V W+K  +E++  D Y +++ +G  S+E
Sbjct: 5039 APFFTKPLRNVDSVVNGTCRLDCKIAGSLPMRVSWFKDGKEIAASDRYRIAFVEGTASLE 5098

Query: 116  IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            II     D+G + C ATN  G+ +++  +IV+
Sbjct: 5099 IIRVDMNDAGNFTCRATNSVGSKDSSGALIVQ 5130

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q5DTJ9|MYPN_MOUSE Myopalladin OS=Mus musculus GN=Mypn PE=2 SV=2

 Score = 63.5 bits (153), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)

Query: 49  FWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSY 107
           +++E +   P FT  LR R +      +L C + G PPP V+WY   +EL    D  +  
Sbjct: 258 YYEEPLGQPPRFTQKLRSREVPEGSRVQLDCIVVGIPPPQVRWYCEGKELENSPDIHIVQ 317

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
           +  + S+ I +   ED+G Y C A+N +GTD T+  + +E    S  + +
Sbjct: 318 AGNLHSLTIAEAFEEDTGRYSCFASNIYGTDSTSAEIYIEGVSSSDSEGD 367

Component of the sarcomere that tethers together nebulin (skeletal muscle) and nebulette (cardiac muscle) to alpha-actinin, at the Z lines.

Mus musculus (taxid: 10090)

>sp|Q86TC9|MYPN_HUMAN Myopalladin OS=Homo sapiens GN=MYPN PE=1 SV=2

 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/110 (30%), Positives = 56/110 (50%), Gaps = 1/110 (0%)

Query: 49  FWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSY 107
           +++E +   P FT  LR R +      +L C + G PPP V+WY   +EL    D  +  
Sbjct: 260 YYEEPLGQPPRFTQKLRSREVPEGTRVQLDCIVVGIPPPQVRWYCEGKELENSPDIHIVQ 319

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
           +  + S+ I +   ED+G Y C A+N +GTD T+  + +E    S  + +
Sbjct: 320 AGNLHSLTIAEAFEEDTGRYSCFASNIYGTDSTSAEIYIEGVSSSDSEGD 369

Component of the sarcomere that tethers together nebulin (skeletal muscle) and nebulette (cardiac muscle) to alpha-actinin, at the Z lines.

Homo sapiens (taxid: 9606)

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 32/92 (34%), Positives = 51/92 (55%), Gaps = 1/92 (1%)

Query: 57   APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSME 115
            AP FT  LR     V   C+L C ++G  P  V W+K  +EL+  D Y +++ +G  S+E
Sbjct: 5000 APLFTKPLRNVDSVVGGACRLDCKIAGSLPMRVSWFKDGKELTASDRYQIAFVEGTASLE 5059

Query: 116  IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            I      D+G + C ATN  G+ +++  +IV+
Sbjct: 5060 ISRVDMNDAGNFTCRATNSVGSKDSSGALIVQ 5091

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 8/109 (7%)

Query: 57   APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSM 114
            AP+F   ++P V+ V +T  L   +SGKP P+VKWYK   EL  S R    +  DG   +
Sbjct: 3919 APDFLQPVKPAVVTVGETAVLEGKISGKPKPSVKWYKNGEELKPSDRVKIENLDDGTQRL 3978

Query: 115  EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFL 163
             + + K +D  EY+C A+N+ G   ++  + V      KE  ++A  F 
Sbjct: 3979 TVTNAKLDDMDEYRCEASNEFGDVWSDVTLTV------KEPAQVAPGFF 4021

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q02173|MPSF_CHICK M-protein, striated muscle OS=Gallus gallus PE=2 SV=1

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 51/109 (46%), Gaps = 6/109 (5%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-----SKRDYSM 105
           +E +  AP     LR   +  + + +L   + G P P V+WYK N EL         YS+
Sbjct: 135 EEKISRAPEILVRLRSHTVWEKMSVRLCFTVQGFPSPVVQWYK-NEELITPASDPAKYSV 193

Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE 154
               GV  + I     +DS  Y  VATN HG   TNC V+V    ES+E
Sbjct: 194 ENKYGVHVLHINRADFDDSATYSAVATNIHGQASTNCAVVVRRFRESEE 242

Is a structural constituent of myofibrillar M-band in striated muscle.

Gallus gallus (taxid: 9031)

>sp|O60229|KALRN_HUMAN Kalirin OS=Homo sapiens GN=KALRN PE=1 SV=2

 Score = 60.1 bits (144), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 52/100 (52%), Gaps = 6/100 (6%)

Query: 55   ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-----YSMSYSD 109
            E AP F   L      +  T  L C + G+P PT+ W   ++ +   D     Y++S  D
Sbjct: 2467 EVAPEFLVPLVDVTCLLGDTVILQCKVCGRPKPTITWKGPDQNILDTDNSSATYTVSSCD 2526

Query: 110  -GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
             G ++++I +  P+DSG Y C+ATN HGT  T+  V V+ 
Sbjct: 2527 SGEITLKICNLMPQDSGIYTCIATNDHGTTSTSATVKVQG 2566

Promotes the exchange of GDP by GTP. Activates specific Rho GTPase family members, thereby inducing various signaling mechanisms that regulate neuronal shape, growth, and plasticity, through their effects on the actin cytoskeleton. Induces lamellipodia independent of its GEF activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P97924|KALRN_RAT Kalirin OS=Rattus norvegicus GN=Kalrn PE=1 SV=3

 Score = 57.8 bits (138), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 6/100 (6%)

Query: 55   ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-----YSMSYSD 109
            E AP F   L      +  T  L C   G+P PT+ W   ++ +   D     Y++S  D
Sbjct: 2441 EVAPEFLVPLVDVTCLLGDTVLLQCKACGRPKPTITWKGPDQNILDTDNSSATYTISSCD 2500

Query: 110  -GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
             G  +++I +  P+DSG Y C+ATN HGT  T+  V V+ 
Sbjct: 2501 SGESTLKICNLMPQDSGIYTCIATNDHGTASTSATVKVQG 2540

Promotes the exchange of GDP by GTP. Activates specific Rho GTPase family members, thereby inducing various signaling mechanisms that regulate neuronal shape, growth, and plasticity, through their effects on the actin cytoskeleton. Induces lamellipodia independent of its GEF activity. Isoforms 1 and 7 are necessary for neuronal development and axonal outgrowth. Isoform 6 is required for dendritic spine formation.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|A2AAJ9|OBSCN_MOUSE Obscurin OS=Mus musculus GN=Obscn PE=2 SV=2

 Score = 57.0 bits (136), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 40/135 (29%), Positives = 60/135 (44%), Gaps = 9/135 (6%)

Query: 15   QDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQT 74
            +  PR     I K  P   P V       PL  T   +T ++AP F   L+ + +Q    
Sbjct: 6032 EQGPRGVEMRIGKVAPTVTPAV-------PLAKTPGLQTSDAAPVFLTELQNQDVQDGYP 6084

Query: 75   CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSD--GVVSMEIIDCKPEDSGEYKCVAT 132
                C ++G+P P+V+W+K  + L + D+ M   D  G   + I    P D G Y+C+A 
Sbjct: 6085 MSFDCVVTGQPVPSVRWFKDGKLLEEDDHYMINEDQQGGHQLIITAVVPADMGVYRCLAE 6144

Query: 133  NKHGTDETNCVVIVE 147
            N  G   T   + VE
Sbjct: 6145 NSMGVSSTKAELRVE 6159

Involved in myofibrillogenesis. Seems to be involved in assembly of myosin into sarcomeric A bands in striated muscle.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
340710318	8715	PREDICTED: twitchin-like [Bombus terrest	0.880	0.016	0.684	3e-57
350413804	8700	PREDICTED: twitchin-like [Bombus impatie	0.880	0.017	0.684	3e-57
380026625	8679	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.880	0.017	0.691	5e-57
383852204	8627	PREDICTED: twitchin-like [Megachile rotu	0.880	0.017	0.684	2e-56
307200525	5935	Titin [Harpegnathos saltator]	0.880	0.024	0.684	4e-56
328710146	8645	PREDICTED: twitchin-like [Acyrthosiphon	0.863	0.016	0.664	6e-56
195450769	9207	GK13703 [Drosophila willistoni] gi|19416	0.880	0.016	0.711	1e-55
345486445	8816	PREDICTED: twitchin-like [Nasonia vitrip	0.886	0.016	0.68	1e-55
328789682	8619	PREDICTED: LOW QUALITY PROTEIN: twitchin	0.880	0.017	0.677	2e-55
263359660	8965	hypothetical protein DVIR88_6g0033 [Dros	0.880	0.016	0.704	3e-55

>gi|340710318|ref|XP_003393739.1| PREDICTED: twitchin-like [Bombus terrestris]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 123/149 (82%)

Query: 20   LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
            L  + +PK IP Y PE+  VRRREPL    W ET+ESAP+FTFLLRPRV+QVRQTCKLLC
Sbjct: 8180 LNVQPLPKEIPKYRPELHPVRRREPLGYNVWLETIESAPSFTFLLRPRVIQVRQTCKLLC 8239

Query: 80   CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            CL+G PPPTVKWYK   ELSK  Y+M+ SDGVV+MEIIDCKPEDSG+Y+C+ATNKHG DE
Sbjct: 8240 CLAGNPPPTVKWYKDREELSKHHYAMTNSDGVVTMEIIDCKPEDSGKYRCIATNKHGKDE 8299

Query: 140  TNCVVIVESEEESKEQQELAHNFLYSGEQ 168
            T+CVVIVE   E++EQ +LAH+ L+SG++
Sbjct: 8300 TSCVVIVEGTGETEEQLKLAHDLLHSGDR 8328

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350413804|ref|XP_003490119.1| PREDICTED: twitchin-like [Bombus impatiens]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 123/149 (82%)

Query: 20   LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
            L  + +PK IP Y PE+  VRRREPL    W ET+ESAP+FTFLLRPRV+QVRQTCKLLC
Sbjct: 8158 LNVQPLPKEIPKYRPELHPVRRREPLGYNVWLETIESAPSFTFLLRPRVIQVRQTCKLLC 8217

Query: 80   CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            CL+G PPPTVKWYK   ELSK  Y+M+ SDGVV+MEIIDCKPEDSG+Y+C+ATNKHG DE
Sbjct: 8218 CLAGNPPPTVKWYKDREELSKHHYAMTNSDGVVTMEIIDCKPEDSGKYRCIATNKHGKDE 8277

Query: 140  TNCVVIVESEEESKEQQELAHNFLYSGEQ 168
            T+CVVIVE   E++EQ +LAH+ L+SG++
Sbjct: 8278 TSCVVIVEGTGETEEQLKLAHDLLHSGDR 8306

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380026625|ref|XP_003697047.1| PREDICTED: LOW QUALITY PROTEIN: twitchin-like [Apis florea]

 Score =  225 bits (573), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 103/149 (69%), Positives = 122/149 (81%)

Query: 20   LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
            L  + +PK IP Y PE+  VRRREPL    W ET+ESAPNFTFLLRPRV+QVRQTCKLLC
Sbjct: 8138 LNVQPLPKEIPKYRPELHPVRRREPLGYNVWLETIESAPNFTFLLRPRVIQVRQTCKLLC 8197

Query: 80   CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            CLSG PPPTVKWYK   ELSK  Y M+++DGVV+MEIIDCKPEDSG+Y+CVATN HG DE
Sbjct: 8198 CLSGNPPPTVKWYKDREELSKYHYPMTHADGVVTMEIIDCKPEDSGKYRCVATNIHGKDE 8257

Query: 140  TNCVVIVESEEESKEQQELAHNFLYSGEQ 168
            T+CVVIVE   E++EQ +LAH+ L+SG++
Sbjct: 8258 TSCVVIVEGTGETEEQVKLAHDLLHSGDR 8286

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383852204|ref|XP_003701618.1| PREDICTED: twitchin-like [Megachile rotundata]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 122/149 (81%)

Query: 20   LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
            L  + +P  IP Y PE+  VRRREPL    W ET+ESAP+FTFLLRPRV+QVRQTCKLLC
Sbjct: 8081 LNVQPLPVEIPKYRPELHPVRRREPLGYNVWLETIESAPSFTFLLRPRVIQVRQTCKLLC 8140

Query: 80   CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            CLSG PPPTVKWYK   ELSK  Y+M+ +DGVV+MEIIDCKPEDSG+Y+CVATNKHG DE
Sbjct: 8141 CLSGNPPPTVKWYKDREELSKHHYAMTNADGVVTMEIIDCKPEDSGKYRCVATNKHGKDE 8200

Query: 140  TNCVVIVESEEESKEQQELAHNFLYSGEQ 168
            T+CVVIVE   E++EQ +LAH+ L+SG++
Sbjct: 8201 TSCVVIVEGTGETEEQVKLAHDLLHSGDR 8229

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200525|gb|EFN80687.1| Titin [Harpegnathos saltator]

 Score =  222 bits (566), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 102/149 (68%), Positives = 122/149 (81%)

Query: 20   LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
            L  + +P+ IP Y PE+Q VRRREPL    W E +ESAP+FTFLLRPRV+QVRQTCKLLC
Sbjct: 5387 LNVQPLPREIPRYRPELQPVRRREPLGYNVWLEMIESAPSFTFLLRPRVIQVRQTCKLLC 5446

Query: 80   CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            CLSG PPPTVKWYK   ELSK +Y MS +DGVV+MEIIDCKPEDSG+Y+CVA+NKHG DE
Sbjct: 5447 CLSGNPPPTVKWYKDREELSKYNYPMSNADGVVTMEIIDCKPEDSGKYRCVASNKHGKDE 5506

Query: 140  TNCVVIVESEEESKEQQELAHNFLYSGEQ 168
            T+CVVIVE   E+ EQ +LAH+ L+SG++
Sbjct: 5507 TSCVVIVEGTGETAEQVKLAHDLLHSGDR 5535

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328710146|ref|XP_003244179.1| PREDICTED: twitchin-like [Acyrthosiphon pisum]

 Score =  221 bits (564), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 125/146 (85%)

Query: 20   LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
            L  + +PK+ P Y PEV QVRRREPL  T++ E  ESAPNFTFLLRPRV+Q+ QTCKLLC
Sbjct: 8107 LNVQPLPKSAPVYRPEVAQVRRREPLANTYYIEEKESAPNFTFLLRPRVIQIHQTCKLLC 8166

Query: 80   CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            CLSG P PT++W++G +EL+KRDY+++++DGV+++EIIDCKPEDSG+Y+CVATN HGTDE
Sbjct: 8167 CLSGTPIPTIQWFRGTKELTKRDYTITHTDGVITLEIIDCKPEDSGKYRCVATNVHGTDE 8226

Query: 140  TNCVVIVESEEESKEQQELAHNFLYS 165
            T+CVVIVE  E+S+EQ EL+HN L+S
Sbjct: 8227 TSCVVIVEGIEQSQEQAELSHNLLHS 8252

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195450769|ref|XP_002072625.1| GK13703 [Drosophila willistoni] gi|194168710|gb|EDW83611.1| GK13703 [Drosophila willistoni]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 106/149 (71%), Positives = 117/149 (78%)

Query: 20   LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
            L    +PK  P Y  E   VRRREPL  TFWQE  ESAP+FTFLLRPRVMQ R TCKLLC
Sbjct: 8669 LNVHPLPKEQPRYRTESTPVRRREPLPYTFWQEESESAPSFTFLLRPRVMQARDTCKLLC 8728

Query: 80   CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            CLSGKP PTVKWYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG+Y C ATN HGTDE
Sbjct: 8729 CLSGKPVPTVKWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGKYTCKATNCHGTDE 8788

Query: 140  TNCVVIVESEEESKEQQELAHNFLYSGEQ 168
            T CVVIVE E  + EQ ELAHNFLYSG++
Sbjct: 8789 TECVVIVEGEWVTPEQAELAHNFLYSGDR 8817

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345486445|ref|XP_003425477.1| PREDICTED: twitchin-like [Nasonia vitripennis]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/150 (68%), Positives = 124/150 (82%), Gaps = 1/150 (0%)

Query: 20   LRTRAIPKTIPAYVPEVQQ-VRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLL 78
            L  + +PK +P Y PE  Q VRRREPL   FW ET E+AP+FTFLLRPRVMQ R TCKLL
Sbjct: 8264 LNVQPLPKDVPPYRPETYQPVRRREPLPYHFWMETKEAAPDFTFLLRPRVMQARDTCKLL 8323

Query: 79   CCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138
            CCLSGKP PTVKWYK ++ELSK +Y+M+ SDGVV+MEI+DCKPEDSG+Y+CVA N HGTD
Sbjct: 8324 CCLSGKPTPTVKWYKNSKELSKFEYTMTNSDGVVTMEIVDCKPEDSGKYRCVAINCHGTD 8383

Query: 139  ETNCVVIVESEEESKEQQELAHNFLYSGEQ 168
            ET+CVVIVE   E++EQ++LAH+ L+SGE+
Sbjct: 8384 ETSCVVIVEGSGETEEQEQLAHDLLHSGER 8413

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328789682|ref|XP_003251305.1| PREDICTED: LOW QUALITY PROTEIN: twitchin [Apis mellifera]

 Score =  220 bits (560), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 101/149 (67%), Positives = 121/149 (81%)

Query: 20   LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
            L  + +PK IP Y PE+  VRRREPL    W ET+ESAP+FTFLLRPRV+QVRQTCKLLC
Sbjct: 8076 LNVQPLPKEIPKYRPELHPVRRREPLGYNVWLETIESAPSFTFLLRPRVIQVRQTCKLLC 8135

Query: 80   CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            CLSG P PTVKWYK   ELSK  Y M+++DGVV+MEIIDCKPEDSG+Y+CVATN HG DE
Sbjct: 8136 CLSGNPSPTVKWYKDREELSKYHYPMTHADGVVTMEIIDCKPEDSGKYRCVATNVHGKDE 8195

Query: 140  TNCVVIVESEEESKEQQELAHNFLYSGEQ 168
            T+CVVIVE   E++EQ +LAH+ L+SG++
Sbjct: 8196 TSCVVIVEGTGETEEQVKLAHDLLHSGDR 8224

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|263359660|gb|ACY70496.1| hypothetical protein DVIR88_6g0033 [Drosophila virilis]

 Score =  219 bits (559), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 105/149 (70%), Positives = 117/149 (78%)

Query: 20   LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
            L    +PK  P Y  E   VRRREPL  T WQE  ESAP+FTFLLRPRVMQ R TCKLLC
Sbjct: 8421 LNVHPLPKEQPKYRTESTPVRRREPLPYTLWQEESESAPSFTFLLRPRVMQARDTCKLLC 8480

Query: 80   CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            CLSGKP PTVKWYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG+Y C ATN HGTDE
Sbjct: 8481 CLSGKPVPTVKWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGKYTCKATNCHGTDE 8540

Query: 140  TNCVVIVESEEESKEQQELAHNFLYSGEQ 168
            T+CVVIVE E  + EQ ELAHNFLYSG++
Sbjct: 8541 TSCVVIVEGEWVTPEQAELAHNFLYSGDR 8569

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
FB|FBgn0005666	8933	bt "bent" [Drosophila melanoga	0.886	0.016	0.657	6.9e-48
WB|WBGene00006759	7158	unc-22 [Caenorhabditis elegans	0.607	0.014	0.388	5.8e-14
ZFIN|ZDB-GENE-030616-413	28	ttnb "titin b" [Danio rerio (t	0.5	3.0	0.364	4.6e-10
ZFIN|ZDB-GENE-050327-30	1533	zgc:113358 "zgc:113358" [Danio	0.505	0.055	0.395	6.7e-10
UNIPROTKB|F1NPK0	2952	KALRN "Uncharacterized protein	0.547	0.031	0.357	1.1e-09
RGD|1308510	1298	Mypn "myopalladin" [Rattus nor	0.583	0.075	0.323	1.5e-09
MGI|MGI:1916052	1315	Mypn "myopalladin" [Mus muscul	0.583	0.074	0.323	1.5e-09
UNIPROTKB|F5GWA6	1320	MYPN "Myopalladin" [Homo sapie	0.583	0.074	0.323	1.9e-09
UNIPROTKB|F1N0L9	1320	MYPN "Uncharacterized protein"	0.583	0.074	0.323	1.9e-09
UNIPROTKB|Q86TC9	1320	MYPN "Myopalladin" [Homo sapie	0.583	0.074	0.323	1.9e-09

FB|FBgn0005666 bt "bent" [Drosophila melanogaster (taxid:7227)]

 Score = 523 (189.2 bits), Expect = 6.9e-48, P = 6.9e-48
 Identities = 98/149 (65%), Positives = 112/149 (75%)

Query:    20 LRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC 79
             L  + +PK  P Y  E   VRRREPL  TFWQE  E+AP+FTFLLRPRVMQ R TCKLLC
Sbjct:  8399 LNVQPLPKEQPRYRTESTPVRRREPLPYTFWQEESETAPSFTFLLRPRVMQARDTCKLLC 8458

Query:    80 CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
             CLSGKP P V+WYK  RELSK +Y+M++SDGVV+MEIIDCKP DSG+Y C ATN HGTDE
Sbjct:  8459 CLSGKPVPNVRWYKDGRELSKYEYAMTHSDGVVTMEIIDCKPSDSGKYSCKATNCHGTDE 8518

Query:   140 TNCVVIVXXXXXXXXXXXLAHNFLYSGEQ 168
             T+CVVIV           LAHNFLYSG++
Sbjct:  8519 TDCVVIVEGEWVTPEQAQLAHNFLYSGDR 8547

GO:0005737 "cytoplasm" evidence=ISS

GO:0004687 "myosin light chain kinase activity" evidence=NAS

GO:0005200 "structural constituent of cytoskeleton" evidence=ISS

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;NAS

GO:0006468 "protein phosphorylation" evidence=IEA;NAS

GO:0007498 "mesoderm development" evidence=IEP

GO:0005524 "ATP binding" evidence=IEA

GO:0008307 "structural constituent of muscle" evidence=IDA

GO:0030018 "Z disc" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

WB|WBGene00006759 unc-22 [Caenorhabditis elegans (taxid:6239)]

 Score = 199 (75.1 bits), Expect = 5.8e-14, Sum P(2) = 5.8e-14
 Identities = 40/103 (38%), Positives = 59/103 (57%)

Query:    44 PLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY 103
             P ++  ++E   SAP FTF LR R++Q    CKL C L G P PT++W K    + +   
Sbjct:  6695 PPRVEEFKER-RSAPFFTFHLRNRLIQKNHQCKLTCSLQGNPNPTIEWMKDGHPVDEDRV 6753

Query:   104 SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
              +S+  GV S+EI + + +D+G Y   ATN  G D + CV+ V
Sbjct:  6754 QVSFRSGVCSLEIFNARVDDAGTYTVTATNDLGVDVSECVLTV 6796

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040027 "negative regulation of vulval development" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040015 "negative regulation of multicellular organism growth" evidence=IMP

GO:0030163 "protein catabolic process" evidence=IMP

GO:0031672 "A band" evidence=IDA

ZFIN|ZDB-GENE-030616-413 ttnb "titin b" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 4.6e-10, Sum P(2) = 4.6e-10
 Identities = 31/85 (36%), Positives = 48/85 (56%)

Query:    53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGV 111
             T++ AP  T  +R   + + Q  K    +  KP   +KWY   +++ + R Y M    GV
Sbjct: 27961 TLDHAPRVTVRMRSHRVPIGQNTKFTLNVQSKPEAHIKWYHNGQQIEESRKYRMFNMSGV 28020

Query:   112 VSMEIIDCKPEDSGEYKCVATNKHG 136
             +S++IIDC+ EDSG Y+ V TN+ G
Sbjct: 28021 LSLQIIDCQEEDSGTYRVVCTNEKG 28045

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0042626 "ATPase activity, coupled to transmembrane movement of substances" evidence=IEA

GO:0004672 "protein kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0014866 "skeletal myofibril assembly" evidence=IMP

ZFIN|ZDB-GENE-050327-30 zgc:113358 "zgc:113358" [Danio rerio (taxid:7955)]

 Score = 157 (60.3 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 34/86 (39%), Positives = 47/86 (54%)

Query:    55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVS 113
             +SAPNFT  L+      +  C + C + G P P V WY+ N  L+   +Y +S + GV S
Sbjct:  1439 DSAPNFTVPLKMHTTPEKYECYMSCAVKGNPKPHVTWYRNNISLNTNTNYYISNTCGVCS 1498

Query:   114 MEIIDCKPEDSGEYKCVATNKHGTDE 139
             M I+    +D+GEYK VA N  G  E
Sbjct:  1499 MLILRVSAKDNGEYKVVAENSVGRAE 1524

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|F1NPK0 KALRN "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
 Identities = 35/98 (35%), Positives = 52/98 (53%)

Query:    55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-----YSMSYSD 109
             E AP F  LL      +  T  L C + G+P PT+ W   ++ +   D     Y++S  D
Sbjct:  2434 EVAPEFLVLLVDITCLLGDTVMLQCKVCGRPKPTITWKGPDQNILDNDNSTATYTVSSCD 2493

Query:   110 -GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
              G + ++I +  P+DSG Y CVATN+HGT  T+  + V
Sbjct:  2494 SGELMLKICNVMPQDSGIYTCVATNEHGTASTSATIKV 2531

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA

GO:0005089 "Rho guanyl-nucleotide exchange factor activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0035023 "regulation of Rho protein signal transduction" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

RGD|1308510 Mypn "myopalladin" [Rattus norvegicus (taxid:10116)]

 Score = 153 (58.9 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 32/99 (32%), Positives = 52/99 (52%)

Query:    49 FWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSY 107
             +++E +   P FT  LR R +      +L C + G PPP V+WY   +EL    D  +  
Sbjct:   253 YYEEPLGQPPRFTQKLRSREVPEGSRVQLDCIVVGIPPPQVRWYCEGKELENSPDIHIVQ 312

Query:   108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             +  + S+ I +   ED+G Y C A+N +GTD T+  + +
Sbjct:   313 AGNLHSLTIAEAFEEDTGRYSCFASNIYGTDSTSAEIYI 351

GO:0005634 "nucleus" evidence=IDA

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0015630 "microtubule cytoskeleton" evidence=IEA;ISO

GO:0017124 "SH3 domain binding" evidence=IEA;ISO

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0045214 "sarcomere organization" evidence=IEA;ISO

GO:0051371 "muscle alpha-actinin binding" evidence=IEA;ISO

MGI|MGI:1916052 Mypn "myopalladin" [Mus musculus (taxid:10090)]

 Score = 153 (58.9 bits), Expect = 1.5e-09, P = 1.5e-09
 Identities = 32/99 (32%), Positives = 52/99 (52%)

Query:    49 FWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSY 107
             +++E +   P FT  LR R +      +L C + G PPP V+WY   +EL    D  +  
Sbjct:   258 YYEEPLGQPPRFTQKLRSREVPEGSRVQLDCIVVGIPPPQVRWYCEGKELENSPDIHIVQ 317

Query:   108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             +  + S+ I +   ED+G Y C A+N +GTD T+  + +
Sbjct:   318 AGNLHSLTIAEAFEEDTGRYSCFASNIYGTDSTSAEIYI 356

GO:0003779 "actin binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=ISO

GO:0017124 "SH3 domain binding" evidence=ISO

GO:0030018 "Z disc" evidence=ISO;IDA

GO:0031674 "I band" evidence=ISO;IDA

GO:0045214 "sarcomere organization" evidence=ISO

GO:0051371 "muscle alpha-actinin binding" evidence=ISO

UNIPROTKB|F5GWA6 MYPN "Myopalladin" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 32/99 (32%), Positives = 52/99 (52%)

Query:    49 FWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSY 107
             +++E +   P FT  LR R +      +L C + G PPP V+WY   +EL    D  +  
Sbjct:   260 YYEEPLGQPPRFTQKLRSREVPEGTRVQLDCIVVGIPPPQVRWYCEGKELENSPDIHIVQ 319

Query:   108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             +  + S+ I +   ED+G Y C A+N +GTD T+  + +
Sbjct:   320 AGNLHSLTIAEAFEEDTGRYSCFASNIYGTDSTSAEIYI 358

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|F1N0L9 MYPN "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 32/99 (32%), Positives = 52/99 (52%)

Query:    49 FWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSY 107
             +++E +   P FT  LR R +      +L C + G PPP V+WY   +EL    D  +  
Sbjct:   260 YYEEPLGQPPRFTQKLRSREVPEGTRVQLDCIVVGIPPPQVRWYCEGKELENSPDIHIIQ 319

Query:   108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             +  + S+ I +   ED+G Y C A+N +GTD T+  + +
Sbjct:   320 AGNLHSLTIAEAFEEDTGRYSCFASNIYGTDSTSAEIYI 358

GO:0051371 "muscle alpha-actinin binding" evidence=IEA

GO:0045214 "sarcomere organization" evidence=IEA

GO:0030018 "Z disc" evidence=IEA

GO:0017124 "SH3 domain binding" evidence=IEA

GO:0015630 "microtubule cytoskeleton" evidence=IEA

UNIPROTKB|Q86TC9 MYPN "Myopalladin" [Homo sapiens (taxid:9606)]

 Score = 152 (58.6 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 32/99 (32%), Positives = 52/99 (52%)

Query:    49 FWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSY 107
             +++E +   P FT  LR R +      +L C + G PPP V+WY   +EL    D  +  
Sbjct:   260 YYEEPLGQPPRFTQKLRSREVPEGTRVQLDCIVVGIPPPQVRWYCEGKELENSPDIHIVQ 319

Query:   108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             +  + S+ I +   ED+G Y C A+N +GTD T+  + +
Sbjct:   320 AGNLHSLTIAEAFEEDTGRYSCFASNIYGTDSTSAEIYI 358

GO:0003779 "actin binding" evidence=IEA

GO:0008092 "cytoskeletal protein binding" evidence=IPI

GO:0017124 "SH3 domain binding" evidence=IPI

GO:0051371 "muscle alpha-actinin binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0030018 "Z disc" evidence=IDA

GO:0031674 "I band" evidence=IDA

GO:0045214 "sarcomere organization" evidence=IMP

GO:0005634 "nucleus" evidence=ISS

GO:0015630 "microtubule cytoskeleton" evidence=IDA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	2e-23
smart00410	85	smart00410, IG_like, Immunoglobulin like	4e-14
smart00409	85	smart00409, IG, Immunoglobulin	4e-14
cd00096	74	cd00096, Ig, Immunoglobulin domain	9e-13
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-11
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	3e-11
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-09
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	5e-09
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	6e-09
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	5e-08
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-07
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	1e-07
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	2e-07
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	1e-06
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	2e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	4e-06
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	6e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	6e-06
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	7e-06
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	9e-06
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	1e-05
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	2e-05
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	2e-05
cd04977	92	cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig	2e-05
cd05723	71	cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-	3e-05
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	4e-05
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	4e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	5e-05
cd05765	81	cd05765, Ig_3, Subgroup of the immunoglobulin (Ig)	6e-05
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	9e-05
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	1e-04
cd05733	77	cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig	1e-04
cd05849	93	cd05849, Ig1_Contactin-1, First Ig domain of conta	1e-04
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	1e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	2e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-04
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	3e-04
cd05897	95	cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig	4e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	4e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	6e-04
cd05852	73	cd05852, Ig5_Contactin-1, Fifth Ig domain of conta	8e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	8e-04
cd05867	76	cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (I	0.001
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	0.001
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.001
cd05894	86	cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) doma	0.001
cd05864	70	cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-l	0.001
pfam00047	62	pfam00047, ig, Immunoglobulin domain	0.002
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	0.002
cd05744	75	cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-l	0.002
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	0.002
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.003
cd05722	95	cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-l	0.003

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 87.7 bits (218), Expect = 2e-23
 Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEI 116
           P FT   +   +Q  ++ +  C ++G P PTV W+K  + L S   + ++Y  G  ++ I
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTLTI 60

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            + +P+D G+Y CVATN  G  E +  + V
Sbjct: 61  SNVQPDDEGKYTCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 63.7 bits (155), Expect = 4e-14
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 76  KLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
            L C  SG PPP V WYK   +L      +S+S S    ++ I +  PEDSG Y C ATN
Sbjct: 13  TLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATN 72

Query: 134 KHGTDETNCVVIV 146
             G+  +   + V
Sbjct: 73  SSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 63.7 bits (155), Expect = 4e-14
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 2/73 (2%)

Query: 76  KLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
            L C  SG PPP V WYK   +L      +S+S S    ++ I +  PEDSG Y C ATN
Sbjct: 13  TLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATN 72

Query: 134 KHGTDETNCVVIV 146
             G+  +   + V
Sbjct: 73  SSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 59.8 bits (144), Expect = 9e-13
 Identities = 26/71 (36%), Positives = 34/71 (47%), Gaps = 5/71 (7%)

Query: 76  KLLCCLSGKPPPTVKWYKGNRELS-----KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
            L C  SG PPPT+ W K  + L      +   S   S G  ++ I +   EDSG Y CV
Sbjct: 2   TLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 131 ATNKHGTDETN 141
           A+N  GT   +
Sbjct: 62  ASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 56.3 bits (136), Expect = 2e-11
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 3/64 (4%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
           Q+  L C   G P P + W K  + L + +  ++      ++ I     EDSG Y CVA 
Sbjct: 3   QSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASGS---TLTIKSVSLEDSGLYTCVAE 59

Query: 133 NKHG 136
           N  G
Sbjct: 60  NSAG 63

Length = 63

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 55.7 bits (135), Expect = 3e-11
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 1/67 (1%)

Query: 81  LSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
           +SG+P PTV W K  + L       +  +    S+ I + +  DSG+Y     N  G   
Sbjct: 8   ISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKS 67

Query: 140 TNCVVIV 146
               V V
Sbjct: 68  ATINVKV 74

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 50.8 bits (122), Expect = 3e-09
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 74  TCKLLCCLSGKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYKC 129
           T +L C  SG P PT+ W K  +   K      Y +      + +E     P DSG+Y C
Sbjct: 11  TVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILE--SVVPSDSGKYTC 68

Query: 130 VATNKHGT 137
           +  NK+G+
Sbjct: 69  IVENKYGS 76

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 50.2 bits (120), Expect = 5e-09
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 6/68 (8%)

Query: 74  TCKLLCCLSGKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYKC 129
           T K  C  +G P PT++W K  +E  +      Y +      + ME +   P D G Y C
Sbjct: 11  TVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESV--VPSDKGNYTC 68

Query: 130 VATNKHGT 137
           V  N++G+
Sbjct: 69  VVENEYGS 76

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 50.6 bits (121), Expect = 6e-09
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDG-VVSMEIIDCKPEDSGEYKCV 130
           +T  L C + G P P V W K ++ L+  D Y++    G   S+ I     EDSG+Y  V
Sbjct: 17  KTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIV 76

Query: 131 ATNKHGTDETNCVVIV 146
             NK+G +  +  V V
Sbjct: 77  VKNKYGGETVDVTVSV 92

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 47.6 bits (113), Expect = 5e-08
 Identities = 21/59 (35%), Positives = 30/59 (50%), Gaps = 3/59 (5%)

Query: 79  CCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
           C  SG P P  +W K  + L+  +  +    G + +  +     DSG Y+CVA NKHGT
Sbjct: 21  CKASGNPRPAYRWLKNGQPLASEN-RIEVEAGDLRITKLSL--SDSGMYQCVAENKHGT 76

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 46.2 bits (110), Expect = 1e-07
 Identities = 22/71 (30%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 77  LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
           L C   G P P + W K   EL          +    ++I +   ED GEY+C A+N  G
Sbjct: 3   LECIAEGLPTPEISWIKIGGELPADRTKFENFNKT--LKIDNVSEEDDGEYRCTASNSLG 60

Query: 137 TDETNCVVIVE 147
           +      V VE
Sbjct: 61  SARHTISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 46.8 bits (111), Expect = 1e-07
 Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDG-VVSMEIIDCKPEDSGEYKCV 130
           +T  L C + G P P V W+K ++++   + YS+    G   S+ I     EDSG+Y   
Sbjct: 17  KTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSIN 76

Query: 131 ATNKHGTDETNCVVIV 146
             NK+G +  +  V V
Sbjct: 77  VKNKYGGETVDVTVSV 92

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 46.5 bits (110), Expect = 2e-07
 Identities = 22/67 (32%), Positives = 31/67 (46%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
           Q+  L C   G P PT+ W K    +   +   S+++    M I+D    D  EY C+A 
Sbjct: 19  QSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAE 78

Query: 133 NKHGTDE 139
           NK G  E
Sbjct: 79  NKAGEQE 85

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 43.7 bits (103), Expect = 1e-06
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 4/63 (6%)

Query: 82  SGKPPPTVKWYKGNRELSK----RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
           S  P    KW+K  +EL++    R+  +        ++I   K  DSGEY CV  N  G 
Sbjct: 9   SEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGN 68

Query: 138 DET 140
           D  
Sbjct: 69  DTV 71

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 43.4 bits (102), Expect = 2e-06
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 2/74 (2%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
           QT   LC   G P P + W KG  +LS     +  S G  ++ I      D G+Y+C A 
Sbjct: 3   QTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG--TLRISRVALHDQGQYECQAV 60

Query: 133 NKHGTDETNCVVIV 146
           N  G+  T   + V
Sbjct: 61  NIVGSQRTVAQLTV 74

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 42.4 bits (100), Expect = 4e-06
 Identities = 22/68 (32%), Positives = 30/68 (44%), Gaps = 3/68 (4%)

Query: 79  CCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138
           C + G P PTV W K + EL K    +       S++I +    D G Y C A N  G  
Sbjct: 5   CEVGGDPVPTVLWRKEDGELPKGRAEILDDK---SLKIRNVTAGDEGSYTCEAENMVGKI 61

Query: 139 ETNCVVIV 146
           E +  + V
Sbjct: 62  EASASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 41.8 bits (98), Expect = 6e-06
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 76  KLLCCLSGKPPPTVKWYK--GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
           +L C  +G P P + W K  G    + R+  M          I+D K ED+G Y C A N
Sbjct: 2   RLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDDVFFIVDVKIEDTGVYSCTAQN 61

Query: 134 KHGTDETNCVVIV 146
             G+   N  + V
Sbjct: 62  TAGSISANATLTV 74

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 42.5 bits (100), Expect = 6e-06
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 3/75 (4%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
           Q   L C   G P P +KW K +  +      +S S  V  ++I + + ED G Y+C A 
Sbjct: 17  QNVTLECFALGNPVPQIKWRKVDGSMPSS-AEISMSGAV--LKIPNIQFEDEGTYECEAE 73

Query: 133 NKHGTDETNCVVIVE 147
           N  G D     + V+
Sbjct: 74  NIKGKDTHQGRIYVQ 88

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 42.3 bits (99), Expect = 7e-06
 Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 12/90 (13%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG------- 110
           P  T++     M++ +   L C  SG P P++ W    R +S  + ++   DG       
Sbjct: 3   PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTL---DGHIVVRSH 59

Query: 111 --VVSMEIIDCKPEDSGEYKCVATNKHGTD 138
             V S+ +   +  D+GEY C A+N  G D
Sbjct: 60  ARVSSLTLKYIQYTDAGEYLCTASNTIGQD 89

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 41.2 bits (97), Expect = 9e-06
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 3/59 (5%)

Query: 76  KLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134
           +L   +   PPP ++WYK  + +S++  + +   G  S+ I D   ED+G Y  V TNK
Sbjct: 2   RLPVKVKAYPPPEIQWYKNGKLISEK--NRTKKSG-HSLTIKDVTEEDAGNYTVVLTNK 57

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 41.0 bits (96), Expect = 1e-05
 Identities = 25/68 (36%), Positives = 31/68 (45%), Gaps = 5/68 (7%)

Query: 77  LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
           L C   G P P VKW KG  EL+K D  M     V  +E+ +    +S  Y CVA +  G
Sbjct: 6   LTCVAVGAPMPYVKWMKGGEELTKED-EMPVGRNV--LELTNIY--ESANYTCVAISSLG 60

Query: 137 TDETNCVV 144
             E    V
Sbjct: 61  MIEATAQV 68

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 19/71 (26%), Positives = 31/71 (43%), Gaps = 8/71 (11%)

Query: 83  GKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDC----KPE--DSGEYKCVATNK 134
           G P PT+ WY     L++ DY  +  + +     E   C     P   ++G Y  VA+N+
Sbjct: 9   GNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNE 68

Query: 135 HGTDETNCVVI 145
           +G D  +    
Sbjct: 69  YGQDSKSISAH 79

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 40.6 bits (95), Expect = 2e-05
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 71  VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
           V  + +L C  SG P P + W K N+ L+  +   S      ++ + + KPEDSG+Y C 
Sbjct: 8   VGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESRKKKW-TLSLKNLKPEDSGKYTCH 66

Query: 131 ATNKHG 136
            +N+ G
Sbjct: 67  VSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|143178 cd04977, Ig1_NCAM-1_like, First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

 Score = 41.0 bits (96), Expect = 2e-05
 Identities = 24/80 (30%), Positives = 44/80 (55%), Gaps = 4/80 (5%)

Query: 69  MQVRQTCKLLCCLSGKPPPTVKWY--KGNRELSKRDYSMSYSDGVVS-MEIIDCKPEDSG 125
           + V ++   LC + G+P   + W+   G + ++++  S+  +D V S + I +   ED+G
Sbjct: 12  ISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAG 70

Query: 126 EYKCVATNKHGTDETNCVVI 145
            YKCVAT+  GT+    V +
Sbjct: 71  IYKCVATDAKGTESEATVNL 90

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 92

>gnl|CDD|212460 cd05723, Ig4_Neogenin, Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 39.9 bits (93), Expect = 3e-05
 Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)

Query: 79  CCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138
           C ++GKP PTVKW K    +   DY     +   +++++     D G Y+C+A N  G  
Sbjct: 6   CEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH--NLQVLGLVKSDEGFYQCIAENDVGNV 63

Query: 139 ETNCVVIV 146
           +    +I+
Sbjct: 64  QAGAQLII 71

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 71

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 40.2 bits (94), Expect = 4e-05
 Identities = 27/90 (30%), Positives = 41/90 (45%), Gaps = 13/90 (14%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG------- 110
           P  T+L     +++ Q   L C   G P P + W +  R  S+ D S+   DG       
Sbjct: 3   PKITYLENQTAVELEQI-TLTCEAEGDPIPEITWRRATRNFSEGDKSL---DGRIVVRGH 58

Query: 111 --VVSMEIIDCKPEDSGEYKCVATNKHGTD 138
             V S+ + D +  D+G Y C A+N+ G D
Sbjct: 59  ARVSSLTLKDVQLTDAGRYDCEASNRIGGD 88

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 40.0 bits (93), Expect = 4e-05
 Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 5/76 (6%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 131
           Q   L C   G P P ++W K    + +  + SMS   G V ++I + +PED G Y+C A
Sbjct: 17  QNVTLECFALGNPVPVIRWRKILEPMPATAEISMS---GAV-LKIFNIQPEDEGTYECEA 72

Query: 132 TNKHGTDETNCVVIVE 147
            N  G D+    V V+
Sbjct: 73  ENIKGKDKHQARVYVQ 88

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 39.3 bits (92), Expect = 5e-05
 Identities = 16/64 (25%), Positives = 28/64 (43%)

Query: 74  TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
           T +L C   G P PT+ W      + +            ++ + + +P D+  Y+C A+N
Sbjct: 3   TGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGGTLILSNVQPNDTAVYQCNASN 62

Query: 134 KHGT 137
            HG 
Sbjct: 63  VHGY 66

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143242 cd05765, Ig_3, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 39.4 bits (92), Expect = 6e-05
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 8/76 (10%)

Query: 73  QTCKLLCCLSGKPPPTVKWYK---GNRELSKRDYSMSYSDGVVS----MEIIDCKPEDSG 125
           +T    C ++G+PPP + W K   G   L  R   +   + VV+    + I + +P+D+G
Sbjct: 2   ETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHV-RGNVVVTNIGQLVIYNAQPQDAG 60

Query: 126 EYKCVATNKHGTDETN 141
            Y C A N  G    N
Sbjct: 61  LYTCTARNSGGLLRAN 76

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 81

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 39.0 bits (91), Expect = 9e-05
 Identities = 24/75 (32%), Positives = 30/75 (40%), Gaps = 11/75 (14%)

Query: 64  LRPRVMQVRQTCKLL--CCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP 121
           L P    V +   +   C   G PPP   WYK    LS    +  ++  V          
Sbjct: 4   LTPSPTVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSS-QNGFFTPNVS--------A 54

Query: 122 EDSGEYKCVATNKHG 136
           EDSG Y CVA+N  G
Sbjct: 55  EDSGTYTCVASNGGG 69

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 38.6 bits (90), Expect = 1e-04
 Identities = 23/70 (32%), Positives = 30/70 (42%), Gaps = 6/70 (8%)

Query: 79  CCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
           C     P PT+ W KG   L  S R       DG  S+EI++    D G+Y C A N  G
Sbjct: 8   CKPKAAPKPTISWSKGTELLTNSSRICIWP--DG--SLEILNVTKSDEGKYTCFAENFFG 63

Query: 137 TDETNCVVIV 146
              +   + V
Sbjct: 64  KANSTGSLSV 73

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143210 cd05733, Ig6_L1-CAM_like, Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

 Score = 38.5 bits (90), Expect = 1e-04
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 5/73 (6%)

Query: 79  CCLSGKPPPTVKWYKGNRE---LSKRDYSMSYSDGVVSMEIID-CKPED-SGEYKCVATN 133
           C   G PPPT  W +             +M    G + ++ ++  + ED  GEY+C A+N
Sbjct: 5   CEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASN 64

Query: 134 KHGTDETNCVVIV 146
           + GT  +N + + 
Sbjct: 65  ELGTAISNEIHLR 77

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin. Length = 77

>gnl|CDD|143257 cd05849, Ig1_Contactin-1, First Ig domain of contactin-1

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)

Query: 79  CCLSGKPPPTVKWYKGNRE--LSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
           C     P P  KW K N +  L+   YSM   + V++      K +D+G Y C+ +N +G
Sbjct: 26  CRARANPFPIYKWRKNNLDIDLTNDRYSMVGGNLVINNPD---KYKDAGRYVCIVSNIYG 82

Query: 137 T 137
            
Sbjct: 83  K 83

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 93

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 38.4 bits (89), Expect = 1e-04
 Identities = 20/61 (32%), Positives = 30/61 (49%)

Query: 77  LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
           L C + G P PT +W++    LS    + S S    ++ +    P+DSG Y C A N  G
Sbjct: 3   LRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFG 62

Query: 137 T 137
           +
Sbjct: 63  S 63

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 2/71 (2%)

Query: 77  LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
           L C   G P P V W + +  LS        ++   ++++ +    D GEY C A N  G
Sbjct: 3   LECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNK--TLQLDNVLESDDGEYVCTAENSEG 60

Query: 137 TDETNCVVIVE 147
           +   +  V VE
Sbjct: 61  SARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 37.8 bits (88), Expect = 3e-04
 Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 6/64 (9%)

Query: 77  LLCCLSGKPPPTVKWYKGNRE---LSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
           L C   G PPPT +W     E        YS+   + V+S      K +D+G Y+C+A+N
Sbjct: 24  LNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGGNLVISNPS---KAKDAGRYQCLASN 80

Query: 134 KHGT 137
             GT
Sbjct: 81  IVGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 7/62 (11%)

Query: 83  GKPPPTVKWYKGNRELSKRDYSMSY---SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
           G P PTV W K  + L     +       DG  ++ I + +  D G YKCVATN  G  E
Sbjct: 23  GHPEPTVSWRKDGQPL--NLDNERVRIVDDG--NLLIAEARKSDEGTYKCVATNMVGERE 78

Query: 140 TN 141
           + 
Sbjct: 79  SA 80

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143305 cd05897, Ig2_IL1R2_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

 Score = 37.4 bits (87), Expect = 4e-04
 Identities = 17/59 (28%), Positives = 25/59 (42%)

Query: 89  VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           ++WYK +  L K +       G   + IID    DSG Y C     H   + N   I++
Sbjct: 32  LQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGKKYNITRIIK 90

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. Length = 95

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 37.0 bits (85), Expect = 4e-04
 Identities = 18/58 (31%), Positives = 25/58 (43%), Gaps = 5/58 (8%)

Query: 78  LCCLS--GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
           L C +  G PPPT+ WY+                   ++ +     EDSG Y CVA+N
Sbjct: 20  LTCSAEGGPPPPTISWYRNGSISGGSGGL---GSSGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 36.3 bits (84), Expect = 6e-04
 Identities = 17/65 (26%), Positives = 32/65 (49%), Gaps = 3/65 (4%)

Query: 73  QTCKLLCCLSGKPPPTVKW-YKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 131
           Q   L C   G P P + W     + +S    ++ Y +G  +++I+    +D+G + C+A
Sbjct: 2   QRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG--TLDILITTVKDTGSFTCIA 59

Query: 132 TNKHG 136
           +N  G
Sbjct: 60  SNAAG 64

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143260 cd05852, Ig5_Contactin-1, Fifth Ig domain of contactin-1

 Score = 36.2 bits (83), Expect = 8e-04
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 2/68 (2%)

Query: 79  CCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD 138
           C     P P   W KG   L        + DG  S+EI++    D G Y C A N  G  
Sbjct: 8   CKPKAAPKPKFSWSKGTELLVNNSRISIWDDG--SLEILNITKLDEGSYTCFAENNRGKA 65

Query: 139 ETNCVVIV 146
            +  V+ V
Sbjct: 66  NSTGVLSV 73

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 36.6 bits (84), Expect = 8e-04
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 3/82 (3%)

Query: 61  TFLLRPRVMQVRQ--TCKLLCCLSGKPPPTVKWY-KGNRELSKRDYSMSYSDGVVSMEII 117
           T L +PR + V +  + +  C + G+P PTV W  +G   +S + + ++ ++   + EI 
Sbjct: 5   TILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEIS 64

Query: 118 DCKPEDSGEYKCVATNKHGTDE 139
             +  D G Y  V  N  G  E
Sbjct: 65  KVQMSDEGNYTVVVENSEGKQE 86

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143275 cd05867, Ig4_L1-CAM_like, Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 17/64 (26%), Positives = 29/64 (45%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
           +T +L C + G P P + W      +   D          ++ + D +P D+  Y+C A 
Sbjct: 2   ETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSGALILTDVQPSDTAVYQCEAR 61

Query: 133 NKHG 136
           N+HG
Sbjct: 62  NRHG 65

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 76

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 35.8 bits (82), Expect = 0.001
 Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 16/69 (23%)

Query: 77  LLCCLSGKPPPTVKWYK--------GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYK 128
           +LC  SG P P + W+K         N  + +        +        + +  D G+Y+
Sbjct: 3   MLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSGALQIE--------NSEESDQGKYE 54

Query: 129 CVATNKHGT 137
           CVATN  GT
Sbjct: 55  CVATNSAGT 63

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 35.5 bits (82), Expect = 0.001
 Identities = 21/67 (31%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 73  QTCKLLCCLSGKPPPTVKWYK--GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
           +T +  C  +G P P + W    G+   S R    S   G  ++ I D K  D G Y C 
Sbjct: 2   ETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEG-GYGTLTIRDVKESDQGAYTCE 60

Query: 131 ATNKHGT 137
           A N  G 
Sbjct: 61  AINTRGM 67

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143302 cd05894, Ig_C5_MyBP-C, C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

 Score = 35.6 bits (82), Expect = 0.001
 Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 6/70 (8%)

Query: 81  LSGKPPPTVKWYKGNR---ELSKRDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHG 136
           +SG+P PTV W +G++   E   R    SY D  +S  +I+  + ED G Y    TN  G
Sbjct: 19  ISGEPAPTVTWSRGDKAFTETEGRVRVESYKD--LSSFVIEGAEREDEGVYTITVTNPVG 76

Query: 137 TDETNCVVIV 146
            D  +  V V
Sbjct: 77  EDHASLFVKV 86

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain. Length = 86

>gnl|CDD|143272 cd05864, Ig2_VEGFR-2, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 83  GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134
           G PPP VKWYK  + +       ++  GV  + I +   +D+G Y  V TN 
Sbjct: 9   GYPPPEVKWYKNGQLIVLN---HTFKRGVH-LTIYEVTEKDAGNYTVVLTNP 56

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. Length = 70

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 76  KLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV--SMEIIDCKPEDSGEYKCVA 131
            L C +SG P   V W+K  + L +     +  + V   ++ I +  PEDSG Y CV 
Sbjct: 5   TLTCSVSGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYTCVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 24/62 (38%), Positives = 32/62 (51%), Gaps = 6/62 (9%)

Query: 79  CCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIIDCKPE--DSGEYKCVATNKH 135
           C   G P PT +W +   E+  + DY  S  DG +   II    E  DSG Y+C+ATN  
Sbjct: 26  CEARGNPVPTYRWLRNGTEIDTESDYRYSLIDGNL---IISNPSEVKDSGRYQCLATNSI 82

Query: 136 GT 137
           G+
Sbjct: 83  GS 84

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143221 cd05744, Ig_Myotilin_C_like, Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

 Score = 35.2 bits (81), Expect = 0.002
 Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 3/64 (4%)

Query: 76  KLLCCLSGKPPPTVKWYKGNRELSKRDYSMS-YSD--GVVSMEIIDCKPEDSGEYKCVAT 132
           +L C +S  PPP + W K N  L+     +S Y D  G + + I +   ED+G Y   A 
Sbjct: 2   RLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAV 61

Query: 133 NKHG 136
           N+ G
Sbjct: 62  NEAG 65

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP). Length = 75

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 35.3 bits (81), Expect = 0.002
 Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 77  LLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
           L C   G P P + W K   +++ K    ++       + I + + ED+G Y C+A N+ 
Sbjct: 3   LRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEA 62

Query: 136 GTDETNCVVIVE 147
           G DE    + VE
Sbjct: 63  GVDEDISSLFVE 74

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 34.5 bits (79), Expect = 0.003
 Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 76  KLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
           ++ C   G P PT+ W K   ++++        +G ++  I D    D G Y+CVA N  
Sbjct: 2   QIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEGYLA--IRDVGVADQGRYECVARNTI 59

Query: 136 GTDETNCVV 144
           G    + V+
Sbjct: 60  GYASVSMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143199 cd05722, Ig1_Neogenin, First immunoglobulin (Ig)-like domain in neogenin and similar proteins

 Score = 35.1 bits (81), Expect = 0.003
 Identities = 23/80 (28%), Positives = 34/80 (42%), Gaps = 7/80 (8%)

Query: 62  FLLRPR-VMQVRQTCKLL-CCLSGKPPPTVKWYKGNR--ELSKRDYSMSYSDG---VVSM 114
           FL  P  ++ VR    +L C   G+PPP ++W K      L   +      +G   + S+
Sbjct: 2   FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNGSLLITSV 61

Query: 115 EIIDCKPEDSGEYKCVATNK 134
                   D G Y+CVA N 
Sbjct: 62  VHSKHNKPDEGFYQCVAQND 81

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain. Length = 95

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.86
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.81
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.78
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.76
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.76
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.76
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.75
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.75
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.74
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.74
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.74
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.74
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.74
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.73
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.73
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.72
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.72
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.71
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.71
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.71
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.71
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.7
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.7
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.7
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.69
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.69
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.69
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.69
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.69
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.69
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.69
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.68
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.68
KOG3513|consensus	1051		99.68
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.68
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.67
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.67
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.67
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.67
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.66
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.66
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.66
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.66
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.65
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.65
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.65
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.64
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.64
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.64
KOG4194|consensus	873		99.64
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.63
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.63
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.62
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.62
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.62
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.61
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.61
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.61
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.6
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.6
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.6
KOG3513|consensus	1051		99.6
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.59
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.58
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.58
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.57
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.57
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.57
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.57
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.56
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.56
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.55
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.52
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.5
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.47
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.47
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.47
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.47
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.46
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.46
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.46
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.46
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.45
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.44
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.43
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.43
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.42
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.42
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.41
PHA02826	227	IL-1 receptor-like protein; Provisional	99.4
KOG4221|consensus	1381		99.36
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.3
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.27
smart00409	86	IG Immunoglobulin.	99.27
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.26
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.25
PHA02785	326	IL-beta-binding protein; Provisional	99.25
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.24
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.24
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.23
KOG4222|consensus	1281		99.21
KOG4194|consensus	873		99.2
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.18
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.18
PHA02785	326	IL-beta-binding protein; Provisional	99.17
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.16
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.16
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.12
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.1
KOG4221|consensus	1381		99.03
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.02
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.02
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.99
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.97
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.97
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.93
PHA02826	227	IL-1 receptor-like protein; Provisional	98.9
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.9
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.9
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.89
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.88
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.83
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.83
KOG4222|consensus	1281		98.83
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.8
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.79
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.72
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.72
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.7
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.69
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.68
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.66
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.65
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.63
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.6
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.57
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.53
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.5
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.49
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.47
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.45
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.43
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.43
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.42
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.42
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.42
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.4
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.37
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.36
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.36
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.3
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.3
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.29
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.29
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.28
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.27
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.25
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.24
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.19
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.17
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.08
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.04
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.0
PHA03376	221	BARF1; Provisional	97.94
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.85
smart00406	81	IGv Immunoglobulin V-Type.	97.8
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.75
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.72
smart00407	75	IGc1 Immunoglobulin C-Type.	97.67
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.67
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.61
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.56
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.56
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.53
cd05770	93	IgC_beta2m Class I major histocompatibility comple	97.5
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	97.44
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.31
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.19
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.06
PHA02633	63	hypothetical protein; Provisional	97.06
KOG3515|consensus	741		97.03
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.99
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.92
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.87
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.85
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.73
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.72
KOG1480|consensus	909		96.59
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.58
KOG4597|consensus	560		96.46
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.27
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.18
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.09
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	95.95
PHA02982	251	hypothetical protein; Provisional	95.91
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.75
PHA03042	286	CD47-like protein; Provisional	95.42
PHA03376	221	BARF1; Provisional	94.96
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	94.54
KOG3515|consensus	741		94.43
PHA03271	490	envelope glycoprotein C; Provisional	92.74
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	90.96
PHA02914	500	Immunoglobulin-like domain protein; Provisional	90.01
PHA03269	566	envelope glycoprotein C; Provisional	89.15
PHA02865	338	MHC-like TNF binding protein; Provisional	86.56
PHA03052	69	Hypothetical protein; Provisional	84.98
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	82.62
PHA02633	63	hypothetical protein; Provisional	81.67

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.86  E-value=2.9e-20  Score=114.40  Aligned_cols=96  Identities=17%  Similarity=0.369  Sum_probs=84.7

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      |.|...+.+..+..|+.+.|.|.+.|.|.|.+.|+|++..+.. .++.+......+.|.|.++...|+|.|+|.|.|..|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~~~D~G~Ytc~a~N~~G   80 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIENTENSSKLTITEGQQEHCGCYTLEVENKLG   80 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEecCCeeEEEECCCChhhCEEEEEEEEcCCC
Confidence            5677788889999999999999999999999999999999865 344444445566899999999999999999999999


Q ss_pred             ceEEEEEEEEeeCCCch
Q psy12421        137 TDETNCVVIVESEEESK  153 (168)
Q Consensus       137 ~~~~~~~l~v~~~p~~~  153 (168)
                      ...+++.|.|.+.|.+|
T Consensus        81 ~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          81 SRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             ceeEEEEEEEecCCCCC
Confidence            99999999999988765

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.81  E-value=1.1e-18  Score=105.27  Aligned_cols=88  Identities=26%  Similarity=0.501  Sum_probs=75.8

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .+...++  .|.|.++..+|+|.|+|.|.|..|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~-~~~~~~~--~L~I~~v~~~D~G~Y~C~A~N~~G   77 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATA-EISMSGA--VLKIFNIQPEDEGTYECEAENIKG   77 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCC-EEecCCC--EEEECcCChhhCEEEEEEEEcCCC
Confidence            5888889999999999999999999999999999999987765432 2333344  799999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy12421        137 TDETNCVVIVE  147 (168)
Q Consensus       137 ~~~~~~~l~v~  147 (168)
                      .....+.|.|.
T Consensus        78 ~~~~~~~l~V~   88 (88)
T cd05851          78 KDKHQARVYVQ   88 (88)
T ss_pred             ceEEEEEEEEC
Confidence            99998888763

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.78  E-value=9.9e-18  Score=102.06  Aligned_cols=89  Identities=19%  Similarity=0.392  Sum_probs=76.3

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+........|.|.++..+|+|.|+|.|.|.
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   81 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITSTEYKSTFEISKVQMSDEGNYTVVVENS   81 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEEcCCeeEEEECCCCcccCEeEEEEEEcC
Confidence            3688888888999999999999999999999999999999887653 444444444558999999999999999999999


Q ss_pred             CcceEEEEEE
Q psy12421        135 HGTDETNCVV  144 (168)
Q Consensus       135 ~g~~~~~~~l  144 (168)
                      .|.....+.|
T Consensus        82 ~G~~~~~~~l   91 (92)
T cd05747          82 EGKQEAQFTL   91 (92)
T ss_pred             CCCEeEEEEe
Confidence            9998887765

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.76  E-value=4.6e-17  Score=97.77  Aligned_cols=81  Identities=27%  Similarity=0.440  Sum_probs=68.9

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+...  ++.+........|.|.++...|+|.|+|.|.|..|.....+.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~   83 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLF   83 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEE
Confidence            356788999999999999999999999999988642  344444444568999999999999999999999999998887


Q ss_pred             EEE
Q psy12421        144 VIV  146 (168)
Q Consensus       144 l~v  146 (168)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05894          84 VKV   86 (86)
T ss_pred             EEC
Confidence            764

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.76  E-value=1.3e-17  Score=97.42  Aligned_cols=74  Identities=32%  Similarity=0.574  Sum_probs=63.3

Q ss_pred             cCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +|+++.|.|.+.|.|.|.+.|+|++..+...........+  .|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVLSSG--TLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEccCC--eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            5889999999999999999999999988654433333444  7999999999999999999999999998888764

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.76  E-value=5.7e-17  Score=98.19  Aligned_cols=89  Identities=35%  Similarity=0.660  Sum_probs=79.7

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      |.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+........|.|.++...|+|.|.|.+.|..|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n~~g   80 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESDGGSSSLTIKNVTREDAGTYTCVASNSSG   80 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEETTEEEEEESSESGGGSEEEEEEEEETTE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecccceeEEccCCCChhhCEEEEEEEEECCC
Confidence            6788888899999999999999999999999999999998876 455666666788999999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy12421        137 TDETNCVVIV  146 (168)
Q Consensus       137 ~~~~~~~l~v  146 (168)
                      .....+.|.|
T Consensus        81 ~~~~~~~l~V   90 (90)
T PF07679_consen   81 EATASVNLTV   90 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEC
Confidence            9999988865

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.75  E-value=7.1e-17  Score=98.87  Aligned_cols=83  Identities=28%  Similarity=0.497  Sum_probs=68.5

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      +..+..|+++.|.|.+.|.|.|.+.|++++..+...............|.|.++...|.|.|+|.|.|..|.....+.|.
T Consensus        12 ~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~   91 (95)
T cd05730          12 NATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHLK   91 (95)
T ss_pred             ceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEeCCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEE
Confidence            45688999999999999999999999999998865422222222223699999999999999999999999999999988


Q ss_pred             Eee
Q psy12421        146 VES  148 (168)
Q Consensus       146 v~~  148 (168)
                      |..
T Consensus        92 V~~   94 (95)
T cd05730          92 VFA   94 (95)
T ss_pred             EEe
Confidence            864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.75  E-value=9e-17  Score=97.81  Aligned_cols=81  Identities=30%  Similarity=0.507  Sum_probs=68.0

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEec-CCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      ...+.+|+++.|.|.+.|.|.|.+.|++++..+... ++.+... +....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        10 ~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05737          10 VVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVT   89 (92)
T ss_pred             eEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEE
Confidence            357889999999999999999999999999988653 3444333 33457999999999999999999999999988887


Q ss_pred             EEE
Q psy12421        144 VIV  146 (168)
Q Consensus       144 l~v  146 (168)
                      |.|
T Consensus        90 v~v   92 (92)
T cd05737          90 VSV   92 (92)
T ss_pred             EeC
Confidence            764

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.74  E-value=1.6e-16  Score=97.66  Aligned_cols=90  Identities=27%  Similarity=0.506  Sum_probs=70.9

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC------CeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR------DYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +|.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...      ++.+........|.|.+++..|+|.|+|.
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~~~D~G~Y~C~   81 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQYTDAGEYLCT   81 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEEcCccEEEEEEecCccCcCEEEEEE
Confidence            477766666666777899999999999999999999988766432      12222222334799999999999999999


Q ss_pred             EEeCCcceEEEEEEEE
Q psy12421        131 ATNKHGTDETNCVVIV  146 (168)
Q Consensus       131 a~n~~g~~~~~~~l~v  146 (168)
                      |.|..|....++.|.|
T Consensus        82 A~N~~G~~~~~~~l~v   97 (97)
T cd05869          82 ASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EecCCCCeeEEEEEEC
Confidence            9999999999888865

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.74  E-value=1.6e-16  Score=98.01  Aligned_cols=83  Identities=18%  Similarity=0.397  Sum_probs=68.3

Q ss_pred             CCeEEecCCcEEEEEEEec-cCCCeeEEEeCCEECCCCCe-EEEecC-----CEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         65 RPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDY-SMSYSD-----GVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~-~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      ....+.+|+.+.|.|.+.| .|+|.+.|+|+|..+..... .+...+     ....|.|..+..+|+|.|+|.|.|..|.
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~   90 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCcc
Confidence            3467889999999999999 99999999999998875332 222221     1347999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy12421        138 DETNCVVIVE  147 (168)
Q Consensus       138 ~~~~~~l~v~  147 (168)
                      ....+.|.|.
T Consensus        91 ~~~t~~L~V~  100 (101)
T cd04975          91 KSLTFELYVN  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9999988875

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.74  E-value=1.8e-16  Score=95.70  Aligned_cols=87  Identities=25%  Similarity=0.404  Sum_probs=71.8

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      ||.+...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ...++  .|.|.+++.+|+|.|.|.|.|..|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~-~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G   77 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI-SMSGA--VLKIPNIQFEDEGTYECEAENIKG   77 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEE-EEeCC--EEEECCCCcccCEEEEEEEEECCC
Confidence            355666777888999999999999999999999999988765443322 22334  799999999999999999999999


Q ss_pred             ceEEEEEEEE
Q psy12421        137 TDETNCVVIV  146 (168)
Q Consensus       137 ~~~~~~~l~v  146 (168)
                      ....+..|.|
T Consensus        78 ~~~~~~~l~V   87 (88)
T cd04968          78 KDTHQGRIYV   87 (88)
T ss_pred             cEEEEEEEEE
Confidence            9988888876

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.74  E-value=4.5e-17  Score=94.77  Aligned_cols=73  Identities=29%  Similarity=0.535  Sum_probs=61.6

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      |+++.|.|.+.|.|.|.+.|+|++..+..........++  .|.|.+++.+|.|.|+|.|.|..|....+..|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~~~g--~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIWDDG--SLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEcCCC--EEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            678999999999999999999999877553322233445  7999999999999999999999999999888764

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.74  E-value=9.3e-17  Score=96.88  Aligned_cols=82  Identities=26%  Similarity=0.457  Sum_probs=68.3

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEec----CCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYS----DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~----~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      |+.+.|.|.+.|.|.|.+.|++++..+...  ++.+...    ...+.|.|.++...|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            788999999999999999999999888542  3333221    1124799999999999999999999999999999999


Q ss_pred             EeeCCCch
Q psy12421        146 VESEEESK  153 (168)
Q Consensus       146 v~~~p~~~  153 (168)
                      |.++|.+|
T Consensus        81 V~~~P~~P   88 (88)
T cd05735          81 VQEPPDPP   88 (88)
T ss_pred             EeCCCCCC
Confidence            99888764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.73  E-value=8.9e-17  Score=96.40  Aligned_cols=84  Identities=27%  Similarity=0.522  Sum_probs=70.9

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE  139 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  139 (168)
                      |...+.+..+..|+.+.|.|.+.|.|.|.+.|++++..+..... +...++  .|.|.++..+|+|.|+|.|.|..|...
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~-~~~~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~   78 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENR-IEVEAG--DLRITKLSLSDSGMYQCVAENKHGTIY   78 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCe-EEEeCC--EEEEeeCCHHHCEEEEEEEECCCCeEE
Confidence            34566778899999999999999999999999999998865432 233444  799999999999999999999999998


Q ss_pred             EEEEEEE
Q psy12421        140 TNCVVIV  146 (168)
Q Consensus       140 ~~~~l~v  146 (168)
                      .++.|.|
T Consensus        79 ~~~~l~V   85 (85)
T cd05728          79 ASAELAV   85 (85)
T ss_pred             EEEEEEC
Confidence            8888764

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.73  E-value=1.7e-16  Score=97.73  Aligned_cols=89  Identities=24%  Similarity=0.458  Sum_probs=70.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEECCC------CCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NRELSK------RDYSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +|.+. .+.+..+.+|+++.|.|.+.|.|.|.+.|++.  +..+..      .++.+....+...|.|.+++.+|+|.|.
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~~~D~G~Y~   80 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVKLSDSGRYD   80 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCCcCCCEEEE
Confidence            57775 47788999999999999999999999999994  333321      2233332234457999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEE
Q psy12421        129 CVATNKHGTDETNCVVIV  146 (168)
Q Consensus       129 C~a~n~~g~~~~~~~l~v  146 (168)
                      |.|.|..|....++.|.|
T Consensus        81 C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          81 CEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEeccCCcceeEEEEeC
Confidence            999999999888887754

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.72  E-value=1.6e-16  Score=92.83  Aligned_cols=72  Identities=28%  Similarity=0.470  Sum_probs=60.0

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEec-CCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +.|.|.+.|.|.|.+.|+|++..+..  .++.+... .+..+|.|.++...|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            47899999999999999999998863  33333332 34457999999999999999999999999999888865

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.72  E-value=3.7e-16  Score=95.83  Aligned_cols=89  Identities=26%  Similarity=0.481  Sum_probs=71.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC------CeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR------DYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +|.|. .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...      ++.+........|.|.+++..|+|.|.|.
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQLTDAGRYDCE   80 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEeCCccEEEEEECcCCcCcCEEeEEE
Confidence            46664 556788899999999999999999999999998655431      22222233445799999999999999999


Q ss_pred             EEeCCcceEEEEEEEE
Q psy12421        131 ATNKHGTDETNCVVIV  146 (168)
Q Consensus       131 a~n~~g~~~~~~~l~v  146 (168)
                      |.|..|....++.|.|
T Consensus        81 a~N~~G~~~~s~~l~v   96 (96)
T cd05732          81 ASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEeCCCCcEEEEEEeC
Confidence            9999999988887764

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.71  E-value=2.5e-16  Score=91.27  Aligned_cols=71  Identities=28%  Similarity=0.578  Sum_probs=58.5

Q ss_pred             cEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         74 TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        74 ~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      ++.|.|.+.|.|.|.+.|++++..+...........+  .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIVKEH--NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEEecC--CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            4789999999999999999999887654332223334  4778899999999999999999999999888764

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.71  E-value=5.8e-16  Score=93.87  Aligned_cols=84  Identities=18%  Similarity=0.312  Sum_probs=68.6

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe-EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN  141 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  141 (168)
                      .+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..... ..........|.|.++...|.|.|+|.|.|..|....+
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~   85 (90)
T cd04972           6 GPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLETTVDIYNLQLSNITSETQTTVTCTAENPVGQANVS   85 (90)
T ss_pred             CCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEEecCCEEEEEEecCCcccCEEEEEEEECCCCceeEE
Confidence            44566688999999999999999999999999988755332 22222334479999999999999999999999999888


Q ss_pred             EEEEE
Q psy12421        142 CVVIV  146 (168)
Q Consensus       142 ~~l~v  146 (168)
                      +.|.|
T Consensus        86 ~~L~v   90 (90)
T cd04972          86 VQVTV   90 (90)
T ss_pred             EEEeC
Confidence            87764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.71  E-value=4.8e-16  Score=90.80  Aligned_cols=73  Identities=27%  Similarity=0.447  Sum_probs=61.9

Q ss_pred             cEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         74 TCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        74 ~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      .+.|.|.+.|.|.|.+.|++++..+.. .+..+........|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIETTASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEECCCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            378999999999999999999998854 3444444455668999999999999999999999999998888764

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.71  E-value=6.2e-16  Score=95.46  Aligned_cols=82  Identities=23%  Similarity=0.435  Sum_probs=67.5

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEec-------CCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS-------DGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|++.++......+...       ...+.|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            3567789999999999999999999999999987543222111       112479999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy12421        139 ETNCVVIVE  147 (168)
Q Consensus       139 ~~~~~l~v~  147 (168)
                      ..++.|.|.
T Consensus        92 ~~t~~l~V~  100 (101)
T cd05859          92 SYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEE
Confidence            999988774

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.70  E-value=2.6e-16  Score=92.39  Aligned_cols=73  Identities=30%  Similarity=0.566  Sum_probs=61.6

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      |+++.|.|.+.|.|.|.+.|++++..+....  .......+  .|.|.+++..|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHVSSG--ALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEeeCC--EEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            6789999999999999999999999875421  12233344  7999999999999999999999999998888876

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.70  E-value=1.8e-16  Score=92.62  Aligned_cols=72  Identities=31%  Similarity=0.494  Sum_probs=59.2

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEecC-CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +.|.|.+.|.|.|.+.|+|++..+...  ++.+...+ +...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            478999999999999999999988642  33332222 3346999999999999999999999999999888864

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.70  E-value=4.5e-16  Score=90.69  Aligned_cols=73  Identities=29%  Similarity=0.553  Sum_probs=61.8

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      |+++.|.|.+.|.|.|.+.|++++..+...........+  .|.|.+++..|+|.|+|.|.|..|....++.|.|
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIWPDG--SLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEECCCC--eEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            678999999999999999999999987654323333444  6999999999999999999999999999888765

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.69  E-value=1.1e-15  Score=93.58  Aligned_cols=85  Identities=22%  Similarity=0.481  Sum_probs=66.7

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCC-CeeEEEe-CCEECCC-C-CeEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeCC-
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYK-GNRELSK-R-DYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKH-  135 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~-~~~~~~~-~-~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-  135 (168)
                      ..+....+..|+++.|.|.+.|.|. |.+.|++ ++..+.. . ++.+.. .....+|.|.+++.+|+|.|+|.|.|.. 
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~   84 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDE   84 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCC
Confidence            4566678889999999999999995 7999998 6765543 2 222222 2223579999999999999999999997 


Q ss_pred             cceEEEEEEEE
Q psy12421        136 GTDETNCVVIV  146 (168)
Q Consensus       136 g~~~~~~~l~v  146 (168)
                      |....++.|.|
T Consensus        85 g~~~~s~~l~v   95 (96)
T cd05865          85 GESEATVNVKI   95 (96)
T ss_pred             CcEEEEEEEEE
Confidence            88888888876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.69  E-value=3.9e-16  Score=91.62  Aligned_cols=73  Identities=23%  Similarity=0.421  Sum_probs=60.9

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      |+.+.|.|.+.|.|.|.+.|++++..+...  .......++  .|.|.+++..|.|.|+|.|.|..|...+++.|.|
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~~~~~~~--~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPSRKVDGD--TIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCceEEecCC--EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            678999999999999999999999988532  112222333  6889999999999999999999999999998876

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.69  E-value=1.3e-15  Score=93.83  Aligned_cols=90  Identities=24%  Similarity=0.465  Sum_probs=68.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-----CCeEEEecCC-EEEEEEc--cCCCCCCeEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-----RDYSMSYSDG-VVSMEII--DCKPEDSGEYK  128 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-----~~~~~~~~~~-~~~l~i~--~~~~~d~G~Y~  128 (168)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++..+..     ........++ ...+.+.  .+...|+|.|+
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~   80 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYV   80 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEE
Confidence            58888888899999999999999999999999999999998754     1112222233 2222222  23689999999


Q ss_pred             EEEEeCCcc-eEEEEEEEE
Q psy12421        129 CVATNKHGT-DETNCVVIV  146 (168)
Q Consensus       129 C~a~n~~g~-~~~~~~l~v  146 (168)
                      |.|.|..|. ....+.|.|
T Consensus        81 C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          81 CVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEccccceecceEEEEe
Confidence            999999999 566666665

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.69  E-value=1.1e-15  Score=92.67  Aligned_cols=81  Identities=17%  Similarity=0.324  Sum_probs=66.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE-E
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-N  141 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~  141 (168)
                      .+.+..+.+|+++.|.|.+.|. .|.+.|++++..+...+..+...++  .|.|.+++.+|+|.|.|.|.|..|.... .
T Consensus         9 ~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~   85 (91)
T cd05740           9 SVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPPRLQLSNDNR--TLTFNNVTRSDTGHYQCEASNEVSNMTSDP   85 (91)
T ss_pred             ccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCCCEEEeCCCC--EEEECcCChhhCEEEEEEEEcCCCCEEeee
Confidence            3446788899999999999999 9999999999988665543333333  7999999999999999999999998544 5


Q ss_pred             EEEEE
Q psy12421        142 CVVIV  146 (168)
Q Consensus       142 ~~l~v  146 (168)
                      +.|.|
T Consensus        86 ~~L~V   90 (91)
T cd05740          86 YILNV   90 (91)
T ss_pred             EEEEe
Confidence            56655

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.69  E-value=5.6e-16  Score=88.32  Aligned_cols=66  Identities=27%  Similarity=0.436  Sum_probs=55.7

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      ++|.|.+.|.|.|.+.|+|+|..+....     ..  ..|.|.++..+|+|.|+|.|.|..|....+..+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~-----~~--~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH-----SQ--HSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC-----Cc--CEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            4789999999999999999999886321     22  279999999999999999999999988777776653

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.69  E-value=9.3e-16  Score=89.76  Aligned_cols=72  Identities=31%  Similarity=0.476  Sum_probs=59.4

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEec-CCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +.|.|.+.|.|.|.+.|+|++..+...  ++.+... .+...|.|.+++..|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            478999999999999999999988642  3333222 34457999999999999999999999999998888764

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.69  E-value=1.8e-15  Score=94.83  Aligned_cols=96  Identities=21%  Similarity=0.330  Sum_probs=71.5

Q ss_pred             CCCeEEeecCCeE-E---ecCCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEec-C---CEEEEEEccCC-CCCC
Q psy12421         56 SAPNFTFLLRPRV-M---QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYS-D---GVVSMEIIDCK-PEDS  124 (168)
Q Consensus        56 ~~p~~~~~~~~~~-~---~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~-~---~~~~l~i~~~~-~~d~  124 (168)
                      .+|.|...+.... +   ..|..+.|.|.+.|.|.|.+.|++++..+...  ++.+... .   ....|.|.++. .+|.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDY   82 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCC
Confidence            4566655444222 2   24678999999999999999999999988542  2322111 1   12479999987 6999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      |.|+|.|.|..|.....+.|.+.+.|+
T Consensus        83 G~Y~C~A~N~~G~~~~~i~L~~~~~p~  109 (109)
T cd05773          83 ALFTCTAHNSLGEDSLDIQLVSTSRPD  109 (109)
T ss_pred             EEEEEEEEeCCccCcEEEEEEecCCCC
Confidence            999999999999999999999987763

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.68  E-value=5.3e-16  Score=89.88  Aligned_cols=70  Identities=27%  Similarity=0.484  Sum_probs=58.5

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +.|.|.+.|.|.|.+.|++++..+...........+  .|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKLNNNK--TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEEcCCC--EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            468999999999999999998877554333333333  7999999999999999999999999998888876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.68  E-value=1.8e-15  Score=90.71  Aligned_cols=80  Identities=25%  Similarity=0.498  Sum_probs=65.1

Q ss_pred             eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ..+..|+.+.|.|.+.|.|.|.+.|++++..+.....  ..........|.|.++...|+|.|+|.|.|..|....++.|
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            4577899999999999999999999999998865321  11222233478999999999999999999999999988887


Q ss_pred             EE
Q psy12421        145 IV  146 (168)
Q Consensus       145 ~v  146 (168)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            64

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>KOG3513|consensus

Probab=99.68  E-value=5.2e-16  Score=125.47  Aligned_cols=130  Identities=25%  Similarity=0.277  Sum_probs=104.3

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN   95 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~   95 (168)
                      .|-+.|++..|+|.  |.|   .+.+............+..+|.++..+++..+..|++++|.|.+.|.|.|.+.|+++|
T Consensus       295 vL~I~nv~~~D~G~--Y~C---~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg  369 (1051)
T KOG3513|consen  295 VLKIPNVQYEDAGE--YEC---IAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNG  369 (1051)
T ss_pred             EEEecccCcCCCeE--EEE---EEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCC
Confidence            34477888888776  433   3444444444444456788999999999999999999999999999999999999999


Q ss_pred             EECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421         96 RELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus        96 ~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      .++.....  ......+  .|.|.++...|+|+|+|.|.|..|...+++.|.|......
T Consensus       370 ~pl~~~~r~~~~~i~~g--~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~  426 (1051)
T KOG3513|consen  370 EPLEPAERDPRYKIDDG--TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPV  426 (1051)
T ss_pred             eecCccCCCcceEEeCC--EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCC
Confidence            99875321  2334555  7999999999999999999999999999999999877443

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.68  E-value=3e-15  Score=91.02  Aligned_cols=81  Identities=28%  Similarity=0.518  Sum_probs=67.0

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecC-CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSD-GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      ...+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++...... ....|.|.+++.+|+|.|+|.|.|.+|....++.
T Consensus        10 ~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   89 (92)
T cd05891          10 VVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVT   89 (92)
T ss_pred             cEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEE
Confidence            467889999999999999999999999999987653 33332222 2347999999999999999999999999998887


Q ss_pred             EEE
Q psy12421        144 VIV  146 (168)
Q Consensus       144 l~v  146 (168)
                      |.|
T Consensus        90 v~~   92 (92)
T cd05891          90 VSV   92 (92)
T ss_pred             EEC
Confidence            764

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.67  E-value=2.6e-15  Score=89.94  Aligned_cols=78  Identities=18%  Similarity=0.398  Sum_probs=62.5

Q ss_pred             CcEEEEEEEeccCCC--eeEEEeCCEECCCC----CeE-EEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         73 QTCKLLCCLSGKPPP--TVKWYKGNRELSKR----DYS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        73 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~----~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      +++.|.|.+.|.|.|  .+.|++++..+...    ++. .........|.|.+++..|+|.|+|.|.|..|...+++.|.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            468999999999987  57999999887532    221 12222233799999999999999999999999999999999


Q ss_pred             EeeCC
Q psy12421        146 VESEE  150 (168)
Q Consensus       146 v~~~p  150 (168)
                      |.++|
T Consensus        81 V~~~P   85 (85)
T cd05854          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.67  E-value=1e-15  Score=89.81  Aligned_cols=73  Identities=27%  Similarity=0.481  Sum_probs=61.2

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      |+.+.|.|.+.|.|.|.+.|++++..+.....  ......+  .|.|.+++..|+|.|+|.|.|..|...+.+.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V   75 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRVDGG--TLILSNVQPNDTAVYQCNASNVHGYLLANAFVHV   75 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcceEEccCC--EEEECCCChhhCEEEEEEEEccCCeEEEeEEEEE
Confidence            67899999999999999999999998764321  2222333  7999999999999999999999999998888876

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.67  E-value=2.3e-15  Score=91.66  Aligned_cols=81  Identities=22%  Similarity=0.378  Sum_probs=62.2

Q ss_pred             CeEEeecCCeEEecC---CcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCC-CCCCeEEEEEEEe
Q psy12421         58 PNFTFLLRPRVMQVR---QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATN  133 (168)
Q Consensus        58 p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n  133 (168)
                      |.|...+.+..+.++   ..+.|.|.+.|.|.|.+.|++++..+..........++  .|.|.++. ..|+|.|.|.|.|
T Consensus         2 P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~N   79 (93)
T cd05849           2 PVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSMVGG--NLVINNPDKYKDAGRYVCIVSN   79 (93)
T ss_pred             CEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEEECC--EEEECcCCcCCCCEEEEEEEEe
Confidence            666666666655544   47999999999999999999999887532222233455  78898875 6899999999999


Q ss_pred             CCcceEE
Q psy12421        134 KHGTDET  140 (168)
Q Consensus       134 ~~g~~~~  140 (168)
                      ..|....
T Consensus        80 ~~G~~~s   86 (93)
T cd05849          80 IYGKVRS   86 (93)
T ss_pred             CcceEEE
Confidence            9998644

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.67  E-value=3.6e-15  Score=91.02  Aligned_cols=81  Identities=31%  Similarity=0.553  Sum_probs=63.2

Q ss_pred             CeEEeecCCeEEe---cCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12421         58 PNFTFLLRPRVMQ---VRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVAT  132 (168)
Q Consensus        58 p~~~~~~~~~~~~---~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~  132 (168)
                      |.|...+.+..+.   .|+.+.|.|.+.|.|.|.+.|++++..+... .......++  .|.|.++. ..|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~~~~g--~L~i~~~~~~~D~G~Y~C~A~   79 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYSLIDG--NLIISNPSEVKDSGRYQCLAT   79 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEEeeCC--eEEEccCCccCcCEEEEEEEE
Confidence            6677777776554   4689999999999999999999999988542 233333445  68888875 699999999999


Q ss_pred             eCCcceEE
Q psy12421        133 NKHGTDET  140 (168)
Q Consensus       133 n~~g~~~~  140 (168)
                      |..|...+
T Consensus        80 N~~G~~~S   87 (94)
T cd05848          80 NSIGSILS   87 (94)
T ss_pred             cCCCeEEe
Confidence            99998643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.66  E-value=9.9e-16  Score=88.24  Aligned_cols=68  Identities=28%  Similarity=0.561  Sum_probs=56.7

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      +.|.|.+.|.|.|.+.|+|++..+..........++  .|.|.++...|+|.|+|.|.|..|....++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISPEG--YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECCCC--EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            468999999999999999999887653322233344  79999999999999999999999999888766

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.66  E-value=1.7e-15  Score=89.10  Aligned_cols=71  Identities=31%  Similarity=0.644  Sum_probs=55.8

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE--EEEEEEe
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET--NCVVIVE  147 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~  147 (168)
                      ++|.|.+.|.|.|.+.|+|++..+....  +.+....+  .|.|.++..+|+|.|.|.|.|..|....  .+.|.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~   75 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSVSSKER--TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLSII   75 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEEeCCCC--EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence            4789999999999999999999886532  22322233  7999999999999999999999998754  4455543

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.66  E-value=2.6e-15  Score=86.92  Aligned_cols=70  Identities=30%  Similarity=0.525  Sum_probs=57.9

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      ++|.|.+.|.|.|.+.|+|++..+..... ......  .|.|.++...|+|.|+|.|.|..|....+..+.+.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~-~~~~~~--~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNR-TKKSGH--SLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCE-EEcCCC--EEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            46899999999999999999998876532 222333  79999999999999999999999998777776653

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.66  E-value=1e-14  Score=89.06  Aligned_cols=85  Identities=22%  Similarity=0.420  Sum_probs=64.8

Q ss_pred             CeEEeecCCeEEecC---CcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12421         58 PNFTFLLRPRVMQVR---QTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCK-PEDSGEYKCVAT  132 (168)
Q Consensus        58 p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~  132 (168)
                      |.|...+.+..+.+|   +++.|.|.+.|.|.|.+.|++++..+... .......++  .|.|.+.. ..|.|.|+|.|.
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~~~g--~L~I~~~~~~~D~G~Y~C~A~   79 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTLVAG--NLVINNPQKARDAGSYQCLAI   79 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEEECC--eEEEccCCccCcCEEEEEEEE
Confidence            677777777777665   57999999999999999999999988532 222223344  68887765 599999999999


Q ss_pred             eCCcceEE-EEEE
Q psy12421        133 NKHGTDET-NCVV  144 (168)
Q Consensus       133 n~~g~~~~-~~~l  144 (168)
                      |..|...+ .+.|
T Consensus        80 N~~G~~~s~~a~l   92 (94)
T cd05850          80 NRCGTVVSREANL   92 (94)
T ss_pred             cCcCcEEEEEEEE
Confidence            99998654 4443

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.65  E-value=1e-14  Score=88.41  Aligned_cols=85  Identities=21%  Similarity=0.448  Sum_probs=66.6

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEe-CCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK-GNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      ...+.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+.. .++.+...+....|.|.++..+|+|.|+|.|.|..|..
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~   82 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATDAKGQT   82 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEEeCCCeeEEEEecCChHHCEEEEEEEEcCCCcE
Confidence            45677788999999999999999998 899998 4655543 34444434445589999999999999999999999985


Q ss_pred             -EEEEEEEE
Q psy12421        139 -ETNCVVIV  146 (168)
Q Consensus       139 -~~~~~l~v  146 (168)
                       .++..|.+
T Consensus        83 ~~~~i~l~~   91 (92)
T cd05866          83 QEATVVLEI   91 (92)
T ss_pred             EEEEEEEEE
Confidence             45555543

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.65  E-value=5.5e-15  Score=87.15  Aligned_cols=74  Identities=26%  Similarity=0.420  Sum_probs=61.0

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      |+++.|.|.+.|.|.|.+.|++++..+.. .++.+....+...|.|.++..+|+|.|.|.|.|..|.......+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSEGGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEECCCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            67899999999999999999999887755 344444445556899999999999999999999999876655443

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.65  E-value=2.7e-15  Score=86.83  Aligned_cols=70  Identities=30%  Similarity=0.536  Sum_probs=57.9

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +.|.|.+.|.|.|.+.|++++..+............  .|.|.++...|+|.|+|.|.|..|.....+.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADRTKFENFNK--TLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCceeEecCCC--EEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            468999999999999999998877554333222233  7999999999999999999999999988888876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.64  E-value=3e-15  Score=86.20  Aligned_cols=68  Identities=26%  Similarity=0.472  Sum_probs=55.7

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +.|.|.+.|.|.|.+.|+|++..+.... .. ..+.  .|.|.++..+|+|.|+|.|.|..|.......+.+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~-~~-~~~~--~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l   68 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNH-TF-KRGV--HLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQL   68 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCC-EE-ccCC--EEEECcCCHHHCEEEEEEEEECCCceeeEEEEEE
Confidence            3689999999999999999999987543 22 1222  6999999999999999999999998777666554

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.64  E-value=4.8e-15  Score=88.87  Aligned_cols=78  Identities=19%  Similarity=0.325  Sum_probs=61.7

Q ss_pred             CcEEEEEEEeccCCC--eeEEEeCCEECCCCC----eE-EEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         73 QTCKLLCCLSGKPPP--TVKWYKGNRELSKRD----YS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        73 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~----~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      +++.|.|.+.|.|.|  .+.|++++..+....    +. .........|.|.+++..|+|.|+|.|.|..|....++.|.
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            468999999999988  568999998875321    11 11112223799999999999999999999999999999999


Q ss_pred             EeeCC
Q psy12421        146 VESEE  150 (168)
Q Consensus       146 v~~~p  150 (168)
                      |.++|
T Consensus        81 V~~pP   85 (85)
T cd04970          81 VRGPP   85 (85)
T ss_pred             EECCC
Confidence            98765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.64  E-value=2.9e-15  Score=86.25  Aligned_cols=69  Identities=33%  Similarity=0.574  Sum_probs=58.3

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +.|.|.+.|.|.|.+.|++++..+...++... .++  .|.|.+++.+|+|.|+|.|.|..|....+..|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~-~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKGRAEIL-DDK--SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCCcEEEe-eCC--EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            46899999999999999999887765554443 333  7999999999999999999999999888887764

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>KOG4194|consensus

Probab=99.64  E-value=1.1e-15  Score=117.17  Aligned_cols=142  Identities=22%  Similarity=0.247  Sum_probs=108.8

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEe-eecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFW-QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN   95 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~   95 (168)
                      +...||...|+|.+++     .+.+....++.-. ...+...|.|+..|.+..+..|+..+|.|.+.|.|.|.+.|-|+|
T Consensus       576 L~L~nVt~td~grYQC-----VvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdg  650 (873)
T KOG4194|consen  576 LHLDNVTFTDEGRYQC-----VVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDG  650 (873)
T ss_pred             eeeeeeecccCceEEE-----EEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcC
Confidence            4477888888776433     4444444333321 234566899999999999999999999999999999999999987


Q ss_pred             EE-CCC--CCeEE-EecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421         96 RE-LSK--RDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus        96 ~~-~~~--~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      .. ++.  .+... ...+.  .+.|.+++.+|.|.|+|.|.|..|..+..+.|.|.+.|.....  +...+|.+||
T Consensus       651 gtdFPAA~eRRl~Vmpedd--~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~P--L~~~~V~~ge  722 (873)
T KOG4194|consen  651 GTDFPAARERRLHVMPEDD--VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIP--LEDQLVVVGE  722 (873)
T ss_pred             CCCCchhhhheeeecCCCC--EEEEecccccccceeEEeeeccccceeeceEEEEecCCccccc--ccceEEEecc
Confidence            65 443  23222 33344  7899999999999999999999999999999999988765544  6677777776

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.63  E-value=7.7e-15  Score=88.89  Aligned_cols=76  Identities=24%  Similarity=0.423  Sum_probs=62.0

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECC---------CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELS---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      |+++.|.|.+.|.|.|.+.|++++..+.         ..++.+ ..++  .|.|.+++.+|+|.|.|.|.|..|.....+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v-~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~   77 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSV-SQTG--DLTITNVQRSDVGYYICQTLNVAGSILTKA   77 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEE-CCCC--eEEEeeCChhhCEEEEEEEEcCCCceEEEE
Confidence            6789999999999999999999876421         122222 2234  699999999999999999999999999999


Q ss_pred             EEEEeeCC
Q psy12421        143 VVIVESEE  150 (168)
Q Consensus       143 ~l~v~~~p  150 (168)
                      .|.|.+..
T Consensus        78 ~l~V~~~~   85 (90)
T cd05726          78 YLEVTDVI   85 (90)
T ss_pred             EEEEeecc
Confidence            99998754

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.63  E-value=7.5e-15  Score=87.45  Aligned_cols=76  Identities=16%  Similarity=0.250  Sum_probs=61.9

Q ss_pred             CcEEEEEEEec--cCCCeeEEEeCCEECCC--C--CeEEEe---cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         73 QTCKLLCCLSG--KPPPTVKWYKGNRELSK--R--DYSMSY---SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        73 ~~~~l~C~~~g--~p~p~i~W~~~~~~~~~--~--~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      +++.|.|.+.+  .+.+.+.|+++|+.+..  .  ++....   ..+  .|.|.+++..|+|.|+|.|.|..+....++.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~--~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~   78 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAG--DLMIRSIQLKHAGKYVCMVQTSVDKLSAAAD   78 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCC--cEEEecCCHHHCEEEEEEEEcccCceEEEEE
Confidence            36889999977  55889999999999862  1  222211   223  7999999999999999999999999999999


Q ss_pred             EEEeeCC
Q psy12421        144 VIVESEE  150 (168)
Q Consensus       144 l~v~~~p  150 (168)
                      |.|.++|
T Consensus        79 L~V~~pP   85 (85)
T cd05853          79 LIVRGPP   85 (85)
T ss_pred             EEEecCC
Confidence            9999876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.62  E-value=1.5e-14  Score=83.20  Aligned_cols=68  Identities=37%  Similarity=0.624  Sum_probs=54.5

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      |+++.|.|.+.|.|.|.+.|+|++..+..... ...  +...|.|.++.  |+|.|+|.|.|..|....++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~-~~~--~~~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDE-MPV--GRNVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccc-eec--CccEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999999988765332 111  22268888864  7999999999999998887765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.62  E-value=1.2e-14  Score=84.86  Aligned_cols=73  Identities=23%  Similarity=0.605  Sum_probs=59.1

Q ss_pred             CCcEEEEEEEeccCCCeeEEEe-CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+...........+  .|.|..+...|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVYDNG--TLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEecCC--EEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            6789999999999999999997 56665543333333444  6899999999999999999999999888877754

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.62  E-value=1.4e-14  Score=85.64  Aligned_cols=78  Identities=26%  Similarity=0.453  Sum_probs=62.9

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      .+..+.+|+.+.|.|.+.+. .+.+.|+|+|..+...... ...+.  .|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~-~~~~~--~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v   77 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRT-RITGE--EVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV   77 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceE-EEeCC--EEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence            45678899999999999886 6789999999888653322 22333  79999999999999999999999998777766


Q ss_pred             EE
Q psy12421        145 IV  146 (168)
Q Consensus       145 ~v  146 (168)
                      .|
T Consensus        78 ~V   79 (79)
T cd04973          78 NV   79 (79)
T ss_pred             eC
Confidence            53

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.61  E-value=1.1e-14  Score=86.49  Aligned_cols=79  Identities=29%  Similarity=0.553  Sum_probs=63.2

Q ss_pred             eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      .....|+.+.|.|.+.|.|.|.+.|++++..+...... ........|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~v   82 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIG-ESRKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVDV   82 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccc-eecCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEeC
Confidence            34567999999999999999999999999876543222 12233347999999999999999999999999887777653

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.61  E-value=1.3e-14  Score=84.62  Aligned_cols=70  Identities=30%  Similarity=0.635  Sum_probs=55.7

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v  146 (168)
                      +.|.|.+.|.|.|.+.|++++..+..  ........++  .|.|.+++.+|+|.|+|.|.|..|.. .....|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~g--~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG--ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEcCCc--EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            36899999999999999999988762  2222223344  69999999999999999999999985 55666665

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.61  E-value=2.4e-14  Score=87.62  Aligned_cols=84  Identities=26%  Similarity=0.407  Sum_probs=63.4

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccC-----CCCCCeEEEEEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDC-----KPEDSGEYKCVAT  132 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~-----~~~d~G~Y~C~a~  132 (168)
                      |...+.+..+..|+++.|.|.+.|.|.|.+.|+|++..+....  ......++  .+.|..+     ...|.|.|+|.|.
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~--~l~i~~v~~~~~~~~D~G~Y~C~a~   79 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQLPNG--SLLITSVVHSKHNKPDEGFYQCVAQ   79 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEEccCC--eEEEeeeeccCCCCCcCEEEEEEEE
Confidence            3456667788899999999999999999999999999886432  12222344  4556555     5889999999999


Q ss_pred             eC-Ccce-EEEEEEE
Q psy12421        133 NK-HGTD-ETNCVVI  145 (168)
Q Consensus       133 n~-~g~~-~~~~~l~  145 (168)
                      |. .|.. ...+.|.
T Consensus        80 N~~~G~~~s~~~~l~   94 (95)
T cd05722          80 NDSLGSIVSRTARLT   94 (95)
T ss_pred             CCccCcEEEeeeEEe
Confidence            99 9986 4455554

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.60  E-value=1.8e-14  Score=84.66  Aligned_cols=68  Identities=24%  Similarity=0.450  Sum_probs=54.6

Q ss_pred             EEEEEeccCCCeeEEEeCCEECCCCCeEE---E-e--cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         77 LLCCLSGKPPPTVKWYKGNRELSKRDYSM---S-Y--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        77 l~C~~~g~p~p~i~W~~~~~~~~~~~~~~---~-~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      +.|.+.|.|.|.++|+|++..+....+..   . .  ......|.|.++...|+|.|+|.|.|..|....++.+
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~   76 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSA   76 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEe
Confidence            67899999999999999999997644221   1 1  1223479999999999999999999999998877755

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.60  E-value=1.7e-14  Score=83.32  Aligned_cols=69  Identities=22%  Similarity=0.232  Sum_probs=54.7

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      ++|.|.+.|.|.|.+.|+|++.++..........+.  +|.|.++..+|+|.|+|.|.|..........+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i~   69 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHVDGY--SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTIT   69 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEeCCC--EEEECcCCHHHCEEEEEEEEccccceEeeEEEE
Confidence            468999999999999999999988654323333333  799999999999999999999876665555444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.60  E-value=3e-14  Score=85.46  Aligned_cols=80  Identities=31%  Similarity=0.517  Sum_probs=62.9

Q ss_pred             cCCeEEecCCcEEEEEEE-eccCCCeeEEEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE-E
Q psy12421         64 LRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-T  140 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~  140 (168)
                      +.+..+.+|+++.|.|.+ .|.|.|.+.|++++..+.... ......++  .|.|.++...|+|.|+|.|.|..|... .
T Consensus         3 p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~   80 (86)
T cd05724           3 PSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVDDG--NLLIAEARKSDEGTYKCVATNMVGERESA   80 (86)
T ss_pred             CccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEccCC--EEEEeECCcccCEEEEEEEEeccCceeee
Confidence            456778899999999997 799999999999999876522 12222334  799999999999999999999999864 3


Q ss_pred             EEEEE
Q psy12421        141 NCVVI  145 (168)
Q Consensus       141 ~~~l~  145 (168)
                      ...|.
T Consensus        81 ~~~l~   85 (86)
T cd05724          81 AARLS   85 (86)
T ss_pred             eEEEE
Confidence            44443

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>KOG3513|consensus

Probab=99.60  E-value=1.3e-14  Score=117.48  Aligned_cols=140  Identities=21%  Similarity=0.273  Sum_probs=105.5

Q ss_pred             CCCCCCceeEEEEeCCCCCCCCC---CcccceeccCcceeeEeee--cccCCCeEEeecC-CeEEecCCcEEEEEEEecc
Q psy12421         11 LRYPQDNPRLRTRAIPKTIPAYV---PEVQQVRRREPLQITFWQE--TVESAPNFTFLLR-PRVMQVRQTCKLLCCLSGK   84 (168)
Q Consensus        11 ~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~   84 (168)
                      ..-..+|||.+|..+|.+.+.|.   +...++.++.++.+.+...  ....+|.|..... ......|+.+.|.|.+.|+
T Consensus       189 ~~~~G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~  268 (1051)
T KOG3513|consen  189 SQENGNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGN  268 (1051)
T ss_pred             ecccceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCC
Confidence            45567899999999997553322   3344555566666665322  2246788765443 5778889999999999999


Q ss_pred             CCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421         85 PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus        85 p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      |.|.+.|.|.+......+......+.  +|.|.++...|+|.|+|.|.|..|.......|.|...|.=
T Consensus       269 P~P~i~W~k~~g~~~~~r~~~~~~~~--vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w  334 (1051)
T KOG3513|consen  269 PTPQIKWRKVDGKPPPRRATYSNYGK--VLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYW  334 (1051)
T ss_pred             CCCcEEEEeCCCCCCCcceeeecccc--EEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchh
Confidence            99999999988754444434443444  8999999999999999999999999999999999877643

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=1.2e-14  Score=85.04  Aligned_cols=70  Identities=31%  Similarity=0.580  Sum_probs=55.5

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEEC-CC---CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNREL-SK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~-~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +.|.|.+.|.|.|.+.|++++... ..   .++.....++  .|.|.++..+|+|.|.|.|.|..|.....+.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD--VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC--EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            368999999999999999998632 11   1222222233  7899999999999999999999999988888876

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.59  E-value=8.7e-14  Score=85.58  Aligned_cols=87  Identities=20%  Similarity=0.393  Sum_probs=68.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCC---CCeEEEec----CCEEEEEEccCCCCC-CeEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSK---RDYSMSYS----DGVVSMEIIDCKPED-SGEY  127 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~---~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y  127 (168)
                      ||.+. .+....+.+|+.+.|.|.+.|.|.| .+.|++++..+..   .++.+...    .....|.|.+++.+| .|.|
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            56664 4566778999999999999999999 6999999988754   23433322    123479999999855 8999


Q ss_pred             EEEEEeCCcceEEEEEE
Q psy12421        128 KCVATNKHGTDETNCVV  144 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l  144 (168)
                      .|.|.|..|.....+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999998877765

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.58  E-value=6.2e-14  Score=83.07  Aligned_cols=69  Identities=25%  Similarity=0.486  Sum_probs=55.0

Q ss_pred             EEEEEeccCCCeeEEEeCCEECCCCCeE-EE--e-----cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         77 LLCCLSGKPPPTVKWYKGNRELSKRDYS-MS--Y-----SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        77 l~C~~~g~p~p~i~W~~~~~~~~~~~~~-~~--~-----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      +.|.+.|.|.|.+.|+|+|..+...... ..  .     ......|.|.++...|+|.|+|.|.|..|...+++.|.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            6799999999999999999988764321 11  1     11233699999999999999999999999988877653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.58  E-value=1.9e-14  Score=87.14  Aligned_cols=76  Identities=18%  Similarity=0.396  Sum_probs=57.3

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCC----EECCCC--Ce-EEEe-------cCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGN----RELSKR--DY-SMSY-------SDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~----~~~~~~--~~-~~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      |+.+.|.|.+.|.|.|.+.|+|++    ..+...  .. ....       .+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999963    222111  11 1111       111236899999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy12421        138 DETNCVVIVE  147 (168)
Q Consensus       138 ~~~~~~l~v~  147 (168)
                      ..+++.|.|.
T Consensus        81 ~~~sa~L~V~   90 (90)
T cd04974          81 SHHSAWLTVL   90 (90)
T ss_pred             ccCCEEEEeC
Confidence            9999988873

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.57  E-value=5.3e-14  Score=82.49  Aligned_cols=73  Identities=27%  Similarity=0.561  Sum_probs=59.0

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      +.|.|.+.|.|.|.+.|+|++..+.... ...........|.|.++...|.|.|+|.+.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEEeCCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            3689999999999999999999875431 122222223379999999999999999999999999999988875

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.57  E-value=5e-14  Score=83.41  Aligned_cols=73  Identities=19%  Similarity=0.419  Sum_probs=57.8

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE  139 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  139 (168)
                      ...+.+..+..|+.+.|.|.+.|.|.| .+.|++++..+... ..  ...+  .|.|..+  .|.|.|.|.|.|..|...
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~~-~~--~~~s--~L~i~~~--~d~g~Y~C~A~N~~G~~~   74 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGDP-PA--PSPS--VLNVPGL--NETSKFSCEAHNAKGVTT   74 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCCC-CC--CCCC--EEEEccc--cCCeEEEEEEEeccCcEE
Confidence            345667889999999999999999999 79999999988641 11  1222  6888776  478999999999999765


Q ss_pred             E
Q psy12421        140 T  140 (168)
Q Consensus       140 ~  140 (168)
                      .
T Consensus        75 s   75 (81)
T cd05749          75 S   75 (81)
T ss_pred             e
Confidence            4

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.57  E-value=1.1e-13  Score=84.00  Aligned_cols=81  Identities=28%  Similarity=0.523  Sum_probs=60.9

Q ss_pred             CeEEeecCCeEEec---CCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCC-CCCCeEEEEEEE
Q psy12421         58 PNFTFLLRPRVMQV---RQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVAT  132 (168)
Q Consensus        58 p~~~~~~~~~~~~~---g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~  132 (168)
                      |.|...+.+..+..   |.++.|.|.+.|.|.|.+.|++++..+.. ........++  .|.|.++. ..|+|.|+|.|.
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~~~~--~L~i~~~~~~~d~G~Y~C~a~   79 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSLVGG--NLVISNPSKAKDAGRYQCLAS   79 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEEECC--EEEEecCCccCCCEEEEEEEE
Confidence            56666666655544   35799999999999999999999998842 2222333444  68888776 489999999999


Q ss_pred             eCCcceEE
Q psy12421        133 NKHGTDET  140 (168)
Q Consensus       133 n~~g~~~~  140 (168)
                      |..|....
T Consensus        80 N~~G~~~S   87 (91)
T cd04967          80 NIVGTVLS   87 (91)
T ss_pred             cCCCEEEe
Confidence            99997543

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.57  E-value=3.5e-14  Score=85.98  Aligned_cols=75  Identities=20%  Similarity=0.426  Sum_probs=57.6

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeC----CEECCCCC---eEEEec-------CCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKG----NRELSKRD---YSMSYS-------DGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~----~~~~~~~~---~~~~~~-------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      |+++.|.|.+.|.|.|.+.|++.    +..+....   ..+...       .....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            67899999999999999999984    33332211   111111       11247999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy12421        138 DETNCVVIV  146 (168)
Q Consensus       138 ~~~~~~l~v  146 (168)
                      ...++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999988877

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.56  E-value=3.9e-14  Score=86.31  Aligned_cols=79  Identities=20%  Similarity=0.293  Sum_probs=63.2

Q ss_pred             CeEEecCCcEEEEEEEec-----cCCCeeEEEeCCEECCC---CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         66 PRVMQVRQTCKLLCCLSG-----KPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      ...+.+|+.+.|.|.+.|     .|.|.+.|||++..+..   ....+...++  .|.|.++..+|+|.|.|.+.|..|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~~~N~~g~   85 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQQKD--LLWFLPAALEDSGLYTCVVRNSTYC   85 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeeecCC--eEEEccCCcccCeEEEEEEcCCCcc
Confidence            466778999999999998     68999999999865432   1122222333  7999999999999999999999999


Q ss_pred             eEEEEEEEE
Q psy12421        138 DETNCVVIV  146 (168)
Q Consensus       138 ~~~~~~l~v  146 (168)
                      .+..+.|.|
T Consensus        86 ~~~~~~L~v   94 (94)
T cd05756          86 MKVSISLTV   94 (94)
T ss_pred             EEEEEEEEC
Confidence            988887764

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.56  E-value=2.6e-13  Score=82.44  Aligned_cols=84  Identities=26%  Similarity=0.500  Sum_probs=63.5

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEe-CCEECCC-CCeEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK-GNRELSK-RDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~-~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      ...+.+..+..|+++.|.|.+.|.| +.+.|++ ++..+.. .++.... .....+|.|.+++.+|+|.|+|.|.|..|.
T Consensus         4 ~v~p~~~~v~~G~~~~l~C~~~G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~   82 (92)
T cd04977           4 DIVPSQGEISVGESKFFLCQVIGEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGT   82 (92)
T ss_pred             EEecCcEEECCCCeEEEEEEeEeeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCC
Confidence            4566678899999999999999997 4999997 5555443 3333322 234457999999999999999999999765


Q ss_pred             -eEEEEEEE
Q psy12421        138 -DETNCVVI  145 (168)
Q Consensus       138 -~~~~~~l~  145 (168)
                       ...++.|.
T Consensus        83 ~~~~sv~l~   91 (92)
T cd04977          83 ESEATVNLK   91 (92)
T ss_pred             cceeEEEEE
Confidence             56666664

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.55  E-value=7.4e-14  Score=82.82  Aligned_cols=74  Identities=26%  Similarity=0.545  Sum_probs=56.4

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCE-----ECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNR-----ELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~-----~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      |+++.|.|.+.|.|.|.+.|+|++.     .+.....  ... ......|.|.+++.+|+|.|.|.|.|..|.....+.|
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   79 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVV-VTNIGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPL   79 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEE-EccccEEEEccCCcccCEEEEEEEecCCceEEEEEEE
Confidence            6789999999999999999999742     1111111  111 1112379999999999999999999999999988888


Q ss_pred             EE
Q psy12421        145 IV  146 (168)
Q Consensus       145 ~v  146 (168)
                      .|
T Consensus        80 ~v   81 (81)
T cd05765          80 SV   81 (81)
T ss_pred             eC
Confidence            65

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.52  E-value=1.7e-13  Score=80.08  Aligned_cols=69  Identities=29%  Similarity=0.530  Sum_probs=55.0

Q ss_pred             EEEEEEEec-cCCCeeEEEeCCEECCCCCe----EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDY----SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      +.|.|.+.| .|.|.+.|++++..+.....    .+........|.|.++...|+|.|+|.|.|..|....++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            368999999 99999999999988764321    1222334457999999999999999999999999876653

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.50  E-value=7.3e-13  Score=79.19  Aligned_cols=70  Identities=19%  Similarity=0.369  Sum_probs=56.3

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .|.+..+..|+++.|.|.+. .+.+.+.|++++..+..........++  .|.|.+++..|+|.|+|.+.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~-~~~~~i~W~~ng~~i~~~~~r~~~~~~--~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPK-SNLARVVWKFDGKVLTPESAKYLLYRD--GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECC-CCCCeEEEEECCEECCCCCceEEEECC--cEEEeCCCHHHCEEEEEEEEecc
Confidence            35567888999999999975 478899999999998764222333444  69999999999999999999874

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.47  E-value=6.8e-13  Score=77.93  Aligned_cols=64  Identities=25%  Similarity=0.525  Sum_probs=48.0

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCC---CCeEEEecCCEEEEEEccCCC----CCCeEEEEEEEeCCcceEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHGTDET  140 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~  140 (168)
                      +.|.|.+.|.|.|.+.|++++..+..   ........++  +|.|..+..    .|.|.|+|.|.|..|...+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~g--~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTMKPNTG--TLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEEeCCCc--eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            46899999999999999999988732   1222222344  677766653    3789999999999998654

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.47  E-value=9.5e-13  Score=77.30  Aligned_cols=64  Identities=28%  Similarity=0.503  Sum_probs=48.1

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECC---CCCeEEEecCCEEEEEEccCC----CCCCeEEEEEEEeCCcceEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCK----PEDSGEYKCVATNKHGTDET  140 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~----~~d~G~Y~C~a~n~~g~~~~  140 (168)
                      +.|.|.+.|.|.|.+.|++++..+.   ..+..+...++  .|.|..+.    ..|+|.|+|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSMRRRSG--TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEEeCCCc--eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            4689999999999999999998763   22333322344  68887764    24689999999999997654

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.47  E-value=4.3e-13  Score=78.83  Aligned_cols=64  Identities=28%  Similarity=0.590  Sum_probs=48.8

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCC----CCCeEEEEEEEeCCcceEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKP----EDSGEYKCVATNKHGTDET  140 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~----~d~G~Y~C~a~n~~g~~~~  140 (168)
                      +.|.|.+.|.|.|.+.|+|++..+...   ........+  .|.|..+..    .|+|.|+|.|.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~~~~~g--~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTMKPDSG--TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEEeCCCC--EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            468999999999999999999987532   222222344  677877653    6899999999999997543

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.47  E-value=4.3e-13  Score=78.85  Aligned_cols=67  Identities=21%  Similarity=0.379  Sum_probs=55.5

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCC-CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      |.++..+....+.+|++++|.|.+.+.|. +.+.|++++..+..       ..+  .|.|.++ .+|+|.|+|.|.|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-------~~~--~l~i~~~-~~dsG~Y~C~a~~~   68 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-------TTN--SYRIRAA-NNDSGEYRCQTQGS   68 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-------cCC--eEEEeec-ccCCEEeEEECCCC
Confidence            45677788889999999999999998875 47999999987632       222  6889999 99999999999875

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.46  E-value=2.8e-12  Score=76.51  Aligned_cols=80  Identities=28%  Similarity=0.507  Sum_probs=63.1

Q ss_pred             eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eE-EEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YS-MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ..+..|+.+.|.|.+.+.|.+.+.|++++..+.... .. .........|.|.++...|.|.|.|.+.|..|....++.|
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l   83 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKV   83 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEE
Confidence            345679999999999999999999999998775422 11 1112333468999999999999999999999998888777


Q ss_pred             EE
Q psy12421        145 IV  146 (168)
Q Consensus       145 ~v  146 (168)
                      .|
T Consensus        84 ~v   85 (85)
T cd05729          84 DV   85 (85)
T ss_pred             eC
Confidence            53

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.46  E-value=1.1e-12  Score=78.56  Aligned_cols=77  Identities=22%  Similarity=0.402  Sum_probs=62.3

Q ss_pred             ecCCeEEecCCcEEEEEEEec-cCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN  141 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  141 (168)
                      .+....+.+|++++|.|.+.+ .|.+.+.|++++..+....   ...++  .|.|.+++.+|+|.|.|.|.|..|....+
T Consensus         7 ~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---~~~~~--~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~   81 (85)
T cd05754           7 EPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA---MDFNG--ILTIRNVQLSDAGTYVCTGSNMLDTDEAT   81 (85)
T ss_pred             CCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc---cccCC--EEEECCCCHHHCEEEEEEEeccCCeEeEE
Confidence            455678889999999999875 7889999999886543321   11233  79999999999999999999999998887


Q ss_pred             EEE
Q psy12421        142 CVV  144 (168)
Q Consensus       142 ~~l  144 (168)
                      +.|
T Consensus        82 ~~l   84 (85)
T cd05754          82 ATL   84 (85)
T ss_pred             EEE
Confidence            765

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.46  E-value=8.3e-13  Score=77.97  Aligned_cols=69  Identities=33%  Similarity=0.576  Sum_probs=51.3

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECC---------CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELS---------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVV  144 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~---------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l  144 (168)
                      +.|.|.+.|.|.|.+.|++++....         ..++.. ..++  +|.|.++..+|+|.|.|.|.|..|.. ..++.|
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~-~~~~--~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l   77 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL-LSNG--SLLIKHVLEEDSGYYLCKVSNDVGADASKSMVL   77 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE-ecCC--eEEECcCCcccCEEEEEEEEeCCCCCCceEEEE
Confidence            4789999999999999999643211         112222 2334  79999999999999999999999986 556655


Q ss_pred             EE
Q psy12421        145 IV  146 (168)
Q Consensus       145 ~v  146 (168)
                      .|
T Consensus        78 ~~   79 (79)
T cd05734          78 TV   79 (79)
T ss_pred             eC
Confidence            43

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.46  E-value=4.9e-12  Score=77.28  Aligned_cols=87  Identities=18%  Similarity=0.352  Sum_probs=67.9

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCC---CCeEEEec----CCEEEEEEccCCCCC-CeEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSK---RDYSMSYS----DGVVSMEIIDCKPED-SGEY  127 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~---~~~~~~~~----~~~~~l~i~~~~~~d-~G~Y  127 (168)
                      ||.+ ...+...+.+|+++.|.|.+.+.|.| .+.|.+.+..+..   .++.+...    +..+.|.|.++...| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5666 56667889999999999999888877 5689888776643   34444332    346689999998877 6899


Q ss_pred             EEEEEeCCcceEEEEEE
Q psy12421        128 KCVATNKHGTDETNCVV  144 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l  144 (168)
                      .|.|.|.+|.....+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999998877765

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.45  E-value=1.2e-12  Score=78.19  Aligned_cols=75  Identities=16%  Similarity=0.268  Sum_probs=57.5

Q ss_pred             CCcEEEEEEEecc--CCCeeEEEeCCEECCCCCe----EE--EecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         72 RQTCKLLCCLSGK--PPPTVKWYKGNRELSKRDY----SM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        72 g~~~~l~C~~~g~--p~p~i~W~~~~~~~~~~~~----~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      |+.+.|.|.+.|.  |.|.+.|.+.+..+.....    ..  ........|.|.+++.+|+|.|.|.|.|..|....+..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            6889999999999  8899999987765432110    00  01112347999999999999999999999999888888


Q ss_pred             EEE
Q psy12421        144 VIV  146 (168)
Q Consensus       144 l~v  146 (168)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            765

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.44  E-value=2.1e-12  Score=75.64  Aligned_cols=69  Identities=26%  Similarity=0.527  Sum_probs=52.8

Q ss_pred             EEEEEEEec-cCCCeeEEEeCCEECCCC---C--eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         75 CKLLCCLSG-KPPPTVKWYKGNRELSKR---D--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~---~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      +.|.|.+.+ .|.+.+.|++++..+...   .  +..........|.|.++...|+|.|+|.+.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            368999874 688999999999887532   1  22222233457999999999999999999999998776653

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.43  E-value=2.7e-12  Score=77.53  Aligned_cols=81  Identities=15%  Similarity=0.264  Sum_probs=61.0

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC-cceEE
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH-GTDET  140 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~  140 (168)
                      +...+.+|+.+.|.|.+.+ |.+.+.|++++..+...   .........  .|.|.+++.+|+|.|.|.|.+.. +....
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~   80 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVTED--GLLIRSVSPADAGVYTCQSVEHGFKQTLA   80 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEcCC--CEEEccCCHHHCEEEEEEEecCccceeEe
Confidence            3466788999999999877 88999999998766542   122222333  58899999999999999998764 44566


Q ss_pred             EEEEEEee
Q psy12421        141 NCVVIVES  148 (168)
Q Consensus       141 ~~~l~v~~  148 (168)
                      +..|.|.+
T Consensus        81 ~~~l~V~~   88 (89)
T cd04979          81 TYSLNVLE   88 (89)
T ss_pred             EEEEEEec
Confidence            77777653

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.43  E-value=6.6e-12  Score=76.55  Aligned_cols=69  Identities=17%  Similarity=0.351  Sum_probs=53.6

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEEC---------CCCCeEEEec-CCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---------SKRDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~---------~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+..+.+|+++.|.|.+.+.|.|.+.|++.+..+         ...++.+... .....|.|.++..+|.|.|+|.+..
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t   83 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIFT   83 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEEe
Confidence            4678889999999999999999999999876532         1223332222 2245899999999999999999987

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.42  E-value=3.2e-12  Score=77.48  Aligned_cols=76  Identities=22%  Similarity=0.404  Sum_probs=59.8

Q ss_pred             eEEecCCcEEEEEEEec-----cCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421         67 RVMQVRQTCKLLCCLSG-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN  141 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  141 (168)
                      ..+.+|....|.|...+     .|.|.+.|+|++..+......+. .++  .|.|.++..+|+|.|+|.+.|..+.....
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~-~~~--~L~I~~v~~~DsG~YtC~~~n~~~~~~~~   81 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV-KGS--KLLIQNVTEEDAGNYTCKLTFTHNGKQYN   81 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe-cCC--EEEEeeCChhhCEEEEEEEEecCCCEEEE
Confidence            45678999999998653     25789999999999876554433 344  79999999999999999999998876555


Q ss_pred             EEEE
Q psy12421        142 CVVI  145 (168)
Q Consensus       142 ~~l~  145 (168)
                      +...
T Consensus        82 ~t~t   85 (92)
T cd05757          82 VTRT   85 (92)
T ss_pred             EEEE
Confidence            5433

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.42  E-value=5.6e-12  Score=76.99  Aligned_cols=82  Identities=16%  Similarity=0.279  Sum_probs=59.5

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE---------ECCCCCeEEEec-CCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR---------ELSKRDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~---------~~~~~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      +++..+.+|+++.|.|.+.+.|.+.+.|++.+.         .+...++..... ....+|.|.+++.+|+|.|.|.+.+
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t   83 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLFT   83 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeEe
Confidence            456788999999999999999999999986321         122334443222 3445899999999999999999998


Q ss_pred             CCcceEEEEEEEE
Q psy12421        134 KHGTDETNCVVIV  146 (168)
Q Consensus       134 ~~g~~~~~~~l~v  146 (168)
                      .. .......|.|
T Consensus        84 ~~-~~~~~~~l~v   95 (95)
T cd07701          84 MP-VKTSKAYLTV   95 (95)
T ss_pred             ec-CccEEEEEEC
Confidence            53 3355555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.41  E-value=6.1e-12  Score=75.11  Aligned_cols=76  Identities=17%  Similarity=0.291  Sum_probs=55.6

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCCe---EE--EecCCEEEEEEccCCCCCCeEEEEEEEeCCc--ceEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG--TDETNCVV  144 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~---~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~l  144 (168)
                      |+++.|.|.+.+.|.+.+.|++.+........   ..  ......+.|.|.+++.+|+|.|.|.|.|..+  ....++.|
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~i   80 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVNI   80 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEEE
Confidence            78899999999999999999987653321110   11  1111245799999999999999999999876  45666666


Q ss_pred             EEe
Q psy12421        145 IVE  147 (168)
Q Consensus       145 ~v~  147 (168)
                      .|.
T Consensus        81 ~V~   83 (84)
T cd05861          81 TVH   83 (84)
T ss_pred             EEe
Confidence            664

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.40  E-value=2.3e-12  Score=90.52  Aligned_cols=109  Identities=17%  Similarity=0.182  Sum_probs=72.8

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEe-----ccCCCe
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLS-----GKPPPT   88 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-----g~p~p~   88 (168)
                      ...|++.++...|+|.  |.|   .+.+...-........+..      .+.+..+.+|+.+.|.|.+.     +.|.|.
T Consensus        97 ~~~L~I~~v~~~DsG~--Y~C---~a~N~~~~~~~~i~L~V~~------~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~  165 (227)
T PHA02826         97 SENLWIGNVINIDEGI--YIC---TISSGNICEESTIRLTFDS------GTINYQFNSGKDSKLHCYGTDGISSTFKDYT  165 (227)
T ss_pred             CCeEEECCCChHHCEE--EEE---EEEECCcceEEEEEEEEec------CCccceEecCCCEEEEeeCCCCccccCCCce
Confidence            3578999999999776  432   3333221111111111111      22345677899999999976     346799


Q ss_pred             eEEEeCCEECCCC-CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         89 VKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        89 i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +.|+|++..+... ++.+...++  .|.|.+++.+|+|.|+|.|....
T Consensus       166 I~WyKng~~l~~~~r~~~~~~~~--~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        166 LTWYKNGNIVLYTDRIQLRNNNS--TLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             EEEEECCEECCCCCCEEEeCCCC--EEEECcCCHHhCEEEEEEEEEeE
Confidence            9999999988643 333332333  79999999999999999999864

>KOG4221|consensus

Probab=99.36  E-value=5.6e-12  Score=102.97  Aligned_cols=95  Identities=27%  Similarity=0.431  Sum_probs=78.0

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      -.|...+....+..|+.+.|.|.+.|.|.|.+.|.+++..+.-..+.+...++ ..|.|.+++..|+|.|+|.|.|....
T Consensus       238 ~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~-~slliS~a~~~dSg~YtC~Atn~~D~  316 (1381)
T KOG4221|consen  238 LVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGG-SSLLISNATDDDSGKYTCRATNTNDS  316 (1381)
T ss_pred             eeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEecc-cceEEeccccccCceEEEEecCCCcc
Confidence            34677788889999999999999999999999999999988765545444322 27999999999999999999997666


Q ss_pred             eEEEEEEEEeeCCCch
Q psy12421        138 DETNCVVIVESEEESK  153 (168)
Q Consensus       138 ~~~~~~l~v~~~p~~~  153 (168)
                      ..++..|.|..+|..+
T Consensus       317 idasaev~V~a~P~~~  332 (1381)
T KOG4221|consen  317 IDASAEVTVLAPPGFT  332 (1381)
T ss_pred             cccceEEEEEcCCCCC
Confidence            6777888887775543

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.30  E-value=4.2e-11  Score=66.77  Aligned_cols=63  Identities=37%  Similarity=0.665  Sum_probs=50.6

Q ss_pred             cCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      +|+++.|.|.+.+.|.+.+.|++++..+.. .........  .|.|.++...|+|.|.|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~-~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPE-SNRLSASGS--TLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCC-CCEEecCCc--EEEEeeCCcccCEEEEEEEecCCC
Confidence            478899999988899999999999887762 222222223  799999999999999999998765

>smart00410 IG_like Immunoglobulin like

Probab=99.27  E-value=6e-10  Score=65.72  Aligned_cols=81  Identities=35%  Similarity=0.667  Sum_probs=64.3

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeC-CEECC-CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKG-NRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~-~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ..............|.|.++...|.|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45677899999999999888999999998 77665 33444444443457999999999999999999998888777666


Q ss_pred             EEE
Q psy12421        144 VIV  146 (168)
Q Consensus       144 l~v  146 (168)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00410       83 LTV   85 (86)
T ss_pred             EEE
Confidence            655

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=99.27  E-value=6e-10  Score=65.72  Aligned_cols=81  Identities=35%  Similarity=0.667  Sum_probs=64.3

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeC-CEECC-CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKG-NRELS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~-~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      ...+..|+.+.|.|.+.+.+.+.+.|+++ +..+. ..............|.|.++...|.|.|.|.+.+..+.....+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~   82 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVTPEDSGTYTCAATNSSGSASSTTT   82 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeeccccCeEEEEEEEcCCCeEEEEEE
Confidence            45677899999999999888999999998 77665 33444444443457999999999999999999998888777666


Q ss_pred             EEE
Q psy12421        144 VIV  146 (168)
Q Consensus       144 l~v  146 (168)
                      |.|
T Consensus        83 l~V   85 (86)
T smart00409       83 LTV   85 (86)
T ss_pred             EEE
Confidence            655

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.26  E-value=6.8e-11  Score=70.39  Aligned_cols=68  Identities=22%  Similarity=0.312  Sum_probs=53.6

Q ss_pred             cCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         64 LRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      +....+.+|+.++|.|.+. +.+.+.+.|+|++..+....     ...  .|.|.+++.+|+|.|.|.+.|..|..
T Consensus         6 ~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~-----~~~--~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           6 VPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH-----SNS--NLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             CCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC-----CCc--eEEECccCHHHCEEEEEEEEeCCcee
Confidence            3345788999999999985 46677899999997664211     122  69999999999999999999998753

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.25  E-value=5.6e-11  Score=72.17  Aligned_cols=71  Identities=23%  Similarity=0.282  Sum_probs=52.9

Q ss_pred             EEecCCcEEEEEEEeccCCCeeEEEeCCEEC-CC--------------CCeEEEe---cCCEEEEEEccCCCCCCeEEEE
Q psy12421         68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SK--------------RDYSMSY---SDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~-~~--------------~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      .+.+|+++.|.|.+.+.+.+.+.|+++++.. ..              .++....   ..+...|.|.+++.+|+|.|.|
T Consensus         3 ~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~C   82 (94)
T cd07690           3 LGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYIC   82 (94)
T ss_pred             EeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEEE
Confidence            4668999999999999999999999766322 10              1111111   3345579999999999999999


Q ss_pred             EEEeCCcce
Q psy12421        130 VATNKHGTD  138 (168)
Q Consensus       130 ~a~n~~g~~  138 (168)
                      .+.|..+..
T Consensus        83 ~v~~~~~~~   91 (94)
T cd07690          83 EVEDKKEEV   91 (94)
T ss_pred             EECCccceE
Confidence            999887653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.25  E-value=1.9e-10  Score=85.29  Aligned_cols=118  Identities=15%  Similarity=0.136  Sum_probs=77.2

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCc-----ceeeEee--ecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC-
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREP-----LQITFWQ--ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-   86 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-   86 (168)
                      ..|.+.+++..|.|.+.+  .   +.+...     ....+..  .....||.+ ..+....+..|+.+.|.|.+.|.|. 
T Consensus       177 ~~L~i~~v~~~d~G~Y~C--~---~~n~~g~~~~~~t~~v~l~V~~~~~pp~~-~~p~~~~~~~G~~v~L~C~a~g~P~~  250 (326)
T PHA02785        177 GIITIEDVRKNDAGYYTC--V---LKYIYGDKTYNVTRIVKLEVRDRIIPPTM-QLPEGVVTSIGSNLTIACRVSLRPPT  250 (326)
T ss_pred             CeEEEeecChhhCeEEEE--E---EEeccCCEEEeEEEEEEEEEeccCCCcee-cCCCcEEecCCCcEEEEEEEECCCCC
Confidence            467888999999777433  2   222211     1111111  112345554 3456777888999999999999886 


Q ss_pred             --CeeEEEeCCEECCCC----CeEEEecC----------CEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         87 --PTVKWYKGNRELSKR----DYSMSYSD----------GVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        87 --p~i~W~~~~~~~~~~----~~~~~~~~----------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                        +.+.|+++|..+...    ...+...+          ....|.|.+++.+|.|.|+|.|.|..|..
T Consensus       251 ~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        251 TDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             CCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence              489999999987531    11111100          12369999999999999999999988544

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.24  E-value=4.7e-11  Score=72.51  Aligned_cols=71  Identities=17%  Similarity=0.303  Sum_probs=55.5

Q ss_pred             CeEEecCCcEEEEEE-EeccCCCeeEEEeCCEEC--C-CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         66 PRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNREL--S-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~--~-~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      ...+.+|+.+.|.|. -.|.|.|.+.|++++..+  . ..+..+...+|  .|.|.++..+|+|.|.|.|.|.....
T Consensus        12 ~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G--~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          12 EVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG--NLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             ceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC--cEEEeecCHhhCceeEEEEEecccCC
Confidence            356788999999996 458999999999998753  1 22333333456  79999999999999999999987543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.24  E-value=2.1e-10  Score=69.45  Aligned_cols=79  Identities=16%  Similarity=0.251  Sum_probs=56.2

Q ss_pred             eEEecCCcEEEEEEEeccCCCeeEEEeCCE--ECC---CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE-eCCcceEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--ELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT-NKHGTDET  140 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~  140 (168)
                      ....+|+++.|.|.. +.|.|.+.||++..  ...   ..........+  .|.|.++..+|+|.|+|.+. |..+....
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~~~~--~L~I~~~~~~DsG~Y~C~a~~~~~~~~~~   82 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIHTER--GLLLRSLQRSDAGVYTCTAVEHSFSQTLA   82 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEEecC--eEEEeeCChhHCEEEEEEEEccCCeEEEE
Confidence            346789999999996 58999999998432  111   01112222333  69999999999999999998 56776777


Q ss_pred             EEEEEEee
Q psy12421        141 NCVVIVES  148 (168)
Q Consensus       141 ~~~l~v~~  148 (168)
                      ...|.|..
T Consensus        83 ~~~l~v~~   90 (91)
T cd05871          83 KYTLHVIE   90 (91)
T ss_pred             EEEEEEec
Confidence            77777753

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.23  E-value=3.1e-10  Score=69.30  Aligned_cols=80  Identities=18%  Similarity=0.317  Sum_probs=56.4

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEE---------CCCCCeEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE---------LSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~---------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ++..+.+|+++.|.|.+.+.+.+.+.|++.+..         ....++.... ......|.|.+++.+|+|.|.|.+.+.
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   84 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLYTM   84 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEecC
Confidence            456788999999999999888999999853221         1223333321 223457999999999999999999876


Q ss_pred             CcceEEEEEEE
Q psy12421        135 HGTDETNCVVI  145 (168)
Q Consensus       135 ~g~~~~~~~l~  145 (168)
                      .. ......|.
T Consensus        85 ~~-~~~~~~~~   94 (95)
T cd05717          85 PV-QTAKATVT   94 (95)
T ss_pred             CC-ceEEEEEE
Confidence            53 34444444

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>KOG4222|consensus

Probab=99.21  E-value=2.3e-11  Score=98.97  Aligned_cols=137  Identities=23%  Similarity=0.323  Sum_probs=108.9

Q ss_pred             CCCCCCceeEEEEeCCCCCCCCCCcccce-eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCee
Q psy12421         11 LRYPQDNPRLRTRAIPKTIPAYVPEVQQV-RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTV   89 (168)
Q Consensus        11 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i   89 (168)
                      ...-..+.+.|+...|.|.+.+...++.- +...+.++     .++.+|.|...+.+..+..|..+.+.|.+.|.|.|.+
T Consensus       183 lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~l-----sv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~V  257 (1281)
T KOG4222|consen  183 LISGGNLLISNVRKSDEGTYACVATNMVGERESIPARL-----SVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTV  257 (1281)
T ss_pred             EecCCcEEEeccccCCCceeeeeeccccccccccccee-----eeccCCccccccccceeecccccccccccCCCCCCce
Confidence            35666778999999998875553332211 11222333     4457899999999999999999999999999999999


Q ss_pred             EEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchh
Q psy12421         90 KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus        90 ~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      .|.|++..++..++.+.....  +|.|..+...|.|.|.|.+.|..|....+..|.|..+|....
T Consensus       258 rwkk~~~~~P~~ry~i~~d~q--tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~k  320 (1281)
T KOG4222|consen  258 RWKKDDPSLPRSRYSILDDTQ--TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGK  320 (1281)
T ss_pred             eeeccCCCCCccceeeeeccc--cccccccCCCcccceeeeccccccccccccceEEecCccccc
Confidence            999988888777776665544  799999999999999999999999999999999998876543

>KOG4194|consensus

Probab=99.20  E-value=1.3e-10  Score=89.83  Aligned_cols=126  Identities=21%  Similarity=0.351  Sum_probs=89.2

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC-CeeEEEeC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKG   94 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~   94 (168)
                      .+++.||..+|.|.  |   .++..+.......--...+...|.|.....+..+..|+++.|.|.+.|.|. |.+.|+|+
T Consensus       670 ~f~Itnvk~eD~Gi--Y---tC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~k~  744 (873)
T KOG4194|consen  670 VFFITNVKIEDQGI--Y---TCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWFKE  744 (873)
T ss_pred             EEEEecccccccce--e---EEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCccccccCC
Confidence            34567888888666  4   233333333222222234445788888899999999999999999999887 99999999


Q ss_pred             CEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         95 NRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      ++++.-.. +....++...|.+.+...+|+|.|+|...|..|....-..+.+.
T Consensus       745 d~pil~t~-rh~f~d~dQllvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~  796 (873)
T KOG4194|consen  745 DKPILITE-RHTFPDGDQLLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVY  796 (873)
T ss_pred             CCceEEee-cccCCCCCeEEEEEehhhhhcceEEEEEEeeccceeeEEEEEEe
Confidence            88764321 11123343468888889999999999999999987666555543

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.18  E-value=3.6e-10  Score=66.36  Aligned_cols=78  Identities=35%  Similarity=0.681  Sum_probs=57.5

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      |.+....  ..+..|+.+.|.|.+.+.|.+.+.|++++..+..       ...  .+.+..+...|.|.|.|.+.+..+.
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~-------~~~--~~~~~~~~~~~~g~y~C~~~~~~~~   70 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINS-------SQN--GLFIPNVSPEDSGNYTCRASNGSGS   70 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEE-------ESS--EEEESSEEGGGTEEEEEEEEETTEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeee-------eee--eeeeeeeccccCEEEEEEEEeCCCC
Confidence            4554333  5688999999999999999999999998866552       111  2667888899999999999997653


Q ss_pred             -eEEEEEEEE
Q psy12421        138 -DETNCVVIV  146 (168)
Q Consensus       138 -~~~~~~l~v  146 (168)
                       ...++.|.|
T Consensus        71 ~~s~~~~v~V   80 (80)
T PF13895_consen   71 NTSTSVNVTV   80 (80)
T ss_dssp             EEEEEEEEEE
T ss_pred             eEeeeEEeeC
Confidence             344555543

...

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.18  E-value=3.5e-10  Score=68.69  Aligned_cols=72  Identities=26%  Similarity=0.443  Sum_probs=53.1

Q ss_pred             eEEecCCcEEEEEEE-e----ccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         67 RVMQVRQTCKLLCCL-S----GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~-~----g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      ..+.+|....|.|+- .    ..+.|.+.|||++..+...........+...|.|.++..+|+|.|+|.+.+..|..
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYSLKGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEecCCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            456678899999972 2    34678999999999886433222221112269999999999999999999997664

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.17  E-value=2.3e-10  Score=84.84  Aligned_cols=118  Identities=19%  Similarity=0.313  Sum_probs=74.0

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEE-----EeccCCCeeE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCC-----LSGKPPPTVK   90 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-----~~g~p~p~i~   90 (168)
                      .+++.++...|+|.+.+...+........+.+.+...   .+|.+........+.+|..+.+.|.     ..+.|.|.+.
T Consensus        83 ~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V~~~---~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~  159 (326)
T PHA02785         83 NMLILNPTQSDSGIYICITKNETYCDMMSLNLTIVSV---SESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADII  159 (326)
T ss_pred             eEEEcccCcccCeEEEEEEECCCcceEEEEEEEEEec---CCCccceeeccceecccCcEEEECCChhhcccCCCCceEE
Confidence            4788888888877643322222111122233333321   2233333334456778999999997     3467899999


Q ss_pred             EEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE
Q psy12421         91 WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET  140 (168)
Q Consensus        91 W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  140 (168)
                      |+++.. +...++.. ..++  .|.|.+++..|.|.|+|.+.|..|....
T Consensus       160 W~k~~~-~~~~r~~~-~~~~--~L~i~~v~~~d~G~Y~C~~~n~~g~~~~  205 (326)
T PHA02785        160 WSGHRR-LRNKRLKQ-RTPG--IITIEDVRKNDAGYYTCVLKYIYGDKTY  205 (326)
T ss_pred             EccCCc-cCCcceEe-cCCC--eEEEeecChhhCeEEEEEEEeccCCEEE
Confidence            998643 33333222 2233  7999999999999999999999887543

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.16  E-value=1.7e-10  Score=69.97  Aligned_cols=73  Identities=16%  Similarity=0.267  Sum_probs=56.1

Q ss_pred             cCCeEEecCCcEEEEEE-EeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCe-EEEEEEEeCCcce
Q psy12421         64 LRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTD  138 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~  138 (168)
                      .+...+.+|+.+.|.|. ..|.|.|.+.|++++..... ........+|  .|.|.++...|+| .|.|.|.|.....
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~~~G--nL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMGQNG--NLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEECCCc--eEEEEEEehhhCCCCeEEEEEcccccc
Confidence            35578889999999996 68999999999987654322 2222232445  7999999999999 7999999986443

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.16  E-value=5.9e-10  Score=66.77  Aligned_cols=76  Identities=17%  Similarity=0.305  Sum_probs=55.0

Q ss_pred             CCcEEEEEEEeccCC--CeeEEEeCCEECCC----CC--eEE-EecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         72 RQTCKLLCCLSGKPP--PTVKWYKGNRELSK----RD--YSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        72 g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~----~~--~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      |+.+.|.|.+.+.+.  ..+.|...+.....    ..  ... ......+.|.|.+++..|+|.|+|.|.|..|....+.
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t   80 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNST   80 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEecccE
Confidence            688999999987664  47799876653311    11  000 0112244799999999999999999999999888888


Q ss_pred             EEEEe
Q psy12421        143 VVIVE  147 (168)
Q Consensus       143 ~l~v~  147 (168)
                      .|.|.
T Consensus        81 ~~~V~   85 (86)
T cd05862          81 IVIVH   85 (86)
T ss_pred             EEEEe
Confidence            88775

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.12  E-value=2.7e-09  Score=65.05  Aligned_cols=82  Identities=18%  Similarity=0.313  Sum_probs=65.0

Q ss_pred             CeEEecCCcEEEEEEEeccCCCe-eEEEeCCEECCCC-CeEEEecC-----CEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKR-DYSMSYSD-----GVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~-~~~~~~~~-----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      ...+.+|+.+.|.|...+.|.|. +.|.+.+..+... ........     -.+.|.+..++.+|.|.|+|.|.|..+..
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            36788999999999999999998 9999988765331 10111111     12469999999999999999999999999


Q ss_pred             EEEEEEEEe
Q psy12421        139 ETNCVVIVE  147 (168)
Q Consensus       139 ~~~~~l~v~  147 (168)
                      ..++.|.|.
T Consensus        92 s~tF~l~v~  100 (101)
T cd05860          92 SVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEe
Confidence            999988774

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.10  E-value=3.7e-10  Score=63.70  Aligned_cols=60  Identities=35%  Similarity=0.699  Sum_probs=45.1

Q ss_pred             CCcEEEEEEE-eccCCCeeEEEeCCEECCCCCeEEEecCCEE---EEEEccCCCCCCeEEEEEE
Q psy12421         72 RQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        72 g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~---~l~i~~~~~~d~G~Y~C~a  131 (168)
                      |+++.|.|.+ .+.+.+.+.|++++..............+..   .|.|.+++.+|+|.|.|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7889999999 7788999999999876554332222222211   2999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>KOG4221|consensus

Probab=99.03  E-value=4.4e-09  Score=86.58  Aligned_cols=132  Identities=19%  Similarity=0.292  Sum_probs=95.6

Q ss_pred             CCCCCceeEEEEe-----CCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC
Q psy12421         12 RYPQDNPRLRTRA-----IPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP   86 (168)
Q Consensus        12 ~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~   86 (168)
                      =..+.+|+.++..     .+.+.  |.|....- ....+-.+.........+.|...+.+..+..|+++.|.|.+.+.|.
T Consensus        93 LsNgSl~i~~v~~~kh~~~~eg~--Yqc~atv~-~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~  169 (1381)
T KOG4221|consen   93 LSNGSLYISSVLASKHNKVDEGV--YQCLATVE-DVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPV  169 (1381)
T ss_pred             ccCCceeEeeecccccccccCce--EEEEEEcc-ccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccC
Confidence            3456788888887     56555  43332222 2222222222234456778888888999999999999999999999


Q ss_pred             CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EEEEEEEEee
Q psy12421         87 PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVES  148 (168)
Q Consensus        87 p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  148 (168)
                      |.+.|.++..++....+.+...+|  .|.|.++...|.|.|.|.+.+..-.. ...+.|.|..
T Consensus       170 p~i~w~kn~~pl~~~~r~i~lpsG--~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s  230 (1381)
T KOG4221|consen  170 PTIMWLKNDQPLPLDSRVIVLPSG--ALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLS  230 (1381)
T ss_pred             ceeEEecccccccCCCcEEEcCCC--cEEecccccCCCceEEEEEecCCcCCccceeEEEecC
Confidence            999999999977765556666677  79999999999999999999876443 3355666663

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.02  E-value=5.7e-09  Score=62.02  Aligned_cols=76  Identities=21%  Similarity=0.333  Sum_probs=55.7

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      +...+..|+.+.|.|...+ +.+.+.|++++..+...........+   |.|..++..|+|.|.|.+. ..|..+.-..+
T Consensus         4 ~~~tv~~g~~v~L~C~~~s-~~A~v~W~~ng~~l~~~~r~~~~~~G---LlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y   78 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRS-NLASPVWLFNGTPLNAQFSYRVGTDG---LLILVTSPEHSGTYRCYSE-EEGFQQLVASY   78 (85)
T ss_pred             eEEEEecCCCEEEECCCCC-CCccEEEEECCcccCCCcceEEeCCC---CEEEECCHhhCEEEEEEEe-cCCCeEEEEEE
Confidence            3467889999999999866 47799999999988654333333443   7799999999999999977 34544444433


Q ss_pred             E
Q psy12421        145 I  145 (168)
Q Consensus       145 ~  145 (168)
                      .
T Consensus        79 ~   79 (85)
T cd05872          79 S   79 (85)
T ss_pred             E
Confidence            3

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.02  E-value=2.9e-09  Score=62.47  Aligned_cols=62  Identities=19%  Similarity=0.335  Sum_probs=47.0

Q ss_pred             EEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecC----CEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         75 CKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        75 ~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      +.|.|... ++|++.+.||+++..+....... ..+    ....|.+......|.+.|.|.|.|..+.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~-~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQ-ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccc-cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            68999976 69999999999999986532110 011    1225888888999999999999999765

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.99  E-value=1.3e-08  Score=63.52  Aligned_cols=74  Identities=20%  Similarity=0.275  Sum_probs=54.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEE---------------CCCCCeEEEec--CCEEEEEEccCCCCCCe
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE---------------LSKRDYSMSYS--DGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~---------------~~~~~~~~~~~--~~~~~l~i~~~~~~d~G  125 (168)
                      .+....+.+|+++.|.|.+.+.+...+.||+....               ....++.+...  .+...|.|.+++.+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG   83 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDSA   83 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHCE
Confidence            45567888999999999998878889999985321               01123333322  35668999999999999


Q ss_pred             EEEEEEEeCCc
Q psy12421        126 EYKCVATNKHG  136 (168)
Q Consensus       126 ~Y~C~a~n~~g  136 (168)
                      .|.|.+.+..+
T Consensus        84 ~Y~C~~~~~~~   94 (109)
T cd04983          84 VYFCALSESGG   94 (109)
T ss_pred             EEEEEEecCCC
Confidence            99999987643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.97  E-value=1.1e-08  Score=62.54  Aligned_cols=79  Identities=20%  Similarity=0.314  Sum_probs=55.9

Q ss_pred             CeEEecCCcEEEEEEE-e----------ccCCCeeEEEeCCEECCCCC------eEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         66 PRVMQVRQTCKLLCCL-S----------GKPPPTVKWYKGNRELSKRD------YSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~-~----------g~p~p~i~W~~~~~~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      ...+.+|+.+.|.|.. .          ......+.|+|++..+....      .++...+.  .|.|..+..+|+|.|+
T Consensus         9 ~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~--~Lwf~Pa~~eDSG~Y~   86 (104)
T cd05896           9 KYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED--SIWFRPAELQDSGLYT   86 (104)
T ss_pred             eEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC--EEEEEeCChhhCeEEE
Confidence            3567789999999985 1          22344799999975443211      13333444  7999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEE
Q psy12421        129 CVATNKHGTDETNCVVIV  146 (168)
Q Consensus       129 C~a~n~~g~~~~~~~l~v  146 (168)
                      |.+.|...-...++.|.|
T Consensus        87 C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          87 CVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEECCCCcceEEEEEEEC
Confidence            999998766666665543

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.97  E-value=2.6e-09  Score=61.74  Aligned_cols=74  Identities=27%  Similarity=0.554  Sum_probs=49.6

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccC-CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      +|.+...+.......+. +.|.|.+.+.+ .+.+.|+ ....... ............|.+.++..+|.|.|+|.|.|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~-~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFN-SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEE-EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCcee-eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            46666666655555554 99999999877 8899999 1111100 00111122233799999999999999999987

...

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.93  E-value=1.1e-08  Score=64.03  Aligned_cols=73  Identities=25%  Similarity=0.366  Sum_probs=52.8

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC-----------------CCCCeEEEecC-CEEEEEEccCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL-----------------SKRDYSMSYSD-GVVSMEIIDCKP  121 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~-----------------~~~~~~~~~~~-~~~~l~i~~~~~  121 (168)
                      +.+....+.+|++++|.|...+ +.+.+.|||...  .+                 ...++...... ....|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            3455678899999999999988 778999998642  11                 01222222222 345799999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy12421        122 EDSGEYKCVATNKH  135 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~  135 (168)
                      +|+|.|.|.+.+..
T Consensus        82 ~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          82 EDSAVYLCASSLGG   95 (110)
T ss_pred             hhCEEEEEEeeCCC
Confidence            99999999987653

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=98.90  E-value=1.8e-08  Score=70.97  Aligned_cols=82  Identities=18%  Similarity=0.225  Sum_probs=60.2

Q ss_pred             CCeEEecCCcEEEEEEEeccC-----------CCeeEEEeCCEEC----CCCC--------eEEEecCCEEEEEEccCCC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKP-----------PPTVKWYKGNREL----SKRD--------YSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p-----------~p~i~W~~~~~~~----~~~~--------~~~~~~~~~~~l~i~~~~~  121 (168)
                      ....+.+|+.+.|.|.+.+.|           .+.+.|+|.+...    ...+        ......++  .|.|.+++.
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~--~L~I~~v~~  107 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSE--NLWIGNVIN  107 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccceecCCC--eEEECCCCh
Confidence            346678999999999987644           4589999987542    0010        01111123  799999999


Q ss_pred             CCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        122 EDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      .|+|.|.|.|.|..|....++.|.|..
T Consensus       108 ~DsG~Y~C~a~N~~~~~~~~i~L~V~~  134 (227)
T PHA02826        108 IDEGIYICTISSGNICEESTIRLTFDS  134 (227)
T ss_pred             HHCEEEEEEEEECCcceEEEEEEEEec
Confidence            999999999999988888888888753

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.90  E-value=4.2e-08  Score=58.12  Aligned_cols=70  Identities=26%  Similarity=0.515  Sum_probs=48.0

Q ss_pred             EEEEEEEec-cCCCeeEEEeCCEECCCCCeEE-EecCC-----EEEEEEccCCCCCCeEEEEEEEeCCcc--eEEEEEE
Q psy12421         75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSM-SYSDG-----VVSMEIIDCKPEDSGEYKCVATNKHGT--DETNCVV  144 (168)
Q Consensus        75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~-~~~~~-----~~~l~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l  144 (168)
                      +.|.|.+.| .|.+.+.|++++..+....... ...++     .+.|.+......|.|.|+|.|.|....  ...++.|
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~l   80 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVTL   80 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEEE
Confidence            579999987 7889999999999876532211 11121     235777777777889999999997544  3444444

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.90  E-value=6.9e-09  Score=62.79  Aligned_cols=73  Identities=15%  Similarity=0.234  Sum_probs=52.9

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      |.+...+ +..+..|++++|.|... .+...+.|+++|.......  .........|.|.+++.+|+|.|+|...+.
T Consensus         3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~--~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751           3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK--PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc--cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            4555444 45788999999999874 6778899999987543211  111222336999999999999999999886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.89  E-value=1e-07  Score=57.94  Aligned_cols=70  Identities=13%  Similarity=0.289  Sum_probs=53.8

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEE---------CCCCCeEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE---------LSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~---------~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ++..+.+|+++.|.|.+.+.....+.|++-+..         ....++.... .+...+|.|.+++.+|+|.|.|.+...
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            457788999999999999887777888876533         2334555544 345667999999999999999988753

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.88  E-value=4.8e-08  Score=61.26  Aligned_cols=78  Identities=19%  Similarity=0.349  Sum_probs=54.8

Q ss_pred             cCCcEEEEEEEeccC------------CCeeEEEeCCE-----ECC--------C----CCeEEEe---cCCEEEEEEcc
Q psy12421         71 VRQTCKLLCCLSGKP------------PPTVKWYKGNR-----ELS--------K----RDYSMSY---SDGVVSMEIID  118 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p------------~p~i~W~~~~~-----~~~--------~----~~~~~~~---~~~~~~l~i~~  118 (168)
                      .|++++|.|......            .+.+.|+|...     .+.        .    .+..+..   ..+..+|.|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            488999999987533            46899998521     010        0    1222221   22455899999


Q ss_pred             CCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.+.....+....|.|..
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998888888777777753

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.83  E-value=9.6e-08  Score=59.39  Aligned_cols=78  Identities=23%  Similarity=0.403  Sum_probs=55.0

Q ss_pred             cCCcEEEEEEEeccC------CCeeEEEeCC-----E-EC---CCC------Ce--EEE---ecCCEEEEEEccCCCCCC
Q psy12421         71 VRQTCKLLCCLSGKP------PPTVKWYKGN-----R-EL---SKR------DY--SMS---YSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p------~p~i~W~~~~-----~-~~---~~~------~~--~~~---~~~~~~~l~i~~~~~~d~  124 (168)
                      .|++++|.|.....+      .+.+.|++..     . .+   ...      .+  ...   ...+..+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            488999999987653      5689999862     1 00   000      01  111   123455799999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEee
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999877777788887764

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.83  E-value=6.6e-08  Score=59.94  Aligned_cols=81  Identities=19%  Similarity=0.252  Sum_probs=54.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEEC---------C----------CCCeEEEecCCEEEEEEccCCCCC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---------S----------KRDYSMSYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~---------~----------~~~~~~~~~~~~~~l~i~~~~~~d  123 (168)
                      .+.+..+.+|+++.|.|.........+.|+|.....         .          ...+.....++  +|.|.+++..|
T Consensus         4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng--SL~I~~v~~~D   81 (105)
T cd05774           4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG--SLLIQNVTQKD   81 (105)
T ss_pred             eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC--cEEEecCCccc
Confidence            344556778999999997544445589999963211         0          01112233345  79999999999


Q ss_pred             CeEEEEEEEeCC-cceEEEEEEE
Q psy12421        124 SGEYKCVATNKH-GTDETNCVVI  145 (168)
Q Consensus       124 ~G~Y~C~a~n~~-g~~~~~~~l~  145 (168)
                      +|.|.|.+.+.. ........|.
T Consensus        82 ~G~Y~~~v~~~~~~~~~~~v~l~  104 (105)
T cd05774          82 TGFYTLQTITTNFQVEQATVHLQ  104 (105)
T ss_pred             CEEEEEEEEeCCccEEEEEEEEE
Confidence            999999999876 3445455554

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>KOG4222|consensus

Probab=98.83  E-value=5.3e-09  Score=85.68  Aligned_cols=138  Identities=20%  Similarity=0.297  Sum_probs=99.6

Q ss_pred             CCCCCCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEee----ecccCCCeEEeecCCeEEecCCcEEEEEEEeccC
Q psy12421         10 SLRYPQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQ----ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKP   85 (168)
Q Consensus        10 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p   85 (168)
                      ++.-.+++-.-+++..|.+++.+  ...+.....-....+.+    +...-+|.+...+.+..+.++.++.|.|.+.|.|
T Consensus       371 svs~~g~L~it~v~~~d~g~Yvc--q~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~atg~P  448 (1281)
T KOG4222|consen  371 SVSPTGTLTITNVRQSDEGYYVC--QTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSATGAP  448 (1281)
T ss_pred             eecCCCCcccccccccccceEee--cccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhhhCCC
Confidence            45666788899999999887444  43332222211111111    1213355666788888999999999999999999


Q ss_pred             CCeeEEEeCCEECCCCCeEE-EecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         86 PPTVKWYKGNRELSKRDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        86 ~p~i~W~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      .|.+.|++++..+....... ....+  .|.+.+.+..|.|.|+|.+.+..|....+..|.|.+...
T Consensus       449 ~p~i~wl~dg~~v~~~d~~~s~~~~~--~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~~~~~  513 (1281)
T KOG4222|consen  449 TPNISWLKDGCNVMNPDSRISQQEIG--SLRIRDLKGPDTGRYTCIASDESGESTWSATLTVEKAGS  513 (1281)
T ss_pred             CCCchhhhcccccccCCcccceeeec--eeeeeeeecCCCcceeeeccCcccccccceeeEhhhcCc
Confidence            99999999998776533211 22223  699999999999999999999999999999999866543

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.80  E-value=1e-07  Score=59.25  Aligned_cols=78  Identities=22%  Similarity=0.316  Sum_probs=54.7

Q ss_pred             cCCcEEEEEEEeccC------CCeeEEEeCCEE-------C-C-----------CCCeEEEe-cCCEEEEEEccCCCCCC
Q psy12421         71 VRQTCKLLCCLSGKP------PPTVKWYKGNRE-------L-S-----------KRDYSMSY-SDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p------~p~i~W~~~~~~-------~-~-----------~~~~~~~~-~~~~~~l~i~~~~~~d~  124 (168)
                      .|++++|.|.....|      ...+.|+|....       + .           ..+..... ..+..+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            488999999987653      456999986410       0 0           01111111 12345799999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEee
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEEE
Confidence            999999999888888888887753

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.79  E-value=7.6e-08  Score=59.86  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=52.3

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccC-CCeeEEEeCCE--E---CC----------CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGNR--E---LS----------KRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~--~---~~----------~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      ...+....+.+|++++|.|.+.+.. ...+.||+...  .   +.          ..++..........|.|.+++.+|+
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Ds   83 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGSGTDFTLTISRVEPEDA   83 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEeccCCEEEEEECCCChHHC
Confidence            3455667889999999999987655 67899997531  1   00          1123332333445799999999999


Q ss_pred             eEEEEEEEeC
Q psy12421        125 GEYKCVATNK  134 (168)
Q Consensus       125 G~Y~C~a~n~  134 (168)
                      |.|.|.+.+.
T Consensus        84 g~Y~Ca~~~~   93 (106)
T cd04980          84 AVYYCQQYGT   93 (106)
T ss_pred             EEEEEEEeCC
Confidence            9999998654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.72  E-value=2.7e-07  Score=60.24  Aligned_cols=114  Identities=16%  Similarity=0.235  Sum_probs=67.7

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CC-CeeEEEeC
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PP-PTVKWYKG   94 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i~W~~~   94 (168)
                      |.+.+++..|+|.  |.|..   ..............+..+|.+...+.......|+.+.|.|.+.|. |. +.+.|+++
T Consensus         3 L~i~~v~~~D~G~--Y~C~~---~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~   77 (139)
T cd05771           3 LTLPGLTVHDEGT--YICSV---STPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE   77 (139)
T ss_pred             EEECCCCHHHCEE--EEEEE---EccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence            4566788888666  53333   222222222233345578888776666555578899999999985 43 48999999


Q ss_pred             CEECCC-----CCe----EEEecCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         95 NRELSK-----RDY----SMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        95 ~~~~~~-----~~~----~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +.....     ...    .....++    .+.|.+......+...|.|.+.+..
T Consensus        78 g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~~~g~~ytC~V~H~~  131 (139)
T cd05771          78 PPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTEDAGATYTCRVSHVS  131 (139)
T ss_pred             CCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCccCCCCEEEEEEEcCC
Confidence            753211     110    1111222    1245555555556779999997754

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.72  E-value=1.5e-07  Score=58.28  Aligned_cols=69  Identities=25%  Similarity=0.460  Sum_probs=50.0

Q ss_pred             EEecCCcEEEEEEEecc-CCCeeEEEeCCEE-----C-------------CCCCeEEEecC--CEEEEEEccCCCCCCeE
Q psy12421         68 VMQVRQTCKLLCCLSGK-PPPTVKWYKGNRE-----L-------------SKRDYSMSYSD--GVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~-----~-------------~~~~~~~~~~~--~~~~l~i~~~~~~d~G~  126 (168)
                      .+.+|++++|.|.+... +...+.|++....     +             ...++.+....  +..+|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G~   81 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSAV   81 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCEE
Confidence            46689999999999876 6778999985321     0             01122222222  55689999999999999


Q ss_pred             EEEEEEeCCc
Q psy12421        127 YKCVATNKHG  136 (168)
Q Consensus       127 Y~C~a~n~~g  136 (168)
                      |.|.+.+..+
T Consensus        82 Y~C~v~~~~~   91 (105)
T cd00099          82 YYCAVSLSGG   91 (105)
T ss_pred             EEEEEecCCC
Confidence            9999987765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.70  E-value=7.1e-07  Score=52.57  Aligned_cols=74  Identities=23%  Similarity=0.391  Sum_probs=50.5

Q ss_pred             EEEEEEEec-cCCCeeEEEeCCEECCCCCeEE-EecC---CEEEEEEccCCCCCCeEEEEEEEeCCcc-eEEEEEEEEee
Q psy12421         75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSM-SYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVVIVES  148 (168)
Q Consensus        75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~-~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~  148 (168)
                      +.|.|.+.| .|.+.|.||+++..+....... ....   ..++|.+..-...|...|+|.|.|..-. ......|.|.+
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y   81 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEVQY   81 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence            679999876 8999999999999886532111 1111   1345777666677778899999997532 44455666654

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.69  E-value=5.4e-07  Score=55.35  Aligned_cols=75  Identities=21%  Similarity=0.396  Sum_probs=49.0

Q ss_pred             CCcEEEEEEEeccC---CCeeEEEeCCE-----------ECCC-------CCeEEE---ecCCEEEEEEccCCCCCCeEE
Q psy12421         72 RQTCKLLCCLSGKP---PPTVKWYKGNR-----------ELSK-------RDYSMS---YSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        72 g~~~~l~C~~~g~p---~p~i~W~~~~~-----------~~~~-------~~~~~~---~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      |+++.|.|......   ...+.|++...           ....       .+....   ...+..+|.|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            67888999875322   23577877542           1110       111111   112345799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEE
Q psy12421        128 KCVATNKHGTDETNCVVIV  146 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l~v  146 (168)
                      .|.+.|..+.....+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            9999998777777777765

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.68  E-value=1.8e-07  Score=59.06  Aligned_cols=71  Identities=18%  Similarity=0.367  Sum_probs=51.2

Q ss_pred             ecCCeEEecCCcEEEEEEEec--cCCCeeEEEeCC--EEC------------------CCCCeEEEecC--CEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSG--KPPPTVKWYKGN--REL------------------SKRDYSMSYSD--GVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g--~p~p~i~W~~~~--~~~------------------~~~~~~~~~~~--~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|...+  .+.+.+.||+..  ..+                  ...++......  ....|.|.+
T Consensus         4 ~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   83 (116)
T cd04982           4 PQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQN   83 (116)
T ss_pred             cCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEEE
Confidence            344567888999999999887  678899999852  111                  01233333333  456899999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|+|.|.|.+..
T Consensus        84 ~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          84 LEKEDSATYYCAYWE   98 (116)
T ss_pred             CCHHHCEEEEEEEec
Confidence            999999999998764

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.66  E-value=6.6e-07  Score=54.68  Aligned_cols=74  Identities=19%  Similarity=0.356  Sum_probs=49.8

Q ss_pred             CcEEEEEEEeccC---CCeeEEEeCCEE----C-----------CC-CCeEEEecC---CEEEEEEccCCCCCCeEEEEE
Q psy12421         73 QTCKLLCCLSGKP---PPTVKWYKGNRE----L-----------SK-RDYSMSYSD---GVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        73 ~~~~l~C~~~g~p---~p~i~W~~~~~~----~-----------~~-~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +++.|.|.....+   ...+.|+|....    +           .. -..+.....   +..+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            4689999987654   447899986421    0           00 011111111   345899999999999999999


Q ss_pred             EEe-CCcceEEEEEEEE
Q psy12421        131 ATN-KHGTDETNCVVIV  146 (168)
Q Consensus       131 a~n-~~g~~~~~~~l~v  146 (168)
                      +.+ ..|.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            875 5678887777776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.65  E-value=6.6e-07  Score=56.49  Aligned_cols=72  Identities=17%  Similarity=0.179  Sum_probs=48.1

Q ss_pred             CCeEEecCCcEEEEEEEecc----CCCeeEEEe---------------CCEECC-C-C----CeEEE--ecCCEEEEEEc
Q psy12421         65 RPRVMQVRQTCKLLCCLSGK----PPPTVKWYK---------------GNRELS-K-R----DYSMS--YSDGVVSMEII  117 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~----p~p~i~W~~---------------~~~~~~-~-~----~~~~~--~~~~~~~l~i~  117 (168)
                      ....+..|+.+.|.|.....    +...+.|..               ++.... . .    +....  ...+..++.|.
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I~   85 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVIH   85 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEEc
Confidence            34567789999999998653    345899932               333221 0 1    11111  11234479999


Q ss_pred             cCCCCCCeEEEEEEEeCCc
Q psy12421        118 DCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~~g  136 (168)
                      +++.+|.|.|+|.+.|.-+
T Consensus        86 nv~~sD~G~Y~C~v~n~p~  104 (116)
T cd05879          86 NLDYTDNGTFTCDVKNPPD  104 (116)
T ss_pred             cCCcccCEEEEEEEEcCCC
Confidence            9999999999999999754

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.63  E-value=1e-06  Score=55.18  Aligned_cols=78  Identities=24%  Similarity=0.442  Sum_probs=53.7

Q ss_pred             cCCcEEEEEEEeccC----------CCeeEEEeCC--EEC-----------CC----CCeEEE---ecCCEEEEEEccCC
Q psy12421         71 VRQTCKLLCCLSGKP----------PPTVKWYKGN--REL-----------SK----RDYSMS---YSDGVVSMEIIDCK  120 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p----------~p~i~W~~~~--~~~-----------~~----~~~~~~---~~~~~~~l~i~~~~  120 (168)
                      .|++++|.|.....+          ...+.|+|..  ...           ..    .+..+.   ...+..+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            488999999987644          3678999852  110           00    111111   12344579999999


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        121 PEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      .+|+|.|.|.+............|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            9999999999998766677777777754

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.60  E-value=7.6e-07  Score=54.49  Aligned_cols=78  Identities=17%  Similarity=0.319  Sum_probs=52.4

Q ss_pred             EeecCCeEEecCCcEEEEEEEec-cCCCe--eEEEeCCEECCCCCeEEE---ecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSG-KPPPT--VKWYKGNRELSKRDYSMS---YSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g-~p~p~--i~W~~~~~~~~~~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+.+....+.+|+.+.|.|.+.| .|.+.  +.||+++..+....+...   ......+|.+......|...|+|.|.+.
T Consensus         5 ~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~~~r~D~g~~~sC~A~l~   84 (100)
T cd05755           5 ELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITITVDREDHGANFSCETELD   84 (100)
T ss_pred             EEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEecchhhCCcEEEEEEEec
Confidence            34555556789999999999986 77776  699999998865332210   0112335666544445555899999987


Q ss_pred             Ccce
Q psy12421        135 HGTD  138 (168)
Q Consensus       135 ~g~~  138 (168)
                      .+..
T Consensus        85 l~~~   88 (100)
T cd05755          85 LRPE   88 (100)
T ss_pred             cCcc
Confidence            7553

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.57  E-value=6.8e-07  Score=53.92  Aligned_cols=71  Identities=20%  Similarity=0.340  Sum_probs=48.2

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCC---------------C---CeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSK---------------R---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~---------------~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      |++++|.|.........+.|++.......               .   .......+  .+|.|.+++.+|+|.|.|.+..
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~--~sL~I~~l~~~DsG~Y~c~v~~   78 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN--GSLLIQNLTKEDSGTYTLQIIS   78 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC--ceEEEccCCchhcEEEEEEEEc
Confidence            68899999887766778999986532110               0   01111122  3799999999999999999998


Q ss_pred             CCcc-eEEEEEE
Q psy12421        134 KHGT-DETNCVV  144 (168)
Q Consensus       134 ~~g~-~~~~~~l  144 (168)
                      ..|. ....+.|
T Consensus        79 ~~~~~~~~~~~l   90 (92)
T cd05741          79 TNGVTENAKFFL   90 (92)
T ss_pred             CCCcEEEEEEEE
Confidence            7644 3334444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.53  E-value=7.7e-07  Score=54.50  Aligned_cols=67  Identities=22%  Similarity=0.365  Sum_probs=48.0

Q ss_pred             EEecCCcEEEEEEEecc--CCCeeEEEeCCE--ECC-------------CCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         68 VMQVRQTCKLLCCLSGK--PPPTVKWYKGNR--ELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~--p~p~i~W~~~~~--~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      .+.+|+++.|.|...+.  ....+.||+...  .+.             ..++..........|.|.+++.+|+|.|.|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   81 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSGNTASLTISGAQTEDEADYYCQ   81 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccCCEEEEEECCCChhhCEEEEEE
Confidence            46689999999998765  566799998532  110             1233333344556799999999999999998


Q ss_pred             EEeC
Q psy12421        131 ATNK  134 (168)
Q Consensus       131 a~n~  134 (168)
                      +.+.
T Consensus        82 ~~~~   85 (98)
T cd04984          82 VWDS   85 (98)
T ss_pred             EccC
Confidence            8753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.50  E-value=2.8e-06  Score=53.61  Aligned_cols=73  Identities=19%  Similarity=0.352  Sum_probs=48.1

Q ss_pred             cCCeEEecCCcEEEEEEEeccC----CCeeEEEeC----CEE--C----------CCCCe--EE--E--ecCCEEEEEEc
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP----PPTVKWYKG----NRE--L----------SKRDY--SM--S--YSDGVVSMEII  117 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~----~~~--~----------~~~~~--~~--~--~~~~~~~l~i~  117 (168)
                      +....+.+|+++.|.|.....+    ...+.|++.    +..  +          ....+  +.  .  ...+..+|.|.
T Consensus         5 ~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I~   84 (115)
T cd05880           5 SKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILIW   84 (115)
T ss_pred             CceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEEe
Confidence            4456788999999999976533    246999752    111  1          00111  11  0  11234579999


Q ss_pred             cCCCCCCeEEEEEEEeCCc
Q psy12421        118 DCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~~g  136 (168)
                      +++.+|+|.|.|.+.|..+
T Consensus        85 ~v~~~D~G~Y~C~v~~~~~  103 (115)
T cd05880          85 QLQPTDNGTYTCQVKNPPD  103 (115)
T ss_pred             eCChhhCEEEEEEEEeCCC
Confidence            9999999999999998754

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.49  E-value=9.4e-07  Score=54.05  Aligned_cols=76  Identities=17%  Similarity=0.320  Sum_probs=51.5

Q ss_pred             cCCcEEEEEEEec-cCCCeeEEEeCCEECC--------------CCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         71 VRQTCKLLCCLSG-KPPPTVKWYKGNRELS--------------KRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~--------------~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      +|++++|.|.... .....+.|++....+.              ...+  +........+|.|.+++.+|+|.|.|.+.+
T Consensus         3 ~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~~   82 (97)
T cd05775           3 LGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEINT   82 (97)
T ss_pred             cCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEEc
Confidence            6899999998754 5566889998643211              0111  122223335799999999999999999998


Q ss_pred             CCcce-EEEEEEEE
Q psy12421        134 KHGTD-ETNCVVIV  146 (168)
Q Consensus       134 ~~g~~-~~~~~l~v  146 (168)
                      ..|.. ...+.|.|
T Consensus        83 ~~~~~~~~~f~L~v   96 (97)
T cd05775          83 KNGVTITKEFTLHI   96 (97)
T ss_pred             CCCCeEEEEEEEEe
Confidence            87654 44555554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.47  E-value=5e-06  Score=52.52  Aligned_cols=73  Identities=19%  Similarity=0.261  Sum_probs=47.7

Q ss_pred             cCCeEEecCCcEEEEEEEeccC----CCeeEEEeCCE------EC-----------CCCCeE----EE--ecCCEEEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP----PPTVKWYKGNR------EL-----------SKRDYS----MS--YSDGVVSMEI  116 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~~~------~~-----------~~~~~~----~~--~~~~~~~l~i  116 (168)
                      +....+.+|+.+.|.|......    ...+.|++...      .+           ...++.    +.  ...+..+|.|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4456778999999999886532    25689986321      00           011111    11  0122357999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc
Q psy12421        117 IDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      .+++.+|+|.|.|.+.|.-.
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~  104 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPD  104 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCC
Confidence            99999999999999998744

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.45  E-value=3.8e-06  Score=52.30  Aligned_cols=84  Identities=20%  Similarity=0.361  Sum_probs=55.9

Q ss_pred             eecCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCCE-----ECC---------------CCCeEEEec--CCEEEEEEcc
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNR-----ELS---------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~-----~~~---------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ..+....+.+|+++.|.|... ......+.|++...     .+.               ..+..+...  ....+|.|.+
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            345567888999999999998 55677899998322     110               011122222  3356799999


Q ss_pred             CCCCCCeEEEEEEEeC-CcceEEEEEEE
Q psy12421        119 CKPEDSGEYKCVATNK-HGTDETNCVVI  145 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~-~g~~~~~~~l~  145 (168)
                      ++.+|+|.|.|.+... .........|.
T Consensus        86 l~~~DsG~Y~C~v~~~~~~~~~~~~~L~  113 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTSNEQSFGNGTKLT  113 (114)
T ss_dssp             ESGGGEEEEEEEEEESSEEEEEEEEEEE
T ss_pred             CCcCcCEEEEEEEEECCCCEECCcEEEE
Confidence            9999999999999887 22233344444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.43  E-value=2.4e-06  Score=52.22  Aligned_cols=75  Identities=25%  Similarity=0.390  Sum_probs=48.7

Q ss_pred             CCcEEEEEEEeccCC-CeeEEEeCCE----EC----C------C----CCeEE-EecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPP-PTVKWYKGNR----EL----S------K----RDYSM-SYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        72 g~~~~l~C~~~g~p~-p~i~W~~~~~----~~----~------~----~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      |++++|.|....... -.+.|+|...    .+    .      .    .+... ....+..+|.|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            678999998654332 3689988531    10    0      0    01111 11123457999999999999999987


Q ss_pred             Ee-CCcceEEEEEEEE
Q psy12421        132 TN-KHGTDETNCVVIV  146 (168)
Q Consensus       132 ~n-~~g~~~~~~~l~v  146 (168)
                      .+ +.|..+....|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            75 4677777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.43  E-value=1.1e-05  Score=50.81  Aligned_cols=39  Identities=21%  Similarity=0.415  Sum_probs=33.8

Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       110 ~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      +..+|.|.+++.+|+|.|.|.+.+.....+....|.|..
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            445899999999999999999999988888888888753

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.42  E-value=3.1e-06  Score=53.44  Aligned_cols=73  Identities=25%  Similarity=0.352  Sum_probs=51.3

Q ss_pred             eecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCE--EC-------------CCCCeEEE--ecCCEEEEEEccCCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNR--EL-------------SKRDYSMS--YSDGVVSMEIIDCKPED  123 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~--~~-------------~~~~~~~~--~~~~~~~l~i~~~~~~d  123 (168)
                      ..+....+..|+++.|.|..... ....+.||+...  .+             ...++.+.  ...+..+|.|.+++.+|
T Consensus         4 q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~D   83 (116)
T cd07706           4 QAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLED   83 (116)
T ss_pred             EeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHHH
Confidence            45556788899999999997753 456799998421  10             01233332  12345679999999999


Q ss_pred             CeEEEEEEEeC
Q psy12421        124 SGEYKCVATNK  134 (168)
Q Consensus       124 ~G~Y~C~a~n~  134 (168)
                      +|.|.|.+...
T Consensus        84 sg~Y~C~~~~~   94 (116)
T cd07706          84 SAKYFCALSTL   94 (116)
T ss_pred             CEEEEEEEECC
Confidence            99999988753

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.42  E-value=8.5e-06  Score=48.33  Aligned_cols=63  Identities=30%  Similarity=0.498  Sum_probs=43.1

Q ss_pred             EEEEEEEec-cCCCeeEEEeCCEECCCCCeEEEec-C-CE----EEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYS-D-GV----VSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~-~-~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      +.|.|.+.| .|.+.+.|++++..+.......... + +.    +.|.+......+...|+|.+.+....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~   71 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLH   71 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccC
Confidence            679999987 6999999999999876532222211 2 11    23555455566778999999987543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.42  E-value=7e-06  Score=48.56  Aligned_cols=63  Identities=24%  Similarity=0.453  Sum_probs=41.6

Q ss_pred             EEEEEEEec-cCCCeeEEEeCCEECCCCCeEEEe-cCC----EEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSY-SDG----VVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~-~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      +.|.|.+.+ .|.+.+.|++++..+......... .++    .+.|.+......+.+.|+|.+.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            679999976 588999999999988643211111 122    123444444555678999999987543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.40  E-value=7.9e-06  Score=50.22  Aligned_cols=73  Identities=19%  Similarity=0.301  Sum_probs=47.5

Q ss_pred             cEEEEEEEeccC---CCeeEEEeCCEE-----C---C--------C---CCeEEEe--cCCEEEEEEccCCCCCCeEEEE
Q psy12421         74 TCKLLCCLSGKP---PPTVKWYKGNRE-----L---S--------K---RDYSMSY--SDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        74 ~~~l~C~~~g~p---~p~i~W~~~~~~-----~---~--------~---~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      ++.|.|.....+   ...+.|+|....     +   .        .   .+.....  ..+..+|.|.+++.+|+|.|.|
T Consensus         2 ~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~C   81 (100)
T cd05888           2 DTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYKC   81 (100)
T ss_pred             CEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEEE
Confidence            578899876443   347889884211     0   0        0   1111211  1224479999999999999999


Q ss_pred             EEEe-CCcceEEEEEEEE
Q psy12421        130 VATN-KHGTDETNCVVIV  146 (168)
Q Consensus       130 ~a~n-~~g~~~~~~~l~v  146 (168)
                      .+.+ +.|..+....|.|
T Consensus        82 ~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          82 RVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEeCCCCCeeeEEEEEe
Confidence            9998 5777777777765

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.37  E-value=5e-06  Score=50.53  Aligned_cols=73  Identities=16%  Similarity=0.211  Sum_probs=48.8

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe-EEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      |.+.. .....+..|++++|.|.... ..-.+.|+|++........ ..........|.|..++..|+|.|.|...
T Consensus         2 P~l~a-~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711           2 PFLSA-HPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CEEEe-cCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCceecccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            44443 33567889999999998755 5567899998864322100 00001112368999999999999999865

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.36  E-value=1.2e-05  Score=50.22  Aligned_cols=77  Identities=19%  Similarity=0.327  Sum_probs=51.7

Q ss_pred             CCcEEEEEEEeccC-------CCeeEEEeCC-----EEC----C-C----------CCeEEEe---cCCEEEEEEccCCC
Q psy12421         72 RQTCKLLCCLSGKP-------PPTVKWYKGN-----REL----S-K----------RDYSMSY---SDGVVSMEIIDCKP  121 (168)
Q Consensus        72 g~~~~l~C~~~g~p-------~p~i~W~~~~-----~~~----~-~----------~~~~~~~---~~~~~~l~i~~~~~  121 (168)
                      |..+.|.|...-.|       .+.+.|.+..     ...    . .          .+..+..   ..+..+|.|.+++.
T Consensus         2 ~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~~   81 (110)
T cd05902           2 SSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLRY   81 (110)
T ss_pred             CCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCCH
Confidence            67899999965332       4788998751     110    0 0          1111111   12456899999999


Q ss_pred             CCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        122 EDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      +|+|.|.|.+..........+.|.|..
T Consensus        82 ~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          82 SDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             HHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            999999999999776677777887753

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.36  E-value=4.2e-06  Score=50.71  Aligned_cols=68  Identities=25%  Similarity=0.430  Sum_probs=46.8

Q ss_pred             ecCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCCe---EEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         70 QVRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRDY---SMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        70 ~~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~---~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      ..|+.+.|.|.+.|. | .+.+.|++++..+.....   .....++    .+.|.+......+.+.|+|.+.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            358899999999996 5 468999999988765321   1112222    123555555556999999999987543

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.30  E-value=1.8e-05  Score=48.56  Aligned_cols=35  Identities=23%  Similarity=0.372  Sum_probs=30.7

Q ss_pred             EEEEEccCCCCCCeEEEEEEEe-CCcceEEEEEEEE
Q psy12421        112 VSMEIIDCKPEDSGEYKCVATN-KHGTDETNCVVIV  146 (168)
Q Consensus       112 ~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  146 (168)
                      .+|.|.+++.+|.|.|.|.+.| +.|+.+....|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            3799999999999999999999 6788787887776

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.30  E-value=1.3e-05  Score=53.93  Aligned_cols=84  Identities=15%  Similarity=0.276  Sum_probs=58.4

Q ss_pred             CeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECC----------C---CCeE-EEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELS----------K---RDYS-MSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~----------~---~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ...+.+|+++.|.|... +...+.+.|+|....+.          +   .+.. .........|.|.++..+|+|.|.|.
T Consensus        24 ~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY~C~  103 (189)
T PHA02987         24 KITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCYTCI  103 (189)
T ss_pred             EEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEEEEE
Confidence            35678999999999974 66788899998643221          0   1111 11122334799999999999999998


Q ss_pred             EEeC-Cc-ceEEEEEEEEeeC
Q psy12421        131 ATNK-HG-TDETNCVVIVESE  149 (168)
Q Consensus       131 a~n~-~g-~~~~~~~l~v~~~  149 (168)
                      ...- .| ..+....|.|...
T Consensus       104 F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        104 FNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEecCCCCCceeEEEEEEEch
Confidence            7754 56 6677777777643

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.29  E-value=2.4e-05  Score=46.29  Aligned_cols=76  Identities=13%  Similarity=0.234  Sum_probs=50.2

Q ss_pred             CeEEecCCcEEEEEEEeccC--CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKP--PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      +..+..|++++|.|.....+  .+.+.|..-+....    . ....+..+|.+..+...|+|.++|.+....-.....+.
T Consensus         8 ~~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~----~-~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~~   82 (88)
T cd07694           8 SDHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSK----Q-ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKLD   82 (88)
T ss_pred             CCeeecCCcEEEEEecCCCCCCCccEEEeCCCCccc----e-eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEee
Confidence            34677899999999985534  45999986443211    1 11122237999999999999999999755333344444


Q ss_pred             EEE
Q psy12421        144 VIV  146 (168)
Q Consensus       144 l~v  146 (168)
                      +.|
T Consensus        83 V~V   85 (88)
T cd07694          83 IKV   85 (88)
T ss_pred             EEE
Confidence            444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.29  E-value=7.2e-06  Score=51.04  Aligned_cols=66  Identities=27%  Similarity=0.524  Sum_probs=44.9

Q ss_pred             EEecCCcEEEEEEEecc-CCCeeEEEeCCEE-----C------C------------CCCeEEE--ecCCEEEEEEccCCC
Q psy12421         68 VMQVRQTCKLLCCLSGK-PPPTVKWYKGNRE-----L------S------------KRDYSMS--YSDGVVSMEIIDCKP  121 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~-----~------~------------~~~~~~~--~~~~~~~l~i~~~~~  121 (168)
                      .+..|++++|.|...+. ....+.||+...-     +      .            ..++...  .......|.|.+++.
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~~   81 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVKP   81 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCCH
Confidence            46789999999998763 3457999985321     0      0            1122221  123345699999999


Q ss_pred             CCCeEEEEEEEe
Q psy12421        122 EDSGEYKCVATN  133 (168)
Q Consensus       122 ~d~G~Y~C~a~n  133 (168)
                      +|+|.|.|...+
T Consensus        82 ~Dsg~YyCa~~~   93 (107)
T cd07700          82 EDSGTYFCMTVG   93 (107)
T ss_pred             HHCEEEEEeEcC
Confidence            999999998753

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd00096 Ig Immunoglobulin domain

Probab=98.28  E-value=1e-05  Score=45.03  Aligned_cols=61  Identities=39%  Similarity=0.708  Sum_probs=44.6

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCCe-----EEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRDY-----SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-----~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +.|.|.+.+.+.+.+.|++++........     ..........|.+.+++..|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            36889998878889999998876543221     11112234468999999999999999998775

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.27  E-value=1.8e-05  Score=46.96  Aligned_cols=61  Identities=20%  Similarity=0.467  Sum_probs=41.4

Q ss_pred             EEEEEEEec-cCCCeeEEEeCCEECCCCCeEEE-e-cCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         75 CKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMS-Y-SDG----VVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        75 ~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~-~-~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +.|.|.+.| .|.+.+.|+++|..+........ . .++    .+.|.+..-...+...|+|.+.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            679999987 88889999999998754321111 1 111    2245555555666788999998864

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.25  E-value=1.5e-05  Score=48.72  Aligned_cols=67  Identities=16%  Similarity=0.264  Sum_probs=47.2

Q ss_pred             EEecCCcEEEEEEEec-cCCCeeEEEeCCEEC--------------CCCCeEEE--ecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         68 VMQVRQTCKLLCCLSG-KPPPTVKWYKGNREL--------------SKRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~--------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      .+.+|++++|.|.... .....+.|++.....              ...++.+.  ...+...|.|.+++.+|+|.|.|.
T Consensus         3 ~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   82 (98)
T cd05716           3 TGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWCG   82 (98)
T ss_pred             EEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEEE
Confidence            5678999999998765 456778999864211              01223322  123556799999999999999998


Q ss_pred             EEeC
Q psy12421        131 ATNK  134 (168)
Q Consensus       131 a~n~  134 (168)
                      +...
T Consensus        83 ~~~~   86 (98)
T cd05716          83 VGDD   86 (98)
T ss_pred             cccC
Confidence            7764

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.24  E-value=2.5e-05  Score=49.56  Aligned_cols=72  Identities=22%  Similarity=0.316  Sum_probs=48.1

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC------CCeeEEEeCCEE-----C----C---------CCCeEEE--ecCCEEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP------PPTVKWYKGNRE-----L----S---------KRDYSMS--YSDGVVSMEI  116 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p------~p~i~W~~~~~~-----~----~---------~~~~~~~--~~~~~~~l~i  116 (168)
                      .++...+.+|++++|.|......      ...+.||+...-     +    .         ..++...  ...+.++|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            34456788999999999865321      346899985321     0    0         0122221  1344568999


Q ss_pred             ccCCCCCCeEEEEEEEeC
Q psy12421        117 IDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999988654

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.19  E-value=1.1e-05  Score=50.00  Aligned_cols=66  Identities=20%  Similarity=0.338  Sum_probs=45.2

Q ss_pred             EEecCCcEEEEEEEeccCCCeeEEEeCCEE----C------CC-------------CCeEEEecCCEEEEEEccCCCCCC
Q psy12421         68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRE----L------SK-------------RDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~----~------~~-------------~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      .+.+|++++|.|.........+.||+....    +      ..             .++..........|.|.+++.+|+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~sDs   81 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSSNSFVLTLKNFQKENE   81 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            356899999999986655667999985421    1      00             112221223455799999999999


Q ss_pred             eEEEEEEEe
Q psy12421        125 GEYKCVATN  133 (168)
Q Consensus       125 G~Y~C~a~n  133 (168)
                      |.|.|.+.+
T Consensus        82 gtY~Ca~~~   90 (104)
T cd05720          82 GYYFCSVAS   90 (104)
T ss_pred             EEEEEEEcc
Confidence            999998653

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.17  E-value=3.1e-05  Score=47.13  Aligned_cols=35  Identities=23%  Similarity=0.383  Sum_probs=30.5

Q ss_pred             EEEEEccCCCCCCeEEEEEEEe-CCcceEEEEEEEE
Q psy12421        112 VSMEIIDCKPEDSGEYKCVATN-KHGTDETNCVVIV  146 (168)
Q Consensus       112 ~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  146 (168)
                      .+|.|.+++.+|.|.|.|.+.+ +.|+.+.+..|.|
T Consensus        60 ~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          60 ATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             cEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            3799999999999999999765 5889898888876

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.08  E-value=0.0001  Score=44.62  Aligned_cols=76  Identities=18%  Similarity=0.371  Sum_probs=44.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEEeCCEECCCCC---eEEEecCCE-EEEEEccCCCCCCeEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWYKGNRELSKRD---YSMSYSDGV-VSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~---~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +|.+........   ++.+.|.|.+.|. |.. .+.|++++..+....   ......++. .......+...+...|+|.
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~   78 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCR   78 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEE
Confidence            455544433322   6789999999995 443 889999986432211   111122221 1222333444578999999


Q ss_pred             EEeCC
Q psy12421        131 ATNKH  135 (168)
Q Consensus       131 a~n~~  135 (168)
                      +.+..
T Consensus        79 V~H~~   83 (93)
T cd07698          79 VEHSG   83 (93)
T ss_pred             EEeCC
Confidence            98764

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.04  E-value=7.3e-05  Score=44.73  Aligned_cols=66  Identities=21%  Similarity=0.468  Sum_probs=42.0

Q ss_pred             CCcEEEEEEEe-ccCCCeeEEEeCCEECCCCC--eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         72 RQTCKLLCCLS-GKPPPTVKWYKGNRELSKRD--YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        72 g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~--~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      |+.+.+.|.+. +.|.|.+.|+.++..+....  .......+    .+.|.+..-...+...++|.|.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            67999999765 69999999999987662111  11111111    224666554455678889999987544

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.00  E-value=7.7e-05  Score=47.18  Aligned_cols=71  Identities=23%  Similarity=0.402  Sum_probs=48.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCCE--E---C----C-----------CCCeEEEecC--CEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGNR--E---L----S-----------KRDYSMSYSD--GVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~~--~---~----~-----------~~~~~~~~~~--~~~~l~i~~  118 (168)
                      .+....+.+|++++|.|...+..  ...+.||+...  .   +    .           ..++......  ....|.|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            34567788999999999876533  56689998532  1   1    0           1122222222  334699999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      +..+|+|.|.|.+..
T Consensus        83 ~~~~Dsa~YyCa~~~   97 (117)
T cd04981          83 LTPEDTAVYYCARGL   97 (117)
T ss_pred             CCHHHCEEEEEEEEc
Confidence            999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>PHA03376 BARF1; Provisional

Probab=97.94  E-value=0.00014  Score=49.09  Aligned_cols=72  Identities=14%  Similarity=0.179  Sum_probs=49.7

Q ss_pred             CeEEecCCcEEEEEEEe---ccCCCeeEEEeCCE----EC-------------CC-CCeEEEecCCEEEEEEccCCCCCC
Q psy12421         66 PRVMQVRQTCKLLCCLS---GKPPPTVKWYKGNR----EL-------------SK-RDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~---g~p~p~i~W~~~~~----~~-------------~~-~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      .....+|+.+.|+|...   .-+.-.+.|+|.+.    -+             .. ....+....++.+|.|.++..+|.
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~gnvsLvI~~l~lSDd   99 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   99 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecCCeEEEEEEeeeecCC
Confidence            35667899999999864   22455789999532    11             00 112233345777899999999999


Q ss_pred             eEEEEEEEeCCcc
Q psy12421        125 GEYKCVATNKHGT  137 (168)
Q Consensus       125 G~Y~C~a~n~~g~  137 (168)
                      |.|.|........
T Consensus       100 GtY~C~fQkge~~  112 (221)
T PHA03376        100 GNYLCRMKLGETE  112 (221)
T ss_pred             ceEEEEEEcCCCc
Confidence            9999999876543

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.85  E-value=0.00028  Score=42.99  Aligned_cols=33  Identities=27%  Similarity=0.376  Sum_probs=26.6

Q ss_pred             EEEEEccCCCCCCeEEEEEEEeC-CcceEEEEEE
Q psy12421        112 VSMEIIDCKPEDSGEYKCVATNK-HGTDETNCVV  144 (168)
Q Consensus       112 ~~l~i~~~~~~d~G~Y~C~a~n~-~g~~~~~~~l  144 (168)
                      .+|.|.+++.+|.|.|.|.+.+. .|..+..+.+
T Consensus        60 ~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          60 MSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             cEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            37899999999999999988764 6776665544

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>smart00406 IGv Immunoglobulin V-Type

Probab=97.80  E-value=0.0002  Score=41.60  Aligned_cols=57  Identities=30%  Similarity=0.472  Sum_probs=36.7

Q ss_pred             cEEEEEEEeccCCC--eeEEEeCCE--E---C---C-----------CCCeEEEec--CCEEEEEEccCCCCCCeEEEEE
Q psy12421         74 TCKLLCCLSGKPPP--TVKWYKGNR--E---L---S-----------KRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        74 ~~~l~C~~~g~p~p--~i~W~~~~~--~---~---~-----------~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ++.|.|.......+  .+.|++...  .   +   .           ..++.....  .+..+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            36788987765543  788987532  0   0   0           112222222  4456799999999999999995

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.75  E-value=0.0015  Score=40.84  Aligned_cols=67  Identities=22%  Similarity=0.420  Sum_probs=41.3

Q ss_pred             EEecCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCCeEEE-ecCC-----EEEEEEccCCCCCCe-EEEEEEEeCC
Q psy12421         68 VMQVRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRDYSMS-YSDG-----VVSMEIIDCKPEDSG-EYKCVATNKH  135 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~~~~~-~~~~-----~~~l~i~~~~~~d~G-~Y~C~a~n~~  135 (168)
                      ....|+.++|.|.+.| .|. ..+.|++||..+........ ..++     .+.|.+.. ...|.| .|+|.+....
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~   92 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRT   92 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCC
Confidence            3446788999999998 553 58899999998754221111 1221     12344443 334433 5999998764

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.72  E-value=0.00026  Score=43.02  Aligned_cols=71  Identities=15%  Similarity=0.275  Sum_probs=42.4

Q ss_pred             CcEEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         73 QTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        73 ~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ..+.+.|.+. |+|.+.|.|+++....... ......++    .+.|.+......|...|+|.+.+..-.....+.+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~-~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANT-TSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeE-EEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            4678999876 7999999999872111110 11111122    2245655555566778999999986444444433

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.67  E-value=0.0014  Score=37.94  Aligned_cols=61  Identities=28%  Similarity=0.514  Sum_probs=38.2

Q ss_pred             EEEEEEEecc-CC-CeeEEEeCCEECCCCCe--EE-EecCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         75 CKLLCCLSGK-PP-PTVKWYKGNRELSKRDY--SM-SYSDG----VVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        75 ~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~--~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +.|.|.+.|. |. ..+.|+++|..+.....  .. ...++    .+.|.+......+...|+|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6799999985 44 58999999986432210  01 11222    2235555555667789999987653

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.67  E-value=0.00043  Score=42.50  Aligned_cols=67  Identities=18%  Similarity=0.312  Sum_probs=41.3

Q ss_pred             EecCCcEEEEEEEec-cC-CCeeEEEeCCEECCCCC---eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         69 MQVRQTCKLLCCLSG-KP-PPTVKWYKGNRELSKRD---YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g-~p-~p~i~W~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ...++.+.|.|.+.| .| ...+.|+++|..+....   ......++.    +.|.+..-...+...|+|.+....
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            335677999999998 55 45789999999875321   011122331    124444333345678999988654

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.61  E-value=0.00014  Score=47.30  Aligned_cols=42  Identities=14%  Similarity=0.217  Sum_probs=36.5

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchh
Q psy12421        113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus       113 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      +|.|.+++..|+|.|.|.+.+..|.......|.|..+|....
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~   43 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRL   43 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEE
Confidence            689999999999999999999888888888999987765533

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.56  E-value=0.00076  Score=41.00  Aligned_cols=66  Identities=18%  Similarity=0.388  Sum_probs=40.0

Q ss_pred             CCcEEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         72 RQTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        72 g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      .....+.|.+. |+|.+.|.|+++...... .......++    .+.|.+......+...|+|.+.+..-..
T Consensus        15 ~~~~va~C~s~~gkP~a~ItW~~~~~~~~~-~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~   85 (95)
T cd05719          15 EPVTVATCVSANGKPPATISWETTLGGEAE-TQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQE   85 (95)
T ss_pred             CccEEEEEECCCCcCCCEEEEEeCCCCcce-eEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCC
Confidence            34678899975 799999999997111100 011111222    2346665555566778999999886443

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.56  E-value=0.0031  Score=38.24  Aligned_cols=65  Identities=25%  Similarity=0.521  Sum_probs=39.1

Q ss_pred             cCCcEEEEEEEec-cCCC-eeEEEeCCEECCCCC---eEEEecCCE-EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         71 VRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKRD---YSMSYSDGV-VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~---~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .|+..+|.|.+.| .|.. .+.|+++|..+....   -.....++. .......+...+...|+|.+....
T Consensus        13 ~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~~   83 (94)
T cd05766          13 LSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTPSRGDTYTCVVEHSS   83 (94)
T ss_pred             CCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            5788999999999 4433 679999998865421   111112221 111112233446678999988654

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.53  E-value=0.00032  Score=39.12  Aligned_cols=52  Identities=29%  Similarity=0.473  Sum_probs=35.5

Q ss_pred             ecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         70 QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        70 ~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      -.|.+|+|.|+..+.   .+.|.+++..+....       .  .+.+.+.. ++.|.|.|.+.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~~~g~~-------~--~~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQVSQGSD-------E--KYLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCccCCCCC-------c--eEEeeccC-CCCceEEEEeCCC
Confidence            358899999986532   289999986554421       1  34444555 8899999998543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=97.50  E-value=0.0025  Score=38.53  Aligned_cols=65  Identities=17%  Similarity=0.298  Sum_probs=39.1

Q ss_pred             ecCCcEEEEEEEeccCC--CeeEEEeCCEECCCCCe--EEEecCCEE-EEEEccCCCCCCeEEEEEEEeC
Q psy12421         70 QVRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRDY--SMSYSDGVV-SMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        70 ~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~--~~~~~~~~~-~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ..|....|.|.+.|.-+  ..+.|.++|..+.....  ..-..++.. ......+...+...|+|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~d~tyq~~s~l~~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSKDWTFYLLKSTEFTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECCCCCEEEEEEEEECCCCCCeEEEEEEEC
Confidence            34666789999999443  36799999998762110  111223311 1222234456777899998764

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.44  E-value=0.0024  Score=38.71  Aligned_cols=61  Identities=20%  Similarity=0.425  Sum_probs=37.2

Q ss_pred             cCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCCe---EEEecCCE----EEEEEccCCCCCCeEEEEEEEeC
Q psy12421         71 VRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRDY---SMSYSDGV----VSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~~---~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .++..+|.|.+.| .|. ..+.|.++|..+.....   .....++.    +.|.+.   ..+...|+|.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE---CCCCCeEEEEEEeC
Confidence            3566799999999 443 46799999988754211   11112221    124333   34556899998765

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.31  E-value=0.0049  Score=37.34  Aligned_cols=65  Identities=18%  Similarity=0.346  Sum_probs=39.4

Q ss_pred             cCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCC---eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         71 VRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRD---YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ..+.+.|.|.+.| .|. ..+.|+++|..+....   ......++.    +.|.+..-...+...|+|.+....
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~   86 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG   86 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence            3456899999998 553 5789999998863211   111122221    124444333345678999988754

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.19  E-value=0.0018  Score=39.93  Aligned_cols=66  Identities=21%  Similarity=0.441  Sum_probs=38.6

Q ss_pred             ecCCcEEEEEEEeccCCC--eeEEEeCCEECCCCCe---EEEec---CCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         70 QVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDY---SMSYS---DGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        70 ~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~---~~~~~---~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ..+..++|.|.+.|..++  .+.|+++|..+.....   .....   ++.    +.|.+..-...+...|+|.+....
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            346789999999995444  5699999987653211   00111   131    124443322335567999887653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.06  E-value=0.0035  Score=35.31  Aligned_cols=49  Identities=16%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ...+.|.|..    ...+.|++ |..+....        ..+|-+-+......|.|.|.+.+
T Consensus         6 ~~~V~L~C~~----~tsi~W~k-G~~~~~~~--------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG----ATNITWKK-GKEILEVS--------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC----CCcEEEec-Cccccccc--------ccEEeccCcccCCCcceEecCcc
Confidence            4478999965    25599999 54333211        12567777778889999998766

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02633 hypothetical protein; Provisional

Probab=97.06  E-value=0.003  Score=34.71  Aligned_cols=38  Identities=24%  Similarity=0.341  Sum_probs=31.5

Q ss_pred             EEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       113 ~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      .|+|.+...+|+|.|.|...|..--...++.|.|....
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            69999999999999999999876666777778776544

>KOG3515|consensus

Probab=97.03  E-value=0.00069  Score=54.98  Aligned_cols=81  Identities=17%  Similarity=0.316  Sum_probs=58.3

Q ss_pred             eEEecCCcEEEEEEEeccC-CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc-eEEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVV  144 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l  144 (168)
                      ..+..|+.+.|.|.+.+.| .+.+.|++.+.... .++... ...  +|.........-+.|.|.+.|+.|. ......+
T Consensus        17 ~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-~~~~~~-~~~--~~~~~~~~~~~~~~~~c~a~ns~~~~~~~~~~l   92 (741)
T KOG3515|consen   17 VGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-GRYATI-ADP--TLVTTGDVRDTVAELNCRAFNSVGMPSRCPMIL   92 (741)
T ss_pred             hhhccCCcceeeeecCCCCCCcceEEEecCcccc-cccccc-cCC--ceeeecchhhhhhhhhhhhcccccCceecceee
Confidence            4788999999999988755 56899999876555 232222 222  5777888888889999999999665 3556666


Q ss_pred             EEeeCCC
Q psy12421        145 IVESEEE  151 (168)
Q Consensus       145 ~v~~~p~  151 (168)
                      .+.++|.
T Consensus        93 ~v~~~pa   99 (741)
T KOG3515|consen   93 DVDYPPA   99 (741)
T ss_pred             ccccCcc
Confidence            6666543

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.99  E-value=0.025  Score=33.19  Aligned_cols=63  Identities=29%  Similarity=0.496  Sum_probs=40.4

Q ss_pred             cCCcEEEEEEEec-cCCC-eeEEEeCCEECCCCCeE--EE-ecCCEE----EEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         71 VRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKRDYS--MS-YSDGVV----SMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~~--~~-~~~~~~----~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      .+..+.|.|.+.| .|.. .+.|++++..+......  .. ..++..    .|.+.   ..+...|+|.+.....
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            3788999999998 4533 68999999887543211  11 234421    24444   4555689999887643

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.92  E-value=0.013  Score=35.71  Aligned_cols=68  Identities=18%  Similarity=0.375  Sum_probs=41.5

Q ss_pred             eEEecCCcEEE-EEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         67 RVMQVRQTCKL-LCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        67 ~~~~~g~~~~l-~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ..+.+|+.+.+ .|.+. |.|.+.|+|+.+..-... .......++    .+.+.+......|...++|.+....
T Consensus        11 ~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704          11 LLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTSE-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             eEeecCcceeEEEEEccCCccCCEeEEeCCCCCccc-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            45667887777 88855 799999999976321111 111111122    1235555555567778999998764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.87  E-value=0.016  Score=36.34  Aligned_cols=68  Identities=13%  Similarity=0.266  Sum_probs=44.4

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCC---eeEEEeCCE-EC---------------CCCCeEE--EecCCEEEEEEccCCCC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNR-EL---------------SKRDYSM--SYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~-~~---------------~~~~~~~--~~~~~~~~l~i~~~~~~  122 (168)
                      .....+..|..++|.|.++|....   .++|+|+.. .+               ...++..  ........|.|.+++.+
T Consensus         5 ~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~a~   84 (115)
T cd05721           5 QSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLRAN   84 (115)
T ss_pred             cCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCCHH
Confidence            344567778899999999774433   578887421 11               0111111  22234557999999999


Q ss_pred             CCeEEEEEE
Q psy12421        123 DSGEYKCVA  131 (168)
Q Consensus       123 d~G~Y~C~a  131 (168)
                      |.+.|.|..
T Consensus        85 DTa~Y~Ca~   93 (115)
T cd05721          85 QTDIYFCKI   93 (115)
T ss_pred             HCeEEEEEe
Confidence            999999964

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.85  E-value=0.015  Score=36.59  Aligned_cols=71  Identities=14%  Similarity=0.342  Sum_probs=42.1

Q ss_pred             EecCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCCe---EEEecC-C----EEEEEEccCCCCC-CeEEEEEEEeCCcc
Q psy12421         69 MQVRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRDY---SMSYSD-G----VVSMEIIDCKPED-SGEYKCVATNKHGT  137 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~~---~~~~~~-~----~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  137 (168)
                      +..+..+.|.|.+.| .|. ..+.|++++..+.....   .....+ +    .+.|.+......+ ...|+|.+......
T Consensus        15 ~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~   94 (115)
T cd05769          15 IRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGT   94 (115)
T ss_pred             hccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCc
Confidence            335667899999998 454 37899999988754211   111111 2    1234444333323 56799998876444


Q ss_pred             eE
Q psy12421        138 DE  139 (168)
Q Consensus       138 ~~  139 (168)
                      ..
T Consensus        95 ~~   96 (115)
T cd05769          95 DT   96 (115)
T ss_pred             cc
Confidence            43

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.73  E-value=0.01  Score=36.07  Aligned_cols=30  Identities=27%  Similarity=0.383  Sum_probs=22.8

Q ss_pred             cCCcEEEEEEEeccCCC--eeEEEeCCEECCC
Q psy12421         71 VRQTCKLLCCLSGKPPP--TVKWYKGNRELSK  100 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~  100 (168)
                      .+...+|.|.+.|.-++  .+.|.++|..+..
T Consensus        15 ~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697          15 KQGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             cCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            45678999999994333  5799999987643

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.72  E-value=0.012  Score=35.77  Aligned_cols=65  Identities=15%  Similarity=0.263  Sum_probs=39.1

Q ss_pred             EecCCcEEEEEEEec-cCC--CeeEEEeCCEECCCCCeEEE-----ecCCEEEEEEccCCCCCCe-EEEEEEEeC
Q psy12421         69 MQVRQTCKLLCCLSG-KPP--PTVKWYKGNRELSKRDYSMS-----YSDGVVSMEIIDCKPEDSG-EYKCVATNK  134 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g-~p~--p~i~W~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~  134 (168)
                      +.+|..+++.|.+.+ .|.  ..+.|++....+....+.-.     .......+.+... .+|.| +|.|.|.-.
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftpt-reD~g~~fsC~A~L~   85 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTPT-IEDIGKVLVCRAKLH   85 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEecc-hhhCCcEEEEEEEEe
Confidence            468999999999875 454  57899987765543322110     0111123444443 55655 899987744

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG1480|consensus

Probab=96.59  E-value=0.00096  Score=53.89  Aligned_cols=79  Identities=27%  Similarity=0.397  Sum_probs=59.3

Q ss_pred             EEeecCCeEEecCCcEEEEEE-EeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      |...+....+..+..+.+.|. ..+.|...+.|++++..+.+....+.....  .+.+..+.+.|.|+|+|.+.|.++..
T Consensus       132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~d~--~li~~~arlsd~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRASDH--NLIISQARLSDSGNYTCEATNIVAKR  209 (909)
T ss_pred             hccChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhhcC--Cccccchhhhhcccceeeeehhhccc
Confidence            444555567888888999887 458888999999998877663322222222  58888999999999999999998875


Q ss_pred             EE
Q psy12421        139 ET  140 (168)
Q Consensus       139 ~~  140 (168)
                      ..
T Consensus       210 ~~  211 (909)
T KOG1480|consen  210 KS  211 (909)
T ss_pred             cc
Confidence            43

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.58  E-value=0.02  Score=34.83  Aligned_cols=67  Identities=18%  Similarity=0.374  Sum_probs=37.2

Q ss_pred             EecCCcEEEEEEEecc-CCC--eeEEEeCCEECCCC--CeEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         69 MQVRQTCKLLCCLSGK-PPP--TVKWYKGNRELSKR--DYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~-p~p--~i~W~~~~~~~~~~--~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +..++.++|.|.+.|. -++  .+.|.+++......  .......++.    +.|.+..-...+.-.|+|.+....
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~   86 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD   86 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence            4568889999999998 333  67999987432110  0011112221    123333322233457999987654

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG4597|consensus

Probab=96.46  E-value=0.0037  Score=47.98  Aligned_cols=85  Identities=14%  Similarity=0.145  Sum_probs=61.2

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeC---CEECC--C-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG---NRELS--K-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~---~~~~~--~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      .+....+..+++..++|-+.|++.+.+.|-+.   +..+.  . ..+..........|.|-+....|+|.|+|.+.|..|
T Consensus       202 cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ewq~~a~w~tCs~rcg~g  281 (560)
T KOG4597|consen  202 CPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEWQADAGWYTCSARCGAG  281 (560)
T ss_pred             CcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCccccCCcceeeeeeEEEcchhhcCCCceeeccccccc
Confidence            34446778899999999999999999999653   22111  1 000001112234689999999999999999999999


Q ss_pred             ceEEEEEEEEe
Q psy12421        137 TDETNCVVIVE  147 (168)
Q Consensus       137 ~~~~~~~l~v~  147 (168)
                      ....++.+.+.
T Consensus       282 ~~~rdv~c~s~  292 (560)
T KOG4597|consen  282 FLRRDVPCSSV  292 (560)
T ss_pred             eeeccceeeee
Confidence            99988877754

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.27  E-value=0.089  Score=31.90  Aligned_cols=64  Identities=16%  Similarity=0.305  Sum_probs=36.0

Q ss_pred             cCCcEEEEEEEeccCC--CeeEEEeCCEECCCCC---eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         71 VRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRD---YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .++.+.|.|.+.|.-+  ..+.|.++|.. ....   ......++.    +.|.+..-.......|+|.+....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            3557899999998443  46789999987 3211   011111231    123333322223556999887653

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.18  E-value=0.018  Score=36.94  Aligned_cols=77  Identities=18%  Similarity=0.287  Sum_probs=44.3

Q ss_pred             cCCcEEEEEEEec-----cCCCeeEEEeCCEECC---CCCeEE-----------EecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         71 VRQTCKLLCCLSG-----KPPPTVKWYKGNRELS---KRDYSM-----------SYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        71 ~g~~~~l~C~~~g-----~p~p~i~W~~~~~~~~---~~~~~~-----------~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      -.+++.|.|.+..     .+.-.+.|..++..+-   ......           ....|..+|.+...+.- .|+|+|.+
T Consensus        26 CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeV  104 (130)
T PF08204_consen   26 CNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEV  104 (130)
T ss_dssp             T-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEE
T ss_pred             cCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEE
Confidence            4788999998754     2344689998887541   111111           01123345777664433 79999999


Q ss_pred             EeCCcceEEEEEEEEee
Q psy12421        132 TNKHGTDETNCVVIVES  148 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~  148 (168)
                      ............|.+..
T Consensus       105 t~~~~ege~~i~Lk~~~  121 (130)
T PF08204_consen  105 TELSREGETTIELKYRV  121 (130)
T ss_dssp             EETTEEEEEEEEEEE--
T ss_pred             EecCCCceEEEEEEEEE
Confidence            99887777777777643

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.09  E-value=0.016  Score=41.40  Aligned_cols=50  Identities=24%  Similarity=0.389  Sum_probs=37.4

Q ss_pred             cCCCeeEEEe-CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         84 KPPPTVKWYK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        84 ~p~p~i~W~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ...|.+.|.. ++..+...........|  .|.+.+...+++|.|+|...-..
T Consensus        10 ~iDP~y~W~GP~g~~l~gn~~~nIT~TG--~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   10 LIDPTYLWTGPNGKPLSGNSYVNITETG--KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             cCCCceEEECCCCcccCCCCeEEEccCc--eEEeeccccccCCceEEEEEEEe
Confidence            3578999986 45556655444455566  69999999999999999887543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=95.95  E-value=0.033  Score=34.07  Aligned_cols=66  Identities=17%  Similarity=0.268  Sum_probs=37.3

Q ss_pred             EecCCcEEEEEEEecc--C-CCeeEEEeCCEECCCC-CeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         69 MQVRQTCKLLCCLSGK--P-PPTVKWYKGNRELSKR-DYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~--p-~p~i~W~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +..+..++|.|.+.+.  | ...+.|.+++.. ... .......++    .+.|.+..-.......|+|.+....
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~   89 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE   89 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence            4467789999999984  4 347899999864 210 001111122    1134443222334456999987653

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02982 hypothetical protein; Provisional

Probab=95.91  E-value=0.044  Score=37.87  Aligned_cols=73  Identities=22%  Similarity=0.401  Sum_probs=50.6

Q ss_pred             CeEEecCCcEEEEEEEe-ccCCCeeEEEeCCE-ECC-------------------CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         66 PRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNR-ELS-------------------KRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~-~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +....+++.+.|.|... +.-.....|+++.. -+.                   ...+........++|+|.++..+..
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~STLTIkk~~i~N~  112 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNSSTFTMKKPDPQNL  112 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccceeEEeccCCcccC
Confidence            35566799999999853 34455677987532 111                   0113345556677899999999999


Q ss_pred             eEEEEEEEeCCcce
Q psy12421        125 GEYKCVATNKHGTD  138 (168)
Q Consensus       125 G~Y~C~a~n~~g~~  138 (168)
                      |.|+|.+....+..
T Consensus       113 GCYtc~~ks~~~k~  126 (251)
T PHA02982        113 GCFTCEAKDAEGKE  126 (251)
T ss_pred             CceEEEEecCCCch
Confidence            99999999876553

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.75  E-value=0.19  Score=30.11  Aligned_cols=68  Identities=15%  Similarity=0.318  Sum_probs=45.5

Q ss_pred             eecCCeEEecCCcEEEEEEEec-----cCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSG-----KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ..+....+..|+.++..|....     .....+.|..++..++.+.+... .++.+..++.+......-.|.|.
T Consensus         8 i~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i-n~~~SsVT~~~~~~~~~~L~cC~   80 (89)
T PF06328_consen    8 ISPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI-NDTVSSVTLPNLNPTGATLFCCK   80 (89)
T ss_dssp             EECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE-STTEEEEEESS--SSEEEEEEEE
T ss_pred             EecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee-CCeEEEEEEccCCCCCceEEEEE
Confidence            3456678889999999998752     24567889988887777666544 44546777877776666666665

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PHA03042 CD47-like protein; Provisional

Probab=95.42  E-value=0.16  Score=36.53  Aligned_cols=71  Identities=20%  Similarity=0.309  Sum_probs=45.4

Q ss_pred             cCCcEEEEEEEecc-----CCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         71 VRQTCKLLCCLSGK-----PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        71 ~g~~~~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      -.+++.+.|.....     ..-.+.|..++..+-..+     .....+|.+. ....-.|+|+|.|.+..-.......|.
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n-----~tn~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeLk  103 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKN-----NTNTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIELQ  103 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEec-----CCcceEEEEe-ccccCCCceeEEEeecccCccEEEEEE
Confidence            47789999987542     356799999887553211     1112245553 444458999999998765555566665


Q ss_pred             Ee
Q psy12421        146 VE  147 (168)
Q Consensus       146 v~  147 (168)
                      ..
T Consensus       104 ~~  105 (286)
T PHA03042        104 YV  105 (286)
T ss_pred             EE
Confidence            44

>PHA03376 BARF1; Provisional

Probab=94.96  E-value=0.091  Score=35.95  Aligned_cols=75  Identities=11%  Similarity=0.089  Sum_probs=42.5

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      +.+.+++..|+|.  |   .+.++.......+.-....-.|..+....+.......+..++.|..-|.|.|.++|+.+..
T Consensus        89 LvI~~l~lSDdGt--Y---~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376         89 LVVTAANISHDGN--Y---LCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             EEEEeeeecCCce--E---EEEEEcCCCceeeeeeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheeccccC
Confidence            4467788888666  4   3344444433333332222223333322221222235677899997789999999987643

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=94.54  E-value=0.56  Score=28.95  Aligned_cols=43  Identities=28%  Similarity=0.353  Sum_probs=31.4

Q ss_pred             eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EEEEEEEEe
Q psy12421        103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVE  147 (168)
Q Consensus       103 ~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~  147 (168)
                      +.....+.  +|.|..++..|+|.|.-.+.+..|.. ...+.+.|.
T Consensus        64 ~~F~~enl--aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsVF  107 (108)
T PF11465_consen   64 FNFTSENL--ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSVF  107 (108)
T ss_dssp             EEEETTTT--EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEEE
T ss_pred             EeeeccCc--eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEee
Confidence            33344444  89999999999999999999999986 446666664

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>KOG3515|consensus

Probab=94.43  E-value=0.12  Score=42.58  Aligned_cols=94  Identities=19%  Similarity=0.323  Sum_probs=56.6

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEE--eccCCCeeEEEeCCEECCCCC---eEEE---ec---CCEEEEEEccCCCCC
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCL--SGKPPPTVKWYKGNRELSKRD---YSMS---YS---DGVVSMEIIDCKPED  123 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~--~g~p~p~i~W~~~~~~~~~~~---~~~~---~~---~~~~~l~i~~~~~~d  123 (168)
                      .++|.-...........+..+.+.|.+  .+.|.+.+.|..++.......   ....   ..   ...+.+++......+
T Consensus        95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~  174 (741)
T KOG3515|consen   95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKAD  174 (741)
T ss_pred             ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecC
Confidence            344444434444556667889999954  468889999998876543211   0000   00   111247788888999


Q ss_pred             CeEEEEEEEeC---CcceEEEEEEEEee
Q psy12421        124 SGEYKCVATNK---HGTDETNCVVIVES  148 (168)
Q Consensus       124 ~G~Y~C~a~n~---~g~~~~~~~l~v~~  148 (168)
                      .|+|+|.|.|.   .+..-....+.+..
T Consensus       175 ~g~~tC~A~nr~s~~l~~~~~~~i~v~~  202 (741)
T KOG3515|consen  175 NGNYTCPANNRNSPGLSFAKQLTIIVEA  202 (741)
T ss_pred             CceeEcccccccCccccccceeEeeccc
Confidence            99999999984   33333344444443

>PHA03271 envelope glycoprotein C; Provisional

Probab=92.74  E-value=1.7  Score=33.48  Aligned_cols=44  Identities=16%  Similarity=0.274  Sum_probs=31.1

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCC---eeEEEeCCEECCC
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSK  100 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~~~~~  100 (168)
                      ..+|.+...+  .-+..|+.....|.+...-+|   .+.|+.+|.....
T Consensus       245 ~RPPsVsV~a--~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~V~~  291 (490)
T PHA03271        245 QRPASVDVLA--PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNIATP  291 (490)
T ss_pred             ecCCCccccC--CccccCCCceEEEEeeeecCCCceEEEEEeCCccccC
Confidence            3455554333  356689999999998874433   6799999987754

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=90.96  E-value=2  Score=25.09  Aligned_cols=33  Identities=24%  Similarity=0.437  Sum_probs=21.4

Q ss_pred             EEEEccCCCCCCeEEEEEEE-eCCcceEEEEEEE
Q psy12421        113 SMEIIDCKPEDSGEYKCVAT-NKHGTDETNCVVI  145 (168)
Q Consensus       113 ~l~i~~~~~~d~G~Y~C~a~-n~~g~~~~~~~l~  145 (168)
                      ..........|+|.+.|.|. +..-.......|.
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~   77 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEIL   77 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEE
Confidence            45566778899999999994 4433334344443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=90.01  E-value=1.8  Score=33.25  Aligned_cols=71  Identities=17%  Similarity=0.257  Sum_probs=47.6

Q ss_pred             eEEecCCcEEEEEEEec---cCCCeeEEEeCCEECC------------------CCCeEEEec------CCEEEEEEccC
Q psy12421         67 RVMQVRQTCKLLCCLSG---KPPPTVKWYKGNRELS------------------KRDYSMSYS------DGVVSMEIIDC  119 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g---~p~p~i~W~~~~~~~~------------------~~~~~~~~~------~~~~~l~i~~~  119 (168)
                      ..+.+|.++.+.|..+-   .....+.|+.-+.++.                  ...+.+...      -..++|+|..+
T Consensus       274 ~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIkka  353 (500)
T PHA02914        274 VMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIKKA  353 (500)
T ss_pred             eEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEeeeE
Confidence            45667999999998763   3355678976544321                  122333222      11447999999


Q ss_pred             CCCCCeEEEEEEEeCCcc
Q psy12421        120 KPEDSGEYKCVATNKHGT  137 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~  137 (168)
                      .....|-|.|.|....-.
T Consensus       354 ~I~N~GCY~~~a~~g~~~  371 (500)
T PHA02914        354 HINNAGCYEAQAFMGKFK  371 (500)
T ss_pred             EEEcCCceEEEEecCcch
Confidence            999999999999876433

>PHA03269 envelope glycoprotein C; Provisional

Probab=89.15  E-value=4.4  Score=32.04  Aligned_cols=43  Identities=23%  Similarity=0.403  Sum_probs=30.7

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCC---eeEEEeCCEECCC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSK  100 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~~~~~  100 (168)
                      .+|.+.  ....-+..|+...-.|.+...-++   .+.||.++..+..
T Consensus       328 r~PsVs--V~p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~  373 (566)
T PHA03269        328 KRPNIT--VIGDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK  373 (566)
T ss_pred             cCCCcc--ccCCccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence            455433  334556789999999998774433   6899999888764

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=86.56  E-value=7.7  Score=29.30  Aligned_cols=21  Identities=29%  Similarity=0.835  Sum_probs=16.8

Q ss_pred             cEEEEEEEeccCCC--eeEEEeC
Q psy12421         74 TCKLLCCLSGKPPP--TVKWYKG   94 (168)
Q Consensus        74 ~~~l~C~~~g~p~p--~i~W~~~   94 (168)
                      .++|.|.+.|.-+.  .+.|.++
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999995444  5689999

>PHA03052 Hypothetical protein; Provisional

Probab=84.98  E-value=3.7  Score=23.11  Aligned_cols=34  Identities=15%  Similarity=0.223  Sum_probs=26.1

Q ss_pred             CCeEEecCCcEEEEEEEe-c--cCCCeeEEEeCCEEC
Q psy12421         65 RPRVMQVRQTCKLLCCLS-G--KPPPTVKWYKGNREL   98 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~-g--~p~p~i~W~~~~~~~   98 (168)
                      +...+..|..+++.|.+. |  ...+.+.|.-|+...
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            456788999999999975 3  335678898887766

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=82.62  E-value=7.8  Score=22.87  Aligned_cols=73  Identities=16%  Similarity=0.252  Sum_probs=40.8

Q ss_pred             CCCeEEeecCCeEEecC----CcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVR----QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g----~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      .++.|........+...    ....|.+.+.+. .+.+.||.|+..+....     ...  .+.   +.....|.|+-.+
T Consensus         9 ~~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~-----~~~--~~~---~~~~~~G~h~l~v   77 (89)
T PF06832_consen    9 SPLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQ-----PGH--QLF---WQPDRPGEHTLTV   77 (89)
T ss_pred             CCCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCC-----CCC--eEE---eCCCCCeeEEEEE
Confidence            34555544444333332    245666666665 55999999999883211     011  121   2234668888777


Q ss_pred             EeCCcceE
Q psy12421        132 TNKHGTDE  139 (168)
Q Consensus       132 ~n~~g~~~  139 (168)
                      ....|...
T Consensus        78 vD~~G~~~   85 (89)
T PF06832_consen   78 VDAQGRSA   85 (89)
T ss_pred             EcCCCCEE
Confidence            76666643

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA02633 hypothetical protein; Provisional

Probab=81.67  E-value=0.65  Score=25.67  Aligned_cols=38  Identities=5%  Similarity=-0.042  Sum_probs=25.6

Q ss_pred             CCCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEe
Q psy12421         13 YPQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFW   50 (168)
Q Consensus        13 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~   50 (168)
                      ..+.+||++....|+|.+.+.-.+.+......+.+.+.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCIC   53 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEe
Confidence            67889999999999887544344444555555555554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
3qp3_A	103	Crystal Structure Of Titin Domain M4, Tetragonal Fo		5e-09
3lcy_A	197	Titin Ig Tandem Domains A164-A165 Length = 197		2e-08
1ya5_A	201	Crystal Structure Of The Titin Domains Z1z2 In Comp		3e-07
2a38_A	194	Crystal Structure Of The N-Terminus Of Titin Length		3e-07
1koa_A	491	Twitchin Kinase Fragment (C.Elegans), Autoregulated		5e-07
3uto_A	573	Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-		5e-07
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		6e-07
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		1e-06
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		1e-06
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-06
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-06
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		2e-06
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		3e-06
2rjm_A	284	3ig Structure Of Titin Domains I67-I69 E-To-A Mutat		4e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		4e-06
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		4e-06
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		6e-06
2rik_A	284	I-Band Fragment I67-I69 From Titin Length = 284		6e-06
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		7e-06
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		9e-06
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		9e-06
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-05
2r15_A	212	Crystal Structure Of The Myomesin Domains 12 And 13		1e-05
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		2e-05
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		2e-05
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-05
2yr3_A	99	Solution Structure Of The Fourth Ig-Like Domain Fro		4e-05
2wwk_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		5e-05
2y25_A	317	Crystal Structure Of The Myomesin Domains My11-My13		5e-05
2yd2_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-05
2yd3_A	202	Crystal Structure Of The N-Terminal Ig1-2 Module Of		5e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		7e-05
2ill_A	195	Anomalous Substructure Of Titin-A168169 Length = 19		1e-04
2nzi_A	305	Crystal Structure Of Domains A168-A170 From Titin L		1e-04
2j8h_A	197	Structure Of The Immunoglobulin Tandem Repeat A168-		1e-04
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		2e-04
3knb_B	107	Crystal Structure Of The Titin C-Terminus In Comple		2e-04
2bk8_A	97	M1 Domain From Titin Length = 97		2e-04
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		2e-04
2wp3_O	109	Crystal Structure Of The Titin M10-Obscurin Like 1		3e-04
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		3e-04
2wp3_T	102	Crystal Structure Of The Titin M10-Obscurin Like 1		3e-04
3knb_A	100	Crystal Structure Of The Titin C-Terminus In Comple		3e-04
3ojv_C	226	Crystal Structure Of Fgf1 Complexed With The Ectodo		3e-04
1cvs_C	225	Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex L		3e-04
1evt_C	225	Crystal Structure Of Fgf1 In Complex With The Extra		3e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		5e-04
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		5e-04
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		6e-04
2id5_A	477	Crystal Structure Of The Lingo-1 Ectodomain Length		6e-04
3puc_A	99	Atomic Resolution Structure Of Titin Domain M7 Leng		8e-04

>pdb|3QP3|A Chain A, Crystal Structure Of Titin Domain M4, Tetragonal Form Length = 103

Iteration: 1
 Score = 57.0 bits (136), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/87 (35%), Positives = 46/87 (52%), Gaps = 5/87 (5%)
Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSYSD 109
           T++ AP  T  +R   +   Q  + +  +  KP   VKWY    EL   SK  Y+ +   
Sbjct: 4   TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNT--S 61
Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHG 136
           GV+++EI+DC  +DSG Y+ V TN  G
Sbjct: 62  GVLTLEILDCHTDDSGTYRAVCTNYKG 88

>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165 Length = 197

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 1/91 (1%)
Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSME 115
           AP     ++    ++ +  +L C + G+P P +KWY+  +EL   R Y MS      ++ 
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLT 66
Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           ++  + ED G Y C+ATN+ G  ET+  +++
Sbjct: 67  VMTEEQEDEGVYTCIATNEVGEVETSSKLLL 97

>pdb|1YA5|A Chain A, Crystal Structure Of The Titin Domains Z1z2 In Complex With Telethonin Length = 201

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 4/96 (4%)
Query: 54  VESAPNFTFLLRPRVMQVRQTC--KLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG 110
            E+AP   F+ R + M VRQ    +L   ++G P P VK+Y+   E+ S  D+ +S    
Sbjct: 99  AETAPP-NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           + S+ I +  PEDSG Y   ATN  G   +   ++V
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>pdb|2A38|A Chain A, Crystal Structure Of The N-Terminus Of Titin Length = 194

Iteration: 1
 Score = 50.8 bits (120), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 33/95 (34%), Positives = 50/95 (52%), Gaps = 4/95 (4%)
Query: 55  ESAPNFTFLLRPRVMQVRQT--CKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
           E+AP   F+ R + M VRQ    +L   ++G P P VK+Y+   E+ S  D+ +S    +
Sbjct: 100 ETAPP-NFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDL 158
Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            S+ I +  PEDSG Y   ATN  G   +   ++V
Sbjct: 159 YSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLV 193

>pdb|1KOA|A Chain A, Twitchin Kinase Fragment (C.Elegans), Autoregulated Protein Kinase And Immunoglobulin Domains Length = 491

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 10  SLRYPQDNPRLRTR--AIPKTIP--AYVPEVQQVRRREP----LQITFWQETVESAPNFT 61
           S RY +    ++T+  A P+ +P    +     +R+  P    ++  FW  + E+ P F 
Sbjct: 322 SSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRS-EAQPRF- 379
Query: 62  FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIID 118
            +++P   +V   Q+    C +    PP V W+K +REL +   Y   Y+     + I  
Sbjct: 380 -IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINR 438
Query: 119 CKPEDSGEYKCVATNKHGTDE 139
            K +D GEY   A N +GT E
Sbjct: 439 VKGDDKGEYTVRAKNSYGTKE 459

>pdb|3UTO|A Chain A, Twitchin Kinase Region From C.Elegans (Fn31-Nl-Kin-Crd-Ig26) Length = 573

Iteration: 1
 Score = 50.1 bits (118), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 39/141 (27%), Positives = 65/141 (46%), Gaps = 14/141 (9%)
Query: 10  SLRYPQDNPRLRTR--AIPKTIP--AYVPEVQQVRRREP----LQITFWQETVESAPNFT 61
           S RY +    ++T+  A P+ +P    +     +R+  P    ++  FW  + E+ P F 
Sbjct: 428 SSRYTKIRDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRS-EAQPRF- 485
Query: 62  FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIID 118
            +++P   +V   Q+    C +    PP V W+K +REL +   Y   Y+     + I  
Sbjct: 486 -IVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINR 544
Query: 119 CKPEDSGEYKCVATNKHGTDE 139
            K +D GEY   A N +GT E
Sbjct: 545 VKGDDKGEYTVRAKNSYGTKE 565

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 23/89 (25%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSM--SYSDG 110
           T+++ P F   L      V +  +L   + G  P +V W+K   E+ +   ++  SYS+ 
Sbjct: 473 TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
           + +++    +P ++G+Y C   N+ GT E
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQE 561

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 45  LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS 104
           L I    +T    P  T     RV++V  T  + C   G P P + W K   ++   +  
Sbjct: 100 LTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR 159
Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC 142
            S  DG + +E  + + ED G+Y+CVA N  GT+ +  
Sbjct: 160 YSLKDGFLQIE--NSREEDQGKYECVAENSMGTEHSKA 195

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 46  QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSM 105
           Q+TF+ +     PN+  ++    + + ++    C  +G+P PT +W K    L  RD  +
Sbjct: 288 QLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD-RI 341
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
               G +++ I++    D+G Y+CVA NKHG
Sbjct: 342 QIEQGTLNITIVNLS--DAGMYQCVAENKHG 370

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 46  QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSM 105
           Q+TF+ +     PN+  ++    + + ++    C  +G+P PT +W K    L  RD  +
Sbjct: 289 QLTFYAQ-----PNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRD-RI 342
Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
               G +++ I++    D+G Y+CVA NKHG
Sbjct: 343 QIEQGTLNITIVNLS--DAGMYQCVAENKHG 371

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 67  RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 126
           RV++V  T  + C   G P P + W K   ++   +   S  DG + +E  + + ED G+
Sbjct: 120 RVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDGFLQIE--NSREEDQGK 177
Query: 127 YKCVATNKHGTDETNC 142
           Y+CVA N  GT+ +  
Sbjct: 178 YECVAENSMGTEHSKA 193

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
           AP  T  L  +   + ++ ++ C  SG PPP + W+K N  L + D  +   DG  ++ I
Sbjct: 10  APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRNLTI 68
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
              + ED G Y C A +  G  +     I+
Sbjct: 69  RRVRKEDEGLYTCQACSVLGCAKVEAFFII 98

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
           AP  T  L  +   + ++ ++ C  SG PPP + W+K N  L + D  +   DG  ++ I
Sbjct: 666 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRNLTI 724
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
              + ED G Y C A +  G  +     I+
Sbjct: 725 RRVRKEDEGLYTCQACSVLGCAKVEAFFII 754

>pdb|2RJM|A Chain A, 3ig Structure Of Titin Domains I67-I69 E-To-A Mutated Variant Length = 284

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 2/85 (2%)
Query: 51  QETVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYS 108
           Q  V++ P F   L P R+++  +  +  C + G P   V WYK   E+ +   + MS+ 
Sbjct: 92  QLGVQAPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFV 151
Query: 109 DGVVSMEIIDCKPEDSGEYKCVATN 133
           + V  +E+ +   EDSG+Y C A N
Sbjct: 152 ESVAVLEMYNLSVEDSGDYTCEAHN 176

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 6/106 (5%)
Query: 32  YVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKW 91
           Y  E + ++ R+  Q       + + P++  ++      +    +  C  SGKP P V+W
Sbjct: 272 YECEAENIKGRDTYQGRI---IIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328
Query: 92  YKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
            +  + L+ ++  +  S G +    +    EDSG Y+CVA NKHGT
Sbjct: 329 LRDGQPLASQN-RIEVSGGELRFSKLVL--EDSGMYQCVAENKHGT 371

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 47.4 bits (111), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 10/108 (9%)
Query: 47  ITFWQETVESAPNFTFLLRPRVMQ--------VRQTCKLLCCLSGKPPPTVKWYKGNREL 98
           +T+  E + ++   T L+ P  +              +  C +SGKP PTV W K    +
Sbjct: 294 VTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVV 353
Query: 99  SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
              DY      G  ++ I+     D G Y+CVA N+ G  +++  +IV
Sbjct: 354 IPSDYFQIV--GGSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
           V++ P +  ++      +    +  C  +GKP PTV+W +    L+ ++     +     
Sbjct: 290 VQAQPEWLKVISDTEADIGSNLRWGCAAAGKPRPTVRWLRNGEPLASQNRVEVLAG---D 346
Query: 114 MEIIDCKPEDSGEYKCVATNKHGT 137
           +       EDSG Y+CVA NKHGT
Sbjct: 347 LRFSKLSLEDSGMYQCVAENKHGT 370

>pdb|2RIK|A Chain A, I-Band Fragment I67-I69 From Titin Length = 284

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 57  APNFTFLLRPRV--MQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGVVS 113
           AP F F L+P    + + ++    C ++G  P  + W K NRE+    +Y M+  +   +
Sbjct: 4   APPF-FDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 62
Query: 114 MEIIDCKPEDSGEYKCVATNKHGTD 138
           + ++     D+G+Y C A+N  G D
Sbjct: 63  LTVLKVTKGDAGQYTCYASNVAGKD 87

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 46.6 bits (109), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 10/93 (10%)
Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLL--------CCLSGKPPPTVKWYKGNRELSKRDYS 104
            VES       ++P++ +     K++        C   G P P+V W KG+  L +    
Sbjct: 88  AVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRI 147
Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
                G  S+ I + + ED+G+Y+CVA N  GT
Sbjct: 148 AVLESG--SLRIHNVQKEDAGQYRCVAKNSLGT 178

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 56  SAPNFTFLL-RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV--V 112
           SAP    L+ +P  + V  T  LLC   G P P+ +WYK   E + R  ++  +D V  V
Sbjct: 216 SAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYK-FIEGTTRKQAVVLNDRVKQV 274
Query: 113 SMEII--DCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           S  +I  D   EDSG+Y CV  N  G +    V+ V
Sbjct: 275 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 310

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/96 (36%), Positives = 48/96 (50%), Gaps = 6/96 (6%)
Query: 56  SAPNFTFLL-RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV--V 112
           SAP    L+ +P  + V  T  LLC   G P P+ +WYK   E + R  ++  +D V  V
Sbjct: 210 SAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYK-FIEGTTRKQAVVLNDRVKQV 268
Query: 113 SMEII--DCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           S  +I  D   EDSG+Y CV  N  G +    V+ V
Sbjct: 269 SGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTV 304

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/75 (29%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 67  RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY----SDGVVSMEIIDCKPE 122
           +V++  +T  +LC  SG P P + W+K    +   + +       S+ + +++I   +  
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEES 177
Query: 123 DSGEYKCVATNKHGT 137
           D G+Y+CVATN  GT
Sbjct: 178 DQGKYECVATNSAGT 192

>pdb|2R15|A Chain A, Crystal Structure Of The Myomesin Domains 12 And 13 Length = 212

Iteration: 1
 Score = 45.4 bits (106), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 42/80 (52%), Gaps = 2/80 (2%)
Query: 69  MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIID-CKPEDSGE 126
           +Q  +   L C + G PPP V W K  + L++ D+ ++ +  G  +   I+     DSG+
Sbjct: 129 IQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGK 188
Query: 127 YKCVATNKHGTDETNCVVIV 146
           Y  V  NK+G++ ++  V V
Sbjct: 189 YGLVVKNKYGSETSDFTVSV 208

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 68  VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSM--EIIDCKPE 122
           V++  +   L C + GKP PT++W+K    +S   K+ + + + DG +     +   K +
Sbjct: 20  VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 123 DSGEYKCVATNKHG 136
           D GEY CVA N+ G
Sbjct: 80  DGGEYWCVAKNRVG 93

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 5/74 (6%)
Query: 68  VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSM--EIIDCKPE 122
           V++  +   L C + GKP PT++W+K    +S   K+ + + + DG +     +   K +
Sbjct: 20  VVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQ 79
Query: 123 DSGEYKCVATNKHG 136
           D GEY CVA N+ G
Sbjct: 80  DGGEYWCVAKNRVG 93

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Query: 77  LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
           L C  SG P P + WYK   +L        + +   ++ I +   EDSGEY C+A+NK G
Sbjct: 242 LECIASGVPTPDIAWYKKGGDLPSD--KAKFENFNKALRITNVSEEDSGEYFCLASNKMG 299
Query: 137 T 137
           +
Sbjct: 300 S 300

>pdb|2YR3|A Chain A, Solution Structure Of The Fourth Ig-Like Domain From Myosin Light Chain Kinase, Smooth Muscle Length = 99

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 27/84 (32%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSD-GVV 112
           +E AP+F+ +L+   +   Q   L C + G P P + W    + +    Y+ S  + GV 
Sbjct: 8   MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI---QYARSTCEAGVA 64
Query: 113 SMEIIDCKPEDSGEYKCVATNKHG 136
            + I D  PED G Y C+A N  G
Sbjct: 65  ELHIQDALPEDHGTYTCLAENALG 88

>pdb|2WWK|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig F17r Mutant Complex Length = 109

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 3/75 (4%)
Query: 62  FLLRPRVMQV--RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV-SMEIID 118
           FL RPR ++V      +L C + G+PPP V W KG ++L+  +     +DG    + +  
Sbjct: 17  FLRRPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTA 76
Query: 119 CKPEDSGEYKCVATN 133
             P D+G Y C A N
Sbjct: 77  ALPTDAGVYVCRARN 91

>pdb|2Y25|A Chain A, Crystal Structure Of The Myomesin Domains My11-My13 Length = 317

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
Query: 69  MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSDGVVSMEIID-CKPEDSGE 126
           +Q  +   L C + G PPP V W K  + L+  D+ ++ +  G  +   I+     DSG+
Sbjct: 234 IQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGK 293
Query: 127 YKCVATNKHGTDETNCVVIV 146
           Y  V  NK+G++ ++  V V
Sbjct: 294 YGLVVKNKYGSETSDFTVSV 313

>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV-- 112
           PN     + +V++  +T  +LC  SG P P + W+K        D+     S S+G +  
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK--------DFLPVDPSASNGRIKQ 160
Query: 113 ----SMEIIDCKPEDSGEYKCVATNKHG 136
               +++I   +  D G+Y+CVATN  G
Sbjct: 161 LRSGALQIESSEETDQGKYECVATNSAG 188

>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 202

Iteration: 1
 Score = 43.5 bits (101), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 17/88 (19%)
Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV-- 112
           PN     + +V++  +T  +LC  SG P P + W+K        D+     S S+G +  
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK--------DFLPVDPSASNGRIKQ 160
Query: 113 ----SMEIIDCKPEDSGEYKCVATNKHG 136
               +++I   +  D G+Y+CVATN  G
Sbjct: 161 LRSGALQIESSEETDQGKYECVATNSAG 188

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 40.4 bits (93), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 38/90 (42%), Gaps = 5/90 (5%)
Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
           AP F+ L     +       + C   G P P VKW +G  +L+  D  M     V  +E+
Sbjct: 205 APRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPED-DMPVGRNV--LEL 261
Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            D K  DS  Y CVA +  G  E    + V
Sbjct: 262 TDVK--DSANYTCVAMSSLGVIEAVAQITV 289

>pdb|2ILL|A Chain A, Anomalous Substructure Of Titin-A168169 Length = 195

Iteration: 1
 Score = 42.7 bits (99), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS---MSYSDGVVS 113
           AP+F   LR   ++ +    L+C ++G P P VKWY+  +E+           +  G   
Sbjct: 2   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 61
Query: 114 MEIIDCKPEDSGEYKCVATNKHGT 137
           + I     +D+  Y+  ATN+ G+
Sbjct: 62  LIIASVTDDDATVYQVRATNQGGS 85

>pdb|2NZI|A Chain A, Crystal Structure Of Domains A168-A170 From Titin Length = 305

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS---MSYSDGVVS 113
           AP+F   LR   ++ +    L+C ++G P P VKWY+  +E+           +  G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 114 MEIIDCKPEDSGEYKCVATNKHGT 137
           + I     +D+  Y+  ATN+ G+
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGS 87

>pdb|2J8H|A Chain A, Structure Of The Immunoglobulin Tandem Repeat A168-A169 Of Titin Length = 197

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS---MSYSDGVVS 113
           AP+F   LR   ++ +    L+C ++G P P VKWY+  +E+           +  G   
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63
Query: 114 MEIIDCKPEDSGEYKCVATNKHGT 137
           + I     +D+  Y+  ATN+ G+
Sbjct: 64  LIIASVTDDDATVYQVRATNQGGS 87

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 17/80 (21%)
Query: 67  RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV------SMEII 117
           +V++  +T  +LC   G P P + W+K        D+     + S+G +      +++I 
Sbjct: 118 KVVEKARTATMLCAAGGNPDPEISWFK--------DFLPVDPATSNGRIKQLRSGALQIE 169
Query: 118 DCKPEDSGEYKCVATNKHGT 137
             +  D G+Y+CVATN  GT
Sbjct: 170 SSEESDQGKYECVATNSAGT 189

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 23/80 (28%), Positives = 40/80 (50%), Gaps = 17/80 (21%)
Query: 67  RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV------SMEII 117
           +V++  +T  +LC   G P P + W+K        D+     + S+G +      +++I 
Sbjct: 119 KVVEKGRTATMLCAAGGNPDPEISWFK--------DFLPVDPAASNGRIKQLRSGALQIE 170
Query: 118 DCKPEDSGEYKCVATNKHGT 137
             +  D G+Y+CVATN  GT
Sbjct: 171 SSEESDQGKYECVATNSAGT 190

>pdb|3KNB|B Chain B, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 107

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV-SM 114
           S P F    RP  +      +L C + G+PPP V W KG ++L+  +     +DG    +
Sbjct: 12  SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 71
Query: 115 EIIDCKPEDSGEYKCVATN 133
            +    P D+G Y C A N
Sbjct: 72  LLTAALPTDAGVYVCRARN 90

>pdb|2BK8|A Chain A, M1 Domain From Titin Length = 97

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
Query: 76  KLLCCLSGKPPPT-VKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
           K +C +      T V WY G R+L   + Y ++Y DGV  + + D    D G Y+C   N
Sbjct: 20  KYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVN 79
Query: 134 KHGTDET 140
            +G D +
Sbjct: 80  DYGEDSS 86

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 17/88 (19%)
Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVV-- 112
           PN     + +V++  +T  +LC  SG P P + W+K        D+     S S+G +  
Sbjct: 109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK--------DFLPVDPSTSNGRIKQ 160
Query: 113 ----SMEIIDCKPEDSGEYKCVATNKHG 136
                ++I   +  D G+Y+CVA+N  G
Sbjct: 161 LRSGGLQIESSEETDQGKYECVASNSAG 188

>pdb|2WP3|O Chain O, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 109

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV-SM 114
           S P F    RP  +      +L C + G+PPP V W KG ++L+  +     +DG    +
Sbjct: 13  SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGL 72
Query: 115 EIIDCKPEDSGEYKCVATN 133
            +    P D+G Y C A N
Sbjct: 73  LLTAALPTDAGVYVCRARN 91

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 62  FLLRPRVMQVRQT--CKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSD-GVVSMEII 117
           F+  P  M + +   C++   +SG P P V WY   R +   D + M  S+ G+ S+   
Sbjct: 8   FIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFE 67
Query: 118 DCKPEDSGEYKCVATNKHG 136
             +  D+G Y CVA N+ G
Sbjct: 68  VVRASDAGAYACVAKNRAG 86

>pdb|2WP3|T Chain T, Crystal Structure Of The Titin M10-Obscurin Like 1 Ig Complex Length = 102

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDG 110
           +E+ P+   +   +V+ V       C  +G+P P V W  G R++  ++   + +  +D 
Sbjct: 10  IEALPSDISIDEGKVLTVA------CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 63
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTD 138
           + ++ I+D + +D G Y     N+ G+D
Sbjct: 64  LTTLIIMDVQKQDGGLYTLSLGNEFGSD 91

>pdb|3KNB|A Chain A, Crystal Structure Of The Titin C-Terminus In Complex With Obscurin- Like 1 Length = 100

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/88 (23%), Positives = 44/88 (50%), Gaps = 9/88 (10%)
Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDG 110
           +E+ P+   +   +V+ V       C  +G+P P V W  G R++  ++   + +  +D 
Sbjct: 8   IEALPSDISIDEGKVLTVA------CAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDD 61
Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTD 138
           + ++ I+D + +D G Y     N+ G+D
Sbjct: 62  LTTLIIMDVQKQDGGLYTLSLGNEFGSD 89

>pdb|3OJV|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr1c Exhibiting An Ordered Ligand Specificity-Determining Betac'-Betae Loop Length = 226

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKR----DYSMSYSDGVVSMEIIDCKPEDSGEYK 128
           +T K  C  SG P PT++W K  +E         Y + Y+   + M+ +   P D G Y 
Sbjct: 33  KTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYT 90
Query: 129 CVATNKHGT 137
           C+  N++G+
Sbjct: 91  CIVENEYGS 99

>pdb|1CVS|C Chain C, Crystal Structure Of A Dimeric Fgf2-Fgfr1 Complex Length = 225

Iteration: 1
 Score = 41.2 bits (95), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKR----DYSMSYSDGVVSMEIIDCKPEDSGEYK 128
           +T K  C  SG P PT++W K  +E         Y + Y+   + M+ +   P D G Y 
Sbjct: 32  KTVKFKCPSSGTPQPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYT 89
Query: 129 CVATNKHGT 137
           C+  N++G+
Sbjct: 90  CIVENEYGS 98

>pdb|1EVT|C Chain C, Crystal Structure Of Fgf1 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 1 (Fgfr1) Length = 225

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 6/69 (8%)
Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKR----DYSMSYSDGVVSMEIIDCKPEDSGEYK 128
           +T K  C  SG P PT++W K  +E         Y + Y+   + M+ +   P D G Y 
Sbjct: 32  KTVKFKCPSSGTPNPTLRWLKNGKEFKPDHRIGGYKVRYATWSIIMDSV--VPSDKGNYT 89
Query: 129 CVATNKHGT 137
           C+  N++G+
Sbjct: 90  CIVENEYGS 98

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 71  VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE--DSGEYK 128
           + Q+  L C   G P PT+ W K    + + D    YS      E+I  K +  D  EY 
Sbjct: 27  LSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELIIKKVDKSDEAEYI 86
Query: 129 CVATNKHG 136
           C+A NK G
Sbjct: 87  CIAENKAG 94

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 40.4 bits (93), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
           Q+  L+C   G P PT+ W K    +      D    +SD    + I +    D  EY C
Sbjct: 212 QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 271
Query: 130 VATNKHG 136
           +A NK G
Sbjct: 272 IAENKAG 278

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 5/77 (6%)
Query: 74  TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV--VSMEII--DCKPEDSGEYKC 129
           T  LLC   G P P  +WYK   E + R  ++  +D V  VS  +I  D   EDSG+Y C
Sbjct: 265 TMALLCPAQGYPVPVFRWYK-FIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLC 323
Query: 130 VATNKHGTDETNCVVIV 146
           V  N  G +    V+ V
Sbjct: 324 VVNNSVGGESVETVLTV 340

>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain Length = 477

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 20/69 (28%), Positives = 36/69 (52%), Gaps = 5/69 (7%)
Query: 73  QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKC 129
            T + +C   G PPP + W    + L  +K +  ++ + DG  ++E+   + +D+G Y C
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLC 458
Query: 130 VATNKHGTD 138
           +A N  G D
Sbjct: 459 IAANAGGND 467

>pdb|3PUC|A Chain A, Atomic Resolution Structure Of Titin Domain M7 Length = 99

Iteration: 1
 Score = 39.7 bits (91), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 1/94 (1%)
Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVV 112
           + S P     L+   +      K     +G+P PT  W K  + +++   Y +S   G  
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62
Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            +EI      DSG Y C   N  G+  ++C + +
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-40
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	8e-32
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-31
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	9e-31
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-30
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	9e-30
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	6e-29
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	7e-29
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-28
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-28
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	1e-28
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-28
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-28
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-28
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	9e-28
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	3e-27
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	4e-27
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	8e-22
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-26
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	4e-22
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-26
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	3e-25
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-26
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-25
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	3e-24
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	5e-21
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-25
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	8e-25
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-20
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-24
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	6e-21
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	1e-23
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	6e-23
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-21
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-18
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	1e-22
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-22
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	4e-22
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-22
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-12
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	9e-11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-09
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-08
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	4e-22
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-21
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	1e-17
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	4e-22
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	7e-22
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	4e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-19
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	8e-22
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	9e-22
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-21
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	7e-17
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-21
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-18
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	6e-21
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-20
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-13
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-12
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-20
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	2e-20
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	3e-20
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-20
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	3e-20
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	4e-20
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-17
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-20
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-16
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-14
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	6e-20
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	6e-20
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-13
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-19
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	6e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-19
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	8e-16
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-19
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	3e-19
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	1e-18
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	4e-19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	5e-19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	9e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-18
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-17
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-13
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-08
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-04
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	6e-19
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	2e-18
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-18
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	2e-18
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	2e-18
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-18
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-14
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-10
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-18
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-16
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	2e-11
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-08
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	3e-18
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-18
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-18
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	3e-12
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	6e-18
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	2e-16
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	7e-16
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	9e-11
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	7e-18
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-17
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-17
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	3e-17
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	4e-16
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	9e-17
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-13
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-08
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-17
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-17
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	3e-12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	7e-17
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	2e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-09
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-17
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	9e-17
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	6e-15
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	1e-16
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-16
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	1e-09
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-16
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-15
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-14
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	5e-12
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-16
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-16
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	6e-16
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	1e-15
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	4e-13
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	1e-15
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-14
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	3e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	1e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-15
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	3e-12
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-11
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-10
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-15
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	7e-15
1he7_A	126	High affinity nerve growth factor receptor; transf	2e-15
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-15
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	9e-15
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-08
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-15
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	4e-11
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	3e-15
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-15
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	4e-13
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	4e-15
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-07
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	2e-05
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-15
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-10
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-06
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-14
2ens_A	96	Advanced glycosylation END product-specific recept	2e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	2e-14
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-14
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-14
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	3e-14
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-13
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-12
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	7e-11
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-10
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-09
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-08
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	1e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-13
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-05
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-13
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	3e-12
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	9e-08
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-12
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	2e-09
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	9e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-12
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-08
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	7e-07
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-12
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-08
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-12
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	4e-06
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-10
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-11
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	4e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-11
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	1e-08
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-11
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	3e-10
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	7e-11
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	5e-07
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-11
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	3e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	4e-04
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	3e-10
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	5e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	3e-10
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-06
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	6e-06
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-10
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-09
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-09
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	8e-10
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-09
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-07
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	6e-06
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-09
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-09
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-04
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	5e-09
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	9e-06
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	2e-05
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	5e-09
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	9e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	5e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-07
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	4e-06
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	6e-04
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	5e-09
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-08
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	4e-08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-08
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-07
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-08
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-07
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-08
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-07
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	1e-06
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-07
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	4e-07
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	5e-07
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	5e-07
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	6e-07
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	8e-07
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-06
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	2e-04
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-06
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	6e-06
2jtd_A	142	Myomesin-1, skelemin; immunoglobulin domain, muscl	1e-05
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	2e-05
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	2e-05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-05
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	7e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	4e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	6e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	5e-05
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	7e-05
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	1e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	2e-04
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	4e-04
3nvq_A	590	Semaphorin-7A; beta-propeller, signaling, signalin	2e-04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	6e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	6e-04
3l5h_A	589	Interleukin-6 receptor subunit beta; IG-like, FNII	7e-04

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score =  129 bits (327), Expect = 7e-40
 Identities = 29/99 (29%), Positives = 47/99 (47%), Gaps = 1/99 (1%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGV 111
           T++ AP  T  +R   +   Q  + +  +  KP   VKWY    EL +      + + GV
Sbjct: 4   TLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGV 63

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
           +++EI+DC  +DSG Y+ V TN  G       + V   +
Sbjct: 64  LTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDVTGGD 102

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score =  108 bits (273), Expect = 8e-32
 Identities = 21/97 (21%), Positives = 44/97 (45%), Gaps = 2/97 (2%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVV 112
           ++ P F   L  + ++  Q   +   + G+P P V W +  + +   +R ++     G+ 
Sbjct: 3   KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLC 62

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
            + I+  +  D+G Y C A N++G  +    + V  E
Sbjct: 63  RLRILAAERGDAGFYTCKAVNEYGARQCEARLEVRGE 99

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score =  108 bits (272), Expect = 1e-31
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 2/96 (2%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVS 113
            AP     ++ + +           + GKP P  +WYK   ++  S R Y     D V  
Sbjct: 4   EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE 63

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
           + I D   EDS      A N  G   ++  ++V+++
Sbjct: 64  LVIRDVTGEDSASIMVKAINIAGETSSHAFLLVQAK 99

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score =  106 bits (266), Expect = 9e-31
 Identities = 23/96 (23%), Positives = 39/96 (40%), Gaps = 1/96 (1%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVV 112
           + S P     L+   +      K     +G+P PT  W K  + +     Y +S   G  
Sbjct: 3   ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGF 62

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            +EI      DSG Y C   N  G+  ++C + +++
Sbjct: 63  FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTIKA 98

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score =  105 bits (265), Expect = 2e-30
 Identities = 22/101 (21%), Positives = 41/101 (40%), Gaps = 3/101 (2%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYS-DGV 111
             AP F   L+   +         C ++G P P + W+K  +++S +   Y++    DG 
Sbjct: 6   SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGT 65

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
            S+       +D G Y  +A N  G       ++V++    
Sbjct: 66  CSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNSG 106

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score =  103 bits (259), Expect = 9e-30
 Identities = 27/94 (28%), Positives = 42/94 (44%), Gaps = 2/94 (2%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
            +E AP+F+ +L+   +   Q   L C + G P P + W    + +  +    +   GV 
Sbjct: 7   GMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPI--QYARSTCEAGVA 64

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            + I D  PED G Y C+A N  G    +  V V
Sbjct: 65  ELHIQDALPEDHGTYTCLAENALGQVSCSAWVTV 98

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score =  101 bits (254), Expect = 6e-29
 Identities = 25/97 (25%), Positives = 40/97 (41%), Gaps = 2/97 (2%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSK-RDYSMSYSDGVVSM 114
               +  +   V +     K +C +      T V WY G R+L     Y ++Y DGV  +
Sbjct: 1   GAMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAIL 60

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
            + D    D G Y+C   N +G D +   + V+   E
Sbjct: 61  YVKDITKLDDGTYRCKVVNDYGEDSSYAELFVKGVRE 97

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score =  101 bits (254), Expect = 7e-29
 Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 1/95 (1%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVV 112
              A       R   +   ++ +  C   G+P PTV W +  + L +   + ++ +    
Sbjct: 11  TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKS 70

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           + EI   +  D G Y  V  N  G  E    + ++
Sbjct: 71  TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTIQ 105

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score =  102 bits (256), Expect = 1e-28
 Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 2/109 (1%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYS- 108
           +E     P FT  +    +      +  C + G P P V W+K +  + + R + + Y  
Sbjct: 35  EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 94

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
           +G  S+ I +   +D  +Y C A N  G       ++VE+  +  E + 
Sbjct: 95  EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKEGEGEG 143

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score =  101 bits (253), Expect = 1e-28
 Identities = 17/97 (17%), Positives = 38/97 (39%), Gaps = 1/97 (1%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG 110
            +  S P        + ++  ++ +L   ++G  P T  W K  +++       +  S+ 
Sbjct: 2   SSGSSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSEN 61

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
              + I+  + E  G Y  +  NK G+ +    + V 
Sbjct: 62  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVV 98

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score =  100 bits (250), Expect = 3e-28
 Identities = 26/97 (26%), Positives = 42/97 (43%), Gaps = 2/97 (2%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYS-DGVVS 113
             P F  +     +   + C++   +SG P P V WY   R + S   + M  S  G+ S
Sbjct: 4   GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS 63

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
           +     +  D+G Y CVA N+ G       + V ++E
Sbjct: 64  LIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLAKE 100

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 99.4 bits (248), Expect = 6e-28
 Identities = 24/102 (23%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
           +    P+F        +Q  + C++ C +SG P P + W    + +        +   +G
Sbjct: 5   SSGFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENG 64

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
           V S+ I      D+G Y C+ATN+ G +  +  ++V ++E  
Sbjct: 65  VHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKESG 106

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 98.5 bits (246), Expect = 9e-28
 Identities = 24/92 (26%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSME 115
            P      R   ++   T  L     G P PT  W  G+       +  +       S+ 
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
               K  DSG YK    N+ G DE    VIV+
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 97.9 bits (244), Expect = 3e-27
 Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 3/100 (3%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSYS 108
              + AP F +  + + +    + KL C +S  PPP + W + N  +   + R      +
Sbjct: 10  HEHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDN 69

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            G V++ I D   +D+G Y   A N+ G    N  + V +
Sbjct: 70  TGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTA 109

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 99.8 bits (249), Expect = 4e-27
 Identities = 27/96 (28%), Positives = 51/96 (53%), Gaps = 1/96 (1%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVS 113
             AP     ++    ++ +  +L C + G+P P +KWY+  +EL   R Y MS      +
Sbjct: 5   GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHT 64

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
           + ++  + ED G Y C+ATN+ G  ET+  +++++ 
Sbjct: 65  LTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQAT 100

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 86.3 bits (214), Expect = 8e-22
 Identities = 19/100 (19%), Positives = 43/100 (43%), Gaps = 5/100 (5%)

Query: 53  TVESAPNFT---FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYS 108
            +++ P F     L       V  T +L     G+P P + W+ G + L +  + ++  +
Sbjct: 96  LLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFHGQKLLQNSENITIENT 155

Query: 109 DGVVSMEIIDC-KPEDSGEYKCVATNKHGTDETNCVVIVE 147
           +    + + +  +   +G+YK   +N  GT +    V ++
Sbjct: 156 EHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 97.9 bits (244), Expect = 3e-26
 Identities = 26/100 (26%), Positives = 46/100 (46%), Gaps = 3/100 (3%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSM-SYSDGV 111
             AP+F   LR   ++ +    L+C ++G P P VKWY+  +E+      Y +  +  G 
Sbjct: 2   AMAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGY 61

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
             + I     +D+  Y+  ATN+ G+      + VE   +
Sbjct: 62  HQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAK 101

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 87.1 bits (216), Expect = 4e-22
 Identities = 19/93 (20%), Positives = 34/93 (36%), Gaps = 2/93 (2%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSME 115
            P     +        +   +    SGKP P + W KG   +     Y +  +    S+ 
Sbjct: 104 LPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLV 163

Query: 116 IID-CKPEDSGEYKCVATNKHGTDETNCVVIVE 147
             +  + +D+G Y   A N+ G D+    + V 
Sbjct: 164 FPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 97.1 bits (242), Expect = 4e-26
 Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 3/101 (2%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDG 110
              AP FT  L+  V+    T      +SG P P V W++  + +S        +S+SDG
Sbjct: 2   TTQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDG 61

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
              + I      +SG Y   ATN  G   +   ++V++E  
Sbjct: 62  RAKLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETA 102

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 94.8 bits (236), Expect = 3e-25
 Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 1/97 (1%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG 110
           +   + PNF   L+   ++     +L   ++G P P VK+Y+   E+ S  D+ +S    
Sbjct: 98  KAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGD 157

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           + S+ I +  PEDSG Y   ATN  G   +   ++V+
Sbjct: 158 LYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 94.4 bits (235), Expect = 7e-26
 Identities = 22/96 (22%), Positives = 34/96 (35%), Gaps = 3/96 (3%)

Query: 54  VESAPNFTF---LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
           +   P       L +  + +V +   L+    GKP P V W KG   L      +  SD 
Sbjct: 18  IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDF 77

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                +      DSGEY+     ++  D     + V
Sbjct: 78  DTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 97.1 bits (242), Expect = 3e-25
 Identities = 28/97 (28%), Positives = 44/97 (45%), Gaps = 1/97 (1%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
            V+  P F     P          L C L G PP  V W+K  REL S + Y +   + +
Sbjct: 188 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 247

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            S+ I++    D GEY+C A+N  G+      + +++
Sbjct: 248 TSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLKA 284

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 94.4 bits (235), Expect = 3e-24
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 53  TVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDG 110
            V+  P F   L P R+++  +  +  C + G P   V WYK   E+ +   + MS+ + 
Sbjct: 94  GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 153

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           V  +E+ +   EDSG+Y C A N  G+  ++  + V+ 
Sbjct: 154 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 191

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 85.9 bits (213), Expect = 5e-21
 Identities = 21/94 (22%), Positives = 43/94 (45%), Gaps = 1/94 (1%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSM 114
           + P F        + + ++    C ++G  P  + W K NRE+    +Y M+  +   ++
Sbjct: 4   APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATL 63

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            ++     D+G+Y C A+N  G D  +  + V+ 
Sbjct: 64  TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 97

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 92.4 bits (230), Expect = 3e-25
 Identities = 28/99 (28%), Positives = 44/99 (44%), Gaps = 1/99 (1%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
               AP  T  L  +   + ++ ++ C  SG PPP + W+K N  L   D  +   DG  
Sbjct: 6   LERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLV-EDSGIVLKDGNR 64

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
           ++ I   + ED G Y C A +  G  +     I+E  +E
Sbjct: 65  NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQE 103

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 94.2 bits (234), Expect = 8e-25
 Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 2/98 (2%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVV 112
             A     L     +Q  +   L C + G PPP V W K  + L  +        +    
Sbjct: 115 NRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTA 174

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
              I      DSG+Y  V  NK+G++ ++  V V   E
Sbjct: 175 YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIPE 212

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 81.5 bits (201), Expect = 7e-20
 Identities = 10/87 (11%), Positives = 30/87 (34%), Gaps = 2/87 (2%)

Query: 73  QTCKLLCCLS-GKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
           +  +L   ++       V W      +   D      +   + ++I +  P D G+Y   
Sbjct: 18  EGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVME 77

Query: 131 ATNKHGTDETNCVVIVESEEESKEQQE 157
             +     +    +  ++ +E+  + +
Sbjct: 78  LFDGKTGHQKTVDLSGQAYDEAYAEFQ 104

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 92.6 bits (230), Expect = 4e-24
 Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 3/107 (2%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDG 110
           ET E+ P FT     +          +C  +G P P + W K  +++S  R   + + DG
Sbjct: 1   ETGETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDG 60

Query: 111 VVSMEIID--CKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 155
             S+  I     P D   Y+CVA+N  G    +  + V  E++    
Sbjct: 61  SGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRG 107

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 84.1 bits (208), Expect = 6e-21
 Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 5/116 (4%)

Query: 45  LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL----SK 100
           L +    +     P      + +V++  +T  +LC  SG P P + W+K    +    + 
Sbjct: 96  LTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNN 155

Query: 101 RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESEEESKEQ 155
                  S+ + +++I   +  D G+Y+CVATN  GT  +    + V   +     
Sbjct: 156 GRIKQLRSESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTKHHHHH 211

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 88.3 bits (219), Expect = 1e-23
 Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 55  ESAPNFT--FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYS 108
           + AP +T    +  R+  V    T K  C   G P PT++W K  +E  +  R       
Sbjct: 2   KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVR 61

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           +   S+ +    P D G Y CV  N++G+      + V
Sbjct: 62  NQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 91.5 bits (227), Expect = 6e-23
 Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 3/107 (2%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDG 110
               + P+F   L   V        L C ++  K    + WYK  RE+S  D    + DG
Sbjct: 2   IDPFTGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHIVWYKDEREIS-VDEKHDFKDG 59

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
           + ++ I +   +D+G Y+ +  +  G D++   ++ E+ +E   +  
Sbjct: 60  ICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVC 106

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 88.0 bits (218), Expect = 1e-21
 Identities = 27/126 (21%), Positives = 40/126 (31%), Gaps = 2/126 (1%)

Query: 27  KTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP 86
           KT+        +                  A     L     +Q  +   L C + G PP
Sbjct: 192 KTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPP 251

Query: 87  PTVKWYKGNREL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144
           P V W K  + L           +       I      DSG+Y  V  NK+G++ ++  V
Sbjct: 252 PEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTV 311

Query: 145 IVESEE 150
            V   E
Sbjct: 312 SVFIPE 317

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 79.6 bits (196), Expect = 2e-18
 Identities = 10/114 (8%), Positives = 30/114 (26%), Gaps = 11/114 (9%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLC----------CLSGKPPPTVKWYKGNRELSK-R 101
             E+       +  ++       K+                     V W      +    
Sbjct: 94  VDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSD 153

Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 155
                 +   + ++I +  P D G+Y     +     +    +  ++ +E+  +
Sbjct: 154 RVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAE 207

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 86.2 bits (213), Expect = 1e-22
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 15/118 (12%)

Query: 55  ESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKP---PPTVKWYKGN----------RELS 99
             +    F+ +P+   V+  +    +  +  +     PT+KW+KG               
Sbjct: 3   SGSSGILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQL 62

Query: 100 KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
           K  +          M+II  K   +G Y+C  T K   D  +  + V     +    +
Sbjct: 63  KETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTTPNID 120

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 88.1 bits (218), Expect = 2e-22
 Identities = 25/122 (20%), Positives = 51/122 (41%), Gaps = 5/122 (4%)

Query: 28  TIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPP 86
           T+       +++++    Q   W       P+F   L   V        L C ++  K  
Sbjct: 90  TVVLVGDVFKKLQKEAEFQRQEWIRK--QGPHFVEYLSWEVT-GECNVLLKCKVANIKKE 146

Query: 87  PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             + WYK  RE+   D    + DG+ ++ I +   +D+G Y+ +  +  G D++   ++ 
Sbjct: 147 THIVWYKDEREI-SVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 205

Query: 147 ES 148
           E+
Sbjct: 206 EA 207

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 87.3 bits (216), Expect = 4e-22
 Identities = 15/104 (14%), Positives = 37/104 (35%), Gaps = 6/104 (5%)

Query: 61  TFLLRPRVMQVR---QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSD--GVVSM 114
            F      +++    Q    +          V +    +E+     Y M      G++ M
Sbjct: 4   PFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEM 63

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQEL 158
            +   + ED G Y     +   T+ +  V++ +  ++ +++ E 
Sbjct: 64  FMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEF 107

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 91.4 bits (226), Expect = 3e-22
 Identities = 30/111 (27%), Positives = 50/111 (45%), Gaps = 3/111 (2%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
              AP  T  L  +   + ++ ++ C  SG PPP + W+K N  L + D  +   DG  +
Sbjct: 663 ERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVE-DSGIVLKDGNRN 721

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE--SKEQQELAHNF 162
           + I   + ED G Y C A +  G  +     I+E  +E  + E+    H+ 
Sbjct: 722 LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNLERTHHHHHH 772

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 73.6 bits (180), Expect = 5e-16
 Identities = 20/98 (20%), Positives = 37/98 (37%), Gaps = 7/98 (7%)

Query: 53  TVESAPNFTFLLR-PRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSD 109
            V   P   F      +++    +  ++     G PPP +KWYK    L       +   
Sbjct: 323 RVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGH- 381

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
               + I++    D+G Y  + TN    ++ + VV + 
Sbjct: 382 ---VLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLV 416

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 62.9 bits (152), Expect = 3e-12
 Identities = 16/93 (17%), Positives = 26/93 (27%), Gaps = 4/93 (4%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG--VVS 113
             P  +       ++   T ++ C   G+      W        +R      SDG    +
Sbjct: 30  DLPRLSIQKDILTIKANTTLQITC--RGQRDLDWLWPNNQSGSEQRVEVTECSDGLFCKT 87

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           + I      D+G YKC              V  
Sbjct: 88  LTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 62.5 bits (151), Expect = 4e-12
 Identities = 15/108 (13%), Positives = 30/108 (27%), Gaps = 11/108 (10%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK-------GNRELSKRDY 103
                             + V +   L C    +    + +          +++L  RD 
Sbjct: 218 VVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDL 277

Query: 104 SMS----YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
                      + ++ I      D G Y C A++   T + +  V V 
Sbjct: 278 KTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 58.6 bits (141), Expect = 9e-11
 Identities = 17/122 (13%), Positives = 36/122 (29%), Gaps = 22/122 (18%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS-------- 104
            V   P  T     +    +++  L C         + WYK   +               
Sbjct: 546 HVTRGPEITLQPDMQPT-EQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCK 604

Query: 105 -------------MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
                         + ++ ++ ME+ +   +D G+Y C+A ++        V  +   E 
Sbjct: 605 NLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLER 664

Query: 152 SK 153
             
Sbjct: 665 VA 666

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 53.6 bits (128), Expect = 4e-09
 Identities = 23/134 (17%), Positives = 33/134 (24%), Gaps = 38/134 (28%)

Query: 53  TVESAPNF---TFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNREL---------- 98
            V   P     + +      Q   T  L C +   PPP  + WY    E           
Sbjct: 416 VVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVS 475

Query: 99  ------------------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134
                                   +K  +++          ++      S  YKC A NK
Sbjct: 476 VTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNK 535

Query: 135 HGTDETNCVVIVES 148
            G  E      V  
Sbjct: 536 VGRGERVISFHVTR 549

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 52.1 bits (124), Expect = 1e-08
 Identities = 10/81 (12%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 73  QTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA 131
           +T  + C  S      ++      +        +S+ D      I       +G   C A
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCEA 202

Query: 132 TNKHGTDETNCVVIVESEEES 152
                + ++   ++V      
Sbjct: 203 KINDESYQSIMYIVVVVGYRI 223

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 89.3 bits (221), Expect = 4e-22
 Identities = 22/119 (18%), Positives = 50/119 (42%), Gaps = 3/119 (2%)

Query: 31  AYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTV 89
             +      + ++  +    +   +  P+F   L   V        L C ++  K    +
Sbjct: 196 VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVT-GECNVLLKCKVANIKKETHI 254

Query: 90  KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            WYK  RE+S  +    + DG+ ++ I +   +D+G Y+ +  +  G D++   ++ E+
Sbjct: 255 VWYKDEREISVDEK-HDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEA 312

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 87.4 bits (216), Expect = 2e-21
 Identities = 15/119 (12%), Positives = 40/119 (33%), Gaps = 3/119 (2%)

Query: 46  QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---SKRD 102
            +    E           L   +++  Q    +          V +    +E+    K  
Sbjct: 97  LLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYK 156

Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHN 161
             +  + G++ M +   + ED G Y     +   T+ +  V++ +  ++ +++ E    
Sbjct: 157 MHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQ 215

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 77.3 bits (190), Expect = 1e-17
 Identities = 15/102 (14%), Positives = 24/102 (23%), Gaps = 2/102 (1%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSME 115
            P    ++         +    C     P     W K            +        M 
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVESKGNKTKMT 61

Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
             D   +D G Y C  T+  G   +  +   E +       E
Sbjct: 62  FKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHE 103

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 87.6 bits (217), Expect = 4e-22
 Identities = 26/108 (24%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 52  ETVESAPNFT--FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSM 105
              + AP +T    +  R+  V    T K  C   G P PT++W K  +E     R    
Sbjct: 10  SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGY 69

Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
              +   S+ +    P D G Y CV  N++G+      + V      +
Sbjct: 70  KVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHR 117

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 65.3 bits (159), Expect = 1e-13
 Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 12/112 (10%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR------------DYSM 105
                L       V    + +C +     P ++W K   +   +             +S 
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178

Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
             S     + + +    D+GEY C  +N  G    +  + V  ++++  +++
Sbjct: 179 INSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQAPGREK 230

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 90.2 bits (224), Expect = 7e-22
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 1/97 (1%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGV 111
            V+  P F     P          L C L G PP  V W+K  REL     Y +   + +
Sbjct: 380 KVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFL 439

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            S+ I++    D GEY+C A+N  G+D     + +++
Sbjct: 440 TSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKA 476

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 89.5 bits (222), Expect = 1e-21
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 1/96 (1%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSME 115
            P F   L      + +   L C + G P   + WYK + +L S   Y M + + V S+ 
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
           I      D GEY C A N  G   ++ V++++  + 
Sbjct: 65  INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKL 100

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 89.5 bits (222), Expect = 1e-21
 Identities = 24/96 (25%), Positives = 47/96 (48%), Gaps = 2/96 (2%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDG 110
           T+++ P F   L      V +  +L   + G  P +V W+K   E+ +   +  +SYS+ 
Sbjct: 473 TLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSEN 532

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           + +++    +P ++G+Y C   N+ GT E    + V
Sbjct: 533 IATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 87.9 bits (218), Expect = 4e-21
 Identities = 25/114 (21%), Positives = 44/114 (38%), Gaps = 5/114 (4%)

Query: 38  QVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE 97
            V     L I    +  +  P+F   L+     +       C ++G  P  V WYK    
Sbjct: 86  AVASSAVLVI----KERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGEL 141

Query: 98  LS-KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
           L    +   S+   V +++I+       G+Y C A+N  GT  ++  + +   E
Sbjct: 142 LKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHE 195

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 87.6 bits (217), Expect = 6e-21
 Identities = 28/98 (28%), Positives = 49/98 (50%), Gaps = 2/98 (2%)

Query: 53  TVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDG 110
            V+  P F   L P R+++  +  +  C + G P   V WYK   E+ +   + MS+ + 
Sbjct: 286 GVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVES 345

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           V  +E+ +   EDSG+Y C A N  G+  ++  + V+ 
Sbjct: 346 VAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKE 383

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 84.1 bits (208), Expect = 1e-19
 Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 1/95 (1%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVS 113
           E  P F        + + ++    C ++G  P  + W K NRE+    +Y M+  +   +
Sbjct: 195 EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTAT 254

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           + ++     D+G+Y C A+N  G D  +  + V+ 
Sbjct: 255 LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQE 289

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 83.5 bits (207), Expect = 8e-22
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVS 113
                F   L+   +       L C LS    P VKW  GN  L     YS+     ++ 
Sbjct: 6   SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLE 64

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
           + + + +P+DSG Y C      G   T+  + V +   
Sbjct: 65  LVVRNLRPQDSGRYSCSF----GDQTTSATLTVTALPS 98

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 89.9 bits (223), Expect = 9e-22
 Identities = 33/138 (23%), Positives = 57/138 (41%), Gaps = 6/138 (4%)

Query: 15  QDNPRLRTRAIPKTIPA-----YVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVM 69
           +D+ + +  A P+ +P          +++ R +E      + +  E+ P F        +
Sbjct: 435 RDSIKTKYDAWPEPLPPLGRISNYSSLRKHRPQEYSIRDAFWDRSEAQPRFIVKPYGTEV 494

Query: 70  QVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYK 128
              Q+    C +    PP V W+K +REL +   Y   Y+     + I   K +D GEY 
Sbjct: 495 GEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYT 554

Query: 129 CVATNKHGTDETNCVVIV 146
             A N +GT E    + V
Sbjct: 555 VRAKNSYGTKEEIVFLNV 572

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 87.9 bits (218), Expect = 1e-21
 Identities = 26/95 (27%), Positives = 44/95 (46%), Gaps = 3/95 (3%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSD-GVV 112
            AP+F   LR   ++ +    L+C ++G P P VKWY+  +E+      Y +     G  
Sbjct: 3   MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYH 62

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            + I     +D+  Y+  ATN+ G+      + VE
Sbjct: 63  QLIIASVTDDDATVYQVRATNQGGSVSGTASLEVE 97

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 77.5 bits (191), Expect = 8e-18
 Identities = 21/101 (20%), Positives = 37/101 (36%), Gaps = 7/101 (6%)

Query: 53  TVESAPNFT---FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMS 106
            VE          L     +     +   +    SGKP P + W KG   + +   Y + 
Sbjct: 95  EVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVI 154

Query: 107 YSDGVVSMEIIDC-KPEDSGEYKCVATNKHGTDETNCVVIV 146
            +    S+   +  + +D+G Y   A N+ G D+    + V
Sbjct: 155 VTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 81.2 bits (201), Expect = 6e-21
 Identities = 22/97 (22%), Positives = 35/97 (36%), Gaps = 6/97 (6%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVS 113
             A  FT  L    ++ + T    C     P  TV W KG  EL +   +  S     + 
Sbjct: 6   SGANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQEGLTLR 64

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
           + I   +  DS  Y C      G  ++   ++V+   
Sbjct: 65  LTISALEKADSDTYTCDI----GQAQSRAQLLVQGRR 97

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 85.4 bits (211), Expect = 1e-20
 Identities = 25/109 (22%), Positives = 40/109 (36%), Gaps = 6/109 (5%)

Query: 51  QETVESAPNFT--FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYS 104
                 AP +T    +  +++ V    T +  C  +G P P++ W K  RE     R   
Sbjct: 113 TGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGG 172

Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
           +       S+ +    P D G Y CV  NK G+      + V      +
Sbjct: 173 IKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHR 221

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 64.3 bits (156), Expect = 7e-13
 Identities = 16/106 (15%), Positives = 30/106 (28%), Gaps = 7/106 (6%)

Query: 54  VESAPNFTFLLRPRVMQVR--QTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
               P      +   +        +L C    G P     W K    L   +       G
Sbjct: 4   AAEVPGP-EPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSER---VLVG 59

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQ 156
              +++++   EDSG Y C             V + ++     ++ 
Sbjct: 60  PQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDED 105

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 62.3 bits (151), Expect = 3e-12
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 17/117 (14%)

Query: 55  ESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRE--------------L 98
                      P           +  C +     P ++W K                  +
Sbjct: 218 SPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTV 277

Query: 99  SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV-ESEEESKE 154
            K   + +    +  + + +   ED+GEY C+A N  G    +  ++V  +EEE  E
Sbjct: 278 LKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 81.0 bits (200), Expect = 1e-20
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
           TV   P    L  P   ++R    +   + G PPPT+ W    + L  SK  +   Y +G
Sbjct: 4   TVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 60

Query: 111 VVSM---EIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            +S            ++G Y  +A N  GT         
Sbjct: 61  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 79.7 bits (197), Expect = 2e-20
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 6/94 (6%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVS 113
                    L  + +   +  +L C LS    P V W K  + + K + Y +     +  
Sbjct: 6   SGPAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVCEGTMAM 64

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           + I     +D+GEY C       T      + VE
Sbjct: 65  LVIRGASLKDAGEYTCEVEASKST----ASLHVE 94

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 79.8 bits (197), Expect = 3e-20
 Identities = 20/101 (19%), Positives = 41/101 (40%), Gaps = 9/101 (8%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY------SMSY 107
           V  AP  TFL  P          +   + G P P ++W+     L++  Y        ++
Sbjct: 1   VHFAPTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           ++    +++ +    ++G+Y  +A N++G DE         
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHFMG 98

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 79.7 bits (197), Expect = 3e-20
 Identities = 25/98 (25%), Positives = 36/98 (36%), Gaps = 7/98 (7%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSD 109
                    FT  L+ +      T  L C LS      V+W KG   L     YS+    
Sbjct: 2   SSGSSGPARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQDG 59

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
               ++I D    D+GEY C+     G + T+  + V 
Sbjct: 60  TRCELQIHDLSVADAGEYSCMC----GQERTSATLTVR 93

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 79.7 bits (196), Expect = 3e-20
 Identities = 24/104 (23%), Positives = 41/104 (39%), Gaps = 15/104 (14%)

Query: 58  PNFTFLLRPRVMQVR--QTCKLLCCLSGKP---PPTVKWYKGN----------RELSKRD 102
           P   F++RP+  +V    +      ++G     PP VKW+KG                  
Sbjct: 3   PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           Y  +    +  + I D +P  +G Y+C  + K   D +N  + V
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTV 106

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 83.7 bits (207), Expect = 4e-20
 Identities = 25/106 (23%), Positives = 45/106 (42%), Gaps = 3/106 (2%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG 110
           ET E  P F    + ++         +C  +G P P V W K  +++ S+R  ++ + + 
Sbjct: 1   ETGEEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60

Query: 111 VVSMEIID--CKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE 154
             ++  I     P D   Y+CVA N  G    +  + V  E++   
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPS 106

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 76.0 bits (187), Expect = 3e-17
 Identities = 26/94 (27%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM 114
             AP F+ L     +       + C   G P P VKW +G  +L+  D  M     V   
Sbjct: 203 NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDD-MPVGRNV--- 258

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            +     +DS  Y CVA +  G  E    + V+S
Sbjct: 259 -LELTDVKDSANYTCVAMSSLGVIEAVAQITVKS 291

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 74.5 bits (183), Expect = 1e-16
 Identities = 23/97 (23%), Positives = 41/97 (42%), Gaps = 1/97 (1%)

Query: 45  LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDY 103
           L +    +     PN     + +V++  +T  +LC  SG P P + W+K    +      
Sbjct: 96  LTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASN 155

Query: 104 SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140
                    +++I   +  D G+Y+CVATN  G   +
Sbjct: 156 GRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYS 192

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 83.3 bits (206), Expect = 6e-20
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 6/107 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSD 109
            V   P  +   +         +     C  SG P P + W++  + + +   Y +  S+
Sbjct: 188 IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 247

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQ 156
               + + +    D G Y C ATNK G DE    + V   +      
Sbjct: 248 T--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF-VQHHHHHH 291

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 74.1 bits (182), Expect = 1e-16
 Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 1/95 (1%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
            +     F  ++ P+  +  +  +++C +S  P P V W   N E++    +        
Sbjct: 94  EIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN 153

Query: 113 SMEIIDCKPEDSGEYKCVATNK-HGTDETNCVVIV 146
           +++I++    D G Y+C    +  G  +   ++++
Sbjct: 154 NLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 188

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 67.1 bits (164), Expect = 4e-14
 Identities = 21/93 (22%), Positives = 35/93 (37%), Gaps = 3/93 (3%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDGVVS 113
           +    T  L    + V ++    C   G+P     WY    E   S +   +        
Sbjct: 3   ALLQVTISLSKVELSVGESKFFTCTAIGEPESID-WYNPQGEKIISTQRVVVQKEGVRSR 61

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           + I +   ED+G Y+C AT+  G  +   VV+ 
Sbjct: 62  LTIYNANIEDAGIYRCQATDAKGQTQEATVVLE 94

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 78.9 bits (195), Expect = 6e-20
 Identities = 26/95 (27%), Positives = 39/95 (41%), Gaps = 7/95 (7%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVV 112
                 FT  LR        T  L C LS   P  V+W+KG+  L     +S+       
Sbjct: 16  RALPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQDGARC 73

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            ++I     ED+GEY C+     G + T+ ++ V 
Sbjct: 74  ELQIRGLVAEDAGEYLCMC----GKERTSAMLTVR 104

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 82.3 bits (203), Expect = 6e-20
 Identities = 25/107 (23%), Positives = 40/107 (37%), Gaps = 6/107 (5%)

Query: 53  TVESAPNFT--FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMS 106
               AP +T    +  +++ V    T +  C  +G P P++ W K  RE     R   + 
Sbjct: 7   VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIK 66

Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
                 S+ +    P D G Y CV  NK G+      + V      +
Sbjct: 67  LRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHR 113

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 64.6 bits (157), Expect = 2e-13
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 13/114 (11%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-------------R 101
                   L   +   +    +  C +     P ++W K                    +
Sbjct: 112 HRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLK 171

Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 155
            +     +  V + + +    D GEY C ATN  G  E    + V     ++E+
Sbjct: 172 SWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAAEEE 225

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 81.0 bits (200), Expect = 1e-19
 Identities = 29/102 (28%), Positives = 46/102 (45%), Gaps = 2/102 (1%)

Query: 45  LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS 104
           L I    +T    P  T     RV++V  T  + C   G P P + W K   ++   +  
Sbjct: 98  LTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPR 157

Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            S  DG   ++I + + ED G+Y+CVA N  GT+ +    + 
Sbjct: 158 YSLKDG--FLQIENSREEDQGKYECVAENSMGTEHSKATNLY 197

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 79.1 bits (195), Expect = 6e-19
 Identities = 23/109 (21%), Positives = 44/109 (40%), Gaps = 5/109 (4%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSD 109
           ET    P      + + ++V       C   G PPP++ W K  +++S     Y++    
Sbjct: 1   ETGAHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQP 60

Query: 110 GVVSMEIID--CKPEDSGEYKCVATNKHGTD-ETNCVVIVESEEESKEQ 155
           G +S+  I+      D   Y+CVA N  G     +  + +   +++   
Sbjct: 61  GGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAG 109

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 80.2 bits (198), Expect = 1e-19
 Identities = 22/97 (22%), Positives = 36/97 (37%), Gaps = 5/97 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSD 109
            V   P  +   +         +     C  SG P P + W++  + +     Y +  S+
Sbjct: 92  IVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSN 151

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
               + + +    D G Y C ATNK G DE    + V
Sbjct: 152 T--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 70.2 bits (172), Expect = 8e-16
 Identities = 18/92 (19%), Positives = 39/92 (42%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME 115
           S   F  ++ P+  +  +  +++C +S  P P V W   N E++    +        +++
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ 60

Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           I++    D G Y+C    +   +     +IV 
Sbjct: 61  ILNINKSDEGIYRCEGRVEARGEIDFRDIIVI 92

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 77.4 bits (191), Expect = 1e-19
 Identities = 21/98 (21%), Positives = 41/98 (41%), Gaps = 6/98 (6%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSM 114
           S+ +    +   ++      +L C L      ++ W +   +L++ +   ++       +
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLAESNRTRITGE----EV 56

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
           E+ D  P DSG Y CV ++  G+D T   V V     S
Sbjct: 57  EVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDALPS 94

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 76.7 bits (189), Expect = 4e-19
 Identities = 18/102 (17%), Positives = 35/102 (34%), Gaps = 4/102 (3%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
                      +    ++  +     C +S     T KWYK   E+   +  ++S+    
Sbjct: 4   GSSGQLEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITISHVGRF 62

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
             + I D +PED G+Y  V      +   +  +     + S 
Sbjct: 63  HKLVIDDVRPEDEGDYTFVPDGYALS--LSAKLNFLEIKVSG 102

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 78.6 bits (194), Expect = 5e-19
 Identities = 21/95 (22%), Positives = 34/95 (35%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
           E +  AP  T  L      V +    +C +   P P + W +    +   D   S  +  
Sbjct: 2   EKLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENG 61

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             + I+  +  D G Y C A N  G    +C  + 
Sbjct: 62  QLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQ 96

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 78.2 bits (193), Expect = 9e-19
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 2/91 (2%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
            V+  P  T       +       L C   G P P+V W KG+  L +         G  
Sbjct: 96  QVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESG-- 153

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143
           S+ I + + ED+G+Y+CVA N  GT  +  V
Sbjct: 154 SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLV 184

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 81.9 bits (202), Expect = 5e-19
 Identities = 20/99 (20%), Positives = 36/99 (36%), Gaps = 9/99 (9%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
           TV +  +       + +   +     C  +G P  TV W K  + +         S+ V 
Sbjct: 339 TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-------SESV- 390

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
            + I   K ED G Y+C   N   + E +  + +    +
Sbjct: 391 -LRIESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFD 428

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 79.6 bits (196), Expect = 5e-18
 Identities = 22/103 (21%), Positives = 35/103 (33%), Gaps = 6/103 (5%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK------RDYSM 105
                 P      +   M+   +  L C   G P P + W    ++++         Y  
Sbjct: 424 GGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVT 483

Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
              D V  + I      D G YKC+A +K G  E +  + V  
Sbjct: 484 VNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYG 526

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 78.8 bits (194), Expect = 8e-18
 Identities = 19/98 (19%), Positives = 35/98 (35%), Gaps = 4/98 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
            V   P +      +        K+ C   G P P V W K   +       +  SD + 
Sbjct: 710 NVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIR 769

Query: 113 ----SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
               ++ + + +  + G Y C A N  G+  +  ++I 
Sbjct: 770 VEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMIS 807

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 78.4 bits (193), Expect = 1e-17
 Identities = 25/107 (23%), Positives = 41/107 (38%), Gaps = 5/107 (4%)

Query: 47  ITFWQETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS 104
           +   +    + P    L +  +       T  LLC   G P P  +WYK     +++   
Sbjct: 236 LVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAV 295

Query: 105 MSYSDGVV---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           +          ++ I D   EDSG+Y CV  N  G +    V+ V +
Sbjct: 296 VLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTA 342

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 73.8 bits (181), Expect = 5e-16
 Identities = 18/100 (18%), Positives = 29/100 (29%), Gaps = 4/100 (4%)

Query: 53  TVESAPNF-TFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNREL--SKRDYSMSYS 108
            V   P    F       QV Q   L C + G   P  + W    + +       +    
Sbjct: 614 QVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVG 673

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
                + I   +   +G + C A N  G  +    + V  
Sbjct: 674 RRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYV 713

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 66.1 bits (161), Expect = 2e-13
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 7/105 (6%)

Query: 52  ETVESAPNFTFLLRPRV-MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
           +  +  P F      R+        ++ C  SG P P + W + +         +     
Sbjct: 33  DADQKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISS 92

Query: 111 VVSMEIIDCKPED------SGEYKCVATNKHGTDETNCVVIVESE 149
              +     + ED      +  Y C+A N+ G+  +  V +    
Sbjct: 93  DGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVV 137

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 64.6 bits (157), Expect = 7e-13
 Identities = 21/98 (21%), Positives = 40/98 (40%), Gaps = 5/98 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
            V   P     +  + +   +T  + C ++G P  ++ W + NR L        + +G  
Sbjct: 523 NVYGLPYIR-QMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNG-- 579

Query: 113 SMEIID-CKPEDSGEYKCVATNKHG-TDETNCVVIVES 148
           ++ I +  +  D   Y CVA N+ G +   +  V V  
Sbjct: 580 TLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 50.3 bits (120), Expect = 5e-08
 Identities = 12/96 (12%), Positives = 25/96 (26%), Gaps = 11/96 (11%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCL---SGKPPPTVKWYKGNRELSKRDYSMS--- 106
               A  +   +    +    +  + C +          V W+    E            
Sbjct: 134 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKY 193

Query: 107 --YSDGVVSMEIIDCKPEDS-GEYKCVATNKHGTDE 139
                G   + I +  PED    Y+C   ++   + 
Sbjct: 194 LVLPSG--ELHIREVGPEDGYKSYQCRTKHRLTGET 227

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 4/37 (10%), Positives = 12/37 (32%)

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
           M + + + +    +  VA    G+           ++
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQK 37

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 76.2 bits (188), Expect = 6e-19
 Identities = 19/99 (19%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGV 111
            S    T  L        +  +L C +S      VKW+K   E+    K  Y +      
Sbjct: 5   SSGIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKK 63

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
             + I      D+ EY  + T      +++  + V+ + 
Sbjct: 64  HILIIEGATKADAAEYSVMTTG----GQSSAKLSVDLKS 98

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 75.5 bits (186), Expect = 2e-18
 Identities = 14/98 (14%), Positives = 27/98 (27%), Gaps = 6/98 (6%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDG-VV 112
               +    L    +Q   +    C +S      V W+     L +     +    G   
Sbjct: 11  GRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYH 70

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
            + +     +DSG     A    G    +  + V  + 
Sbjct: 71  VLTLRQLALKDSGTIYFEA----GDQRASAALRVTEKP 104

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 75.1 bits (185), Expect = 2e-18
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 5/95 (5%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVS 113
            S       L  + + + +   L C +S   P   KW K    + +     +     +  
Sbjct: 5   SSGLKILTPLTDQTVNLGKEICLKCEISENIP--GKWTKNGLPVQESDRLKVVQKGRIHK 62

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           + I +   ED G+Y                V V S
Sbjct: 63  LVIANALTEDEGDYVFAPDA--YNVTLPAKVHVIS 95

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 74.7 bits (184), Expect = 2e-18
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 3/93 (3%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSM 114
             P        + + V  T  L C  +G P P + W K       RD  +     G  ++
Sbjct: 7   GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG--TL 64

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           +I + +  D+G Y CVAT+  G    + V+ V 
Sbjct: 65  QIKNLRISDTGTYTCVATSSSGETSWSAVLDVT 97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 74.7 bits (184), Expect = 2e-18
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 7/96 (7%)

Query: 55  ESAPNFTFLLRPRVM-QVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVV 112
            S   F  +L P          + +  L+  P   VKWYK  +E+     Y   +     
Sbjct: 5   SSGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQR 63

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            + I +C+  D  EY   A    G ++ +  + V S
Sbjct: 64  ILFINNCQMTDDSEYYVTA----GDEKCSTELFVRS 95

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 79.9 bits (197), Expect = 2e-18
 Identities = 26/96 (27%), Positives = 47/96 (48%), Gaps = 3/96 (3%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
            + + P++  ++      +    +  C  SGKP P V+W +  + L+ ++  +  S G  
Sbjct: 290 IIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNR-IEVSGG-- 346

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            +       EDSG Y+CVA NKHGT   +  + V++
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQA 382

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 68.7 bits (168), Expect = 2e-14
 Identities = 24/118 (20%), Positives = 41/118 (34%), Gaps = 7/118 (5%)

Query: 33  VPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVK 90
           +  + +    +  Q++   E             P        Q   L C   G P P +K
Sbjct: 181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIK 240

Query: 91  WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           W K +   + +      S+    + I +   ED G Y+C A N  G D     +I+ +
Sbjct: 241 WRKLDGSQTSK---WLSSEP--LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHA 293

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 57.9 bits (140), Expect = 1e-10
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 4/78 (5%)

Query: 71  VRQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGVVSMEIID-CKPEDSGEYK 128
             +   L C     PP T +W     EL    D       G   + I +  K +D+G Y+
Sbjct: 21  AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQ 78

Query: 129 CVATNKHGTDETNCVVIV 146
           CVATN  GT  +    + 
Sbjct: 79  CVATNARGTVVSREASLR 96

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 48.7 bits (116), Expect = 2e-07
 Identities = 13/95 (13%), Positives = 25/95 (26%), Gaps = 9/95 (9%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYS---MS 106
                  F        +++         C      P  + +W                +S
Sbjct: 96  RFGFLQEF-SAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS 154

Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
            + G  ++ I   +  D G Y C AT+       +
Sbjct: 155 QTTG--NLYIAKTEASDLGNYSCFATSHIDFITKS 187

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 79.9 bits (197), Expect = 2e-18
 Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 3/97 (3%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
           T  + PN+  ++    + + ++    C  +G+P PT +W K    L  RD  +    G  
Sbjct: 291 TFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDR-IQIEQG-- 347

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
           ++ I      D+G Y+CVA NKHG   ++  + V +E
Sbjct: 348 TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIAE 384

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 73.7 bits (181), Expect = 3e-16
 Identities = 28/107 (26%), Positives = 44/107 (41%), Gaps = 5/107 (4%)

Query: 44  PLQITFWQETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKR 101
           PL +       E  P    +  P  +      T KL C   G P PT+ W + + +   R
Sbjct: 191 PLILRNDGVMGEYEPKI-EVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIAR 249

Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
                 S+G   +EI + + ED+G Y+CVA N  G +     +   +
Sbjct: 250 KARRHKSNG--ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYA 294

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 60.2 bits (146), Expect = 2e-11
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 7/91 (7%)

Query: 56  SAPNFTFLLRPRVMQV---RQTCKLLCCLSGKPPPTVKWYKGNRELS-KRDYSMSYSDGV 111
           S P F       +  +    +  KL C + G P P ++W     ++    D+  S  DG 
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYSVVDG- 62

Query: 112 VSMEIID-CKPEDSGEYKCVATNKHGTDETN 141
            S+ I +  K +D+G Y+C+ATN  GT  + 
Sbjct: 63  -SLLINNPNKTQDAGTYQCIATNSFGTIVSR 92

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 52.1 bits (125), Expect = 1e-08
 Identities = 19/91 (20%), Positives = 28/91 (30%), Gaps = 7/91 (7%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCL-SGKPPPTVKWYKGNRELSKRD-YSMSYS 108
                 NF        + VR  Q   LLC         +  W        + +   +S  
Sbjct: 97  QFAYLENF-KTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQE 155

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
            G  ++ I   +  D G Y CV TN     +
Sbjct: 156 TG--NLYIAKVEKSDVGNYTCVVTNTVTNHK 184

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 74.3 bits (183), Expect = 3e-18
 Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 10/101 (9%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-----YSMSYSD 109
                    L  + + V    ++   +S +    V W K   EL++ D     Y      
Sbjct: 6   SGPVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDG 64

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
               +   D   ED G Y+ +        +    +IVE ++
Sbjct: 65  KRHILIFSDVVQEDRGRYQVITNG----GQCEAELIVEEKQ 101

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 74.3 bits (183), Expect = 3e-18
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYS 108
             + +  F   L P   QV      +L   L+      VKW K  +E+  S   Y     
Sbjct: 11  DEKKSTAFQKKLEP-AYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESI 68

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
               ++ I  C   D   Y+CV     G ++ +  + V+
Sbjct: 69  GAKRTLTISQCSLADDAAYQCVV----GGEKCSTELFVK 103

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 76.0 bits (187), Expect = 4e-18
 Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 7/101 (6%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL------SKRDYSMS 106
            V++AP+ T   R       Q   + C   G P P   W K    +      S   + + 
Sbjct: 88  EVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFII 147

Query: 107 YSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETNCVVIV 146
             +    + I++ +  ED GEY+C ATN  G+   + V+ V
Sbjct: 148 NKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 61.0 bits (148), Expect = 3e-12
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 7/95 (7%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDYSMSYSDGVVS 113
           + P         +        L C L+          W K   EL+    + S       
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASNM----E 57

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
             I   + EDSGEY CV  +     + N  + V++
Sbjct: 58  YRINKPRAEDSGEYHCVY-HFVSAPKANATIEVKA 91

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 78.7 bits (194), Expect = 6e-18
 Identities = 27/95 (28%), Positives = 39/95 (41%), Gaps = 2/95 (2%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
           TV   P F               +  C +SGKP PTV W K    +   DY         
Sbjct: 308 TVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVGGS-- 365

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           ++ I+     D G Y+CVA N+ G  +++  +IV 
Sbjct: 366 NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 74.5 bits (183), Expect = 2e-16
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 53  TVESAPN----FTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSM 105
            + S P       FL RP  +     +   L CC+SG PPP+  W +G   +  R     
Sbjct: 211 RILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYS 270

Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
                  ++ I +   +DSG Y CV T K+     +  + V  
Sbjct: 271 LLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLV 311

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 72.9 bits (179), Expect = 7e-16
 Identities = 26/101 (25%), Positives = 39/101 (38%), Gaps = 6/101 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY---SD 109
            V     F          +  T  L C + G P PT+ W K  ++L+             
Sbjct: 117 MVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVVLPS 176

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV-VIVESE 149
           G  +++I   +P DSG Y+C A N   T   N   V + S+
Sbjct: 177 G--ALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSD 215

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 58.3 bits (141), Expect = 9e-11
 Identities = 17/100 (17%), Positives = 27/100 (27%), Gaps = 6/100 (6%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNREL--SKRDYSMSYSD 109
               + +F       V        L C        P +KW K    L     D      +
Sbjct: 17  GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQLPN 76

Query: 110 G---VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           G   + ++        D G Y+C A+        +    V
Sbjct: 77  GSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKV 116

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 74.3 bits (182), Expect = 7e-18
 Identities = 17/109 (15%), Positives = 34/109 (31%), Gaps = 14/109 (12%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK----------- 100
                   F      +   V  + +L C   G P P ++W+   +  +            
Sbjct: 16  PRGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARL 75

Query: 101 ---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                ++  +     ++ I     ED+G Y+C A+N    +       V
Sbjct: 76  DRVHIHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLTRAPRV 124

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 75.6 bits (186), Expect = 1e-17
 Identities = 16/99 (16%), Positives = 34/99 (34%), Gaps = 8/99 (8%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSY 107
           +   AP       P  +         + C +   P  T+ W++  + L   +     +  
Sbjct: 15  SHMYAPKLQG---PVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN 71

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           +     +E+      D G Y C A N+ G +    +++ 
Sbjct: 72  TPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 72.9 bits (179), Expect = 1e-17
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 3/94 (3%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMS-YSDGVVSM 114
             P        + + V  T  L C  +G P PT+ W K    +S +D  +    +G   +
Sbjct: 7   GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQLENG--VL 64

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           +I   K  D+G Y C+A+   G    +  + V+ 
Sbjct: 65  QIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQE 98

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 76.8 bits (189), Expect = 3e-17
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 3/97 (3%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSD 109
            +E AP F                + C +   PP ++ W +    L  ++        + 
Sbjct: 96  DIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYSTG 155

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             + +EI      D G Y C ATN  GT     ++ +
Sbjct: 156 RKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL 192

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 73.3 bits (180), Expect = 4e-16
 Identities = 21/98 (21%), Positives = 38/98 (38%), Gaps = 15/98 (15%)

Query: 65  RPRVMQVR-------QTCKLLCCLSGKPPPTVKWYKGNREL--------SKRDYSMSYSD 109
           +P ++Q++           L+C   G+P P + W +                   +    
Sbjct: 1   QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQH 60

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           G  S+ I D K  DSG Y C A ++ G  + +  + +E
Sbjct: 61  GSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIE 98

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 76.4 bits (188), Expect = 3e-17
 Identities = 21/98 (21%), Positives = 42/98 (42%), Gaps = 4/98 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
            V++AP +    +  ++   +  +L+C  +G P PTV+W      L  +  + +   +  
Sbjct: 308 RVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEPLQSAPPNPNREVAGD 367

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
             ++   D +      Y+C  +N+HG    N  V V  
Sbjct: 368 --TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD 403

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 75.3 bits (185), Expect = 9e-17
 Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 5/108 (4%)

Query: 44  PLQITFWQETVESAPNFTFLLR-PRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSK 100
            L++   +   E  P+F +         V       L C  SG P P + WYK   +L  
Sbjct: 206 TLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPS 265

Query: 101 RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
                   +   ++ I +   EDSGEY C+A+NK G+      V V++
Sbjct: 266 DKAKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKA 311

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 65.3 bits (159), Expect = 3e-13
 Identities = 24/99 (24%), Positives = 38/99 (38%), Gaps = 6/99 (6%)

Query: 53  TVESAPNFTF-LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYS 108
            +   P  T    +  ++  R    + C   G P P+  W + +R  +       SM   
Sbjct: 12  ELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRR 71

Query: 109 DG--VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
            G  V+         E  GEY+C A NK GT  +N + +
Sbjct: 72  SGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRL 110

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 23/116 (19%), Positives = 39/116 (33%), Gaps = 6/116 (5%)

Query: 53  TVESAPNF-TFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMS-YSD 109
            V  +P +    L P V+Q      L C    G P P + W   + E   +D  +S   +
Sbjct: 111 QVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHN 170

Query: 110 GVVSMEIIDCKPEDS-GEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLY 164
           G   +   +   +D   +Y C A                    ++   E   +F+Y
Sbjct: 171 G--DLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMY 224

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 71.3 bits (175), Expect = 4e-17
 Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 6/93 (6%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEI 116
                  R    +   +  L C ++      V WYK  ++LS      +        + +
Sbjct: 12  AKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVV 70

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
                 ++GEY C A    G  + +  + V  +
Sbjct: 71  QQAGQAEAGEYSCEA----GGQQLSFRLQVAGQ 99

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 74.2 bits (182), Expect = 4e-17
 Identities = 26/109 (23%), Positives = 40/109 (36%), Gaps = 13/109 (11%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNREL----------SKR 101
            V   P+   +  P    +     L C    G PP    W+K    +          S  
Sbjct: 103 IVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNS 162

Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
            Y ++ + G   +        D+GEY C A N +GT  T+  V +E+ E
Sbjct: 163 SYVLNPTTG--ELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 61.1 bits (148), Expect = 3e-12
 Identities = 20/101 (19%), Positives = 34/101 (33%), Gaps = 11/101 (10%)

Query: 58  PNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELS-----KRDYSMSYSDG 110
            + T       +++      KL C  SG   P V+W     + +         + SY D 
Sbjct: 3   GSVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDR 62

Query: 111 VV----SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           V      +       ED+G Y C+ + + G       V + 
Sbjct: 63  VTFLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLI 103

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 75.7 bits (186), Expect = 7e-17
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVR-QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
           TV SAP +       ++  + Q   + C ++G P P V W    + LS    +++ S   
Sbjct: 304 TVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS--- 360

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             + I   K  D G Y C ATN+HG      +V V
Sbjct: 361 -GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 71.5 bits (175), Expect = 2e-15
 Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 1/95 (1%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGV 111
            V+  P         + +      L C + G        W K  +  + ++++ +     
Sbjct: 2   PVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDE 61

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            S+  +  +  D G Y+C A    G   +  +   
Sbjct: 62  GSLVFLRPQASDEGHYQCFAETPAGVASSRVISFR 96

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 71.1 bits (174), Expect = 2e-15
 Identities = 14/100 (14%), Positives = 32/100 (32%), Gaps = 4/100 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSYSD 109
             +  P   ++ +  + +      + C     P     ++K  +++    +   +     
Sbjct: 208 GYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRT 267

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETN-CVVIVES 148
               +      PED G Y C   N  G  + +   + V S
Sbjct: 268 SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVS 307

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 14/103 (13%), Positives = 25/103 (24%), Gaps = 9/103 (8%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
                         +     +  +L C L +  P P + W K             +   +
Sbjct: 96  RKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRI 155

Query: 112 VSME--------IIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            +          +      D  +Y C A N    +E   V   
Sbjct: 156 TAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYE 198

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 70.9 bits (174), Expect = 7e-17
 Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 4/86 (4%)

Query: 56  SAPNFTFLLRPRVMQVR--QTCKLLCCLS-GKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
           S+ +     R + M+V   ++C   C LS         W  G + + S   +  +     
Sbjct: 5   SSGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRK 64

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGT 137
             + + +  P D+GE           
Sbjct: 65  YILVVREAAPSDAGEVVFSVRGLTSK 90

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 73.4 bits (180), Expect = 9e-17
 Identities = 19/109 (17%), Positives = 29/109 (26%), Gaps = 8/109 (7%)

Query: 38  QVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE 97
            V               ES          + +    T  L C   G P P  +W+K    
Sbjct: 99  DVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELP 158

Query: 98  LSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           L+                +     E  G Y C   N   + ++  V I+
Sbjct: 159 LTHETKK--------LYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEII 199

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 68.4 bits (167), Expect = 6e-15
 Identities = 20/95 (21%), Positives = 33/95 (34%), Gaps = 12/95 (12%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
            V      T  + P    V   Q  KL C  +G P    +W+K N+E+   + S      
Sbjct: 14  LVPRGSKIT--VNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTS------ 65

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
              +       +D+G Y C   N    + +    +
Sbjct: 66  --ELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQL 98

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 70.1 bits (172), Expect = 1e-16
 Identities = 14/98 (14%), Positives = 32/98 (32%), Gaps = 6/98 (6%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSD 109
           +   +    F+   R   +                   V+W +G  ++S    Y ++   
Sbjct: 2   EPGKKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGLATEG 60

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
              ++ + +  P D G Y  +A    G+ +    + V 
Sbjct: 61  TRHTLTVREVGPADQGSYAVIA----GSSKVKFDLKVI 94

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 72.2 bits (177), Expect = 2e-16
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 3/105 (2%)

Query: 44  PLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY 103
           PL     + T     +     +     + Q   L C   G P P ++W K    +     
Sbjct: 100 PLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAE 159

Query: 104 SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            +S S     ++I + + ED G Y+C A N  G D+    + V++
Sbjct: 160 -ISTSGA--VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQA 201

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 15/113 (13%), Positives = 35/113 (30%), Gaps = 7/113 (6%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSK---RDYSMSYSDGVV 112
           P          ++  +   LLC      P   + +W      +     +   +S ++G  
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-- 66

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYS 165
           ++ I + +  D G Y C  ++   T       I       +  +    + +  
Sbjct: 67  NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQ 119

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 73.9 bits (181), Expect = 3e-16
 Identities = 14/92 (15%), Positives = 31/92 (33%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
           +    +      + V  +  L   +      +  W   +  L+ + +    + GVVSM I
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVI 107

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           +      +GEY     ++         V + +
Sbjct: 108 LKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 70.1 bits (171), Expect = 7e-15
 Identities = 12/98 (12%), Positives = 19/98 (19%), Gaps = 5/98 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
           T+               ++ Q             P     W    +            D 
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPC---EQKGLDN 376

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
             S+          GEY   A N          + + S
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRS 414

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 67.8 bits (165), Expect = 4e-14
 Identities = 12/93 (12%), Positives = 30/93 (32%), Gaps = 8/93 (8%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDG- 110
           T++        L    ++V +   + C  +       + W   N+ L + +Y    +   
Sbjct: 223 TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282

Query: 111 ------VVSMEIIDCKPEDSGEYKCVATNKHGT 137
                 ++   +      D+G Y C ++     
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 62.0 bits (150), Expect = 5e-12
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 4/106 (3%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
           ++ +   +T L RP   ++     L+C     P P V+W   + +          S  VV
Sbjct: 136 SIRNTLLYT-LRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK---EESPAVV 191

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQEL 158
             E          + +C A N+ G + T    I  ++       +L
Sbjct: 192 KKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQL 237

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 69.4 bits (170), Expect = 3e-16
 Identities = 20/93 (21%), Positives = 32/93 (34%), Gaps = 6/93 (6%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSM 114
           S   +            +   L C L  +P   V+W K   E+ +     +   D V  +
Sbjct: 12  SWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRL 70

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            +   + EDSGEY C        +  +  V V 
Sbjct: 71  VLPAVQLEDSGEYLCEI----DDESASFTVTVT 99

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 68.7 bits (168), Expect = 3e-16
 Identities = 19/90 (21%), Positives = 36/90 (40%), Gaps = 6/90 (6%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEI 116
                 +   ++      +L C L      ++ W +   +L + +   ++       +E+
Sbjct: 10  WGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITGE----EVEV 64

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            D  P DSG Y CV ++  G+D T   V V
Sbjct: 65  RDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 68.6 bits (168), Expect = 6e-16
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 8/96 (8%)

Query: 55  ESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGV 111
               +         +     +   L C LS        WYK  +++       +      
Sbjct: 6   SGPVHILSPQDKVSLTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKMDGRK 64

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
             + + + K +DSGE++C              V V+
Sbjct: 65  HRLILPEAKVQDSGEFECRT----EGVSAFFGVTVQ 96

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 70.2 bits (172), Expect = 1e-15
 Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 4/97 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
            +     F     P+  +  +   ++C +    PPT+ W    R++   K    +  S+ 
Sbjct: 96  KIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN 155

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
              ++I   K  D G Y+C        +     + V 
Sbjct: 156 --YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 63.3 bits (154), Expect = 4e-13
 Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 7/93 (7%)

Query: 61  TFLLRPRVMQVR--QTCKLLCCLSGKPP-PTVKWYKGNREL----SKRDYSMSYSDGVVS 113
              + P   ++   ++   LC ++G      + W+  N E      +R   +   D   +
Sbjct: 4   QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSST 63

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           + I +   +D+G YKCV T + GT     V + 
Sbjct: 64  LTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK 96

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 71.8 bits (176), Expect = 1e-15
 Identities = 24/99 (24%), Positives = 36/99 (36%), Gaps = 5/99 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSY 107
            V   P                Q+  L+C   G P PT+ W K    +    + D    +
Sbjct: 190 IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIF 249

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           SD    + I +    D  EY C+A NK G  + +  + V
Sbjct: 250 SDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 66.8 bits (163), Expect = 5e-14
 Identities = 15/97 (15%), Positives = 31/97 (31%), Gaps = 4/97 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
            +       F   P   + +  +   ++C +    PPT+ W    R++  +         
Sbjct: 96  KIFQKL--MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLS 153

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
              ++I   K  D G Y+C        +     + V 
Sbjct: 154 NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVI 190

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 56.4 bits (136), Expect = 3e-10
 Identities = 20/94 (21%), Positives = 37/94 (39%), Gaps = 5/94 (5%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNREL----SKRDYSMSYSDGVV 112
                +     + V ++   LC ++G      + W+  N E      +R   +   D   
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSS 62

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           ++ I +   +D+G YKCV T + GT     V + 
Sbjct: 63  TLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVK 96

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 72.4 bits (177), Expect = 1e-15
 Identities = 14/92 (15%), Positives = 31/92 (33%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
           +    +      + V  +  L   +      +  W   +  L+ + +    + GVVSM I
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVI 107

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           +      +GEY     ++         V + +
Sbjct: 108 LKMTETQAGEYLLFIQSEATNYTILFTVSIRN 139

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 69.7 bits (170), Expect = 1e-14
 Identities = 10/98 (10%), Positives = 19/98 (19%), Gaps = 5/98 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
           T+               ++   +           P     W    +        +   D 
Sbjct: 320 TIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGL---DN 376

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
             S+          GEY   A N          + +  
Sbjct: 377 GYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRR 414

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 62.4 bits (151), Expect = 3e-12
 Identities = 19/94 (20%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
           ++ +   +  L RP   ++     L+C     P P V+W   + +          S  VV
Sbjct: 136 SIRNTLLY-TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCK---EESPAVV 191

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             E          + +C A N+ G + T    I 
Sbjct: 192 KKEEKVLHELFGTDIRCCARNELGRECTRLFTID 225

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 60.5 bits (146), Expect = 1e-11
 Identities = 17/110 (15%), Positives = 33/110 (30%), Gaps = 12/110 (10%)

Query: 65  RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS------------KRDYSMSYSDGVV 112
           +P+V+      +  C   G P P+  W K + +              ++     +   V 
Sbjct: 415 KPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVS 474

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNF 162
           S  +   +       KC A N  GT     ++         +     H+ 
Sbjct: 475 SSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNSPGPFPFIQDGGTKHHH 524

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 58.2 bits (140), Expect = 1e-10
 Identities = 14/93 (15%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRELSK-RDYSMSYSDG 110
           T++        L    ++V +   + C          + W   N+ L +   + MS    
Sbjct: 223 TIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST 282

Query: 111 VVSME------IIDCKPEDSGEYKCVATNKHGT 137
             +M       +      D+G Y C ++     
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ 315

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 67.1 bits (164), Expect = 2e-15
 Identities = 23/99 (23%), Positives = 37/99 (37%), Gaps = 9/99 (9%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCC-LSGKPPPTVKWYK-GNRELSKRDYSMSYS 108
              S P    +   R   VR       +C   S  P  T+ W +  N +L  R       
Sbjct: 4   AAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR---AMDF 60

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           +G   + I + +P D+G Y C  +N    D+    + V+
Sbjct: 61  NG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 69.1 bits (169), Expect = 2e-15
 Identities = 20/93 (21%), Positives = 36/93 (38%), Gaps = 6/93 (6%)

Query: 62  FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEI 116
            +  P  + V   Q  KL C + G   P ++W K    +   D     +S    +  + +
Sbjct: 5   LMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSL 64

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCV-VIVES 148
              +  D+G Y C   +   T+ +  V + VE 
Sbjct: 65  KSVERSDAGRYWCQVEDGGETEISQPVWLTVEG 97

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 67.5 bits (165), Expect = 7e-15
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 9/95 (9%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGV 111
           TVE  P FT   +   +      +L C   G P P T+ W++G  ++     S S     
Sbjct: 94  TVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSV---- 149

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
               +       S  + C A N  G   +    + 
Sbjct: 150 ----LNVTGVTQSTMFSCEAHNLKGLASSRTATVH 180

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 67.7 bits (165), Expect = 2e-15
 Identities = 13/97 (13%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY--------SMSYSD 109
           P    L     +++   C +   + G+P P+++W      L++  +        + + + 
Sbjct: 4   PASVQLHTA--VEMHHWC-IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETV 60

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
               + +      ++G Y  +A N  G    + +   
Sbjct: 61  RHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 97

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 71.3 bits (174), Expect = 2e-15
 Identities = 23/102 (22%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 53  TVESAPNF--TFLLRPRVMQVRQTCKLLC-----CLSGKPPPTVKWYKGNRELSKRDYSM 105
            V    +    F+  P+++ +  +  L+C         K    ++WYK +  L K +   
Sbjct: 114 RVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKF 173

Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
               G   + + D   ED+G Y+CV T  H   + N    +E
Sbjct: 174 LSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIE 215

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 69.3 bits (169), Expect = 9e-15
 Identities = 19/115 (16%), Positives = 35/115 (30%), Gaps = 12/115 (10%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCL-------SGKPPPTVKWYKGNREL---SKR 101
               S        +       +   L C         S  P   + W+K +       + 
Sbjct: 13  GAARSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE 72

Query: 102 DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQ 156
           +  M   DG  ++ ++    EDSG Y C   N    D+ +  + V    ++    
Sbjct: 73  ETRMWAQDG--ALWLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPF 125

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 18/121 (14%), Positives = 36/121 (29%), Gaps = 18/121 (14%)

Query: 42  REPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLC---CLSGKPPPTVKWYKGNREL 98
              +++   ++  E+ P     L+     +     + C     +G P  T+ W+  N   
Sbjct: 211 TRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTH 270

Query: 99  SKRDY--------------SMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETNCV 143
            +  Y                + +   V +       ED   ++KCV  N          
Sbjct: 271 IESAYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTT 330

Query: 144 V 144
           V
Sbjct: 331 V 331

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 69.6 bits (170), Expect = 2e-15
 Identities = 24/108 (22%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
           TV   P+   +  P  + +     L C    G PP    W+K    +   D   + +   
Sbjct: 100 TVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMN 159

Query: 112 VSME---------IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
            S                  DSGEY C A N +GT   +    +++ E
Sbjct: 160 SSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE 207

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 58.1 bits (140), Expect = 4e-11
 Identities = 19/98 (19%), Positives = 36/98 (36%), Gaps = 11/98 (11%)

Query: 61  TFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSK-----RDYSMSYSDGVV- 112
           +       +QV   ++ KL C  SG   P V+W       +         +  Y+D V  
Sbjct: 3   SVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF 62

Query: 113 ---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
               +       +D+GEY C+ + + G +     + + 
Sbjct: 63  SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 66.6 bits (163), Expect = 3e-15
 Identities = 15/91 (16%), Positives = 31/91 (34%), Gaps = 6/91 (6%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEI 116
                 L    + V +T      LS +P    +W    + L +  D  +        + +
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEIIEDGKKHILIL 64

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            +C+   +GE    A N     ++   + V+
Sbjct: 65  HNCQLGMTGEVSFQAAN----TKSAANLKVK 91

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 69.1 bits (169), Expect = 4e-15
 Identities = 24/89 (26%), Positives = 41/89 (46%), Gaps = 5/89 (5%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDG 110
              +P         V++  +   L C + GKP PT++W+K    +S  +   + + + DG
Sbjct: 6   QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDG 65

Query: 111 VVSME--IIDCKPEDSGEYKCVATNKHGT 137
            +     +   K +D GEY CVA N+ G 
Sbjct: 66  ALFFYRTMQGKKEQDGGEYWCVAKNRVGQ 94

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 63.7 bits (155), Expect = 4e-13
 Identities = 24/99 (24%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVV- 112
               +F    +   +   +T  L C    G P PT+ W K    L         +   V 
Sbjct: 106 VLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVR 165

Query: 113 -----SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                ++ I + +P D G YKC+A N  GT E++   ++
Sbjct: 166 IVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLI 204

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 70.2 bits (171), Expect = 4e-15
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 3/95 (3%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLC-CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
            +   P+            +    L C  L  K    + WYK N+EL       S S   
Sbjct: 124 HIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ- 182

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            ++ I + + EDSG Y C         + + VV  
Sbjct: 183 -NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSR 216

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 48.7 bits (115), Expect = 2e-07
 Identities = 14/107 (13%), Positives = 31/107 (28%), Gaps = 13/107 (12%)

Query: 54  VESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKP----PPTVKWYKGNRELSKRDYSM-- 105
           + S  +   L+    + V   +   + C             + W   +  +   D+ +  
Sbjct: 223 IPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYS 282

Query: 106 ----SYSDGVVSMEIIDCKPEDSGE-YKCVATNKHGTDETNCVVIVE 147
               S      ++   +   E  G  Y C   N +        V++E
Sbjct: 283 ILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 42.5 bits (99), Expect = 2e-05
 Identities = 16/71 (22%), Positives = 22/71 (30%), Gaps = 5/71 (7%)

Query: 77  LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE-YKCVATNKH 135
           LL          V W K  +    R  +    +G   + I +    DS   Y C  T K+
Sbjct: 58  LLSHRYNDKDNVVNWEKIGKTR--RPLNRRVKNG--DLWIANYTSNDSHRRYLCTVTTKN 113

Query: 136 GTDETNCVVIV 146
           G      V   
Sbjct: 114 GDCVQGIVRSH 124

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 70.7 bits (173), Expect = 4e-15
 Identities = 19/94 (20%), Positives = 34/94 (36%), Gaps = 9/94 (9%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
           TV +  +       + +   +     C  +G P  TV W K  + +         S+   
Sbjct: 303 TVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGH-------SES-- 353

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            + I   K ED G Y+C   N   + E +  + +
Sbjct: 354 VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 68.8 bits (168), Expect = 2e-14
 Identities = 28/123 (22%), Positives = 47/123 (38%), Gaps = 5/123 (4%)

Query: 31  AYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPT 88
                  + R           E + S+   T  L  + +++    T  LLC   G P P+
Sbjct: 184 TKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPS 243

Query: 89  VKWYKGNRELSKRDYSMSYSDGVV---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
            +WYK     +++   +          ++ I D   EDSG+Y CV  N  G +    V+ 
Sbjct: 244 FRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLT 303

Query: 146 VES 148
           V +
Sbjct: 304 VTA 306

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 56.5 bits (136), Expect = 4e-10
 Identities = 19/99 (19%), Positives = 33/99 (33%), Gaps = 7/99 (7%)

Query: 55  ESAPNFTFLLRPRV-MQVRQTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG- 110
           +  P F      R+        ++ C  SG P P + W + +              SDG 
Sbjct: 1   QKGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60

Query: 111 --VVSMEIIDC-KPEDSGEYKCVATNKHGTDETNCVVIV 146
                    D  +   +  Y C+A N+ G+  +  V + 
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVR 99

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 45.3 bits (107), Expect = 3e-06
 Identities = 13/94 (13%), Positives = 27/94 (28%), Gaps = 13/94 (13%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCL---SGKPPPTVKWYKGNRELSKRDYSMSYSD 109
               A  +   +    +    +  + C +          V W+    E     +  +  D
Sbjct: 99  RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEEN---YFPGAEYD 155

Query: 110 GVVSM------EIIDCKPEDS-GEYKCVATNKHG 136
           G   +       I +  PED    Y+C   ++  
Sbjct: 156 GKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLT 189

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 64.7 bits (158), Expect = 1e-14
 Identities = 19/99 (19%), Positives = 31/99 (31%), Gaps = 12/99 (12%)

Query: 56  SAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
           S       + P   ++    T  L C   G P P  +W+K    L+              
Sbjct: 2   SKLQIC--VEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKK--------L 51

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES 152
             +     E  G Y C   N   + ++  V I+  E  +
Sbjct: 52  YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELNN 90

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 64.7 bits (158), Expect = 2e-14
 Identities = 18/98 (18%), Positives = 31/98 (31%), Gaps = 8/98 (8%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
           +               +    T  L C +  +P P + W K    L              
Sbjct: 6   SGLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLP------LPPSP-- 57

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
            + + +  P+D G Y CVAT+     + +  V +   E
Sbjct: 58  VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIE 95

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 66.8 bits (163), Expect = 2e-14
 Identities = 22/105 (20%), Positives = 37/105 (35%), Gaps = 8/105 (7%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-----KRDYSMSYS 108
            +  P         ++   +   L C   G+P PT++WYKG   +       R + M   
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 109 DGVV---SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
            G +    +        D G Y CVA N  G   ++   +  +  
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 66.0 bits (161), Expect = 4e-14
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLC-CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM 114
              +F       ++ V +   + C    G P PT+ W K    L  +D  ++   G   +
Sbjct: 110 LRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG--KL 167

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETN 141
            I   +  D+G+Y CV TN  G  E+ 
Sbjct: 168 MITYTRKSDAGKYVCVGTNMVGERESE 194

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 64.8 bits (158), Expect = 2e-14
 Identities = 23/112 (20%), Positives = 38/112 (33%), Gaps = 9/112 (8%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-----KRDYSMSYS 108
            +  P         ++   +   L C   G+P PT++WYKG   +       R + M   
Sbjct: 6   EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLP 65

Query: 109 DG---VVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESEEESKEQQ 156
            G    + +        D G Y CVA N  G   + +  + V +        
Sbjct: 66  SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHHHHHH 117

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 64.5 bits (157), Expect = 3e-14
 Identities = 23/111 (20%), Positives = 40/111 (36%), Gaps = 14/111 (12%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPP-TVKWYKGNREL---SKRDYSMS 106
           TV   P  +     +       +  ++ C +   PPP  + W      L   +   Y++ 
Sbjct: 10  TVNGPPIIS---STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVE 66

Query: 107 ---YSDGVVS-MEIIDCKPED-SGEYKCVATNKHGTDETNCVVIVESEEES 152
                +GV+S + I +    D    Y C A N  G+D     +  +  E S
Sbjct: 67  TISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 117

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 66.9 bits (163), Expect = 1e-13
 Identities = 15/98 (15%), Positives = 24/98 (24%), Gaps = 10/98 (10%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVS 113
           +    + T        +      L C  +  PP    W                      
Sbjct: 378 LYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQ--------HTQ--E 427

Query: 114 MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
           + I +   ++SG Y C A N         V  +    E
Sbjct: 428 LFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAE 465

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 63.8 bits (155), Expect = 1e-12
 Identities = 20/116 (17%), Positives = 40/116 (34%), Gaps = 2/116 (1%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKL-LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
           TV + P   F+       V     + L C       T  W+  N+ L      +  S+  
Sbjct: 283 TVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSP-RLQLSNDN 341

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGE 167
            ++ ++     D G Y+C   N+   D ++ V++             ++ +   G 
Sbjct: 342 RTLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGV 397

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 60.4 bits (146), Expect = 2e-11
 Identities = 10/67 (14%), Positives = 22/67 (32%), Gaps = 3/67 (4%)

Query: 78  LCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
             C       T  W+   + L       +S  +   ++ + +    D+  Y C   N   
Sbjct: 487 FTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNR--TLTLFNVTRNDARAYVCGIQNSVS 544

Query: 137 TDETNCV 143
            + ++ V
Sbjct: 545 ANRSDPV 551

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 58.8 bits (142), Expect = 7e-11
 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 13/96 (13%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
            V   P+ T ++ P            L C  +  P P   W                   
Sbjct: 554 DVLYGPD-TPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQ--------HTQ 604

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
              + I    P ++G Y C  +N       + V  +
Sbjct: 605 --VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSI 638

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 56.5 bits (136), Expect = 4e-10
 Identities = 17/96 (17%), Positives = 26/96 (27%), Gaps = 11/96 (11%)

Query: 53  TVESAPNF-TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
            V   P+  T        +  +   L C  +  PP    W+               S   
Sbjct: 198 NVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQ--------STQ- 248

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
             + I +    +SG Y C A N         V  + 
Sbjct: 249 -ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTIT 283

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 55.3 bits (133), Expect = 1e-09
 Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 2/95 (2%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
           +   E           + ++ +      C        T  W+  N+ L      +  S+G
Sbjct: 105 RVYPELPKPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPV-SPRLQLSNG 162

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
             ++ + +    D+  YKC   N      ++ V++
Sbjct: 163 NRTLTLFNVTRNDTASYKCETQNPVSARRSDSVIL 197

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 52.3 bits (125), Expect = 1e-08
 Identities = 16/98 (16%), Positives = 22/98 (22%), Gaps = 17/98 (17%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV-----------------SME 115
           +   LL     +      WYKG R    R                            S+ 
Sbjct: 15  KEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNASLL 74

Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
           I +    D+G Y          +E          E  K
Sbjct: 75  IQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPK 112

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.9 bits (152), Expect = 1e-13
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 15/108 (13%)

Query: 55  ESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKP---PPTVKWYKGN-RELSKRD------ 102
              P   FL +P  + V   +   ++  ++GK     PT+KW+KG   EL  +       
Sbjct: 8   AEEPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSF 67

Query: 103 ---YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
              ++ + +   V + I      D G Y+     K   D     + VE
Sbjct: 68  KESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVE 115

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 63.5 bits (154), Expect = 3e-13
 Identities = 25/105 (23%), Positives = 41/105 (39%), Gaps = 9/105 (8%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNREL-------SKRDYS 104
            +   P    +     +   +T  L+C     PP T   WYK            S+  + 
Sbjct: 79  QLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFF 138

Query: 105 MSYSDGVVSMEIIDCKPE-DSGEYKCVATNKHGTDETNCVVIVES 148
           +S S G   + I +   E D G+Y+C  T+  G+D+    + V S
Sbjct: 139 VSSSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVRS 183

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 52.7 bits (126), Expect = 3e-09
 Identities = 13/70 (18%), Positives = 18/70 (25%), Gaps = 8/70 (11%)

Query: 73  QTCKLLCCLSGKPPPTV--KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV 130
               L C L+         +W KG   L +              E      +  GEY CV
Sbjct: 14  SKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPGQ------KTEFKVDSDDQWGEYSCV 67

Query: 131 ATNKHGTDET 140
              +      
Sbjct: 68  FLPEPMGTAN 77

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 63.9 bits (155), Expect = 3e-13
 Identities = 22/96 (22%), Positives = 37/96 (38%), Gaps = 4/96 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLC-CLSGKPPPTVKWYK-GNRELSKRDYSMSYSDG 110
           TV   P+ T        ++    KL C    G  P   +W K  + +     +    +  
Sbjct: 117 TVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSP 176

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           V+S  + +   E SG Y C   N+ G+D+    + V
Sbjct: 177 VIS--VKNASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 42.7 bits (100), Expect = 1e-05
 Identities = 15/103 (14%), Positives = 28/103 (27%), Gaps = 29/103 (28%)

Query: 73  QTCKLLCCLSGKP----PPTVKWYKGNRELSKRDYSMSYSD------------------- 109
           +T  L C  +  P    P  ++W     +    D  +                       
Sbjct: 16  ETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFT 75

Query: 110 ------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                 G  S+ + + +  D G Y+C      G      ++ V
Sbjct: 76  SNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTV 118

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 65.1 bits (158), Expect = 4e-13
 Identities = 16/106 (15%), Positives = 31/106 (29%), Gaps = 10/106 (9%)

Query: 53  TVESAPNFT-FLLRPRVMQVR--QTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYS 108
            V        F +    + V   +   L+      P P   +W   NR  + +      S
Sbjct: 306 EVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKS 365

Query: 109 DGVVSME------IIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           +   ++       +   K  + G Y  + +N          V V +
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNT 411

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 63.9 bits (155), Expect = 1e-12
 Identities = 16/104 (15%), Positives = 36/104 (34%), Gaps = 7/104 (6%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSD 109
           +   ++ P  +      +++  +   + C +          W + N +   ++   S+  
Sbjct: 205 RPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHH 264

Query: 110 GVVSME------IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           G  + E      I   +  DSG + C A N  G+      + V 
Sbjct: 265 GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 62.4 bits (151), Expect = 3e-12
 Identities = 20/109 (18%), Positives = 31/109 (28%), Gaps = 19/109 (17%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK------------ 100
            V + P    L   R++       L C  +G P PT+ WY       +            
Sbjct: 408 YVNTKP--EILTYDRLVNGM----LQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQT 461

Query: 101 -RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
                  +   VV   I     + +G  +C A N  G          + 
Sbjct: 462 LNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 49.7 bits (118), Expect = 9e-08
 Identities = 7/93 (7%), Positives = 19/93 (20%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
            V        + R    +      + C L+              +   +D          
Sbjct: 110 FVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAG 169

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
            M     +        C    +  +  +   ++
Sbjct: 170 IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFIL 202

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 42.7 bits (100), Expect = 2e-05
 Identities = 13/85 (15%), Positives = 27/85 (31%), Gaps = 11/85 (12%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
              S P+        +++V    +LLC      P  VKW     + +  +    +     
Sbjct: 32  GEPSPPSIHPGKSDLIVRVGDEIRLLC----TDPGFVKWTFEILDETNENKQNEWI---- 83

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGT 137
                  +  ++G+Y C   +    
Sbjct: 84  ---TEKAEATNTGKYTCTNKHGLSN 105

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 63.0 bits (153), Expect = 1e-12
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 4/100 (4%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG 110
                  P         V    +  +++C  +          K      +   +  + D 
Sbjct: 180 NRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDN 239

Query: 111 VV----SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                 ++ +     +D+G Y CVA+N  GT        V
Sbjct: 240 YYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 53.8 bits (129), Expect = 2e-09
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 5/97 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPP-PTVKWYKGNRELSKRDYSMSYSD 109
            V+   +  + L  + + V   Q   L C ++      +V   +       R     +S 
Sbjct: 84  YVKDPAHS-WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP 142

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                 I   K  DS  Y C          +  + + 
Sbjct: 143 WR-GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLK 178

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 49.2 bits (117), Expect = 9e-08
 Identities = 14/79 (17%), Positives = 28/79 (35%), Gaps = 8/79 (10%)

Query: 68  VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 127
           V++  +T  L C  +G    +V+W          D     S    ++   +   +++G Y
Sbjct: 15  VVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGS----TLTTRNATFKNTGTY 66

Query: 128 KCVATNKHGTDETNCVVIV 146
           +C          T   + V
Sbjct: 67  RCTELEDPMAGSTTIHLYV 85

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 63.1 bits (153), Expect = 1e-12
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 4/100 (4%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN----RELSKRDYSMS 106
           Q+ +   P  T +    V    +  +++C  S        + + N        + D+  +
Sbjct: 180 QKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN 239

Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
               V+++ +     + +G Y CVA+N  G   T+    V
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 51.1 bits (122), Expect = 2e-08
 Identities = 16/96 (16%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPP-PTVKWYKGNRELSKRDYSMSYSD 109
            V+      + +  + + V   Q   L C L+       V   +       R  + S+S 
Sbjct: 84  YVKDPARP-WNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSP 142

Query: 110 GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
                 I   K   S +Y+C A        +  + +
Sbjct: 143 WH-GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRL 177

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 46.5 bits (110), Expect = 7e-07
 Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 55  ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM 114
            S P     +   V++   T  L C  +G    +V+W              S S     +
Sbjct: 2   GSIPVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHWTLYSDGSSS----IL 53

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
              +   +++G Y+C              + V+
Sbjct: 54  STNNATFQNTGTYRCTEPGDPLGGSAAIHLYVK 86

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 60.4 bits (146), Expect = 4e-12
 Identities = 11/74 (14%), Positives = 24/74 (32%), Gaps = 9/74 (12%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
           Q+  L         P+V+      +  +   ++S         +   + +DSG + C   
Sbjct: 113 QSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS---------VSQLELQDSGTWTCTVL 163

Query: 133 NKHGTDETNCVVIV 146
                 E    ++V
Sbjct: 164 QNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 50.7 bits (121), Expect = 1e-08
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 18/94 (19%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNREL------------------SKRDYSMSYSDGVVSM 114
            T +L C  S K      W   N+                            +  G   +
Sbjct: 11  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 70

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            I + K EDS  Y C   ++    +     +  +
Sbjct: 71  IIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 104

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 60.8 bits (147), Expect = 7e-12
 Identities = 20/101 (19%), Positives = 26/101 (25%), Gaps = 16/101 (15%)

Query: 51  QETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYK-GNRELSKRDYSMSY 107
           +  V   P       P             +C   G P P +K  K G   L         
Sbjct: 177 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLP-------- 228

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
                  E +    +  G Y C A +  G       V V S
Sbjct: 229 -----IGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 44.3 bits (104), Expect = 4e-06
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 3/86 (3%)

Query: 66  PRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE 122
           PRV++V     ++C L G  P     V    G++ L+      + S    +   +  + E
Sbjct: 12  PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDE 71

Query: 123 DSGEYKCVATNKHGTDETNCVVIVES 148
            +    C     + + ET   V + S
Sbjct: 72  GTQRLTCAVILGNQSQETLQTVTIYS 97

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 59.1 bits (143), Expect = 1e-11
 Identities = 16/95 (16%), Positives = 25/95 (26%), Gaps = 7/95 (7%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGV 111
            +E  P F      R +       L C   G P P  + W +    L+            
Sbjct: 102 GLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQR--- 158

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
               +       +  + C A N  G   +    I 
Sbjct: 159 ---SLHVPGLNKTSSFSCEAHNAKGVTTSRTATIT 190

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 55.7 bits (134), Expect = 2e-10
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 13/93 (13%)

Query: 61  TFLLRPRVMQVR--QTCKLLC-CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV----- 112
            F+  P  +      T  L C       PP V W +  + L   D + +           
Sbjct: 4   PFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDD 63

Query: 113 -----SMEIIDCKPEDSGEYKCVATNKHGTDET 140
                 + I   +  D+G+Y+C+    H T  +
Sbjct: 64  WIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVS 96

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 59.3 bits (143), Expect = 1e-11
 Identities = 15/102 (14%), Positives = 26/102 (25%), Gaps = 5/102 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS----MSYS 108
           +V      +               + C ++  P P V+W            +    M   
Sbjct: 100 SVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEK 159

Query: 109 DGVVSMEII-DCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
           DG +S+ +             CV  N         V    S+
Sbjct: 160 DGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGVYVSGYLSQ 201

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 43.9 bits (103), Expect = 4e-06
 Identities = 10/86 (11%), Positives = 18/86 (20%), Gaps = 18/86 (20%)

Query: 81  LSGKPPPTVKWYKGNRELSK------------------RDYSMSYSDGVVSMEIIDCKPE 122
           +S  P   V W+K      +                    + +  S     + +      
Sbjct: 18  VSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANIS 77

Query: 123 DSGEYKCVATNKHGTDETNCVVIVES 148
             G Y C              + V  
Sbjct: 78  HDGNYLCRMKLGETEVTKQEHLSVVK 103

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.8 bits (144), Expect = 2e-11
 Identities = 12/102 (11%), Positives = 34/102 (33%), Gaps = 8/102 (7%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
           +V+   +F   ++           +   + G+P P+++W      L++  +  +      
Sbjct: 242 SVQVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPA 301

Query: 113 --------SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                    + +      ++G Y  +A N  G    + +   
Sbjct: 302 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF 343

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 59.8 bits (144), Expect = 3e-11
 Identities = 23/150 (15%), Positives = 39/150 (26%), Gaps = 7/150 (4%)

Query: 4   RVFEPRSLRYP--QDNPRL---RTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAP 58
           +  +  SL+      NP       R + +     +  V + + +   Q         S  
Sbjct: 98  KTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCG 157

Query: 59  NFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
             T  ++     V       L C + G+      W     E S           +     
Sbjct: 158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLA 217

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                 +     C A N  G  E +  V V
Sbjct: 218 NVTSDLNRKNVTCWAENDVGRAEVSVQVNV 247

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 59.4 bits (143), Expect = 3e-11
 Identities = 16/107 (14%), Positives = 30/107 (28%), Gaps = 8/107 (7%)

Query: 57  APNFTFLLRPRVMQVR-QTCKLLCC--LSGKPPPTVKWYKGNREL---SKRDYSMSYSDG 110
           A          ++        +  C     +   T+ WYK + +    +++   +     
Sbjct: 3   ADKCKEREEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE 62

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE 157
              +  +  K EDSG Y CV  N                E +     
Sbjct: 63  --KLWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNA 107

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 58.2 bits (140), Expect = 7e-11
 Identities = 19/103 (18%), Positives = 37/103 (35%), Gaps = 11/103 (10%)

Query: 54  VESAPNFTFLLRPRVMQ---VRQTCKLLC------CLSGKPPPTVKWYKGNRELSKRDYS 104
           VE+ PN  +  +    Q   V     L+C             P ++WYK  + L   +  
Sbjct: 97  VENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH 156

Query: 105 MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            S       + +++   +  G Y C A+  +   +     ++E
Sbjct: 157 FSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 52.0 bits (124), Expect = 1e-08
 Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 14/84 (16%)

Query: 77  LLCCLSGKPPPTVKWYKGNRELSKRDY-------------SMSYSDGVVSMEIIDCKPED 123
           L+C ++G+      W      + + D              +   S  +  + I + +   
Sbjct: 229 LICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF 288

Query: 124 -SGEYKCVATNKHGTDETNCVVIV 146
               + C A N HG D     +I 
Sbjct: 289 YKHPFTCFAKNTHGIDAAYIQLIY 312

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 59.0 bits (142), Expect = 4e-11
 Identities = 13/100 (13%), Positives = 29/100 (29%), Gaps = 5/100 (5%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
            V + P  T  ++   +         C    G+PP  + W+     +        +  G 
Sbjct: 113 RVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGT 172

Query: 112 VSME----IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           V++     ++     D     C   ++         V + 
Sbjct: 173 VTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLT 212

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 56.6 bits (136), Expect = 3e-10
 Identities = 14/82 (17%), Positives = 18/82 (21%), Gaps = 6/82 (7%)

Query: 66  PRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDS 124
                 +    L C     P PT   W      L               + I       +
Sbjct: 226 NNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPF---AVAQGA--QLLIRPVDKPIN 280

Query: 125 GEYKCVATNKHGTDETNCVVIV 146
               C  TN  G  +    V V
Sbjct: 281 TTLICNVTNALGARQAELTVQV 302

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 58.2 bits (140), Expect = 7e-11
 Identities = 23/97 (23%), Positives = 27/97 (27%), Gaps = 6/97 (6%)

Query: 53  TVESAPNFTFL-LRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDG 110
            V+  P  T           R   KL C     PP T   W   N  L K       +  
Sbjct: 227 NVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKG----VEAQN 282

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
                        +G Y C ATN  GT      V + 
Sbjct: 283 RTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 9/103 (8%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTC-----KLLCCLS-GKPPPTVKWYKGNRELSKRDYSMS 106
           TV + P         V++ ++          C  + GKPP  V W    +  ++     +
Sbjct: 126 TVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRN 185

Query: 107 YSDGVVSM---EIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            +  V  +    ++  +        C+        + +  + V
Sbjct: 186 PNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNV 228

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 57.2 bits (137), Expect = 8e-11
 Identities = 10/64 (15%), Positives = 19/64 (29%), Gaps = 2/64 (3%)

Query: 78  LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNKHG 136
           L C    P   + W   ++ +   +   +       + + +    E SG Y C       
Sbjct: 133 LTC-PQYPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKP 191

Query: 137 TDET 140
            D  
Sbjct: 192 EDAN 195

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 44.1 bits (103), Expect = 3e-06
 Identities = 9/78 (11%), Positives = 24/78 (30%), Gaps = 8/78 (10%)

Query: 77  LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG 136
           LL C        + W+K  + +         ++      +     +  G Y+C  +    
Sbjct: 22  LLTC--DAEAKNITWFKDGKMIG------FLTEDKKKWNLGSNAKDPRGMYQCKGSQNKS 73

Query: 137 TDETNCVVIVESEEESKE 154
                   +  +++  K+
Sbjct: 74  KPLQVYYRMGSADDAKKD 91

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 13/74 (17%), Positives = 25/74 (33%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
            T  + C    +    V     N ++  +  + S S     +     + ED G Y C A 
Sbjct: 262 DTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGDLFFKKVQVEDGGVYTCYAM 321

Query: 133 NKHGTDETNCVVIV 146
            +   +  +  + V
Sbjct: 322 GETFNETLSVELKV 335

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 57.6 bits (138), Expect = 2e-10
 Identities = 20/103 (19%), Positives = 27/103 (26%), Gaps = 20/103 (19%)

Query: 51  QETVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS 108
           +  V   P       P             +C   G P P +K  K               
Sbjct: 362 ELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK--------------- 406

Query: 109 DGVVSMEIIDC---KPEDSGEYKCVATNKHGTDETNCVVIVES 148
           DG   + I +      +  G Y C A +  G       V V S
Sbjct: 407 DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 449

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.5 bits (104), Expect = 4e-06
 Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 7/106 (6%)

Query: 48  TFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRELSKRDYS 104
            +  +T         L+ PRV++V     ++C L G  P     V    G++ L+     
Sbjct: 179 PYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--V 236

Query: 105 MSYSDGVVSMEIIDCKPEDSGEYK--CVATNKHGTDETNCVVIVES 148
              +D   +   +    ED G  +  C     + + ET   V + S
Sbjct: 237 TYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.1 bits (103), Expect = 6e-06
 Identities = 17/100 (17%), Positives = 28/100 (28%), Gaps = 6/100 (6%)

Query: 53  TVESAPNFTFL-LRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKRDYSMSYS 108
           TV   P    L   P    V +   L C + G  P    TV   +G +EL +        
Sbjct: 81  TVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG--E 138

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
              V+  ++  +      + C                  +
Sbjct: 139 PAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSA 178

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 10/95 (10%), Positives = 24/95 (25%), Gaps = 11/95 (11%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
           T+ S P    +L    +       + C    +   T+          +            
Sbjct: 279 TIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPR-----------A 327

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            + +     ++   + C AT +      +     E
Sbjct: 328 QLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRE 362

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 56.3 bits (135), Expect = 3e-10
 Identities = 17/105 (16%), Positives = 36/105 (34%), Gaps = 9/105 (8%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSD 109
           +E +++ P  +      +++   T  ++C +          W K N +          S 
Sbjct: 182 REAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSW 241

Query: 110 GVV--------SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                      ++ I   + +DSG + C A N  G+      + V
Sbjct: 242 HRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 49.0 bits (116), Expect = 1e-07
 Identities = 7/93 (7%), Positives = 21/93 (22%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV 112
            V        +  P   +      + C L+          + + +    D +   +    
Sbjct: 87  FVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAG 146

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
                  +       +C A        ++   +
Sbjct: 147 ITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTL 179

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 12/82 (14%), Positives = 23/82 (28%), Gaps = 10/82 (12%)

Query: 56  SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME 115
           S P+        +++   T  L C      P  V+W          +   +         
Sbjct: 11  SPPSIHPAQSELIVEAGDTLSLTC----IDPDFVRWTFKTYFNEMVENKKN------EWI 60

Query: 116 IIDCKPEDSGEYKCVATNKHGT 137
               +   +G Y C  +N   +
Sbjct: 61  QEKAEATRTGTYTCSNSNGLTS 82

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 56.2 bits (135), Expect = 3e-10
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 6/100 (6%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-----SKRDYSMSY 107
              S+ N +      V++  +   L+C + G      +W    +E         D+ +  
Sbjct: 177 LQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDM 236

Query: 108 SDGVVS-MEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
              + S + I   + EDSG Y C  T      +    + +
Sbjct: 237 PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINI 276

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 46.2 bits (109), Expect = 1e-06
 Identities = 14/78 (17%), Positives = 26/78 (33%), Gaps = 4/78 (5%)

Query: 68  VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 127
           V+ V  T  L C         V W + ++E  +             + + +    D+GEY
Sbjct: 11  VLNVSSTFVLTC----SGSAPVVWERMSQEPPQEMAKAQDGTFSSVLTLTNLTGLDTGEY 66

Query: 128 KCVATNKHGTDETNCVVI 145
            C   +  G +      +
Sbjct: 67  FCTHNDSRGLETDERKRL 84

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 43.9 bits (103), Expect = 6e-06
 Identities = 7/67 (10%), Positives = 18/67 (26%), Gaps = 8/67 (11%)

Query: 80  CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE 139
           C    P   V  ++   +++       +  G            +   Y C  T      +
Sbjct: 117 CRVTDPQLVVTLHEKKGDVALP-VPYDHQRGFS-------GIFEDRSYICKTTIGDREVD 168

Query: 140 TNCVVIV 146
           ++   + 
Sbjct: 169 SDAYYVY 175

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 56.0 bits (134), Expect = 4e-10
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 6/83 (7%)

Query: 76  KLLCCLSGKPPPTVKWYK-GNRELSKRDYSMSYSDGVVSME-----IIDCKPEDSGEYKC 129
           K     +     T+ WY        +   +    +  +S E            D+G Y C
Sbjct: 37  KFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTC 96

Query: 130 VATNKHGTDETNCVVIVESEEES 152
           +  N     +    + V  ++  
Sbjct: 97  MLRNTTYCSKVAFPLEVVQKDSC 119

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 53.7 bits (128), Expect = 3e-09
 Identities = 16/135 (11%), Positives = 33/135 (24%), Gaps = 21/135 (15%)

Query: 25  IPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK 84
           + +T+   V    +      +         E  P    L+          C +       
Sbjct: 207 LTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLI---------PCTVYFSFLMD 257

Query: 85  PPPTVKWYKGNRELSKRDYSMSYSDGV-----------VSMEIIDCKPED-SGEYKCVAT 132
               V W    ++       ++ ++ +             + I     ED    Y C A 
Sbjct: 258 SRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHAR 317

Query: 133 NKHGTDETNCVVIVE 147
           +  G       V  +
Sbjct: 318 SAKGEVAKAAKVKQK 332

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 53.3 bits (127), Expect = 4e-09
 Identities = 12/64 (18%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 74  TCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
           TC  +         PT+ WY G  ++   +  +       ++  +     ++G Y CV T
Sbjct: 141 TCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGM---NLSFLIALISNNGNYTCVVT 197

Query: 133 NKHG 136
               
Sbjct: 198 YPEN 201

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.5 bits (134), Expect = 8e-10
 Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 5/79 (6%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
            T + +C   G PPP + W    + L           + DG  ++E+   + +D+G Y C
Sbjct: 401 HTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLC 458

Query: 130 VATNKHGTDETNCVVIVES 148
           +A N  G D     + V S
Sbjct: 459 IAANAGGNDSMPAHLHVRS 477

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 55.2 bits (132), Expect = 1e-09
 Identities = 11/76 (14%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
           Q+  L         P+V+      +  +   ++S         +   + +DSG + C   
Sbjct: 112 QSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS---------VSQLELQDSGTWTCTVL 162

Query: 133 NKHGTDETNCVVIVES 148
                 E    ++V +
Sbjct: 163 QNQKKVEFKIDIVVLA 178

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 49.4 bits (117), Expect = 1e-07
 Identities = 15/94 (15%), Positives = 25/94 (26%), Gaps = 18/94 (19%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNREL------------------SKRDYSMSYSDGVVSM 114
            T +L C  S K      W   N+                            +  G   +
Sbjct: 10  DTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPL 69

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            I + K EDS  Y C   ++    +     +  +
Sbjct: 70  IIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTAN 103

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 44.0 bits (103), Expect = 6e-06
 Identities = 12/109 (11%), Positives = 26/109 (23%), Gaps = 5/109 (4%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYS--- 108
           E VE +    F +           +     S K   T         + +           
Sbjct: 192 EQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGK 251

Query: 109 --DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ 155
                +++     +   SG        K G       ++V    + ++ 
Sbjct: 252 KLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKN 300

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 53.7 bits (129), Expect = 1e-09
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 15/96 (15%)

Query: 59  NFTFLLRPRVMQVRQTCK---LLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME 115
           +     R    ++  TC    L C +     P +  Y+  + L               + 
Sbjct: 99  DLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLKLSQ----------RVI 148

Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
                   S ++KC A NK    + + V  V   E+
Sbjct: 149 THKWTTSLSAKFKCTAGNKVS--KESSVEPVSCPEK 182

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 46.0 bits (109), Expect = 8e-07
 Identities = 9/75 (12%), Positives = 24/75 (32%), Gaps = 10/75 (13%)

Query: 83  GKPPPTVKWYKGNRELS----KRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVAT 132
                 +KW K + +      +++                +++I   K +D   YK    
Sbjct: 27  SDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIY 86

Query: 133 NKHGTDETNCVVIVE 147
           +  G +    +  ++
Sbjct: 87  DTKGKNVLEKIFDLK 101

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 53.8 bits (128), Expect = 2e-09
 Identities = 18/123 (14%), Positives = 35/123 (28%), Gaps = 24/123 (19%)

Query: 48  TFWQETVESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPPTVKWYKGNREL------- 98
              + T  +  N   +    V+QV +     + C  +      V WY G           
Sbjct: 125 VVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGT 184

Query: 99  -------SKRDYSMSYSD--------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143
                  ++   +   S+        G  ++ I   K  D+G   C      G  + +  
Sbjct: 185 YQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELDADRS 244

Query: 144 VIV 146
             +
Sbjct: 245 STI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 39.1 bits (90), Expect = 2e-04
 Identities = 14/101 (13%), Positives = 22/101 (21%), Gaps = 33/101 (32%)

Query: 73  QTCKLLC---CLSGKPPPTVKWYKGNRELSKRDYSMSY---------------------- 107
            T +L C     +   PP + W KG                                   
Sbjct: 18  GTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGD 77

Query: 108 --------SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140
                   +    ++ +    P+D G Y C         E 
Sbjct: 78  FLGRASVANLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEF 118

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 53.0 bits (127), Expect = 5e-09
 Identities = 18/117 (15%), Positives = 34/117 (29%), Gaps = 14/117 (11%)

Query: 32  YVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVK 90
           Y  +     R +P+Q+                +  RV    +   L C     K    V 
Sbjct: 63  YRCQRGLSGRSDPIQLEI------HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVL 116

Query: 91  WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           +Y+  +      ++ + +    +          +G Y C    KH        V V+
Sbjct: 117 YYRNGKAFKFFHWNSNLTILKTN-------ISHNGTYHCSGMGKHRYTSAGISVTVK 166

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 43.4 bits (102), Expect = 9e-06
 Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 10/69 (14%)

Query: 77  LLCCLSGKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
           L C +   P   + +W+           S           I      DSGEY+C      
Sbjct: 21  LHCEVLHLPGSSSTQWFLNGTATQTSTPSYR---------ITSASVNDSGEYRCQRGLSG 71

Query: 136 GTDETNCVV 144
            +D     +
Sbjct: 72  RSDPIQLEI 80

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 42.2 bits (99), Expect = 2e-05
 Identities = 20/92 (21%), Positives = 30/92 (32%), Gaps = 14/92 (15%)

Query: 53  TVESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPP-----TVKWYKGNRELSKRDYSM 105
           TV+       L       + +     L C                +Y G++ L  R+ S 
Sbjct: 164 TVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSS 223

Query: 106 SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
            Y        I+  + EDSG Y C A  + G 
Sbjct: 224 EYQ-------ILTARREDSGLYWCEAATEDGN 248

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 52.4 bits (125), Expect = 5e-09
 Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)

Query: 78  LCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT 137
           L CLS      ++W   ++ L   +  M+ S     + I   K ED+GEY+C  +N    
Sbjct: 130 LTCLSNDIGANIQWLFNSQSLQLTE-RMTLSQNNSILRIDPIKREDAGEYQCEISNPVSV 188

Query: 138 DETN 141
             +N
Sbjct: 189 RRSN 192

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 43.1 bits (101), Expect = 9e-06
 Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 29/136 (21%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMS- 106
           + T+E+ P       P+V        LL            WYKGN     ++   +  + 
Sbjct: 1   EVTIEAVP-------PQV-AEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNS 52

Query: 107 ---------------YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
                          YS+G  S+       +D G Y    T+++       V     +  
Sbjct: 53  NMNFTGQAYSGREIIYSNG--SLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPV 110

Query: 152 SKEQQELAHNFLYSGE 167
           ++   ++ +  +   +
Sbjct: 111 TQPFLQVTNTTVKELD 126

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 53.1 bits (126), Expect = 5e-09
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 4/71 (5%)

Query: 70  QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSD----GVVSMEIIDCKPEDSG 125
           +V    K LC  S      V      +     +  +  +     G  S+ I   + ED+G
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAG 303

Query: 126 EYKCVATNKHG 136
            Y C A +   
Sbjct: 304 RYLCGAHSDGQ 314

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 47.3 bits (111), Expect = 6e-07
 Identities = 18/96 (18%), Positives = 32/96 (33%), Gaps = 8/96 (8%)

Query: 71  VRQTCKLLCCLSGKPPPTVKWYKGNREL--------SKRDYSMSYSDGVVSMEIIDCKPE 122
           ++  C   C  S       KW     +         SK   +   +  +VS+ +      
Sbjct: 460 LKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRA 519

Query: 123 DSGEYKCVATNKHGTDETNCVVIVESEEESKEQQEL 158
           D G Y C     H   ET  V +   E ++   +++
Sbjct: 520 DEGWYWCGVKQGHFYGETAAVYVAVEERKAAGSRDV 555

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 45.0 bits (105), Expect = 4e-06
 Identities = 16/121 (13%), Positives = 32/121 (26%), Gaps = 18/121 (14%)

Query: 39  VRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVK-WYKGNRE 97
           +              V   P      +   + + +T  + C    +     K  YK    
Sbjct: 94  LGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGL 153

Query: 98  LSKRDYSMSYS-----------------DGVVSMEIIDCKPEDSGEYKCVATNKHGTDET 140
                   S                     + S+ I   +  D+G+Y C A +   +++ 
Sbjct: 154 YPVLVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKK 213

Query: 141 N 141
           N
Sbjct: 214 N 214

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 14/106 (13%), Positives = 33/106 (31%), Gaps = 22/106 (20%)

Query: 58  PNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYK----------------GNRELS 99
              T    P V++     +  +LC  + K   ++K++                      +
Sbjct: 330 EESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKA 389

Query: 100 KRDYSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
           + +  +S  +    G  ++ +      D+G Y C+         T 
Sbjct: 390 QYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTV 435

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 53.2 bits (127), Expect = 5e-09
 Identities = 15/98 (15%), Positives = 37/98 (37%), Gaps = 6/98 (6%)

Query: 58  PNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDGVV 112
                 LR + ++V   Q     C   G+     + +    ++         ++ S   +
Sbjct: 163 TRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFI 222

Query: 113 SM-EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
           +   +++    D+G+Y+C+   + G   +N   +V  E
Sbjct: 223 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKE 260

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 49.7 bits (118), Expect = 4e-08
 Identities = 14/94 (14%), Positives = 31/94 (32%), Gaps = 10/94 (10%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSM----------SYSDGVVSMEIIDCKPE 122
            +  L C    +    ++  + + +  + D S+              G     I   +  
Sbjct: 18  SSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVR 77

Query: 123 DSGEYKCVATNKHGTDETNCVVIVESEEESKEQQ 156
           DSG+Y+C+       D     V V++     + +
Sbjct: 78  DSGQYRCLVICGAAWDYKYLTVKVKASYMRIDTR 111

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 49.4 bits (117), Expect = 2e-08
 Identities = 14/95 (14%), Positives = 31/95 (32%), Gaps = 13/95 (13%)

Query: 66  PRVMQVR--QTCKLLCCLSGKPPPTVKWY-------KGNRELSKRDYSMSYSDGVV---- 112
              +++   +   L C    +    + +          +++L  RD        +     
Sbjct: 15  SHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 74

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           ++ I      D G Y C A++   T + +  V V 
Sbjct: 75  TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 50.5 bits (120), Expect = 2e-08
 Identities = 13/81 (16%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 68  VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 127
           + Q+  +  L C  +G   P   W             ++      ++ +      +   Y
Sbjct: 12  LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNG--KVTNEGTTSTLTMNPVSFGNEHSY 69

Query: 128 KCVATNKHGTDETNCVVIVES 148
            C AT +    E    V + S
Sbjct: 70  LCTATCESRKLEKGIQVEIYS 90

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 46.3 bits (109), Expect = 7e-07
 Identities = 11/106 (10%), Positives = 31/106 (29%), Gaps = 8/106 (7%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRELSKRDYSM---- 105
            + S P    +     ++  +   + C ++   P     +   KG+  +  +++      
Sbjct: 87  EIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADR 146

Query: 106 -SYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
            S     + +       +      C A       ++   V    +E
Sbjct: 147 KSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVPTVRQAVKE 192

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 50.9 bits (122), Expect = 3e-08
 Identities = 15/73 (20%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 78  LCCLSGKPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
           L C +     +V W   N  +    + +      SDG  ++   +   +D+G Y C+ +N
Sbjct: 361 LKCRASTSLTSVSWITPNGTVMTHGAYKVRIAVLSDG--TLNFTNVTVQDTGMYTCMVSN 418

Query: 134 KHGTDETNCVVIV 146
             G    +  + V
Sbjct: 419 SVGNTTASATLNV 431

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 50.6 bits (120), Expect = 3e-08
 Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 13/94 (13%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP----TVKWYKGNRELSKRDYSMSYSDGVV 112
           A   +     R         L   ++G  P     T  W K ++            +   
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE---------NNTA 52

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           ++ + D   E++G YK    +          V +
Sbjct: 53  TLTVADATSENAGSYKVTVQDTDTMTSVESEVFL 86

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 49.1 bits (116), Expect = 1e-07
 Identities = 15/104 (14%), Positives = 28/104 (26%), Gaps = 20/104 (19%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCL---SGKPPP-----TVKWYKGNRELSKRD 102
            +E A     +  P+   V      +L   +    GK P         W KG   +    
Sbjct: 86  LMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVI---- 141

Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                 D    + I +   + +G Y      +      +    +
Sbjct: 142 ------DTTQDITIQEFTADKNGVYTVKVWGESEDSAASASTKI 179

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 50.2 bits (119), Expect = 3e-08
 Identities = 14/86 (16%), Positives = 28/86 (32%), Gaps = 11/86 (12%)

Query: 73  QTCKLLCCLSGKPPPTVKWY-------KGNRELSKRDYSMSYSDGVV----SMEIIDCKP 121
           +   L C    +    + +          +++L  RD        +     ++ I     
Sbjct: 121 EKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTR 180

Query: 122 EDSGEYKCVATNKHGTDETNCVVIVE 147
            D G Y C A++   T + +  V V 
Sbjct: 181 SDQGLYTCAASSGLMTKKNSTFVRVH 206

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 10/80 (12%), Positives = 22/80 (27%), Gaps = 3/80 (3%)

Query: 77  LLCCLSGKPPPTVKWYK--GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK 134
           ++ CL       V        +        +S+ D      I       +G   C A   
Sbjct: 28  VIPCLGSISNLNVSLCARYPEKRFVPDGNRISW-DSKKGFTIPSYMISYAGMVFCEAKIN 86

Query: 135 HGTDETNCVVIVESEEESKE 154
             + ++   ++V       +
Sbjct: 87  DESYQSIMYIVVVVGYRIYD 106

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 20/88 (22%), Positives = 34/88 (38%), Gaps = 10/88 (11%)

Query: 65  RPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL----SKRDYSMSYSDGVVSMEIID 118
            PR + +   +  +L C     P  +VKW   N  +    S+       +DG  ++    
Sbjct: 358 APRDLNISEGRMAELKC--RTPPMSSVKWLLPNGTVLSHASRHPRISVLNDG--TLNFSH 413

Query: 119 CKPEDSGEYKCVATNKHGTDETNCVVIV 146
               D+G Y C+ TN  G    +  + V
Sbjct: 414 VLLSDTGVYTCMVTNVAGNSNASAYLNV 441

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 47.5 bits (113), Expect = 2e-07
 Identities = 16/94 (17%), Positives = 27/94 (28%), Gaps = 9/94 (9%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLC-CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGV 111
           TV               Q  +T  L C     KP   V +++  +         ++S   
Sbjct: 82  TVLFEW-LVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQ 140

Query: 112 VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
            +          SG+Y C     +    +  V I
Sbjct: 141 AN-------HSHSGDYHCTGNIGYTLFSSKPVTI 167

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 12/89 (13%)

Query: 56  SAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVV 112
           + P     L P  + V Q  +  L C  +  P   +++W+     +              
Sbjct: 1   APPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSY------ 54

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETN 141
                     DSGEY C       +D  +
Sbjct: 55  ---RFKANNNDSGEYTCQTGQTSLSDPVH 80

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 47.6 bits (113), Expect = 2e-07
 Identities = 16/70 (22%), Positives = 23/70 (32%), Gaps = 9/70 (12%)

Query: 78  LCCLS--GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH 135
           L C          V +YK    L        Y +   ++ I +   EDSG Y C      
Sbjct: 105 LRCHGWRNWDVYKVIYYKDGEALK-----YWYENH--NISITNATVEDSGTYYCTGKVWQ 157

Query: 136 GTDETNCVVI 145
              E+  + I
Sbjct: 158 LDYESEPLNI 167

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 42.2 bits (99), Expect = 1e-05
 Identities = 18/91 (19%), Positives = 34/91 (37%), Gaps = 12/91 (13%)

Query: 61  TFLLRPRVMQVRQ--TCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEII 117
              L P   ++ +     L C  +      + KW+       + + S++         I+
Sbjct: 6   KVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLN---------IV 56

Query: 118 DCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           + K EDSGEYKC     + ++     V  + 
Sbjct: 57  NAKFEDSGEYKCQHQQVNESEPVYLEVFSDW 87

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 46.5 bits (110), Expect = 4e-07
 Identities = 15/82 (18%), Positives = 25/82 (30%), Gaps = 10/82 (12%)

Query: 63  LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE 122
           + +P +        L C +       +K Y+G   L         S    +M        
Sbjct: 101 VSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR--------SLRQKTMSYQWT--N 150

Query: 123 DSGEYKCVATNKHGTDETNCVV 144
               +KC A N+   +    VV
Sbjct: 151 LRAPFKCKAVNRVSQESEMEVV 172

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 44.6 bits (105), Expect = 2e-06
 Identities = 15/78 (19%), Positives = 28/78 (35%), Gaps = 8/78 (10%)

Query: 82  SGKPPPTVKWYKGNRELS--KRDYSMSYSDGVV------SMEIIDCKPEDSGEYKCVATN 133
                  V+W +G+  ++  KR        G         ++I +   +DSG Y     +
Sbjct: 23  MTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYS 82

Query: 134 KHGTDETNCVVIVESEEE 151
            +GT   N  + +   E 
Sbjct: 83  TNGTRILNKALDLRILEM 100

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 45.4 bits (107), Expect = 5e-07
 Identities = 14/86 (16%), Positives = 36/86 (41%), Gaps = 10/86 (11%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNREL----------SKRDYSMSYSDGVVSMEIIDCKPE 122
           QT  L C  S +   +++W   +             + +   + +S   +S+ + +   +
Sbjct: 17  QTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQ 76

Query: 123 DSGEYKCVATNKHGTDETNCVVIVES 148
           D G YKC+  +   + +   V+++ +
Sbjct: 77  DEGVYKCLHYSDSVSTKEVKVIVLAT 102

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 46.5 bits (110), Expect = 5e-07
 Identities = 11/98 (11%), Positives = 29/98 (29%), Gaps = 4/98 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY---SD 109
            V +  N        V  V    +L C   G P   V W   + ++     + +     +
Sbjct: 112 KVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREE 171

Query: 110 GVVSMEI-IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            + ++   +      +  + C        +     +++
Sbjct: 172 KLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 44.7 bits (105), Expect = 8e-07
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 13/106 (12%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPP--TVKWYKGNREL---SKRDYSM 105
             +  P     ++P              C  +       T  W   N  L      +Y+ 
Sbjct: 4   VCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAH 63

Query: 106 SYSDGVVSME------IIDCKPEDSGEYKCVATNKHGTDETNCVVI 145
             + G   ME      + + +    G Y+CV +N  G+  +    +
Sbjct: 64  LRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXL 109

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 26/111 (23%)

Query: 62  FLLRPRVMQVR--QTCKLLCCLS---GKPPPTVKWYKGNRELSKRDYSMSYSDGV----- 111
             +    ++V   ++  + C +     K    V W     +    +Y + Y   +     
Sbjct: 8   LTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTG 67

Query: 112 ----------------VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                            S+ + D +  D G Y C    K+ +      V +
Sbjct: 68  RFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVEL 118

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 39.5 bits (91), Expect = 2e-04
 Identities = 14/103 (13%), Positives = 28/103 (27%), Gaps = 28/103 (27%)

Query: 76  KLLCCLSGKPPP---TVKWYKGNRELSKRDYSMSYSDGV--------------------- 111
           ++ C +          V W   +   ++ +  +SY   +                     
Sbjct: 137 QMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDI 196

Query: 112 ----VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
                S+++   K  D G Y C             V+ V  +E
Sbjct: 197 SRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE 239

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 44.5 bits (105), Expect = 2e-06
 Identities = 12/85 (14%), Positives = 24/85 (28%), Gaps = 8/85 (9%)

Query: 66  PRVMQVRQTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDS 124
             V +      L C          V + +  ++     ++  +        I     +DS
Sbjct: 97  RWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFH-------IPKATLKDS 149

Query: 125 GEYKCVATNKHGTDETNCVVIVESE 149
           G Y C          +  V I  ++
Sbjct: 150 GSYFCRGLVGSKNVSSETVNITITQ 174

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 42.6 bits (100), Expect = 1e-05
 Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 12/94 (12%)

Query: 54  VESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDG 110
            E  P     L P+   V +  +  L C  +  P   + +W+     +S +  S      
Sbjct: 2   TEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYF---- 57

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144
                I      DSGEY+C       +D     V
Sbjct: 58  -----IDAATVNDSGEYRCQTNLSTLSDPVQLEV 86

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 43.3 bits (102), Expect = 6e-06
 Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 10/82 (12%)

Query: 63  LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPE 122
           + +P +        L C +       +K Y+G   L       S     +S +  +    
Sbjct: 106 VSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLR------SLRQKTMSYQWTN---- 155

Query: 123 DSGEYKCVATNKHGTDETNCVV 144
               +KC A N+   +    VV
Sbjct: 156 LRAPFKCKAVNRVSQESEMEVV 177

>2jtd_A Myomesin-1, skelemin; immunoglobulin domain, muscle protein, thick filament, immune system, cell adhesion; NMR {Mus musculus} Length = 142

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 14/77 (18%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 85  PPPTVKWYKGNRELSKRD-YSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
               V +    +E+ +   Y M    + G++ M +   + ED G Y     +   T  + 
Sbjct: 66  SNAKVSYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQIQDGKATGHST 125

Query: 142 CVVIVESEEESKEQQEL 158
            V+I +  ++ +++ E 
Sbjct: 126 LVLIGDVYKKLQKEAEF 142

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 42.0 bits (98), Expect = 2e-05
 Identities = 14/113 (12%), Positives = 35/113 (30%), Gaps = 5/113 (4%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYK--GNRELSKRDYSMSYSD 109
            ++ A   + L             L C  +G  P P ++W    G    +     ++   
Sbjct: 114 ELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGV 173

Query: 110 GVVSME-IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHN 161
           G+ ++   +  +        C   +     E    + + ++   +  Q   H+
Sbjct: 174 GLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISI-ADPFFRSAQHHHHH 225

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 41.3 bits (96), Expect = 2e-05
 Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 10/85 (11%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNREL----------SKRDYSMSYSDGVVSMEIIDCKPE 122
            T  L C +      +++W    ++             R   ++ +   +S+ I +    
Sbjct: 54  GTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALA 113

Query: 123 DSGEYKCVATNKHGTDETNCVVIVE 147
           D GEY C           + V ++ 
Sbjct: 114 DEGEYTCSIFTMPVRTAKSLVTVLG 138

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 8/64 (12%), Positives = 17/64 (26%), Gaps = 7/64 (10%)

Query: 82  SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
                  V + +  +      ++  +     +        +DSG Y C          + 
Sbjct: 114 KNTALHKVTYLQNGKGRKYFHHNSDFYIPKAT-------LKDSGSYFCRGLVGSKNVSSE 166

Query: 142 CVVI 145
            V I
Sbjct: 167 TVQI 170

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 12/94 (12%)

Query: 54  VESAPNFTFLLRPRVMQVRQ--TCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDG 110
            E  P     L P+  +V +  +  L C  +  P   + +W+     +S +  S      
Sbjct: 2   TEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYF---- 57

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV 144
                I     +DSGEY+C       +D     V
Sbjct: 58  -----IDAATVDDSGEYRCQTQLSTLSDPVQLEV 86

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 40.7 bits (95), Expect = 4e-05
 Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 12/81 (14%)

Query: 65  RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPED 123
           +P +        L C +       +K Y+G   L S R  +MSY                
Sbjct: 98  KPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLRQKTMSYQWT-----------NL 146

Query: 124 SGEYKCVATNKHGTDETNCVV 144
              +KC A N+   +    VV
Sbjct: 147 RAPFKCKAVNRVSQESEMEVV 167

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 40.3 bits (94), Expect = 6e-05
 Identities = 16/80 (20%), Positives = 27/80 (33%), Gaps = 11/80 (13%)

Query: 78  LCCLSGKPPPTVKWYKGNREL-----SKRDYSMSYSDGVV------SMEIIDCKPEDSGE 126
               S  P   V W K   ++     S+     S+ + V       S+ I +    D  E
Sbjct: 15  FHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDE 74

Query: 127 YKCVATNKHGTDETNCVVIV 146
           Y+  + N   T +    V+ 
Sbjct: 75  YEMESPNITDTMKFFLYVLE 94

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 39.5 bits (92), Expect = 5e-05
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 11/84 (13%)

Query: 73  QTCKLLCCLSGKPPPTVKWYK---------GNRELSKRDYSMSYSD-GVVSMEIIDCKPE 122
            T  L C +      +++W             + L      +  +    +S+ + D    
Sbjct: 22  GTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLS 81

Query: 123 DSGEYKCVATNKHGTDETNCVVIV 146
           D G+Y C          +   + V
Sbjct: 82  DEGQYTCSL-FTMPVKTSKAYLTV 104

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A* Length = 663

 Score = 41.3 bits (95), Expect = 7e-05
 Identities = 20/117 (17%), Positives = 34/117 (29%), Gaps = 7/117 (5%)

Query: 37  QQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR 96
           Q       L      +            R    +   T +L C         V W   N 
Sbjct: 513 QTESPSRGLIQEMSGDASVCPDKSKGSYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNG 571

Query: 97  EL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
            L      Y +     ++   I +    DSG Y+C++      ++T   V+ +   E
Sbjct: 572 VLKAESPKYGLMGRKNLL---IFNLSEGDSGVYQCLSEE-RVKNKTVFQVVAKHVLE 624

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 112

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 13/109 (11%), Positives = 29/109 (26%), Gaps = 20/109 (18%)

Query: 53  TVESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD-------- 102
           +  S+     +     +QV   +       LS        W+    EL   +        
Sbjct: 2   SSGSSGTARLVAGLEDVQVYDGEDAVFSLDLSTIIQ--GTWFLNGEELKSNEPEGQVEPG 59

Query: 103 ---YSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETNCVVIVE 147
              Y +        + +   K +DSG              + +  + ++
Sbjct: 60  ALRYRIEQKGLQHRLILHAVKHQDSGALVGFSCPGV----QDSAALTIQ 104

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 7/102 (6%)

Query: 52  ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKRDYSMSYS 108
           +T         L+ PRV++V     ++C L G  P     V    G++ L+        +
Sbjct: 183 QTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--VTYGN 240

Query: 109 DGVVSMEIIDCKPEDSGEYK--CVATNKHGTDETNCVVIVES 148
           D   +   +    ED G  +  C     + + ET   V + S
Sbjct: 241 DSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYS 282

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 38.7 bits (89), Expect = 4e-04
 Identities = 16/96 (16%), Positives = 26/96 (27%), Gaps = 8/96 (8%)

Query: 51  QETVESAP-NFTFLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKRDYSMS 106
             TV   P        P    V +   L C + G  P    TV   +G +EL +      
Sbjct: 79  FLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV-- 136

Query: 107 YSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDETN 141
             +       +  + +  G  + C            
Sbjct: 137 -GEPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLE 171

>3nvq_A Semaphorin-7A; beta-propeller, signaling, signaling protein-protein binding; HET: NAG NDG; 2.40A {Homo sapiens} Length = 590

 Score = 39.6 bits (91), Expect = 2e-04
 Identities = 11/87 (12%), Positives = 18/87 (20%), Gaps = 2/87 (2%)

Query: 48  TFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY 107
                     P        +V     +   L C       T  W         +     +
Sbjct: 490 PAEPHKECPNPKPDKAPLQKVSLAPNSRYYLSCPMESRHATYSWRHKENVE--QSCEPGH 547

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNK 134
                 + I +   +  G Y C A   
Sbjct: 548 QSPNCILFIENLTAQQYGHYFCEAQEG 574

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 37.9 bits (87), Expect = 6e-04
 Identities = 15/74 (20%), Positives = 22/74 (29%), Gaps = 7/74 (9%)

Query: 74  TCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVAT 132
           +C L       PP T  W          + + S      S   +  +PED G    C   
Sbjct: 144 SCSLPGSCEAGPPLTFSWTGNALSPLDPETTRS------SELTLTPRPEDHGTNLTCQMK 197

Query: 133 NKHGTDETNCVVIV 146
            +     T   V +
Sbjct: 198 RQGAQVTTERTVQL 211

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 36.7 bits (84), Expect = 6e-04
 Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 7/71 (9%)

Query: 71  VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDC-KPEDSGEYKC 129
           V  TC         P   + W   ++ +   +   +       + + +  + E SG Y C
Sbjct: 24  VILTCPQ------YPGSEILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVC 77

Query: 130 VATNKHGTDET 140
                   D  
Sbjct: 78  YPRGSKPEDAN 88

>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane, disulfide bond, glycoprotein, immunoglobulin domain, membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A {Homo sapiens} Length = 589

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 5/65 (7%), Positives = 16/65 (24%), Gaps = 2/65 (3%)

Query: 82  SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN 141
                  + W   +  + K  Y++       S          + +  C        ++  
Sbjct: 35  FHVNANYIVWKTNHFTIPKEQYTIINRTA--SSVTFTDIASLNIQLTCNILTFGQLEQNV 92

Query: 142 CVVIV 146
             + +
Sbjct: 93  YGITI 97

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.87
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.84
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.81
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.8
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.78
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.78
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.78
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.77
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.77
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.76
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.76
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.76
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.75
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.75
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.75
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.74
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.73
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.73
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.73
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.73
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.72
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.72
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.72
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.7
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.69
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.69
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.68
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.68
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.67
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.67
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.67
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.66
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.66
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.66
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.66
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.65
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.65
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.65
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.65
1he7_A	126	High affinity nerve growth factor receptor; transf	99.65
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.65
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.64
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.64
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.64
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.64
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.64
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.63
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.63
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.63
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.62
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.62
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.62
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.62
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.62
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.62
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.62
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	99.61
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.61
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.61
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.61
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.61
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.61
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.6
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.6
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.6
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.6
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.6
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.6
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.59
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.59
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.59
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.59
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.58
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.58
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.58
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.58
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.58
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.58
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.58
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.58
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.58
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.58
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.58
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.58
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.57
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.57
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.57
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.57
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.57
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.57
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.56
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.56
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.56
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.56
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.56
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.56
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.56
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.56
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.55
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.55
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.55
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.55
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.55
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.55
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.55
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.55
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.55
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.55
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.54
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.54
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.54
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.54
2ens_A	96	Advanced glycosylation END product-specific recept	99.54
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.53
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.53
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.53
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.53
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.52
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.51
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.51
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.5
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.49
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.49
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.49
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.49
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.49
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.49
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.48
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.48
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.48
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.48
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.47
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.47
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.47
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.47
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.47
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.47
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.47
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.47
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.47
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.46
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.46
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.46
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.46
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.46
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.46
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.46
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.46
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.45
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.45
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.44
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.43
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.43
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.43
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.43
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.43
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.43
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.43
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.42
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.42
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.42
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.42
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.41
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.41
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.41
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.41
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.41
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.41
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.4
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.4
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.4
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.4
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.39
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.39
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.39
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.39
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.39
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.39
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.38
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.38
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.38
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.37
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.37
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.37
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.37
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.37
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.37
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.37
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.37
3khq_A	133	B-cell antigen receptor complex-associated protei	99.36
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.36
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.35
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.35
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.35
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.35
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.35
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.34
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.34
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.34
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.34
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.34
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.34
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.34
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.34
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.34
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.34
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.33
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.33
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.33
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.32
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.31
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.31
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.31
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.31
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.31
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.31
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.3
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.3
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.29
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.29
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.29
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.29
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.29
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.28
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	99.28
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.28
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.27
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.27
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.27
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.27
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.26
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.26
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.26
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.26
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.26
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.25
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.25
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.25
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.25
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.25
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.24
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.23
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.23
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.23
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.23
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.23
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.23
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.23
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.23
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.23
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.22
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.22
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.22
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.22
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	99.21
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.21
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.21
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.21
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.21
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.21
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.21
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.21
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.2
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.2
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.2
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.2
2qsq_A	111	Carcinoembryonic antigen-related cell adhesion MO;	99.2
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.19
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.19
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.19
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.19
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	99.19
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.19
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.19
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.19
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.18
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.18
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.18
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.18
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.18
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.18
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.18
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.18
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.17
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.17
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.17
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.17
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.17
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.17
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	99.16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.16
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	99.16
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.15
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.15
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.15
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.15
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.15
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.15
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.15
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.15
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.15
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.14
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.14
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.14
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	99.14
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.14
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.14
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.13
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.13
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.12
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.12
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.12
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.12
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.12
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.12
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.12
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.11
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.11
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	99.11
1zox_A	113	CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid I	99.11
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.11
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	99.1
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.1
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.1
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.1
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.1
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	99.1
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.09
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.09
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.09
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.09
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.09
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.09
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.09
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.08
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.08
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.08
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.08
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.08
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.08
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.08
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	99.08
3rrq_A	129	Protein PD-1, programmed cell death protein 1; pro	99.08
1xt5_A	135	Variable region-containing chitin-binding protein	99.08
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	99.07
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.07
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.07
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	99.07
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.07
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.06
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.06
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.06
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.05
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.05
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.05
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.05
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.05
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.04
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	99.04
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.04
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.04
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	99.04
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.04
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.04
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.03
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.03
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.02
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.02
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.02
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	99.02
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.02
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.01
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.0
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.0
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.0
2aw2_A	120	B and T lymphocyte attenuator; IGI domain, IGG dom	99.0
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.0
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.0
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.0
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.0
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	99.0
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.0
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	99.0
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.99
3kg5_A	134	B-cell antigen receptor complex-associated protei	98.99
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	98.99
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	98.98
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.98
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	98.98
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	98.98
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	98.98
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	98.97
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	98.97
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	98.97
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.97
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.96
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.96
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.96
1nko_A	132	Sialic acid binding IG-like lectin 7; immunoglobul	98.95
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	98.94
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	98.94
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.94
2h32_A	126	Immunoglobulin IOTA chain; beta sheets, V and C-ty	98.94
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	98.94
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.94
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	98.94
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.94
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	98.94
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	98.94
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	98.48
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.94
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	98.94
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	98.93
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	98.93
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.93
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	98.93
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.93
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	98.93
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	98.92
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	98.92
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	98.92
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	98.91
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.91
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	98.91
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.91
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	98.91
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	98.9
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	98.9
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.9
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	98.9
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	98.9
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	98.89
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	98.89
3bp6_A	117	Programmed cell death protein 1; PD-1, PD-L2, comp	98.89
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	98.88
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.88
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.88
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.87
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	98.86
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	98.86
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	98.86
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.86
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	98.85
1olz_A	663	Semaphorin 4D; developmental protein, CD100, beta-	98.85
3bik_B	134	Programmed cell death protein 1; CO-stimulation, r	98.84
2nms_A	124	CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP4	98.84
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	98.83
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	98.83
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	98.83
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	98.82
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.82
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.82
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.81
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	98.81
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.81
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.81
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	98.81
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	98.8
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	98.8
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	98.8
2otu_A	115	FV light chain variable domain; antibody FV polygl	98.79
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	98.79
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	98.79
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	98.79
2qhl_A	111	Novel immune-type receptor 10; immunoglobulin vari	98.79
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	98.79
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	98.78
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	98.78
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	98.78
1c5d_H	215	Monoclonal antibody against the main immunogenic t	98.77
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	98.77
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	98.77
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	98.77
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	98.77
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	98.76
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	98.76
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	98.75
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	98.75
2hp4_A	114	T-cell surface glycoprotein CD8 alpha chain; CO-re	98.75
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	98.75
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	98.74
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	98.74
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	98.73
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.73
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	98.72
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	98.72
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	98.71
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	98.71
1p4b_L	135	Antibody variable light chain; FV antibody, antige	98.71
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	98.69
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	98.68
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.67
3noi_A	120	Natural cytotoxicity triggering receptor 3; immune	98.66
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.66
4esk_A	102	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.65
4ety_A	118	LAIR-1, mlair1, leukocyte-associated immunoglobuli	98.64
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	98.64
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	98.63
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	98.63

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.87  E-value=6.5e-21  Score=118.45  Aligned_cols=96  Identities=28%  Similarity=0.478  Sum_probs=84.1

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+...++...|.|.++...|+|.|+|.|.|
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   90 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPADGAEHGLLLTAALPTDAGVYVCRARN   90 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEeecCceEEEEEecCChhhCEEEEEEEEE
Confidence            46899999999999999999999999999999999999999998763 44444556667899999999999999999999


Q ss_pred             CCcceEEEEEEEEeeCC
Q psy12421        134 KHGTDETNCVVIVESEE  150 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p  150 (168)
                      ..|....++.|.|.++|
T Consensus        91 ~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           91 AAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             TTEEEEEEEEEEEEC--
T ss_pred             CCCEEEEEEEEEEEcCC
Confidence            99999999999998764

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.84  E-value=1.1e-19  Score=111.44  Aligned_cols=94  Identities=21%  Similarity=0.486  Sum_probs=82.4

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ..||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...   ++.+...++..+|.|.++...|+|.|+|.|
T Consensus         3 ~~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   82 (100)
T 3knb_A            3 GIPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIENTDDLTTLIIMDVQKQDGGLYTLSL   82 (100)
T ss_dssp             CEEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEECSSEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeecccceEEEEEcCCCccCCEEEEEEE
Confidence            35788888888899999999999999999999999999999998653   355555666778999999999999999999


Q ss_pred             EeCCcceEEEEEEEEee
Q psy12421        132 TNKHGTDETNCVVIVES  148 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~  148 (168)
                      .|..|....++.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           83 GNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999999998864

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.81  E-value=1.2e-18  Score=109.05  Aligned_cols=101  Identities=17%  Similarity=0.343  Sum_probs=86.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+........|.|.++...|+|.|+|.|.|.
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   85 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENK   85 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECS
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEEcCCEEEEEECCCChhcCEEEEEEEEEC
Confidence            578888888889999999999999999999999999999988765 3455554455668999999999999999999999


Q ss_pred             CcceEEEEEEEEeeCCCchhhh
Q psy12421        135 HGTDETNCVVIVESEEESKEQQ  156 (168)
Q Consensus       135 ~g~~~~~~~l~v~~~p~~~~~~  156 (168)
                      .|.....+.|.|.+.|.++..+
T Consensus        86 ~g~~~~~~~l~V~~~p~~P~~p  107 (114)
T 2cqv_A           86 LGSRQAQVNLTVVDKPDPPAGT  107 (114)
T ss_dssp             SCEEECCEEEEEECSCSCCCCC
T ss_pred             CCcEEEEEEEEEECCCCCCCCC
Confidence            9999999999999887766543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.80  E-value=4.5e-18  Score=104.46  Aligned_cols=96  Identities=29%  Similarity=0.588  Sum_probs=83.8

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      +..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+....+...|.|.++...|+|.|.|.|.
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~   84 (103)
T 3qp3_A            5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTNTSGVLTLEILDCHTDDSGTYRAVCT   84 (103)
T ss_dssp             TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEECCCEEEEEEcCCCcccCEEEEEEEE
Confidence            34578898888899999999999999999999999999999998865 34555555666789999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeC
Q psy12421        133 NKHGTDETNCVVIVESE  149 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~  149 (168)
                      |..|.....+.|.|...
T Consensus        85 N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           85 NYKGEASDYATLDVTGG  101 (103)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             eCCCcEEEEEEEEEECC
Confidence            99999999999988754

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.78  E-value=7.6e-18  Score=106.08  Aligned_cols=98  Identities=21%  Similarity=0.319  Sum_probs=82.8

Q ss_pred             cccCCCeEEee---cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEE
Q psy12421         53 TVESAPNFTFL---LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        53 ~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      .+..+|.|...   .....+.+|+.+.|.|.+.|.|.|.+.|++++..+...+..+........|.|.++...|+|.|+|
T Consensus        17 ~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C   96 (118)
T 2e7c_A           17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYEL   96 (118)
T ss_dssp             CCSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCCSSCEEEECSSEEEEEESSCCTTTCEEEEE
T ss_pred             eeccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECCCCcEEEEECCCeEEEEECCCChhcCEEEEE
Confidence            34456777542   456789999999999999999999999999999987555555556666679999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeCC
Q psy12421        130 VATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       130 ~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      .|.|..|.....+.|.|.+.|
T Consensus        97 ~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           97 SVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEECSSCEECCEEEEEEECCC
T ss_pred             EEEeCCCeEEEEEEEEEEcCC
Confidence            999999999999999998765

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.78  E-value=1.5e-17  Score=101.26  Aligned_cols=93  Identities=23%  Similarity=0.374  Sum_probs=79.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eEE-EecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSM-SYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ... ....+...|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N   83 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEE
Confidence            46888888888999999999999999999999999999999887543 222 2245666899999999999999999999


Q ss_pred             CCcceEEEEEEEEee
Q psy12421        134 KHGTDETNCVVIVES  148 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~  148 (168)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           84 IAGETSSHAFLLVQA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEEEEEEEEEec
Confidence            999999888888864

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.77  E-value=2.5e-17  Score=100.28  Aligned_cols=94  Identities=24%  Similarity=0.476  Sum_probs=82.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+....+...|.|.++...|+|.|.|.|.|
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n   83 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSEDKGGFFLEIHKTDTSDSGLYTCTVKN   83 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEEeCCEEEEEECCCCcccCEEEEEEEEe
Confidence            4578888888889999999999999999999999999999998865 445555556666899999999999999999999


Q ss_pred             CCcceEEEEEEEEee
Q psy12421        134 KHGTDETNCVVIVES  148 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~  148 (168)
                      ..|.....+.|.|..
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           84 SAGSVSSSCKLTIKA   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCcEeEEEEEEEEe
Confidence            999998888888763

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.77  E-value=1.9e-17  Score=100.89  Aligned_cols=93  Identities=20%  Similarity=0.451  Sum_probs=79.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....  +.....++...|.|.++...|+|.|+|.|.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N   83 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVN   83 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEE
Confidence            47888888888999999999999999999999999999999886532  3333345556799999999999999999999


Q ss_pred             CCcceEEEEEEEEee
Q psy12421        134 KHGTDETNCVVIVES  148 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~  148 (168)
                      ..|.....+.|.|.+
T Consensus        84 ~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           84 EYGARQCEARLEVRG   98 (99)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEC
Confidence            999998888888864

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.76  E-value=6.9e-18  Score=101.86  Aligned_cols=89  Identities=28%  Similarity=0.352  Sum_probs=75.8

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++  ..+.... ..........|.|.++...|+|.|+|.|.|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~   80 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPEL-LVDAKSSTTSIFFPSAKRADSGNYKLKVKNE   80 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTS-EEEEETTEEEEECTTBCGGGCEEEEEEEEET
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcE-EEEecCCEEEEEECCCChhcCEEEEEEEEcC
Confidence            577776777788999999999999999999999999999  7776543 3334455568999999999999999999999


Q ss_pred             CcceEEEEEEEE
Q psy12421        135 HGTDETNCVVIV  146 (168)
Q Consensus       135 ~g~~~~~~~l~v  146 (168)
                      .|.....+.|.|
T Consensus        81 ~G~~~~~~~l~V   92 (93)
T 1wit_A           81 LGEDEAIFEVIV   92 (93)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCeEEEEEEEEE
Confidence            999888888876

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.76  E-value=1.5e-17  Score=101.50  Aligned_cols=94  Identities=24%  Similarity=0.455  Sum_probs=79.5

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....  .......+...|.|.++...|+|.|+|.|.|
T Consensus         4 ~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n   83 (100)
T 2kdg_A            4 GPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKN   83 (100)
T ss_dssp             EEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEc
Confidence            46777777788899999999999999999999999999998876532  2333455556899999999999999999999


Q ss_pred             CCcceEEEEEEEEeeC
Q psy12421        134 KHGTDETNCVVIVESE  149 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~  149 (168)
                      ..|.....+.|.|...
T Consensus        84 ~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           84 RAGEATFTVQLDVLAK   99 (100)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEec
Confidence            9999999999988754

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.76  E-value=2.9e-17  Score=108.19  Aligned_cols=103  Identities=23%  Similarity=0.475  Sum_probs=84.2

Q ss_pred             ecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEe-cCCEEEEEEccCCCCCCeEEEE
Q psy12421         52 ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSY-SDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        52 ~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      ..+..+|.|...+....+..|+.+.|.|.+.|.|.|.+.|++++..+... ++.+.. ..+...|.|.++...|+|.|+|
T Consensus        36 ~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  115 (154)
T 1fhg_A           36 EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTC  115 (154)
T ss_dssp             CCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEE
T ss_pred             ccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEE
Confidence            34556899998888999999999999999999999999999999988664 333332 3445689999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeCCCchh
Q psy12421        130 VATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus       130 ~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      .|.|..|.....+.|.|..+|....
T Consensus       116 ~a~N~~G~~~~~~~l~V~~~p~~~~  140 (154)
T 1fhg_A          116 KAVNSLGEATCTAELLVETMGKEGE  140 (154)
T ss_dssp             EEEETTEEEEEEEEEEEECC-----
T ss_pred             EEEECCCeEEEEEEEEEeCcCcCCC
Confidence            9999999999999999988775544

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.75  E-value=1.2e-17  Score=103.78  Aligned_cols=99  Identities=22%  Similarity=0.484  Sum_probs=83.8

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEec-CCEEEEEEccCCCCCCeEEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+..  .++.+... ++...|.|.++...|+|.|+|.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a   85 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMA   85 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEE
Confidence            4578888888888999999999999999999999999999988764  33444333 45567999999999999999999


Q ss_pred             EeCCcceEEEEEEEEeeCCCch
Q psy12421        132 TNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      .|..|.....+.|.|...+..+
T Consensus        86 ~N~~g~~~~~~~l~V~~~~~~P  107 (110)
T 2dm2_A           86 ANPQGRISCTGRLMVQAVNSGP  107 (110)
T ss_dssp             ECTTCCEEECCCEEEECCSCCS
T ss_pred             EECCCeEEEEEEEEEECCCCCC
Confidence            9999999888999998877654

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.75  E-value=2.4e-17  Score=100.70  Aligned_cols=94  Identities=23%  Similarity=0.397  Sum_probs=79.3

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.. ........++  .|.|.++...|+|.|+|.|.|
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~n   83 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQG--TLQIKNLRISDTGTYTCVATS   83 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEECTTC--CEEEESCCTTTCCEEEEEEEC
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEcCCC--EEEEccCCcccCEEEEEEEEc
Confidence            4688998888889999999999999999999999999999987763 2222233344  699999999999999999999


Q ss_pred             CCcceEEEEEEEEeeCC
Q psy12421        134 KHGTDETNCVVIVESEE  150 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p  150 (168)
                      ..|.....+.|.|.++|
T Consensus        84 ~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           84 SSGETSWSAVLDVTESG  100 (100)
T ss_dssp             SSCCCBCCEEEEEESCC
T ss_pred             CCCCEEEEEEEEEecCC
Confidence            99999889999887654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.75  E-value=3.7e-17  Score=102.76  Aligned_cols=99  Identities=25%  Similarity=0.416  Sum_probs=84.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEec-CCEEEEEEccCCCCCCeEEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYS-DGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..  .++.+... .+...|.|.++...|+|.|+|.|
T Consensus        13 ~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   92 (116)
T 2kkq_A           13 KRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSA   92 (116)
T ss_dssp             CBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEE
T ss_pred             CCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEE
Confidence            4578888888999999999999999999999999999999998864  34444333 34557999999999999999999


Q ss_pred             EeCCcceEEEEEEEEeeCCCch
Q psy12421        132 TNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      .|..|.....+.|.|..+|..+
T Consensus        93 ~N~~G~~~~~~~l~V~~~p~~~  114 (116)
T 2kkq_A           93 VNEAGVTTCNTRLDVTARPNQT  114 (116)
T ss_dssp             EETTEEEEEEEEEEEECCSCCC
T ss_pred             EcCCCeEEEEEEEEEeCCCCCC
Confidence            9999999999999998876543

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.73  E-value=1.5e-17  Score=101.37  Aligned_cols=91  Identities=30%  Similarity=0.546  Sum_probs=77.5

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      +..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.......  ..+...|.|.++...|+|.|.|.|.|
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~--~~~~~~L~i~~v~~~D~G~Y~C~a~N   85 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTC--EAGVAELHIQDALPEDHGTYTCLAEN   85 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEE--ETTEEEEEECSCCTTCCBCEEEEEEC
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEe--eCCeEEEEECCCChhhCEEEEEEEEE
Confidence            3467888888888999999999999999999999999999998776544322  34455899999999999999999999


Q ss_pred             CCcceEEEEEEEE
Q psy12421        134 KHGTDETNCVVIV  146 (168)
Q Consensus       134 ~~g~~~~~~~l~v  146 (168)
                      ..|.....+.|.|
T Consensus        86 ~~g~~~~~~~l~V   98 (99)
T 2yr3_A           86 ALGQVSCSAWVTV   98 (99)
T ss_dssp             SSCEEEEECCEEE
T ss_pred             CCCeEEEEEEEEE
Confidence            9999888877766

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=8.4e-18  Score=104.43  Aligned_cols=100  Identities=24%  Similarity=0.458  Sum_probs=84.3

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eE-EEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YS-MSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      ..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+.... .. ....++...|.|.++...|+|.|+|.|.
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   86 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIAT   86 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEE
Confidence            457899888888999999999999999999999999999998776532 22 2333445689999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeCCCchh
Q psy12421        133 NKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      |..|.....+.|.|..+|..+.
T Consensus        87 n~~g~~~~~~~l~V~~~p~~P~  108 (110)
T 2dm3_A           87 NRAGQNSFSLELVVAAKESGPS  108 (110)
T ss_dssp             CSSCEEEECCEEEEECCCCSSS
T ss_pred             CCCCEEEEEEEEEEeCCCCCCC
Confidence            9999999999999988776653

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=1e-17  Score=105.45  Aligned_cols=109  Identities=21%  Similarity=0.320  Sum_probs=87.2

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      ..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..  .++. ...++  .|.|.++..+|+|.|+|.|.
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~-~~~~~--~L~i~~v~~~D~G~Y~C~a~   82 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIK-QLENG--VLQIRYAKLGDTGRYTCIAS   82 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEE-EEETT--EEEEESCCGGGCCCEEEEEE
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEE-EccCC--EEEEccCCcCCCEEEEEEEE
Confidence            4578888888889999999999999999999999999999987753  2333 23455  79999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeCCCchhhhhhhhhcccCC
Q psy12421        133 NKHGTDETNCVVIVESEEESKEQQELAHNFLYSG  166 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g  166 (168)
                      |..|.....+.|.|...+.+........-.+.+|
T Consensus        83 n~~g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G  116 (118)
T 2eo9_A           83 TPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS  116 (118)
T ss_dssp             CSSCEEEEECCEEEECCSCCCCCCCCCCCCCCCC
T ss_pred             cCCCcEEEEEEEEEEeCCCCccCCCCCCCccCCC
Confidence            9999998889999987765544444444444444

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.73  E-value=3.3e-17  Score=100.39  Aligned_cols=93  Identities=16%  Similarity=0.180  Sum_probs=78.8

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+.+..+.+|+++.|.|.+  .|.|.+.|+|+|..+.. .++.+...+..+.|.|.++..+|+|.|+|.|.|
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~N   82 (100)
T 2yuz_A            5 SSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQKGRIHKLVIANALTEDEGDYVFAPDA   82 (100)
T ss_dssp             SCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEECSSEEEEEESSCCGGGCSEEEEEESS
T ss_pred             CCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEEeCCEEEEEECCCChhhCEEEEEEEcC
Confidence            346788888889999999999999999  79999999999999865 445555556667899999999999999999999


Q ss_pred             CCcceEEEEEEEEeeCCC
Q psy12421        134 KHGTDETNCVVIVESEEE  151 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~  151 (168)
                      .  ....++.|.|.++|.
T Consensus        83 ~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           83 Y--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             S--CCCEEEEEEEECCSC
T ss_pred             C--CeeEEEEEEEeCCCC
Confidence            8  556778888888765

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.72  E-value=5e-16  Score=94.27  Aligned_cols=90  Identities=26%  Similarity=0.484  Sum_probs=76.3

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      +...+.+..+.+|+.+.|.|.+.|. |.|.+.|++++..+.. .++.+...++...|.|.++...|+|.|.|.|.|..|.
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~   83 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYEDGVAILYVKDITKLDDGTYRCKVVNDYGE   83 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEcCCeEEEEEecCChhhCeEEEEEEECCCCe
Confidence            3445667889999999999999997 9999999999998865 3455545666678999999999999999999999999


Q ss_pred             eEEEEEEEEeeC
Q psy12421        138 DETNCVVIVESE  149 (168)
Q Consensus       138 ~~~~~~l~v~~~  149 (168)
                      ....+.|.|.+.
T Consensus        84 ~~~~~~l~V~~~   95 (97)
T 2bk8_A           84 DSSYAELFVKGV   95 (97)
T ss_dssp             EEEEEEEEETTT
T ss_pred             EeEEEEEEEEec
Confidence            999888888653

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.72  E-value=2.8e-16  Score=94.93  Aligned_cols=89  Identities=17%  Similarity=0.146  Sum_probs=73.8

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+.+..+.+|+++.|.|.+.+ +.|.+.|+|+|..+.. .++.+...+..+.|.|.++..+|+|.|+|.|.|
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~~g~~~~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAAN   81 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEETT
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEEECCEEEEEECCCChhhCEEEEEEECC
Confidence            35788888999999999999999999976 5688999999999865 455555566667899999999999999999987


Q ss_pred             CCcceEEEEEEEEee
Q psy12421        134 KHGTDETNCVVIVES  148 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~  148 (168)
                      .    ..++.|.|.+
T Consensus        82 ~----~~sa~L~V~~   92 (93)
T 1waa_A           82 T----KSAANLKVKE   92 (93)
T ss_dssp             E----EEEEEEEEEC
T ss_pred             C----cEEEEEEEEc
Confidence            4    4566777754

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.72  E-value=3e-17  Score=101.55  Aligned_cols=97  Identities=26%  Similarity=0.520  Sum_probs=69.2

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ........+  .|.|.++..+|+|.|.|.|.|
T Consensus         8 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~n   85 (108)
T 3kvq_A            8 RVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNR--NLTIRRVRKEDEGLYTCQACS   85 (108)
T ss_dssp             ---CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEETTTT--EEEECSCCGGGCEEEEEEEC-
T ss_pred             cCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEeCCCc--EEEEeecCcccCEEEEEEEEe
Confidence            45788887888899999999999999999999999999999877653 333332333  799999999999999999999


Q ss_pred             CCcceEEEEEEEEeeCCCch
Q psy12421        134 KHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~~~  153 (168)
                      ..|.....+.|.|...+..+
T Consensus        86 ~~g~~~~~~~l~V~~~~~~~  105 (108)
T 3kvq_A           86 VLGCAKVEAFFIIEGAQEKT  105 (108)
T ss_dssp             ---CEEEEEEEEEEC-----
T ss_pred             CCCceEEEEEEEEeCCCccc
Confidence            99999999999998876544

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.70  E-value=5e-17  Score=100.55  Aligned_cols=94  Identities=21%  Similarity=0.385  Sum_probs=80.7

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      ...+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+........|.|.++...|+|.|+|.|.
T Consensus        11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   90 (106)
T 1nct_A           11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVE   90 (106)
T ss_dssp             SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEECSSEEEEEECCCCSSCCSEEEECCB
T ss_pred             CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEECCCEEEEEECcCCchhCEEEEEEEE
Confidence            34678898899999999999999999999999999999999987754 34455444455689999999999999999999


Q ss_pred             eCCcceEEEEEEEEe
Q psy12421        133 NKHGTDETNCVVIVE  147 (168)
Q Consensus       133 n~~g~~~~~~~l~v~  147 (168)
                      |..|....++.|.|.
T Consensus        91 N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           91 NSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             CSSCBCCEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEE
Confidence            999998888888774

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.69  E-value=1.6e-15  Score=102.45  Aligned_cols=126  Identities=22%  Similarity=0.269  Sum_probs=94.2

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe--
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK--   93 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~--   93 (168)
                      .+.+.++...|.|.  |.   +.+.+. ..........+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++  
T Consensus        57 ~L~i~~~~~~d~G~--Y~---C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~  130 (190)
T 2wv3_A           57 EYRINKPRAEDSGE--YH---CVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKE  130 (190)
T ss_dssp             EEEESSCCGGGCEE--EE---EEEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEE
T ss_pred             EEEEecCCcccCEE--EE---EEEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcC
Confidence            45566777777555  42   233332 22222333455678999888888889999999999999999999999999  


Q ss_pred             CCEECC----CCCeEEEecCCEEEEEEccCC-CCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         94 GNRELS----KRDYSMSYSDGVVSMEIIDCK-PEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        94 ~~~~~~----~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      ++..+.    ..++.+........|.|.++. ..|+|.|+|.|.|..|....++.|.|.
T Consensus       131 ~g~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          131 NGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             TTEEEECCCTTSCEEEEECSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCceeeeecCCCeEEEecCCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            777653    344555545555679999999 799999999999999999988888775

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.68  E-value=4.2e-16  Score=105.38  Aligned_cols=92  Identities=29%  Similarity=0.526  Sum_probs=78.7

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.. ..+.+...+....|.|.++...|+|.|+|.|.|.
T Consensus       102 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~  181 (194)
T 2a38_A          102 APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQEGDLYSLLIAEAYPEDSGTYSVNATNS  181 (194)
T ss_dssp             EEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEEETTEEEEEEEEECGGGCEEEEEEEEET
T ss_pred             CCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEEcCCEEEEEECCCChhcCeEEEEEEEeC
Confidence            577777777788899999999999999999999999999998865 3444555556667999999999999999999999


Q ss_pred             CcceEEEEEEEEe
Q psy12421        135 HGTDETNCVVIVE  147 (168)
Q Consensus       135 ~g~~~~~~~l~v~  147 (168)
                      .|.....+.|.|.
T Consensus       182 ~g~~~~~~~l~V~  194 (194)
T 2a38_A          182 VGRATSTAELLVQ  194 (194)
T ss_dssp             TEEEEEEEEEEEC
T ss_pred             CCceEEEEEEEEC
Confidence            9998888888763

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.68  E-value=3.2e-16  Score=96.42  Aligned_cols=81  Identities=16%  Similarity=0.317  Sum_probs=66.4

Q ss_pred             cCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeE-E--EecC-C--EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS-M--SYSD-G--VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-~--~~~~-~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      .+..+.|.|.+.|.|.|.+.|++++..+...... .  ...+ .  ...|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        15 ~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l   94 (103)
T 1wwb_X           15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             ECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEE
Confidence            5778999999999999999999999988765422 1  1111 1  2249999999999999999999999999999999


Q ss_pred             EEeeCCC
Q psy12421        145 IVESEEE  151 (168)
Q Consensus       145 ~v~~~p~  151 (168)
                      .|.+.|.
T Consensus        95 ~V~~~P~  101 (103)
T 1wwb_X           95 HFMGWPG  101 (103)
T ss_dssp             CCSCCCC
T ss_pred             EECCCCC
Confidence            9987764

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.67  E-value=5.8e-16  Score=93.72  Aligned_cols=88  Identities=22%  Similarity=0.397  Sum_probs=73.3

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ..+|.|...+....+.+|+.+.|.|.+.|.| |.+.|++++..+...... ...++  .|.|.++...|+|.|.|.|.|.
T Consensus         7 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~-~~~~~--~L~i~~~~~~D~G~Y~C~a~n~   82 (95)
T 2ckn_A            7 AQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRT-RITGE--EVEVRDSIPADSGLYACVTSSP   82 (95)
T ss_dssp             SCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSE-EECSS--EEEESSCCGGGSEEEEEEEEET
T ss_pred             CCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCE-EEeCC--EEEECCCChHHCEEEEEEeccC
Confidence            3567777778888999999999999999987 899999999887653322 22344  7999999999999999999999


Q ss_pred             CcceEEEEEEEE
Q psy12421        135 HGTDETNCVVIV  146 (168)
Q Consensus       135 ~g~~~~~~~l~v  146 (168)
                      .|.....+.|.|
T Consensus        83 ~g~~~~~~~l~V   94 (95)
T 2ckn_A           83 SGSDTTYFSVNV   94 (95)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEE
Confidence            999888887776

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=7e-16  Score=94.63  Aligned_cols=94  Identities=19%  Similarity=0.359  Sum_probs=78.4

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..||.|...+.+..+.+|+.+.|.|.+.+ |.+.+.|++++..+.. .++.+...+....|.|.++...|+|.|+|.|.|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (103)
T 2edf_A            6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVCEGTMAMLVIRGASLKDAGEYTCEVEA   84 (103)
T ss_dssp             CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEEETTEEEEEESSCCTTTCSEEEEECSS
T ss_pred             CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEECCCEEEEEECCCCcccCEEEEEEEcc
Confidence            45788888888899999999999999987 8889999999988755 345555555566899999999999999999998


Q ss_pred             CCcceEEEEEEEEeeCCCch
Q psy12421        134 KHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~~~  153 (168)
                          ....+.|.|..+|..+
T Consensus        85 ----~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           85 ----SKSTASLHVEEKASGP  100 (103)
T ss_dssp             ----CEEEEEEEECCCSSSS
T ss_pred             ----CCcEEEEEEeCCCCCC
Confidence                3677888888777654

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.67  E-value=8e-16  Score=114.86  Aligned_cols=125  Identities=22%  Similarity=0.304  Sum_probs=94.8

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN   95 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~   95 (168)
                      .|.+.++...|.|.  |   .+...+............+..+|.+...+.+..+..|+.+.|.|.+.|.|.|.+.|++++
T Consensus       259 ~L~I~~v~~~D~G~--Y---~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g  333 (384)
T 3kld_A          259 ILEIPNFQQEDAGS--Y---ECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNG  333 (384)
T ss_dssp             EEEECSCCGGGCEE--E---EEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETT
T ss_pred             EEEECCCChhhCEE--E---EEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECC
Confidence            45566777777555  3   233334333333333334456788888888889999999999999999999999999999


Q ss_pred             EECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421         96 RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      ..+....... ..++  .|.|.++..+|+|.|+|.|.|..|...+++.|.|..
T Consensus       334 ~~l~~~~~~~-~~~~--~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~~  383 (384)
T 3kld_A          334 DPLLTRDRIQ-IEQG--TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVIA  383 (384)
T ss_dssp             EECCCBTTEE-EETT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             EECCCCccEE-EeCC--EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEec
Confidence            9886533222 2445  799999999999999999999999999999998853

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.66  E-value=3.2e-16  Score=106.28  Aligned_cols=128  Identities=17%  Similarity=0.202  Sum_probs=88.1

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEE-----eecCCeEEecCCcEEEEEEEeccCCCeeE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFT-----FLLRPRVMQVRQTCKLLCCLSGKPPPTVK   90 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-----~~~~~~~~~~g~~~~l~C~~~g~p~p~i~   90 (168)
                      .+.+.++...|.+.  |.|.   +.+............+..+|.+.     ..+....+.+|+.+.|.|.+.|.|.|.+.
T Consensus        63 ~L~i~~~~~~d~G~--Y~C~---~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~  137 (197)
T 2j8h_A           63 QLIIASVTDDDATV--YQVR---ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVIT  137 (197)
T ss_dssp             EEEECSCCGGGCSE--EEEE---EEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEE
T ss_pred             EEEECcCCHHhCEE--EEEE---EEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEE
Confidence            46666777777665  4322   22222111121222222333332     22344678889999999999999999999


Q ss_pred             EEeCCEECCC-CCeEEEecCCEEEEEEcc-CCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421         91 WYKGNRELSK-RDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus        91 W~~~~~~~~~-~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      |++++..+.. .++.+........|.|.+ +...|+|.|+|.|.|..|.....+.|.|.+
T Consensus       138 W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~d  197 (197)
T 2j8h_A          138 WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVAD  197 (197)
T ss_dssp             EEESSCEECSSSSCEEEECSSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEECCEEeecCCCEEEEEcCCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEeC
Confidence            9999988754 344444455556899999 999999999999999999998888888753

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.66  E-value=2.1e-15  Score=118.02  Aligned_cols=131  Identities=22%  Similarity=0.322  Sum_probs=101.5

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      |.+.++...|.|.  |   .+...+............+..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       349 L~i~~v~~~D~G~--Y---~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~  423 (570)
T 3b43_A          349 LEMYNLSVEDSGD--Y---TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR  423 (570)
T ss_dssp             EEEESCCGGGCEE--E---EEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTE
T ss_pred             EEECCCCcccCEE--E---EEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCE
Confidence            4455666677554  4   3344444443333344566778999888888889999999999999999999999999999


Q ss_pred             ECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421         97 ELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus        97 ~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      .+.. .++.+...+....|.|.++...|+|.|+|.|.|..|.....+.|.|..+|..
T Consensus       424 ~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~  480 (570)
T 3b43_A          424 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRF  480 (570)
T ss_dssp             ECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEE
T ss_pred             ECcCCCCEEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcc
Confidence            8865 3455555555568999999999999999999999999999999998876643

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.66  E-value=9.5e-16  Score=90.85  Aligned_cols=80  Identities=25%  Similarity=0.410  Sum_probs=65.3

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      +.+..+.+|+.+.|.|.+.+ |.|.+.|+|+|..+.. .++.+...++...|.|.++...|+|.|+|.|    |....++
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a----~n~~~~a   77 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQAGARQVLRVQGARSGDAGEYLCDA----PQDSRIF   77 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEECSSCEEEEESSCSSTTCEEEEEEC----TTTCEEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEeecCCeEEEEecCCCCcccEEEEEEE----CCEEEEE
Confidence            34577889999999999866 9999999999999876 4455555666678999999999999999987    4456677


Q ss_pred             EEEEee
Q psy12421        143 VVIVES  148 (168)
Q Consensus       143 ~l~v~~  148 (168)
                      .|.|.+
T Consensus        78 ~l~V~e   83 (84)
T 2lu7_A           78 LVSVEE   83 (84)
T ss_dssp             EEEECC
T ss_pred             EEEEEC
Confidence            787765

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.66  E-value=1.2e-15  Score=93.59  Aligned_cols=91  Identities=19%  Similarity=0.281  Sum_probs=74.4

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      |+.|...+.+..+.+|+++.|.|.+.+ |.+.+.|++++..+...   ++.+...+....|.|.++..+|+|.|+|.|.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n   85 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG   85 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEEcCCEEEEEECCCCcccCEEEEEEECC
Confidence            344777788889999999999999988 77999999999988653   44555555666899999999999999999987


Q ss_pred             CCcceEEEEEEEEeeCCCc
Q psy12421        134 KHGTDETNCVVIVESEEES  152 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~~  152 (168)
                          ....+.|.|...|.+
T Consensus        86 ----~~~~~~l~V~~~p~p  100 (103)
T 1x44_A           86 ----GQSSAKLSVDLKSGP  100 (103)
T ss_dssp             ----EEEEEEEEEECCCSC
T ss_pred             ----CcEEEEEEEeCCCCC
Confidence                566778888877654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.65  E-value=2.5e-15  Score=103.25  Aligned_cols=95  Identities=28%  Similarity=0.520  Sum_probs=76.6

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      |.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+..........++  .|.|.++...|+|.|+|.|.|..|.
T Consensus       111 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~  188 (212)
T 2yd1_A          111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKDG--FLQIENSREEDQGKYECVAENSMGT  188 (212)
T ss_dssp             CEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEEETT--EEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             CeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEccCC--eEEEccCChhhCEEEEEEeecCCCc
Confidence            78887787888999999999999999999999999999988653222233455  7999999999999999999999999


Q ss_pred             eEEE-EEEEEeeCCCchh
Q psy12421        138 DETN-CVVIVESEEESKE  154 (168)
Q Consensus       138 ~~~~-~~l~v~~~p~~~~  154 (168)
                      .... +.|.|......+.
T Consensus       189 ~~s~~~~l~V~~~~~~~~  206 (212)
T 2yd1_A          189 EHSKATNLYVKVRRVGTK  206 (212)
T ss_dssp             EECCCEEEEEEC---C--
T ss_pred             eeEEEEEEEEEecccccc
Confidence            8765 7899987765544

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.65  E-value=1.7e-15  Score=108.15  Aligned_cols=126  Identities=22%  Similarity=0.321  Sum_probs=93.6

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      +.+.++...|.+.  |   .+.+.+............+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       157 L~i~~~~~~d~G~--Y---~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~~~  231 (284)
T 2rik_A          157 LEMYNLSVEDSGD--Y---TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKR  231 (284)
T ss_dssp             EEECSCCGGGCEE--E---EEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEETTE
T ss_pred             EEECCCCcccCEE--E---EEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEECCE
Confidence            3344555556443  3   2233333332223333455567888777777889999999999999999999999999999


Q ss_pred             ECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         97 ELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        97 ~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      .+.. ..+.+...+....|.|.++...|+|.|+|.|.|..|.....+.|.|.
T Consensus       232 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          232 ELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             EECBTTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ECcCCCCEEEEEcCCEEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            8765 34555555556689999999999999999999999999999888875

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.65  E-value=1.4e-15  Score=93.37  Aligned_cols=93  Identities=19%  Similarity=0.312  Sum_probs=74.6

Q ss_pred             CCCeEEeecCC---eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         56 SAPNFTFLLRP---RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        56 ~~p~~~~~~~~---~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      .+|.+...+..   ..+.+|+.+.|.|.+.+.|.+ +.|++++..+.. .++.+...+....|.|.++...|+|.|+|.+
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   84 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKMDGRKHRLILPEAKVQDSGEFECRT   84 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEEETTEEEEEESSCCTTTCEEEEEEC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEeCCCEEEEEECCCChhhCEEEEEEE
Confidence            45666666666   688999999999999999999 999999998865 3455555566668999999999999999999


Q ss_pred             EeCCcceEEEEEEEEeeCCCch
Q psy12421        132 TNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      .|..+    .+.|.|.++|.++
T Consensus        85 ~n~~~----~~~l~V~~~P~pp  102 (104)
T 2e6p_A           85 EGVSA----FFGVTVQDPSGPS  102 (104)
T ss_dssp             SSCCC----CEEEEEECCCCSS
T ss_pred             CCceE----EEEEEEcCCCCCc
Confidence            98743    5677777776543

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.65  E-value=1.2e-15  Score=92.90  Aligned_cols=88  Identities=28%  Similarity=0.518  Sum_probs=70.2

Q ss_pred             CCeEEeec----CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC----eEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         57 APNFTFLL----RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        57 ~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +|.|...+    ....+.+|+.+.|.|.+.|.|.|.+.|++++..+....    ........  .|.|.++...|+|.|+
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~   81 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW--SLIMESVVPSDKGNYT   81 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGT--EEEECSCCGGGCEEEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEEecCeE--EEEEccCCcCCCEEEE
Confidence            56665433    34678899999999999999999999999999875421    22222333  7999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEE
Q psy12421        129 CVATNKHGTDETNCVVIV  146 (168)
Q Consensus       129 C~a~n~~g~~~~~~~l~v  146 (168)
                      |.|.|..|.....+.|.|
T Consensus        82 C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           82 CVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEEETTEEEEEEEEEEE
T ss_pred             EEEEeCCCEEEEEEEEEE
Confidence            999999999888888776

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.65  E-value=2.5e-15  Score=95.25  Aligned_cols=82  Identities=12%  Similarity=0.281  Sum_probs=67.7

Q ss_pred             cCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe-EEEecC-------CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSD-------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      .+..+.|.|.+.|.|.|.+.|+|+|..+..... ......       ....|.|.++...|+|.|+|.|.|..|...+++
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~t~   93 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASI   93 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEEEE
Confidence            567899999999999999999999999976442 222111       134799999999999999999999999999999


Q ss_pred             EEEEeeCCCc
Q psy12421        143 VVIVESEEES  152 (168)
Q Consensus       143 ~l~v~~~p~~  152 (168)
                      .|.|...|..
T Consensus        94 ~l~v~~~P~~  103 (126)
T 1he7_A           94 MAAFMDNPFE  103 (126)
T ss_dssp             EECCCSCTTS
T ss_pred             EEEEEcCCCC
Confidence            9998877754

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.65  E-value=5.3e-15  Score=90.22  Aligned_cols=91  Identities=24%  Similarity=0.422  Sum_probs=76.2

Q ss_pred             CCCeEEeecCC-eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+.+ ..+.+|+++.|.|.+. .|.|.+.|++++..+.. .++.+...+....|.|.++..+|+|.|.|.|  
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a--   82 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA--   82 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEEETTEEEEEEEEECTTTCCEEEEEE--
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEecCCEEEEEEcCCCcCcCEEEEEEE--
Confidence            47888877777 6788999999999998 69999999999988755 4555555566668999999999999999999  


Q ss_pred             CCcceEEEEEEEEeeCCC
Q psy12421        134 KHGTDETNCVVIVESEEE  151 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~  151 (168)
                        |....++.|.|.++|.
T Consensus        83 --g~~~~~~~l~V~~~P~   98 (100)
T 2yuv_A           83 --GDEKCSTELFVRSGPS   98 (100)
T ss_dssp             --TTEEEEEEEEECCSCC
T ss_pred             --CCceEEEEEEEecCCC
Confidence              7778888999987763

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.64  E-value=3.6e-15  Score=89.43  Aligned_cols=85  Identities=19%  Similarity=0.350  Sum_probs=70.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .++.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....      ..  .|.|.++...|+|.|.|.|.|..
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~------~~--~L~i~~v~~~d~G~Y~C~a~n~~   73 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------KK--LYMVPYVDLEHQGTYWCHVYNDR   73 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCC------SS--EEEESSCCGGGCEEEEEEEECSS
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCC------CC--eEEECCCCHHhCEEEEEEEEcCC
Confidence            35677778888899999999999999999999999999998876532      12  79999999999999999999999


Q ss_pred             cceE-EEEEEEEee
Q psy12421        136 GTDE-TNCVVIVES  148 (168)
Q Consensus       136 g~~~-~~~~l~v~~  148 (168)
                      |... ..+.|.|.+
T Consensus        74 g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           74 DSQDSKKVEIIIDE   87 (91)
T ss_dssp             CEEECCCEEEEEC-
T ss_pred             CCEEeeeEEEEEeh
Confidence            9754 456666643

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.64  E-value=3.1e-15  Score=92.60  Aligned_cols=91  Identities=22%  Similarity=0.354  Sum_probs=71.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCC---CeeEEEeCCEEC-C---CCCeEEEe---c---CCEEEEEEccCCCCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNREL-S---KRDYSMSY---S---DGVVSMEIIDCKPED  123 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~---p~i~W~~~~~~~-~---~~~~~~~~---~---~~~~~l~i~~~~~~d  123 (168)
                      .|.|...+.+..+.+|+++.|.|.+.|.|.   |.+.|+|++... .   ..++.+..   .   .....|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            467777888889999999999999999998   999999987321 1   11222211   0   113479999999999


Q ss_pred             CeEEEEEEEeCCcceEEEEEEEEe
Q psy12421        124 SGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus       124 ~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      +|.|.|.|.|..|...+.+.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999999998875

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.64  E-value=9.9e-15  Score=99.89  Aligned_cols=90  Identities=26%  Similarity=0.435  Sum_probs=74.3

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEec-CCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      .+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+... ++...|.|.++...|.|.|+|.|.|..|
T Consensus       119 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g  198 (212)
T 2r15_A          119 VLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYG  198 (212)
T ss_dssp             EEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEETTTEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             ccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEEcCCCEEEEEEcCcchHHCeEEEEEEEcCCC
Confidence            3333444578899999999999999999999999999988653 3444433 4556899999999999999999999999


Q ss_pred             ceEEEEEEEEee
Q psy12421        137 TDETNCVVIVES  148 (168)
Q Consensus       137 ~~~~~~~l~v~~  148 (168)
                      .....+.|.|..
T Consensus       199 ~~~~~~~l~V~~  210 (212)
T 2r15_A          199 SETSDFTVSVFI  210 (212)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             cEEEEEEEEEEc
Confidence            999898888864

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.64  E-value=1.6e-15  Score=102.37  Aligned_cols=127  Identities=24%  Similarity=0.295  Sum_probs=91.2

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcc-eeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPL-QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN   95 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~   95 (168)
                      +.+.++...|.|.  |.   +.+.+.... ........+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++
T Consensus        64 L~i~~~~~~d~G~--Y~---C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~  138 (192)
T 2iep_A           64 LTILSVEDSDDGI--YC---CTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGD  138 (192)
T ss_dssp             EEESSCCGGGCEE--EE---EEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETT
T ss_pred             EEEcCCCcccCeE--EE---EEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCC
Confidence            5566677777554  42   233332222 12222234456788877777888999999999999999999999999999


Q ss_pred             EECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE-EEEEEEEeeCC
Q psy12421         96 RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVESEE  150 (168)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p  150 (168)
                      ..+...........+  .|.|.++...|+|.|+|.|.|..|... ..+.|.|..+|
T Consensus       139 ~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          139 SALRENSRIAVLESG--SLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EECCCCSSEEECTTS--CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC--
T ss_pred             EEccCCCcEEEecCC--cEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEEeCC
Confidence            988764433333444  699999999999999999999999874 46788887654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.64  E-value=2.5e-15  Score=95.36  Aligned_cols=97  Identities=20%  Similarity=0.338  Sum_probs=74.8

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEecc---CCCeeEEEeCCEEC----CCCCeEEE--ecC----CEEEEEEccCCCCCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGK---PPPTVKWYKGNREL----SKRDYSMS--YSD----GVVSMEIIDCKPEDS  124 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~p~i~W~~~~~~~----~~~~~~~~--~~~----~~~~l~i~~~~~~d~  124 (168)
                      |.|...+++..+.+|+.+.|.|.+.|.   |.|.+.|||+....    ...++.+.  ...    ....|.|.++...|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            456677888999999999999999875   89999999974211    01233321  111    135799999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEee-CCCchh
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVES-EEESKE  154 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~-~p~~~~  154 (168)
                      |.|+|.|.|..|...+.+.|.|.. ++..+.
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~~~~~~p~  118 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHESTGTTPN  118 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEECCCCSCCC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEecCCCCCe
Confidence            999999999999999999999998 555444

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.63  E-value=1.8e-15  Score=112.99  Aligned_cols=127  Identities=23%  Similarity=0.280  Sum_probs=95.2

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      +.+.++...|.+.  |   .+.+.+............+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       277 L~i~~~~~~d~G~--Y---~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~  351 (403)
T 3laf_A          277 LLISNVTDDDSGT--Y---TCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD  351 (403)
T ss_dssp             EEECSCCGGGCEE--E---EEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTE
T ss_pred             EEEeCCCHHHCEE--E---EEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCE
Confidence            4555566666544  3   2233333332233333344567888888888889999999999999999999999999999


Q ss_pred             ECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421         97 ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus        97 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      .+..........++  .|.|.++...|+|.|+|.|.|..|....++.|.|.++|
T Consensus       352 ~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P~  403 (403)
T 3laf_A          352 VVIPSDYFQIVGGS--NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKPA  403 (403)
T ss_dssp             ECCCSSSEEEETTT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC-
T ss_pred             ECCCCCcEEEecCc--cEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCCC
Confidence            88665444344445  79999999999999999999999999999999987754

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.63  E-value=1.1e-14  Score=100.40  Aligned_cols=100  Identities=16%  Similarity=0.311  Sum_probs=83.8

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ..+|.| ..+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...   ++.+........|.|.++...|+|.|.|.|
T Consensus        17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a   95 (215)
T 3mtr_A           17 MYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSASYLEVTPDSENDFGNYNCTA   95 (215)
T ss_dssp             CEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEEETTEEEEEECCCSGGGCEEEEEEE
T ss_pred             ecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEecCCCeeEEEEecCChhhCeEEEEEE
Confidence            456777 4666788999999999999999999999999999988653   344444455668999999999999999999


Q ss_pred             EeCCcceEEEEEEEEeeCCCchhh
Q psy12421        132 TNKHGTDETNCVVIVESEEESKEQ  155 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~~p~~~~~  155 (168)
                      .|..|.....+.|.|...|..+..
T Consensus        96 ~n~~g~~~~~~~l~v~~~P~~p~~  119 (215)
T 3mtr_A           96 VNRIGQESLEFILVQADTPSSPSI  119 (215)
T ss_dssp             ECSSCEEEEEEEEEECCCCCCCEE
T ss_pred             EECCCceEEEEEEEECCCCCCCcc
Confidence            999999999999999887776543

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.63  E-value=4.7e-16  Score=106.93  Aligned_cols=119  Identities=11%  Similarity=0.053  Sum_probs=80.3

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      |.+.+++..|.|.  |.|   .+.+............+..||.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.
T Consensus        71 L~I~~v~~~D~G~--Y~C---~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~  145 (203)
T 4fa8_A           71 LVVTAANISHDGN--YLC---RMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEG  145 (203)
T ss_dssp             EEESSCCGGGCEE--EEE---EEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC--
T ss_pred             EEEccCCHHHCeE--EEE---EEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCe
Confidence            5566677778665  432   33343333333333455567788777777888899999999999999999999998765


Q ss_pred             ECCC-----CCeEEEecCC-EEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421         97 ELSK-----RDYSMSYSDG-VVSMEIIDCKPEDSGEYKCVATNKHGTDETN  141 (168)
Q Consensus        97 ~~~~-----~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  141 (168)
                      .+..     .++. ...++ ...+.+.++..+|+|.|+|.|.|..|..+..
T Consensus       146 ~~~~~~~~~~r~~-~~~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          146 VEPAPTAANGGVM-KEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             ----------CCE-ECTTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             eecCcccccceEE-EeCCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            4421     2222 22333 3346667899999999999999999987753

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=4.8e-16  Score=95.13  Aligned_cols=91  Identities=19%  Similarity=0.294  Sum_probs=73.7

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-----CeEEEecCCEEEEEEccCCCCCCeEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-----DYSMSYSDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      ..+|.|...+.+..+.+|+++.|.|.+.+.| +.+.|++++..+...     ++.+...+....|.|.++..+|+|.|+|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C   84 (101)
T 2edk_A            6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQV   84 (101)
T ss_dssp             CCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEEECSSEEEEECSSCCGGGCSBEEE
T ss_pred             cCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEEECCCEEEEEECCCChhhCEEEEE
Confidence            3567888888889999999999999999988 999999999887653     4455555666689999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeCC
Q psy12421        130 VATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       130 ~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      .|.|    ....+.|.|.++|
T Consensus        85 ~a~n----~~~~~~l~V~~~P  101 (101)
T 2edk_A           85 ITNG----GQCEAELIVEEKQ  101 (101)
T ss_dssp             ECSS----CEECCBEEEECCC
T ss_pred             EEcC----CcEEEEEEEeCCC
Confidence            9987    3445667776553

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=1.7e-15  Score=93.36  Aligned_cols=92  Identities=15%  Similarity=0.282  Sum_probs=75.4

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCC-CeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+.+..+.+|+++.|.|.+.+.|. +.+.|+|++..+.. .++.+...+....|.|.++..+|+|.|+|.|. 
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~-   85 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVR-   85 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEETTEEEEEECSCCTTTCSCEEEEET-
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEcCCEEEEEECCCCHHHCEEEEEEEC-
Confidence            4567777888899999999999999998775 48999999988754 45555556666789999999999999999874 


Q ss_pred             CCcceEEEEEEEEeeCCC
Q psy12421        134 KHGTDETNCVVIVESEEE  151 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~  151 (168)
                         ....++.|.|.++|.
T Consensus        86 ---~~~~~a~L~V~~~p~  100 (104)
T 2eny_A           86 ---GLTSKASLIVRERSG  100 (104)
T ss_dssp             ---TEEEEECEEEECCCS
T ss_pred             ---CeeEEEEEEEeCCCc
Confidence               456788899988764

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.62  E-value=6.7e-15  Score=99.42  Aligned_cols=94  Identities=30%  Similarity=0.503  Sum_probs=80.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+...   .+.+...++...|.|.++...|+|.|+|.+.
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   83 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISFSDGRAKLTIPAVTKANSGRYSLKAT   83 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEeCCCEEEEEECCCCcccCEEEEEEEE
Confidence            4688888888899999999999999999999999999999877643   3455556667789999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeC
Q psy12421        133 NKHGTDETNCVVIVESE  149 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~  149 (168)
                      |..|.......|.|...
T Consensus        84 n~~~~~~~~~~l~v~~~  100 (194)
T 2a38_A           84 NGSGQATSTAELLVKAE  100 (194)
T ss_dssp             ETTEEEEEEEEEEEECC
T ss_pred             cCCceEeEEEEEEEccC
Confidence            99998888888888753

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.62  E-value=1e-14  Score=98.57  Aligned_cols=99  Identities=27%  Similarity=0.567  Sum_probs=84.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+.. ..+.+...+....|.|.++...|+|.|+|.+.|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   84 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSSDGRTHTLTVMTEEQEDEGVYTCIATN   84 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEESSSEEEEEEECCSGGGCEEEEEEEEC
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEeCCCEEEEEEecCCccCCEEEEEEEEC
Confidence            4678888888899999999999999999999999999999988755 444555556666899999999999999999999


Q ss_pred             CCcceEEEEEEEEeeCCCch
Q psy12421        134 KHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~~~  153 (168)
                      ..|.......|.|...|...
T Consensus        85 ~~~~~~~~~~l~v~~~p~~~  104 (197)
T 3lcy_A           85 EVGEVETSSKLLLQATPQFH  104 (197)
T ss_dssp             SSCEEEEEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEcCCCCC
Confidence            99998888888887665443

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.62  E-value=2.7e-15  Score=90.24  Aligned_cols=85  Identities=18%  Similarity=0.320  Sum_probs=64.6

Q ss_pred             CCeEEeecCCeE--EecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         57 APNFTFLLRPRV--MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        57 ~p~~~~~~~~~~--~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ||.|.....+..  +.+|+.+.|.|.+.+ |.|.+.|+|+|..+.. .++.+...++.+.|.|.++..+|+|.|+|.|.|
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   82 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLENEGPHRRLVLPATQPSDGGEFQCVAGD   82 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEEETTEEEEEESSCCGGGCSEEEEECSS
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEecCCeEEEEeCCCChhhcEEEEEEEcc
Confidence            455554444443  357999999999866 8899999999998865 445666667777899999999999999999855


Q ss_pred             CCcceEEEEEEEE
Q psy12421        134 KHGTDETNCVVIV  146 (168)
Q Consensus       134 ~~g~~~~~~~l~v  146 (168)
                          ...++.|.|
T Consensus        83 ----~~~~~~ltV   91 (91)
T 2lvc_A           83 ----ECAYFTVTI   91 (91)
T ss_dssp             ----CEEEEEEEC
T ss_pred             ----eEEEEEEEC
Confidence                455555543

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.62  E-value=8.7e-15  Score=100.61  Aligned_cols=94  Identities=26%  Similarity=0.499  Sum_probs=74.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC----CeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR----DYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+...    ++..........|.|.++...|+|.|+|.|.
T Consensus       108 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  187 (212)
T 2yd6_A          108 FPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGKYECVAT  187 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEEecCCeEEEEEcCCCcccCEEEEEEEE
Confidence            377877777888999999999999999999999999999988642    3333334445689999999999999999999


Q ss_pred             eCCcceEE-EEEEEEeeCC
Q psy12421        133 NKHGTDET-NCVVIVESEE  150 (168)
Q Consensus       133 n~~g~~~~-~~~l~v~~~p  150 (168)
                      |..|.... .+.|.|...+
T Consensus       188 N~~G~~~s~~a~l~~~~~~  206 (212)
T 2yd6_A          188 NSAGTRYSAPANLYVRGTK  206 (212)
T ss_dssp             ETTEEEECCCEEEEEEC--
T ss_pred             CCCCccccccccEEEEecc
Confidence            99998654 5667776554

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.62  E-value=4.3e-15  Score=102.33  Aligned_cols=88  Identities=22%  Similarity=0.461  Sum_probs=73.7

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +|.|...+ +..+.+|+.+.|.|.+.|. |.|.+.|+|++..+..... +....+...|.|.++..+|+|.|+|.|.|..
T Consensus       117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~  194 (207)
T 3rbs_A          117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEK-HDFKDGICTLLITEFSKKDAGIYEVILKDDR  194 (207)
T ss_dssp             SSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCC-CCCSSEEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             CCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCc-eEcCCCEEEEEECCCCcccCEEEEEEEEcCC
Confidence            78887666 4788899999999999998 9999999999998865332 2223445579999999999999999999999


Q ss_pred             cceEEEEEEEE
Q psy12421        136 GTDETNCVVIV  146 (168)
Q Consensus       136 g~~~~~~~l~v  146 (168)
                      |...+++.|..
T Consensus       195 G~~~~~~~L~~  205 (207)
T 3rbs_A          195 GKDKSRLKLVD  205 (207)
T ss_dssp             EEEEEEEEECC
T ss_pred             CEEEEEEEEec
Confidence            99999888764

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=99.61  E-value=6.8e-15  Score=115.11  Aligned_cols=126  Identities=21%  Similarity=0.350  Sum_probs=96.3

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      +.+.++...|.|.  |   .+...+............+..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       442 L~i~~v~~~D~G~--Y---~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v~W~k~~~  516 (570)
T 3b43_A          442 IHILNVDSADIGE--Y---QCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKG  516 (570)
T ss_dssp             EEECSCCGGGCEE--E---EEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCCEEEETTE
T ss_pred             EEECCCChhhCEE--E---EEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEEEEEeCCe
Confidence            3455566666444  3   3444454444444444566789999988888889999999999999999999999999986


Q ss_pred             ECCC--CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         97 ELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        97 ~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      .+..  .+..+...++...|.|.++...|+|.|+|.|.|..|...+++.|.|.
T Consensus       517 ~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          517 EIVRESDNIWISYSENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             ECCCCTTTEEECCCSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             EeccCCCeEEEEECCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence            5532  33444444556689999999999999999999999999999998875

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.61  E-value=1e-14  Score=91.41  Aligned_cols=94  Identities=24%  Similarity=0.453  Sum_probs=71.0

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-----eEEEecCCEEEEEEc-----cCCCCC
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-----YSMSYSDGVVSMEII-----DCKPED  123 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~~l~i~-----~~~~~d  123 (168)
                      +..+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....     ......++  .+.+.     ++...|
T Consensus         6 ~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~~~D   83 (117)
T 2v9t_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSG--SLFFLRIVHGRKSRPD   83 (117)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTS--CEEESSCCCBTTBCSS
T ss_pred             ccCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCC--cEEEEEEEeCCCCcCc
Confidence            3568899888888999999999999999999999999999999876431     12233333  23333     457899


Q ss_pred             CeEEEEEEEeCCcceEE-EEEEEEeeC
Q psy12421        124 SGEYKCVATNKHGTDET-NCVVIVESE  149 (168)
Q Consensus       124 ~G~Y~C~a~n~~g~~~~-~~~l~v~~~  149 (168)
                      +|.|.|.|.|..|...+ .+.|.+...
T Consensus        84 ~G~Y~C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           84 EGVYVCVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEC--
T ss_pred             CEEEEEEEEeCccceEeeeEEEEhhhh
Confidence            99999999999998755 556666543

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=8.5e-15  Score=89.71  Aligned_cols=93  Identities=24%  Similarity=0.335  Sum_probs=77.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+|.|...+.+..+.+|+++.|.|. .+.|.|.+.|++++..+.. .++.+...+....|.|.++..+|+|.|+|.    
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----   81 (103)
T 2dku_A            7 GANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQEGLTLRLTISALEKADSDTYTCD----   81 (103)
T ss_dssp             CCCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEEETTEEEEEEESCCTTTCSEEEEE----
T ss_pred             CCCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEeCCCEEEEEECCCCcccCEEEEEE----
Confidence            4677877888899999999999999 5889999999999988765 345555556667899999999999999997    


Q ss_pred             CcceEEEEEEEEeeCCCch
Q psy12421        135 HGTDETNCVVIVESEEESK  153 (168)
Q Consensus       135 ~g~~~~~~~l~v~~~p~~~  153 (168)
                      .|.....+.|.|...|.++
T Consensus        82 ~g~~~~~~~l~V~~~p~~p  100 (103)
T 2dku_A           82 IGQAQSRAQLLVQGRRSGP  100 (103)
T ss_dssp             CSSCBCCEEEEEECSCCCC
T ss_pred             eCCceEEEEEEEeCccCCC
Confidence            6777778889998877654

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.61  E-value=6.9e-15  Score=99.72  Aligned_cols=129  Identities=20%  Similarity=0.268  Sum_probs=91.6

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceecc-----CcceeeEee--ecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRR-----EPLQITFWQ--ETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP   86 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-----~~~~~~~~~--~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~   86 (168)
                      ...+.+.++...|.+.  |.|........     ....+.+..  .....+|.+...+....+..|+.+.|.|.+.|.|.
T Consensus        65 ~~~L~i~~v~~~d~G~--Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~  142 (201)
T 3s97_C           65 NGNLYIANVEASDKGN--YSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQFKDVYALMGQNVTLECFALGNPV  142 (201)
T ss_dssp             TCCEEESSCCGGGCEE--EEEEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEECCCEEEETTCCEEEEEEEEEESC
T ss_pred             CCeEEECcCCcccCeE--EEEEEEecCCCcchhhcccceeeccccccCCCCCceEecCCceEEecCCcEEEEEEccCCCC
Confidence            3457777888888666  43322211111     111111111  11124677777777888999999999999999999


Q ss_pred             CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         87 PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        87 p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      |.+.|++++..+... ......++  .|.|.++...|+|.|+|.|.|..|....++.|.|.
T Consensus       143 p~v~W~~~~~~~~~~-~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          143 PDIRWRKVLEPMPST-AEISTSGA--VLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             CEEEEEETTBCCCTT-CEEETTTT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CceEEEeCCCcCCCc-eeecCCCC--EEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence            999999999876643 23333444  79999999999999999999999999988888875

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.61  E-value=3e-15  Score=92.30  Aligned_cols=90  Identities=18%  Similarity=0.254  Sum_probs=73.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+.+..+.+|+++.|.|.+.+.|.+ +.|++++..+.. .++.+...+....|.|.++..+|+|.|+|.|.|
T Consensus         6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n   84 (106)
T 2dlt_A            6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISHVGRFHKLVIDDVRPEDEGDYTFVPDG   84 (106)
T ss_dssp             CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEEETTEEEEEESSCCTTTCSCEEEEEET
T ss_pred             CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEEeCCEEEEEECCCCcCCCEEEEEEEcc
Confidence            457888888999999999999999999998887 999999988754 345555556666899999999999999999999


Q ss_pred             CCcceEEEEEEEEe
Q psy12421        134 KHGTDETNCVVIVE  147 (168)
Q Consensus       134 ~~g~~~~~~~l~v~  147 (168)
                      ..+  ..++.|.|.
T Consensus        85 ~~~--~~~~~l~V~   96 (106)
T 2dlt_A           85 YAL--SLSAKLNFL   96 (106)
T ss_dssp             SCC--CCCBCEEEE
T ss_pred             CCc--eEEEEEEEE
Confidence            833  344445544

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=2.4e-14  Score=89.14  Aligned_cols=91  Identities=12%  Similarity=0.116  Sum_probs=74.4

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-----------CeEEEecCCEEEEEEccCCCCCC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-----------DYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----------~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      .+|.|...+.+..+.+|+.+.|.|.+.+  .|.+.|+|+|..+...           ++.+...+..++|.|.++..+|+
T Consensus         7 p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~~g~~~~L~I~~v~~~D~   84 (112)
T 2e6q_A            7 GTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQKGLQHRLILHAVKHQDS   84 (112)
T ss_dssp             SCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECCBTTEEEEEEESCCSTTC
T ss_pred             CCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEeCCcEEEEEECCCCHHHC
Confidence            3578888999999999999999999987  7889999999998764           33444445567899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      |.|+|...+   ....++.|.|.++|.
T Consensus        85 G~Y~~~~~~---~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           85 GALVGFSCP---GVQDSAALTIQESSG  108 (112)
T ss_dssp             SEEEEEEET---TEEEEEEEEEECSSC
T ss_pred             ccEEEEEEC---CeeEEEEEEEeCCCc
Confidence            999886554   445688999988764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.60  E-value=3.5e-14  Score=88.42  Aligned_cols=91  Identities=27%  Similarity=0.425  Sum_probs=76.0

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+|.|...+.+..+.+|+++.|.|.+.+.  |.+.|++++..+.. .++.+...+....|.|.++..+|+|.|.|.|   
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a---   92 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQDGARCELQIRGLVAEDAGEYLCMC---   92 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEEETTEEEEEECSCCSTTCEEEEEEE---
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEECCCEEEEEECCCChhhCEEEEEEe---
Confidence            45688888888999999999999999774  78999999988764 4555555666668999999999999999999   


Q ss_pred             CcceEEEEEEEEeeCCCc
Q psy12421        135 HGTDETNCVVIVESEEES  152 (168)
Q Consensus       135 ~g~~~~~~~l~v~~~p~~  152 (168)
                       |.....+.|.|..+|..
T Consensus        93 -~~~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           93 -GKERTSAMLTVRAMPSG  109 (113)
T ss_dssp             -TTEEEEEEEEECCCCCS
T ss_pred             -CCCCEEEEEEEeCCCCC
Confidence             77888889999877654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.60  E-value=2.7e-14  Score=98.11  Aligned_cols=96  Identities=23%  Similarity=0.402  Sum_probs=80.7

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEe--cCCEEEEEEccC-CCCCCeEEEEE
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY--SDGVVSMEIIDC-KPEDSGEYKCV  130 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~--~~~~~~l~i~~~-~~~d~G~Y~C~  130 (168)
                      ...+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+.........  ......|.|.++ ...|+|.|+|.
T Consensus         3 ~~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   82 (212)
T 2yd6_A            3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECV   82 (212)
T ss_dssp             -CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEEEGGGTEEEEEECSCCTTTTCEEEEEE
T ss_pred             CCCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEEEcCCCceEEEEeccCCCCCCeEEEEE
Confidence            356789998899999999999999999999999999999999988765543322  234557999999 59999999999


Q ss_pred             EEeCCcceEEEEEEEEeeC
Q psy12421        131 ATNKHGTDETNCVVIVESE  149 (168)
Q Consensus       131 a~n~~g~~~~~~~l~v~~~  149 (168)
                      +.|..|.....+.|.|...
T Consensus        83 a~n~~g~~~~~~~l~V~~~  101 (212)
T 2yd6_A           83 ASNNVGEISVSTRLTVLRE  101 (212)
T ss_dssp             EEETTEEEEEEEEEEEECG
T ss_pred             EEcCCCcEEEEEEEEEecc
Confidence            9999999888888888764

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.60  E-value=1.3e-14  Score=87.70  Aligned_cols=86  Identities=16%  Similarity=0.326  Sum_probs=70.9

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .|.|...+.+..+.+|+++.|.|.+ +.|.+.+.|++++..+.. .++.+...+....|.|.++...|+|.|+|.|    
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a----   82 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLATEGTRHTLTVREVGPADQGSYAVIA----   82 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEEETTEEEEEESSCCTTCCSEEEEEE----
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEEcCCEEEEEEcCCCcccCEEEEEEE----
Confidence            3566677788899999999999999 889999999999987754 4455555566668999999999999999999    


Q ss_pred             cceEEEEEEEEe
Q psy12421        136 GTDETNCVVIVE  147 (168)
Q Consensus       136 g~~~~~~~l~v~  147 (168)
                      |....++.|.|.
T Consensus        83 g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 GSSKVKFDLKVI   94 (95)
T ss_dssp             TTEEEEEEEEEE
T ss_pred             CCceEEEEEEEe
Confidence            666777777775

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.60  E-value=8.1e-15  Score=92.07  Aligned_cols=96  Identities=21%  Similarity=0.282  Sum_probs=70.9

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eEEEecC----CEEEEEEccCCCCCCeEE
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSD----GVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~----~~~~l~i~~~~~~d~G~Y  127 (168)
                      .+..+|.+..... ..  ......|.|.+.|.|.|.+.|++++..+.... .......    ....|.|.++...|+|.|
T Consensus         4 ~V~~pP~i~~~~~-~~--~~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y   80 (118)
T 1wwc_A            4 TVYYPPRVVSLEE-PE--LRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNY   80 (118)
T ss_dssp             CCCCCCCCCCCCC-CC--CCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEE
T ss_pred             EEecCCceeccCC-Ce--eccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEE
Confidence            3445666543322 11  22557788999999999999999999887643 2222111    234799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEeeCCC
Q psy12421        128 KCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      +|.|.|..|....++.|.|...|.
T Consensus        81 ~C~a~N~~G~~~~~~~l~v~~~P~  104 (118)
T 1wwc_A           81 TLIAKNPLGTANQTINGHFLKEPF  104 (118)
T ss_dssp             EEEEEETTEEEEEEEEECCSCCCC
T ss_pred             EEEEECCCCeEeeEEEEEEccCCC
Confidence            999999999999999988877654

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.60  E-value=1.7e-14  Score=107.23  Aligned_cols=133  Identities=17%  Similarity=0.213  Sum_probs=98.9

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN   95 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~   95 (168)
                      .|.+.+++..|.|.  |.   +.+.+............+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++
T Consensus        64 ~L~i~~v~~~D~G~--Y~---C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g  138 (389)
T 2jll_A           64 SLHIKDVKLSDSGR--YD---CEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDK  138 (389)
T ss_dssp             EEEEESCCGGGCEE--EE---EEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETT
T ss_pred             eEEEcccChhhCEE--EE---EEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECC
Confidence            56677888888665  43   23333333223333345556788766555457889999999999999999999999999


Q ss_pred             EECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCch
Q psy12421         96 RELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus        96 ~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      ..+...   ++.+........|.|.++...|+|.|+|.|.|..|.......|.+...|..+
T Consensus       139 ~~l~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~P  199 (389)
T 2jll_A          139 LVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVPSSP  199 (389)
T ss_dssp             EESSCTTCTTEEEEECSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEECCCCCCC
T ss_pred             ccCCcccCceEEEeccCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEecCCCCCC
Confidence            988653   3444444455689999999999999999999999998888888887766655

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.60  E-value=4e-16  Score=98.67  Aligned_cols=97  Identities=20%  Similarity=0.368  Sum_probs=78.9

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCe-eEEEeCCEECCC---CCeEE--EecCC--EEEEEEccCCCCCC
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSK---RDYSM--SYSDG--VVSMEIIDCKPEDS  124 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~---~~~~~--~~~~~--~~~l~i~~~~~~d~  124 (168)
                      .+..+|.|.. +....+.+|+.+.|.|.+.|.|.|. +.|++++..+..   .++.+  .....  ...|.|.++...|.
T Consensus        10 ~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (122)
T 2cry_A           10 TVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF   88 (122)
T ss_dssp             CCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred             EEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhC
Confidence            4567888887 7778899999999999999999997 999999887754   33333  12222  45799999999999


Q ss_pred             -eEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        125 -GEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       125 -G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                       |.|+|.|.|..|.....+.|.|.+.+
T Consensus        89 ~G~Y~C~a~N~~G~~~~~~~l~V~~~~  115 (122)
T 2cry_A           89 QTIYNCTAWNSFGSDTEIIRLKEQGSE  115 (122)
T ss_dssp             HSCEEEEEECSSCEEEEEECCCCSCSS
T ss_pred             CceEEEEEECCCCeEEEEEEEEECCCC
Confidence             99999999999999988888887543

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.59  E-value=1.7e-14  Score=107.07  Aligned_cols=123  Identities=22%  Similarity=0.349  Sum_probs=91.6

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      +.+.++...|.+.  |   .+.+.+............+..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       259 L~i~~~~~~d~G~--Y---~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~  333 (382)
T 1cs6_A          259 LHIQNVDFEDEGT--Y---ECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQ  333 (382)
T ss_dssp             EEECSCCGGGCEE--E---EEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTE
T ss_pred             EEEccCChhhCEE--E---EEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCE
Confidence            4455566666444  3   2233333222222233344567888888888889999999999999999999999999999


Q ss_pred             ECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         97 ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        97 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      .+...... ...++  .|.|.++...|+|.|+|.|.|..|....++.|.|.
T Consensus       334 ~~~~~~~~-~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          334 PLASQNRI-EVSGG--ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             ECCCCSSE-EEETT--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ECCCCceE-EEECC--EEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            88764422 22344  79999999999999999999999999999988875

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.59  E-value=3e-15  Score=104.55  Aligned_cols=92  Identities=20%  Similarity=0.361  Sum_probs=67.1

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEe----CCEECCCCCe--EEEe-------cCCEEEEEEccCCCCCCeEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK----GNRELSKRDY--SMSY-------SDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~----~~~~~~~~~~--~~~~-------~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      .+....+..|+.+.|.|.+.+.|.|.+.|++    ++..+.....  ....       ......|.|.++...|.|.|+|
T Consensus       120 ~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  199 (241)
T 3grw_A          120 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLC  199 (241)
T ss_dssp             TTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEE
Confidence            3556778899999999999999999999999    7766643221  1100       1123469999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeCCCchh
Q psy12421        130 VATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus       130 ~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      .|.|..|....++.|.|.++|..+.
T Consensus       200 ~a~N~~g~~~~~~~l~V~~~p~~~~  224 (241)
T 3grw_A          200 RATNFIGVAEKAFWLSVHGPRAAEE  224 (241)
T ss_dssp             EEECSSCEEEEEEEEEC--------
T ss_pred             EEecCcceEEEEEEEEecCCCCCCc
Confidence            9999999999999999988765544

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=1.8e-14  Score=88.70  Aligned_cols=88  Identities=22%  Similarity=0.425  Sum_probs=70.8

Q ss_pred             cCCCeEEeecCC-eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         55 ESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        55 ~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ..+|.|...+.+ ..+.+|+++.|.|.+ +.|.+.+.|++++..+...  ++.+...+....|.|.++..+|+|.|+|.+
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   91 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVV   91 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEE
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEecCCEEEEEECCCCcccCEEEEEEE
Confidence            457788777777 789999999999999 7899999999999887654  455555566678999999999999999999


Q ss_pred             EeCCcceEEEEEEEEe
Q psy12421        132 TNKHGTDETNCVVIVE  147 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~  147 (168)
                          |....++.|.|.
T Consensus        92 ----~~~~~~~~l~V~  103 (104)
T 1pd6_A           92 ----GGEKCSTELFVK  103 (104)
T ss_dssp             ----TTEEECCEEEEE
T ss_pred             ----CCCcEEEEEEEe
Confidence                445555666654

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.59  E-value=8.9e-14  Score=95.45  Aligned_cols=96  Identities=21%  Similarity=0.477  Sum_probs=80.8

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEe-cCCEEEEEEccCCC-CCCeEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSY-SDGVVSMEIIDCKP-EDSGEYKCV  130 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~-~~~~~~l~i~~~~~-~d~G~Y~C~  130 (168)
                      ..+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+..  .++.+.. .++...|.|.++.. .|+|.|+|.
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d~G~Y~C~   83 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECV   83 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTTEEEEEESSCCTTTTCSEEEEE
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCCeEEEEEEecCCCCcCceEEEE
Confidence            4689999999999999999999999999999999999999998852  3444332 35556899999999 999999999


Q ss_pred             EEeCCcc-eEEEEEEEEeeCC
Q psy12421        131 ATNKHGT-DETNCVVIVESEE  150 (168)
Q Consensus       131 a~n~~g~-~~~~~~l~v~~~p  150 (168)
                      +.|..|. ......|.|...+
T Consensus        84 ~~n~~g~~~~~~~~l~V~~~~  104 (212)
T 2yd1_A           84 AENGVGDAVSADATLTIYEGD  104 (212)
T ss_dssp             EECSSSCEEEEEEEEEEECTT
T ss_pred             EEeCCCCeEEeeEEEEEeccc
Confidence            9999998 7778888887653

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.58  E-value=1.9e-14  Score=107.15  Aligned_cols=122  Identities=26%  Similarity=0.334  Sum_probs=92.1

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceee-EeeecccCCCeEEeecCC-eEEecCCcEEEEEEEeccCCCeeEEEe
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQIT-FWQETVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYK   93 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~i~W~~   93 (168)
                      .+.+.++...|.|.  |.   +.+.+....... .....+..+|.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|++
T Consensus       271 ~L~i~~~~~~d~G~--Y~---C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~  345 (395)
T 1bih_A          271 RLLFKTTLPEDEGV--YT---CEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH  345 (395)
T ss_dssp             EEEESSCCGGGCEE--EE---EEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEE
T ss_pred             eEEEccCChhhCEE--EE---EEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCeeEEEE
Confidence            35566667677555  42   233333222221 333355568888877777 788999999999999999999999999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      ++..+...++.+  .++  .|.|.++...|+|.|+|.|.|..|.....+.|.|
T Consensus       346 ~g~~~~~~~~~~--~~~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          346 NAKPLSGGRATV--TDS--GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             TTEECCSSSEEE--ETT--EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCEECCCCceEE--ECC--EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            999987664433  344  7999999999999999999999999998888876

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=5.7e-15  Score=90.00  Aligned_cols=84  Identities=24%  Similarity=0.442  Sum_probs=68.1

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ....+.+|+.+.|.|.+.|.| |.+.|++++..+...... .....  .|.|.++...|+|.|.|.|.|..|.....+.|
T Consensus        11 ~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~-~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   86 (99)
T 2cr3_A           11 ESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRT-RITGE--EVEVQDSVPADSGLYACVTSSPSGSDTTYFSV   86 (99)
T ss_dssp             EECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSE-EECSS--EEEETTCCTTTCEEEEEEEEETTEEEEEEEEE
T ss_pred             cCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcE-EEECC--EEEEccCCHHHCEEEEEEEEeCCceEEEEEEE
Confidence            345677899999999999976 799999999877553322 22344  79999999999999999999999999888888


Q ss_pred             EEeeCCCc
Q psy12421        145 IVESEEES  152 (168)
Q Consensus       145 ~v~~~p~~  152 (168)
                      .|...+..
T Consensus        87 ~V~~~~~s   94 (99)
T 2cr3_A           87 NVSDALPS   94 (99)
T ss_dssp             CBCSCCSC
T ss_pred             EEecCCCC
Confidence            88776544

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.58  E-value=1.1e-14  Score=105.03  Aligned_cols=135  Identities=16%  Similarity=0.208  Sum_probs=94.7

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEe-----ecCCeEEecCCcEEEEEEEeccCCCeeE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTF-----LLRPRVMQVRQTCKLLCCLSGKPPPTVK   90 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~-----~~~~~~~~~g~~~~l~C~~~g~p~p~i~   90 (168)
                      .|.+.++...|.+.  |.|   .+.+............+..+|.+..     .+....+..|+.+.|.|.+.|.|.|.+.
T Consensus        63 ~L~i~~v~~~d~G~--Y~C---~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~  137 (305)
T 2nzi_A           63 QLIIASVTDDDATV--YQV---RATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVIT  137 (305)
T ss_dssp             EEEESSCCGGGCSE--EEE---EEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEE
T ss_pred             EEEEccCChhhCeE--EEE---EEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEE
Confidence            45666777777555  432   2222222212222223334444432     2245678899999999999999999999


Q ss_pred             EEeCCEECCC-CCeEEEecCCEEEEEEcc-CCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchhh
Q psy12421         91 WYKGNRELSK-RDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ  155 (168)
Q Consensus        91 W~~~~~~~~~-~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~  155 (168)
                      |++++..+.. .++.+........|.|.+ +...|.|.|+|.|.|..|....++.|.|...|.++..
T Consensus       138 W~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~p~~  204 (305)
T 2nzi_A          138 WQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVPDPPRG  204 (305)
T ss_dssp             EEESSSBCCSSSSCEEEECSSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEE
T ss_pred             EEECCEECCCCCcEEEEEcCCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEEecCCCCCCC
Confidence            9999987764 344444444556899999 9999999999999999999999999999888776554

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.58  E-value=9.1e-15  Score=106.08  Aligned_cols=95  Identities=17%  Similarity=0.170  Sum_probs=76.3

Q ss_pred             ecccCCCeEEeec-CCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEE
Q psy12421         52 ETVESAPNFTFLL-RPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        52 ~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      ..+..+|.+...+ ....+..|+.+.|.|.+.|.|.| .+.|++++..+....   ...++  .|.|.++...|+|.|+|
T Consensus       211 l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~---~~~~~--~L~i~~v~~~d~G~Y~C  285 (313)
T 4fqp_A          211 LTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFA---VAQGA--QLLIRPVDKPINTTLIC  285 (313)
T ss_dssp             CCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEETT--EEEECCCSSCCEEEEEE
T ss_pred             cccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCce---EEeCC--EEEECcCChhhCEEEEE
Confidence            3556678876544 34566778999999999999999 699999998776532   22344  79999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeCCC
Q psy12421        130 VATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       130 ~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      .|.|..|....++.|.|.+.|.
T Consensus       286 ~a~N~~G~~~~~~~l~V~~~PP  307 (313)
T 4fqp_A          286 NVTNALGARQAELTVQVKEGPP  307 (313)
T ss_dssp             EEECSSCEEEEEEEEEEECCC-
T ss_pred             EEEeCCCcEEEEEEEEEEeCCC
Confidence            9999999999999999987653

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.58  E-value=7.9e-15  Score=89.86  Aligned_cols=92  Identities=26%  Similarity=0.482  Sum_probs=76.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+.+..+.+|+++.|.|.+.+.|.+ +.|++++..+.. .++.+...+....|.|.++...|+|.|.|.   
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~---   81 (103)
T 2e7b_A            6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQEGAMLELVVRNLRPQDSGRYSCS---   81 (103)
T ss_dssp             CCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEECSSEEEEEECSCCTTTCCCEEEE---
T ss_pred             CCCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEEcCCEEEEEEccCCcccCEEEEEE---
Confidence            356778777888999999999999999999999 999999987764 445555556666799999999999999997   


Q ss_pred             CCcceEEEEEEEEeeCCC
Q psy12421        134 KHGTDETNCVVIVESEEE  151 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~  151 (168)
                       .|.....+.|.|..+|.
T Consensus        82 -~g~~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           82 -FGDQTTSATLTVTALPS   98 (103)
T ss_dssp             -CSSCBCCBCEEEECCCC
T ss_pred             -ECCcEEEEEEEEEeccc
Confidence             66677778888887664

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=1.2e-14  Score=91.23  Aligned_cols=94  Identities=22%  Similarity=0.320  Sum_probs=72.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc---CCCeeEEEeCCE-ECC---CCCeEEEe--cC----CEEEEEEccCCCC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK---PPPTVKWYKGNR-ELS---KRDYSMSY--SD----GVVSMEIIDCKPE  122 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~---p~p~i~W~~~~~-~~~---~~~~~~~~--~~----~~~~l~i~~~~~~  122 (168)
                      ..+.|...+.+..+.+|+.+.|.|.+.|.   |.|.+.|||+.. .+.   ..++.+..  ..    ....|.|.++...
T Consensus        11 ~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   90 (118)
T 2edn_A           11 PTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLG   90 (118)
T ss_dssp             CSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTT
T ss_pred             CcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChh
Confidence            34567778888999999999999999885   799999999742 121   12222211  11    1357999999999


Q ss_pred             CCeEEEEEEEeCCcceEEEEEEEEeeC
Q psy12421        123 DSGEYKCVATNKHGTDETNCVVIVESE  149 (168)
Q Consensus       123 d~G~Y~C~a~n~~g~~~~~~~l~v~~~  149 (168)
                      |+|.|.|.+.|..|..++.+.|.|..+
T Consensus        91 D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           91 DRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             TCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             hCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            999999999999999999999998764

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=4.7e-14  Score=87.74  Aligned_cols=92  Identities=21%  Similarity=0.321  Sum_probs=71.2

Q ss_pred             CCCeEEeecCC---eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         56 SAPNFTFLLRP---RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        56 ~~p~~~~~~~~---~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      .+|.+...+..   ..+.+|+.+.|.|.+. .|.+.+.|++++..+.. .++.+...+....|.|.++..+|+|.|.|.+
T Consensus         9 ~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   87 (113)
T 2cpc_A            9 DVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI   87 (113)
T ss_dssp             SCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEECSSEEEEEESSCCTTTCEEEEEES
T ss_pred             cCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEECCCEEEEEECCCCcccCEEEEEEE
Confidence            34544444444   5678899999999995 78999999999998865 3444444454568999999999999999999


Q ss_pred             EeCCcceEEEEEEEEeeCCCc
Q psy12421        132 TNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      .|    ....+.|.|.++|..
T Consensus        88 ~n----~~~~~~l~V~~~p~~  104 (113)
T 2cpc_A           88 DD----ESASFTVTVTEPPVR  104 (113)
T ss_dssp             SS----CEEEEEEEEECCCCC
T ss_pred             ec----CcEEEEEEEecCCch
Confidence            88    556778888877644

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.58  E-value=8.4e-14  Score=85.93  Aligned_cols=94  Identities=15%  Similarity=0.306  Sum_probs=72.0

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEecc--CCCeeEEEeCCEECCCCCeEE--EecC-------CEEEEEEccCCC
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGNRELSKRDYSM--SYSD-------GVVSMEIIDCKP  121 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~~~~~~~~~~~--~~~~-------~~~~l~i~~~~~  121 (168)
                      ....+|.|...+....+.+|+.+.|.|.+.+.  +.+.+.|++++..+.......  ....       ....|.|.++..
T Consensus         6 ~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~   85 (112)
T 3so5_A            6 DDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEF   85 (112)
T ss_dssp             --CCSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCG
T ss_pred             CCCCCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEecccc
Confidence            34568899888888999999999999999865  468999999999886533110  1110       124799999999


Q ss_pred             CCCeEEEEEEEeCCcc-eEEEEEEEE
Q psy12421        122 EDSGEYKCVATNKHGT-DETNCVVIV  146 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~-~~~~~~l~v  146 (168)
                      .|+|.|.|.|.|..|. ....+.|.|
T Consensus        86 ~D~G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           86 TSEGXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ccCCeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999999998 446666665

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.58  E-value=1.7e-14  Score=107.59  Aligned_cols=125  Identities=18%  Similarity=0.226  Sum_probs=91.3

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      +.+.++...|.+.  |   .+.+.+............+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       277 L~i~~~~~~d~G~--Y---~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~  351 (404)
T 3p3y_A          277 LRITNVSEEDSGE--Y---FCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGE  351 (404)
T ss_dssp             EEESSCCGGGCEE--E---EEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTE
T ss_pred             EEEccCCHhHCEE--E---EEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCE
Confidence            4445555555444  3   2233333332333333445567888888888899999999999999999999999999999


Q ss_pred             ECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421         97 ELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus        97 ~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      .+....  ......++  .|.|.++...|+|.|+|.|.|..|.....+.|.|.+
T Consensus       352 ~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          352 PLQSAPPNPNREVAGD--TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EGGGSCCCTTEEEETT--EEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             ecCCCCCCceEEecCC--EEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            886422  12223344  799999999999999999999999999999888754

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.58  E-value=1.2e-13  Score=98.59  Aligned_cols=97  Identities=22%  Similarity=0.488  Sum_probs=83.8

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..||.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+.. ..+.+....+...|.|.++...|+|.|+|.+.|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n   82 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN   82 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEE
Confidence            3588998899999999999999999999999999999999998865 344444455566899999999999999999999


Q ss_pred             CCcceEEEEEEEEeeCCC
Q psy12421        134 KHGTDETNCVVIVESEEE  151 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~  151 (168)
                      ..|.......|.|..+|.
T Consensus        83 ~~g~~~~~~~l~V~~~p~  100 (284)
T 2rik_A           83 VAGKDSCSAQLGVQEPPR  100 (284)
T ss_dssp             TTEEEEEEEEEEEECCCE
T ss_pred             CCceEEEEEEEEccCCCc
Confidence            999988888898887664

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.58  E-value=1.9e-14  Score=106.97  Aligned_cols=117  Identities=17%  Similarity=0.229  Sum_probs=88.7

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN   95 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~   95 (168)
                      .+.+.++...|.+.  |   .+.+.+............+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++
T Consensus       271 ~L~i~~v~~~d~G~--Y---~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g  345 (388)
T 2v5m_A          271 TLIIKDAVVEDSGK--Y---LCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDG  345 (388)
T ss_dssp             EEEESSCCGGGCEE--E---EEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEETT
T ss_pred             EEEECcCCHHHCeE--E---EEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEECC
Confidence            34555666666554  3   233333333233333334556777777777888999999999999999999999999999


Q ss_pred             EECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         96 RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      ..+...       ++  .|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus       346 ~~i~~~-------~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          346 KAIGHS-------ES--VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EECSCC-------SS--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EECccC-------CC--EEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            987642       22  7999999999999999999999999999988876

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.58  E-value=4.1e-14  Score=87.04  Aligned_cols=95  Identities=15%  Similarity=0.207  Sum_probs=73.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-EC--------CCCCeEEEe-cCCEEEEEEccCCCCCC
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-EL--------SKRDYSMSY-SDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-~~--------~~~~~~~~~-~~~~~~l~i~~~~~~d~  124 (168)
                      ..+|.+...+.+..+.+|+++.|.|.+.+.|.+.+.|++++. .+        ...++.+.. ..+...|.|.+++.+|+
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D~   83 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVSDVSLSDE   83 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESSSEEEEEECSCCGGGC
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCCCcEEEEECCCChhHC
Confidence            345677778888999999999999999999999999998764 11        112333322 22455899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      |.|.|.+.| .|.......|.|..+|
T Consensus        84 G~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           84 GQYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             eEEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            999999999 8888888899888754

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.57  E-value=8.1e-14  Score=94.33  Aligned_cols=96  Identities=27%  Similarity=0.519  Sum_probs=81.4

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEE-ecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMS-YSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+...  ++.+. ..++...|.|.++...|+|.|+|.+.
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~   82 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEECSCCGGGCSEEEEEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCCEEEEEECcCCHHhCEEEEEEEE
Confidence            5789988888999999999999999999999999999999988653  33332 24556689999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeCCC
Q psy12421        133 NKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~p~  151 (168)
                      |..|.......|.|..+|.
T Consensus        83 n~~g~~~~~~~l~V~~~p~  101 (197)
T 2j8h_A           83 NQGGSVSGTASLEVEVPAK  101 (197)
T ss_dssp             ETTEEEEEEEEEEEEEEEE
T ss_pred             ECCCceeEEEEEEEcCCCc
Confidence            9999988888888876543

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.57  E-value=3.3e-14  Score=86.25  Aligned_cols=81  Identities=19%  Similarity=0.360  Sum_probs=65.3

Q ss_pred             ecCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN  141 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  141 (168)
                      .+....+.+|+++.|.|.+. +.|.+.+.|++++........  ...++  .|.|.++..+|+|.|.|.+.|..|.....
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~--~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRA--MDFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGT   91 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTE--EEETT--EEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCcee--ecCCC--EEEEeCCChhhCEEEEEEecCCCCccccE
Confidence            34556889999999999998 689999999997543333221  22344  79999999999999999999999998888


Q ss_pred             EEEEEe
Q psy12421        142 CVVIVE  147 (168)
Q Consensus       142 ~~l~v~  147 (168)
                      +.|.|.
T Consensus        92 ~~l~V~   97 (98)
T 1gl4_B           92 ATLHVQ   97 (98)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            888774

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.57  E-value=5e-14  Score=95.12  Aligned_cols=128  Identities=16%  Similarity=0.234  Sum_probs=87.7

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEee---cCCeEEecCCcEEEEEEEeccCCCeeEEE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFL---LRPRVMQVRQTCKLLCCLSGKPPPTVKWY   92 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~~~~~g~~~~l~C~~~g~p~p~i~W~   92 (168)
                      .+.+.++...|.+.  |.|   .+.+............+..+|.+...   .....+..|+.+.|.|.+.|.|.|.+.|+
T Consensus        64 ~L~i~~~~~~d~G~--Y~C---~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~  138 (197)
T 3lcy_A           64 TLTVMTEEQEDEGV--YTC---IATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWF  138 (197)
T ss_dssp             EEEEECCSGGGCEE--EEE---EEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEE
T ss_pred             EEEEecCCccCCEE--EEE---EEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEe
Confidence            46666777777555  432   22222222222222233334444321   23356788999999999999999999999


Q ss_pred             eCCEECCCC-CeEEEecCCEEEEEEccCCC-CCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421         93 KGNRELSKR-DYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus        93 ~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      +++..+... .+.+........|.|.++.. .|+|.|+|.|.|..|.....+.|.|.+
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          139 HGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             ETTEECCCCSSEEEEECSSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEEC
T ss_pred             ECCEECCCCCceEEEEcCCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEec
Confidence            999988653 34444444445799999984 899999999999999999999888864

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.57  E-value=2.3e-14  Score=105.65  Aligned_cols=126  Identities=10%  Similarity=0.086  Sum_probs=86.9

Q ss_pred             CceeEEEEeCCCC-CCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC
Q psy12421         16 DNPRLRTRAIPKT-IPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG   94 (168)
Q Consensus        16 ~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~   94 (168)
                      .+.+.++...|.| .  |.+.   +.+............+..+|.+    ....+..|+.+.|.|.+.|.|.|.+.|+++
T Consensus       213 ~L~i~~v~~~D~G~~--Y~C~---a~n~~g~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~  283 (347)
T 2ifg_A          213 GLTLANVTSDLNRKN--VTCW---AENDVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSLRWLFN  283 (347)
T ss_dssp             EEEEESCCSTTTTCC--EEEC---CEETTEECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEEEEEET
T ss_pred             eEEEeeCChHHCCCe--EEEE---EEcCCCCEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcEEEEeC
Confidence            4556677777755 4  4222   2222222222233344556665    112245789999999999999999999999


Q ss_pred             CEECCCCCeEEEe--c------CCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421         95 NRELSKRDYSMSY--S------DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus        95 ~~~~~~~~~~~~~--~------~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      +..+.........  .      .....|.|.+++..|+|.|+|.|.|..|....++.|.|.++|
T Consensus       284 g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~P  347 (347)
T 2ifg_A          284 GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFMDNP  347 (347)
T ss_dssp             TEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSCCCC
T ss_pred             CEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEecCCC
Confidence            9988764432211  1      113469999999999999999999999999999998887654

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.57  E-value=2.8e-14  Score=86.15  Aligned_cols=84  Identities=21%  Similarity=0.355  Sum_probs=67.5

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      .+.+..+.+|+++.|.|.+.+  .|.+.|++++..+........ .++  .|.|.++..+|+|.|.|.|.|..|.....+
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~-~~~--~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~   81 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVL-IGE--YLQIKGATPRDSGLYACTAARTVDSETWIF   81 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEE-ETT--EEEECSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEE-eCC--EEEECcCCcccCEEEEEEEccCCCcEEEEE
Confidence            445577889999999999887  589999999998865432222 344  799999999999999999999999988899


Q ss_pred             EEEEeeCCC
Q psy12421        143 VVIVESEEE  151 (168)
Q Consensus       143 ~l~v~~~p~  151 (168)
                      .|.|.+++.
T Consensus        82 ~l~V~~~~~   90 (95)
T 4hwu_A           82 MVNVTDAAE   90 (95)
T ss_dssp             EEEECCC--
T ss_pred             EEEEeCCcc
Confidence            998887653

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.56  E-value=2e-14  Score=96.55  Aligned_cols=126  Identities=21%  Similarity=0.357  Sum_probs=86.1

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcc--eeeEeeecccCCCeEEeecC--CeEEecCCcEEEEEEEeccCCCeeE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPL--QITFWQETVESAPNFTFLLR--PRVMQVRQTCKLLCCLSGKPPPTVK   90 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~p~i~   90 (168)
                      ..+.+.++...|.|.  |.|.   +.+....  ........+..+|.+.....  ...+..|+.+.|.|.+.|.|.|.+.
T Consensus        57 ~~L~i~~~~~~d~G~--Y~C~---~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~  131 (189)
T 2v5t_A           57 NNLQILNINKSDEGI--YRCE---GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAIS  131 (189)
T ss_dssp             SCEEETTCCGGGCEE--EEEE---EEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEE
T ss_pred             CCEEEeeCCHhHCcE--EEEE---EEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEE
Confidence            346666777777554  4322   2222111  11112223344565554333  3456679999999999999999999


Q ss_pred             EEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         91 WYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        91 W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      |++++..+.... +......+  .|.|.++...|+|.|+|.|.|..|....++.|.|.
T Consensus       132 W~~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  187 (189)
T 2v5t_A          132 WFRNGKLIEENEKYILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVF  187 (189)
T ss_dssp             EEETTEECCCSSSEEEETTTT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEECCEECcCCCcEEEecCCC--EEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEEE
Confidence            999999887543 33322333  79999999999999999999999999888888775

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.56  E-value=3.7e-14  Score=95.61  Aligned_cols=124  Identities=15%  Similarity=0.182  Sum_probs=87.8

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccC-cceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRRE-PLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG   94 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~   94 (168)
                      .+.+.++...|.|.  |.   +.+.+.. ..........+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++
T Consensus        63 ~L~i~~~~~~d~G~--Y~---C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~  137 (191)
T 1epf_A           63 TLTIYNANIDDAGI--YK---CVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK  137 (191)
T ss_dssp             EEEECSCCGGGCEE--EE---EEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEET
T ss_pred             EEEEccCCcccCEE--EE---EEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEEC
Confidence            45566677777555  42   2333332 122222233445678888888888899999999999999999999999999


Q ss_pred             CEECCC--CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         95 NRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        95 ~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +..+..  ........++  .|.|.++...|+|.|+|.|.|..|.......+.|
T Consensus       138 ~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          138 GRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             TEEGGGGCCTTEEECTTS--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             CEEeeccCCceEEEecCC--eEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            998753  1122233344  6999999999999999999999876665555554

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.56  E-value=6.7e-14  Score=100.04  Aligned_cols=134  Identities=15%  Similarity=0.181  Sum_probs=91.8

Q ss_pred             CCceeEEEEeCCCCCCCCCCccc---ceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEec-cCCCeeE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQ---QVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTVK   90 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~   90 (168)
                      ..+.+.++...|.+.  |.|...   .........+.+. .....+|.+...+....+.+|+.+.|.|.+.+ .|.|.+.
T Consensus       144 ~~L~i~~v~~~d~G~--Y~C~a~~~~~~~~~~~~~l~V~-~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~  220 (289)
T 3ejj_X          144 RGFIIRKAKVLDSNT--YVCKTMVNGRESTSTGIWLKVN-RVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVI  220 (289)
T ss_dssp             TEEEESSCCGGGCEE--EEEEEEETTEEEECCCEEEEEE-SSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEE
T ss_pred             CCEEEeecccccCEE--EEEEEEeCCCccccccEEEEEE-ECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEE
Confidence            446677777777655  433322   1111122222222 12236788888888888889999999999998 7999999


Q ss_pred             EEeCCEECCCCCeEEEecC---CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         91 WYKGNRELSKRDYSMSYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        91 W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      |++++..+...........   ....|.|.++...|+|.|+|.|.|..|....++.|.+...+.
T Consensus       221 W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~~  284 (289)
T 3ejj_X          221 LKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHH  284 (289)
T ss_dssp             EEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC----
T ss_pred             EEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEeccc
Confidence            9999998865322111111   133799999999999999999999999999999998876554

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.56  E-value=4.1e-14  Score=102.16  Aligned_cols=96  Identities=21%  Similarity=0.413  Sum_probs=75.6

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEe-cC-CEEEEEEccCCC-CCCeEEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSY-SD-GVVSMEIIDCKP-EDSGEYKCVA  131 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-~~-~~~~l~i~~~~~-~d~G~Y~C~a  131 (168)
                      ..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...++.... .. ....|.|.++.. .|+|.|+|.+
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C~a   83 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVA   83 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEEEE
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEEEE
Confidence            56899999999999999999999999999999999999999888765554432 22 236899999998 9999999999


Q ss_pred             EeCCcceEEEEEEEEeeCC
Q psy12421        132 TNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~~p  150 (168)
                      .|..|.....+.|.|...+
T Consensus        84 ~n~~g~~~~~~~l~V~~~~  102 (304)
T 2yd9_A           84 QNSVGEITVHAKLTVLRED  102 (304)
T ss_dssp             ECSSCEECCEEEEEEECGG
T ss_pred             ECCCCeEEEEEEEEEeccc
Confidence            9999998888888887653

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=91.31  Aligned_cols=92  Identities=14%  Similarity=0.171  Sum_probs=74.3

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEE-ecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ++.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... ++.+. ..++...|.|.++..+|+|.|+|.    
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----   88 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE----   88 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEE----
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEE----
Confidence            457777888899999999999999999999999999999877653 23322 224445799999999999999998    


Q ss_pred             CcceEEEEEEEEeeCCCc
Q psy12421        135 HGTDETNCVVIVESEEES  152 (168)
Q Consensus       135 ~g~~~~~~~l~v~~~p~~  152 (168)
                      .|.....+.|.|..+|..
T Consensus        89 ~g~~~~~~~L~V~~~p~~  106 (115)
T 2cr6_A           89 AGDQRASAALRVTEKPSV  106 (115)
T ss_dssp             ETTEECCEEEEEECCSSC
T ss_pred             ECCeeEEEEEEEECCCce
Confidence            467777888999877653

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.56  E-value=5.4e-15  Score=102.31  Aligned_cols=92  Identities=15%  Similarity=0.324  Sum_probs=69.3

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEe----CCEECCCCCe--E-EEe-----cCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYK----GNRELSKRDY--S-MSY-----SDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~----~~~~~~~~~~--~-~~~-----~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      +....+..|+.+.|.|.+.+.|.|.+.|++    ++..+.....  . ...     ......|.|.++...|+|.|+|.|
T Consensus       125 ~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  204 (231)
T 3ojm_B          125 PANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV  204 (231)
T ss_dssp             SCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEE
T ss_pred             CCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEE
Confidence            456788899999999999999999999999    6665533211  1 110     011126999999999999999999


Q ss_pred             EeCCcceEEEEEEEEeeCCCchhh
Q psy12421        132 TNKHGTDETNCVVIVESEEESKEQ  155 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~~p~~~~~  155 (168)
                      .|..|....++.|.|...|..+..
T Consensus       205 ~n~~g~~~~~~~l~V~~~p~~p~~  228 (231)
T 3ojm_B          205 SNYIGQANQSAWLTVLPKQQAPGR  228 (231)
T ss_dssp             EETTEEEEEEEEEEEECCC-----
T ss_pred             EeccceEeeEEEEEEecCCCCCcc
Confidence            999999999999999988877654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.56  E-value=8e-14  Score=100.44  Aligned_cols=96  Identities=27%  Similarity=0.519  Sum_probs=81.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEE-ecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMS-YSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.+.+.|++++..+...  ++.+. ..++...|.|.+++..|+|.|+|.|.
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~   82 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRAT   82 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEE
Confidence            5789998999999999999999999999999999999999988643  33332 24556689999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeCCC
Q psy12421        133 NKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~p~  151 (168)
                      |..|.......|.|..+|.
T Consensus        83 n~~g~~~~~~~l~V~~~p~  101 (305)
T 2nzi_A           83 NQGGSVSGTASLEVEVPAK  101 (305)
T ss_dssp             ETTEEEEEEEEEEECEEEE
T ss_pred             cCCCCccceEEEEEecCCc
Confidence            9999988888888876554

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.56  E-value=8.7e-14  Score=94.19  Aligned_cols=95  Identities=22%  Similarity=0.273  Sum_probs=76.9

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCCCC---eEEEecCC-------EEEEEEccCCCCCCe
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKRD---YSMSYSDG-------VVSMEIIDCKPEDSG  125 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~---~~~~~~~~-------~~~l~i~~~~~~d~G  125 (168)
                      +|.|...+.+..+.+|+.+.|.|.+. |.|.+.+.|++++..+....   +.+.....       ...|.|.++...|+|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G   81 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTG   81 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTCE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEEccccccceeeccEEEEEeccccCCc
Confidence            67888889999999999999999999 99999999999999887642   22222221       357999999999999


Q ss_pred             EEEEEEEeCCcceEE-EEEEEEeeCCC
Q psy12421        126 EYKCVATNKHGTDET-NCVVIVESEEE  151 (168)
Q Consensus       126 ~Y~C~a~n~~g~~~~-~~~l~v~~~p~  151 (168)
                      .|.|.+.|..|.... .+.|.|..+|.
T Consensus        82 ~Y~C~~~~~~~~~~~~~~~l~V~~~p~  108 (195)
T 2c5d_C           82 QYQCLVFLGHQTFVSQPGYVGLEGLPY  108 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEECCSCE
T ss_pred             EEEEEEEeCCCceecccEEEEEecCCe
Confidence            999999998876544 37788877654

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.55  E-value=1.1e-13  Score=87.28  Aligned_cols=88  Identities=17%  Similarity=0.156  Sum_probs=66.4

Q ss_pred             CeEEecCCcEEEEEEEec--cCCCeeEEEeCCEECC------CCCeEEEec---CCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         66 PRVMQVRQTCKLLCCLSG--KPPPTVKWYKGNRELS------KRDYSMSYS---DGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g--~p~p~i~W~~~~~~~~------~~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ...+.+|+++.|.|.+.|  .|.+.+.|++++..+.      .........   .....|.|.+++..|+|.|+|.|.|.
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~n~   96 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSG   96 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             CEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccccccCCceeeEEEEEEECCCCcccCEEEEEEEccC
Confidence            357889999999999998  4557899999876432      111111111   12337999999999999999999999


Q ss_pred             CcceEEEEEEEEeeCCCch
Q psy12421        135 HGTDETNCVVIVESEEESK  153 (168)
Q Consensus       135 ~g~~~~~~~l~v~~~p~~~  153 (168)
                      .|.....+.|.|.++|...
T Consensus        97 ~g~~~~~~~l~V~~~p~i~  115 (122)
T 3s35_X           97 LMTKKNSTFVRVHEKPFVA  115 (122)
T ss_dssp             SCEEEEEEEEEEEEEECC-
T ss_pred             CCceEEEEEEEEeccCeEE
Confidence            9999999999998876543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.55  E-value=4.1e-14  Score=89.65  Aligned_cols=90  Identities=19%  Similarity=0.307  Sum_probs=68.3

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEEC---------CCCCeEEE-ecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---------SKRDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~---------~~~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .+....+.+|+++.|.|.+.+.|.+.+.|++.+..+         ...++.+. ...+..+|.|.+++.+|+|.|.|.+.
T Consensus         7 ~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~   86 (124)
T 3rbg_A            7 HTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYKCLHY   86 (124)
T ss_dssp             SEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEEEEEE
Confidence            344577889999999999999999999999765421         22333332 23344589999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeCCCch
Q psy12421        133 NKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      |. |.....+.|.|..+|...
T Consensus        87 n~-g~~~~~~~l~V~~~P~~~  106 (124)
T 3rbg_A           87 SD-SVSTKEVKVIVLATMKGE  106 (124)
T ss_dssp             SS-SEEEEEEEEEEECC----
T ss_pred             cC-CCCcEEEEEEEEeCCCCC
Confidence            99 988999999998877543

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.55  E-value=4.1e-14  Score=91.12  Aligned_cols=86  Identities=19%  Similarity=0.326  Sum_probs=66.7

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-----------CeEEE---ecCCEEEEEEcc
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-----------DYSMS---YSDGVVSMEIID  118 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-----------~~~~~---~~~~~~~l~i~~  118 (168)
                      ....+|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...           ...+.   .......|.|.+
T Consensus        17 ~~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   96 (137)
T 3qr2_A           17 RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTISIDT   96 (137)
T ss_dssp             ----CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEESSSEEEEEEECS
T ss_pred             CCCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccccccceEEEECC
Confidence            4457899999999999999999999999999999999999977654321           11111   011234799999


Q ss_pred             CCCCCCeEEEEEEEeCCcce
Q psy12421        119 CKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      +...|+|.|.|.|.|..|..
T Consensus        97 v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           97 LVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             CCGGGCEEEEEEEECCTTSS
T ss_pred             CCcccCEEEEEEEEecCCcc
Confidence            99999999999999999875

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.55  E-value=2.1e-14  Score=102.75  Aligned_cols=96  Identities=24%  Similarity=0.438  Sum_probs=74.4

Q ss_pred             cccCCCeEEeecC--CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC---eEEEecCCEEEEEEccCCCCCCeEE
Q psy12421         53 TVESAPNFTFLLR--PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD---YSMSYSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        53 ~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~---~~~~~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      .+..+|.+.....  ...+..|+.+.|.|.+.|.|.|.+.|++++..+....   ...........|.|.++...|+|.|
T Consensus       190 ~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  269 (291)
T 1qz1_A          190 IVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEY  269 (291)
T ss_dssp             EEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEE
T ss_pred             EEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEECCEECcCCCCCCcceEEcCCCcEEEEEecChhcCEEE
Confidence            3345666654332  3466789999999999999999999999999886542   1222223333799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEee
Q psy12421        128 KCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      +|.|.|..|.....+.|.|.+
T Consensus       270 ~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          270 VCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEeCCCceEEEEEEEEEc
Confidence            999999999999999988864

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.55  E-value=1.7e-14  Score=98.08  Aligned_cols=110  Identities=11%  Similarity=0.112  Sum_probs=78.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .+|.|...+.. .+.+|+.++|.|.+.+ +.+.+.|+|++..+...............|.|.+++..|+|.|+|.+.|..
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPV   81 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCCSSSSEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccccCCceEEEEeccCCcccCceEEEEEeCCC
Confidence            36778777776 8889999999999988 788999999997665321111111334479999999999999999999998


Q ss_pred             cc--eEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        136 GT--DETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       136 g~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      |.  ....+.|.|.+.+..+.....+...+.+|+
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~  115 (196)
T 3p2t_A           82 GWSQPSDPLELVMTGAYSKPTLSALPSPLVTSGK  115 (196)
T ss_dssp             EEBCCCCCEEEEEECSSCCCEEEEESCSEECTTC
T ss_pred             cccCCCccEEEEecCCCCCCEEEeCCcceecCCC
Confidence            83  345567777654443333333444666775

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.55  E-value=6.4e-14  Score=94.87  Aligned_cols=120  Identities=16%  Similarity=0.175  Sum_probs=86.7

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcc-eeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEe
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPL-QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYK   93 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~   93 (168)
                      .+.+.++...|.+.  |.|   .+.+.... ........+..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++
T Consensus        69 ~L~i~~~~~~d~G~--Y~C---~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~  143 (195)
T 2c5d_C           69 QLRITSLQLSDTGQ--YQC---LVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ  143 (195)
T ss_dssp             EEEESSCCSTTCEE--EEE---EEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEE
T ss_pred             EEEEEeccccCCcE--EEE---EEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEE
Confidence            46666777777555  422   22222211 111122345678888888888899999999999999999999 999999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE-EEEEEEE
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-TNCVVIV  146 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v  146 (168)
                      ++..+......    .....|.|.++.  |+|.|+|.|.|..|... ..+.|.|
T Consensus       144 ~~~~~~~~~~~----~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          144 DAVPLATAPGH----GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             SSCBSSSSTTS----SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCEeccCCCCc----CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            99887653321    223378998887  88999999999999886 6888887

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.55  E-value=1.9e-14  Score=103.16  Aligned_cols=130  Identities=13%  Similarity=0.217  Sum_probs=88.6

Q ss_pred             CCceeEEEEeCCCC-CCCCCCcccceeccC------cceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCC
Q psy12421         15 QDNPRLRTRAIPKT-IPAYVPEVQQVRRRE------PLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP   87 (168)
Q Consensus        15 ~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p   87 (168)
                      ..+.+.++...|.+ .  |.|   .+.+..      ...+.+. .....+|.+...+....+.+|+.+.|.|.+.|.|.|
T Consensus       145 ~~L~i~~v~~~d~G~~--Y~C---~a~n~~~~~~s~~~~l~V~-~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p  218 (290)
T 2o26_X          145 AGITIKNVKRAYHRLC--VRC---AAQRDGTWLHSDKFTLKVR-EAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTS  218 (290)
T ss_dssp             TEEEEESCCGGGTTCE--EEE---EEEETTEEEECCCEEEEEE-CCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTT
T ss_pred             CCEEEecccHHHCCCE--EEE---EEEECCceEEeEEEEEEEE-eCCCCCCccccCCCcceEecCCcEEEEEEEecCCcc
Confidence            45667778888866 5  432   222221      1222221 123478888877777888999999999999999999


Q ss_pred             e-eEEEeCCEEC----CC-CCeEEE---ecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421         88 T-VKWYKGNREL----SK-RDYSMS---YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus        88 ~-i~W~~~~~~~----~~-~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      . +.|++++..+    .. ......   .......|.|.++...|+|.|+|.|.|..|.....+.|.|.++|
T Consensus       219 ~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          219 VNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             CEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             eeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            6 9999998752    21 111111   11223479999999999999999999999999989988887654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.55  E-value=4.8e-14  Score=97.12  Aligned_cols=132  Identities=11%  Similarity=0.037  Sum_probs=84.0

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceec---cCcceeeEeeecccCCCeEEeecCC-eEEecCCcEEEEEEEeccC--CCe
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRR---REPLQITFWQETVESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKP--PPT   88 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p--~p~   88 (168)
                      ..+.+.+++..|.|.  |.|....-..   ...+.+.+   ....+|.+...+.. ..+.+|+++.|.|.+.|.|  .+.
T Consensus        64 ~~l~I~~v~~~D~G~--Y~C~a~n~~~~~~s~~~~l~v---~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~  138 (213)
T 2x1w_L           64 KGFTIPSYMISYAGM--VFCEAKINDESYQSIMYIVVV---VGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGID  138 (213)
T ss_dssp             TEEEEEGGGTTTCSE--EEEEEC----CEECCCEEEEE---CBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCE
T ss_pred             ccEEEccCChhcCce--EEEEEEECCeeEEEEEEEEEE---eCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceE
Confidence            456777888888766  4333221000   01112222   11234555555544 4899999999999999855  457


Q ss_pred             eEEEeCCEECCCCCe-E-EEe-------cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         89 VKWYKGNRELSKRDY-S-MSY-------SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        89 i~W~~~~~~~~~~~~-~-~~~-------~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      +.|++++..+..... . ...       ......|.|.+++.+|+|.|+|.|.|..|.....+.|.|.+.|.
T Consensus       139 i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~  210 (213)
T 2x1w_L          139 FNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPI  210 (213)
T ss_dssp             EEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEC---
T ss_pred             EEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEEecccc
Confidence            999998875432111 0 000       11133699999999999999999999999999999999987653

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.55  E-value=5.7e-14  Score=86.71  Aligned_cols=91  Identities=27%  Similarity=0.461  Sum_probs=73.1

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+.+..+.+|+++.|.|.+.+.  |.+.|++++..+.. .++.+...+....|.|.++..+|+|.|+|.|  
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a--   81 (108)
T 2dm7_A            6 SGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQDGTRCELQIHDLSVADAGEYSCMC--   81 (108)
T ss_dssp             CCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEEETTEEEEEESSCCTTTCSEEEEEE--
T ss_pred             CCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEecCCEEEEEECCCCcccCEEEEEEE--
Confidence            457888777888899999999999998765  78999999987764 4455555566667999999999999999998  


Q ss_pred             CCcceEEEEEEEEeeCCC
Q psy12421        134 KHGTDETNCVVIVESEEE  151 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~p~  151 (168)
                        +.....+.|.|..+|.
T Consensus        82 --~n~~~~~~l~V~~~p~   97 (108)
T 2dm7_A           82 --GQERTSATLTVRALPA   97 (108)
T ss_dssp             --TTEEEEEECEEECCCS
T ss_pred             --cCCEEEEEEEEecCCH
Confidence              4456777888877553

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.54  E-value=1.3e-14  Score=103.91  Aligned_cols=131  Identities=18%  Similarity=0.319  Sum_probs=85.6

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCc--ceeeEeeecccCCCeEEeecC--CeEEecCCcEEEEEEEeccCCCeeEE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREP--LQITFWQETVESAPNFTFLLR--PRVMQVRQTCKLLCCLSGKPPPTVKW   91 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~p~i~W   91 (168)
                      .+.+.++...|.+.  |.|   .+.+...  .........+..+|.+.....  ...+.+|+.+.|.|.+.|.|.|.+.|
T Consensus       154 ~L~i~~v~~~d~G~--Y~C---~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W  228 (291)
T 2wim_A          154 NLQILNINKSDEGI--YRC---EGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISW  228 (291)
T ss_dssp             CEEETTCCGGGCEE--EEE---EEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEE
T ss_pred             CEEEEecchhhCEE--EEE---EEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEE
Confidence            45566666666554  422   2222221  111222223345666544333  23566899999999999999999999


Q ss_pred             EeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421         92 YKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      ++++..+......... .....|.|.++...|+|.|+|.|.|..|....++.|.|..++..
T Consensus       229 ~~~g~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~~  288 (291)
T 2wim_A          229 FRNGKLIEENEKYILK-GSNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH  288 (291)
T ss_dssp             EETTEECCCTTTEEEC-STTCEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC------
T ss_pred             EECCEECcCCccEEEc-CCccEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEeccc
Confidence            9999988754322222 22237999999999999999999999999999999998876543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.54  E-value=2.6e-14  Score=103.41  Aligned_cols=93  Identities=24%  Similarity=0.385  Sum_probs=75.7

Q ss_pred             CCeEEee-cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEec-CCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         57 APNFTFL-LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYS-DGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        57 ~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~-~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      +|.+... +....+..|+.+.|.|.+.|.|.|.+.|++++..+... ++.+... +....|.|.++...|+|.|+|.|.|
T Consensus       221 ~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  300 (317)
T 2y25_A          221 RARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKYGLVVKN  300 (317)
T ss_dssp             SCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEEEEEEEE
T ss_pred             CCcccccCCccEEEEcCCEEEEEEEEecCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEe
Confidence            4555544 34468899999999999999999999999999887653 3343333 4456899999999999999999999


Q ss_pred             CCcceEEEEEEEEeeC
Q psy12421        134 KHGTDETNCVVIVESE  149 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~~  149 (168)
                      ..|.....+.|.|..+
T Consensus       301 ~~g~~~~~~~l~V~~P  316 (317)
T 2y25_A          301 KYGSETSDFTVSVFIP  316 (317)
T ss_dssp             TTEEEEEEEEEEEECC
T ss_pred             CCCeEEEEEEEEEEcC
Confidence            9999999999988743

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.54  E-value=1.2e-14  Score=99.31  Aligned_cols=96  Identities=24%  Similarity=0.415  Sum_probs=72.9

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEE-eccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ++.+...+....+..|+.+.|.|.+ .+.|.|.+.|++++..+..........++  .|.|.++..+|+|.|+|.|.|..
T Consensus       111 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~  188 (212)
T 2v9r_A          111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGG--KLMITYTRKSDAGKYVCVGTNMV  188 (212)
T ss_dssp             CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETT--EEEESSCCGGGCEEEEEEEEETT
T ss_pred             cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCC--eEEEeeCCHhhCeeEEEEEeccc
Confidence            3444445566788999999999998 89999999999999988653323333455  79999999999999999999999


Q ss_pred             cceEE-EEEEEEeeCCCchh
Q psy12421        136 GTDET-NCVVIVESEEESKE  154 (168)
Q Consensus       136 g~~~~-~~~l~v~~~p~~~~  154 (168)
                      |.... .+.|.|.++|....
T Consensus       189 g~~~s~~~~l~V~~~P~~~~  208 (212)
T 2v9r_A          189 GERESEVAELTVLERPSFVK  208 (212)
T ss_dssp             EEEECCCEEEEEEC------
T ss_pred             CceecceEEEEEEeCchHhh
Confidence            98765 47899988765443

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.54  E-value=2.9e-13  Score=90.81  Aligned_cols=96  Identities=23%  Similarity=0.445  Sum_probs=77.9

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEeccC-CCeeEEEe---CC-EECCC---CCeEEEecCCEEEEEEccCC-CCC
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYK---GN-RELSK---RDYSMSYSDGVVSMEIIDCK-PED  123 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~---~~-~~~~~---~~~~~~~~~~~~~l~i~~~~-~~d  123 (168)
                      .+..+|.+...+....+.+|+.+.|.|.+.|.| .|.+.|++   ++ ..+..   .++.+...++...|.|.++. ..|
T Consensus        79 ~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~~d  158 (184)
T 3b5h_A           79 QLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEAD  158 (184)
T ss_dssp             EECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTS
T ss_pred             EEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEecCCeeEEEEeecccccc
Confidence            445778888777777899999999999999999 89999999   44 44432   34555555666689999999 899


Q ss_pred             CeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        124 SGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       124 ~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      +|.|.|.|.|..|.....+.|.|.+
T Consensus       159 ~G~Y~C~a~N~~g~~~~~~~l~V~~  183 (184)
T 3b5h_A          159 PGQYRCNGTSSKGSDQAIITLRVRS  183 (184)
T ss_dssp             SEEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             CceEEEEEEeCCCcceEEEEEEEec
Confidence            9999999999999999888888764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=8.7e-15  Score=88.62  Aligned_cols=84  Identities=19%  Similarity=0.366  Sum_probs=67.5

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .+|.|...+.+..+.+|+.+.|.|.+.+.|.|.+.|++++..+....      ..  .|.|.++...|+|.|.|.+.|..
T Consensus         9 ~~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~------~~--~L~i~~v~~~d~G~Y~C~a~n~~   80 (96)
T 2ens_A            9 EEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPP------SP--VLILPEIGPQDQGTYSCVATHSS   80 (96)
T ss_dssp             CSCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCC------CS--EEEEESCCTTTCEEEECEECCSS
T ss_pred             CCCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCC------CC--EEEECCCCcccCEEEEEEEEeCC
Confidence            35677778888889999999999999999999999999987765431      22  79999999999999999999976


Q ss_pred             cceEE--EEEEEEe
Q psy12421        136 GTDET--NCVVIVE  147 (168)
Q Consensus       136 g~~~~--~~~l~v~  147 (168)
                      |....  .+.|.|.
T Consensus        81 ~~~~~s~~~~v~V~   94 (96)
T 2ens_A           81 HGPQESRAVSISII   94 (96)
T ss_dssp             CCCEECCCEEEEEC
T ss_pred             CCcEEEEEEEEEEe
Confidence            65444  4444443

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.53  E-value=3.7e-14  Score=102.36  Aligned_cols=93  Identities=29%  Similarity=0.506  Sum_probs=71.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+......   ..+...|.+.++  .|+|.|+|.|.|.
T Consensus       203 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~---~~~~~~L~i~~~--~d~G~Y~C~a~N~  277 (304)
T 2yd9_A          203 NVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDM---PVGRNVLELTDV--KDSANYTCVAMSS  277 (304)
T ss_dssp             CEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSC---CBSEEEEEECSC--CSCEEEEEEEEET
T ss_pred             ccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccc---cCCcEEEEEccc--ccCEEEEEEEEeC
Confidence            35788887777778899999999999999999999999999988654321   234345777665  5999999999999


Q ss_pred             CcceEEEEEEEEeeCCCc
Q psy12421        135 HGTDETNCVVIVESEEES  152 (168)
Q Consensus       135 ~g~~~~~~~l~v~~~p~~  152 (168)
                      .|....++.|.|.+.+..
T Consensus       278 ~G~~~~~~~l~V~~~~~~  295 (304)
T 2yd9_A          278 LGVIEAVAQITVKSLPKA  295 (304)
T ss_dssp             TEEEEEEEEEC-------
T ss_pred             CCcEEEEEEEEEecCccc
Confidence            999999999998876543

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.53  E-value=2e-13  Score=101.52  Aligned_cols=95  Identities=22%  Similarity=0.419  Sum_probs=78.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEECCC------CCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NRELSK------RDYSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~~~------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +|.|.. +.+..+.+|+.+.|.|.+.|.|.|.+.|+++  +..+..      .++.+....+...|.|.++...|+|.|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   79 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYD   79 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEE
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEE
Confidence            466664 6677888999999999999999999999999  877643      3344443345568999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeCCCc
Q psy12421        129 CVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus       129 C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      |.|.|..|.....+.|.|..+|..
T Consensus        80 C~a~n~~g~~~~~~~l~V~~~P~~  103 (389)
T 2jll_A           80 CEAASRIGGHQKSMYLDIEYAPKF  103 (389)
T ss_dssp             EEEECSSCEEEEEEEEEEEEEEEE
T ss_pred             EEEEeCCCCcceEEEEEEEeCCEE
Confidence            999999999988999999876643

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.53  E-value=1e-13  Score=92.79  Aligned_cols=118  Identities=19%  Similarity=0.228  Sum_probs=83.8

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCc-ceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEe
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREP-LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYK   93 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~   93 (168)
                      .+.+.++...|.+.  |.|.   +.+... .........+..+|.+...+....+.+|+.+.|.|.+.|.|.| .+.|++
T Consensus        61 ~L~i~~~~~~d~G~--Y~C~---~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~  135 (182)
T 1rhf_A           61 FLSLKSVERSDAGR--YWCQ---VEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR  135 (182)
T ss_dssp             EEEESSCCGGGCEE--EEEE---ESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEE
T ss_pred             EEEEeecCcccCeE--EEEE---EEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEc
Confidence            34566667777554  4322   222211 1112222344568998888888899999999999999999999 999999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE-EEEEEE
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIV  146 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v  146 (168)
                      ++..+.....      ....|.|.++  .|+|.|+|.|.|..|.... .+.|.|
T Consensus       136 ~~~~~~~~~~------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          136 GTTKIGGPAP------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHL  181 (182)
T ss_dssp             TTEECSCSEE------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeECCCCCC------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEe
Confidence            9988865321      2237888887  5899999999999998753 666665

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.53  E-value=5.9e-15  Score=100.88  Aligned_cols=127  Identities=17%  Similarity=0.189  Sum_probs=85.6

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEE-eccCCCeeEEEe
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYK   93 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~   93 (168)
                      ..|.+.+++..|.|.  |.|.   +.+............+..+|.+........+..|+.+.|.|.+ .|.|.|.+.|++
T Consensus        84 ~~L~i~~v~~~D~G~--Y~C~---~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~  158 (214)
T 3jz7_A           84 ASINVTNLQLSDIGT--YQCK---VKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQK  158 (214)
T ss_dssp             CCEEECSCCGGGCEE--EEEE---EEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEE
T ss_pred             ccEEEccCChhhCeE--EEEE---EEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEE
Confidence            447788888888666  4332   2232222222223344445554433333447789999999999 899999999999


Q ss_pred             CC--EECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeC
Q psy12421         94 GN--RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE  149 (168)
Q Consensus        94 ~~--~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  149 (168)
                      ++  ..+.... .....++  .|.|.++...|+|.|+|.|.|..|.....+.|.|..+
T Consensus       159 ~~~~~~~~~~~-~~~~~~~--~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~P  213 (214)
T 3jz7_A          159 LSDSQTMPTPW-LAEMTSP--VISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVVPP  213 (214)
T ss_dssp             CSTTCCCCGGG-GGGTTSS--EEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCBCC
T ss_pred             CCCCCccCccc-eeccCCC--EEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEeCC
Confidence            54  3332211 1111233  7999999999999999999999999999998888754

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.52  E-value=1.8e-13  Score=97.97  Aligned_cols=99  Identities=17%  Similarity=0.232  Sum_probs=75.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEec----CCEEEEEEccCCCCCCeEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYS----DGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~----~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      .+|.+...+....+.+|+++.|.|.+.|.|.|.+.|++++.......  ......    .....|.|.++..+|+|.|+|
T Consensus       180 ~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C  259 (289)
T 3mjg_X          180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTC  259 (289)
T ss_dssp             CCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEE
T ss_pred             CCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEE
Confidence            46777777777889999999999999999999999998765432211  111111    123479999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeCCCchh
Q psy12421        130 VATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus       130 ~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      .|.|..|....+..|.|...+....
T Consensus       260 ~a~N~~G~~~~~~~l~v~~~~~~~~  284 (289)
T 3mjg_X          260 NVTESVNDHQDEKAINITVVESGHH  284 (289)
T ss_dssp             EEEETTTTEEEEEEEEEEEEC----
T ss_pred             EeecCCCCceeEEEEEEEEEecCcc
Confidence            9999999999999999987765443

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.51  E-value=7.8e-14  Score=95.20  Aligned_cols=128  Identities=13%  Similarity=0.183  Sum_probs=84.0

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccC-cceeeEeeecc---cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRRE-PLQITFWQETV---ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVK   90 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~   90 (168)
                      ..+.+.++...|.|.  |.|.   +.+.. ..........+   ...|.+......  +..|+.+.|.|.+.+.| |.+.
T Consensus        71 ~~L~i~~v~~~D~G~--Y~C~---~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~  142 (208)
T 3r4d_A           71 GSLLFQMITMKDMGV--YTLD---MTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQ  142 (208)
T ss_dssp             SCEEECSCCGGGCEE--EEEE---EECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT-CEEE
T ss_pred             CeEEEccccccCCeE--EEEE---EEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC-CceE
Confidence            457788888888766  4332   22221 11111111122   233566544444  88899999999998866 8999


Q ss_pred             EEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE-EEEEEEeeCCCc
Q psy12421         91 WYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESEEES  152 (168)
Q Consensus        91 W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~  152 (168)
                      |++++..+.... +.+...++  .|.|.++...|+|.|+|.|.|..|.... .+.|.|..++..
T Consensus       143 W~~~g~~l~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~~~~~  204 (208)
T 3r4d_A          143 WLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHH  204 (208)
T ss_dssp             EEETTEECCCCSSEEEETTTT--EEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-----
T ss_pred             EEECCEeCCCCCCeEEcCCCC--EEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEeCCcc
Confidence            999999887543 33333334  7999999999999999999999998654 667777766543

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.51  E-value=3.3e-14  Score=97.08  Aligned_cols=129  Identities=19%  Similarity=0.211  Sum_probs=85.4

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccC--cceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEE-EeccCCCeeEE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRRE--PLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCC-LSGKPPPTVKW   91 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~-~~g~p~p~i~W   91 (168)
                      ..+.+.++...|.|.  |.|.   +.+..  ..........+..+|.+...+....+.+|+.+.|.|. +.+.|.|.+.|
T Consensus        65 ~~L~i~~v~~~D~G~--Y~C~---~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W  139 (212)
T 1f97_A           65 SGITFSSVTRKDNGE--YTCM---VSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSW  139 (212)
T ss_dssp             TEEEESCCCGGGCEE--EEEE---EEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEE
T ss_pred             eeEEEcccCcccCeE--EEEE---EEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEE
Confidence            445667788888665  4332   22221  1222222234445666655555677889999999999 78999999999


Q ss_pred             EeCCE-ECCCCCe--------EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce--EEEEEEEEee
Q psy12421         92 YKGNR-ELSKRDY--------SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD--ETNCVVIVES  148 (168)
Q Consensus        92 ~~~~~-~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~  148 (168)
                      ++++. .+.....        ..........|.|.++...|.|.|+|.|.|..|..  ...+.|.|.+
T Consensus       140 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V~~  207 (212)
T 1f97_A          140 FKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVE  207 (212)
T ss_dssp             EETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEEES
T ss_pred             EeCCcccccccccccccccCceeEecCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEEEE
Confidence            99998 7654211        11112222279999999999999999999999988  4455666654

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.50  E-value=4.4e-14  Score=95.19  Aligned_cols=95  Identities=22%  Similarity=0.397  Sum_probs=76.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      ..+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  .++.+...+.  .|.|.+++..|+|.|.|.+.
T Consensus         5 ~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~   82 (192)
T 2iep_A            5 PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIRENGQ--LLTILSVEDSDDGIYCCTAN   82 (192)
T ss_dssp             CEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEEGGGT--EEEESSCCGGGCEEEEEEEE
T ss_pred             CCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEcCCcc--EEEEcCCCcccCeEEEEEEE
Confidence            4567777777778899999999999999999999999999998764  3344333333  79999999999999999999


Q ss_pred             eCCcc-eEEEEEEEEeeCCC
Q psy12421        133 NKHGT-DETNCVVIVESEEE  151 (168)
Q Consensus       133 n~~g~-~~~~~~l~v~~~p~  151 (168)
                      |..|. ......|.|..+|.
T Consensus        83 ~~~~~~~~~~~~l~v~~~p~  102 (192)
T 2iep_A           83 NGVGGAVESCGALQVKMKPK  102 (192)
T ss_dssp             CSSSCCEEEEEEEEEEEEEE
T ss_pred             cCCCceeEeEEEEEEEeCCc
Confidence            99887 45566677765543

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.49  E-value=8.3e-14  Score=94.69  Aligned_cols=110  Identities=13%  Similarity=0.100  Sum_probs=70.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .+|.|...+. ..+.+|+++.|.|.+.+.|. .+.|+|++..+...............|.|.+++..|+|.|+|.+.|..
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~   81 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA   81 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCCSSTTEEEEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccccCCccccEEEeccCChhHCeEEEEEEeCCC
Confidence            4678877776 47889999999999988765 999999987664311111112334579999999999999999999988


Q ss_pred             cce--EEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        136 GTD--ETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       136 g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      |..  ...+.|.|...+..+.....+...+.+|+
T Consensus        82 g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~  115 (196)
T 2d3v_A           82 GWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGE  115 (196)
T ss_dssp             EECBCCCCEEEEEECSSCCCEEEC----------
T ss_pred             CcCCcCccEEEEecCCCCCCeEEccCCccccCCC
Confidence            753  34567777764333322222334666665

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.49  E-value=3.6e-13  Score=92.22  Aligned_cols=104  Identities=16%  Similarity=0.193  Sum_probs=73.9

Q ss_pred             EEeecCCeE-EecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         60 FTFLLRPRV-MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        60 ~~~~~~~~~-~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      +...+.+.. +.+|+++.|.|.+.|.|.|.+.|++....... . ..........|.|.+++..|+|.|.|.|.|..|..
T Consensus         3 v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~~-~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~   80 (202)
T 1vca_A            3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLN-G-KVTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKL   80 (202)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCS-S-EEEEETTEEEEEESSCCGGGCSEEEEEEEETTEEE
T ss_pred             EEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCcc-c-eEEEcCCccEEEECcCCHHHCEEEEEEEEECCceE
Confidence            334555544 44999999999999999999999984321111 1 12223344479999999999999999999999888


Q ss_pred             EEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        139 ETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       139 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      ...+.|.|..+|..+....  ...+.+|+
T Consensus        81 ~~~~~l~V~~~p~~~~~~~--~~~~~~G~  107 (202)
T 1vca_A           81 EKGIQVEIYSFPKDPEIHL--SGPLEAGK  107 (202)
T ss_dssp             EEEEEEEEEBCCSCCEEEE--SSCEETTS
T ss_pred             eeEEEEEEEeCCCCCEeCC--ceEEcCCC
Confidence            8888999987765443221  24566665

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.49  E-value=1.6e-13  Score=91.69  Aligned_cols=122  Identities=19%  Similarity=0.141  Sum_probs=80.5

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEe-ccCCCeeEEEe
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYK   93 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~   93 (168)
                      ..+.+.+++..|.|.  |.|............+.+     ..++.+. ......+.+|+.+.|.|.+. +.|.+.+.|++
T Consensus        51 ~~L~i~~v~~~d~G~--Y~C~~~~~~~s~~~~l~V-----~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  122 (176)
T 1f2q_A           51 SSLNIVNAKFEDSGE--YKCQHQQVNESEPVYLEV-----FSDWLLL-QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYK  122 (176)
T ss_dssp             SEEEECSCCGGGCEE--EEEECTTSSCCCCEEEEE-----ECSSEEE-EESCSEEETTSCEEEEEEEGGGCCEEEEEEEE
T ss_pred             eEEEEeccceecCEE--EEEEcCCccccccEEEEE-----eCcceee-cCCcceeeCCCCEEEEEEecCCCCceEEEEEE
Confidence            345566677777555  433322211122222222     2333333 34456788999999999995 66778999999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc-eEEEEEEEEeeCCC
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVVIVESEEE  151 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~p~  151 (168)
                      ++..+....     .++  .|.|.++..+|+|.|+|.|.|..+. ....+.|.|.++|.
T Consensus       123 ~g~~~~~~~-----~~~--~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          123 DGEALKYWY-----ENH--NISITNATVEDSGTYYCTGKVWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             TTEECCSCC-----CSS--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECSCC
T ss_pred             CCEEEeeec-----CCC--eEEECCCCcccCEEEEEEEEeCCcceEecCEEEEEecCCC
Confidence            998875321     223  7999999999999999999997544 45567888887764

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.49  E-value=6.3e-14  Score=101.52  Aligned_cols=94  Identities=16%  Similarity=0.280  Sum_probs=74.4

Q ss_pred             cCCCeEEeecCC-eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe-----EEEecC--------CEEEEEEccCC
Q psy12421         55 ESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-----SMSYSD--------GVVSMEIIDCK  120 (168)
Q Consensus        55 ~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-----~~~~~~--------~~~~l~i~~~~  120 (168)
                      ..+|.+...+.. ..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....     ......        ....|.|.++.
T Consensus       206 ~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  285 (315)
T 1itb_B          206 PTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIE  285 (315)
T ss_dssp             CCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCC
T ss_pred             CCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeecC
Confidence            467887655544 4688999999999999999999999999998865321     111111        12379999999


Q ss_pred             CCC-CeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        121 PED-SGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       121 ~~d-~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      ..| +|.|+|.|.|..|....++.|.|..
T Consensus       286 ~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  314 (315)
T 1itb_B          286 SRFYKHPFTCFAKNTHGIDAAYIQLIYPV  314 (315)
T ss_dssp             GGGGTSCEEEEEECTTCCEEEEEEEECCC
T ss_pred             HHHcCCceEEEEecCCCceeEEEEEEecC
Confidence            999 9999999999999999999888753

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.49  E-value=2.7e-13  Score=104.82  Aligned_cols=132  Identities=14%  Similarity=0.135  Sum_probs=94.6

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecC---CeEEecCCcEEEEEEEeccCCCe-eEE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLR---PRVMQVRQTCKLLCCLSGKPPPT-VKW   91 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---~~~~~~g~~~~l~C~~~g~p~p~-i~W   91 (168)
                      .+.+.++...|.|.  |   .+.+.+............+..+|.+...+.   ...+.+|+.+.|.|.+.|.|.|. +.|
T Consensus       274 ~L~I~~~~~~D~G~--Y---~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~~v~W  348 (524)
T 2ec8_A          274 TLTISSARVNDSGV--F---MCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQW  348 (524)
T ss_dssp             EEEESSCCTTTCEE--E---EEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCCEEEE
T ss_pred             EEEECCCCHHHCEE--E---EEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCcEEEE
Confidence            34556666666554  4   333334333333333345567788776554   57889999999999999999999 999


Q ss_pred             EeCCEECCCCC--eEEEecC----CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421         92 YKGNRELSKRD--YSMSYSD----GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus        92 ~~~~~~~~~~~--~~~~~~~----~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      ++++..+....  +.....+    ....|.|.++...|+|.|+|.|.|..|....++.|.|..+|..
T Consensus       349 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i  415 (524)
T 2ec8_A          349 IYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEI  415 (524)
T ss_dssp             ESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEE
T ss_pred             EECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeE
Confidence            99998876533  2211111    2457999999999999999999999999998999998776543

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.48  E-value=2.7e-13  Score=88.09  Aligned_cols=92  Identities=16%  Similarity=0.250  Sum_probs=72.0

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEE---------eCCEECCCCCeEEEe-cCCEEEEEEccCCCCCCeEEEEE
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWY---------KGNRELSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~---------~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ...+....+.+|+++.|.|.+.+.|.+.+.|+         +++..+...++.... .....+|.|.+++.+|+|.|.|.
T Consensus        42 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~  121 (145)
T 1z9m_A           42 QPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISISNVALADEGEYTCS  121 (145)
T ss_dssp             CCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEEEEEE
T ss_pred             ecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCCCeEEEEECCCChhhCEEEEEE
Confidence            34566788999999999999999999999999         444444444444322 33345899999999999999999


Q ss_pred             EEeCCcceEEEEEEEEeeCCCch
Q psy12421        131 ATNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       131 a~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      +.|. |.......|.|..+|..|
T Consensus       122 ~~n~-~~~~~~~~L~V~~~P~~P  143 (145)
T 1z9m_A          122 IFTM-PVRTAKSLVTVLGIPQKP  143 (145)
T ss_dssp             ECSS-SCEEEEEEEEEECCCC--
T ss_pred             EEcC-CCceEEEEEEEEeCCCCC
Confidence            9999 888889999999887654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.48  E-value=8.1e-14  Score=101.91  Aligned_cols=130  Identities=17%  Similarity=0.159  Sum_probs=85.4

Q ss_pred             CCCceeEEEEeCCCC-CCCCCCcccceeccCcc-eeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccC-CCeeE
Q psy12421         14 PQDNPRLRTRAIPKT-IPAYVPEVQQVRRREPL-QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKP-PPTVK   90 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~   90 (168)
                      ...|++.++...|.| .  |.|   .+.+.... ........+..+|.+........+.+|+.+.|.|.+.|.| .|.+.
T Consensus        88 ~~~L~i~~v~~~D~Gs~--Y~C---~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~  162 (329)
T 3oq3_B           88 NGDLWIANYTSNDSHRR--YLC---TVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNIT  162 (329)
T ss_dssp             TTEEEESSCCGGGGGCC--EEE---EEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEE
T ss_pred             cceEEEcCCChHhCCCc--EEE---EEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEE
Confidence            456777888888866 5  432   23332211 1111112233445544333333456799999999999999 99999


Q ss_pred             EEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC--CcceEEE----EEEEEeeCC
Q psy12421         91 WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK--HGTDETN----CVVIVESEE  150 (168)
Q Consensus        91 W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~--~g~~~~~----~~l~v~~~p  150 (168)
                      |++++..+..........++  .|.|.++...|+|.|+|.|.|.  .|.....    +.|.|..++
T Consensus       163 W~k~~~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~  226 (329)
T 3oq3_B          163 WYKNNQELIIDGTKYSQSGQ--NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQ  226 (329)
T ss_dssp             EEETTEECCCSSSSEEEETT--EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCC
T ss_pred             EEECCccCCCCCceEecCCC--EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCC
Confidence            99999988543222222344  7999999999999999999997  6654433    667777665

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.48  E-value=1.8e-13  Score=94.45  Aligned_cols=85  Identities=19%  Similarity=0.335  Sum_probs=71.6

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      +|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+....      ..  .|.|.++...|+|.|+|.|.|..|
T Consensus       118 ~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~------~~--~L~i~~v~~~d~G~Y~C~a~n~~g  189 (218)
T 3k0w_A          118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHET------KK--LYMVPYVDLEHQGTYWCHVYNDRD  189 (218)
T ss_dssp             SCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCC------SS--EEEESSCCGGGCEEEEEEEECSSC
T ss_pred             CceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCC------CC--EEEEeecChhcCEEEEEEEEcCCC
Confidence            3778778888899999999999999999999999999998886532      12  799999999999999999999988


Q ss_pred             c-eEEEEEEEEeeC
Q psy12421        137 T-DETNCVVIVESE  149 (168)
Q Consensus       137 ~-~~~~~~l~v~~~  149 (168)
                      . ....+.|.|...
T Consensus       190 ~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          190 SQDSKKVEIIIDEL  203 (218)
T ss_dssp             EEECCCEEEEECC-
T ss_pred             CceeeeEEEEEeCC
Confidence            7 455677777653

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.48  E-value=2.3e-13  Score=91.06  Aligned_cols=96  Identities=18%  Similarity=0.236  Sum_probs=72.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe-EEEecCC--EEEEEEccCCCCCCeEEEEEEEe
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSDG--VVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      +|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+..... .......  ...|.|.++...|+|.|.|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~   81 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVED   81 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESS
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEecCCCceEEEEEeecCcccCeEEEEEEEc
Confidence            46677777788899999999999999999999999999998876432 2222221  34799999999999999999999


Q ss_pred             CCcc-eEEEEEEEEeeCCCc
Q psy12421        134 KHGT-DETNCVVIVESEEES  152 (168)
Q Consensus       134 ~~g~-~~~~~~l~v~~~p~~  152 (168)
                      ..|. ....+.|.|..+|..
T Consensus        82 ~~~~~~~~~~~l~V~~~p~~  101 (182)
T 1rhf_A           82 GGETEISQPVWLTVEGVPFF  101 (182)
T ss_dssp             CTTCEECCCEEEEEECSCEE
T ss_pred             CCCcEEEEEEEEEEecCCeE
Confidence            8775 345777888776543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.47  E-value=2.6e-13  Score=93.10  Aligned_cols=126  Identities=12%  Similarity=0.066  Sum_probs=78.3

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEe
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYK   93 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~   93 (168)
                      ..+.+.++...|.|.  |.|............+     .+..+|.+...+ ...+.+|+.+.|.|.+.+. |.+.+.|++
T Consensus        54 ~~L~i~~v~~~D~G~--Y~C~a~n~~~s~~~~l-----~V~~~p~~~~~~-~~~v~~G~~v~L~C~~~~~~p~~~v~W~k  125 (204)
T 3sgj_C           54 SSYFIDAATVDDSGE--YRCQTQLSTLSDPVQL-----EVHIGWLLLQAP-RWVFKEEDPIHLRCHSWKNTALHKVTYLQ  125 (204)
T ss_dssp             SEEEESSCCGGGCEE--EEEEETTSBCCCCEEE-----EEECSSEEEECS-CSEEETTCCEEEEEEEGGGCCCEEEEEEE
T ss_pred             cEEEEecccccCCEE--EEEEeCCCcccccEEE-----EEecCceEecCC-ceeEeCCCcEEEEEEecCCCCCceEEEEE
Confidence            345556666666554  4333221111111222     233455554443 4778899999999999765 568899999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC-cceEEEEEEEEeeCCCchhh
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH-GTDETNCVVIVESEEESKEQ  155 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~~~p~~~~~  155 (168)
                      ++..+..     ....+  .|.|.++..+|+|.|+|.|.|.. +.....+.|.|.+++..+..
T Consensus       126 ~g~~~~~-----~~~~~--~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~P~i  181 (204)
T 3sgj_C          126 NGKGRKY-----FHHNS--DFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITITQGLAVSTI  181 (204)
T ss_dssp             TTEEEEE-----EEECC--CEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC-------
T ss_pred             CCcEeec-----ccCCc--eEEECcCCcccCEEEEEEEEeCCCceecCcEEEEEeCcCCCCcc
Confidence            9987532     11233  69999999999999999999954 44566778888877655443

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.47  E-value=8.8e-13  Score=88.75  Aligned_cols=96  Identities=20%  Similarity=0.384  Sum_probs=74.8

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccC-CCeeEEEe-CCEECCC--CCeEEEe-cCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYK-GNRELSK--RDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~-~~~~~~~--~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ++.|...+.+..+.+|+.+.|.|.+.+.+ .+.+.|++ ++..+..  .++.+.. ......|.|.++...|+|.|.|.+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~   81 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV   81 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCCceEEEEccCCcccCEEEEEEE
Confidence            56777888889999999999999999977 89999999 8776653  2333322 245568999999999999999999


Q ss_pred             EeCC-cceEEEEEEEEeeCCCc
Q psy12421        132 TNKH-GTDETNCVVIVESEEES  152 (168)
Q Consensus       132 ~n~~-g~~~~~~~l~v~~~p~~  152 (168)
                      .|.. +.....+.|.|..+|..
T Consensus        82 ~~~~~~~~~~~~~l~v~~~p~~  103 (191)
T 1epf_A           82 TAEDGTQSEATVNVKIFQKLMF  103 (191)
T ss_dssp             EETTTEEEEEEEEEEEECCSEE
T ss_pred             EcCCCcceEEEEEEEeecCceE
Confidence            9998 45566777777665443

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.47  E-value=4.9e-14  Score=109.54  Aligned_cols=124  Identities=8%  Similarity=-0.017  Sum_probs=86.0

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecC--CeEEecCCcEEEEEEEeccCCCeeEEEeC
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLR--PRVMQVRQTCKLLCCLSGKPPPTVKWYKG   94 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~--~~~~~~g~~~~l~C~~~g~p~p~i~W~~~   94 (168)
                      |.+.++...|.|.  |.|.   +.+.   ........+..+|.+...+.  ...+.+|+.+.|.|.+.|.|.|.+.|+|+
T Consensus       292 L~I~~v~~~DsG~--Y~C~---a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~  363 (527)
T 3qs9_E          292 AFVSSVARNDTGY--YTCS---SSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS  363 (527)
T ss_dssp             EEESSCCGGGCEE--EEEE---ETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEET
T ss_pred             EEEccCCcccCeE--EEEE---EEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEEC
Confidence            6677778888666  4322   2222   22222234445666654432  35577899999999999999999999999


Q ss_pred             CEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         95 NRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      +..+...... .....  .|.|.++...|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus       364 g~~l~~~~~~-~~~~~--~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P~  417 (527)
T 3qs9_E          364 RKSFPCEQKG-LDNGY--SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQ  417 (527)
T ss_dssp             TEEEECBCCB-CSSSS--EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCCE
T ss_pred             CEECcCCccc-ccCCc--EEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCCe
Confidence            9988553211 11233  789999999999999999999999999899998887664

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.47  E-value=5.7e-14  Score=106.43  Aligned_cols=128  Identities=9%  Similarity=0.025  Sum_probs=80.7

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeec--CCeEEecCCcEEEEEEEeccCCCeeEEEe
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLL--RPRVMQVRQTCKLLCCLSGKPPPTVKWYK   93 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~i~W~~   93 (168)
                      .|.+.++...|.|.  |.|   ...+.   ........+..+|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|+|
T Consensus       291 ~L~I~~v~~~D~G~--Y~C---~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k  362 (423)
T 3qs7_E          291 FAFVSSVARNDTGY--YTC---SSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTF  362 (423)
T ss_dssp             EEEESSCCTTTCEE--EEE---EETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEEEEEE
T ss_pred             EEEEeecCHHHCEE--EEE---EEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeEEEEE
Confidence            35666777777665  422   22232   2222233445567765544  34567789999999999999999999999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchh
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      ++..+.......  .+.. .+........|+|.|+|.|.|..|....++.|.|...|..+.
T Consensus       363 ~g~~l~~~~~~~--~~~~-~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~~~  420 (423)
T 3qs7_E          363 SRKSFPCEQKGL--DNGY-SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKHHH  420 (423)
T ss_dssp             TTEEEECBCCBC--SSSS-EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC---------
T ss_pred             CCEECCCccccc--cCCc-EEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCcccc
Confidence            999885432100  0110 222355677899999999999999999999999988876653

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.47  E-value=3.5e-13  Score=93.09  Aligned_cols=94  Identities=27%  Similarity=0.485  Sum_probs=75.8

Q ss_pred             cCCCeEEeec----CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC----eEEEecCCEEEEEEccCCCCCCeE
Q psy12421         55 ESAPNFTFLL----RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        55 ~~~p~~~~~~----~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~  126 (168)
                      ..+|.|...+    ....+.+|+.+.|.|.+.+.|.+.+.|++++..+....    ........  .|.|.+++..|+|.
T Consensus        13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~   90 (231)
T 3ojm_B           13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHW--SLIMESVVPSDKGN   90 (231)
T ss_dssp             CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGT--EEEECSCCGGGCEE
T ss_pred             ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceeeecCcc--eEEEecCCcccCEE
Confidence            3467776555    67889999999999999999999999999999875421    12222333  79999999999999


Q ss_pred             EEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        127 YKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       127 Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      |+|.+.|..|.......|.|...+
T Consensus        91 Y~C~~~n~~~~~~~~~~l~V~~~~  114 (231)
T 3ojm_B           91 YTCVVENEYGSINHTYHLDVVERS  114 (231)
T ss_dssp             EEEEEEETTEEEEEEEEEEEECCC
T ss_pred             EEEEEecccCcccccEEEEEEcCC
Confidence            999999999998888888887644

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.47  E-value=1.4e-12  Score=102.22  Aligned_cols=93  Identities=29%  Similarity=0.461  Sum_probs=83.9

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      ...+|.|...+.+..+..|+++.+.|.+.|.|.|.+.|++++..+.. .++.+...+..++|.|.++...|+|.|+|.|.
T Consensus       479 ~~~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~~~~~~~L~I~~~~~~D~G~Yt~~A~  558 (573)
T 3uto_A          479 SEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAK  558 (573)
T ss_dssp             GGGSCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             cccCCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEEcCCEEEEEEcCCCcccCcEEEEEEE
Confidence            34578888888899999999999999999999999999999999865 45667777888899999999999999999999


Q ss_pred             eCCcceEEEEEEEE
Q psy12421        133 NKHGTDETNCVVIV  146 (168)
Q Consensus       133 n~~g~~~~~~~l~v  146 (168)
                      |..|..+..+.|.|
T Consensus       559 N~~G~~~~~v~l~V  572 (573)
T 3uto_A          559 NSYGTKEEIVFLNV  572 (573)
T ss_dssp             ETTEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEEE
Confidence            99999999998877

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.47  E-value=2.7e-13  Score=91.06  Aligned_cols=114  Identities=12%  Similarity=0.136  Sum_probs=82.7

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      +.+.+++..|.|.  |.|.......  ...+.+.        .+ ..+....+.+|+.+.|.|.+.+.|.|.+.|++++.
T Consensus        70 L~i~~v~~~D~G~--Y~C~~~~~~~--~~~l~V~--------~~-~~~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~  136 (184)
T 2ny1_B           70 LIIKNLKIEDSDT--YICEVEDQKE--EVQLLVF--------GL-TANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRG  136 (184)
T ss_dssp             EEECSCCGGGCEE--EEEEETTEEE--EEEEEEE--------EE-EESSCSEEETTCCEEEEEECCTTCCCEEEEECTTS
T ss_pred             EEEecCCHHHCEE--EEEEEEcCCC--cEEEEEE--------Ee-cCCCCceeecCCCEEEEEEcCCCCCCEEEEEeCCC
Confidence            7788888888666  4333322211  1222222        11 12445678899999999999999999999999864


Q ss_pred             ECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421         97 ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus        97 ~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      .+       ....+  .|.|.++..+|+|.|+|.|.|..+.....+.|.|.+.|..
T Consensus       137 ~~-------~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          137 KN-------IQGGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKA  183 (184)
T ss_dssp             CE-------EEESS--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCC-
T ss_pred             cc-------ccCce--EEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEEecCCC
Confidence            32       12333  7999999999999999999999999999999999887754

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.47  E-value=3e-13  Score=100.90  Aligned_cols=92  Identities=25%  Similarity=0.491  Sum_probs=70.9

Q ss_pred             CCeEEe-ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-ECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTF-LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-ELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +|.+.. .+....+.+|+.+.|.|.+.|.|.|.+.|++++. .+... .......+  .|.|.++..+|+|.|+|.|.|.
T Consensus       204 ~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~-~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~  280 (384)
T 3kld_A          204 EPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARK-ARRHKSNG--ILEIPNFQQEDAGSYECVAENS  280 (384)
T ss_dssp             EEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTT-CEECTTSC--EEEECSCCGGGCEEEEEEEEET
T ss_pred             CCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCcccccc-ceecCCCc--EEEECCCChhhCEEEEEEEEcC
Confidence            344443 3445678899999999999999999999999543 44332 22222334  7999999999999999999999


Q ss_pred             CcceEEEEEEEEeeCCC
Q psy12421        135 HGTDETNCVVIVESEEE  151 (168)
Q Consensus       135 ~g~~~~~~~l~v~~~p~  151 (168)
                      .|.......|.|..+|.
T Consensus       281 ~G~~~~~~~l~v~~~P~  297 (384)
T 3kld_A          281 RGKNVAKGQLTFYAQPN  297 (384)
T ss_dssp             TEEEEEEEEEEEEEEEE
T ss_pred             CCeEEEEEEEEEecCCc
Confidence            99998888888877654

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.47  E-value=3e-13  Score=96.74  Aligned_cols=130  Identities=16%  Similarity=0.202  Sum_probs=88.5

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCc-ceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREP-LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG   94 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~   94 (168)
                      .+.+.++...|.|.  |.|   .+.+... .........+..+|.+...+....+.+|+.+.|.|.+.|.|.|.+.|+++
T Consensus        63 ~L~i~~~~~~D~G~--Y~C---~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~  137 (291)
T 1qz1_A           63 TLTIYNANIDDAGI--YKC---VVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHK  137 (291)
T ss_dssp             EEEECSCCGGGCEE--EEE---EEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEET
T ss_pred             EEEEecCCCCCCEE--EEE---EEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEEC
Confidence            45566677777555  422   2333221 11222223445678888888888899999999999999999999999999


Q ss_pred             CEECCCC--CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce--EEEEEEEEeeCCCc
Q psy12421         95 NRELSKR--DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD--ETNCVVIVESEEES  152 (168)
Q Consensus        95 ~~~~~~~--~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p~~  152 (168)
                      +..+...  .......++  .|.|.++...|+|.|+|.+.|..+..  ...+.|.|..+|..
T Consensus       138 ~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~  197 (291)
T 1qz1_A          138 GRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTV  197 (291)
T ss_dssp             TSCSSTTCCTTEEECTTS--CEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEE
T ss_pred             CEEcccCCCceEEEccCC--cEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcc
Confidence            9876431  122223344  69999999999999999999986543  34556666655443

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.46  E-value=8.4e-13  Score=89.00  Aligned_cols=91  Identities=21%  Similarity=0.316  Sum_probs=73.0

Q ss_pred             CCCeEEeecCCeEEec-CCcEEEEEEEeccCC--CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQV-RQTCKLLCCLSGKPP--PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~-g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .+|.|.. +....+.+ |+.+.|.|.+.+.|.  +.+.|++++..+.......    ....|.|.++...|+|.|.|.+.
T Consensus         2 ~~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~~~   76 (190)
T 2wv3_A            2 NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA----SNMEYRINKPRAEDSGEYHCVYH   76 (190)
T ss_dssp             -CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC----SEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe----ccEEEEEecCCcccCEEEEEEEE
Confidence            4677765 44455556 999999999999887  8899999999887644321    33489999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeCCCc
Q psy12421        133 NKHGTDETNCVVIVESEEES  152 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~p~~  152 (168)
                      |. |.....+.|.|..+|..
T Consensus        77 n~-~~~~~~~~l~V~~~p~~   95 (190)
T 2wv3_A           77 FV-SAPKANATIEVKAAPDI   95 (190)
T ss_dssp             ET-TEEEEEEEEEEECCCEE
T ss_pred             eC-CcccccEEEEEecCCcc
Confidence            99 88888888998876643

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.46  E-value=2.6e-13  Score=98.79  Aligned_cols=97  Identities=24%  Similarity=0.272  Sum_probs=74.5

Q ss_pred             ecccCCCeEEeec-CCeEEecCCcEEEEEEEeccCCCe-eEEEeCCEECCCCCeEEEecCCEEEEEEc-cCCCCCCeEEE
Q psy12421         52 ETVESAPNFTFLL-RPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEII-DCKPEDSGEYK  128 (168)
Q Consensus        52 ~~~~~~p~~~~~~-~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~l~i~-~~~~~d~G~Y~  128 (168)
                      ..+..+|.+...+ ....+..|+.+.|.|.+.|.|.|. +.|++++..+....   ...++  .|.|. ++...|+|.|+
T Consensus       226 l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~---~~~~~--~L~i~~~v~~~d~G~Y~  300 (331)
T 3u83_A          226 LNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGV---EAQNR--TLFFKGPINYSLAGTYI  300 (331)
T ss_dssp             CCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTE---EEETT--EEEECSCCCGGGCEEEE
T ss_pred             EEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccc---eecCc--EEEEeCCCccccCeEEE
Confidence            3445567766443 345578899999999999999998 99999998775432   22344  79999 89999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeCCCch
Q psy12421        129 CVATNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       129 C~a~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      |.|.|..|.....+.|.|...+...
T Consensus       301 C~a~N~~G~~~~~~~l~V~~~~~~~  325 (331)
T 3u83_A          301 CEATNPIGTRSGQVEVNITEAAALE  325 (331)
T ss_dssp             EEEEETTEEEEEEEEECCBC-----
T ss_pred             EEEEeccccceEEEEEEEeccchhh
Confidence            9999999999999999998766543

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=3.3e-13  Score=82.36  Aligned_cols=80  Identities=18%  Similarity=0.341  Sum_probs=64.6

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      +..+.+|+.+.|.|.+. .|.+.+.|+|++..+.. .++.+...+....|.|.++...|+|.|+|.|.    ....++.|
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~----~~~~~~~l   94 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRRLVVQQAGQAEAGEYSCEAG----GQQLSFRL   94 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEEETTEEEEEETTCCTTTCSCEEEEET----TEECCEEE
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEEcCCEEEEEECCCCcccCEEEEEEcC----CCcEEEEE
Confidence            35788999999999997 88999999999998865 34455545555689999999999999999984    44566788


Q ss_pred             EEeeCC
Q psy12421        145 IVESEE  150 (168)
Q Consensus       145 ~v~~~p  150 (168)
                      .|.+++
T Consensus        95 ~V~~p~  100 (102)
T 2eo1_A           95 QVAGQC  100 (102)
T ss_dssp             EEESCC
T ss_pred             EEeCCC
Confidence            887765

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.46  E-value=4.7e-15  Score=119.10  Aligned_cols=136  Identities=21%  Similarity=0.330  Sum_probs=0.0

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcc-eeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPL-QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN   95 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~   95 (168)
                      +.+.++...|.|.+.+  ........... ....+...+..+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+|++
T Consensus       627 L~i~~~~~~d~G~Y~C--~a~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~g  704 (772)
T 3v2a_R          627 MELKNASLQDQGDYVC--LAQDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDN  704 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEECCCCccCCcEEEE--EEEeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeCccCCCeEEEEECC
Confidence            7788899999776443  32221111100 01111112356788888888888999999999999999999999999999


Q ss_pred             EECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchhh
Q psy12421         96 RELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ  155 (168)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~  155 (168)
                      ..+..... +....+...|.|.++..+|+|.|+|.|.|..|....++.|.|.++|.....
T Consensus       705 ~~l~~~~~-~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~~  763 (772)
T 3v2a_R          705 ETLVEDSG-IVLKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEKTNL  763 (772)
T ss_dssp             ------------------------------------------------------------
T ss_pred             eECcCCCC-eEEcCCCcEEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEECCCCcccc
Confidence            88765432 112222337999999999999999999999999999999999988776544

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.46  E-value=5.6e-13  Score=89.45  Aligned_cols=93  Identities=19%  Similarity=0.451  Sum_probs=68.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+..  ........++  .|.|.++...|+|.|.|.+.|.
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~~~~~   79 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--NLQILNINKSDEGIYRCEGRVE   79 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEECTTS--CEEETTCCGGGCEEEEEEEEET
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEecCC--CEEEeeCCHhHCcEEEEEEEEc
Confidence            57888888899999999999999999999999999999877643  1212222334  6999999999999999999998


Q ss_pred             CcceE--EEEEEEEeeCCC
Q psy12421        135 HGTDE--TNCVVIVESEEE  151 (168)
Q Consensus       135 ~g~~~--~~~~l~v~~~p~  151 (168)
                      .+...  ....+.+..+|.
T Consensus        80 ~~~~~~~~~~~l~v~~~p~   98 (189)
T 2v5t_A           80 ARGEIDFRDIIVIVNVPPA   98 (189)
T ss_dssp             TTTEEEEEEEEEEEEEEEE
T ss_pred             CCCceEEEEEEEEecCCCC
Confidence            75543  344555655543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.46  E-value=3.6e-13  Score=90.69  Aligned_cols=103  Identities=13%  Similarity=0.076  Sum_probs=74.3

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ...+|.|...+.. .+.+|+++.|.|.+.+ +.+.+.|+|++..       .....+  .|.|.+++..|+|.|+|.+.|
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~-------~~~~~~--~L~i~~v~~~D~G~Y~C~a~n   73 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS-------RYQDQA--VLFIPAMKRSLAGRYRCSYQN   73 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC-------CEESSS--EEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc-------ccCccc--EEEECcCChhhCceEEEEEEc
Confidence            3457888777764 8899999999999888 8899999999854       112333  799999999999999999999


Q ss_pred             CCcce--EEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        134 KHGTD--ETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       134 ~~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      ..|..  ...+.|.|......+.....+...+.+|+
T Consensus        74 ~~g~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~  109 (184)
T 2gi7_A           74 GSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGG  109 (184)
T ss_dssp             TTEEBCCCCCEEEEEESSSCCCEEEEECCCSSCCTT
T ss_pred             CCCccCCCCCEEEEecCcCCCCEEEeCCCceecCCC
Confidence            87642  34566777554333333233444666665

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.46  E-value=3.4e-14  Score=102.68  Aligned_cols=97  Identities=20%  Similarity=0.264  Sum_probs=74.9

Q ss_pred             ecccCCCeEEeecC-CeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEE
Q psy12421         52 ETVESAPNFTFLLR-PRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        52 ~~~~~~p~~~~~~~-~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      ..+..+|.+...+. ...+..|+.+.|.|.+.|.|.| .+.|+|++..+.....   ..++ ..|.|.+++..|+|.|+|
T Consensus       206 l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~---~~~~-~~l~i~~v~~~d~G~Y~C  281 (308)
T 4fom_A          206 LDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLL---ASDN-TLHFVHPLTFNYSGVYIC  281 (308)
T ss_dssp             CCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCB---CSTT-EEECCSCCCSCCCSEEEE
T ss_pred             EEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEE---EcCC-eEEEECCCChhhCEEEEE
Confidence            35566777765443 3566778999999999999998 6999999877654321   1223 256788899999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeCCCc
Q psy12421        130 VATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus       130 ~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      .|.|..|....++.|.|.++|+.
T Consensus       282 ~A~N~~G~~~~~~~l~V~~~P~~  304 (308)
T 4fom_A          282 KVTNSLGQRSDQKVIYISDPPHH  304 (308)
T ss_dssp             EEEETTEEEEEEEECCEECCC--
T ss_pred             EEEeCCCcEEEEEEEEEEcCCCC
Confidence            99999999999999999998864

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.46  E-value=1.5e-13  Score=96.26  Aligned_cols=127  Identities=16%  Similarity=0.179  Sum_probs=79.4

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCc--ceeeEeeeccc---CCCeEEee-cCCeEEecCCcEEEEEEEeccCCCe
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREP--LQITFWQETVE---SAPNFTFL-LRPRVMQVRQTCKLLCCLSGKPPPT   88 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~---~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~   88 (168)
                      ..|.+.+++..|.|.  |.|..........  .....+...+.   .+|.+... +....+.+|+.+.|.|.+.+.|.|.
T Consensus        90 ~~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~  167 (250)
T 2fbo_J           90 PTLRLTHVHPQDGGR--YWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANAN  167 (250)
T ss_dssp             CCEEECSCCGGGCEE--EEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCE
T ss_pred             ceEEEeeCChhhCeE--EEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCe
Confidence            368888999999776  4333322111111  11111112222   23444433 3346667899999999999999999


Q ss_pred             eEEEeCCEECCCCC-----------------------eEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeCCc---ceEEE
Q psy12421         89 VKWYKGNRELSKRD-----------------------YSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHG---TDETN  141 (168)
Q Consensus        89 i~W~~~~~~~~~~~-----------------------~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g---~~~~~  141 (168)
                      +.|++++..+....                       ..... ...  .|.|.++..+|+|.|+|.|.|..|   ....+
T Consensus       168 v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~  245 (250)
T 2fbo_J          168 VTWYTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGAR--NLVIRAAKITDAGRVWCELATGQGELDADRSS  245 (250)
T ss_dssp             EEEEEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTT--EEEECSCCGGGCEEEEEEEESSSSGGGEEEEE
T ss_pred             eEEEeCCCcccccccCcceeEeccCCCCccccCceEecccccCCcc--EEEEecCCcccCEEEEEEecCCccccCcccee
Confidence            99999988664311                       00111 123  799999999999999999999555   44555


Q ss_pred             EEEE
Q psy12421        142 CVVI  145 (168)
Q Consensus       142 ~~l~  145 (168)
                      +.|.
T Consensus       246 ~~l~  249 (250)
T 2fbo_J          246 TILK  249 (250)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            5543

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.45  E-value=6e-14  Score=102.38  Aligned_cols=89  Identities=18%  Similarity=0.376  Sum_probs=69.1

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEe----CCEECCCCCe---EEEec-------CCEEEEEEccCCCCCCeEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYK----GNRELSKRDY---SMSYS-------DGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~----~~~~~~~~~~---~~~~~-------~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      +....+.+|+.+.|.|.+.|.|.|.+.|++    ++..+.....   .+...       .....|.|.++...|+|.|+|
T Consensus       229 ~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C  308 (334)
T 1ry7_B          229 PANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTC  308 (334)
T ss_dssp             SCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEE
T ss_pred             CCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEE
Confidence            456788999999999999999999999999    5555432211   11111       111269999999999999999


Q ss_pred             EEEeCCcceEEEEEEEEeeCCCc
Q psy12421        130 VATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus       130 ~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      .|.|..|....++.|.|...+..
T Consensus       309 ~a~N~~G~~~~~~~l~V~~~~~~  331 (334)
T 1ry7_B          309 LAGNSIGFSHHSAWLVVLPAEEE  331 (334)
T ss_dssp             EEEESSCCEEEEEEEEEECSCCC
T ss_pred             EEeCCCCeEEEEEEEEEEECCCC
Confidence            99999999999999999876643

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.44  E-value=4.4e-13  Score=92.09  Aligned_cols=90  Identities=27%  Similarity=0.452  Sum_probs=70.3

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEE-eccCCCeeEEEeCCEECCC--------CCeEEEecCCEEEEEEccCCCCCCeEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSK--------RDYSMSYSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~--------~~~~~~~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      +|.+...+....+..|+.+.|.|.+ .|.|.|.+.|++++..+..        .........+  .|.|.++..+|+|.|
T Consensus       108 ~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y  185 (217)
T 2vr9_A          108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRIVDGG--NLLISNVEPIDEGNY  185 (217)
T ss_dssp             CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEEETTT--EEEESSCCSTTCEEE
T ss_pred             CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEecCCC--cEEEeeCCHHHCeEE
Confidence            4455555667788999999999998 8999999999999988762        1112222344  799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEee
Q psy12421        128 KCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      +|.|.|..|....+..+.+..
T Consensus       186 ~C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          186 KCIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEcccceeccccEEEEEE
Confidence            999999999987766555544

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.43  E-value=1.3e-12  Score=105.89  Aligned_cols=97  Identities=24%  Similarity=0.436  Sum_probs=80.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eEEE---ec--CCEEEEEEccCCCCCCeEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMS---YS--DGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~---~~--~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      ..+|.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.... +...   ..  .....|.|.++...|+|.|+
T Consensus       427 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  506 (816)
T 3dmk_A          427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK  506 (816)
T ss_dssp             SCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEE
T ss_pred             cCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEE
Confidence            467888888888889999999999999999999999999999886533 2211   11  22346999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeCCC
Q psy12421        129 CVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       129 C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      |.|.|..|....+..|.|..+|.
T Consensus       507 C~a~n~~g~~~~~~~l~V~~~p~  529 (816)
T 3dmk_A          507 CIAKSKVGVAEHSAKLNVYGLPY  529 (816)
T ss_dssp             EEEEETTEEEEEEEEEEECSSCE
T ss_pred             EEEEECCCeEEEEEEEEEecCCe
Confidence            99999999999999999987663

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.43  E-value=4.9e-13  Score=99.68  Aligned_cols=134  Identities=23%  Similarity=0.384  Sum_probs=91.9

Q ss_pred             CCCceeEEEEeCCC-CCCCCCCccc-----ceeccCcceeeEeee--cccCCCeEEeec---CCeEEecCCcEEEEEEEe
Q psy12421         14 PQDNPRLRTRAIPK-TIPAYVPEVQ-----QVRRREPLQITFWQE--TVESAPNFTFLL---RPRVMQVRQTCKLLCCLS   82 (168)
Q Consensus        14 ~~~~~~~~~~~~d~-~~~~~~~~~~-----~~~~~~~~~~~~~~~--~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~~   82 (168)
                      ...+++.++...|. +.  |.|...     .......+.+.+...  ....+|.+....   ....+.+|+.+.|.|.+.
T Consensus       170 ~~~l~i~~v~~~d~~G~--Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~  247 (404)
T 3p3y_A          170 NGDLYFSNVMLQDMQTD--YSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIAS  247 (404)
T ss_dssp             TSCEEESSCCSGGGSSC--BEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBC
T ss_pred             CCcEEEEeeeeccCCcc--eEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEEC
Confidence            44567777777773 54  433221     111122233333211  112344443322   235688999999999999


Q ss_pred             ccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         83 GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        83 g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      |.|.|.+.|++++..+..........++  .|.|.++...|+|.|+|.|.|..|.....+.|.|..+|.
T Consensus       248 g~p~~~v~W~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  314 (404)
T 3p3y_A          248 GVPTPDIAWYKKGGDLPSDKAKFENFNK--ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPY  314 (404)
T ss_dssp             CSSCCEEEEEETTBCCCTTTEEEEGGGT--EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEE
T ss_pred             CCCCCcEEEEECCEECCCCcccccccCc--eEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCe
Confidence            9999999999999888765544444444  799999999999999999999999988889998887653

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.43  E-value=6.2e-13  Score=99.20  Aligned_cols=134  Identities=18%  Similarity=0.286  Sum_probs=91.3

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceec---cCcceeeEeeec-ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCee
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRR---REPLQITFWQET-VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTV   89 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i   89 (168)
                      ...+.+.++...|.+.  |.|.......   .....+.+.... ...++.+...+....+.+|+.+.|.|.+.+.|.|.+
T Consensus       176 ~~~L~i~~~~~~d~G~--Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~  253 (403)
T 3laf_A          176 SGALQISRLQPGDSGV--YRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSF  253 (403)
T ss_dssp             TSCEEECSCCGGGCEE--EEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEE
T ss_pred             CceEEEcccccccCEE--EEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeE
Confidence            3456677777777655  4322211111   111222222111 111234555666788889999999999999999999


Q ss_pred             EEEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         90 KWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        90 ~W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      .|++++..+.... ......++  .|.|.++...|+|.|+|.|.|..|.......|.|..+|.
T Consensus       254 ~W~~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  314 (403)
T 3laf_A          254 TWLRGEEVIQLRSKKYSLLGGS--NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPW  314 (403)
T ss_dssp             EEEETTEECCCSSSSEEEETTT--EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             EEEECCeeccCCCceEEECCcc--EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCc
Confidence            9999999876532 22233344  799999999999999999999999998899998877653

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.43  E-value=1.7e-12  Score=102.66  Aligned_cols=118  Identities=13%  Similarity=0.145  Sum_probs=85.7

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcce-eeEeeeccc-CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQ-ITFWQETVE-SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK   93 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~   93 (168)
                      .+.+.++...|.|.  |.+   .+.+..... .......+. .|+.+...+.+..+..|+.+.|.|.+.|.|.|.+.|++
T Consensus       521 ~L~i~~v~~~d~G~--Y~C---~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~  595 (642)
T 1e07_A          521 TLTLFNVTRNDARA--YVC---GIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQYSWRI  595 (642)
T ss_pred             EEEEeecChhcCce--EEE---EeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeEEEEE
Confidence            56677777777665  432   222222211 111111222 34456666777889999999999999999999999999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      +|..+...        .  .|.|.++...|+|.|+|.|.|..|....++.|.|..
T Consensus       596 ~g~~i~~~--------~--~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~v  640 (642)
T 1e07_A          596 NGIPQQHT--------Q--VLFIAKITPNNNGTYACFVSNLATGRNNSIVKSITV  640 (642)
T ss_pred             CCEECccC--------c--eEEECcccccCCeEEEEEEEecccCcceeEEEEEEE
Confidence            99877542        2  689999999999999999999999998888887764

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.43  E-value=7.7e-13  Score=102.25  Aligned_cols=151  Identities=13%  Similarity=0.182  Sum_probs=99.0

Q ss_pred             CCCceeEEEEeCCCC-CCCCCCcccceecc---CcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCe-
Q psy12421         14 PQDNPRLRTRAIPKT-IPAYVPEVQQVRRR---EPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-   88 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-   88 (168)
                      ...+.+.++...|.+ .  |.|....-...   ....+.+. .....+|.|...+....+.+|+.+.|.|.+.|.|.|. 
T Consensus       167 ~~~L~i~~~~~~d~G~~--Y~C~a~n~~~~~~s~~~~l~V~-~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~  243 (524)
T 2ec8_A          167 KAGIMIKSVKRAYHRLC--LHCSVDQEGKSVLSEKFILKVR-PAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVY  243 (524)
T ss_dssp             TTEEEEESCCGGGTTCE--EEEEEC----CCCCCCEECCEE-CCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCE
T ss_pred             CccEEEeccchhhCCce--EEEEEEECCceEEEEEEEEEEE-eCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEE
Confidence            345667778888866 5  43222111111   11222221 1224688998888888899999999999999999887 


Q ss_pred             eEEEeCCEEC--CCCCeEEEe----cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchhhhh-hhhh
Q psy12421         89 VKWYKGNREL--SKRDYSMSY----SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQQE-LAHN  161 (168)
Q Consensus        89 i~W~~~~~~~--~~~~~~~~~----~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~-~~~~  161 (168)
                      +.|++++..+  .........    ......|.|.++...|+|.|+|.|.|..|.....+.|.|..+|.....+. ....
T Consensus       244 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~  323 (524)
T 2ec8_A          244 STWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTV  323 (524)
T ss_dssp             EEEEETTCSCCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEE
T ss_pred             EEEEeCCCCCccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceE
Confidence            9999998763  221111111    11234799999999999999999999999998899999987765433221 1234


Q ss_pred             cccCCC
Q psy12421        162 FLYSGE  167 (168)
Q Consensus       162 ~~~~g~  167 (168)
                      .+.+|+
T Consensus       324 ~v~~G~  329 (524)
T 2ec8_A          324 FVNDGE  329 (524)
T ss_dssp             EECTTC
T ss_pred             EEcCCC
Confidence            455554

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.43  E-value=2.6e-14  Score=97.44  Aligned_cols=125  Identities=18%  Similarity=0.208  Sum_probs=80.5

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEE-eccCCCeeEEEe
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYK   93 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~   93 (168)
                      ..+.+.++...|.|.  |.|....... ...........+..+|.+........+..|+.+.|.|.+ .+.|.|.+.|++
T Consensus        68 ~~L~i~~~~~~d~G~--Y~C~~~~~~g-~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~  144 (209)
T 1nbq_A           68 TGITFKSVTREDTGT--YTCMVSEEGG-NSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK  144 (209)
T ss_dssp             TEEECSCCCTTSCSE--EEEEEEETTS-SCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEE
T ss_pred             cEEEEeeCCHHHCcE--EEEEEecCCC-CccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEE
Confidence            445667788888665  4333221110 111112222233455655444455678899999999996 899999999999


Q ss_pred             CCEECCCCCe--------EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         94 GNRELSKRDY--------SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        94 ~~~~~~~~~~--------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      ++..+.....        ..........|.|.++...|.|.|+|.|.|..|....+.
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~  201 (209)
T 1nbq_A          145 DGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSN  201 (209)
T ss_dssp             TTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECC
T ss_pred             CCeeCCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccc
Confidence            9987754211        011111222799999999999999999999999884433

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.43  E-value=1e-12  Score=87.64  Aligned_cols=79  Identities=13%  Similarity=0.186  Sum_probs=61.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc-eEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-DET  140 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~  140 (168)
                      ......+.+|+.+.|.|.+.+.+++ .+.|++++..+..     .....  .|.|.++..+|+|.|+|.|.|..|. ...
T Consensus        94 ~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~-----~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~  166 (175)
T 1fnl_A           94 QAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-----FHHNS--DFHIPKATLKDSGSYFCRGLVGSKNVSSE  166 (175)
T ss_dssp             ECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-----EEECC--CEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             eCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccC-----CCCCC--EEEEcccChhhCeEEEEEEEcCCCCccCc
Confidence            3345678899999999999987665 9999999987632     11233  6999999999999999999998665 444


Q ss_pred             EEEEEEee
Q psy12421        141 NCVVIVES  148 (168)
Q Consensus       141 ~~~l~v~~  148 (168)
                      .+.|.|.+
T Consensus       167 ~~~l~V~~  174 (175)
T 1fnl_A          167 TVNITITQ  174 (175)
T ss_dssp             CEEEEEEC
T ss_pred             cEEEEEeC
Confidence            66676654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.42  E-value=2.7e-13  Score=93.08  Aligned_cols=86  Identities=13%  Similarity=0.135  Sum_probs=67.3

Q ss_pred             CeEEecCCcEEEEEE---EeccCCCeeEEEeCCEECC------------------CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         66 PRVMQVRQTCKLLCC---LSGKPPPTVKWYKGNRELS------------------KRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~---~~g~p~p~i~W~~~~~~~~------------------~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +..+.+|+++.|.|.   +.+.|.|.+.|+|++....                  ...+.+....+...|.|.+++.+|+
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   81 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSANTFFLVVTAANISHD   81 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcCCEEEEEEccCCHHHC
Confidence            457889999999995   5678999999999764221                  0122333345566899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      |.|.|.|.|..|.....+.|.|..+|.
T Consensus        82 G~Y~C~a~n~~g~~~~~~~l~V~~p~~  108 (203)
T 4fa8_A           82 GNYLCRMKLGETEVTKQEHLSVVKPLT  108 (203)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEEEEE
T ss_pred             eEEEEEEEcCCCcEEEEEEEEecCCce
Confidence            999999999999999999998876543

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.42  E-value=1.5e-12  Score=93.92  Aligned_cols=88  Identities=23%  Similarity=0.456  Sum_probs=70.6

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +|.|..... ..+.+|+.+.|.|.+.|.|.| .+.|++++..+.. .++.+.  .+...|.|.++...|+|.|+|.|.|.
T Consensus       222 ~p~~~~~~~-~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~~~~~~~~~~~--~~~~~L~I~~v~~~d~G~Y~C~a~N~  298 (312)
T 2y23_A          222 GPHFVEYLS-WEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK--DGICTLLITEFSKKDAGIYEVILKDD  298 (312)
T ss_dssp             SSEEEEEEE-EEEETTTEEEEEEEEESCCSSCEEEEEETTEEEEEECCC------CEEEEEECSCSGGGCEEEEEEEEST
T ss_pred             CCceeecce-EEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEECCCCCcEEEE--CCEEEEEECcCCHHHCEEEEEEEEcC
Confidence            466664433 678899999999999999988 9999999998763 333322  44558999999999999999999999


Q ss_pred             CcceEEEEEEEEe
Q psy12421        135 HGTDETNCVVIVE  147 (168)
Q Consensus       135 ~g~~~~~~~l~v~  147 (168)
                      .|....++.|.+.
T Consensus       299 ~G~~~~~~~l~i~  311 (312)
T 2y23_A          299 RGKDKSRLKLVDE  311 (312)
T ss_dssp             TCCEEEEEEECSC
T ss_pred             CCceeeeeEEEec
Confidence            9999998888653

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.42  E-value=1.4e-12  Score=93.25  Aligned_cols=136  Identities=17%  Similarity=0.215  Sum_probs=86.7

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceec---cCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC-CeeE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRR---REPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVK   90 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~   90 (168)
                      ..+.+.++...|.+.  |.|.......   ...+.+.+.. ....+|.+...+....+.+|+.+.|.|.+.+.|. +.+.
T Consensus       144 ~~L~i~~~~~~d~G~--Y~C~a~n~~~~~~s~~~~l~V~~-~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~  220 (292)
T 4dkd_C          144 HGFTIHRAKFIQSQD--YQCSALMGGRKVMSISIRLKVQK-VIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVF  220 (292)
T ss_dssp             SCCEETTCCGGGCSE--EEEEECSTTSCEECCCEEEEEEC-CCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEE
T ss_pred             ceEEECCCCHHHCeE--EEEEEEeCCCceeEEEEEEEEeC-CCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEE
Confidence            346777778888665  4332221000   1112222211 1123888888888877789999999999998665 5678


Q ss_pred             EEeCCEECCCCCeEEEecC---CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCch
Q psy12421         91 WYKGNRELSKRDYSMSYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus        91 W~~~~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      |++++..+...........   ....|.|.++...|+|.|+|.|.|..|....++.|.|.......
T Consensus       221 w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~~~~  286 (292)
T 4dkd_C          221 LQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGNS  286 (292)
T ss_dssp             CCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC-------
T ss_pred             EeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCCCcc
Confidence            8888876643322111111   12379999999999999999999999999999999988765544

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.42  E-value=2.6e-13  Score=94.09  Aligned_cols=112  Identities=12%  Similarity=-0.008  Sum_probs=73.9

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEE--EEEEccCCCCCCeEEEEEE
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV--SMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ...+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+..............  .|.|.+++.+|+|.|+|.+
T Consensus         6 ~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   83 (218)
T 1uct_A            6 DFPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQY   83 (218)
T ss_dssp             GSCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEE
T ss_pred             CCCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCCCCcceeeEEEEcccccccCEEEEEEE
Confidence            345678876666 57889999999999877 7889999998764422111110111122  6999999999999999999


Q ss_pred             EeCCcceE--EEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        132 TNKHGTDE--TNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       132 ~n~~g~~~--~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      .|..|...  ..+.|.|.+.+..+.....+...+.+|+
T Consensus        84 ~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~  121 (218)
T 1uct_A           84 RIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGE  121 (218)
T ss_dssp             EETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTC
T ss_pred             EcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCC
Confidence            99876433  3456777653333322223345667775

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.41  E-value=5e-13  Score=97.76  Aligned_cols=111  Identities=17%  Similarity=0.159  Sum_probs=85.8

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEe-------ccCCCeeEEEeCCEEC--CCC-CeEEEecCCEEEEEEccCCCCCC
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLS-------GKPPPTVKWYKGNREL--SKR-DYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~-------g~p~p~i~W~~~~~~~--~~~-~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      ...|.|...+.+..+.+|+.+.|.|.+.       +.|.+.+.|++++..+  ... ...+...++  .|.|.+++..|+
T Consensus        16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~   93 (339)
T 3o4o_C           16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWAQDG--ALWLLPALQEDS   93 (339)
T ss_dssp             --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEEETT--EEEESSBCTTCC
T ss_pred             hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEeeCC--eEEECCCCcccC
Confidence            4568888889999999999999999998       8999999999998863  332 233434555  799999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      |.|+|.+.|..|.....+.|.|...+............+.+|+
T Consensus        94 G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~  136 (339)
T 3o4o_C           94 GTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLST  136 (339)
T ss_dssp             EEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTS
T ss_pred             EEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCC
Confidence            9999999999998888889999877655432222333555554

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.41  E-value=1.3e-13  Score=100.56  Aligned_cols=84  Identities=24%  Similarity=0.476  Sum_probs=67.6

Q ss_pred             eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++..+.....  ..........|.|.++...|+|.|+|.+.|..|.....+.|
T Consensus       133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l  212 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTL  212 (334)
T ss_dssp             EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEE
T ss_pred             EEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEE
Confidence            5688899999999999999999999999987754321  11112222379999999999999999999999998888888


Q ss_pred             EEeeCC
Q psy12421        145 IVESEE  150 (168)
Q Consensus       145 ~v~~~p  150 (168)
                      .|...+
T Consensus       213 ~V~~~~  218 (334)
T 1ry7_B          213 DVLERS  218 (334)
T ss_dssp             EEECCC
T ss_pred             EEecCC
Confidence            887643

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.41  E-value=6.8e-13  Score=91.42  Aligned_cols=133  Identities=15%  Similarity=0.198  Sum_probs=82.0

Q ss_pred             CCceeEEEEeCCCCCCCCCCccccee-ccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEE-eccCCCeeEEE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVR-RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWY   92 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~   92 (168)
                      ..+.+.+++..|.|.  |.|....-. ....+.+.+.  ....+|.+...+ ...+..|+.+.|.|.+ .+.|.|.+.|+
T Consensus        72 ~sL~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~l~V~--~~~~~p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~  146 (222)
T 4i0k_A           72 ASLRLQRVRVTDEGS--YTCFVSIQDFDSAAVSLQVA--APYSKPSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWK  146 (222)
T ss_dssp             CCEEECSCCGGGCSC--EEEEEEECCCCCCCCCCCCC--BCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEEEEE
T ss_pred             EEEEECCcccccCEE--EEEEEEeCCCceEEEEEEEE--cCCCCCcEEeCC-CceecCCceEEEEEecccccCCCeEEEE
Confidence            457788888888666  543332111 1111222221  112346665443 3467789999999999 78999999999


Q ss_pred             e-CCEECCCCCe-EE-EecCC-EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421         93 K-GNRELSKRDY-SM-SYSDG-VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus        93 ~-~~~~~~~~~~-~~-~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      + ++..+..... .. ....+ ...|.|.++...|.|.|+|.|.|..|.....+.|.|.++|..
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  210 (222)
T 4i0k_A          147 DGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLVRNPVLQQDAHGSVTITGQPLT  210 (222)
T ss_dssp             CTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCC----
T ss_pred             cCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEEECCCCCCceEEEEEEeCCccc
Confidence            9 4544433111 11 11222 235788999999999999999999999999999999877644

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.41  E-value=2.1e-13  Score=100.14  Aligned_cols=81  Identities=17%  Similarity=0.330  Sum_probs=63.5

Q ss_pred             CeEEecCCcEEEEEEE-----eccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC-cce-
Q psy12421         66 PRVMQVRQTCKLLCCL-----SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH-GTD-  138 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~-----~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~-g~~-  138 (168)
                      ...+.+|+.+.|.|.+     .|.|.|.+.|++++..+.... .+...+.  .|.|.++..+|+|.|+|.|.|.. |.. 
T Consensus       129 ~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~-~~~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~~g~~~  205 (349)
T 4dep_C          129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFN-NVIPEGM--NLSFLIALISNNGNYTCVVTYPENGRTF  205 (349)
T ss_dssp             EEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCS-SEEEETT--EEEEESCCGGGCEEEEEEEEEEETTEEE
T ss_pred             ceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCcc-ceeecCC--EEEEeeeeecCCcEEEEEEEEeeCCEEE
Confidence            4567889999999985     788999999999999886532 2333344  79999999999999999999987 544 


Q ss_pred             --EEEEEEEEeeC
Q psy12421        139 --ETNCVVIVESE  149 (168)
Q Consensus       139 --~~~~~l~v~~~  149 (168)
                        ...+.|.|...
T Consensus       206 ~~~~~~~l~v~~~  218 (349)
T 4dep_C          206 HLTRTLTVKVVGS  218 (349)
T ss_dssp             EEEEEEEEEEECC
T ss_pred             EEEEEEEEEEEcc
Confidence              45666766653

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.41  E-value=1.6e-12  Score=88.30  Aligned_cols=118  Identities=11%  Similarity=0.045  Sum_probs=71.4

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccce-----eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCe
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQV-----RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT   88 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~   88 (168)
                      ...+.+.++...|.|.  |.|.....     .....+.+.+.  ....+|.+...+ ...+.+|+.+.|.|.+.+. .+.
T Consensus        57 ~~~L~i~~v~~~D~G~--Y~C~a~n~~~g~~~~s~~~~l~V~--~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~-~~~  130 (198)
T 1ugn_A           57 KGQFPIPSITWEHTGR--YRCYYGSDTAGRSESSDPLELVVT--GAYIKPTLSAQP-SPVVNSGGNVTLQCDSQVA-FDG  130 (198)
T ss_dssp             TTEEEESSCCGGGCEE--EEEEEEETTTEECCCCCCEEEEEE--CSSCCCEEEEES-CSEEETTCCEEEEEECSSC-CSE
T ss_pred             ccEEEECCCCHHHCeE--EEEEEECCCCCcccCCccEEEEEc--ccccCCccccCC-ccccCCCCcEEEEEecCCC-CcE
Confidence            3456677888888666  43332211     11112222222  112245655443 4678899999999999888 789


Q ss_pred             eEEEeCCEECCCCCeE--EEe-cCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         89 VKWYKGNRELSKRDYS--MSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        89 i~W~~~~~~~~~~~~~--~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      +.|+|++..+......  ... ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus       131 v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~  182 (198)
T 1ugn_A          131 FILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSP  182 (198)
T ss_dssp             EEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTST
T ss_pred             EEEEECCCccCCccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCC
Confidence            9999999876432211  111 112347999999999999999999998763

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.40  E-value=2.9e-12  Score=87.96  Aligned_cols=94  Identities=26%  Similarity=0.493  Sum_probs=73.0

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEE--EEEEccCCCCCCeEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVV--SMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~--~l~i~~~~~~d~G~Y~C  129 (168)
                      ..+|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+...   .......++..  .|.|.+++..|+|.|+|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSSEEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccceeEEecCCceEEEEEeccCCcccCceEEE
Confidence            46889998888999999999999999999999999999999988653   22333333321  13577889999999999


Q ss_pred             EEEeCCcceE-EEEEEEEee
Q psy12421        130 VATNKHGTDE-TNCVVIVES  148 (168)
Q Consensus       130 ~a~n~~g~~~-~~~~l~v~~  148 (168)
                      .+.|..|... ....|.|..
T Consensus        87 ~~~n~~g~~~~~~~~l~v~~  106 (217)
T 2vr9_A           87 VAKNRVGQAVSRHASLQIAV  106 (217)
T ss_dssp             EEEETTEEEECCCEEEEECE
T ss_pred             EEecCCCccccccceEEEEE
Confidence            9999988753 355666654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.40  E-value=1.1e-12  Score=99.67  Aligned_cols=96  Identities=18%  Similarity=0.284  Sum_probs=73.2

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-ECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-ELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +.+|.+...+.+..+.+|+++.|.|.+ +.|.|.+.|++++. .+...   .......++  +|.|.+++.+|+|.|+|.
T Consensus       339 C~~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~  415 (440)
T 3zyj_A          339 CYAPVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG--TLNFTNVTVQDTGMYTCM  415 (440)
T ss_dssp             CCCCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTC--CEEESSCCSTTCEEEEEE
T ss_pred             CCCCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCC--eEEEccCChhhCEEEEEE
Confidence            457888888888999999999999999 67999999998543 32221   112233344  699999999999999999


Q ss_pred             EEeCCcceEEEEEEEEeeCCCch
Q psy12421        131 ATNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       131 a~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      |.|..|....++.+.|.+.+.++
T Consensus       416 a~N~~G~~~~~~~~~v~~~~~~~  438 (440)
T 3zyj_A          416 VSNSVGNTTASATLNVTGTHHHH  438 (440)
T ss_dssp             EECSSCEEEEEEEEEEC------
T ss_pred             EEcCCCcEEEEEEEEEecccccc
Confidence            99999999999999998876654

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.40  E-value=1.1e-12  Score=90.31  Aligned_cols=130  Identities=12%  Similarity=0.080  Sum_probs=76.5

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC-
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG-   94 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~-   94 (168)
                      .|.+.+++..|.|.  |.|...   + ...........+..+|..........+..|+.+.|.|.+.|.|.|.+.|+++ 
T Consensus        81 ~L~I~~v~~~D~G~--Y~C~~~---~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~  154 (222)
T 3sbw_C           81 ALQITDVKLQDAGV--YRCMIS---Y-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSD  154 (222)
T ss_dssp             EEEESSCCGGGCEE--EEEEEE---S-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEETT
T ss_pred             EEEEcCcccccCeE--EEEEEE---e-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEECC
Confidence            46777888888666  433322   2 1111111112222222211111112567899999999999999999999998 


Q ss_pred             CEECCCCCeE-EEe-cCC-EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         95 NRELSKRDYS-MSY-SDG-VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        95 ~~~~~~~~~~-~~~-~~~-~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      +..+...... ... .++ ........+...|.|.|+|.|.|..|.......|.|.+.|.
T Consensus       155 g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~~g~~~~~~~l~v~~~p~  214 (222)
T 3sbw_C          155 HQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVIPELPL  214 (222)
T ss_dssp             CCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEETTTTEEEEEEEECCCC--
T ss_pred             CceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeCccceeeEEEEEecCCcc
Confidence            5544432111 111 111 11222234457899999999999999999999998876553

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.40  E-value=2.2e-12  Score=93.69  Aligned_cols=148  Identities=11%  Similarity=0.050  Sum_probs=91.1

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccc-------eeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQ-------VRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP   86 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~   86 (168)
                      ...+.+.++...|.|.  |.|....       ......+.+.+.  ....+|.+...+... +.+|+.+.|.|.+. .+.
T Consensus        73 ~~~L~I~~v~~~D~G~--Y~C~a~~~~~~~~~~~~s~~~~l~V~--~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~-~~~  146 (316)
T 3vh8_G           73 QESFNMSPVTTAHAGN--YTCRGSHPHSPTGWSAPSNPVVIMVT--GNHRKPSLLAHPGPL-VKSGERVILQCWSD-IMF  146 (316)
T ss_dssp             SSCEEECSCCGGGCEE--EEEEEBCSSSSSSBCCCCCCEEEEEE--CSSCCCEEEEESCSE-EETTCCEEEEEEES-SCC
T ss_pred             eEEEEECCCCcccCeE--EEEEEEcCCCCcceecCCCcEEEEEe--cCCCCCeEEecCCCc-cCCCCeEEEEEcCC-CCC
Confidence            4456677888888666  4332111       011122222221  223456776555544 88999999999984 567


Q ss_pred             CeeEEEeCCEECCCCCeE--EEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-----EEEEEEEEeeCCCchhhhhhh
Q psy12421         87 PTVKWYKGNRELSKRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-----ETNCVVIVESEEESKEQQELA  159 (168)
Q Consensus        87 p~i~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~p~~~~~~~~~  159 (168)
                      +.+.|++++..+......  .........|.|.++...|+|.|+|.|.|..|..     .....|.|...+..+.....+
T Consensus       147 ~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~  226 (316)
T 3vh8_G          147 EHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQP  226 (316)
T ss_dssp             SEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEES
T ss_pred             cEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCC
Confidence            789999998766432111  1111123379999999999999999999998742     445567776544444333334


Q ss_pred             hhcccCCC
Q psy12421        160 HNFLYSGE  167 (168)
Q Consensus       160 ~~~~~~g~  167 (168)
                      ...+.+|+
T Consensus       227 ~~~v~~G~  234 (316)
T 3vh8_G          227 GPKVQAGE  234 (316)
T ss_dssp             CSCCCTTS
T ss_pred             CCeecCCC
Confidence            44667775

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.39  E-value=4.6e-13  Score=99.68  Aligned_cols=93  Identities=16%  Similarity=0.304  Sum_probs=73.1

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEec-cCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +..+|.|...+.+..+.+|+.+.|.|.+.+ .|.+.+.|++++..+....  +.....++  +|.|.++...|+|.|+|.
T Consensus         3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~--~L~i~~~~~~D~G~Y~C~   80 (395)
T 1bih_A            3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--SLVFLRPQASDEGHYQCF   80 (395)
T ss_dssp             --CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSC--CEEESSCCGGGCEEEEEE
T ss_pred             cCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEEecCCc--eEEEecCCCCCCcEEEEE
Confidence            467899998888899999999999999998 8999999999998876532  22222333  799999999999999999


Q ss_pred             EEeCCcceE-EEEEEEEee
Q psy12421        131 ATNKHGTDE-TNCVVIVES  148 (168)
Q Consensus       131 a~n~~g~~~-~~~~l~v~~  148 (168)
                      +.|..|... ..+.|.+..
T Consensus        81 a~n~~g~~~s~~~~l~v~~   99 (395)
T 1bih_A           81 AETPAGVASSRVISFRKTY   99 (395)
T ss_dssp             EEETTEEEECCCEEEEEEE
T ss_pred             EEeCCCeEEeEEEEEEEEE
Confidence            999988754 234555443

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.39  E-value=1.6e-12  Score=91.46  Aligned_cols=101  Identities=17%  Similarity=0.250  Sum_probs=75.4

Q ss_pred             EEeecCCeEEecCCcEEEEEEE-eccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      +...+....+.+|+.+.|.|.+ .+.|.+.+.|++++..+...     ....  .|.|.++...|.|.|.|.+.|..+..
T Consensus        85 ~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~-----~~~~--~l~i~~~~~~d~G~Y~C~~~n~~~~~  157 (262)
T 3rjd_A           85 LLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF-----HWNS--NLTILKTNISHNGTYHCSGMGKHRYT  157 (262)
T ss_dssp             EEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----EECC--CEEESSCCGGGCEEEEEEEESSSEEE
T ss_pred             eEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc-----CCCC--eEEEEECChhhCEEEEEEEeCCCCcc
Confidence            3345556778899999999999 67888999999998876421     1223  68999999999999999999999888


Q ss_pred             EEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        139 ETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       139 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      ...+.|.|...+..+.....+...+.+|+
T Consensus       158 ~~~~~l~V~~~~~~p~~~~~~~~~~~~g~  186 (262)
T 3rjd_A          158 SAGISVTVKELFPAPVLNASVTSPLLEGN  186 (262)
T ss_dssp             EECEEEEEECSSCCCEEEESSCSSEETTC
T ss_pred             ccceEEEeccCCCCCeEeecCceeecCCC
Confidence            88888888865433333333344455664

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.39  E-value=1.1e-12  Score=88.66  Aligned_cols=109  Identities=11%  Similarity=0.005  Sum_probs=73.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      +|.|...+.. .+.+|++++|.|.+.+ +.+.+.|+|++..+...............|.|.+++..|+|.|+|.+.|..|
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~   81 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECCCcccccccccCCCcceeEEEeCcCCcccCeEEEEEecCCCC
Confidence            5777777766 7889999999999875 4578999999876531100000122334799999999999999999998765


Q ss_pred             ce--EEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        137 TD--ETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       137 ~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      ..  ...+.|.|.+....+.....+...+.+|+
T Consensus        82 ~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~  114 (188)
T 1oll_A           82 WSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE  114 (188)
T ss_dssp             ECCCCCCEEEEEESCSCCCEEEEESCSEEETTC
T ss_pred             CCCCCCceEEEecccCCCCeEEECCCCccccCC
Confidence            43  34566777653322222233444566665

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.39  E-value=1.4e-12  Score=105.56  Aligned_cols=128  Identities=16%  Similarity=0.222  Sum_probs=91.1

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR   96 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~   96 (168)
                      +.+.++...|.+.  |   .+.+.+............+..+|.|...+.+..+..|+.+.|.|.+.|.|.|.+.|++++.
T Consensus       679 L~i~~v~~~d~G~--Y---~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~k~~~  753 (816)
T 3dmk_A          679 LTIEAVEASHAGN--F---TCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVG  753 (816)
T ss_dssp             EEEESCCGGGCEE--E---EEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEECCEECS
T ss_pred             EEEccCChhhCEE--E---EEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeEEEEecCC
Confidence            4455555566444  3   3334444333333334456678999888888899999999999999999999999999875


Q ss_pred             ECCCCC------eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         97 ELSKRD------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        97 ~~~~~~------~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      .+....      ......++  .|.|.++...|+|.|+|.|.|..|....++.+..+..+.
T Consensus       754 ~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~~~~~~~  812 (816)
T 3dmk_A          754 DTPGEYKDLKKSDNIRVEEG--TLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH  812 (816)
T ss_dssp             SSTTCCBCCCCBTTEEEETT--EEEECSCCGGGCEEEEEEEECSSSSCEEEEEEEEEEC--
T ss_pred             CCCccccccccCCCEEecCC--EEEECcCChhhCeEEEEEEEeCCCCCcEEEEEEEeeccc
Confidence            432211      01222444  799999999999999999999999999888777665543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.39  E-value=3.5e-12  Score=99.67  Aligned_cols=127  Identities=17%  Similarity=0.143  Sum_probs=84.9

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeeccc-CCCeEEeecCCeEEecCCcEEEEEEEe----ccCCCeeEE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVE-SAPNFTFLLRPRVMQVRQTCKLLCCLS----GKPPPTVKW   91 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~----g~p~p~i~W   91 (168)
                      |.+.++...|.|.  |.|.   . +............+. .+|.+. .+....+.+|+.+.|.|.+.    +.|.|.+.|
T Consensus       408 L~I~~v~~~D~G~--Y~C~---a-n~~g~~~~~~~l~V~~~~p~~~-~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W  480 (585)
T 2ocw_A          408 VILNQLTSRDAGF--YWCL---T-NGDTLWRTTVEIKIIEGEPNLK-VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKW  480 (585)
T ss_pred             EEECCCChhhCEE--EEEc---c-cCCCccceeEEEEEecCccccc-cCCceeEecCCcEEEEEEecCCCCCCccEEEEE
Confidence            5566777788665  4332   2 111111111122222 345544 36677899999999999986    778899999


Q ss_pred             EeCCEECCCCC-------eEEEe-cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE-EEEEEEeeCC
Q psy12421         92 YKGNRELSKRD-------YSMSY-SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESEE  150 (168)
Q Consensus        92 ~~~~~~~~~~~-------~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p  150 (168)
                      ++++..+....       +.... .+....|.|.++..+|+|.|+|.|.|..|.... .+.|.|..+|
T Consensus       481 ~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~~~p  548 (585)
T 2ocw_A          481 NNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK  548 (585)
T ss_pred             eecCceeeeccCCCCCcceEEecCcccEEEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEEeee
Confidence            99998764321       11111 223358999999999999999999999987654 4889998776

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.39  E-value=1.2e-13  Score=93.99  Aligned_cols=108  Identities=15%  Similarity=0.178  Sum_probs=74.8

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+. ..+.+|+++.|.|.+.+.|. .+.|+|++..+..  .........+  .|.|.++...|+|.|+|.+.|
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~G~Y~C~a~n   79 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQELVKKG--QFPIPSITWEHTGRYRCYYGS   79 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCHHHHTTT--EEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccccCCccc--EEEECCCCHHHCeEEEEEEEC
Confidence            4677776665 47889999999999988775 6999999876631  1100111233  799999999999999999999


Q ss_pred             CC-c--ceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        134 KH-G--TDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       134 ~~-g--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      .. |  .....+.|.|...+..+.....+...+.+|+
T Consensus        80 ~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~  116 (198)
T 1ugn_A           80 DTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGG  116 (198)
T ss_dssp             TTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTC
T ss_pred             CCCCcccCCccEEEEEcccccCCccccCCccccCCCC
Confidence            87 6  3345677777764333332223334666775

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.38  E-value=2e-12  Score=85.51  Aligned_cols=117  Identities=18%  Similarity=0.199  Sum_probs=76.5

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEe-ccCCCeeEEEe
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYK   93 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~   93 (168)
                      ..+++.++...|.|.  |.|..........+.+.+     ..+|.+. ......+.+|+.+.|.|.+. +.|.+.+.|++
T Consensus        51 ~~~~~~~~~~~d~G~--Y~C~~~~~~~s~~~~l~v-----~~~~~~~-~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~  122 (170)
T 3ry4_A           51 QPSYRFKANNNDSGE--YTCQTGQTSLSDPVHLTV-----LFEWLVL-QTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQ  122 (170)
T ss_dssp             SSEEEEECCGGGCEE--EEEEETTSBCCCCEEEEE-----ECCSEEE-ECSCSEECTTCCEEEEEEEGGGCCEEEEEEEE
T ss_pred             cceEEEecccccCeE--EEEEEeCCCceEeEEEEE-----ECCceEe-cCCCceeecCCeEEEEEECCCCCCCceEEEEE
Confidence            345667777777665  433332211122222222     2344433 34456788999999999995 55678999999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc-eEEEEEEEE
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-DETNCVVIV  146 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~v  146 (168)
                      ++..+..     .....  .|.|.++...|+|.|+|.|.|..|. ....+.|.|
T Consensus       123 ~g~~~~~-----~~~~~--~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  169 (170)
T 3ry4_A          123 NGKSQKF-----SHLDP--TFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITV  169 (170)
T ss_dssp             TTEEEEE-----ESSCC--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCeEccc-----cCCCC--eEEEEeccccCCEEEEEEEEeCcCccccccEEEEE
Confidence            9886542     11223  7999999999999999999999986 343455544

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.38  E-value=1.2e-12  Score=88.87  Aligned_cols=116  Identities=14%  Similarity=0.165  Sum_probs=73.7

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccce----eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQV----RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVK   90 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~   90 (168)
                      ..+.+.++...|.|.  |.|.....    .....+.+.+.  ....+|.+...+.. .+.+|+.++|.|.+.+ +.+.+.
T Consensus        58 ~~L~i~~v~~~D~G~--Y~C~a~n~~g~~~~s~~~~l~V~--~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~-~~~~~~  131 (196)
T 3p2t_A           58 ARFSIPSMTEDYAGR--YRCYYRSPVGWSQPSDPLELVMT--GAYSKPTLSALPSP-LVTSGKSVTLLCQSRS-PMDTFL  131 (196)
T ss_dssp             EEEEESSCCGGGCEE--EEEEEEETTEEBCCCCCEEEEEE--CSSCCCEEEEESCS-EECTTCCEEEEEEEEE-EEEEEE
T ss_pred             EEEEeccCCcccCce--EEEEEeCCCcccCCCccEEEEec--CCCCCCEEEeCCcc-eecCCCeEEEEEecCC-CCCEEE
Confidence            445666777788666  43322111    11112222221  22345666655543 7789999999999988 456899


Q ss_pred             EEeCCEECCCCCeEE--EecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         91 WYKGNRELSKRDYSM--SYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        91 W~~~~~~~~~~~~~~--~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      |+|++..+.......  ........|.|.++..+|+|.|+|.|.|..+
T Consensus       132 w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~  179 (196)
T 3p2t_A          132 LCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYRCFSSHGFS  179 (196)
T ss_dssp             EEETTCCCGGGSEEEEEEEEEEEEEEEECSCCGGGCEEEEEEEECGGG
T ss_pred             EEeCCCcccceeecccccccCcceEEEeCCCcccCCCeEEEEEEcCCC
Confidence            999997664332111  1112233799999999999999999999876

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.38  E-value=5.2e-12  Score=87.93  Aligned_cols=92  Identities=25%  Similarity=0.465  Sum_probs=72.4

Q ss_pred             CCCeEEee----cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC----eEEEecCCEEEEEEccCCCCCCeEE
Q psy12421         56 SAPNFTFL----LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD----YSMSYSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        56 ~~p~~~~~----~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~----~~~~~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      .+|.|...    +....+.+|+++.|.|.+.|.|.+.+.|++++..+....    ........  .|.|.++...|+|.|
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y   87 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQW--SLVMESVVPSDRGNY   87 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEEEGGGT--EEEECSCCGGGCEEE
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceeeeccce--EEEEEeCCcccCEEE
Confidence            35666533    235788899999999999999999999999999875421    12222333  799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEeeC
Q psy12421        128 KCVATNKHGTDETNCVVIVESE  149 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l~v~~~  149 (168)
                      +|.+.|..|.......|.|...
T Consensus        88 ~C~~~~~~~~~~~~~~l~V~~~  109 (241)
T 3grw_A           88 TCVVENKFGSIRQTYTLDVLER  109 (241)
T ss_dssp             EEEEEETTEEEEEEEEEEEECC
T ss_pred             EEEEeecCCceEEEEEEEEecc
Confidence            9999999999888888888764

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.37  E-value=9.1e-13  Score=89.89  Aligned_cols=127  Identities=11%  Similarity=0.041  Sum_probs=79.9

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecc-cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETV-ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG   94 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~   94 (168)
                      .|.+.+++..|.+.  |.+......  ...........+ ..++..........+..|..+.+.|.+.|.|.|.+.|+++
T Consensus        80 sL~I~~v~~~D~G~--Y~C~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~  155 (218)
T 4frw_A           80 SVLLRNAVQADEGE--YECRVSTFP--AGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTE  155 (218)
T ss_dssp             CEEESSCCGGGCEE--EEEEEEEET--TEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEES
T ss_pred             EEEEeeccHHHCCc--eeEEEEecc--CceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEEEC
Confidence            46677888888665  432221111  111111111111 2223333444556677789999999999999999999999


Q ss_pred             CEECCCCCeEEEecC---CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         95 NRELSKRDYSMSYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        95 ~~~~~~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      +..+...... ....   ..+.|.|..+...|.|.|+|.|.|..|.......+.|.
T Consensus       156 ~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v~  210 (218)
T 4frw_A          156 VKGTTSSRSF-KHSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHILH  210 (218)
T ss_dssp             SCCEEEEEEE-ECSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECC
T ss_pred             CcccccCceE-ecCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEEE
Confidence            8755432111 1111   12369999999999999999999999987766666553

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.37  E-value=6.2e-13  Score=92.14  Aligned_cols=89  Identities=10%  Similarity=0.121  Sum_probs=59.0

Q ss_pred             CeEEecCCcEEEEEEEec-cCCCeeEEEeCCE-ECCCCC-eEEEecCC-EEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNR-ELSKRD-YSMSYSDG-VVSMEIIDCKPEDSGEYKCVATNKHGTDETN  141 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~-~~~~~~-~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  141 (168)
                      ...+..|..+.|.|.+.| .|.|.+.|++++. .+.... ......++ ...+.+..++.+|+|.|+|.|.|..|.....
T Consensus       127 ~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~~~~  206 (226)
T 4f80_A          127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKT  206 (226)
T ss_dssp             EEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTEEEE
T ss_pred             eeeeccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCeEEE
Confidence            456778999999999988 5999999999654 333321 12222233 2234455678899999999999999999999


Q ss_pred             EEEEEeeCCCchh
Q psy12421        142 CVVIVESEEESKE  154 (168)
Q Consensus       142 ~~l~v~~~p~~~~  154 (168)
                      +.|.|.++-.+..
T Consensus       207 ~~v~v~ep~~~s~  219 (226)
T 4f80_A          207 ASISIADPFFRSA  219 (226)
T ss_dssp             EEECCCTTTC---
T ss_pred             EEEEECCCCCCcc
Confidence            9998876543333

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.37  E-value=7.6e-13  Score=89.87  Aligned_cols=117  Identities=9%  Similarity=0.024  Sum_probs=64.4

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccce----eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQV----RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVK   90 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~   90 (168)
                      ..+.+.++...|.|.  |.|.....    .....+.+.+.  ....+|.+...+ ...+.+|+++.|.|.+.+.| +.+.
T Consensus        58 ~~L~i~~v~~~D~G~--Y~C~a~n~~g~~~~s~~~~l~V~--~~~~~p~i~~~~-~~~v~~G~~v~L~C~~~~~p-~~~~  131 (196)
T 2d3v_A           58 ARFSIPSMTEHHAGR--YRCYYYSPAGWSEPSDPLELVVT--GFYNKPTLSALP-SPVVTSGENVTLQCGSRLRF-DRFI  131 (196)
T ss_dssp             EEEEESSCCGGGCEE--EEEEEEETTEECBCCCCEEEEEE--CSSCCCEEEC------------CEEEEEESSCC-SEEE
T ss_pred             cEEEeccCChhHCeE--EEEEEeCCCCcCCcCccEEEEec--CCCCCCeEEccC-CccccCCCcEEEEEEcCCCC-CEEE
Confidence            446677788888666  43332110    01112223322  212356665443 35788999999999999988 9999


Q ss_pred             EEeCCEECCCCCeE-EEecC--CEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         91 WYKGNRELSKRDYS-MSYSD--GVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        91 W~~~~~~~~~~~~~-~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      |+|++..+...... .....  ....|.|.+++.+|+|.|+|.|.|..+.
T Consensus       132 W~k~g~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  181 (196)
T 2d3v_A          132 LTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHIL  181 (196)
T ss_dssp             EEEC---CCEEEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTEE
T ss_pred             EEccCCcccccccccccccCCCceeEEEeeecCcccCeeEEEEEEccCCC
Confidence            99999876432111 11111  1247999999999999999999998653

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.37  E-value=3.4e-12  Score=88.01  Aligned_cols=88  Identities=19%  Similarity=0.304  Sum_probs=72.2

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ...+.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+....      ..  .|.|.++...|+|.|.|.+.|.
T Consensus        16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~------~~--~L~i~~v~~~d~G~Y~C~~~n~   87 (218)
T 3k0w_A           16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGN------TS--ELIFNAVHVKDAGFYVCRVNNN   87 (218)
T ss_dssp             ---CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCC------SS--EEEETTCCGGGCEEEEEEEECT
T ss_pred             CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCC------CC--EEEEccCChhhCeEeEEEEEcC
Confidence            456888889999999999999999999999999999999998876532      22  7999999999999999999999


Q ss_pred             Ccce-EEEEEEEEeeCC
Q psy12421        135 HGTD-ETNCVVIVESEE  150 (168)
Q Consensus       135 ~g~~-~~~~~l~v~~~p  150 (168)
                      .|.. .....|.|...+
T Consensus        88 ~~~~~s~~~~l~V~~~~  104 (218)
T 3k0w_A           88 FTFEFSQWSQLDVCDIP  104 (218)
T ss_dssp             TCCEECCCEEEEEECCC
T ss_pred             CCCceeeEEEEEEEccC
Confidence            8764 445677776553

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.37  E-value=1.1e-11  Score=88.63  Aligned_cols=95  Identities=20%  Similarity=0.382  Sum_probs=76.1

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe-CCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK-GNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.+...+.+..+.+|+.+.|.|.+.|.|. .+.|++ ++..+.. .++.+...+....|.|.++...|+|.|+|.+.|
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n   81 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQATD   81 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEec
Confidence            4788888898999999999999999999774 899999 6665544 344444455566899999999999999999999


Q ss_pred             CCcce-EEEEEEEEeeCCC
Q psy12421        134 KHGTD-ETNCVVIVESEEE  151 (168)
Q Consensus       134 ~~g~~-~~~~~l~v~~~p~  151 (168)
                      ..|.. .....|.|..++.
T Consensus        82 ~~g~~~~~~~~l~v~~~~~  100 (291)
T 2wim_A           82 AKGQTQEATVVLEIYQKLT  100 (291)
T ss_dssp             SSSCEEEEEEEEEEECCCB
T ss_pred             ccCceEEEEEEEEecCCcc
Confidence            98876 4466777766554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.37  E-value=2.6e-13  Score=99.24  Aligned_cols=84  Identities=21%  Similarity=0.396  Sum_probs=65.4

Q ss_pred             eEEecCCcEEEEEE-----EeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc----
Q psy12421         67 RVMQVRQTCKLLCC-----LSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT----  137 (168)
Q Consensus        67 ~~~~~g~~~~l~C~-----~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~----  137 (168)
                      ..+.+|+.+.|.|.     +.|.|.+.+.|++++..+...........+...|.|.++...|+|.|+|.|.|..|.    
T Consensus       130 ~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~  209 (339)
T 3o4o_C          130 QILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYN  209 (339)
T ss_dssp             EEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCE
T ss_pred             eEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEE
Confidence            46789999999999     789999999999999887654222222222227999999999999999999999874    


Q ss_pred             eEEEEEEEEeeCC
Q psy12421        138 DETNCVVIVESEE  150 (168)
Q Consensus       138 ~~~~~~l~v~~~p  150 (168)
                      ....+.|.|...+
T Consensus       210 ~~~~~~l~V~~~~  222 (339)
T 3o4o_C          210 ITRSIELRIKKKK  222 (339)
T ss_dssp             EEEEEEEEEECCC
T ss_pred             EEEEEEEEEEcCC
Confidence            4566777776543

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.37  E-value=9.4e-12  Score=84.60  Aligned_cols=91  Identities=15%  Similarity=0.141  Sum_probs=67.2

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC-----CeeEEEeCCEEC-CC-CCeEEEec---CCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP-----PTVKWYKGNREL-SK-RDYSMSYS---DGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~-----p~i~W~~~~~~~-~~-~~~~~~~~---~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .+....+.+|+.+.|.|.+.+.|.     +.+.|++.+... .. .+..+...   .+...|.|.+++.+|+|.|.|.+.
T Consensus         8 p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~   87 (202)
T 3bp6_B            8 PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVI   87 (202)
T ss_dssp             SCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEE
Confidence            334567889999999999999886     899999944333 22 22222221   144589999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeCCCch
Q psy12421        133 NKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      |..|.....+.|.|..++..+
T Consensus        88 ~~~~~~~~~~~l~V~~~~~~p  108 (202)
T 3bp6_B           88 CGAAWDYKYLTVKVKASYMRI  108 (202)
T ss_dssp             ETTEEEEEEEEEEEEBCCCCE
T ss_pred             eCCCcceEEEEEEecCCCCcc
Confidence            999988888888888765433

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.37  E-value=2.4e-12  Score=87.73  Aligned_cols=93  Identities=18%  Similarity=0.293  Sum_probs=71.2

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEEC------------C-CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL------------S-KRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~------------~-~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            . ..+...  ...  .|.|.+++..|+
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~--~L~i~~v~~~D~   77 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTF--SSS--GITFSSVTRKDN   77 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEE--ETT--EEEESCCCGGGC
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEe--ece--eEEEcccCcccC
Confidence            44556667788999999999999999999999999976542            1 122222  233  799999999999


Q ss_pred             eEEEEEEEeCCc--ceEEEEEEEEeeCCCchh
Q psy12421        125 GEYKCVATNKHG--TDETNCVVIVESEEESKE  154 (168)
Q Consensus       125 G~Y~C~a~n~~g--~~~~~~~l~v~~~p~~~~  154 (168)
                      |.|+|.+.|..|  .....+.|.|..+|..+.
T Consensus        78 G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~  109 (212)
T 1f97_A           78 GEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPT  109 (212)
T ss_dssp             EEEEEEEEETTSSSEEEEEEEEEEEBCCCCCE
T ss_pred             eEEEEEEEccCCCcccEEEEEEEEEcCCCCcc
Confidence            999999999977  456677888887766544

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.36  E-value=4.4e-12  Score=81.36  Aligned_cols=92  Identities=16%  Similarity=0.262  Sum_probs=66.1

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CE---EC--CCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NR---EL--SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~---~~--~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ..+...+....+.+|+++.|.|.+.+.  +.+.||++  +.   .+  ...++.+...+....|.|.+++.+|+|.|.|.
T Consensus        18 ~~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~~~~~~~L~I~~~~~~DsG~Y~C~   95 (133)
T 3khq_A           18 SQIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQNGSVYTLTIQNIQYEDNGIYFCK   95 (133)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEEETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEcCCCEEEEEECCCChHHCEEEEEE
Confidence            356667778889999999999999886  88999987  22   12  23455555555667899999999999999999


Q ss_pred             EEeCCcc----eEEEEEEEEeeCCC
Q psy12421        131 ATNKHGT----DETNCVVIVESEEE  151 (168)
Q Consensus       131 a~n~~g~----~~~~~~l~v~~~p~  151 (168)
                      +.|..|.    ......|.|...|.
T Consensus        96 a~n~~g~~~~~~g~gt~L~V~~~p~  120 (133)
T 3khq_A           96 QKCDSANHNVTDSCGTELLVLGFST  120 (133)
T ss_dssp             ESSCC-------CCCEEEEEC----
T ss_pred             EEeCCCCcceeECCCEEEEEEeccc
Confidence            9998763    23345677776443

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.36  E-value=8.7e-13  Score=90.31  Aligned_cols=86  Identities=8%  Similarity=0.134  Sum_probs=60.4

Q ss_pred             eEEecCCcEEEEEEEeccCC---CeeEEEeCCEECCCCCeEEE-----ecCCEEEEEEccCCCCCCeEEEEEEEeCCcc-
Q psy12421         67 RVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRELSKRDYSMS-----YSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-  137 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~---p~i~W~~~~~~~~~~~~~~~-----~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-  137 (168)
                      ..+.+|+.+.|.|.+.|.++   +.+.|++++..+........     .......|.|......|.|.|+|.|.|..|. 
T Consensus       101 ~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k~~~~l~~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~  180 (202)
T 1vca_A          101 GPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM  180 (202)
T ss_dssp             SCEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred             eEEcCCCCEEEEEEECCcCCCCCeEEEEEeCCeECcccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCC
Confidence            56889999999999988643   37899999987643110000     0111234678888888899999999998876 


Q ss_pred             ------eEEEEEEEEeeCCCc
Q psy12421        138 ------DETNCVVIVESEEES  152 (168)
Q Consensus       138 ------~~~~~~l~v~~~p~~  152 (168)
                            ...+..|.|.++|..
T Consensus       181 ~~~~~~~~~~~~L~V~y~P~~  201 (202)
T 1vca_A          181 DSVPTVRQAVKELQVYISPKN  201 (202)
T ss_dssp             TTSCSEEEEEEECCEECCC--
T ss_pred             CCcceeEeeEEEEEEecCCCC
Confidence                  355778888888754

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.35  E-value=3.9e-12  Score=89.15  Aligned_cols=91  Identities=19%  Similarity=0.221  Sum_probs=65.5

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe--CCEECC-------------CCCeEEEecCCEEEEEEccCCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK--GNRELS-------------KRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~--~~~~~~-------------~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      ++.+...+....+.+|+++.|.|.+.+.|.+.+.|++  ++..+.             ..++.........+|.|.++..
T Consensus       135 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  214 (247)
T 2ghw_B          135 ETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGSGSGTDFTLTISRLEP  214 (247)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEECSSSEEEEEECSCCG
T ss_pred             ceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEecCCCeEEEEECcCCH
Confidence            4556666767789999999999999999999999999  444321             1233333344455799999999


Q ss_pred             CCCeEEEEEEEeCCcceE-EEEEEEEe
Q psy12421        122 EDSGEYKCVATNKHGTDE-TNCVVIVE  147 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~~-~~~~l~v~  147 (168)
                      +|+|.|.|.|.|..+... ....|.|.
T Consensus       215 ~D~G~Y~C~a~~~~~~~~g~~t~l~V~  241 (247)
T 2ghw_B          215 EDFAVYYCQQRSNWPPTFGQGTKVEVK  241 (247)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             HHCEEEEEEEccCCCceEcCCEEEEEC
Confidence            999999999998643322 23355554

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.35  E-value=7.9e-12  Score=85.25  Aligned_cols=96  Identities=23%  Similarity=0.397  Sum_probs=71.9

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-----eEEEecCCEE---EEEEccCCCCCCeE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-----YSMSYSDGVV---SMEIIDCKPEDSGE  126 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-----~~~~~~~~~~---~l~i~~~~~~d~G~  126 (168)
                      ..+|.|...+.+..+.+|+.+.|.|.+.+.|.+.+.|++++..+....     ......++..   .+.|.++...|+|.
T Consensus         7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~   86 (212)
T 2v9r_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGV   86 (212)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEE
T ss_pred             cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeE
Confidence            457888888888999999999999999999999999999998875321     1222233311   13344568999999


Q ss_pred             EEEEEEeCCcce-EEEEEEEEeeCC
Q psy12421        127 YKCVATNKHGTD-ETNCVVIVESEE  150 (168)
Q Consensus       127 Y~C~a~n~~g~~-~~~~~l~v~~~p  150 (168)
                      |.|.+.|..|.. .....|.|...+
T Consensus        87 Y~C~~~n~~g~~~~~~~~l~V~~~~  111 (212)
T 2v9r_A           87 YVCVARNYLGEAVSHDASLEVAILR  111 (212)
T ss_dssp             EEEEEEETTEEEECCCEEEEECEEC
T ss_pred             EEEEEECCCCceeecceEEEEEecc
Confidence            999999998875 446667776543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.35  E-value=2e-12  Score=87.31  Aligned_cols=112  Identities=10%  Similarity=0.095  Sum_probs=72.5

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccce----eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQV----RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVK   90 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~   90 (168)
                      ..+.+.++...|.|.  |.|.....    .....+.+.+.  ....+|.+...+ +..+.+|+.+.|.|.+.+ +.+.+.
T Consensus        57 ~~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~s~~~~l~V~--~~~~~p~i~~~p-~~~v~~G~~v~L~C~~~~-~~~~~~  130 (188)
T 1oll_A           57 VKFYIPDMNSRMAGQ--YSCIYRVGELWSEPSNLLDLVVT--EMYDTPTLSVHP-GPEVISGEKVTFYCRLDT-ATSMFL  130 (188)
T ss_dssp             EEEEESSCCGGGCEE--EEEEEEETTEECCCCCCEEEEEE--SCSCCCEEEEES-CSEEETTCEEEEEEECSS-SCSEEE
T ss_pred             eEEEeCcCCcccCeE--EEEEecCCCCCCCCCCceEEEec--ccCCCCeEEECC-CCccccCCEEEEEEEcCC-CCCEEE
Confidence            345566788888666  43332110    11122333322  222367776555 466889999999999866 567999


Q ss_pred             EEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         91 WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        91 W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      |+|++..+..   ..........|.|.+++.+|+|.|+|.|.|..
T Consensus       131 w~k~g~~~~~---~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~  172 (188)
T 1oll_A          131 LLKEGRSSHV---QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNN  172 (188)
T ss_dssp             EEEESSSCEE---EEEECSSEEEEEEEECCGGGCEEEEEECEEET
T ss_pred             EEECCccccc---cccCCCceeEEEECCCCcCCCcEEEEEEEcCC
Confidence            9999865532   11123334479999999999999999999864

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.35  E-value=2.9e-12  Score=87.81  Aligned_cols=98  Identities=14%  Similarity=0.149  Sum_probs=73.1

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCe-eEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+....       +  .|.|.+++..|+|.|+|.+.|.
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~-------~--~L~i~~v~~~D~G~Y~C~a~n~   76 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA-------S--SYFIDAATVDDSGEYRCQTQLS   76 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS-------S--EEEESSCCGGGCEEEEEEETTS
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc-------c--EEEEecccccCCEEEEEEeCCC
Confidence            356777777778899999999999999988776 99999998776532       2  7999999999999999999885


Q ss_pred             CcceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        135 HGTDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       135 ~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      .  ....+.|.|...+..   ...+...+.+|+
T Consensus        77 ~--~s~~~~l~V~~~p~~---~~~~~~~v~~G~  104 (204)
T 3sgj_C           77 T--LSDPVQLEVHIGWLL---LQAPRWVFKEED  104 (204)
T ss_dssp             B--CCCCEEEEEECSSEE---EECSCSEEETTC
T ss_pred             c--ccccEEEEEecCceE---ecCCceeEeCCC
Confidence            3  334556666654422   122334555554

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.35  E-value=6.7e-12  Score=95.06  Aligned_cols=92  Identities=15%  Similarity=0.133  Sum_probs=64.9

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      .+...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...............|.|.+++..|+|.|+|.|.|..|..
T Consensus        50 ~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~  129 (423)
T 3qs7_E           50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY  129 (423)
T ss_dssp             ------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEE
T ss_pred             cceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcE
Confidence            34445557889999999999999999999999999987765422111112223469999999999999999999999998


Q ss_pred             EEEEEEEEeeCC
Q psy12421        139 ETNCVVIVESEE  150 (168)
Q Consensus       139 ~~~~~l~v~~~p  150 (168)
                      ...+.|.|..+|
T Consensus       130 ~~~~~l~V~~~p  141 (423)
T 3qs7_E          130 TILFTVSIRNTL  141 (423)
T ss_dssp             EEEEEEEEC---
T ss_pred             EEEEEEEEecCc
Confidence            888888887543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.34  E-value=2.1e-12  Score=98.94  Aligned_cols=82  Identities=24%  Similarity=0.551  Sum_probs=66.6

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC---CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET  140 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  140 (168)
                      +....+.+|+++.|.|.+.|.|.|.+.|++++..+..   ........++  +|.|.+++.+|+|.|+|.|.|..|....
T Consensus       392 ~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  469 (477)
T 2id5_A          392 AQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG--TLEVRYAQVQDNGTYLCIAANAGGNDSM  469 (477)
T ss_dssp             CEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTS--CEEESSCCSTTCEEEEEEEEETTEEEEE
T ss_pred             cccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCC--EEEEeeCChHHCEEEEEEEEeCCCcEEE
Confidence            3567899999999999999999999999999876542   1111222344  6999999999999999999999999988


Q ss_pred             EEEEEEe
Q psy12421        141 NCVVIVE  147 (168)
Q Consensus       141 ~~~l~v~  147 (168)
                      .+.|.|.
T Consensus       470 ~~~l~V~  476 (477)
T 2id5_A          470 PAHLHVR  476 (477)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEe
Confidence            8888875

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.34  E-value=4.5e-12  Score=94.06  Aligned_cols=93  Identities=25%  Similarity=0.399  Sum_probs=72.9

Q ss_pred             CCCeEEeecCCeEE---ecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCCC-CCCeEEEEE
Q psy12421         56 SAPNFTFLLRPRVM---QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKP-EDSGEYKCV  130 (168)
Q Consensus        56 ~~p~~~~~~~~~~~---~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~  130 (168)
                      .+|.|...+.+..+   .+|+.+.|.|.+.|.|.+.+.|++++..+... ...+...++  .|.|.++.. .|+|.|+|.
T Consensus         3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~~~~--~L~i~~~~~~~D~G~Y~C~   80 (382)
T 1cs6_A            3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG--DLVISNPVKAKDAGSYQCV   80 (382)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT--EEEEESCCHHHHCEEEEEE
T ss_pred             CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEeeCC--eEEEecccccccCEEEEEE
Confidence            36888888888776   68999999999999999999999999988642 222333455  789999986 999999999


Q ss_pred             EEeCCcceEE-EEEEEEeeCC
Q psy12421        131 ATNKHGTDET-NCVVIVESEE  150 (168)
Q Consensus       131 a~n~~g~~~~-~~~l~v~~~p  150 (168)
                      +.|..|.... ...|.|...+
T Consensus        81 a~n~~g~~~s~~~~l~v~~~~  101 (382)
T 1cs6_A           81 ATNARGTVVSREASLRFGFLQ  101 (382)
T ss_dssp             EEETTEEEECCCEEEEEEEEC
T ss_pred             EEcCCcEEEecceEEEeeccc
Confidence            9999887532 4566665544

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.34  E-value=1.6e-12  Score=90.04  Aligned_cols=126  Identities=12%  Similarity=0.075  Sum_probs=80.7

Q ss_pred             CceeEEEEeCCCCCCCCCCcccc----eeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQ----VRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKW   91 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W   91 (168)
                      .+.+.++...|.|.  |.|....    ......+.+.+.  ....+|.+...+ +..+.+|+.++|.|.+.+.|.+.+.|
T Consensus        65 ~L~I~~v~~~D~G~--Y~C~a~n~~~~~~~s~~~~l~V~--~~~~~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W  139 (218)
T 1uct_A           65 EFVIDHMDANKAGR--YQCQYRIGHYRFRYSDTLELVVT--GLYGKPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSL  139 (218)
T ss_dssp             EEEECSCCGGGCEE--EEEEEEETTTEEEECCCEEEEEE--CSSCCCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEE
T ss_pred             EEEEcccccccCEE--EEEEEEcCCCceeecCCEEEEEc--CcccCCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEE
Confidence            56677788888666  4333221    111222333332  222456665544 56788999999999777788899999


Q ss_pred             EeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc-----ceEEEEEEEEeeC
Q psy12421         92 YKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG-----TDETNCVVIVESE  149 (168)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~  149 (168)
                      +|+|..+.... .  .......|.|.+++.+|+|.|+|.|.|...     ..+..+.|.|.+.
T Consensus       140 ~k~g~~~~~~~-~--~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~  199 (218)
T 1uct_A          140 AKEGELSLPQH-Q--SGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVVTDS  199 (218)
T ss_dssp             EETTCSSCCSE-E--ECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEEC--
T ss_pred             EECCCcccccc-c--CCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEEecC
Confidence            99997665421 1  122233799999999999999999998642     1234566777654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.34  E-value=5.2e-12  Score=93.81  Aligned_cols=94  Identities=20%  Similarity=0.327  Sum_probs=73.0

Q ss_pred             CCCeEEeecCC-eEEecCCcEEEEEEEeccCCCeeEEEe-CCEECCC-CCeEEEecCCEEEEEEccCCCCC------CeE
Q psy12421         56 SAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYK-GNRELSK-RDYSMSYSDGVVSMEIIDCKPED------SGE  126 (168)
Q Consensus        56 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~i~W~~-~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d------~G~  126 (168)
                      .+|.|...+.+ ..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.. ........++  .|.|.++...|      +|.
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~~~~~~--~L~i~~~~~~d~~~~~d~G~   79 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG--KLVFPPFRAEDYRQEVHAQV   79 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBEECSTT--EEEECCCCGGGCCHHHHEEE
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceEEcCCc--eEEecccChhhccccccCce
Confidence            46888888776 457789999999999999999999999 7776654 2233344555  79999999887      999


Q ss_pred             EEEEEEeCCcce-EEEEEEEEeeCCC
Q psy12421        127 YKCVATNKHGTD-ETNCVVIVESEEE  151 (168)
Q Consensus       127 Y~C~a~n~~g~~-~~~~~l~v~~~p~  151 (168)
                      |+|.|.|..|.. ...+.|.+..+|.
T Consensus        80 Y~C~a~n~~g~~~s~~~~v~v~~~p~  105 (388)
T 2v5m_A           80 YACLARNQFGSIISRDVHVRAVVAQY  105 (388)
T ss_dssp             EEEEEEETTEEEECCCEEEEEECCCC
T ss_pred             EEEEEEccCCeEEecceEEEEccccc
Confidence            999999999874 3456666665543

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.34  E-value=1.1e-11  Score=85.25  Aligned_cols=84  Identities=15%  Similarity=0.221  Sum_probs=63.0

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCC-CCeEEEecC--CEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSK-RDYSMSYSD--GVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~-~~~~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      |.|.. ..+..+.+|+.+.|.|.+. +.|.|.+.|++++..+.. .++.+....  +..+|.|.++..+|+|.|+|.|.|
T Consensus         4 p~~~~-~~~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a~N   82 (207)
T 3rbs_A            4 PFTKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQD   82 (207)
T ss_dssp             --CCE-EEEEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEECTTTCEEEEEESCCCGGGCEEEEEEEEE
T ss_pred             Ceeec-CCceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEEeCCCCEEEEEECCCChhhCEEEEEEEEC
Confidence            55543 3357788999999999986 479999999999998865 344444333  666799999999999999999999


Q ss_pred             CCcceEEEEEE
Q psy12421        134 KHGTDETNCVV  144 (168)
Q Consensus       134 ~~g~~~~~~~l  144 (168)
                        |.......+
T Consensus        83 --g~a~~~~~~   91 (207)
T 3rbs_A           83 --GKATNHSTV   91 (207)
T ss_dssp             --TTEEEEEEE
T ss_pred             --CCeEEEEEE
Confidence              554444443

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.34  E-value=4.3e-12  Score=91.65  Aligned_cols=91  Identities=22%  Similarity=0.446  Sum_probs=70.7

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      ..+|.|.... +..+.+|+.+.|.|.+.+. |.+.+.|++++..+.... +.+  ..+...|.|.+++..|+|.|+|.+.
T Consensus         5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~C~~~   81 (317)
T 2y25_A            5 FTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF--KDGICTLLITEFSKKDAGIYEVILK   81 (317)
T ss_dssp             SSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC-------CCEEEEETTCCSTTCSCEEEEEE
T ss_pred             cCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEE--ECCeEEEEEccCCcccCeEEEEEEE
Confidence            3578887444 5889999999999999887 789999999999886432 222  2444589999999999999999999


Q ss_pred             eCCcceEEEEEEEEee
Q psy12421        133 NKHGTDETNCVVIVES  148 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~  148 (168)
                      |..|.....+.|.|..
T Consensus        82 n~~g~~~~~~~l~v~~   97 (317)
T 2y25_A           82 DDRGKDKSRLKLVDEA   97 (317)
T ss_dssp             SSSCEEEEEECCSTHH
T ss_pred             CCCCcEEEEEEEEEec
Confidence            9999877666665543

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.34  E-value=7.4e-12  Score=98.93  Aligned_cols=138  Identities=14%  Similarity=0.125  Sum_probs=87.7

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcc-eeeEeeecccCCC-eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPL-QITFWQETVESAP-NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWY   92 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p-~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~   92 (168)
                      ..+.+.++...|.+.  |.|.   +.+.... ........+..+| .+...+....+..|+.+.|.|.+.|.|.|.+.|+
T Consensus       342 ~~L~i~~~~~~d~G~--Y~C~---a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~  416 (642)
T 1e07_A          342 RTLTLLSVTRNDVGP--YECG---IQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWL  416 (642)
T ss_pred             CEEEEeccCcccCee--EEEE---EeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEE
Confidence            346666777777555  4322   2222111 1111111222333 2344556678889999999999999999999999


Q ss_pred             eCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE--EEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421         93 KGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN--CVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~--~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      +++..+...        .  .|.|.++...|+|.|+|.|.|..|....+  +.+.|...+..+.....+...+.+|+
T Consensus       417 ~~g~~~~~~--------~--~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~  483 (642)
T 1e07_A          417 IDGNIQQHT--------Q--ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKD  483 (642)
T ss_pred             ECCEEcCCC--------c--eEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCC
Confidence            999876532        1  68999999999999999999999876554  44555544333332223334455554

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.34  E-value=5.1e-12  Score=92.34  Aligned_cols=84  Identities=13%  Similarity=0.151  Sum_probs=65.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC---CC-eeEEEeCCEEC-CCCCeEEEe---cC--CEEEEEEccCCCCCCe-EEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP---PP-TVKWYKGNREL-SKRDYSMSY---SD--GVVSMEIIDCKPEDSG-EYKCVA  131 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p---~p-~i~W~~~~~~~-~~~~~~~~~---~~--~~~~l~i~~~~~~d~G-~Y~C~a  131 (168)
                      .+....+.+|+.+.|.|.+.|.|   .| .+.|++++..+ .........   ..  ....|.|.++...|+| .|+|.|
T Consensus       234 ~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a  313 (329)
T 3oq3_B          234 LDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRG  313 (329)
T ss_dssp             CCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEE
T ss_pred             cCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEE
Confidence            55667889999999999999998   77 88999998864 222211111   11  2347999999999999 999999


Q ss_pred             EeCCcceEEEEEEEE
Q psy12421        132 TNKHGTDETNCVVIV  146 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v  146 (168)
                      .|..|.....+.|.|
T Consensus       314 ~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          314 HNYYFDKTLTTTVVL  328 (329)
T ss_dssp             ECSSCEEEEEEEEEE
T ss_pred             EecCCceEEEEEEEe
Confidence            999999988888776

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.34  E-value=2.2e-12  Score=93.30  Aligned_cols=118  Identities=18%  Similarity=0.276  Sum_probs=78.2

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeec---CCeEEecCCcEEEEEEE------eccC
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLL---RPRVMQVRQTCKLLCCL------SGKP   85 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~~~~~~~g~~~~l~C~~------~g~p   85 (168)
                      ..|.+.++...|.|.+.+  ........  ....+.......+|.+...+   ....+..|+.+.|.|.+      .|.|
T Consensus        62 ~~L~i~~v~~~D~G~Y~C--~a~n~~g~--~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p  137 (315)
T 1itb_B           62 EKLWFVPAKVEDSGHYYC--VVRNSSYC--LRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNE  137 (315)
T ss_dssp             SBEECTTCCGGGCSCCEE--CCCSSSCC--CCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTC
T ss_pred             CeEEECCCChhhCEEEEE--EEeCCceE--EEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCC
Confidence            356777888888766433  32211111  11111111122344432222   13567889999999998      8899


Q ss_pred             CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE-eCCcce
Q psy12421         86 PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT-NKHGTD  138 (168)
Q Consensus        86 ~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~-n~~g~~  138 (168)
                      .|.+.|++++..+..........++  .|.|.++...|+|.|+|.|. |..|..
T Consensus       138 ~~~i~W~k~~~~l~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~~n~~g~~  189 (315)
T 1itb_B          138 LPKLQWYKDCKPLLLDNIHFSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGKQ  189 (315)
T ss_dssp             CCCCEEEETTEECCCCSSSEEEETT--EEEESSCCGGGCEEEEEEEEEEETTEE
T ss_pred             CCEEEEEECCEECCCccceEeecCc--eEEEEeceehhCcEEEEEEEcCCCCcE
Confidence            9999999999988654333444455  79999999999999999999 788876

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.34  E-value=3.7e-12  Score=89.93  Aligned_cols=95  Identities=14%  Similarity=0.180  Sum_probs=68.2

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EECC-------------CCCeEEEecCCEEEEEEccCCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RELS-------------KRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~~-------------~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      +|.+...+....+.+|+++.|.|.+.+.|.+.+.|+++.  ..+.             ..++.........+|.|.+++.
T Consensus       138 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  217 (256)
T 3umt_A          138 DIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSRSGSDYSLTISSLES  217 (256)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCG
T ss_pred             ccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEecCCCEEEEEECCCCh
Confidence            677777787889999999999999999999999999842  1111             1334444445556799999999


Q ss_pred             CCCeEEEEEEEeCCcceEE-EEEEEEeeCCC
Q psy12421        122 EDSGEYKCVATNKHGTDET-NCVVIVESEEE  151 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~  151 (168)
                      +|+|.|.|.+.|..+.... ...|.|.+.+.
T Consensus       218 ~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~~~  248 (256)
T 3umt_A          218 EDFVDYYCLQYASSPPTFGGGTKLEIKRAAA  248 (256)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEEC----
T ss_pred             hHCEEEEEEEeeCCCcEECCCEEEEEECCCc
Confidence            9999999999986544322 45677765443

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.33  E-value=2.5e-12  Score=90.68  Aligned_cols=98  Identities=16%  Similarity=0.174  Sum_probs=67.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCC----eeEEEeCC--EECC-------------CCCeEEEecCCEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP----TVKWYKGN--RELS-------------KRDYSMSYSDGVVSMEI  116 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p----~i~W~~~~--~~~~-------------~~~~~~~~~~~~~~l~i  116 (168)
                      .+|.+...+....+.+|+++.|.|.+.+.+.+    .+.|+++.  ..+.             ..++..........|.|
T Consensus       132 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  211 (253)
T 3uzq_A          132 SELVMTQTPASLAVSLGQRATISCRASENVDRYGNSFMHWYQQKAGQPPKLLIYRASNLESGIPARFSGSGSRTDFTLTI  211 (253)
T ss_dssp             --CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ccceEECcCCeEEEeCCCCEEEEEEecCccccCCCcEEEEEEECCCCCCEEEEEEccccCCccCCceEEeCCCCEEEEEE
Confidence            35777777878899999999999999998876    89999842  2111             12333333445567999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcceEE-EEEEEEeeCCCch
Q psy12421        117 IDCKPEDSGEYKCVATNKHGTDET-NCVVIVESEEESK  153 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~~  153 (168)
                      .+++.+|+|.|.|.+.|..+.... ...|.|...+..+
T Consensus       212 ~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~~~~~  249 (253)
T 3uzq_A          212 NPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRPLEHH  249 (253)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC----
T ss_pred             CCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCCCCCc
Confidence            999999999999999986544322 4456666554443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.33  E-value=3.1e-11  Score=83.05  Aligned_cols=83  Identities=14%  Similarity=0.205  Sum_probs=67.6

Q ss_pred             eEEecCCcEEEEEEEeccCCC--eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ..+..|+++.|.|.+ +.|.|  .++|++.+..+  ....  ...+...|.|.+++.+|+|.|.|.+.|..|.....+.|
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l--~~~~--~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~l   91 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL--GAVQ--SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQL   91 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT--CCEE--EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc--CcEE--ecCCccEEEECccCcccCceEEEEEEeCCCceEEEEEE
Confidence            588899999999999 98888  99999865333  2211  23444579999999999999999999999888889999


Q ss_pred             EEeeCCCchh
Q psy12421        145 IVESEEESKE  154 (168)
Q Consensus       145 ~v~~~p~~~~  154 (168)
                      .|..+|..+.
T Consensus        92 tV~~~P~~~~  101 (210)
T 1gsm_A           92 LVYAFPNQLT  101 (210)
T ss_dssp             EEEBCCSEEE
T ss_pred             EEEecCCCcE
Confidence            9998886555

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.32  E-value=9e-12  Score=97.33  Aligned_cols=144  Identities=17%  Similarity=0.171  Sum_probs=95.6

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcce----eeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCee--
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQ----ITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTV--   89 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i--   89 (168)
                      .+.+.++...|.+.  |.|.   +.+.....    .......+..+|.+...+....+.+|+.+.|.|.+.+.|.|.+  
T Consensus       291 ~L~i~~v~~~d~G~--Y~C~---a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~  365 (585)
T 2ocw_A          291 SVVITGLRKEDAGR--YLCG---AHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKY  365 (585)
T ss_pred             EEEEccCChhhCEE--EEEE---EEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEE
Confidence            46677777788665  4332   22211111    1223334556778877777888999999999999999999987  


Q ss_pred             --EEEe--CCE--ECCC----------CCeEEEe--cCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         90 --KWYK--GNR--ELSK----------RDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        90 --~W~~--~~~--~~~~----------~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                        .|++  ++.  .+..          .++.+..  .++..+|.|.++...|+|.|+|.| |..|.....+.|.|...+.
T Consensus       366 w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~~~~p  444 (585)
T 2ocw_A          366 WCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKIIEGEP  444 (585)
T ss_pred             EEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEEecCcc
Confidence              7999  776  3321          1222221  234446999999999999999999 9999888888888876533


Q ss_pred             chhhhhhhhhcccCCC
Q psy12421        152 SKEQQELAHNFLYSGE  167 (168)
Q Consensus       152 ~~~~~~~~~~~~~~g~  167 (168)
                      ....  .....+.+|+
T Consensus       445 ~~~~--~~~~~v~~G~  458 (585)
T 2ocw_A          445 NLKV--PGNVTAVLGE  458 (585)
T ss_pred             cccc--CCceeEecCC
Confidence            3222  2333455554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.31  E-value=1.6e-12  Score=99.06  Aligned_cols=96  Identities=24%  Similarity=0.342  Sum_probs=70.9

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC-EECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN-RELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~-~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +.+|.+...+.+..+.+|+++.|.|.+.  |.|.+.|++++ ..+...   .......++  +|.|.+++.+|+|.|+|.
T Consensus       350 C~~P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~~~~g--~L~i~~v~~~D~G~Y~C~  425 (452)
T 3zyi_A          350 CSAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG--TLNFSHVLLSDTGVYTCM  425 (452)
T ss_dssp             CCCCCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEECTTS--CEECSSCCTTCCEEEEEE
T ss_pred             ccCcccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEECCCC--eEEEeecCHHHCEEEEEE
Confidence            3567777777888999999999999987  99999999954 333221   112223445  699999999999999999


Q ss_pred             EEeCCcceEEEEEEEEeeCCCchh
Q psy12421        131 ATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus       131 a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      |.|..|....++.|.|.+.+.++.
T Consensus       426 a~N~~G~~~~~~~l~v~~~~~~~~  449 (452)
T 3zyi_A          426 VTNVAGNSNASAYLNVSTAGTHHH  449 (452)
T ss_dssp             EECSSCEEEEEEEEEC--------
T ss_pred             EEcCCCcEEEEEEEEEEcccccCC
Confidence            999999999999999987665543

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.31  E-value=7.6e-12  Score=96.65  Aligned_cols=95  Identities=19%  Similarity=0.242  Sum_probs=67.5

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEEeCCEECCCCCe-EEEecCC----EEEEEEccCCCCCCeEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWYKGNRELSKRDY-SMSYSDG----VVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~G~Y  127 (168)
                      ..+|.+........+.+|+.+.|.|.+.|. |.| .+.|++++..+..... .....++    ...|.|.++...| |.|
T Consensus       217 ~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y  295 (523)
T 2rcj_C          217 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY  295 (523)
T ss_pred             CcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCC-ceE
Confidence            456666544444556789999999999886 878 8999999976532111 1111222    2379999999999 999


Q ss_pred             EEEEEeCCcceEEEEEEEEeeCC
Q psy12421        128 KCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      +|.|.|..|.......|.+...|
T Consensus       296 ~C~a~n~~g~~~~~~~l~v~~~P  318 (523)
T 2rcj_C          296 ICNVNHKPSNTKVDKRVEPLSLP  318 (523)
T ss_pred             EEEEEeCCCCcceEEecCCCcCc
Confidence            99999999987766666654443

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.31  E-value=1.5e-12  Score=87.66  Aligned_cols=113  Identities=14%  Similarity=0.075  Sum_probs=72.2

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccce----eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQV----RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVK   90 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~   90 (168)
                      ..+.+.++...|.|.  |.|.....    .....+.+.+  .....+|.+...+ +..+.+|+.+.|.|.+.+. ++.+.
T Consensus        52 ~~L~i~~v~~~D~G~--Y~C~a~n~~g~~~~s~~~~l~V--~~~~~~p~i~~~p-~~~v~~G~~v~l~C~~~~~-~~~~~  125 (184)
T 2gi7_A           52 AVLFIPAMKRSLAGR--YRCSYQNGSLWSLPSDQLELVA--TGVFAKPSLSAQP-GPAVSSGGDVTLQCQTRYG-FDQFA  125 (184)
T ss_dssp             SEEEESSCCGGGCEE--EEEEEEETTEEBCCCCCEEEEE--ESSSCCCEEEEEC-CCSSCCTTCEEEEEECSSC-CCEEE
T ss_pred             cEEEECcCChhhCce--EEEEEEcCCCccCCCCCEEEEe--cCcCCCCEEEeCC-CceecCCCcEEEEEEcCCC-CcEEE
Confidence            345666778888666  43332110    1112222322  2223456776555 4567789999999998664 47999


Q ss_pred             EEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         91 WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        91 W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      |+|++..+.......   .....|.|.+++.+|+|.|+|.|.|..+
T Consensus       126 w~k~g~~~~~~~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~n~~~  168 (184)
T 2gi7_A          126 LYKEGDPAPYKNPER---WYRASFPIITVTAAHSGTYRCYSFSSRD  168 (184)
T ss_dssp             EEECCCCTTSCCCCE---EEEESSSEEEETTCCSEEEEEEEECTTS
T ss_pred             EEECCCcCcceecCC---CceEEEEEccCCccCCeEEEEEEEeCCC
Confidence            999998765422111   1122588999999999999999999864

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.31  E-value=6.8e-13  Score=88.95  Aligned_cols=65  Identities=18%  Similarity=0.224  Sum_probs=51.8

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +..+.|.|.+.|.|.|.+.|++++..+....          .+.|..+...|+|.|+|.|.|..|.......|.+
T Consensus       110 ~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~----------~~~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~~  174 (176)
T 1hng_A          110 CSNATLTCEVLEGTDVELKLYQGKEHLRSLR----------QKTMSYQWTNLRAPFKCKAVNRVSQESEMEVVNC  174 (176)
T ss_dssp             TTTTEEEEECSSCSSCEEEEEETTEEEEEES----------SSEEEEECSCCSSCEEEEEEETTEEEEEEECCCC
T ss_pred             CCcEEEEEEecCCCCcEEEEEECCEECCCCC----------cEEEEEEEccCCeEEEEEEEecCCCceecccccC
Confidence            4569999999999999999999998764321          1334466789999999999999999887766543

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.31  E-value=3e-12  Score=87.77  Aligned_cols=73  Identities=16%  Similarity=0.323  Sum_probs=57.3

Q ss_pred             ecCCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEecCCEEEEEEccC-CCCCCeEEEEEEEeCCcce-EEEEEEE
Q psy12421         70 QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDC-KPEDSGEYKCVATNKHGTD-ETNCVVI  145 (168)
Q Consensus        70 ~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~  145 (168)
                      .+|+++.|.|.  |.|.|.+.|++++..+...  ...+...++  .|.|.++ ..+|+|.|+|.|.|..|.. ...+.|.
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~~~~~--~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEEEETT--EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             ecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEecCCC--EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            38999999998  8899999999999887542  122222345  7999999 9999999999999999963 4455555


Q ss_pred             E
Q psy12421        146 V  146 (168)
Q Consensus       146 v  146 (168)
                      +
T Consensus       202 ~  202 (204)
T 1sy6_A          202 A  202 (204)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.31  E-value=6.8e-12  Score=85.51  Aligned_cols=110  Identities=11%  Similarity=0.091  Sum_probs=72.8

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe--EEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY--SMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+.....  ..........|.|.+++..|+|.|.|.+.|
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~~   84 (201)
T 1nkr_A            7 RKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSV   84 (201)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEB
T ss_pred             CCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeecCCCCceEEEEeccCCcccCeEEEEeEec
Confidence            4677776665 67889999999999874 7889999999865432110  001111233799999999999999999987


Q ss_pred             CCc-----ceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        134 KHG-----TDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       134 ~~g-----~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      ...     .....+.|.|...+..+.....+...+.+|+
T Consensus        85 ~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~  123 (201)
T 1nkr_A           85 THSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGE  123 (201)
T ss_dssp             TTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTC
T ss_pred             CCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCC
Confidence            531     2234566777665433333333444667775

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.30  E-value=2.6e-12  Score=97.40  Aligned_cols=116  Identities=16%  Similarity=0.066  Sum_probs=80.0

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCc----ceeeEeeecccCCCeEEeec--CCeEEecCCcEEEEEEEeccCCCee
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREP----LQITFWQETVESAPNFTFLL--RPRVMQVRQTCKLLCCLSGKPPPTV   89 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~i   89 (168)
                      .+.+.++...|.+.  |.   +...+...    .........+..+|.+....  ....+.+|+.+.|.|.+.|.|.|.+
T Consensus       328 ~L~i~~~~~~d~G~--Y~---C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i  402 (450)
T 1z7z_I          328 QLLLKATPEDNGRS--FS---CSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL  402 (450)
T ss_dssp             CEEEECCGGGTTCE--EE---EEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEE
T ss_pred             EEEEecCcccCCce--EE---EEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcE
Confidence            46666677777554  42   23322111    11122233445667766543  4568899999999999999999999


Q ss_pred             EEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421         90 KWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus        90 ~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      .|++++..+..       .+.  .+   .+...|+|.|+|.|.|..|.....+.|.|.+
T Consensus       403 ~W~~~g~~~~~-------~g~--~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  449 (450)
T 1z7z_I          403 KCLKDGTFPLP-------IGE--SV---TVTRDLEGTYLCRARSTQGEVTREVTVNVLS  449 (450)
T ss_dssp             EEEETTTEECC-------TTS--CE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEECCcccCC-------CCC--eE---eEehhhCeEEEEEEEeCCCceeEEEEEEEEc
Confidence            99999863222       111  12   5778999999999999999999999998875

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.30  E-value=1e-11  Score=82.80  Aligned_cols=82  Identities=18%  Similarity=0.243  Sum_probs=65.8

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCe-eEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+|.+...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+..       ..+  .|.|.+++..|+|.|.|.+.|.
T Consensus         6 ~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~-------~~~--~L~i~~~~~~d~G~Y~C~~~n~   76 (175)
T 1fnl_A            6 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QAS--SYFIDAATVNDSGEYRCQTNLS   76 (175)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------SCS--EEEESSCCGGGCEEEEEECSSS
T ss_pred             CCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccC-------Cce--EEEEeCCCcccCEEEEEEeeCC
Confidence            467888888888999999999999999988776 789999876643       223  7999999999999999999986


Q ss_pred             CcceEEEEEEEEee
Q psy12421        135 HGTDETNCVVIVES  148 (168)
Q Consensus       135 ~g~~~~~~~l~v~~  148 (168)
                      .+..  ...|.|..
T Consensus        77 ~~s~--~~~l~V~~   88 (175)
T 1fnl_A           77 TLSD--PVQLEVHI   88 (175)
T ss_dssp             CCCC--CEEEEEEC
T ss_pred             cccc--cEEEEEeC
Confidence            6543  45555553

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.29  E-value=3.9e-11  Score=81.44  Aligned_cols=125  Identities=14%  Similarity=0.219  Sum_probs=74.5

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceeccCc-----ceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEe-ccCCC
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRREP-----LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLS-GKPPP   87 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p   87 (168)
                      ...|.+.+++..|.|.  |.|..........     ..+.+........|.+....    ...|+.+.|.|.+. |.|.|
T Consensus        64 ~~~L~I~~v~~~D~G~--Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~----~~~g~~~~l~C~~~~g~P~p  137 (201)
T 1dr9_A           64 NLSIVILALRPSDEGT--YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE----IPTSNIRRIICSTSGGFPEP  137 (201)
T ss_dssp             TTEEEECSCCGGGCEE--EEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEE----CSSTTEEEEEEEEEEESSCE
T ss_pred             CcEEEEecccchhCeE--EEEEEEcCCCCccccccccEEEEEEcCCCCCCceEecc----CCCCCeEEEEEecCCccCCC
Confidence            3467788888888666  5333222111111     11111111112235544321    23488999999995 89999


Q ss_pred             eeEEEeCCEECCCCCeEEEec-C-CE-EEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         88 TVKWYKGNRELSKRDYSMSYS-D-GV-VSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        88 ~i~W~~~~~~~~~~~~~~~~~-~-~~-~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      .+.|++++..+.......... . +. ....+..+...|.|.|+|.|.|..|.....+.+
T Consensus       138 ~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s~~~~~  197 (201)
T 1dr9_A          138 HLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVNQTFNW  197 (201)
T ss_dssp             EEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEEEEEEE
T ss_pred             EEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceeeeEEec
Confidence            999999998876543222222 2 21 122334556689999999999999987766643

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.29  E-value=1.1e-12  Score=92.85  Aligned_cols=91  Identities=21%  Similarity=0.187  Sum_probs=63.2

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe--CCEECC-------------CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK--GNRELS-------------KRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~--~~~~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +...+....+.+|+++.|.|.+.+.|.+.+.|++  ++..+.             ..++..........|.|.++..+|+
T Consensus       142 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~  221 (257)
T 1f3r_B          142 LTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDV  221 (257)
T ss_dssp             SCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGC
T ss_pred             EEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEecCCCEEEEEECCCChhhC
Confidence            3444555678899999999999999989999999  444321             1234333334455799999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      |.|.|.|.|..........|.|...+
T Consensus       222 G~Y~C~a~n~~~~~g~gt~l~V~~~~  247 (257)
T 1f3r_B          222 ATYFCYQYNNGYTFGAGTKLELKAAE  247 (257)
T ss_dssp             SEEEEEEESSSEEECCCCEECCSSSC
T ss_pred             EEEEEEEeCCCCeECCCEEEEEeCCC
Confidence            99999999975111123355555443

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.29  E-value=1.1e-11  Score=87.68  Aligned_cols=131  Identities=14%  Similarity=0.056  Sum_probs=81.4

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceecc--CcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCC-----e
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRR--EPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-----T   88 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-----~   88 (168)
                      .|.+.+++..|.+.  |.|........  ...........+..+|.+...+....+.+|++++|.|.+.+.|.+     .
T Consensus        80 ~L~I~~v~~~DsG~--Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~  157 (256)
T 1nqb_A           80 YMQLSSLTSEDSAV--YYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTY  157 (256)
T ss_dssp             EEEECSCCGGGCEE--EEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBC
T ss_pred             EEEECcCChhhCEE--EEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceE
Confidence            46677788888666  43222211000  000000111233455677777777889999999999999998875     9


Q ss_pred             eEEEe--CCEECC-------------CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EEEEEEEEee
Q psy12421         89 VKWYK--GNRELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVES  148 (168)
Q Consensus        89 i~W~~--~~~~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  148 (168)
                      +.|++  ++..+.             ..++..........|.|.+++.+|+|.|.|.+.|..+.. .....|.|..
T Consensus       158 v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  233 (256)
T 1nqb_A          158 LEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKR  233 (256)
T ss_dssp             EEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEccCCEEEEEECCCChHHCEEEEEEEccCCceEECCCEEEEEEC
Confidence            99999  444221             123433334455579999999999999999999854332 2233566653

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.29  E-value=4.4e-12  Score=87.69  Aligned_cols=117  Identities=14%  Similarity=0.195  Sum_probs=73.6

Q ss_pred             CCCceeEEEEeCCCCCCCCCCccccee---ccCcceeeEeeecccCCCeEEeecCCeEEecCCcE-EEEEEE-eccCCCe
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVR---RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTC-KLLCCL-SGKPPPT   88 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~-~l~C~~-~g~p~p~   88 (168)
                      ...+.+.+++..|.|.  |.|......   ......+.+.  .....|.+...+....+..|+.+ .|.|.+ .+.|.|.
T Consensus        76 ~~~L~i~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~l~V~--~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~  151 (231)
T 2pet_A           76 QGRLVLAEAQVGDERD--YVCVVRAGAAGTAEATARLNVF--AKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPK  151 (231)
T ss_dssp             TCCEEESSCCGGGCEE--EEEEEECGGGCEEEEEEEEEEE--BCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCE
T ss_pred             CceEEEcccCcccCce--EEEEEEecCCCceEEEEEEEEE--ecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCE
Confidence            3447788888888766  433322111   1111122222  11223666666666667788887 999999 8999999


Q ss_pred             eEEEeCCEECCCCC-----eEEEe-----cCC----EEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         89 VKWYKGNRELSKRD-----YSMSY-----SDG----VVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        89 i~W~~~~~~~~~~~-----~~~~~-----~~~----~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +.|++++..+....     ..+..     ..+    ...|.|......|.|.|+|.|.|.
T Consensus       152 i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~  211 (231)
T 2pet_A          152 ITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYS  211 (231)
T ss_dssp             EEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEE
T ss_pred             EEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcC
Confidence            99999999886533     22211     111    135777755556699999999994

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.29  E-value=3.6e-11  Score=74.09  Aligned_cols=76  Identities=24%  Similarity=0.274  Sum_probs=58.1

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-----EC----------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-----EL----------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-----~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +...+....+.+|+++.|.|.+.+.|.+.+.|+++..     .+          ...++.+....+...|.|.+++.+|+
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   83 (108)
T 1jhl_L            4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             eeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEEecCCEEEEEECCCCHHHC
Confidence            4455667789999999999999999899999998531     11          01344444344556899999999999


Q ss_pred             eEEEEEEEeCC
Q psy12421        125 GEYKCVATNKH  135 (168)
Q Consensus       125 G~Y~C~a~n~~  135 (168)
                      |.|.|.+.|..
T Consensus        84 G~Y~C~~~n~~   94 (108)
T 1jhl_L           84 AMYICQQHNEY   94 (108)
T ss_dssp             SEEEEEECSSS
T ss_pred             EEEEEEEccCC
Confidence            99999999863

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.28  E-value=8.3e-12  Score=94.62  Aligned_cols=80  Identities=18%  Similarity=0.284  Sum_probs=62.4

Q ss_pred             CCCeEE-eecCCeEEecCCcEEEEEEEeccCCC---eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         56 SAPNFT-FLLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        56 ~~p~~~-~~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      .+|.+. ..+.+..+.+|+.+.|.|.+.|.|+|   .+.|++++..+......  .......|.|.++...|+|.|+|.|
T Consensus        84 ~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~--~~~~~~~L~i~~~~~~d~G~Y~C~a  161 (450)
T 1z7z_I           84 WTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--GEPAEVTTTVLVRRDHHGANFSCRT  161 (450)
T ss_dssp             BCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC--TTTEEEEEEEECCSSCSSCEEEEEE
T ss_pred             eCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeeccccc--ccccceEEEEEeeccccCceEEEEE
Confidence            355554 56666889999999999999998888   99999999877532111  1222347999999999999999999


Q ss_pred             EeCCcc
Q psy12421        132 TNKHGT  137 (168)
Q Consensus       132 ~n~~g~  137 (168)
                      .|..|.
T Consensus       162 ~n~~g~  167 (450)
T 1z7z_I          162 ELDLRP  167 (450)
T ss_dssp             EEECGG
T ss_pred             EcccCC
Confidence            999775

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=99.28  E-value=2.2e-10  Score=73.58  Aligned_cols=88  Identities=20%  Similarity=0.325  Sum_probs=64.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC---CeeEEEeCCEE--C---C-------------CCCeEEEe---cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRE--L---S-------------KRDYSMSY---SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~---p~i~W~~~~~~--~---~-------------~~~~~~~~---~~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+.   +.+.|++++..  +   .             ..+..+..   ..+..+|.|.+
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   91 (139)
T 1pko_A           12 PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQN   91 (139)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEeCCCEEEeeEccCCCCCCceEEEEEECCCCceEEEEeCCcccccccCcccCCceEEccccccCCeEEEEEcc
Confidence            444678889999999999886543   68999997631  1   0             12222221   12356899999


Q ss_pred             CCCCCCeEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        119 CKPEDSGEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      ++.+|+|.|.|.+.|..|.....+.|.|..++
T Consensus        92 v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~P~  123 (139)
T 1pko_A           92 VRFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  123 (139)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             CCHHHCEEEEEEEEcCCCceEEEEEEEEecCc
Confidence            99999999999999998888888888887543

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.28  E-value=5.9e-12  Score=89.07  Aligned_cols=87  Identities=20%  Similarity=0.302  Sum_probs=62.5

Q ss_pred             cCCeEEecCCcEEEEEEE---eccCCCeeEEEeCCE-ECCC------------------CCe--EEEe----cCCEEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCL---SGKPPPTVKWYKGNR-ELSK------------------RDY--SMSY----SDGVVSME  115 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~---~g~p~p~i~W~~~~~-~~~~------------------~~~--~~~~----~~~~~~l~  115 (168)
                      +....+.+|+.+.|.|.+   .+.|.|.+.|++++. ....                  .++  .+..    ......|.
T Consensus       125 p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  204 (268)
T 3mj6_A          125 PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIK  204 (268)
T ss_dssp             CSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSSCEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEE
T ss_pred             CCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCcceeEEEecCCCCccccccccccccceEeeccCCCCeEEEE
Confidence            335678899999999998   577999999998422 1110                  000  0000    01223799


Q ss_pred             EccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      |.++...|+|.|+|.|.|..|.....+.|.|...+
T Consensus       205 i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~  239 (268)
T 3mj6_A          205 LQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDE  239 (268)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECC-
T ss_pred             ECcCChhhCeEEEEEEEcCCceEEEEEEEEEEcCC
Confidence            99999999999999999999998888888885443

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.27  E-value=5.2e-13  Score=98.03  Aligned_cols=92  Identities=14%  Similarity=0.169  Sum_probs=42.1

Q ss_pred             CCeEEeecCCe--EEecCCcEEEEEEEe----ccCCCeeEEEeCCEECCC--CCeEEE-----e-cCC---EEEEEEccC
Q psy12421         57 APNFTFLLRPR--VMQVRQTCKLLCCLS----GKPPPTVKWYKGNRELSK--RDYSMS-----Y-SDG---VVSMEIIDC  119 (168)
Q Consensus        57 ~p~~~~~~~~~--~~~~g~~~~l~C~~~----g~p~p~i~W~~~~~~~~~--~~~~~~-----~-~~~---~~~l~i~~~  119 (168)
                      +|.+.......  .+.+|+.+.|.|.+.    |.|.|.+.|++++..+..  .+..+.     . ..+   ...|.|.++
T Consensus       224 ~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  303 (349)
T 4dep_C          224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKV  303 (349)
T ss_dssp             SCEEC----------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-----
T ss_pred             CCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeec
Confidence            67776554433  788899999999998    578999999999987654  111110     0 011   224899999


Q ss_pred             CCCCC-eEEEEEEEeCCcceEEEEEEEEee
Q psy12421        120 KPEDS-GEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       120 ~~~d~-G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      ...|+ |.|+|.|.|..|.....+.|.|..
T Consensus       304 ~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~~  333 (349)
T 4dep_C          304 TSEDLKRSYVCHARSAKGEVAKAAKVKQKV  333 (349)
T ss_dssp             --------CEEEEECSSCEEEEECC-----
T ss_pred             cHHHcCCcEEEEEEcCCCcEEEEEEEeeec
Confidence            99999 999999999999999999888865

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.27  E-value=1.6e-11  Score=86.36  Aligned_cols=129  Identities=10%  Similarity=0.090  Sum_probs=80.4

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccce----eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQV----RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVK   90 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~   90 (168)
                      ..+.+.++...|.|.  |.|.....    ....++.+.+.  ....+|.+...+ +..+.+|++++|.|.+.+. .+.+.
T Consensus        60 ~~L~I~~v~~~DsG~--Y~C~~~~~~~~s~~S~~~~L~V~--~~~~~P~i~~~p-~~~v~~G~~vtL~C~~~~~-~~~~~  133 (242)
T 1p6f_A           60 VKFYIPDMNSRMAGQ--YSCIYRVGELWSEPSNLLDLVVT--EMYDTPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFL  133 (242)
T ss_dssp             EEEEECSCCGGGCEE--EEEEEEETTEECCCCCCEEEEEE--CCSCCCEEEEES-CSEEETTCEEEEEEECTTS-CSEEE
T ss_pred             eEEEecCCCcccCeE--EEEEEecCCccccCCcceEEEee--cccCCCceEccC-CCccCCCCcEEEEEecCCC-CCEEE
Confidence            345566788888666  44433110    11222333332  222367776555 4568899999999998764 56999


Q ss_pred             EEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC--c-ceEEEEEEEEeeCCCc
Q psy12421         91 WYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH--G-TDETNCVVIVESEEES  152 (168)
Q Consensus        91 W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~--g-~~~~~~~l~v~~~p~~  152 (168)
                      |+|++..+..   ..........|.|.+++..|+|.|.|.+.|..  . ..+..+.|.|.+.+..
T Consensus       134 w~k~g~~~~~---~~~~~~~~~~l~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~~~~~~  195 (242)
T 1p6f_A          134 LLKEGRSSHV---QRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVTGDIEN  195 (242)
T ss_dssp             EEECSSSCEE---EEEECSSEEEEEEEECCGGGCEEEEEEEEEETTEECCCCCCEEEEEEC----
T ss_pred             EEECCCccCc---cccCCCceEEEEeCCCccccCEEEEEEEECCCCcccCCCCCEEEEEeccCCC
Confidence            9999865542   11123344479999999999999999999864  1 2344667777765443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.27  E-value=3e-11  Score=82.68  Aligned_cols=89  Identities=18%  Similarity=0.196  Sum_probs=65.7

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC----------C---CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL----------S---KRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~----------~---~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +...+....+.+|+++.|.|.+.+.|.+.+.|++++.  .+          .   ..++......+...|.|.+++.+|+
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~   83 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCCCEEEEEECCCChhhC
Confidence            3445667789999999999999999999999998531  11          0   1344444455566899999999999


Q ss_pred             eEEEEEEEeCCcceEE-EEEEEEee
Q psy12421        125 GEYKCVATNKHGTDET-NCVVIVES  148 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~-~~~l~v~~  148 (168)
                      |.|.|.+.|..|.... ...|.|..
T Consensus        84 G~Y~C~~~~~~~~~~~~~~~l~V~~  108 (213)
T 3d9a_L           84 GMYFCQQSNSWPYTFGGGTKLEIKR  108 (213)
T ss_dssp             EEEEEEECSSSSCEECCCEEEEECC
T ss_pred             EEEEEeeecCCcceeCCCEEEEEec
Confidence            9999999998775332 33566654

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.27  E-value=1.6e-11  Score=87.61  Aligned_cols=128  Identities=14%  Similarity=0.100  Sum_probs=83.1

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCe-EEeecCCeEEecCCcEEEEEEEeccCCCe-eEE
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPN-FTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKW   91 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W   91 (168)
                      ...+.+.++...|.|.  |.|...   +............+..+|. +...+....+.+|+.+.|.|.+.+.+.+. +.|
T Consensus        50 ~~~L~i~~~~~~d~G~--Y~C~~~---~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W  124 (289)
T 3ejj_X           50 GSTLTTRNATFKNTGT--YRCTEL---EDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSL  124 (289)
T ss_dssp             CCEEEESSCCGGGCEE--EEEECC---C-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEE
T ss_pred             ccEEEEeeeccccCEE--EEEEEe---ccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEE
Confidence            3556777788888666  433321   1111111112223333443 55566778899999999999999877765 999


Q ss_pred             Ee-CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe-CCcceEEEEEEEEee
Q psy12421         92 YK-GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN-KHGTDETNCVVIVES  148 (168)
Q Consensus        92 ~~-~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v~~  148 (168)
                      ++ ++..+...........+  .|.|.++...|+|.|+|.+.| ..+.....+.|.|..
T Consensus       125 ~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~  181 (289)
T 3ejj_X          125 MREGGRQVLRKTVYFFSPWR--GFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNR  181 (289)
T ss_dssp             EEGGGEECCTTCCEEEETTT--EEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEES
T ss_pred             EecCCeecCCCccEEECCCC--CEEEeecccccCEEEEEEEEeCCCccccccEEEEEEE
Confidence            86 66666543333333444  699999999999999999994 455556677788874

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.26  E-value=1.8e-11  Score=86.14  Aligned_cols=111  Identities=11%  Similarity=-0.002  Sum_probs=73.8

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ..+|.|...+.. .+.+|++++|.|.+.+ +.+.+.|+|++..+...............|.|.+++..|+|.|.|.+.|.
T Consensus         5 ~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~   82 (242)
T 1p6f_A            5 LPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG   82 (242)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCTTCCEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccCCcceeEEEecCCCcccCeEEEEEEecC
Confidence            346788777766 8899999999999865 46789999999765310000001223347999999999999999999887


Q ss_pred             Ccce--EEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        135 HGTD--ETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       135 ~g~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      .+..  ...+.|.|.+....+.....+...+.+|+
T Consensus        83 ~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~  117 (242)
T 1p6f_A           83 ELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGE  117 (242)
T ss_dssp             TEECCCCCCEEEEEECCSCCCEEEEESCSEEETTC
T ss_pred             CccccCCcceEEEeecccCCCceEccCCCccCCCC
Confidence            5532  34566777653322322233444566665

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.26  E-value=2.6e-12  Score=87.97  Aligned_cols=122  Identities=15%  Similarity=0.166  Sum_probs=78.5

Q ss_pred             ceeEEEEeCCCCCCCCCCcccce-----eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CC-Cee
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQV-----RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PP-PTV   89 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i   89 (168)
                      |.+.+++..|.|.  |.|.....     .......+.+.. ....+|.+...+....+..|+.+.|.|.+.|. |+ +.+
T Consensus        72 L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v  148 (213)
T 3mj8_L           72 LTISKAQAGDEAD--YYCQSWDGTNSAWVFGSGTKVTVLG-QPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAV  148 (213)
T ss_dssp             EEESSCCGGGCEE--EEEEEEETTTTEEEEBCCEEEEEEC-SCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEECCCChhhCEE--EEEEeccCCcceeEEcCceEEEEeC-CCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEE
Confidence            6677778888666  43222211     111222222221 22267888776666555589999999999986 33 499


Q ss_pred             EEEeCCEECCCCC---eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         90 KWYKGNRELSKRD---YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        90 ~W~~~~~~~~~~~---~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      .|++++..+....   .... .++    ...|.|..+...|.|.|+|.|.|..+....++
T Consensus       149 ~W~k~g~~l~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          149 TWEADGTPITQGVKTTQPSK-SDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             EEEETTEEECTTEEECCCEE-ETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEE
T ss_pred             EEEcCCcccCCCcccCCcCc-cCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeee
Confidence            9999999875421   0011 222    12588999999999999999999987766555

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.26  E-value=4.7e-11  Score=81.66  Aligned_cols=83  Identities=17%  Similarity=0.260  Sum_probs=63.2

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ...+.+|+++.|.|.+.+.|.+.+.|++.  +..+             ...++......+...|.|.+++.+|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   88 (213)
T 3mj8_L            9 LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSNSGNMATLTISKAQAGDEADYYCQ   88 (213)
T ss_dssp             EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEecCCEEEEEECCCChhhCEEEEEE
Confidence            56788999999999999999999999983  2111             11244444455666899999999999999999


Q ss_pred             EEeCCc---ceEEEEEEEEee
Q psy12421        131 ATNKHG---TDETNCVVIVES  148 (168)
Q Consensus       131 a~n~~g---~~~~~~~l~v~~  148 (168)
                      +.|..|   .......|.|..
T Consensus        89 ~~~~~~~~~~~~~~~~l~V~~  109 (213)
T 3mj8_L           89 SWDGTNSAWVFGSGTKVTVLG  109 (213)
T ss_dssp             EEETTTTEEEEBCCEEEEEEC
T ss_pred             eccCCcceeEEcCceEEEEeC
Confidence            999988   334456677763

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.26  E-value=3.3e-11  Score=89.41  Aligned_cols=82  Identities=17%  Similarity=0.205  Sum_probs=67.6

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-C----CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-R----DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~----~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      +.+..+.+|+++.|.|.+.| |.|.+.|++++..+.. .    ++.+  .++  +|.|.+++.+|+|.|+|.|.|..|..
T Consensus       253 ~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~--~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~  327 (361)
T 2xot_A          253 ESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV--RNG--DLFFKKVQVEDGGVYTCYAMGETFNE  327 (361)
T ss_dssp             CCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE--ETT--EEEESSCCTTSCEEEEEEEECSSCEE
T ss_pred             ccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe--ecC--eEEEeecCcccCEEEEEEEecCCCcc
Confidence            34568999999999999999 9999999997654322 1    2333  555  79999999999999999999999999


Q ss_pred             EEEEEEEEeeCC
Q psy12421        139 ETNCVVIVESEE  150 (168)
Q Consensus       139 ~~~~~l~v~~~p  150 (168)
                      ...+.|.|...+
T Consensus       328 ~~~~~l~V~~~~  339 (361)
T 2xot_A          328 TLSVELKVYNFT  339 (361)
T ss_dssp             EEEEEEEEESSC
T ss_pred             EEEEEEEEEeee
Confidence            999999987644

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.26  E-value=2.7e-11  Score=94.17  Aligned_cols=110  Identities=14%  Similarity=0.251  Sum_probs=73.6

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCCCC-eEE-Ee-cC----CEEEEEEccCCCCCC
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKRD-YSM-SY-SD----GVVSMEIIDCKPEDS  124 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~-~~~-~~-~~----~~~~l~i~~~~~~d~  124 (168)
                      .+..+|.+  .+....+.+|+.+.|.|.+. |.|.|.+.|++++..+.... +.. .. ..    ....|.|.++..+|+
T Consensus       225 ~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Ds  302 (527)
T 3qs9_E          225 DLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDT  302 (527)
T ss_dssp             ESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGC
T ss_pred             EEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccC
Confidence            34444544  44567888999999999997 89999999999998765432 111 00 01    123599999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      |.|+|.|.|.   ....+.|.|..+|............+.+|+
T Consensus       303 G~Y~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~  342 (527)
T 3qs9_E          303 GYYTCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYE  342 (527)
T ss_dssp             EEEEEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTC
T ss_pred             eEEEEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCC
Confidence            9999999998   566777888766543222211223455554

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.25  E-value=3.4e-11  Score=84.98  Aligned_cols=80  Identities=19%  Similarity=0.216  Sum_probs=61.4

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCC-CeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCK  120 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~  120 (168)
                      +|.+...+....+.+|+++.|.|.+.+.+. +.+.|++.  +..+             ...++.........+|.|.+++
T Consensus       149 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  228 (256)
T 3juy_B          149 EIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSGSGTDFTLTITRVE  228 (256)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEccCCEEEEEECCCC
Confidence            567777888889999999999999998876 89999983  2211             1133444444555679999999


Q ss_pred             CCCCeEEEEEEEeCCc
Q psy12421        121 PEDSGEYKCVATNKHG  136 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g  136 (168)
                      .+|+|.|.|.|.|..+
T Consensus       229 ~~DsG~Y~C~~~~~~~  244 (256)
T 3juy_B          229 PEDFALYYCQVYGASS  244 (256)
T ss_dssp             GGGCSEEEEEECCSSC
T ss_pred             HhHCEEEEEEEeeCCC
Confidence            9999999999998543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.25  E-value=6.7e-12  Score=83.70  Aligned_cols=81  Identities=21%  Similarity=0.327  Sum_probs=62.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+|.+...+....+.+|+.+.|.|.+.+.+.+ .+.|++++..+...       ..  .|.|.+++..|+|.|+|.+.|.
T Consensus         3 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~-------~~--~L~i~~v~~~d~G~Y~C~~~~~   73 (176)
T 1f2q_A            3 QKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NS--SLNIVNAKFEDSGEYKCQHQQV   73 (176)
T ss_dssp             -CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------SS--EEEECSCCGGGCEEEEEECTTS
T ss_pred             CCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCC-------ce--EEEEeccceecCEEEEEEcCCc
Confidence            35777778888889999999999999888875 69999999877642       22  7999999999999999999987


Q ss_pred             CcceEEEEEEEEe
Q psy12421        135 HGTDETNCVVIVE  147 (168)
Q Consensus       135 ~g~~~~~~~l~v~  147 (168)
                      .++..  ..|.|.
T Consensus        74 ~~s~~--~~l~V~   84 (176)
T 1f2q_A           74 NESEP--VYLEVF   84 (176)
T ss_dssp             SCCCC--EEEEEE
T ss_pred             ccccc--EEEEEe
Confidence            66544  445554

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.25  E-value=2.6e-11  Score=85.57  Aligned_cols=95  Identities=16%  Similarity=0.148  Sum_probs=65.5

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeC--CEECC-------------CCCeEEEecCCEEEEEEccCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKG--NRELS-------------KRDYSMSYSDGVVSMEIIDCK  120 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~--~~~~~-------------~~~~~~~~~~~~~~l~i~~~~  120 (168)
                      +|.+...+....+.+|+++.|.|.+.+.+.+ .+.|+++  +..+.             ..++.........+|.|.+++
T Consensus       141 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~  220 (257)
T 3gkz_A          141 QIVLTQSPAIMSASPGEKVTLTCSASSSVSSSHLYWYQQKPGSSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISSME  220 (257)
T ss_dssp             CCCEECSCSEEEECTTCCEEEEEEESSCCCGGGEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             ceEEEcCCceEEEeCCCcEEEEEEEccCccceEEEEEEECCCCCcEEEEEEccccCCCcCCCEEEecCCCEEEEEECCCC
Confidence            4667667777889999999999999998887 9999984  22111             123333334455579999999


Q ss_pred             CCCCeEEEEEEEeCCcceEE-EEEEEEeeCCC
Q psy12421        121 PEDSGEYKCVATNKHGTDET-NCVVIVESEEE  151 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~  151 (168)
                      .+|+|.|.|.+.|....... ...|.|...+.
T Consensus       221 ~~D~G~Y~C~~~~~~~~~fg~gt~l~v~~~~~  252 (257)
T 3gkz_A          221 AEDAASYFCHQWSSFPFTFGSGTKLEIKRAPH  252 (257)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEECCC--
T ss_pred             hHHCEEEEEEEccCCceEEcCCEEEEEEeCCC
Confidence            99999999999875433222 23455654443

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.25  E-value=2.1e-11  Score=88.85  Aligned_cols=109  Identities=15%  Similarity=0.222  Sum_probs=74.3

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCEECC----------CCCeEEEec-----CCEEEEEEccCCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRELS----------KRDYSMSYS-----DGVVSMEIIDCKP  121 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~~~----------~~~~~~~~~-----~~~~~l~i~~~~~  121 (168)
                      ..|...+.+..+.+|+.+.|.|.+.+. |.+.+.|++++....          ..++.....     .....|.|.+++.
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            345566777889999999999999987 889999999875321          011111100     2233699999999


Q ss_pred             CCCeEEEEEEEeCCcceE-----EEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        122 EDSGEYKCVATNKHGTDE-----TNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~~-----~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      +|+|.|+|.+.|..+...     ....|.|...|..+... .+...+.+|+
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~-~~~~~~~~g~  133 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVS-GPAARATPQH  133 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEE-CCSSCBCTTC
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceee-ccccccCCCC
Confidence            999999999999876421     24577777766554322 2334555664

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.25  E-value=2.4e-11  Score=84.66  Aligned_cols=91  Identities=14%  Similarity=0.159  Sum_probs=66.9

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccC----CCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccC
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKP----PPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDC  119 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~  119 (168)
                      .+...+....+.+|+++.|.|.+.+.|    .+.+.|+++.  ..+             ...++.+....+..+|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v   82 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPV   82 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEecCCeEEEEEcCC
Confidence            345566678899999999999999988    7899999852  111             023444444455668999999


Q ss_pred             CCCCCeEEEEEEEeCCcc-eEEEEEEEEeeC
Q psy12421        120 KPEDSGEYKCVATNKHGT-DETNCVVIVESE  149 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~  149 (168)
                      +..|+|.|.|.+.|..+. ......|.|...
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  113 (240)
T 1moe_A           83 EADDVATYYCQQTNEDPYTFGGGTKLEIKGG  113 (240)
T ss_dssp             CGGGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             ChhhCEEEEEEEccCCceeecCCEEEEEecC
Confidence            999999999999998654 333456777654

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.24  E-value=3.1e-11  Score=81.88  Aligned_cols=112  Identities=11%  Similarity=0.146  Sum_probs=65.9

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccC---CCeEEeecCCeEEecCC-cEEEEEEEecc-CCCe
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVES---APNFTFLLRPRVMQVRQ-TCKLLCCLSGK-PPPT   88 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~p~~~~~~~~~~~~~g~-~~~l~C~~~g~-p~p~   88 (168)
                      ...|.+.+++..|.|.  |.+..   .+........+...+..   .|.+....  .....|. .+.|.|.+.|. |.|.
T Consensus        69 ~~sL~I~~v~~~D~G~--Y~C~~---~~~~~~~~~~~~L~V~~~~~~p~i~~~~--~~~~~g~~~v~L~C~~~g~~p~p~  141 (193)
T 2if7_A           69 SYSLQLSNLKMEDTGS--YRAQI---STKTSAKLSSYTLRILRQLRNIQVTNHS--QLFQNMTCELHLTCSVEDADDNVS  141 (193)
T ss_dssp             TCCEEECSCCGGGCEE--EEEEE---ECSSCEEEEEEEEEEECCCEEEEEEECC--C---CSSEEEEEEEEEESCCTTCE
T ss_pred             CeEEEECCCCcccCce--EEEEE---EecCCCeEEEEEEEEEccCCCCeEecCc--eeecCCCceEEEEEEEecCCCceE
Confidence            3557788888888666  43322   22211111111112222   23443322  2233465 89999999985 5899


Q ss_pred             eEEEeCCEECCCCCeEEEecCCEEEEEEccCCC-CCCeEEEEEEEeCCcceEEEE
Q psy12421         89 VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        89 i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      +.|++++..+..        +.  .|.|..... .|.|.|+|.|.|..|.....+
T Consensus       142 i~W~~~g~~l~~--------~~--~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~  186 (193)
T 2if7_A          142 FRWEALGNTLSS--------QP--NLTVSWDPRISSEQDYTCIAENAVSNLSFSV  186 (193)
T ss_dssp             EEEEETTEEEES--------SS--EEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred             EEEEeCCEEcCC--------CC--eEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence            999999876532        22  355543344 489999999999999875543

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.23  E-value=5.5e-11  Score=83.28  Aligned_cols=92  Identities=17%  Similarity=0.151  Sum_probs=65.3

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EE---C----------CCCCeEEEecCCEEEEEEccCCCCC
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RE---L----------SKRDYSMSYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~---~----------~~~~~~~~~~~~~~~l~i~~~~~~d  123 (168)
                      .+...+....+.+|+++.|.|.+.+.|.+.+.|+++.  ..   +          ...++......+..+|.|.+++.+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D   82 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETED   82 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecCCCEEEEEECCCChHH
Confidence            4556677788999999999999999999999999853  11   1          0234444334455689999999999


Q ss_pred             CeEEEEEEEeCCcce-EEEEEEEEeeCC
Q psy12421        124 SGEYKCVATNKHGTD-ETNCVVIVESEE  150 (168)
Q Consensus       124 ~G~Y~C~a~n~~g~~-~~~~~l~v~~~p  150 (168)
                      +|.|.|.+.|..+.. .....|.|..++
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~~~L~V~~~~  110 (242)
T 2znx_A           83 FGMYFCQQSNSXPYTFGGGTKLEITGGG  110 (242)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEEC---
T ss_pred             CEEEEEeEecCCceEECCCEEEEEcCCC
Confidence            999999999875432 223466776554

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.23  E-value=6.7e-12  Score=84.71  Aligned_cols=61  Identities=18%  Similarity=0.373  Sum_probs=51.3

Q ss_pred             EecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         69 MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      +.+|+++.|.|.+   |.|.+.|+|++..+.....    ..+  .|.|.++...|+|.|+|.|.|..|..
T Consensus       119 ~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~----~~~--~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          119 SRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA----TKN--TWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSSCEEEEECSS---SCSCEEEEETTEECCCSSC----CSS--CCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cCCCCeEEEEeeC---CCCeEEEEECCEECcccCC----Ccc--eEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            3489999999987   8899999999998864321    222  68999999999999999999998876

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.23  E-value=2.2e-11  Score=88.57  Aligned_cols=132  Identities=14%  Similarity=0.162  Sum_probs=84.2

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEe--ecCCeEEecC---CcEEEEEE-EeccCCCe
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTF--LLRPRVMQVR---QTCKLLCC-LSGKPPPT   88 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~--~~~~~~~~~g---~~~~l~C~-~~g~p~p~   88 (168)
                      ..|.+.+++..|.|.  |.|...  ..............+..+|.+..  ......+..|   +.+.|.|. ..+.|.|.
T Consensus        92 ~~L~I~~v~~~D~G~--Y~C~~~--~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~  167 (331)
T 3u83_A           92 GTIRLSRLELEDEGV--YICEFA--TFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSV  167 (331)
T ss_dssp             CCEEECSCCGGGCEE--EEEEEE--EETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCE
T ss_pred             ceEEEcccCcccCcE--EEEEEE--ecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCce
Confidence            457788888888665  433311  11111111222223444666533  4455678888   77999997 88999999


Q ss_pred             eEEEeCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCC
Q psy12421         89 VKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus        89 i~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      +.|++++..... .......++    ...|.|..+...|.|.|+|.|.|..|....++.|.|..+|.
T Consensus       168 i~W~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~  233 (331)
T 3u83_A          168 VSWETRLKGEAE-YQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPE  233 (331)
T ss_dssp             EEEEESSCCEEE-EEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEE
T ss_pred             EEEEcCCCCccc-cceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCe
Confidence            999995321110 001111111    12588888899999999999999999988888888876664

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.23  E-value=2.5e-11  Score=93.79  Aligned_cols=126  Identities=14%  Similarity=0.130  Sum_probs=82.8

Q ss_pred             CceeEEEEeCCCCCCCCCCccccee-----ccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCC--e
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVR-----RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP--T   88 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~   88 (168)
                      .|.+.+++..|.|.  |.|......     ......+.+. .....+|.+...+....+..|+.+.|.|.+.|.|++  .
T Consensus        71 ~L~I~~v~~~D~G~--Y~C~a~n~~g~~~~~~~~~~l~V~-~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~  147 (523)
T 2rcj_C           71 SLAISGLEAEDESD--YYCASWNSSDNSYVFGTGTKVTVL-GQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVT  147 (523)
T ss_pred             EEEECCCChhhCEE--EEEEEccCCCccccccCceEEEec-cCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceE
Confidence            47778888888776  433322111     0111222221 122457777766666677789999999999998765  8


Q ss_pred             eEEEeCCEECCCCCeEE---EecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         89 VKWYKGNRELSKRDYSM---SYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        89 i~W~~~~~~~~~~~~~~---~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      +.|++++..+.......   ...++    ...|.|.++...|+|.|+|.|.|..|.......+
T Consensus       148 v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  210 (523)
T 2rcj_C          148 VAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAP  210 (523)
T ss_pred             EEEecCCCCCCCceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceee
Confidence            99999998775432110   11122    1359999999999999999999998876655544

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.23  E-value=6e-11  Score=80.71  Aligned_cols=103  Identities=17%  Similarity=0.159  Sum_probs=70.1

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-------------------CCeEEEecCCEEEEEEccCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-------------------RDYSMSYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-------------------~~~~~~~~~~~~~l~i~~~~~~  122 (168)
                      ..+....+.+|+.+.|.|...+.+.+.+.|++++.....                   ........++  +|.|.+++..
T Consensus         4 i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~--~L~i~~v~~~   81 (208)
T 3r4d_A            4 IEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG--SLLFQMITMK   81 (208)
T ss_dssp             EEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTS--CEEECSCCGG
T ss_pred             ccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCC--eEEEcccccc
Confidence            344456788999999999988889999999987532211                   0011112233  6999999999


Q ss_pred             CCeEEEEEEEeCC-cceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        123 DSGEYKCVATNKH-GTDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       123 d~G~Y~C~a~n~~-g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      |+|.|.|.+.|.. +.......|.|..++..+.....+.. +.+|+
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~  126 (208)
T 3r4d_A           82 DMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELD  126 (208)
T ss_dssp             GCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTC
T ss_pred             CCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCC
Confidence            9999999999985 55667778888766544433222222 55554

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.23  E-value=1.3e-11  Score=85.99  Aligned_cols=77  Identities=19%  Similarity=0.321  Sum_probs=58.6

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-----EC----------CCCCeEEE--ecCCEEEEEEccCCC
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-----EL----------SKRDYSMS--YSDGVVSMEIIDCKP  121 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-----~~----------~~~~~~~~--~~~~~~~l~i~~~~~  121 (168)
                      .+...+....+.+|+++.|.|.+.+.|.|.+.|++++.     .+          ...++.+.  .......|.|.+++.
T Consensus       129 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~  208 (238)
T 2p1y_A          129 QVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQP  208 (238)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEETTCCG
T ss_pred             eEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEecCCCCeEEEEEcCCCH
Confidence            56666777789999999999999999999999999641     10          01233322  123345799999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy12421        122 EDSGEYKCVATNKH  135 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~  135 (168)
                      +|+|.|.|.|.|..
T Consensus       209 ~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          209 GDSATYFCAAIDTN  222 (238)
T ss_dssp             GGCEEEEEEEEETT
T ss_pred             HHCEEEEEEEeeCC
Confidence            99999999999984

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.23  E-value=1.4e-11  Score=85.09  Aligned_cols=125  Identities=14%  Similarity=0.163  Sum_probs=76.2

Q ss_pred             CceeEEEEeCCCCCCCCCCccccee-------ccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVR-------RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP   87 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p   87 (168)
                      .|.+.+++..|.+.  |.|......       ......+.+.. ....+|.+........+..|+.+.|.|.+.|. |.|
T Consensus        82 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p  158 (222)
T 1q9r_B           82 YLQMNTLRAEDSAT--YYCARDHDGYYERFSYWGQGTLVTVSA-AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP  158 (222)
T ss_dssp             EEEECSCCGGGCEE--EEEEECCCSSCCSCCCBCCCEEEEECS-SCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSC
T ss_pred             EEEECcCCcccCeE--EEEEEeccCCcccceEeCCceEEEecc-CCCCCCeEEEccccccccCCCcEEEEEEEccEECCC
Confidence            46677778788666  433322211       00112222221 12345666654433345679999999999985 888


Q ss_pred             -eeEEEeCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         88 -TVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        88 -~i~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                       .+.|++++..+..........++    ...|.|......| |.|+|.|.|..|.......|
T Consensus       159 ~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          159 VTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             CEEEEGGGTBCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             CEEEEecCCeEcceEeccccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence             99999998765321111111122    1258888888889 99999999999876554443

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.23  E-value=1.1e-11  Score=88.62  Aligned_cols=125  Identities=15%  Similarity=0.051  Sum_probs=80.3

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCe-EEeecCCeEEecCCcEEEEEEEeccCC--CeeEEE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPN-FTFLLRPRVMQVRQTCKLLCCLSGKPP--PTVKWY   92 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~   92 (168)
                      .+.+.+++..|.|.  |.|...   +............+..+|. +...+....+.+|+.+.|.|.+.+ |.  +.+.|+
T Consensus        52 ~L~i~~~~~~d~G~--Y~C~~~---n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~  125 (292)
T 4dkd_C           52 ILSTNNATFQNTGT--YRCTEP---GDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLV  125 (292)
T ss_dssp             EEEESSCCGGGCSC--EEECCC---C----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEE
T ss_pred             EEEEcccccccCEE--EEEEEc---cCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEE
Confidence            56677788888666  433322   2111112222223333444 455566778899999999999987 54  789999


Q ss_pred             eC-CEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE-EEEEEEee
Q psy12421         93 KG-NRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET-NCVVIVES  148 (168)
Q Consensus        93 ~~-~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~  148 (168)
                      ++ +..+...........+  .|.|.++...|+|.|+|.+.|..|.... .+.|.|..
T Consensus       126 ~~~~~~~~~~~~~~~~~~~--~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~  181 (292)
T 4dkd_C          126 RVRGRPLMRHTNYSFSPWH--GFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQK  181 (292)
T ss_dssp             EGGGCCCCSSCCEECCSSS--CCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEEC
T ss_pred             ecCCCccccCCcccccCCc--eEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeC
Confidence            97 4444332222222233  4899999999999999999998776543 77788876

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.23  E-value=3.2e-11  Score=82.15  Aligned_cols=91  Identities=18%  Similarity=0.346  Sum_probs=67.3

Q ss_pred             cCCeEEecCCcEEEEEEEeccC----CCeeEEEe----------------CCEECC------CCCeEEEe---cCCEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP----PPTVKWYK----------------GNRELS------KRDYSMSY---SDGVVSM  114 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~----------------~~~~~~------~~~~~~~~---~~~~~~l  114 (168)
                      +....+.+|+++.|.|.+.+.+    .+.+.|++                ++..+.      ..+..+..   ..+..+|
T Consensus         7 ~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   86 (214)
T 3jz7_A            7 EQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSGDASI   86 (214)
T ss_dssp             EEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGTBCCE
T ss_pred             CceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCCcccE
Confidence            3456788999999999998877    56999998                333332      11222211   1123369


Q ss_pred             EEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchh
Q psy12421        115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus       115 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      .|.+++..|+|.|.|.+.|..|.....+.|.|..+|..+.
T Consensus        87 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~  126 (214)
T 3jz7_A           87 NVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTR  126 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCE
T ss_pred             EEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCce
Confidence            9999999999999999999999888888999988766543

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.22  E-value=5.8e-11  Score=83.45  Aligned_cols=82  Identities=18%  Similarity=0.266  Sum_probs=67.2

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +|.|...+.+..+.+|+.+.|.|.+.+.|.+ .+.|++++..+...       ..  .|.|.++...|+|.|+|.+.|..
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~-------~~--~l~i~~~~~~d~G~Y~C~~~~~~   71 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTS-------TP--SYRITSASVNDSGEYRCQRGLSG   71 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCC-------SS--EEEESSCCGGGCEEEEEEESSSC
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeecc-------CC--eEEEecCCcccCeEEEEEEecCC
Confidence            4778888888899999999999999998888 99999999887643       22  68999999999999999999877


Q ss_pred             cceEEEEEEEEeeC
Q psy12421        136 GTDETNCVVIVESE  149 (168)
Q Consensus       136 g~~~~~~~l~v~~~  149 (168)
                      ++..  ..|.|...
T Consensus        72 ~s~~--~~l~v~~~   83 (262)
T 3rjd_A           72 RSDP--IQLEIHRG   83 (262)
T ss_dssp             CCCC--EEEEEECS
T ss_pred             cccc--EEEEEecc
Confidence            6543  44555443

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.22  E-value=5.2e-11  Score=83.53  Aligned_cols=91  Identities=18%  Similarity=0.162  Sum_probs=65.4

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-----EC----------CCCCeEEEecCCEEEEEEccCCCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-----EL----------SKRDYSMSYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-----~~----------~~~~~~~~~~~~~~~l~i~~~~~~  122 (168)
                      +.+...+....+.+|+++.|.|.+.+.|.+.+.|+++..     .+          ...++......+..+|.|.++..+
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   84 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSGTDYSLTISNLEQE   84 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCCCEEEEEEccCChh
Confidence            344555666788899999999999999999999998531     00          123444444555668999999999


Q ss_pred             CCeEEEEEEEeCCcceE-EEEEEEEee
Q psy12421        123 DSGEYKCVATNKHGTDE-TNCVVIVES  148 (168)
Q Consensus       123 d~G~Y~C~a~n~~g~~~-~~~~l~v~~  148 (168)
                      |+|.|.|.+.|..+... ....|.|..
T Consensus        85 D~G~Y~C~~~n~~~~~~~~~~~l~V~~  111 (250)
T 3esu_F           85 DIGTYFCQQGNTLPWTFGGGTKLEIRR  111 (250)
T ss_dssp             GCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             hCEEEEEEEeeCCCceECCCEEEEEEC
Confidence            99999999998765432 233566654

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.22  E-value=1.2e-11  Score=83.99  Aligned_cols=94  Identities=19%  Similarity=0.318  Sum_probs=70.6

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEEC------------C-CCCeEEEecCCEEEEEEccCCCCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL------------S-KRDYSMSYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~------------~-~~~~~~~~~~~~~~l~i~~~~~~d  123 (168)
                      ++.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+            . ..+...  ...  .|.|.++...|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~--~L~i~~~~~~d   79 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF--LPT--GITFKSVTRED   79 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE--ETT--EEECSCCCTTS
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe--ecc--EEEEeeCCHHH
Confidence            456666777788999999999999999999999999976431            1 112222  223  79999999999


Q ss_pred             CeEEEEEEEeCCcc--eEEEEEEEEeeCCCchh
Q psy12421        124 SGEYKCVATNKHGT--DETNCVVIVESEEESKE  154 (168)
Q Consensus       124 ~G~Y~C~a~n~~g~--~~~~~~l~v~~~p~~~~  154 (168)
                      +|.|+|.+.|..|.  ....+.|.|..+|..+.
T Consensus        80 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~  112 (209)
T 1nbq_A           80 TGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPT  112 (209)
T ss_dssp             CSEEEEEEEETTSSCEECCEEECCEEBCCCCCC
T ss_pred             CcEEEEEEecCCCCccceEEEEEEEecCCcCCC
Confidence            99999999998663  34566777777665543

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.22  E-value=3.9e-12  Score=87.12  Aligned_cols=122  Identities=16%  Similarity=0.193  Sum_probs=75.3

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcc----eeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-ee
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPL----QITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-TV   89 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~i   89 (168)
                      .|.+.+++..|.|.  |.|.   +.+....    ...+.......+|.+...........|+.+.|.|.+.| .|.+ .+
T Consensus        72 ~L~I~~v~~~D~G~--Y~C~---~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v  146 (213)
T 3d9a_L           72 TLSINSVETEDFGM--YFCQ---QSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINV  146 (213)
T ss_dssp             EEEESSCCGGGCEE--EEEE---ECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEECCCChhhCEE--EEEe---eecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEE
Confidence            45566777777655  4322   2222111    11111112234677766554444447899999999988 5665 89


Q ss_pred             EEEeCCEECCCC-CeEE--E-ecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         90 KWYKGNRELSKR-DYSM--S-YSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        90 ~W~~~~~~~~~~-~~~~--~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      .|++++..+... ....  . ..++    ...|.|.++...|.|.|+|.|.|.........
T Consensus       147 ~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3d9a_L          147 KWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK  207 (213)
T ss_dssp             EEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEE
T ss_pred             EEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEE
Confidence            999999887654 1110  0 0111    23799999999999999999999876643333

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=99.21  E-value=4e-11  Score=75.23  Aligned_cols=89  Identities=17%  Similarity=0.279  Sum_probs=62.6

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCC----CeeEEEeCC-------EEC-------------C--CCCeEEEec---CC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPP----PTVKWYKGN-------REL-------------S--KRDYSMSYS---DG  110 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~----p~i~W~~~~-------~~~-------------~--~~~~~~~~~---~~  110 (168)
                      +...+....+.+|+++.|.|.+.+.+.    +.+.|++++       ..+             .  ..+..+...   .+
T Consensus         8 v~~~~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   87 (126)
T 1eaj_A            8 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSG   87 (126)
T ss_dssp             ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGT
T ss_pred             EECCCceEEEEeCCCEEEEEEEecCCCCCCceEEEEEEeCCCcCCCceEEEEEeCCeeccccCccccCeeEEEcccccCC
Confidence            333444567889999999999987654    359999864       111             0  112222111   12


Q ss_pred             EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       111 ~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      ..+|.|.+++.+|+|.|.|.+.|..|.....+.|.|..
T Consensus        88 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~~  125 (126)
T 1eaj_A           88 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV  125 (126)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             eEEEEECcCChHHCeEEEEEEEcCCccCCcEEEEEEEc
Confidence            24799999999999999999999988878888888764

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.21  E-value=6.3e-11  Score=84.89  Aligned_cols=91  Identities=14%  Similarity=0.170  Sum_probs=65.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe--CCEECC-------------CCCeEEEecCCEEEEEEccCCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK--GNRELS-------------KRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~--~~~~~~-------------~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      ++.+...+....+.+|++++|.|.+.+.| +.+.|+|  ++..+.             ..++.........+|.|.+++.
T Consensus       162 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  240 (282)
T 1qok_A          162 ENVLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSGSGTSYSLTISRMEA  240 (282)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEecCCCEEEEEEccCCh
Confidence            45566667777899999999999999988 9999999  454331             2334433344556799999999


Q ss_pred             CCCeEEEEEEEeCCcce-EEEEEEEEee
Q psy12421        122 EDSGEYKCVATNKHGTD-ETNCVVIVES  148 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  148 (168)
                      +|+|.|.|.+.|..+.. .....|.|..
T Consensus       241 ~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          241 EDAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             hHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence            99999999998854322 2234566653

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.21  E-value=9.3e-11  Score=80.40  Aligned_cols=89  Identities=21%  Similarity=0.295  Sum_probs=63.7

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCC--EEC---------------C--CCCeEEEecCCEEEEEEcc
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGN--REL---------------S--KRDYSMSYSDGVVSMEIID  118 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~--~~~---------------~--~~~~~~~~~~~~~~l~i~~  118 (168)
                      .+...+ ...+.+|+++.|.|.+.+. |.+.+.|++..  ...               .  ..++.+....+..+|.|.+
T Consensus         3 ~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   81 (218)
T 3s96_B            3 VLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISN   81 (218)
T ss_dssp             SEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEEETTEEEEEESS
T ss_pred             eEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEecCCceEEEEEcc
Confidence            344444 6778899999999999998 89999999832  100               0  1233333344556799999


Q ss_pred             CCCCCCeEEEEEEEeCCc-----ceEEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHG-----TDETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|..|     .......|.|..
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  116 (218)
T 3s96_B           82 IQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLG  116 (218)
T ss_dssp             CCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEES
T ss_pred             CCcccCEEEEEEEecCCCCceeEEEcCcEEEEEec
Confidence            999999999999999876     223345666664

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.21  E-value=1.5e-10  Score=72.75  Aligned_cols=90  Identities=22%  Similarity=0.251  Sum_probs=62.5

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EE---C----------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RE---L----------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~---~----------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +...+....+.+|++++|.|.+.+.+.+.+.||++.  ..   +          ...++.+....+..+|.|.+++.+|+
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~Ds   83 (120)
T 1mqk_L            4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (120)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEeccCCEEEEEECCCCHHHC
Confidence            345566778899999999999998888899999853  11   1          02344444344556899999999999


Q ss_pred             eEEEEEEEeCC-cc-eEEEEEEEEeeC
Q psy12421        125 GEYKCVATNKH-GT-DETNCVVIVESE  149 (168)
Q Consensus       125 G~Y~C~a~n~~-g~-~~~~~~l~v~~~  149 (168)
                      |.|.|.+.|.. .. ......|.|...
T Consensus        84 G~Y~C~~~~~~~~~~fg~gt~L~V~~~  110 (120)
T 1mqk_L           84 GSYYCQHHYGTPPLTFGGGTKLEIKRE  110 (120)
T ss_dssp             EEEEEEECSSSSSCCBCCCEEEEEC--
T ss_pred             EEEEEEEEeCCCceEECCCeEEEEecC
Confidence            99999998753 11 122345666543

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.21  E-value=5.9e-11  Score=83.16  Aligned_cols=91  Identities=16%  Similarity=0.207  Sum_probs=64.7

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccC-----CCeeEEEeCC--E--E-C----------CCCCeEEEecCCEEEEEEcc
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKP-----PPTVKWYKGN--R--E-L----------SKRDYSMSYSDGVVSMEIID  118 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p-----~p~i~W~~~~--~--~-~----------~~~~~~~~~~~~~~~l~i~~  118 (168)
                      .+...+....+.+|+++.|.|.+.+.|     .+.+.|+++.  .  . +          ...++......+..+|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   82 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISR   82 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccCCCEEEEEECC
Confidence            345566778899999999999999887     6899999842  1  1 1          02344444445566899999


Q ss_pred             CCCCCCeEEEEEEEeCCcce-EEEEEEEEeeC
Q psy12421        119 CKPEDSGEYKCVATNKHGTD-ETNCVVIVESE  149 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~  149 (168)
                      ++.+|+|.|.|.+.|..+.. .....|.|...
T Consensus        83 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  114 (247)
T 1svz_A           83 VEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGG  114 (247)
T ss_dssp             CCGGGCEEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             CCHHHCEEEEEEEccCCccEECCCEEEEEECC
Confidence            99999999999999986542 22356666654

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.21  E-value=1.5e-10  Score=71.49  Aligned_cols=77  Identities=21%  Similarity=0.287  Sum_probs=58.7

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--E---EC----------CCCCeEEEecCCEEEEEEccCCCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--R---EL----------SKRDYSMSYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~l~i~~~~~~  122 (168)
                      +.+...+....+.+|+++.|.|.+.+.+.+.+.|+++.  .   .+          ...++......+..+|.|.+++.+
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   83 (109)
T 2q20_A            4 IQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSGSGTDFTFTISSLQPE   83 (109)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ccEEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEeccCCEEEEEECCCChh
Confidence            44555667788999999999999998888899999863  1   11          023444443445568999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12421        123 DSGEYKCVATNK  134 (168)
Q Consensus       123 d~G~Y~C~a~n~  134 (168)
                      |+|.|.|.+.|.
T Consensus        84 DsG~Y~C~~~~~   95 (109)
T 2q20_A           84 DIATYYCQQYDN   95 (109)
T ss_dssp             GCEEEEEEECSS
T ss_pred             hCEEEEEEEeeC
Confidence            999999999874

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.21  E-value=6.9e-11  Score=82.80  Aligned_cols=124  Identities=18%  Similarity=0.205  Sum_probs=71.6

Q ss_pred             ceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-eeEEEeC
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-TVKWYKG   94 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~i~W~~~   94 (168)
                      |.+.+++..|.|.  |.|.   +.+............+..+|.+...+. .....|..+.|.|.+.| .|.| .+.|+++
T Consensus        84 L~I~~v~~~D~G~--Y~C~---~~~~~~~~~~~~~L~V~~~P~v~~~~~-~~~~~~~~~~L~C~~~g~~P~pi~v~W~k~  157 (248)
T 3pv7_A           84 LRLPGIQLEEAGE--YRCE---VVVTPLKAQGTVQLEVVASPASRLLLD-QVGMKENEDKYMCESSGFYPEAINITWEKQ  157 (248)
T ss_dssp             EEESSCCGGGCEE--EEEE---EEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSCCEEEEEEE
T ss_pred             EEeCCCCHHHCeE--EEEE---EEeCCccceeEEEEEEecCCceEEecC-CccccCCCcEEEEEEccEECCCeEEEEEEC
Confidence            7788888888776  4332   333222222233334455788776554 33445777889999998 8988 9999999


Q ss_pred             CEECCCC------C---eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcce--EEEEEEEE
Q psy12421         95 NRELSKR------D---YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD--ETNCVVIV  146 (168)
Q Consensus        95 ~~~~~~~------~---~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v  146 (168)
                      +..+...      .   ......++    ...|.+......|.|.|+|.|.|..+..  ...+.|.|
T Consensus       158 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          158 TQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEECC--
T ss_pred             CccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEEEEEE
Confidence            8643211      0   01111111    2357788888899999999999998874  44555666

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.21  E-value=1.9e-11  Score=90.34  Aligned_cols=84  Identities=11%  Similarity=0.069  Sum_probs=65.1

Q ss_pred             CCeEEecCCcEEEEEEEec-----cCCCeeEEEeCCEECCCC---------CeEEEe----------cCCEEEEEEccCC
Q psy12421         65 RPRVMQVRQTCKLLCCLSG-----KPPPTVKWYKGNRELSKR---------DYSMSY----------SDGVVSMEIIDCK  120 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g-----~p~p~i~W~~~~~~~~~~---------~~~~~~----------~~~~~~l~i~~~~  120 (168)
                      ....+.+|+.+.|.|.+.+     .|.|.+.|++++..+...         .+.+..          .++...|.|.++.
T Consensus       184 ~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~  263 (363)
T 1wio_A          184 SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQAL  263 (363)
T ss_dssp             EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBC
T ss_pred             CceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCC
Confidence            3456788999999998877     788999999999876542         222211          2223379999999


Q ss_pred             CCCCeEEEEEEEeC--CcceEEEEEEEEee
Q psy12421        121 PEDSGEYKCVATNK--HGTDETNCVVIVES  148 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~  148 (168)
                      ..|+|.|+|.|.|.  .|.....+.|.|..
T Consensus       264 ~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~  293 (363)
T 1wio_A          264 PQYAGSGNLTLALEAKTGKLHQEVNLVVMR  293 (363)
T ss_dssp             GGGCEEEEEEECBTTTTCCEEEEEEEEEEE
T ss_pred             cCcCcEEEEEEEEhhhcCeEEEEEeEEEEE
Confidence            99999999999999  99888888877753

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.20  E-value=8.9e-11  Score=80.23  Aligned_cols=85  Identities=13%  Similarity=0.169  Sum_probs=63.2

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +....+.+|+++.|.|.+.+.|.+.+.|+++.  ..+             ...++......+...|.|.+++.+|+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   86 (210)
T 1lk3_L            7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (210)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEecCCEEEEEECCCCHHHCeEEE
Confidence            56678899999999999999998999999842  211             013444444455668999999999999999


Q ss_pred             EEEEeCCcceEE-EEEEEEee
Q psy12421        129 CVATNKHGTDET-NCVVIVES  148 (168)
Q Consensus       129 C~a~n~~g~~~~-~~~l~v~~  148 (168)
                      |.+.|..+.... ...|.|..
T Consensus        87 C~~~~~~~~~~~~~~~l~V~~  107 (210)
T 1lk3_L           87 CQQSWNGPLTFGAGTKLELKR  107 (210)
T ss_dssp             EEECSSSSCEECCCEEEEECC
T ss_pred             EEEEcCCCceeCCCEEEEEcC
Confidence            999998765322 33566654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.20  E-value=1.4e-10  Score=79.33  Aligned_cols=89  Identities=17%  Similarity=0.173  Sum_probs=65.5

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~  122 (168)
                      |.+...+....+.+|+++.|.|.+.+.|.+.+.|++..  ...             ...++......+..+|.|.+++.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~   81 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGSGRDSSFTISSLESE   81 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEeccCCEEEEEECCCCcc
Confidence            45556677788999999999999999999999999832  100             123444444556668999999999


Q ss_pred             CCeEEEEEEEeCCcce-EEEEEEEE
Q psy12421        123 DSGEYKCVATNKHGTD-ETNCVVIV  146 (168)
Q Consensus       123 d~G~Y~C~a~n~~g~~-~~~~~l~v  146 (168)
                      |+|.|.|.+.|..+.. .....|.|
T Consensus        82 D~G~Y~C~~~~~~~~~~~~~~~l~V  106 (213)
T 3r06_A           82 DIGSYYCQQYYNYPWTFGPGTKLEI  106 (213)
T ss_dssp             GCSEEEEEECSSSSCEECCCEEEEE
T ss_pred             cCEEEEEecccCCceEEcCCceEEE
Confidence            9999999999876532 23345565

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.20  E-value=1.7e-11  Score=87.75  Aligned_cols=122  Identities=11%  Similarity=0.065  Sum_probs=81.3

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC-CeeEEE-
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWY-   92 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~-   92 (168)
                      ..+.+.++...|.|.  |.|....   ..   .......+..+|.+...+....+.+|+.+.|.|.+.+ |. +.+.|+ 
T Consensus        57 ~~L~i~~~~~~d~G~--Y~C~~~n---g~---~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~  127 (290)
T 2o26_X           57 NEWIQEKAEATRTGT--YTCSNSN---GL---TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIE  127 (290)
T ss_dssp             SEEEETTCCGGGCEE--EEEEESS---SC---EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEE
T ss_pred             ceEEEeccCHHhCeE--EEEEeeC---Cc---cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEe
Confidence            456666777777665  4333222   11   1111223334555445666788889999999999986 77 999995 


Q ss_pred             eCCEECCCCCeEEEecCCEEEEEEccCCCCCCe-EEEEEEEeCCcceEE-EEEEEEe
Q psy12421         93 KGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKHGTDET-NCVVIVE  147 (168)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~g~~~~-~~~l~v~  147 (168)
                      +++..+...........+  .|.|.++...|+| .|+|.|.|..|.... .+.|.|.
T Consensus       128 ~~g~~l~~~~~~~~~~~~--~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~  182 (290)
T 2o26_X          128 CDGKSLPTDLTFVPNPKA--GITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVR  182 (290)
T ss_dssp             TTSCCCCTTCEEEEETTT--EEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCCcCCCCCCceeeCCCC--CEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEE
Confidence            677776554333333344  7999999999999 999999998655332 4677766

>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein, GPI-anchor, immunoglobulin DOMA lipoprotein, membrane; 1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A

Probab=99.20  E-value=1.7e-10  Score=71.63  Aligned_cols=84  Identities=19%  Similarity=0.172  Sum_probs=59.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECC-------------------CCCeEEEecCCEEEEEEccCCCCC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-------------------KRDYSMSYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-------------------~~~~~~~~~~~~~~l~i~~~~~~d  123 (168)
                      .+....+.+|+++.|.|.....+.+.+.|+|......                   ...+.....++  +|.|.+++.+|
T Consensus         6 ~~~p~~~~~G~~v~L~~~~~p~~~~~i~W~kg~~~~~~~~I~~y~~~~~~~~~~~~~~gR~~~~~ng--SL~I~nvt~~D   83 (111)
T 2qsq_A            6 ESTPFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA--SLLIQNIIQND   83 (111)
T ss_dssp             EEESSEEETTSCEEEEEESCCSSEEEEEEEESSSCCGGGEEEEEETTTTEEEECTTCCSCEEECTTS--CEEECSCCGGG
T ss_pred             EeccceeccCCCEEEEEeCCCCCceEEEEEeCCCCCCCcEEEEEECCCcceecCcccCCcEEEecCC--cEEEccCcccC
Confidence            3344578899999999984333445799999753210                   11223334556  79999999999


Q ss_pred             CeEEEEEEEeCCcc-eEEEEEEEEee
Q psy12421        124 SGEYKCVATNKHGT-DETNCVVIVES  148 (168)
Q Consensus       124 ~G~Y~C~a~n~~g~-~~~~~~l~v~~  148 (168)
                      +|.|+|.+.+..+. ......|.|..
T Consensus        84 ~G~Ytc~v~~~~~~~~~~~~~L~V~~  109 (111)
T 2qsq_A           84 AGFYTLHVIKSDLVNEEATGQFRVYP  109 (111)
T ss_dssp             CEEEEEEEEETTSCCEEEEEEEEEEC
T ss_pred             CeEEEEEEEeCCCcEEEEEEEEEEec
Confidence            99999999998764 57777887764

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.19  E-value=9.7e-12  Score=72.71  Aligned_cols=60  Identities=28%  Similarity=0.515  Sum_probs=49.2

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccC-CCCCCeEEEEEEEe
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDC-KPEDSGEYKCVATN  133 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~-~~~d~G~Y~C~a~n  133 (168)
                      ++..++..|++++|.|.+.|.|.  +.|+|++..+...      .++  .|.|.++ ..+|+|.|+|.|.+
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~------~~~--~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQK------HDK--HLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTC------CSS--CCBCCSCCTTTTCSCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCC------CCC--EEEECccCccCcCEEEEEEEcc
Confidence            44567778999999999999874  9999999988653      223  6899996 78999999999865

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.19  E-value=1.4e-10  Score=83.48  Aligned_cols=86  Identities=14%  Similarity=0.230  Sum_probs=65.4

Q ss_pred             CCeEEeecC-CeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCCC-CeEEEec--CCEEEEEEccCCCCCCeEEEEEE
Q psy12421         57 APNFTFLLR-PRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKR-DYSMSYS--DGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        57 ~p~~~~~~~-~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~-~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      +|.+...+. ...+.+|+.+.|.|.+. +.|.+.+.|++++..+... ++.+...  .+...|.|.++...|+|.|+|.+
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  185 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQL  185 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTTEEEEEESCCCGGGCEEEEEEE
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCCEEEEEEccCCcccCEeEEEEE
Confidence            555544333 67888999999999999 8999999999999988653 3333322  55667999999999999999999


Q ss_pred             EeCCcceEEEE
Q psy12421        132 TNKHGTDETNC  142 (168)
Q Consensus       132 ~n~~g~~~~~~  142 (168)
                      .|..+......
T Consensus       186 ~~~~~~~~~~~  196 (312)
T 2y23_A          186 QDGKATNHSTV  196 (312)
T ss_dssp             ESSSCEEEEEE
T ss_pred             EeCCceEEEEE
Confidence            87655444333

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.19  E-value=2.6e-11  Score=82.95  Aligned_cols=85  Identities=16%  Similarity=0.255  Sum_probs=59.5

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCC--eeEEEeCCEECCCCCe---EEEecCC----EEEEEEccCCCCCCeE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDY---SMSYSDG----VVSMEIIDCKPEDSGE  126 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~---~~~~~~~----~~~l~i~~~~~~d~G~  126 (168)
                      .+|.+...........|+.+.|.|.+.|.+++  .+.|++++..+.....   .....++    ...|.|......|.|.
T Consensus       114 ~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~  193 (212)
T 1q0x_L          114 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS  193 (212)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCc
Confidence            56777665544444568899999999986543  8999999988754321   1111222    2358888888899999


Q ss_pred             EEEEEEeCCcceEE
Q psy12421        127 YKCVATNKHGTDET  140 (168)
Q Consensus       127 Y~C~a~n~~g~~~~  140 (168)
                      |+|.|.|.......
T Consensus       194 Y~C~a~n~~~~~~~  207 (212)
T 1q0x_L          194 YSCQVTHEGHSSNK  207 (212)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEEEeCCcceee
Confidence            99999998765443

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.19  E-value=6.9e-11  Score=84.40  Aligned_cols=93  Identities=19%  Similarity=0.215  Sum_probs=67.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-----EC----------CCCCeEEEecCCEEEEEEccCCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-----EL----------SKRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-----~~----------~~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      .+.+...+....+.+|+++.|.|.+.+.|.+.+.|++++.     .+          ...++......+...|.|.+++.
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~   91 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP   91 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEeccCCeEEEEEccCCh
Confidence            4566677777889999999999999999999999998541     11          02344444445566899999999


Q ss_pred             CCCeEEEEEEEeCCcc-eEEEEEEEEeeC
Q psy12421        122 EDSGEYKCVATNKHGT-DETNCVVIVESE  149 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~-~~~~~~l~v~~~  149 (168)
                      +|+|.|.|.+.|..+. ......|.|...
T Consensus        92 ~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~  120 (276)
T 3auv_A           92 EDFATYYCQQHYTTPPTFGCGTKVEIKGG  120 (276)
T ss_dssp             GGCEEEEEEECSSSSCCCCCCEEEEC---
T ss_pred             hhCEEEEEEEecCCcccccCCEEEEEecC
Confidence            9999999999997554 222345666554

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=99.19  E-value=3.6e-10  Score=70.68  Aligned_cols=88  Identities=18%  Similarity=0.228  Sum_probs=62.5

Q ss_pred             ecCCeEEecCCcEEEEEEEec--cCCCeeEEEeCCEECC--------------CCCeEEEecCCEEEEEEccCCCCCCeE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSG--KPPPTVKWYKGNRELS--------------KRDYSMSYSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g--~p~p~i~W~~~~~~~~--------------~~~~~~~~~~~~~~l~i~~~~~~d~G~  126 (168)
                      .+....+.+|+++.|.|...+  .+...+.|++++..+.              ..+..+ ..+.  +|.|.+++.+|+|.
T Consensus         9 ~~~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~i~~~~~~~~~~~~~~~~~R~~~-~~~~--sL~I~~v~~~D~G~   85 (117)
T 3q0h_A            9 TTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP-GPGL--GLTLQSLTVNDTGE   85 (117)
T ss_dssp             ESCCEEEETTCCEEECEEEESCCCEEEEEEEEETTEEEEEEETTTEEECCGGGTTTEEE-CSTT--CEEECSCCGGGCEE
T ss_pred             ccCCEEEecCCCEEEEEEecCCCCCEEEEEEEeCCEEEEEEECCCCceeCccccCcEEe-CCce--EEEEeeCChhhCEE
Confidence            455678889999999999887  3345789999865321              112221 1223  69999999999999


Q ss_pred             EEEEEEe-CCcceEEEEEEEEeeCCCch
Q psy12421        127 YKCVATN-KHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       127 Y~C~a~n-~~g~~~~~~~l~v~~~p~~~  153 (168)
                      |.|.+.+ ..|.......|.|..+|...
T Consensus        86 Y~C~v~~~~~g~~~~~~~L~V~~pp~~~  113 (117)
T 3q0h_A           86 YFCIYHTYPDGTYTGRIFLEVLESSVAE  113 (117)
T ss_dssp             EEEEEEEETTCCEEEEEEEEEECC----
T ss_pred             EEEEEEECCCCCeEEEEEEEEEccCccc
Confidence            9998754 57888888999998876544

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.19  E-value=2.8e-10  Score=77.51  Aligned_cols=79  Identities=10%  Similarity=0.151  Sum_probs=64.4

Q ss_pred             EecCCcEEEEEEEecc-CCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         69 MQVRQTCKLLCCLSGK-PPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      ...++.+.|.|.+.+. |.+.+.|++++..+.. .++.+...++...|.|.++...|+|.|+|.+.|..|.....+.|.+
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~v   93 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG   93 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEEETTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEEeCCEEEEEECCCCcccCEEEEEEEecCCcceEEEEEEEE
Confidence            4467888999998884 5899999999998876 4455555666667999999999999999999999888877777755


Q ss_pred             e
Q psy12421        147 E  147 (168)
Q Consensus       147 ~  147 (168)
                      .
T Consensus        94 ~   94 (212)
T 2r15_A           94 Q   94 (212)
T ss_dssp             H
T ss_pred             e
Confidence            4

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.19  E-value=5.4e-11  Score=78.55  Aligned_cols=82  Identities=16%  Similarity=0.258  Sum_probs=63.5

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccC-CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +|.+...+....+.+|+.+.|.|.+.+.| .+.+.|++++..+....       .  .+.+.++...|+|.|+|.+.|..
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~-------~--~~~~~~~~~~d~G~Y~C~~~~~~   74 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHT-------Q--PSYRFKANNNDSGEYTCQTGQTS   74 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCC-------S--SEEEEECCGGGCEEEEEEETTSB
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCc-------c--ceEEEecccccCeEEEEEEeCCC
Confidence            45666777777899999999999999887 67999999998876532       1  35677899999999999999765


Q ss_pred             cceEEEEEEEEeeC
Q psy12421        136 GTDETNCVVIVESE  149 (168)
Q Consensus       136 g~~~~~~~l~v~~~  149 (168)
                      +..  .+.|.|...
T Consensus        75 ~s~--~~~l~v~~~   86 (170)
T 3ry4_A           75 LSD--PVHLTVLFE   86 (170)
T ss_dssp             CCC--CEEEEEECC
T ss_pred             ceE--eEEEEEECC
Confidence            443  455666554

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.19  E-value=3.6e-11  Score=82.27  Aligned_cols=117  Identities=16%  Similarity=0.264  Sum_probs=70.4

Q ss_pred             CceeEEEEeCCCCCCCCCCccccee-c-----cCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc----C
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVR-R-----REPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK----P   85 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~----p   85 (168)
                      .|.+.+++..|.+.  |.|...... .     ...+.+.+.  ....+|.+.. +.  .+.+|+.+.|.|.+.+.    |
T Consensus        83 sL~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~~l~V~--~~~~~p~i~~-~~--~~~~G~~v~L~C~~~~~~~~~p  155 (214)
T 2zg1_A           83 SLSIGDARMEDTGS--YFFRVERGRDVKYSYQQNKLNLEVT--ALIEKPDIHF-LE--PLESGRPTRLSCSLPGSCEAGP  155 (214)
T ss_dssp             CEEECSCCGGGCEE--EEEEEEETTTEEEECCSSCEEEEEE--CCCCCCEEC---C--CCCTTCCEEEEEECTTCCSCSS
T ss_pred             EEEEccCCHhhCce--EEEEEEcCCCceeeecCCceEEEEe--cCCCCCceec-Cc--cccCCCeEEEEEEeccCCCCCC
Confidence            47788888888666  433322111 0     012223322  2223566543 22  25689999999999774    8


Q ss_pred             CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         86 PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        86 ~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      .|.+.|++++..+.....   ...+  .|.|..+...|.|.|+|.|.|..+.......+
T Consensus       156 ~p~v~W~~~~~~~~~~~~---~~~~--~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v  209 (214)
T 2zg1_A          156 PLTFSWTGNALSPLDPET---TRSS--ELTLTPRPEDHGTNLTCQMKRQGAQVTTERTV  209 (214)
T ss_dssp             CCEEEEESSTTSSSCSSC---CCSS--EEEECCCTTCCSCEEEEEEECC----CCEEEE
T ss_pred             CceEEEeCCCCccCCCCc---eeEE--EEEEecccHHcCcEEEEEEEeCCCCcceEEEE
Confidence            899999999864432221   1223  78999999999999999999986554333333

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.18  E-value=4.1e-11  Score=83.73  Aligned_cols=87  Identities=18%  Similarity=0.296  Sum_probs=63.2

Q ss_pred             ecCCeEEecCCcEEEEEEEec---cCCCeeEEEeCCEECC-------------------------------CCCeEEEec
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSG---KPPPTVKWYKGNRELS-------------------------------KRDYSMSYS  108 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g---~p~p~i~W~~~~~~~~-------------------------------~~~~~~~~~  108 (168)
                      .+....+.+|+++.|.|.+.+   .|.+.+.|++++....                               ..+.. ...
T Consensus         8 ~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~-~~~   86 (250)
T 2fbo_J            8 THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRAS-VAN   86 (250)
T ss_dssp             SCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEE-CSC
T ss_pred             CCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEE-ecc
Confidence            344577889999999999988   8899999999874320                               01111 111


Q ss_pred             CCEEEEEEccCCCCCCeEEEEEEEeCCcce-----EEEEEEEEeeCC
Q psy12421        109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTD-----ETNCVVIVESEE  150 (168)
Q Consensus       109 ~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~p  150 (168)
                      .+...|.|.+++.+|+|.|.|.+.|..+..     ...+.|.|..++
T Consensus        87 ~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~  133 (250)
T 2fbo_J           87 LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHT  133 (250)
T ss_dssp             TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTS
T ss_pred             CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccC
Confidence            122369999999999999999999987653     457788887653

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.18  E-value=9.1e-11  Score=83.37  Aligned_cols=94  Identities=15%  Similarity=0.140  Sum_probs=67.8

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccC------CCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKP------PPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSME  115 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p------~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~  115 (168)
                      .+.+...+....+.+|+++.|.|.+.+.+      .+.+.|+++.  ..+             ...++......+...|.
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~   84 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGSGTDFTLT   84 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecCCCEEEEE
Confidence            45666777788899999999999998887      6889999852  211             02344444444556899


Q ss_pred             EccCCCCCCeEEEEEEEeCCcce-EEEEEEEEeeCC
Q psy12421        116 IIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVESEE  150 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~p  150 (168)
                      |.+++.+|+|.|.|.+.|..+.. .....|.|...+
T Consensus        85 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~  120 (264)
T 2gjj_A           85 IGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGG  120 (264)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-
T ss_pred             ECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCC
Confidence            99999999999999999875432 223467776553

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.18  E-value=1.1e-10  Score=82.00  Aligned_cols=92  Identities=16%  Similarity=0.168  Sum_probs=67.5

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccC-----CCeeEEEeCC--EEC-----------C--CCCeEEEecCCEEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKP-----PPTVKWYKGN--REL-----------S--KRDYSMSYSDGVVSMEI  116 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-----~p~i~W~~~~--~~~-----------~--~~~~~~~~~~~~~~l~i  116 (168)
                      ++.+...+....+.+|+++.|.|.+.+.|     .+.+.|+++.  ..+           .  ..++......+...|.|
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I  117 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGSGTDFTLKI  117 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEE
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecCCCEEEEEE
Confidence            67777778888999999999999999987     4899999743  211           1  13444444556668999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcceEE-EEEEEEee
Q psy12421        117 IDCKPEDSGEYKCVATNKHGTDET-NCVVIVES  148 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~  148 (168)
                      .+++..|+|.|.|.+.|..+.... ...|.|..
T Consensus       118 ~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~  150 (254)
T 2c1o_A          118 SRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKR  150 (254)
T ss_dssp             SSCCGGGCSEEEEEECSSSSCEEBCCEEEEECC
T ss_pred             CcCCcccCEEEEEEEEcCcceEecCCEEEEECC
Confidence            999999999999999998654321 23455543

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.18  E-value=1.9e-11  Score=88.75  Aligned_cols=110  Identities=15%  Similarity=0.189  Sum_probs=73.4

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      ..-.+|.|...+. ..+.+|+.+.|.|.+.+. .+.+.|+|++..+..... .....+  .|.|.+++..|+|.|+|.|.
T Consensus        20 ~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~-~~~~~~--~L~I~~v~~~D~G~Y~C~a~   94 (316)
T 3vh8_G           20 GGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFH-GRIFQE--SFNMSPVTTAHAGNYTCRGS   94 (316)
T ss_dssp             ----CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHH-HCCBSS--CEEECSCCGGGCEEEEEEEB
T ss_pred             CCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeec-CCcceE--EEEECCCCcccCeEEEEEEE
Confidence            4456788887776 678899999999999887 789999999876543110 011223  69999999999999999998


Q ss_pred             eCC-----cceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        133 NKH-----GTDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       133 n~~-----g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      |..     +.....+.|.|...+..+.....+...+.+|+
T Consensus        95 ~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~  134 (316)
T 3vh8_G           95 HPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGE  134 (316)
T ss_dssp             CSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTC
T ss_pred             cCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCC
Confidence            642     22344566777655433333333444466665

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.18  E-value=6.9e-11  Score=79.06  Aligned_cols=82  Identities=15%  Similarity=0.228  Sum_probs=61.4

Q ss_pred             eEEecCCcEEEEEEEec--cCCCeeEEEeCCEECC-----------CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         67 RVMQVRQTCKLLCCLSG--KPPPTVKWYKGNRELS-----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g--~p~p~i~W~~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+.+|+.+.|.|....  .+.+.+.|+|++..+.           ..++.+ ..++  +|.|.+++.+|+|.|+|.+.|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~-~~~g--sL~I~~v~~~D~G~Y~C~~~n   82 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI-LANG--DLKIKNLTRDDSGTYNVTVYS   82 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE-CTTS--CEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE-CCCC--cEEEcccccccCEEEEEEEEe
Confidence            45678999999995333  5677899999986431           123332 3444  599999999999999999999


Q ss_pred             CCcce--EEEEEEEEeeCCC
Q psy12421        134 KHGTD--ETNCVVIVESEEE  151 (168)
Q Consensus       134 ~~g~~--~~~~~l~v~~~p~  151 (168)
                      ..|..  ...+.|.|..++.
T Consensus        83 ~~g~~~~~~~~~l~V~~~~~  102 (176)
T 1hng_A           83 TNGTRILNKALDLRILEMVS  102 (176)
T ss_dssp             TTCCEEEEEEEEEEEECCCC
T ss_pred             CCCCEEEEEEEEEEEeCCCC
Confidence            99986  6667788876543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.18  E-value=7.1e-11  Score=84.62  Aligned_cols=93  Identities=20%  Similarity=0.282  Sum_probs=62.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEec-cC-CCeeEEEeCC--EECC-------------CCCeEEEecCCEEEEEEccC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSG-KP-PPTVKWYKGN--RELS-------------KRDYSMSYSDGVVSMEIIDC  119 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p-~p~i~W~~~~--~~~~-------------~~~~~~~~~~~~~~l~i~~~  119 (168)
                      ++.+...+. ..+.+|+++.|.|.+.+ .+ .+.+.|++..  ..+.             ..++..........|.|.++
T Consensus       140 ~~~v~~~p~-~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v  218 (280)
T 3fku_X          140 QPGLTQPPS-VSKGLRQTATLTCTGNSNNVGNQGAAWLQQHQGHPPKLLSYRNNDRPSGISERFSASRSGNTASLTITGL  218 (280)
T ss_dssp             CCSBBCCSE-EEECTTCCEEEEEECCCCCCCTTCCEEEEECSSSCCEESCCTTCCCCSSSCTTEEEEEETTEEEEEECSC
T ss_pred             eeEEEeCCc-EEEecCCCEEEEEEecCCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCCEEEEccCCEEEEEECCC
Confidence            455555555 78899999999999987 44 4889999832  2111             13344444455567999999


Q ss_pred             CCCCCeEEEEEEEeCCcc---eEEEEEEEEeeCC
Q psy12421        120 KPEDSGEYKCVATNKHGT---DETNCVVIVESEE  150 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~---~~~~~~l~v~~~p  150 (168)
                      +.+|+|.|.|.+.|..+.   ......|.|...+
T Consensus       219 ~~~DsG~Y~C~~~~~~~~~~~~g~~t~l~V~~~~  252 (280)
T 3fku_X          219 QPEDEADYYCSTWDSSLSAVVFGGGTKLTVLGQP  252 (280)
T ss_dssp             CGGGCSEEEEEEEETTTTEEEEBCCCEEEEC---
T ss_pred             CHHHCEEEEEEEecCCCCceEECCCEEEEECCCC
Confidence            999999999999987632   1223356665443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.18  E-value=1.2e-11  Score=91.17  Aligned_cols=97  Identities=16%  Similarity=0.200  Sum_probs=77.8

Q ss_pred             ccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCe-EEEEEEE
Q psy12421         54 VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVAT  132 (168)
Q Consensus        54 ~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~  132 (168)
                      .+.+|.|...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+...... ........|.|.++...|+| .|+|.|.
T Consensus       155 ~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~D~G~~Y~C~a~  233 (347)
T 2ifg_A          155 SCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMK-SGGLPSLGLTLANVTSDLNRKNVTCWAE  233 (347)
T ss_dssp             TCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECC-CCCSSEEEEEEESCCSTTTTCCEEECCE
T ss_pred             cCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccccc-ceecccceEEEeeCChHHCCCeEEEEEE
Confidence            456899998888899999999999999999999999999988654321100 01223447999999999999 9999999


Q ss_pred             eCCcceEEEEEEEEeeCCC
Q psy12421        133 NKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~p~  151 (168)
                      |..|.....+.|.|..+|.
T Consensus       234 n~~g~~~~~~~l~V~~~P~  252 (347)
T 2ifg_A          234 NDVGRAEVSVQVNVSFPAS  252 (347)
T ss_dssp             ETTEECCEEECCCCBEEEE
T ss_pred             cCCCCEEEEEEEEEcCCCe
Confidence            9999988888777766554

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.18  E-value=1.5e-11  Score=84.16  Aligned_cols=83  Identities=17%  Similarity=0.312  Sum_probs=58.5

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-eeEEEeCCEECCCC-CeEE---EecCC----EEEEEEccCCCCCCe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKR-DYSM---SYSDG----VVSMEIIDCKPEDSG  125 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~-~~~~---~~~~~----~~~l~i~~~~~~d~G  125 (168)
                      .+|.+........+..|+.+.|.|.+.| .|.+ .+.|++++..+... ....   ...++    .+.|.|..+...|+|
T Consensus       110 ~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  189 (210)
T 1lk3_L          110 AAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHN  189 (210)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCC
T ss_pred             cCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCC
Confidence            3677765544433447999999999997 4544 89999999987654 1110   01122    126899999999999


Q ss_pred             EEEEEEEeCCcce
Q psy12421        126 EYKCVATNKHGTD  138 (168)
Q Consensus       126 ~Y~C~a~n~~g~~  138 (168)
                      .|+|.|.|.....
T Consensus       190 ~Y~C~a~n~~~~~  202 (210)
T 1lk3_L          190 LYTCEVVHKTSSS  202 (210)
T ss_dssp             EEEEEEECTTCSS
T ss_pred             cEEEEEEecCCCC
Confidence            9999999986644

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.17  E-value=2.5e-10  Score=71.69  Aligned_cols=77  Identities=19%  Similarity=0.302  Sum_probs=58.5

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--E---EC----------CCCCeEEEecCCEEEEEEccCCCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--R---EL----------SKRDYSMSYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~l~i~~~~~~  122 (168)
                      +.+...+....+.+|++++|.|.+.+.+.+.+.|+++.  .   .+          ...++......+...|.|.+++.+
T Consensus         4 ~~v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   83 (119)
T 2e27_L            4 IQMTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSGSGRDYSFSISNLEPE   83 (119)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEECSCCGG
T ss_pred             ceeEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEccCCEEEEEECCCChH
Confidence            34555666788999999999999998888899999853  1   11          023444444455668999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12421        123 DSGEYKCVATNK  134 (168)
Q Consensus       123 d~G~Y~C~a~n~  134 (168)
                      |+|.|.|.+.|.
T Consensus        84 DsG~Y~C~~~~~   95 (119)
T 2e27_L           84 DAATYYCLQYDN   95 (119)
T ss_dssp             GCEEEEEEECGG
T ss_pred             HCEEEEEEEccC
Confidence            999999999875

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.17  E-value=5.1e-10  Score=67.90  Aligned_cols=82  Identities=20%  Similarity=0.230  Sum_probs=59.0

Q ss_pred             eEEecCCcEEEEEEEec-cCCCeeEEEeCC----EECCCCCe---EEEe--cCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         67 RVMQVRQTCKLLCCLSG-KPPPTVKWYKGN----RELSKRDY---SMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~----~~~~~~~~---~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      ..+..|+.+.|.|.+.+ .|.|.+.|.|.+    ..+.....   ....  ......|.|..+..+|+|.|.|.|.|..|
T Consensus        24 ~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g  103 (122)
T 1xau_A           24 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ  103 (122)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             EEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCC
Confidence            56889999999999976 689999999965    23322111   1111  11345799999999999999999999988


Q ss_pred             ce-EEEEEEEEee
Q psy12421        137 TD-ETNCVVIVES  148 (168)
Q Consensus       137 ~~-~~~~~l~v~~  148 (168)
                      .. +.+..|.|.+
T Consensus       104 ~ieSHs~ti~V~~  116 (122)
T 1xau_A          104 VINSHSVTIHVRE  116 (122)
T ss_dssp             EEECCCEEEEEC-
T ss_pred             ceeeeEEEEEEEe
Confidence            74 3355566654

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.17  E-value=2e-11  Score=83.87  Aligned_cols=84  Identities=19%  Similarity=0.280  Sum_probs=58.3

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-eeEEEeCCEECCCC-CeEE--E-ecCC----EEEEEEccCCCCCCe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKR-DYSM--S-YSDG----VVSMEIIDCKPEDSG  125 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~-~~~~--~-~~~~----~~~l~i~~~~~~d~G  125 (168)
                      .+|.+...........|+.+.|.|.+.| .|.| .+.|++++..+... ....  . ..++    .+.|.|......|.|
T Consensus       113 ~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g  192 (216)
T 2xzc_L          113 AAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK  192 (216)
T ss_dssp             BCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred             CCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCC
Confidence            5677765443333346889999999998 4554 89999999987654 1110  0 1122    126889888999999


Q ss_pred             EEEEEEEeCCcceE
Q psy12421        126 EYKCVATNKHGTDE  139 (168)
Q Consensus       126 ~Y~C~a~n~~g~~~  139 (168)
                      .|+|.|.|......
T Consensus       193 ~Y~C~a~n~~~~~~  206 (216)
T 2xzc_L          193 VYACEVTHQGLSSP  206 (216)
T ss_dssp             EEEEEEECTTCSSC
T ss_pred             cEEEEEEcCCCCCc
Confidence            99999999875544

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.17  E-value=2e-11  Score=83.53  Aligned_cols=124  Identities=14%  Similarity=0.115  Sum_probs=78.9

Q ss_pred             CceeEEEEeCCCCCCCCCCcccce----eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccC--CCee
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQV----RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKP--PPTV   89 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i   89 (168)
                      .|.+.+++..|.|.  |.|.....    .......+.+. .....+|.+...+....+..|+.+.|.|.+.|.+  .+.+
T Consensus        69 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~l~V~-~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v  145 (211)
T 3tv3_L           69 SLTVSGLQTDDEAV--YYCGSLVGNWDVIFGGGTKLTVL-GQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTV  145 (211)
T ss_dssp             EEEEESCCGGGCEE--EEEEEEETTTEEEECCCEEEEEC-CSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEE
T ss_pred             EEEECCCChhHCEE--EEEEEecCCCceeECCCceEEEe-CCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEE
Confidence            36678888888666  43332211    11122222222 1223678887766555555799999999999853  5789


Q ss_pred             EEEeCCEECCCCC---eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         90 KWYKGNRELSKRD---YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        90 ~W~~~~~~~~~~~---~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      .|++++..+....   ......++    ...|.|......|.|.|+|.|.|..+....++
T Consensus       146 ~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          146 AWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             EEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSSCEEEEEEETTEEEEEEE
T ss_pred             EEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECCCCEEeec
Confidence            9999998875411   01111122    13588888888899999999999987766554

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.17  E-value=1.4e-10  Score=78.95  Aligned_cols=112  Identities=12%  Similarity=0.130  Sum_probs=69.5

Q ss_pred             CceeEEEEeCCCCCCCCCCcccce-------eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCe
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQV-------RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT   88 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~   88 (168)
                      .+.+.++...|.|.  |.|.....       .....+.+.+.  ....+|.+...+. ..+.+|++++|.|.+.+ +.+.
T Consensus        64 ~l~I~~v~~~D~G~--Y~C~a~~~~~~~~~~~~s~~~~l~V~--~~~~~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~  137 (201)
T 1nkr_A           64 NFSISRMTQDLAGT--YRCYGSVTHSPYQVSAPSDPLDIVII--GLYEKPSLSAQPG-PTVLAGENVTLSCSSRS-SYDM  137 (201)
T ss_dssp             EEEESSCCGGGCEE--EEEEEEBTTBTTCCCCCCCCEEEEEE--CSSCCCEEEEESC-SEECTTCEEEEEEEESS-CCSE
T ss_pred             EEEeccCCcccCeE--EEEeEecCCCCccccCCCCCEEEEee--ccCCCCceecCCC-CccCCCCeEEEEEeCCC-CCce
Confidence            35566677777665  43332110       11122233332  2234677766554 57889999999999876 6789


Q ss_pred             eEEEeCCEECCCCCeEEEecCC--EEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         89 VKWYKGNRELSKRDYSMSYSDG--VVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        89 i~W~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +.|+|++..+...........+  ...|.|.+++  |+|.|+|.|.+..
T Consensus       138 ~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--d~G~Y~C~a~~~~  184 (201)
T 1nkr_A          138 YHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFHD  184 (201)
T ss_dssp             EEEEETTCSSCEEEECEEEETTEEEEEEEEEECC--SCEEEEEEEEETT
T ss_pred             EEEEECCcccCcccccccccCCceEEEEEeCCcC--CCeeEEEEEEcCC
Confidence            9999998765432111111111  3368999998  9999999998763

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.17  E-value=1.4e-10  Score=81.99  Aligned_cols=97  Identities=12%  Similarity=0.088  Sum_probs=67.4

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC-Cc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK-HG  136 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~-~g  136 (168)
                      |.+.  +....+.+|+.+.|.|.+.  |.|.+.|  +|..+...       +....|.+......|.|.|+|.|.|. .|
T Consensus       101 p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~g~~~~~~-------~~~~~l~i~~~~~~~~g~Y~C~a~n~~~g  167 (265)
T 2oz4_A          101 PNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--NGVPAQPL-------GPRAQLLLKATPEDNGRSFSCSATLEVAG  167 (265)
T ss_dssp             CEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--SSCSSSCC-------SSEECCEEECCGGGTTEEEEEEEEEECSS
T ss_pred             ceee--cCCceecCCCcEEEEEEcc--CCCEEEE--CCEEccCC-------CCcEEEEEccccccCCceEEEEEEcCCCC
Confidence            4443  4466788899999999987  9999999  77666332       12235788889999999999999854 47


Q ss_pred             ceE---EEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        137 TDE---TNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       137 ~~~---~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      ...   ..+.|.|..+|............+.+|+
T Consensus       168 ~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~  201 (265)
T 2oz4_A          168 QLIHKNQTRELRVLYGPRLDERDCPGNWTWPENS  201 (265)
T ss_dssp             SEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTC
T ss_pred             CcccccccEEEEEEeCCccccccCCCccEEcCCC
Confidence            655   6677888777665333212233566665

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=99.16  E-value=2.8e-10  Score=70.66  Aligned_cols=85  Identities=16%  Similarity=0.286  Sum_probs=59.0

Q ss_pred             CeEEecCCcEEEEEEEe-ccCCCe----eEEEeCCEEC-------------C-CCCeEEEec---C--CEEEEEEccCCC
Q psy12421         66 PRVMQVRQTCKLLCCLS-GKPPPT----VKWYKGNREL-------------S-KRDYSMSYS---D--GVVSMEIIDCKP  121 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~-g~p~p~----i~W~~~~~~~-------------~-~~~~~~~~~---~--~~~~l~i~~~~~  121 (168)
                      ...+.+|+++.|.|.+. +.+.+.    +.|++++...             . ..+..+...   .  +..+|.|.+++.
T Consensus         9 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~I~~v~~   88 (118)
T 3udw_C            9 QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGLRV   88 (118)
T ss_dssp             EEEEETTSCEEECCEEECCTTCCCEEEEEEEEETTCSBCSEEEETTTEEEETTCSSEEETTCCTTSCCCBCCEEECSCCG
T ss_pred             eEEEeeCCcEEEEEEeECCCCCCCceEEEEEEEcCCCceEEEEeCCCCCccCCcCcEEEecccccCCCCCcEEEEeecCh
Confidence            36778999999999984 455444    8999985311             0 111111110   0  134799999999


Q ss_pred             CCCeEEEEEEEe-CCcceEEEEEEEEeeCC
Q psy12421        122 EDSGEYKCVATN-KHGTDETNCVVIVESEE  150 (168)
Q Consensus       122 ~d~G~Y~C~a~n-~~g~~~~~~~l~v~~~p  150 (168)
                      +|+|.|.|.+.+ ..|.......|.|..+|
T Consensus        89 ~D~G~Y~C~v~~~~~~~~~~~~~L~V~~~P  118 (118)
T 3udw_C           89 EDEGNYTCLFVTFPQGSRSVDIWLRVLAKP  118 (118)
T ss_dssp             GGCEEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             HHCeEEEEEEEECCCCCccceEEEEEEeCC
Confidence            999999999999 77877888888887654

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.16  E-value=2.7e-10  Score=91.53  Aligned_cols=96  Identities=14%  Similarity=0.144  Sum_probs=66.3

Q ss_pred             CeEEeecCC-eEEecCCcEEEEEEEec--cCCCeeEEEeCCEECCCCCeEEE---------ecCCEEEEEEccCCCCCCe
Q psy12421         58 PNFTFLLRP-RVMQVRQTCKLLCCLSG--KPPPTVKWYKGNRELSKRDYSMS---------YSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        58 p~~~~~~~~-~~~~~g~~~~l~C~~~g--~p~p~i~W~~~~~~~~~~~~~~~---------~~~~~~~l~i~~~~~~d~G  125 (168)
                      |.+...+.. ..+.+|+.+.|.|.+.+  .+.+.+.|++++..+........         .......|.|.++...|+|
T Consensus       224 ~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  303 (772)
T 3v2a_R          224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG  303 (772)
T ss_dssp             EEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCS
T ss_pred             ceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCe
Confidence            444444444 68999999999999987  55678999999876543221110         0112336999999999999


Q ss_pred             EEEEEEEeCCcceEEEEEEEEeeCCCch
Q psy12421        126 EYKCVATNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       126 ~Y~C~a~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      .|+|.+.|..|.......|.|..+|...
T Consensus       304 ~Y~C~~~~~~~~~~~~~~l~V~~~p~~~  331 (772)
T 3v2a_R          304 LYTCAASSGLMTKKNSTFVRVHEKPFVA  331 (772)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCC--
T ss_pred             EEEEEEEcCCcceeEEEEEEEeCCCeeE
Confidence            9999999999988888889988876543

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=99.16  E-value=3.6e-10  Score=73.23  Aligned_cols=95  Identities=19%  Similarity=0.234  Sum_probs=62.1

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--E---EC----------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--R---EL----------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +...+....+.+|++++|.|.+.+.+...+.||+..  .   .+          ...++.........+|.|.+++.+|+
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~~~Ds   82 (143)
T 3u6r_L            3 LTQSPATLSLSPGERATLSCRASQSVNKYLAWYQQKPGQAPRLLIYDASNRATGIPARFSGSGSGTDFTLTISNLEPEDF   82 (143)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             EEECCCEEEEeCCCCEEEEEEECCCCceeeEEEEECCCCCCEEEEEeCCccCCCccCcEeEEccCCEEEEEEccCcccCC
Confidence            445666678899999999999988777789999852  1   11          12344444445566899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCCCchh
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      |.|.|.+.+..........|.|...+..+.
T Consensus        83 G~Y~C~~~~~~~~fg~gt~L~V~~~~~~p~  112 (143)
T 3u6r_L           83 AVYYCQQRSDWVTFGGGTKVEIKAAADDDD  112 (143)
T ss_dssp             EEEEEEECSSBCEECCCEEEEEC-------
T ss_pred             EEEEEEEecCCCEECCCEEEEECCCCCCCC
Confidence            999999886541112234566665444433

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.15  E-value=1.7e-10  Score=81.46  Aligned_cols=82  Identities=18%  Similarity=0.332  Sum_probs=58.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC---C-------------CCCeEEEe-cCCEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL---S-------------KRDYSMSY-SDGVVSMEI  116 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~---~-------------~~~~~~~~-~~~~~~l~i  116 (168)
                      .+|.+...+....+.+|+++.|.|.+.+. .+.+.|+++..  .+   .             ..++.... ......|.|
T Consensus       136 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I  214 (256)
T 3tf7_C          136 SEAAVTQSPRNKVTVTGENVTLSCRQTNS-HNYMYWYRQDTGHELRLIYYSYGAGNLQIGDVPDGYKATRTTQEDFFLTL  214 (256)
T ss_dssp             --CCEEESCSEEEEETTCCEEECEEECSC-CSEEEEEEECTTSCEEEEEEEESTTCCEECSCCTTCEEECCSSSBCEEEE
T ss_pred             CccEEEecCCEEEEeCCCcEEEEEEcCCC-ceEEEEEEECCCCCeEEEEEEcCCCceecCccCCceEEEeCCCCeEEEEE
Confidence            46777777878888899999999999886 78999998421  00   0             11222211 123347999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcce
Q psy12421        117 IDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      .+++.+|+|.|.|.|.|..|..
T Consensus       215 ~~v~~~DsG~Y~C~a~n~~g~~  236 (256)
T 3tf7_C          215 ESASPSQTSLYFCASSDAPGQL  236 (256)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEE
T ss_pred             CCCCHHHCEEEEEEecCCCCcc
Confidence            9999999999999999987654

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.15  E-value=1.9e-10  Score=70.69  Aligned_cols=75  Identities=19%  Similarity=0.296  Sum_probs=56.9

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--E---EC----------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--R---EL----------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +...+....+.+|++++|.|.+.+.+.+.+.|+++.  .   .+          ...++......+...|.|.+++.+|+
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   83 (107)
T 1i8k_A            4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (107)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             eEeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEccCCEEEEEECCCCHHHC
Confidence            344566678889999999999998888899999853  1   11          02344444445566899999999999


Q ss_pred             eEEEEEEEeC
Q psy12421        125 GEYKCVATNK  134 (168)
Q Consensus       125 G~Y~C~a~n~  134 (168)
                      |.|.|.+.+.
T Consensus        84 G~Y~C~~~~~   93 (107)
T 1i8k_A           84 GDYYCLQSFN   93 (107)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEEEEeeC
Confidence            9999999875

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.15  E-value=7.6e-11  Score=85.84  Aligned_cols=86  Identities=12%  Similarity=0.249  Sum_probs=56.1

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEeccCCC--eeEEEeCCEECCCC--CeEEEecCCE----EEEEEccCCCCCC
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKR--DYSMSYSDGV----VSMEIIDCKPEDS  124 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~--~~~~~~~~~~----~~l~i~~~~~~d~  124 (168)
                      .+..+|.+...+..  +.+|+.+.|.|.+.|.+++  .+.|+++|..+...  .......++.    ..|.|..+...|.
T Consensus       218 ~v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~  295 (327)
T 2wng_A          218 TIRVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWLLVNVSAHRDD  295 (327)
T ss_dssp             TBCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEEEEEC-------C
T ss_pred             ccCCCCEEEEecCC--cCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEEEEEEccccccCC
Confidence            34567888765554  6789999999999996544  79999999877431  1111222231    3578888899999


Q ss_pred             eEEEEEEEeCCcceEE
Q psy12421        125 GEYKCVATNKHGTDET  140 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~  140 (168)
                      |.|+|.|.|..|....
T Consensus       296 G~Y~C~a~N~~~~~~s  311 (327)
T 2wng_A          296 VKLTCQVEHDGQPAVS  311 (327)
T ss_dssp             CEEEEEEEETTCCCEE
T ss_pred             CEEEEEEEeCCCCCch
Confidence            9999999999987543

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.15  E-value=1.9e-10  Score=70.96  Aligned_cols=73  Identities=19%  Similarity=0.246  Sum_probs=52.3

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCC-----eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-----TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-----~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      .+|.+...+. ..+.+|+.++|.|.+.+.+..     .+.|+|++..+..     .....  .|.|.+++..|+|.|.|.
T Consensus         7 ~kP~l~~~p~-~~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~-----~~~~~--~l~i~~v~~~dsG~Y~C~   78 (108)
T 4hwn_A            7 PAPILRAVPS-AEPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS-----RGLSS--EFQIPTASEDHSGSYWCE   78 (108)
T ss_dssp             CCCEEEEESC-SSCBTTCCEEEEEEC---------CCEEEEEETTEEEEE-----EESCC--EEEESSCCGGGCEEEEEE
T ss_pred             CCCEEEecCC-CcCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC-----CCccc--EEEeCccCcccCeEEEEE
Confidence            3567666554 357789999999998765544     4899999986542     11233  799999999999999999


Q ss_pred             EEeCCc
Q psy12421        131 ATNKHG  136 (168)
Q Consensus       131 a~n~~g  136 (168)
                      +.|..+
T Consensus        79 ~~~~~~   84 (108)
T 4hwn_A           79 AATEDN   84 (108)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            999765

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.15  E-value=3.5e-10  Score=79.99  Aligned_cols=94  Identities=23%  Similarity=0.371  Sum_probs=68.2

Q ss_pred             eEEecCCcEEEEEEEec-cCCC--eeEEEeCCEECCCCCeEEEecCCEEEEEEccC---CCCCCeE--EEEEEEeCCcce
Q psy12421         67 RVMQVRQTCKLLCCLSG-KPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDC---KPEDSGE--YKCVATNKHGTD  138 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~---~~~d~G~--Y~C~a~n~~g~~  138 (168)
                      ..+.+|+.+.|.|.+.| .|.|  .+.|++++..+..   .+...+.  .+.+...   ...|.|.  |+|.+.|..|..
T Consensus        13 ~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~---~~~~~~~--~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~   87 (265)
T 2oz4_A           13 RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP---TVTYGND--SFSAKASVSVTAEDEGTQRLTCAVILGNQSQ   87 (265)
T ss_dssp             SEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC---EEEECSS--EEEEEEEEEECGGGCEEEEEEEEEEETTEEE
T ss_pred             ceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc---eEeeCCC--eEEEEeecccccccCCcceEEEEEecCCCCc
Confidence            47889999999999998 7777  9999999998765   2233333  4444444   6778775  999999999998


Q ss_pred             EEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        139 ETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       139 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      .....|.|...|.+...  .....+.+|+
T Consensus        88 ~~~~~l~V~~~p~p~~~--~~~~~v~~G~  114 (265)
T 2oz4_A           88 ETLQTVTIYSFPAPNVI--LTKPEVSEGT  114 (265)
T ss_dssp             EEEEEEEEECCCCCEEE--ESCSEEETTC
T ss_pred             EEEEEEEEeCCCCceee--cCCceecCCC
Confidence            88889998765542222  3344455564

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.15  E-value=1.4e-10  Score=83.47  Aligned_cols=96  Identities=13%  Similarity=0.139  Sum_probs=63.9

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCC------eeEEEeCC--EECC-------------CCCeEEEecCCEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP------TVKWYKGN--RELS-------------KRDYSMSYSDGVVSME  115 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p------~i~W~~~~--~~~~-------------~~~~~~~~~~~~~~l~  115 (168)
                      ++.+...+....+.+|+++.|.|.+.+.+.+      .+.|+++.  ..+.             ..++..........|.
T Consensus       159 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~  238 (291)
T 2gki_A          159 DLVMSQSPSSLAVSAGEKVTMSCKSSQSLFNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLT  238 (291)
T ss_dssp             CCCEECSCSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             cceEEcCCCEEEEcCCCcEEEEEEcCCccccccccceeEEEEEECCCCCcEEEEEEcccCCCCcCCCEEEEecCCEEEEE
Confidence            3455555666789999999999999988765      89999963  2110             2233333344455799


Q ss_pred             EccCCCCCCeEEEEEEEeCCcceEE-EEEEEEeeCCCc
Q psy12421        116 IIDCKPEDSGEYKCVATNKHGTDET-NCVVIVESEEES  152 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~v~~~p~~  152 (168)
                      |.+++.+|+|.|.|.+.|....... ...|.|+..+..
T Consensus       239 I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~v~~~~~~  276 (291)
T 2gki_A          239 ISSVQAEDLAVYYCKQSYYHMYTFGSGTKLEIKHHHHH  276 (291)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEECC---
T ss_pred             ECCCCHHHCEEEEEEEccCCceEEcCCEEEEEEeeEcC
Confidence            9999999999999999985432221 234555554433

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.15  E-value=2.3e-10  Score=70.50  Aligned_cols=75  Identities=24%  Similarity=0.322  Sum_probs=55.7

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-----ECC----------CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-----ELS----------KRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-----~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +...+....+.+|+++.|.|.+.+.+.+.+.|++...     .+.          ..++......+...|.|.+++.+|+
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~Ds   83 (108)
T 1qfw_M            4 LTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGSGSATDFTLTISSVQAEDF   83 (108)
T ss_dssp             EEEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECCBCSSEEEEEESSCCTTCC
T ss_pred             EEEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEEcCCCEEEEEECCCChhhC
Confidence            4455667888999999999999888888999998531     110          1233322233456799999999999


Q ss_pred             eEEEEEEEeC
Q psy12421        125 GEYKCVATNK  134 (168)
Q Consensus       125 G~Y~C~a~n~  134 (168)
                      |.|.|.+.+.
T Consensus        84 G~Y~C~~~~~   93 (108)
T 1qfw_M           84 ADYHCGQTYN   93 (108)
T ss_dssp             SEEEEEECSS
T ss_pred             EEEEEEEccC
Confidence            9999999875

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.15  E-value=4.1e-11  Score=82.32  Aligned_cols=82  Identities=15%  Similarity=0.052  Sum_probs=56.3

Q ss_pred             cCCeEEecC--CcEEEEEEEeccCCCeeEEEeC---CEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         64 LRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKG---NRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        64 ~~~~~~~~g--~~~~l~C~~~g~p~p~i~W~~~---~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      +....+.+|  +.+.|.|.+.+ |.+.+.|+++   +..+...........+  .|.|.+++.+|+|.|.|.|.|..+..
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~~~~~--~l~I~~v~~~D~G~Y~C~a~n~~~~~   90 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISWDSKK--GFTIPSYMISYAGMVFCEAKINDESY   90 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEEETTT--EEEEEGGGTTTCSEEEEEEC----CE
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccccCCc--cEEEccCChhcCceEEEEEEECCeeE
Confidence            355778899  99999999976 7899999884   6665543322222334  69999999999999999999854443


Q ss_pred             EE-EEEEEEee
Q psy12421        139 ET-NCVVIVES  148 (168)
Q Consensus       139 ~~-~~~l~v~~  148 (168)
                      .. .+.|.|..
T Consensus        91 ~s~~~~l~v~~  101 (213)
T 2x1w_L           91 QSIMYIVVVVG  101 (213)
T ss_dssp             ECCCEEEEECB
T ss_pred             EEEEEEEEEeC
Confidence            32 25565543

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.14  E-value=3.8e-11  Score=83.42  Aligned_cols=135  Identities=13%  Similarity=0.065  Sum_probs=73.8

Q ss_pred             CceeEEEEeCCCCCCCCCCcccce---eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQV---RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVK   90 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~   90 (168)
                      .|.+.+++..|.+.  |.|.....   .......+.+.. ....+|.+........+..|+.+.|.|.+.|. |.| .+.
T Consensus        80 sL~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~L~V~~-~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~  156 (227)
T 1mju_H           80 YMQLSSLTSDDSAV--YYCANKLGWFPYWGQGTLVTVSA-AKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLT  156 (227)
T ss_dssp             EEEECSCCGGGCEE--EEEEEEETTEEEECCCEEEEECS-SCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEE
T ss_pred             EEEECCCCcccCEE--EEEEECCCCceEEcCcEEEEEcC-CCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEE
Confidence            46667777788666  43322211   011122222221 11235666544333445679999999999985 776 999


Q ss_pred             EEeCCEECCCC-CeEEEecC---CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchh
Q psy12421         91 WYKGNRELSKR-DYSMSYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus        91 W~~~~~~~~~~-~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      |++++..+... .......+   ....|.|......| |.|+|.|.|..+.......+.+..+|..+.
T Consensus       157 W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~p~~~~  223 (227)
T 1mju_H          157 WNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKIEPRGPTIKPC  223 (227)
T ss_dssp             EGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEEEEEEGGGTEEEEEECCCCCC-----
T ss_pred             EecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEEEEEECCCCcceEEEeCCCCCCCCCC
Confidence            99998754210 00011111   12358888888877 999999999887777777777766665544

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.14  E-value=3.6e-11  Score=82.51  Aligned_cols=123  Identities=15%  Similarity=0.197  Sum_probs=74.2

Q ss_pred             ceeEEEEeCCCCCCCCCCccccee-------ccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVR-------RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-   87 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-   87 (168)
                      |.+.+++..|.|.  |.|......       ......+.+. .....+|.+...........|+.+.|.|.+.| .|.| 
T Consensus        77 L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~~~l~V~-~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~  153 (218)
T 3s96_B           77 LSISNIQPEDEAI--YICGVGDTIKEQFVYVFGGGTKVTVL-GQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGV  153 (218)
T ss_dssp             EEESSCCGGGCEE--EEEEEEEEETTEEEEEECCCEEEEEE-SCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCC
T ss_pred             EEEccCCcccCEE--EEEEEecCCCCceeEEEcCcEEEEEe-cCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCe
Confidence            6677788888666  433332211       1122233332 12225677766555555556889999999998 5767 


Q ss_pred             eeEEEeCCEECCCCC--eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         88 TVKWYKGNRELSKRD--YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        88 ~i~W~~~~~~~~~~~--~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      .+.|++++..+....  ......++    ...|.|......|.|.|+|.|.|..+....++
T Consensus       154 ~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          154 TVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             EEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            899999999885421  00000111    12377777777889999999999987665443

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.14  E-value=5.1e-11  Score=87.98  Aligned_cols=118  Identities=13%  Similarity=0.121  Sum_probs=80.8

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK   93 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~   93 (168)
                      ...|.+.+++..|.|.  |.|.......  ...+.+..        +...+ ...+.+|+.+.|.|.+.+.|.|.+.|++
T Consensus        66 ~~~L~I~~v~~~D~G~--Y~C~~~n~~~--~~~l~V~~--------~~~~~-~~~v~~G~~v~l~C~~~~~p~~~v~W~~  132 (363)
T 1wio_A           66 NFPLIIKNLKIEDSDT--YICEVEDQKE--EVQLLVFG--------LTANS-DTHLLQGQSLTLTLESPPGSSPSVQCRS  132 (363)
T ss_dssp             CCCEEECSCCGGGCEE--EEEEETTEEE--EEEEEEEE--------EEESS-CSSEESBSCEEEEEECCTTCCCCEEEEC
T ss_pred             eEEEEECCCCHHHCEE--EEEEEEECCC--cEEEEEEe--------CCCCC-ceEEecCCCEEEEEEcCCCCCCeEEEEc
Confidence            3457788888888666  4333322211  22222221        11222 2456799999999999999999999999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCch
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      ++..+       .....  .|.|.++...|+|.|+|.|.|..+.....+.|.|...|..+
T Consensus       133 ~~~~~-------~~~~~--~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~  183 (363)
T 1wio_A          133 PRGKN-------IQGGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKAS  183 (363)
T ss_dssp             SSSCE-------EEESS--EEEECSBCGGGCEECEEEEEETTEEEEECCEECEECCSCSE
T ss_pred             CCCcc-------cccce--EEEEeeCChhcCCEEEEEEecCCCeEEEEEEEEEecCCCCC
Confidence            86432       12333  79999999999999999999987777777777777655443

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=99.14  E-value=3.2e-10  Score=71.77  Aligned_cols=87  Identities=15%  Similarity=0.203  Sum_probs=61.5

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCC---CeeEEEeCCEE-----------CCC-------CCeEEEe---cCCEEEEEEc
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRE-----------LSK-------RDYSMSY---SDGVVSMEII  117 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~---p~i~W~~~~~~-----------~~~-------~~~~~~~---~~~~~~l~i~  117 (168)
                      .........+|+++.|.|.+...+.   ..+.|+|++..           ...       .+..+..   ..+..+|.|.
T Consensus        10 ~~~~~v~g~vG~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~R~~~~~~~~~~g~~sL~I~   89 (125)
T 4gos_A           10 VTTVASAGNIGEDGILSCTFEPDIKLSDIVIQWLKEGVLGLVHEFKEGKDELSEQDEMFRGRTAVFADQVIVGNASLRLK   89 (125)
T ss_dssp             EEEECEEEETTSCEEEEEEECCCSCGGGCEEEEEETTCSSBSEEEETTEECCTTBCGGGTTCEEECTTTGGGTBCCEEES
T ss_pred             ccCceEEEeCCCCEEEEEEEcCCcccCcEEEEEEEeccCceEEEEEeecccccccCccccceEEEecCCccCCeEEEEEC
Confidence            3444567788999999999864333   36899986431           100       1111111   1223479999


Q ss_pred             cCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        118 DCKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      +++.+|+|.|.|.+.|..|.....+.|.|--
T Consensus        90 ~v~~~D~G~Y~C~v~~~~g~~~~~v~LkVG~  120 (125)
T 4gos_A           90 NVQLTDAGTYKCYIITSKGKGNANLEYKTGH  120 (125)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CCChHHCEEEEEEEEeCCCeEEEEEEEEECC
Confidence            9999999999999999999999999998853

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.14  E-value=2.3e-11  Score=83.72  Aligned_cols=125  Identities=15%  Similarity=0.147  Sum_probs=72.9

Q ss_pred             CceeEEEEeCCCCCCCCCCccccee------ccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVR------RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-   87 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-   87 (168)
                      .|.+.+++..|.+.  |.|......      ......+.+.. ....+|.+........+..|+.+.|.|.+.| .|.| 
T Consensus        80 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~  156 (219)
T 1c1e_H           80 YLQINNLKNEDMAT--YFCARGTTIVRAMDYWGQGTSLTVSS-AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPV  156 (219)
T ss_dssp             EEEECSCCGGGCEE--EEEEEEETTTTEEEEECCCEEEEECC-CCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCC
T ss_pred             EEEECCCCcccCEE--EEEEEeccCcccceeecCceEEEEec-CCCCCCeEEEecCccccccCCeEEEEEEcccccCCCe
Confidence            46677788888666  433222110      11122222221 1123466655443444568999999999998 8998 


Q ss_pred             eeEEEeCCEECCCCC-eEEEecCC---EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         88 TVKWYKGNRELSKRD-YSMSYSDG---VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        88 ~i~W~~~~~~~~~~~-~~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      .+.|++++..+.... ......+.   ...|.|.... .|.|.|+|.|.|..|.......|
T Consensus       157 ~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~d~g~Y~C~a~n~~~~~~~~~~i  216 (219)
T 1c1e_H          157 TVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSP-RPSETVTCNVAHPASSTKVDKKI  216 (219)
T ss_dssp             EEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEESSS-TTTSCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEEeCCcccceEecCCcccCCeEEEEEEEEEeccc-CCCCEEEEEEEeCCCCccEEEec
Confidence            999999987542100 00111111   1257774444 46699999999998876555443

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.14  E-value=1.8e-09  Score=74.61  Aligned_cols=84  Identities=19%  Similarity=0.314  Sum_probs=60.4

Q ss_pred             CCeEEecCCcEEEEEEEeccCCC---eeEEEeCCEE-----------CCC-------CCeEEEe---cCCEEEEEEccCC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRE-----------LSK-------RDYSMSY---SDGVVSMEIIDCK  120 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~~-----------~~~-------~~~~~~~---~~~~~~l~i~~~~  120 (168)
                      ....+.+|+++.|.|.+.+.+.+   .+.|+|++..           +..       .+.....   ..+..+|.|.+++
T Consensus        12 ~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   91 (226)
T 4f80_A           12 GPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNVT   91 (226)
T ss_dssp             SCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESSCC
T ss_pred             CCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEeeCc
Confidence            34678899999999999876655   6899987532           110       1111111   2245689999999


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        121 PEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      ..|+|.|.|.|.|..|.....+.+.+..
T Consensus        92 ~~D~G~Y~C~a~n~~~~~~~~v~~~~~~  119 (226)
T 4f80_A           92 ASDSGKYLCYFQDGDFYEKALVELKVAA  119 (226)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEEB
T ss_pred             hHHCeeEEEEEECCCcEEEEEEEEeecc
Confidence            9999999999999988877766665543

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.13  E-value=2.1e-10  Score=86.48  Aligned_cols=89  Identities=19%  Similarity=0.324  Sum_probs=62.3

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEECC------------------CCCeEEEec--CCEEEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRELS------------------KRDYSMSYS--DGVVSME  115 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~~------------------~~~~~~~~~--~~~~~l~  115 (168)
                      +...+....+.+|+.+.|.|.+.|.|  .+.+.|+++  +..+.                  ..++.+...  .+...|.
T Consensus       221 ~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  300 (438)
T 1qgc_4          221 MLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQ  300 (438)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEE
T ss_pred             EEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEE
Confidence            33456677899999999999999988  679999986  43221                  123333322  3355799


Q ss_pred             EccCCCCCCeEEEEEEEeCCc-----ceEEEEEEEEee
Q psy12421        116 IIDCKPEDSGEYKCVATNKHG-----TDETNCVVIVES  148 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~  148 (168)
                      |.++..+|+|.|.|.|.|..+     .......|.|..
T Consensus       301 I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~  338 (438)
T 1qgc_4          301 MSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSA  338 (438)
T ss_dssp             ECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECS
T ss_pred             ECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEec
Confidence            999999999999999998543     222334566653

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.13  E-value=2.9e-10  Score=77.68  Aligned_cols=80  Identities=16%  Similarity=0.192  Sum_probs=60.3

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ...+.+|+++.|.|.+.  |.+.+.|+++  +..+             ...++......+..+|.|.+++.+|+|.|.|.
T Consensus         9 ~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   86 (211)
T 3tv3_L            9 SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKSGNTASLTVSGLQTDDEAVYYCG   86 (211)
T ss_dssp             EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEEESCCGGGCEEEEEE
T ss_pred             eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEccCCEEEEEECCCChhHCEEEEEE
Confidence            56788999999999987  8999999984  2211             11344444455566899999999999999999


Q ss_pred             EEeCCc--ceEEEEEEEEe
Q psy12421        131 ATNKHG--TDETNCVVIVE  147 (168)
Q Consensus       131 a~n~~g--~~~~~~~l~v~  147 (168)
                      +.|..|  .......|.|.
T Consensus        87 ~~~~~~~~~~~~~~~l~V~  105 (211)
T 3tv3_L           87 SLVGNWDVIFGGGTKLTVL  105 (211)
T ss_dssp             EEETTTEEEECCCEEEEEC
T ss_pred             EecCCCceeECCCceEEEe
Confidence            999987  33445567666

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.12  E-value=1.3e-09  Score=75.54  Aligned_cols=92  Identities=18%  Similarity=0.252  Sum_probs=66.9

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EE-----------C--CCCCeEEEecCCEEEEEEccCCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RE-----------L--SKRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~-----------~--~~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      .+.+...+....+.+|+++.|.|.+.+.|.+.+.|+++.  ..           .  ...++......+..+|.|.+++.
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  103 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGSGTDFTLTISSLQP  103 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcCCCEEEEEECCCCh
Confidence            456666677789999999999999999999999999842  10           0  02344444455666899999999


Q ss_pred             CCCeEEEEEEEeCCcce-EEEEEEEEee
Q psy12421        122 EDSGEYKCVATNKHGTD-ETNCVVIVES  148 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  148 (168)
                      +|+|.|.|.+.|..+.. .....|.|..
T Consensus       104 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  131 (237)
T 3sob_L          104 EDFATYYCQQSYTTPPTFGQGTKVEIKR  131 (237)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEEC
T ss_pred             hhCeEEEEeeccCCceEEcCcEEEEEec
Confidence            99999999998876532 2233455543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.12  E-value=4.4e-11  Score=81.83  Aligned_cols=121  Identities=13%  Similarity=0.111  Sum_probs=73.6

Q ss_pred             CceeEEEEeCCCCCCCCCCcccce-eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQV-RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWY   92 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~   92 (168)
                      .|.+.+++..|.|.  |.|..... .......+.+.. ....+|.+........+..|+.+.|.|.+.|. |.| .+.|+
T Consensus        79 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~l~V~~-~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  155 (210)
T 3d9a_H           79 YLDLNSVTTEDTAT--YYCANWDGDYWGQGTLVTVSA-AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  155 (210)
T ss_dssp             EEEECSCCGGGCEE--EEEEETTSSCBCCCEEEEECC-CCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             EEEECCCCcccCEE--EEEEEecCcccccceEEEecc-CCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEe
Confidence            56677888888666  43332211 011112222221 12245666654433445789999999999987 888 99999


Q ss_pred             eCCEECCCC-CeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421         93 KGNRELSKR-DYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETN  141 (168)
Q Consensus        93 ~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  141 (168)
                      +++..+... ..... .++    ...|.|......| |.|+|.|.|..|.....
T Consensus       156 ~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          156 SGSLSSGVHTFPAVL-QSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             GGTBCTTEEECCCEE-ETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEE
T ss_pred             eCCcccceEEcCCcc-CCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcccc
Confidence            988754210 00111 112    2358888888766 99999999999876543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.12  E-value=5.9e-10  Score=78.68  Aligned_cols=88  Identities=25%  Similarity=0.369  Sum_probs=61.8

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC-----------------CCCCeEEEe--cCCEEEEEEccC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL-----------------SKRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~-----------------~~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      .+....+.+|+++.|.|.+.|.|  .+.+.|+++.  ..+                 ...++.+..  ..+..+|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence            34456788999999999999875  7899999852  111                 012343333  244568999999


Q ss_pred             CCCCCeEEEEEEEeCCc-------ce--EEEEEEEEeeCC
Q psy12421        120 KPEDSGEYKCVATNKHG-------TD--ETNCVVIVESEE  150 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g-------~~--~~~~~l~v~~~p  150 (168)
                      +.+|+|.|.|.+.|..|       ..  .....|.|...+
T Consensus        86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~  125 (257)
T 1f3r_B           86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGG  125 (257)
T ss_dssp             CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSC
T ss_pred             CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCC
Confidence            99999999999999864       11  123467776543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.12  E-value=2e-10  Score=81.92  Aligned_cols=75  Identities=17%  Similarity=0.263  Sum_probs=55.7

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------------------CCCCeEEEec--CCEEEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------------------SKRDYSMSYS--DGVVSME  115 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~~~--~~~~~l~  115 (168)
                      +...+....+.+|+++.|.|.+.+.+  .+.+.|++++  ..+                  ...++.+...  .....|.
T Consensus       137 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  216 (276)
T 3auv_A          137 QLVESGGGLVQPGGSLRLSCAASGFTISDYWIHWVRQAPGKCLEWVAGITPAGGYTYYADSVKGRFTISADTSKNTAYLQ  216 (276)
T ss_dssp             EEEEECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECGGGCCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             EEECCCceEecCCCeEEEEEEecCccCCCCEEEEEEcCCCCCcEEEEEEeccCCccccccccCCcEEEEecCCCcEEEEE
Confidence            34456678899999999999999876  5899999963  111                  0123333321  3445799


Q ss_pred             EccCCCCCCeEEEEEEEeC
Q psy12421        116 IIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~  134 (168)
                      |.+++.+|+|.|.|.|.|.
T Consensus       217 I~~v~~~DsG~Y~C~a~n~  235 (276)
T 3auv_A          217 MNSLRAEDTAVYYCARFVF  235 (276)
T ss_dssp             ECSCCGGGCEEEEEEEECS
T ss_pred             ECCCChhHCEEEEEEEEcC
Confidence            9999999999999999997

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.12  E-value=8.4e-11  Score=79.27  Aligned_cols=70  Identities=26%  Similarity=0.397  Sum_probs=56.0

Q ss_pred             EEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEcc-CCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIID-CKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~-~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      ....|+.+.|.|.+.+ +. .+.|+|++..+...      .++  .|.|.+ +...|+|.|+|.|.|..|.....+.+.|
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g~~l~~~------~~~--~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~v   79 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNGQELPQK------HDK--HLVLQDFSEVEDSGYYVCYTPASNKNTYLYLKARV   79 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETTEEECSC------CCS--EEEEESCCTTTSCEEEEEECSSCCCCCCEEECCCC
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECCEECCCC------CCC--EEEECCCCccccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            4467999999999887 44 49999999887653      122  799999 9999999999999999998665555554


Q ss_pred             e
Q psy12421        147 E  147 (168)
Q Consensus       147 ~  147 (168)
                      .
T Consensus        80 ~   80 (186)
T 1jbj_A           80 G   80 (186)
T ss_dssp             C
T ss_pred             e
Confidence            3

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.12  E-value=1.7e-10  Score=81.89  Aligned_cols=110  Identities=11%  Similarity=0.102  Sum_probs=71.4

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeE--EEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS--MSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~--~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++..+......  .........|.|.+++.+|+|.|+|.+.|
T Consensus         6 ~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~~   83 (257)
T 1b6u_A            6 RKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSV   83 (257)
T ss_dssp             CCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEEECBCCTTCEEEEEEECSCCTTTCEEEEEEEEC
T ss_pred             CCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCcceeeeeccCCCceEEEEeecCCcccCEEEEEeEec
Confidence            4567765554 67889999999999864 57899999988644211000  00011234799999999999999999986


Q ss_pred             CCc-----ceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        134 KHG-----TDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       134 ~~g-----~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      ..+     .....+.|.|.+....+.....+...+.+|+
T Consensus        84 ~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p~~~V~~G~  122 (257)
T 1b6u_A           84 THSPYQLSAPSDPLDIVITGLYEKPSLSAQPGPTVLAGE  122 (257)
T ss_dssp             SSCTTSCCCCCCCEEEEEECSSCCCEEECSSCTTCBTTC
T ss_pred             cCCCccccccCCCEEEecccCCCCcceEccCCCccCCCC
Confidence            432     2244567777765433333333444677775

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.12  E-value=2.3e-10  Score=78.18  Aligned_cols=129  Identities=12%  Similarity=0.109  Sum_probs=78.5

Q ss_pred             CCceeEEEEeCCCCCCCCCCcccceeccCc-ceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEE-eccCCCeeEEE
Q psy12421         15 QDNPRLRTRAIPKTIPAYVPEVQQVRRREP-LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWY   92 (168)
Q Consensus        15 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~   92 (168)
                      ..|.+.+++..|.|.  |.|.   +.+... .........+..+|.+...+.......+....+.|.+ .+.|++.+.|+
T Consensus        83 ~sL~I~~v~~~D~G~--Y~C~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~  157 (225)
T 4fmk_A           83 ATLAFRGLRVEDEGN--YTCE---FATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWI  157 (225)
T ss_dssp             CCEEECSCCGGGCEE--EEEE---EEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEE
T ss_pred             EEEEEccCCHHHCcc--eEEE---EEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEE
Confidence            347788888888666  4332   222211 1222222233445665555555566667777777765 46888999999


Q ss_pred             eCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEE--EEEEEEee
Q psy12421         93 KGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDET--NCVVIVES  148 (168)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~~  148 (168)
                      +++.............++    .+.|.|..+...|+|.|+|.|.|..|....  ++.|.|.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          158 SSLGGEAKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             CSSCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             ECCccccCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence            886543221111111222    235999999999999999999999887644  44454544

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.11  E-value=1.4e-10  Score=71.24  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=56.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +|.+...+.. .+.+|++++|.|.+.+. ...+.|+|++..+....  .........|.|.+++..|+|.|.|.+.|..
T Consensus         5 kP~i~~~p~~-~v~~G~~VtL~C~~~~~-~~~~~w~k~g~~~~~~~--~~~~~~~~~l~I~~v~~~dsG~Y~C~~~n~~   79 (105)
T 2vsd_A            5 QPSLSLHPSQ-GVSLGDTVTLRCHLPRM-AAWVQLWLNGTLRFDKE--KDKEQDAAEFSFAVTNLEDAGTYQCRYQVSE   79 (105)
T ss_dssp             CCEEEEESCS-SCCTTCEEEEEEECCSS-CEEEEEEETTEEEEEEE--ECTTCSEEEEEEECCSGGGCEEEEEEEEEET
T ss_pred             CCEEEeCCCC-CcCcCCCEEEEEEcCCC-CcEEEEEECCccceeee--ccCCCCEEEEEECCCCHHHCeEEEEEEEcCC
Confidence            5777766655 68899999999998765 46788999987543211  1112334579999999999999999999864

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.11  E-value=7.7e-11  Score=83.26  Aligned_cols=93  Identities=14%  Similarity=0.225  Sum_probs=53.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC------C--C----------CCeEEE--ecCCEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL------S--K----------RDYSMS--YSDGVVSM  114 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~------~--~----------~~~~~~--~~~~~~~l  114 (168)
                      +|.+...+....+.+|++++|.|.+.+.+.+.+.|++..  ..+      .  .          .++...  ...+..+|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            456666777889999999999999999999999999831  110      0  0          011111  11223369


Q ss_pred             EEccCCCCCCeEEEEEEEeCCcc---eEEEEEEEEeeC
Q psy12421        115 EIIDCKPEDSGEYKCVATNKHGT---DETNCVVIVESE  149 (168)
Q Consensus       115 ~i~~~~~~d~G~Y~C~a~n~~g~---~~~~~~l~v~~~  149 (168)
                      .|.+++.+|+|.|.|.+.|..+.   ......|.|...
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~  119 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDK  119 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC-
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecC
Confidence            99999999999999999998662   233445666654

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=99.11  E-value=6.3e-10  Score=69.01  Aligned_cols=76  Identities=21%  Similarity=0.392  Sum_probs=55.5

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EE---C--------CCCCeEEEe---cCCEEEEEEccCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RE---L--------SKRDYSMSY---SDGVVSMEIIDCKPED  123 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~---~--------~~~~~~~~~---~~~~~~l~i~~~~~~d  123 (168)
                      +...+....+.+|+++.|.|.+.+.+ +.+.|+++.  ..   +        ...++.+..   ..+..+|.|.+++.+|
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D   82 (113)
T 1h5b_A            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEEccCCCCEEEEEECCCChhh
Confidence            34456667889999999999998754 789999853  11   1        112333322   2345679999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy12421        124 SGEYKCVATNKHG  136 (168)
Q Consensus       124 ~G~Y~C~a~n~~g  136 (168)
                      +|.|.|.+.|..|
T Consensus        83 sG~Y~C~~~n~~~   95 (113)
T 1h5b_A           83 SGTYFCAAEASSG   95 (113)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEEecCCC
Confidence            9999999999765

>1zox_A CLM-1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, structural genomics, PSI, protein structure initiative; 2.10A {Mus musculus}

Probab=99.11  E-value=1.1e-09  Score=67.81  Aligned_cols=88  Identities=17%  Similarity=0.143  Sum_probs=61.8

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC-CeeEEEeCCE-----EC-C---------CCCeEEE--ecCCEEEEEEccCCCCCC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNR-----EL-S---------KRDYSMS--YSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~-----~~-~---------~~~~~~~--~~~~~~~l~i~~~~~~d~  124 (168)
                      .+....+.+|+++.|.|...+... ..+.|++...     .+ .         ..++.+.  ...+..+|.|.+++.+|+
T Consensus         7 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~Ds   86 (113)
T 1zox_A            7 GPEEVSGQEQGSLTVQCRYTSGWKDYKKYWCQGVPQRSCKTLVETDASEQLVKKNRVSIRDNQRDFIFTVTMEDLRMSDA   86 (113)
T ss_dssp             CCSEEEEETTSCEEEEEEECGGGTTSCEEEEESSSGGGCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CCCEEEEeCCCcEEEEeECCCCcccceEEEEeCCCCCCCeEEEEecCccccccCCCEEEEECCcCCEEEEEEccCCHHHC
Confidence            344567889999999999986543 3699998642     11 0         1223332  134456899999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      |.|.|.+.+........+.|.|...|
T Consensus        87 G~Y~C~v~~~~~~~~~~v~L~V~~~p  112 (113)
T 1zox_A           87 GIYWCGITKGGLDPMFKVTVNIGPVP  112 (113)
T ss_dssp             EEEEEEECCSSSCCEEEEEEEEECC-
T ss_pred             EEEEEeeEcCCCCccEEEEEEEEcCC
Confidence            99999999875556677788876543

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.11  E-value=3.8e-11  Score=85.76  Aligned_cols=80  Identities=23%  Similarity=0.364  Sum_probs=55.4

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCC--EEEEEEccCCCCCCeEEEEEEEeCCcc---
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDG--VVSMEIIDCKPEDSGEYKCVATNKHGT---  137 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~---  137 (168)
                      ...+..+.+|+++.|.|.+.+.    +.|++++..+.. . ......+  ...|.|.++...|+|.|+|.|.|..|.   
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~-~-~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~   79 (289)
T 3mjg_X            6 PGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQ-E-MAKAQDGTFSSVLTLTNLTGLDTGEYFCTHNDSRGLETD   79 (289)
T ss_dssp             SCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCSE-E-EEECTTSCEEEEEEECSCCGGGCEEEEEECCC------C
T ss_pred             CCCeEEEeCCCcEEEEEeccce----EEEECCCCCccc-c-eeccCCCceeEEEEEccCChhhCEEEEEEEcccCCCCcC
Confidence            3445678899999999998874    999999987632 1 1121222  357999999999999999999999876   


Q ss_pred             eEEEEEEEEee
Q psy12421        138 DETNCVVIVES  148 (168)
Q Consensus       138 ~~~~~~l~v~~  148 (168)
                      ....+.|.|..
T Consensus        80 ~~~~~~v~v~~   90 (289)
T 3mjg_X           80 ERKRLYIFVPD   90 (289)
T ss_dssp             CCEEEEEECCC
T ss_pred             cEEeEEEEEEC
Confidence            34455555553

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=99.10  E-value=7.9e-10  Score=69.99  Aligned_cols=92  Identities=16%  Similarity=0.229  Sum_probs=63.7

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccC----CCeeEEEeCC--EE---C----------CCCCeEEEecCCEEEEEEccC
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKP----PPTVKWYKGN--RE---L----------SKRDYSMSYSDGVVSMEIIDC  119 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~~--~~---~----------~~~~~~~~~~~~~~~l~i~~~  119 (168)
                      .+...+....+.+|++++|.|.+.+.+    .+.+.|++..  ..   +          ...++.........+|.|.++
T Consensus         3 ~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~sL~I~~v   82 (126)
T 4ffy_L            3 VLTQSPASLAVSLGQRATISCRASESVDHYGNSFIYWYQQKPGQPPKLLIYLASNLESGVPARFSGSGSETDFTLTIDSV   82 (126)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSC
T ss_pred             cEEeCCCeEEEeCCCCEEEEEecCCCcccCCCceEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEecCCCEEEEEECCC
Confidence            455566678899999999999998876    5679999852  11   1          013344444455668999999


Q ss_pred             CCCCCeEEEEEEEeCCcceE-EEEEEEEeeCC
Q psy12421        120 KPEDSGEYKCVATNKHGTDE-TNCVVIVESEE  150 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~~p  150 (168)
                      +.+|+|.|.|.+.+...... ....|.|...+
T Consensus        83 ~~~DsG~Y~C~~~~~~~~~fg~gT~L~V~~~g  114 (126)
T 4ffy_L           83 ETDDAATYYCQQNNEDPYTFGGGTKLEIKGGG  114 (126)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEEC--
T ss_pred             CHHHCEEEEEEEecCCCcEECCCEEEEEecCC
Confidence            99999999999988643322 23466666543

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.10  E-value=9.8e-11  Score=88.29  Aligned_cols=123  Identities=15%  Similarity=0.192  Sum_probs=76.5

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceec---cCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-eeE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRR---REPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-TVK   90 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~i~   90 (168)
                      .|.+.+++..|.|.  |.|.......   .....+.+  .....+|.+...........|..+.|.|.+.| .|.| .+.
T Consensus        76 ~L~I~~v~~~D~G~--Y~C~a~n~~~~~~~~~~~l~V--~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~  151 (438)
T 1qgc_4           76 TLTIDPVEADDVAT--YYCQQSNEVPLTFGAGTKLDL--KRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVK  151 (438)
T ss_dssp             EEEESSCCGGGCEE--EEEEECSSTTCCBCCCEEEEE--CCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEE
T ss_pred             EEEeCCCcCcCCee--EEEEEecCCCccccCceeEEe--cCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEE
Confidence            36677777788665  4322211110   11122222  22234677765444433446889999999987 6777 899


Q ss_pred             EEeCCEECCCCCeE-EEe---cCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         91 WYKGNRELSKRDYS-MSY---SDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        91 W~~~~~~~~~~~~~-~~~---~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      |++++..+...... ...   .++    ...|.|.++...|+|.|+|.|.|..|......
T Consensus       152 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~  211 (438)
T 1qgc_4          152 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVK  211 (438)
T ss_dssp             EEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEE
T ss_pred             EEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceec
Confidence            99999887654111 000   111    23689999999999999999999988754333

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.10  E-value=7.6e-11  Score=81.41  Aligned_cols=90  Identities=20%  Similarity=0.327  Sum_probs=66.6

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC-CeeEEEeCCEECC----------CCCe--EE-----------EecCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNRELS----------KRDY--SM-----------SYSDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~~~~----------~~~~--~~-----------~~~~~~~~l~i~~  118 (168)
                      .+....+.+|+.+.|.|.+.+.|. +.+.|++++....          ...+  .+           ...++  .|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~--~L~i~~   83 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG--RLVLAE   83 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC--CEEESS
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc--eEEEcc
Confidence            344567889999999999999885 8999997643211          0000  11           12233  499999


Q ss_pred             CCCCCCeEEEEEEEeCC-cceEEEEEEEEeeCCCchh
Q psy12421        119 CKPEDSGEYKCVATNKH-GTDETNCVVIVESEEESKE  154 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~-g~~~~~~~l~v~~~p~~~~  154 (168)
                      ++..|+|.|.|.+.|.. |.....+.|.|..+|..+.
T Consensus        84 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~  120 (231)
T 2pet_A           84 AQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATE  120 (231)
T ss_dssp             CCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCE
T ss_pred             cCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcE
Confidence            99999999999999987 7778888899988776544

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.10  E-value=3e-12  Score=87.68  Aligned_cols=84  Identities=14%  Similarity=0.214  Sum_probs=59.4

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEecc-CC-CeeEEEeCCEECCCCCeE---EEecCC---EEEEEEccCCCCCCeE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PP-PTVKWYKGNRELSKRDYS---MSYSDG---VVSMEIIDCKPEDSGE  126 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~---~~~~~~---~~~l~i~~~~~~d~G~  126 (168)
                      ..+|.+........+..|+.+.|.|.+.|. |. |.+.|++++..+......   ....++   ...|.|.++...|+|.
T Consensus       111 ~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  190 (212)
T 1nfd_E          111 KSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNR  190 (212)
T ss_dssp             CBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSC
T ss_pred             CCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCe
Confidence            356777654444445579999999999987 54 799999999887542110   000111   1248888999999999


Q ss_pred             EEEEEEeCCcce
Q psy12421        127 YKCVATNKHGTD  138 (168)
Q Consensus       127 Y~C~a~n~~g~~  138 (168)
                      |+|.|.|..+..
T Consensus       191 Y~C~a~n~~~~~  202 (212)
T 1nfd_E          191 VSCQVTHEGETV  202 (212)
T ss_dssp             EEEEEECTTTTC
T ss_pred             EEEEEEeCCceE
Confidence            999999987763

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.10  E-value=1.6e-09  Score=67.06  Aligned_cols=75  Identities=24%  Similarity=0.426  Sum_probs=55.7

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc--CCCeeEEEeCC--E----ECC-CCCeEEEe--cCCEEEEEEccCCCCCCeEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGN--R----ELS-KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~--~----~~~-~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +...+....+.+|+++.|.|.+.+.  +.+.+.|+++.  .    .+. ..++....  ......|.|.+++.+|+|.|.
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~   82 (111)
T 2ywz_A            3 VDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETVDKGSKSFSLRISDLRVEDSGTYK   82 (111)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEEeCCCCEEEEEECCCChhcCEEEE
Confidence            4456667889999999999999876  57899999852  2    121 13343322  234568999999999999999


Q ss_pred             EEEEeC
Q psy12421        129 CVATNK  134 (168)
Q Consensus       129 C~a~n~  134 (168)
                      |.+.|.
T Consensus        83 C~~~~~   88 (111)
T 2ywz_A           83 CQADYS   88 (111)
T ss_dssp             EEEEEC
T ss_pred             EEEEcC
Confidence            999983

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.10  E-value=1.6e-09  Score=69.34  Aligned_cols=94  Identities=18%  Similarity=0.347  Sum_probs=62.9

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCEE----CC--C----CCeEEE-----ecCCEEEEEEccCCCC
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRE----LS--K----RDYSMS-----YSDGVVSMEIIDCKPE  122 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~----~~--~----~~~~~~-----~~~~~~~l~i~~~~~~  122 (168)
                      .+...+....+.+|++++|.|.+.+. +.+.+.||++...    +.  .    .++...     .......|.|.+++.+
T Consensus        10 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   89 (136)
T 2d9c_A           10 QVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPA   89 (136)
T ss_dssp             CEECCCSEEEEETTSCEEECCEESCCCSCCCCEEEETTTSSCEEEEESSSCCCSSBCCSSCSSSSSCCBCCEEESSCCTT
T ss_pred             EEEecCcEEEEcCCCCEEEEEEEcCCCCCceEEEEeecCCCeEEEEEcCCCcccceeeeeeeccCCCCEEEEEECCCCHH
Confidence            34445566788999999999999875 5678999997621    10  0    011100     0112347999999999


Q ss_pred             CCeEEEEEEEeCCcc--eE----EEEEEEEeeCCCc
Q psy12421        123 DSGEYKCVATNKHGT--DE----TNCVVIVESEEES  152 (168)
Q Consensus       123 d~G~Y~C~a~n~~g~--~~----~~~~l~v~~~p~~  152 (168)
                      |+|.|.|.+.+..+.  ..    ....|.|...|..
T Consensus        90 DsG~Y~C~~~~~~~~~~~~~~~g~~t~L~V~~~~s~  125 (136)
T 2d9c_A           90 DAGTYYCVKFRKGSPDDVEFKSGAGTELSVRAKPSA  125 (136)
T ss_dssp             TCEEEEEEEEECCSSSCEEEEECCCEEEEEECCCCC
T ss_pred             HCEEEEEEEEeCCCCcccceeeCCCeEEEEEeCCCC
Confidence            999999999886431  11    3467888776644

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.09  E-value=2e-10  Score=77.44  Aligned_cols=106  Identities=16%  Similarity=0.226  Sum_probs=66.9

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceeccCc-------ceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRREP-------LQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP   86 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~   86 (168)
                      ...|.+.+++..|.|.  |.+.   +.+...       +.+.+.  ....+|.+..        .+..+.|.|.+.+.|.
T Consensus        65 ngsL~I~~v~~~DsG~--Y~c~---~~n~~g~~~~~~~~~L~V~--~~~~~P~i~~--------~~~~v~L~C~~~~~p~  129 (182)
T 1hnf_A           65 NGTLKIKHLKTDDQDI--YKVS---IYDTKGKNVLEKIFDLKIQ--ERVSKPKISW--------TCINTTLTCEVMNGTD  129 (182)
T ss_dssp             TSCEEECSCCGGGCEE--EEEE---EEETTSCEEEEEEEEEEEE--CCCCCCEEEE--------ETTTTEEEEECSSCSS
T ss_pred             CCCEEECCCChhhCEE--EEEE---EEeCCCceeEEEEEEEEEc--CcCCCCEEEE--------ccCcEEEEeEccCCCC
Confidence            4467788888888666  4222   222211       112221  1123444433        2347899999999999


Q ss_pred             CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         87 PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        87 p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      |.+.|++++..+..       ...  .+.+. ....|+|.|+|.|.|..|.......+
T Consensus       130 ~~~~W~~~g~~l~~-------~~~--~i~~~-~~~~d~G~Y~C~a~N~~~~~~s~~~~  177 (182)
T 1hnf_A          130 PELNLYQDGKHLKL-------SQR--VITHK-WTTSLSAKFKCTAGNKVSKESSVEPV  177 (182)
T ss_dssp             CEEEEEESSCEEEE-------ESS--CEEEE-CCSCEEEEEEEEEECSSCEEEEEEEE
T ss_pred             CEEEEEECCEECCC-------CCc--EEEEe-cccCCCcEEEEEEEeCCCCcEEccee
Confidence            99999999877611       111  23332 24789999999999999988776655

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.09  E-value=6e-11  Score=82.31  Aligned_cols=122  Identities=13%  Similarity=0.132  Sum_probs=75.4

Q ss_pred             ceeEEEEeCCCCCCCCCCccccee---ccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEec-cC-CCeeEE
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVR---RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KP-PPTVKW   91 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p-~p~i~W   91 (168)
                      +.+.+++..|.|.  |.|......   ......+.+.  ....+|.+........+..|+.+.|.|.+.| .| .+.+.|
T Consensus        96 L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~l~V~--~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W  171 (237)
T 3sob_L           96 LTISSLQPEDFAT--YYCQQSYTTPPTFGQGTKVEIK--RTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQW  171 (237)
T ss_dssp             EEESSCCGGGCEE--EEEEECSSSSCEECCCEEEEEE--CCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEECCCChhhCeE--EEEeeccCCceEEcCcEEEEEe--cCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEE
Confidence            5566777778665  432221111   1111222222  2356777766555555556889999999988 44 589999


Q ss_pred             EeCCEECCCCC-e--EE-EecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         92 YKGNRELSKRD-Y--SM-SYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        92 ~~~~~~~~~~~-~--~~-~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      ++++..+.... .  .. ...++    ...|.|......|.|.|+|.|.|.........
T Consensus       172 ~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  230 (237)
T 3sob_L          172 KVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTK  230 (237)
T ss_dssp             EETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEE
T ss_pred             EECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceee
Confidence            99999876421 0  00 00111    23588888888999999999999876544333

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.09  E-value=9.6e-10  Score=77.53  Aligned_cols=91  Identities=18%  Similarity=0.215  Sum_probs=63.9

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC--------------CCCCeEE--EecCCEEEEEEccC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL--------------SKRDYSM--SYSDGVVSMEIIDC  119 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~--------------~~~~~~~--~~~~~~~~l~i~~~  119 (168)
                      ..+...+....+.+|+++.|.|.+.+.|.+.+.|++..  ..+              ...++.+  ....+..+|.|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            34555666788999999999999999999999999842  100              0122222  12344567999999


Q ss_pred             CCCCCeEEEEEEEeCCcce----EEEEEEEEee
Q psy12421        120 KPEDSGEYKCVATNKHGTD----ETNCVVIVES  148 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~~----~~~~~l~v~~  148 (168)
                      +.+|+|.|.|.+.|..+..    .....|.|..
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~  116 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSP  116 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeC
Confidence            9999999999999976532    1233566654

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.09  E-value=7.2e-10  Score=78.00  Aligned_cols=73  Identities=18%  Similarity=0.340  Sum_probs=53.5

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC------------------CCCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL------------------SKRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~------------------~~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++  +..+                  ...++.+...  .....|.|.+
T Consensus       140 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  219 (256)
T 3ux9_B          140 ESGGGLVQPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMNS  219 (256)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCEEEEEEECSSSSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeEEcCCCeEEEEEEEeCCcccccEEEEEEECCCCCcEEEEEEccCCCceecCccccceEEEEecCCCCEEEEEECC
Confidence            44456688999999999999876  789999986  2211                  0113333322  3455799999


Q ss_pred             CCCCCCeEEEEEEEeCC
Q psy12421        119 CKPEDSGEYKCVATNKH  135 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~  135 (168)
                      ++.+|+|.|.|.+.|..
T Consensus       220 v~~~DsG~Y~C~~~~~~  236 (256)
T 3ux9_B          220 LRAEDTAVYYCARYIDF  236 (256)
T ss_dssp             CCGGGCEEEEEEEEETT
T ss_pred             CChhhCEEEEEEEEcCC
Confidence            99999999999999963

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.09  E-value=3.2e-10  Score=76.85  Aligned_cols=86  Identities=12%  Similarity=0.167  Sum_probs=63.9

Q ss_pred             cCCeEEecCCcEEEEEEEec-cCCCeeEEEeCCEECC---C----------------CCeEEEecCCEEEEEEccCCCCC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELS---K----------------RDYSMSYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~---~----------------~~~~~~~~~~~~~l~i~~~~~~d  123 (168)
                      +....+.+|+++.|.|.+.+ .+.+.+.|++++..+.   .                .+..+ ..++  +|.|.+++.+|
T Consensus         5 p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~-~~~~--sL~I~~v~~~D   81 (193)
T 2if7_A            5 PLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNF-TQSY--SLQLSNLKMED   81 (193)
T ss_dssp             CEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEE-CTTC--CEEECSCCGGG
T ss_pred             CeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEE-CCCe--EEEECCCCccc
Confidence            34567889999999999875 5567999999876431   1                01111 1233  79999999999


Q ss_pred             CeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421        124 SGEYKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus       124 ~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      +|.|.|.+.|..|.....+.|.|..++..
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~  110 (193)
T 2if7_A           82 TGSYRAQISTKTSAKLSSYTLRILRQLRN  110 (193)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEECCCEE
T ss_pred             CceEEEEEEecCCCeEEEEEEEEEccCCC
Confidence            99999999999887777788888765443

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.09  E-value=3.8e-11  Score=86.58  Aligned_cols=130  Identities=11%  Similarity=0.085  Sum_probs=77.6

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccC-cceeeEeeecccCCCeE--EeecCCeEEecCCcEEEEEEE-eccCCCeeEE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRRE-PLQITFWQETVESAPNF--TFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKW   91 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~p~~--~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W   91 (168)
                      .|.+.+++..|.|.  |.|.   +.+.. ..........+..+|.+  ...+.......|+.+.|.|.+ .|.|.|.+.|
T Consensus        75 sL~I~~v~~~D~G~--Y~C~---a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W  149 (308)
T 4fom_A           75 TITLHNIGFSDSGK--YICK---AVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDW  149 (308)
T ss_dssp             CEEECSCCGGGCEE--EEEE---EEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEE
T ss_pred             EEEEccCCHHHCEE--EEEE---EeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEE
Confidence            47778888888666  4332   22211 11111111122223332  233444555568899999975 6899999999


Q ss_pred             EeCCEECCCCCeEEEe--cCCEEEEEEccCCCCCCeEEEEEEEeCCcceE--EEEEEEEeeCC
Q psy12421         92 YKGNRELSKRDYSMSY--SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE--TNCVVIVESEE  150 (168)
Q Consensus        92 ~~~~~~~~~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~p  150 (168)
                      ++++..+.........  ......|.|......|.|.|+|.|.|..|...  .++.|.|..+|
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P  212 (308)
T 4fom_A          150 EGDLGEMESTTTSFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAP  212 (308)
T ss_dssp             CCCSSBCCEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEE
T ss_pred             EECCcccccccceeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCC
Confidence            9998766432111000  00123589999999999999999999877644  44455555544

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.09  E-value=6.8e-10  Score=74.14  Aligned_cols=90  Identities=18%  Similarity=0.326  Sum_probs=62.1

Q ss_pred             eEEecCCcEEEEEEEeccCCC--eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ..+.+|+.+.|.|.+.+.|.|  .+.|++++..+.....    ......|.|.  +..|+|.|+|.+.|.   ......|
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~----~~~~~~l~i~--~~~d~G~Y~C~~~n~---~~~~~~l   78 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL----PGQKTEFKVD--SDDQWGEYSCVFLPE---PMGTANI   78 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC----CCSEEEEEEC--GGGCCEEEEEEEEST---TSCEEEE
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccc----cCCcEEEEEe--chhhCeEEEEEEECC---cCcEEEE
Confidence            467789999999999988877  8999999987765331    1222346555  688999999999983   2356677


Q ss_pred             EEeeCCCchhhhhhhhhcccCCC
Q psy12421        145 IVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       145 ~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      .|..+|......  ....+.+|+
T Consensus        79 ~V~~~P~~~~~~--~~~~~~~g~   99 (184)
T 3b5h_A           79 QLHGPPRVKAVK--SSEHINEGE   99 (184)
T ss_dssp             EECCSCCCEESC--SEEEECTTS
T ss_pred             EEecCCceeecC--CCcEEcCCC
Confidence            777766543322  222455554

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.08  E-value=5.4e-10  Score=78.16  Aligned_cols=87  Identities=22%  Similarity=0.353  Sum_probs=61.1

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------------------CCCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------------------SKRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~~--~~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.|  .+.+.|+++.  ..+                  ...++.+..  ..+..+|.|.+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (247)
T 2ghw_B            8 QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYLQMNS   87 (247)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEEEECc
Confidence            33567889999999999999987  6889999842  100                  113343333  23456899999


Q ss_pred             CCCCCCeEEEEEEEeCCcce--EEEEEEEEeeC
Q psy12421        119 CKPEDSGEYKCVATNKHGTD--ETNCVVIVESE  149 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~  149 (168)
                      ++.+|+|.|.|.+.|..+..  .....|.|...
T Consensus        88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~  120 (247)
T 2ghw_B           88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSG  120 (247)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEECCCEEEEECSC
T ss_pred             CCHHHCEEEEEeeeccCCccccCCceEEEEecc
Confidence            99999999999999984332  22346677654

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.08  E-value=6.1e-10  Score=77.96  Aligned_cols=89  Identities=16%  Similarity=0.310  Sum_probs=64.5

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCe-----eEEEeCCEECCC---------CCe-------EEE---ecCCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPT-----VKWYKGNRELSK---------RDY-------SMS---YSDGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~-----i~W~~~~~~~~~---------~~~-------~~~---~~~~~~~l~i~~~  119 (168)
                      +....+.+|+++.|.|.+.|.|.+.     +.|++++.....         ...       .+.   ...+..+|.|.++
T Consensus        10 p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~v   89 (248)
T 3pv7_A           10 GGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGI   89 (248)
T ss_dssp             TSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEESSC
T ss_pred             CCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeCCC
Confidence            3345788999999999999988876     999986432110         000       000   0112235999999


Q ss_pred             CCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421        120 KPEDSGEYKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      +..|+|.|.|.+.|..+.......|.|..+|..
T Consensus        90 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v  122 (248)
T 3pv7_A           90 QLEEAGEYRCEVVVTPLKAQGTVQLEVVASPAS  122 (248)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEE
T ss_pred             CHHHCeEEEEEEEeCCccceeEEEEEEecCCce
Confidence            999999999999999888888888888876653

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.08  E-value=1.1e-09  Score=74.86  Aligned_cols=84  Identities=15%  Similarity=0.158  Sum_probs=61.5

Q ss_pred             cCCeEEecCCcEEEEEEEeccC---CCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP---PPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      +....+.+|+++.|.|.+.+.|   .+.+.|++++  ..+             ...++......+...|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G   86 (212)
T 1q0x_L            7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEA   86 (212)
T ss_dssp             CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEeeCCEEEEEECCCCccCCE
Confidence            6667889999999999999877   4789999853  211             123444444455668999999999999


Q ss_pred             EEEEEEEeCCcceE-EEEEEEEe
Q psy12421        126 EYKCVATNKHGTDE-TNCVVIVE  147 (168)
Q Consensus       126 ~Y~C~a~n~~g~~~-~~~~l~v~  147 (168)
                      .|.|.+.|..+... ....|.|.
T Consensus        87 ~Y~C~~~~~~~~~~~~~~~l~V~  109 (212)
T 1q0x_L           87 IYFCALWSNNKLVFGGGTKLTVL  109 (212)
T ss_dssp             EEEEEEECSSCEEECCCEEEEEC
T ss_pred             EEEEEEecCchhhcCCCeEEEEe
Confidence            99999999876422 23355553

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.08  E-value=4.7e-10  Score=78.42  Aligned_cols=78  Identities=17%  Similarity=0.275  Sum_probs=58.2

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe----------------CCEECCC----CCeEEEe-cCCEEEEEEc
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK----------------GNRELSK----RDYSMSY-SDGVVSMEII  117 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~----------------~~~~~~~----~~~~~~~-~~~~~~l~i~  117 (168)
                      .+...+....+.+|+++.|.|.+.+.+.+.+.|++                ++.....    .++.+.. ..+..+|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~   82 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTVT   82 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEEC
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEEC
Confidence            45556667889999999999999999999999998                2221111    2233322 2445689999


Q ss_pred             cCCCCCCeEEEEEEEeCCc
Q psy12421        118 DCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~~g  136 (168)
                      +++.+|+|.|.|.+.|..+
T Consensus        83 ~v~~~D~G~Y~C~~~~~~~  101 (246)
T 4dzb_B           83 SAHPEDSSFYICSARTSGD  101 (246)
T ss_dssp             SCCGGGCEEEEEEECCSSG
T ss_pred             CCCHHHCEEEEEEEecCCC
Confidence            9999999999999987644

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.08  E-value=3.7e-10  Score=78.52  Aligned_cols=90  Identities=19%  Similarity=0.259  Sum_probs=60.2

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC----------------CCCCeEEEe-cCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL----------------SKRDYSMSY-SDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~----------------~~~~~~~~~-~~~~~~l~i~~~~  120 (168)
                      +...+....+.+|+++.|.|. .+.|.+.+.|+++.  ..+                ...++.+.. .....+|.|.+++
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~   81 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELAT   81 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSCC
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecCC
Confidence            445666788999999999999 78899999999851  110                122333332 2234479999999


Q ss_pred             CCCCeEEEEEEEeCCcce-----EEEEEEEEeeCC
Q psy12421        121 PEDSGEYKCVATNKHGTD-----ETNCVVIVESEE  150 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g~~-----~~~~~l~v~~~p  150 (168)
                      .+|+|.|.|.+.|..|..     .....|.|...+
T Consensus        82 ~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~  116 (238)
T 2p1y_A           82 PSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSA  116 (238)
T ss_dssp             GGGCEEEEEEEEC------CEEECCCEEEEEECCC
T ss_pred             cccCeeEEEEEEeCCCccccceeCCCeEEEEeccC
Confidence            999999999999986531     123456665544

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.08  E-value=2e-10  Score=83.10  Aligned_cols=131  Identities=11%  Similarity=0.077  Sum_probs=84.0

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEe-ccCCCeeEEEeC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKG   94 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~   94 (168)
                      .|.+.+++..|.|.  |.|....  .............+..+|.+........+..++...+.|.+. +.|.|.+.|+++
T Consensus        80 sL~I~~v~~~D~G~--Y~C~v~~--~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~  155 (313)
T 4fqp_A           80 SLRMFGLRVEDEGN--YTCLFVT--FPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSD  155 (313)
T ss_dssp             CEEECSCCGGGCEE--EEEEEEC--SSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEET
T ss_pred             EEEECcCChhhCEE--EEEEEee--ccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecC
Confidence            47788888888666  5332211  111112222223455678877777777777888899999865 789999999999


Q ss_pred             CEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceE--EEEEEEEeeCC
Q psy12421         95 NRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDE--TNCVVIVESEE  150 (168)
Q Consensus        95 ~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~v~~~p  150 (168)
                      +..+..........++    .+.|.|......|.|.|+|.|.|..+...  ....|.|..+|
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P  217 (313)
T 4fqp_A          156 LGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPP  217 (313)
T ss_dssp             TCCEEEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEE
T ss_pred             CccccccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCC
Confidence            8755332111111122    12588888889999999999999876643  34455555544

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.08  E-value=8.4e-10  Score=77.57  Aligned_cols=93  Identities=17%  Similarity=0.168  Sum_probs=66.7

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccC-----CCeeEEEeCCE--EC-----------C--CCCeEEEecCCEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKP-----PPTVKWYKGNR--EL-----------S--KRDYSMSYSDGVVSME  115 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-----~p~i~W~~~~~--~~-----------~--~~~~~~~~~~~~~~l~  115 (168)
                      ..+.+...+....+.+|+++.|.|.+.+.|     .+.+.|++++.  .+           .  ..++......+..+|.
T Consensus        33 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~  112 (252)
T 3bkj_L           33 SDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGSGTDFTLR  112 (252)
T ss_dssp             -CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEE
T ss_pred             cccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEccCCEEEEE
Confidence            345666667778899999999999999887     68999998541  11           0  2344444445566899


Q ss_pred             EccCCCCCCeEEEEEEEeCCcceE-EEEEEEEee
Q psy12421        116 IIDCKPEDSGEYKCVATNKHGTDE-TNCVVIVES  148 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~v~~  148 (168)
                      |.+++.+|+|.|.|.+.|..+... ....|.|..
T Consensus       113 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~  146 (252)
T 3bkj_L          113 ISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKR  146 (252)
T ss_dssp             ESSCCGGGCEEEEEEECSBSSCEECCCEEEEECC
T ss_pred             ECCCCcccCEEEEEEEEcCCccEECCCEEEEEeC
Confidence            999999999999999998765322 223566644

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=99.08  E-value=7.2e-10  Score=68.56  Aligned_cols=77  Identities=19%  Similarity=0.251  Sum_probs=57.6

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-----EC----------CCCCeEEEecCCEEEEEEccCCCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-----EL----------SKRDYSMSYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-----~~----------~~~~~~~~~~~~~~~l~i~~~~~~  122 (168)
                      +.+...+....+.+|++++|.|.+.+.+.+.+.|++...     .+          ...++......+...|.|.+++.+
T Consensus         5 ~~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~~~   84 (111)
T 1i3g_L            5 IVLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSGSGTDFTLTISNVQSE   84 (111)
T ss_dssp             CCEEESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGG
T ss_pred             ceEEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEcCCCEEEEEECCCCHH
Confidence            344555666788899999999999888788999998541     11          023444443445568999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12421        123 DSGEYKCVATNK  134 (168)
Q Consensus       123 d~G~Y~C~a~n~  134 (168)
                      |+|.|.|.+.+.
T Consensus        85 DsG~Y~C~~~~~   96 (111)
T 1i3g_L           85 DLADYFCQQYSS   96 (111)
T ss_dssp             GCSEEEEEECSS
T ss_pred             HCEEEEEEEecC
Confidence            999999999875

>3rrq_A Protein PD-1, programmed cell death protein 1; programmed death-1, costimulatory, immune system; 2.10A {Homo sapiens}

Probab=99.08  E-value=7e-10  Score=70.57  Aligned_cols=91  Identities=18%  Similarity=0.315  Sum_probs=64.3

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccC-CCeeEEEeC--CEE---C-----------CCCCeEEE--ecCCEEEEEEccCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKG--NRE---L-----------SKRDYSMS--YSDGVVSMEIIDCKP  121 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~--~~~---~-----------~~~~~~~~--~~~~~~~l~i~~~~~  121 (168)
                      ...+....+.+|++++|.|...+.. ...+.||+.  +..   +           ...++.+.  ...+..+|.|.+++.
T Consensus         5 ~Q~P~~~~v~~G~~vtL~C~~s~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~~~   84 (129)
T 3rrq_A            5 TFSPALLVVTEGDNATFTCSFSNTSESFVLNWYRMSPSNQTDKLAAFPEDRSQPGQDCRFRVTQLPNGRDFHMSVVRARR   84 (129)
T ss_dssp             EEECSEEEEETTSCEEEEEECCCCC-CEEEEEEEEESTTSCEEEEEETC--------CCEEEEECTTSSEEEEEESSCCG
T ss_pred             EECCCEEEEeCCCCEEEEeEecCCCCCcEEEEeEeCCCCCccEEEEEcCCccCCCcCCcEEEEEcCCCCEEEEEECCCCh
Confidence            3456678899999999999987754 567899974  210   1           01234333  233456899999999


Q ss_pred             CCCeEEEEEEEeCCcce----EEEEEEEEeeCCC
Q psy12421        122 EDSGEYKCVATNKHGTD----ETNCVVIVESEEE  151 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~----~~~~~l~v~~~p~  151 (168)
                      +|+|.|.|.+.|..+..    .....|.|.+.+.
T Consensus        85 ~Dsg~Y~C~~~~~~~~~~~~~s~~~~L~V~~~~~  118 (129)
T 3rrq_A           85 NDSGTYLCGAISLAPKLQIKESLRAELRVTERRA  118 (129)
T ss_dssp             GGCEEEEEEEEECGGGCEEEECCCEEEEEECCCC
T ss_pred             hHCEEEEEEEEecCCCceeeEeceEEEEEecCcc
Confidence            99999999999987765    3456788876543

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=99.08  E-value=4.9e-10  Score=71.42  Aligned_cols=86  Identities=21%  Similarity=0.367  Sum_probs=59.5

Q ss_pred             eecCCeEEecCCcEEEEEEEec---cCCCeeEEEeCCEECC-----------------------------C--CCeEEEe
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSG---KPPPTVKWYKGNRELS-----------------------------K--RDYSMSY  107 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g---~p~p~i~W~~~~~~~~-----------------------------~--~~~~~~~  107 (168)
                      ..+....+.+|+++.|.|.+..   .+.+.+.|+++.....                             .  .+..+ .
T Consensus         9 ~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~-~   87 (135)
T 1xt5_A            9 TTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV-A   87 (135)
T ss_dssp             CSCSEEEEETTSCEEECCEEEEETCCSCCEEEEEEESSSSSEEEEEEEEECCCCTTCCCCTTSEEEEECGGGTTTEEE-S
T ss_pred             CCCceEEEeCCCCEEEeeEeecCCCCCccEEEEEeeCCCCCceEEEEeccccccccccccccccccccChhhcCcEEE-e
Confidence            3445577889999999999753   6788999998643210                             0  11111 1


Q ss_pred             cCCEEEEEEccCCCCCCeEEEEEEEeC-----CcceEEEEEEEEee
Q psy12421        108 SDGVVSMEIIDCKPEDSGEYKCVATNK-----HGTDETNCVVIVES  148 (168)
Q Consensus       108 ~~~~~~l~i~~~~~~d~G~Y~C~a~n~-----~g~~~~~~~l~v~~  148 (168)
                      ..+..+|.|.+++.+|+|.|.|.+.|.     .|.....+.|.|..
T Consensus        88 ~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~g~~~~~~~L~V~g  133 (135)
T 1xt5_A           88 NLAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTG  133 (135)
T ss_dssp             CTTSCCEEECSCCGGGCEEEEEEEECSSCCSGGGEEEEEEEEEEET
T ss_pred             cCCCCeEEECCCChhhCcEEEEEEEcCCccccccccceeEEEEEec
Confidence            112236999999999999999999985     34455777777754

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=99.07  E-value=2.2e-10  Score=83.17  Aligned_cols=94  Identities=5%  Similarity=0.001  Sum_probs=69.3

Q ss_pred             ecCCeEEecCCcEEEEEEEecc-----CCCeeEEEeCCEECCCCCeEEEecCC-EEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGK-----PPPTVKWYKGNRELSKRDYSMSYSDG-VVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~-----p~p~i~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      .+.+..+..|+++.|.|.+.+.     |.+.+.|.+++..+...+......+. ...|.|.++...|+|.|.|.+.+..+
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~~~~~d~g~y~c~~~~~~~   85 (313)
T 2d9q_B            6 SVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSLNWGNSL   85 (313)
T ss_dssp             EESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEEESSSSE
T ss_pred             ECCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCccceEEEecCeEEEEEEEeccCCCccceEEeeecCCCc
Confidence            3456788899999999999987     67899999999877544222111221 14799999999999999998876555


Q ss_pred             ceEEEEEEEEeeCCCchhhh
Q psy12421        137 TDETNCVVIVESEEESKEQQ  156 (168)
Q Consensus       137 ~~~~~~~l~v~~~p~~~~~~  156 (168)
                      .....+.|.+..+|..|...
T Consensus        86 ~~~~~~~l~v~~~P~~P~~l  105 (313)
T 2d9q_B           86 QILDQVELRAGYPPAIPHNL  105 (313)
T ss_dssp             EEEEEEEEEECCCCCCCEEE
T ss_pred             eeEEEEEEccCCCCCCCccc
Confidence            44556778887777666543

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.07  E-value=1e-09  Score=75.37  Aligned_cols=86  Identities=21%  Similarity=0.297  Sum_probs=60.5

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEECC------------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRELS------------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~~------------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++  +..+.                  ..++.+...  .+..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (219)
T 1c1e_H            6 QSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQINN   85 (219)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEECS
T ss_pred             CCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEECC
Confidence            45567788999999999999865  789999986  32110                  123333221  3345899999


Q ss_pred             CCCCCCeEEEEEEEeCCcce----EEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHGTD----ETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~----~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|..+..    .....|.|..
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~  119 (219)
T 1c1e_H           86 LKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSS  119 (219)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEECCCEEEEECC
T ss_pred             CCcccCEEEEEEEeccCcccceeecCceEEEEec
Confidence            99999999999999987422    1245666665

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.07  E-value=2.1e-10  Score=76.44  Aligned_cols=81  Identities=16%  Similarity=0.167  Sum_probs=60.4

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-------------CCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-------------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      ...+.+|+.++|.|.+.+ |.+.+.|++++..+..             .+..+...++  +|.|.+++..|+|.|.|.+.
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~--sL~I~~v~~~DsG~Y~C~~~   80 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG--SLTIYNLTSSDEDEYEMESP   80 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTC--CEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCC--eEEECCCChhhCceEEEEEe
Confidence            356778999999999844 8899999998764311             1112212334  79999999999999999999


Q ss_pred             eCCcceEEEEEEEEeeCCC
Q psy12421        133 NKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~~p~  151 (168)
                      |..|  ...+.|.|..++.
T Consensus        81 n~~~--~~~~~L~V~~~~~   97 (171)
T 1ccz_A           81 NITD--TMKFFLYVLEMVS   97 (171)
T ss_dssp             TCCS--CEEEEEEEECCCC
T ss_pred             CCCC--cEEEEEEEECcCC
Confidence            9888  5677788876544

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.07  E-value=4.8e-10  Score=90.15  Aligned_cols=99  Identities=14%  Similarity=0.348  Sum_probs=75.2

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeE-EE--eCCEECCCCCeEEEe-cCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVK-WY--KGNRELSKRDYSMSY-SDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~-W~--~~~~~~~~~~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      .+|.|. .+.+..+.+|+++.|.|.+.|.|.|.+. |+  +++..+......... ......|.|.++...|.|.|+|.|
T Consensus       164 ~~p~~~-~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A  242 (731)
T 2v5y_A          164 RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMI  242 (731)
T ss_dssp             SSCEEC-CCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEE
T ss_pred             cccccc-cccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEE
Confidence            567776 5678899999999999999999999988 88  666655332211111 111247999999999999999999


Q ss_pred             EeCCcc-eEEEEEEEEeeCCCchhh
Q psy12421        132 TNKHGT-DETNCVVIVESEEESKEQ  155 (168)
Q Consensus       132 ~n~~g~-~~~~~~l~v~~~p~~~~~  155 (168)
                      .|..|. ......|.|..+|..+..
T Consensus       243 ~n~~G~~~s~~~~l~V~~~P~~~~~  267 (731)
T 2v5y_A          243 RTEGGVGISNYAELVVKEPPVPIAP  267 (731)
T ss_dssp             EETTEEEECCCEEEEEECCCCBSSC
T ss_pred             ECCCCCcceeeEEEEEecCCCCCCC
Confidence            999998 666778888887765543

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=99.07  E-value=2.2e-09  Score=77.50  Aligned_cols=91  Identities=15%  Similarity=0.237  Sum_probs=68.4

Q ss_pred             eecCCeEEecCCcEEEEEEEecc-------CCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGK-------PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~-------p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ..+.+..+..|+++.|.|.+.+.       |.|.+.|++++..+...++.+. .+....|.|.++...+ |.|+|.|.|.
T Consensus         9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~~~~~~-~~~~~~L~i~~~~~~~-g~Y~C~a~~~   86 (303)
T 1i1r_A            9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTII-NRTASSVTFTDIASLN-IQLTCNILTF   86 (303)
T ss_dssp             EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEE-ETTEEEEEECSCCCSE-EEEEEEEEET
T ss_pred             EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChhheeee-CCcEEEEEEcCcCCCc-eEEEEecccC
Confidence            46677889999999999999864       7899999999998865544443 3334579999999884 9999999884


Q ss_pred             Ccce---EEEEEEEEeeCCCchhh
Q psy12421        135 HGTD---ETNCVVIVESEEESKEQ  155 (168)
Q Consensus       135 ~g~~---~~~~~l~v~~~p~~~~~  155 (168)
                       |..   .....|.+..+|..|..
T Consensus        87 -g~~~~~~~~~~l~v~~~P~~P~~  109 (303)
T 1i1r_A           87 -GQLEQNVYGITIISGLPPEKPKN  109 (303)
T ss_dssp             -TTEEEEEEEEEEEEECCCCCCEE
T ss_pred             -CCcceEEEEEEEeccCCCCCCee
Confidence             432   23455667777766553

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.07  E-value=8e-10  Score=77.86  Aligned_cols=79  Identities=18%  Similarity=0.260  Sum_probs=58.7

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEec--cCCCeeEEEeCC--EEC------------------CCCCeEEE--ecCCE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSG--KPPPTVKWYKGN--REL------------------SKRDYSMS--YSDGV  111 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g--~p~p~i~W~~~~--~~~------------------~~~~~~~~--~~~~~  111 (168)
                      .+|.+...+....+.+|+++.|.|.+.+  .+.+.+.|++..  ..+                  ...++.+.  ...+.
T Consensus         5 ~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   84 (256)
T 3juy_B            5 HHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANT   84 (256)
T ss_dssp             --CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTE
T ss_pred             cceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCCE
Confidence            3567777888899999999999999988  478899999742  100                  01233333  22445


Q ss_pred             EEEEEccCCCCCCeEEEEEEEeC
Q psy12421        112 VSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       112 ~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+|.|.+++.+|+|.|.|.+.|.
T Consensus        85 ~~L~I~~v~~~DsG~Y~C~~~~~  107 (256)
T 3juy_B           85 AYMELRSLRSADTAVYYCARVGE  107 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCC
T ss_pred             EEEEECCCCcccCEEEEEeEEec
Confidence            67999999999999999999987

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.06  E-value=2.3e-10  Score=80.38  Aligned_cols=118  Identities=19%  Similarity=0.221  Sum_probs=71.8

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcce----eeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CC-Cee
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQ----ITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PP-PTV   89 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i   89 (168)
                      .|.+.+++..|.|.  |.|.   +.+.....    ..+.......+|.+...........|+.+.|.|.+.|. |. +.+
T Consensus       114 ~L~I~~v~~~D~G~--Y~C~---a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v  188 (254)
T 2c1o_A          114 TLKISRVEAEDLGI--YYCV---QGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINV  188 (254)
T ss_dssp             EEEESSCCGGGCSE--EEEE---ECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEE
T ss_pred             EEEECcCCcccCEE--EEEE---EEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEE
Confidence            35566777777655  4322   22221111    11211222346777655444333468899999999884 44 469


Q ss_pred             EEEeCCEECCCC-CeEEE---ecCC----EEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         90 KWYKGNRELSKR-DYSMS---YSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        90 ~W~~~~~~~~~~-~~~~~---~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      .|++++..+... .....   ..++    ...|.|.++...|+|.|+|.|.|.....
T Consensus       189 ~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          189 KWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             EEEESSSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             EEEECCCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCC
Confidence            999999877554 11100   0111    2469999999999999999999987654

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.06  E-value=1.1e-09  Score=74.43  Aligned_cols=84  Identities=17%  Similarity=0.207  Sum_probs=56.7

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCe---eEEEeCCEECCCCCeE-----------------EEe-----cCCEEEEEEcc
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPT---VKWYKGNRELSKRDYS-----------------MSY-----SDGVVSMEIID  118 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~---i~W~~~~~~~~~~~~~-----------------~~~-----~~~~~~l~i~~  118 (168)
                      +....+.+|+++.|.|.+.+.|.+.   +.|+|++.........                 ...     ..+..+|.|.+
T Consensus         6 p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~   85 (218)
T 4frw_A            6 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   85 (218)
T ss_dssp             CSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEESS
T ss_pred             CCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEee
Confidence            4456788999999999999988764   8999976533211000                 000     11123699999


Q ss_pred             CCCCCCeEEEEEEEeCCcceEEE-EEEEEe
Q psy12421        119 CKPEDSGEYKCVATNKHGTDETN-CVVIVE  147 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~~~~-~~l~v~  147 (168)
                      ++..|+|.|.|.+.|..+..... ..+.+.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~  115 (218)
T 4frw_A           86 AVQADEGEYECRVSTFPAGSFQARLRLRVL  115 (218)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ccHHHCCceeEEEEeccCceeeeEEEEEEe
Confidence            99999999999999876654443 334443

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.06  E-value=3e-10  Score=77.60  Aligned_cols=71  Identities=21%  Similarity=0.422  Sum_probs=55.4

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EECC-------------CCCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +....+.+|+++.|.|.+.+.|.+.+.|+++.  ..+.             ..++.+....+...|.|.+++.+|+|.|.
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~   85 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEeeCCEEEEEECcCCcccCEEEE
Confidence            55678889999999999988888899999852  2210             23444444555668999999999999999


Q ss_pred             EEEEeC
Q psy12421        129 CVATNK  134 (168)
Q Consensus       129 C~a~n~  134 (168)
                      |.+.|.
T Consensus        86 C~~~n~   91 (212)
T 1nfd_E           86 CLSSYG   91 (212)
T ss_dssp             EEEEET
T ss_pred             EEEEcc
Confidence            999973

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.05  E-value=6.8e-10  Score=78.11  Aligned_cols=86  Identities=19%  Similarity=0.244  Sum_probs=60.3

Q ss_pred             CCeEEecCCcEEEEEEEecc--CCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeEE
Q psy12421         65 RPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      ....+.+|+++.|.|.+.+.  +.+.+.|+++.  ..+             ...++.........+|.|.+++.+|+|.|
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~DsG~Y   89 (256)
T 3ux9_B           10 PSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSGTSASLAITGLQSEDEADY   89 (256)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             CcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccCCEEEEEECCCChhhCEEE
Confidence            34678899999999999887  78899999842  111             11344444445566899999999999999


Q ss_pred             EEEEEeCCcce---EEEEEEEEeeCC
Q psy12421        128 KCVATNKHGTD---ETNCVVIVESEE  150 (168)
Q Consensus       128 ~C~a~n~~g~~---~~~~~l~v~~~p  150 (168)
                      .|.+.|..+..   .....|.|...+
T Consensus        90 ~C~~~~~~~~~~~~~~~~~l~V~~~~  115 (256)
T 3ux9_B           90 YCQVRDNNENEWVFGGGTKLTVLGSG  115 (256)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEC---
T ss_pred             EEEEEECCCCceEECCCEEEEEECCC
Confidence            99999976532   233466666544

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.05  E-value=3.2e-10  Score=77.48  Aligned_cols=119  Identities=14%  Similarity=0.156  Sum_probs=74.3

Q ss_pred             CceeEEEEeCCCCCCCCCCcccce---eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCC--eeE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQV---RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP--TVK   90 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~   90 (168)
                      .|.+.+++..|.|.  |.|.....   .......+.+  .....+|.+...+....+..|+.+.|.|.+.|.+++  .+.
T Consensus        72 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~l~V--~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~  147 (213)
T 3r06_A           72 SFTISSLESEDIGS--YYCQQYYNYPWTFGPGTKLEI--KRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVK  147 (213)
T ss_dssp             EEEESSCCGGGCSE--EEEEECSSSSCEECCCEEEEE--CCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEE
T ss_pred             EEEECCCCcccCEE--EEEecccCCceEEcCCceEEE--eccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEE
Confidence            46677778888666  43332211   1111222222  233567888776666666678889999999986643  899


Q ss_pred             EEeCCEECCCCC-eE--EE-ecCC----EEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         91 WYKGNRELSKRD-YS--MS-YSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        91 W~~~~~~~~~~~-~~--~~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      |++++..+.... ..  .. ..++    ...|.+......|.|.|+|.|.|.....
T Consensus       148 W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~  203 (213)
T 3r06_A          148 WKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTA  203 (213)
T ss_dssp             EEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS
T ss_pred             EEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCc
Confidence            999998876431 00  00 0111    1257777777888999999999986443

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.05  E-value=1.8e-10  Score=77.75  Aligned_cols=76  Identities=17%  Similarity=0.264  Sum_probs=59.1

Q ss_pred             ecCCeEEecCCcEEEEEE-EeccCC-CeeEEEeCCEECCC---CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         63 LLRPRVMQVRQTCKLLCC-LSGKPP-PTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~-~~g~p~-p~i~W~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      .+....+.+|+.+.|.|. +.+.|. +.+.|++++..+..   ........++  .|.|.+++..|+|.|+|.+.|..+.
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~~~~~~~~   91 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG--NLYIANVEASDKGNYSCFVSSPSIT   91 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTC--CEEESSCCGGGCEEEEEEEEEGGGT
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCC--eEEECcCCcccCeEEEEEEEecCCC
Confidence            445678999999999999 889998 99999999876631   2222222333  6999999999999999999997765


Q ss_pred             eEE
Q psy12421        138 DET  140 (168)
Q Consensus       138 ~~~  140 (168)
                      ...
T Consensus        92 ~~~   94 (201)
T 3s97_C           92 KSV   94 (201)
T ss_dssp             EEE
T ss_pred             cch
Confidence            443

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.05  E-value=4.1e-11  Score=83.16  Aligned_cols=87  Identities=18%  Similarity=0.248  Sum_probs=58.8

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCC--CeeEEEeCCEECCCCCeE---EEecC----CEEEEEEccCCCCCCeE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRDYS---MSYSD----GVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~---~~~~~----~~~~l~i~~~~~~d~G~  126 (168)
                      .+|.+...........|+.+.|.|.+.|.++  +.+.|++++..+......   ....+    ....|.|......|.|.
T Consensus       134 ~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  213 (234)
T 2j6e_L          134 AAPSVTLFPPSSEELQANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRS  213 (234)
T ss_dssp             CCCCCCEECCCHHHHTTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCC
T ss_pred             CCCcccccCCChhHhcCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCe
Confidence            4566554443333345889999999998544  389999999987543110   00111    12368888889999999


Q ss_pred             EEEEEEeCCcceEEEE
Q psy12421        127 YKCVATNKHGTDETNC  142 (168)
Q Consensus       127 Y~C~a~n~~g~~~~~~  142 (168)
                      |+|.|.|..+....++
T Consensus       214 Y~C~a~n~~~~~~~~~  229 (234)
T 2j6e_L          214 YSCQVTHEGSTVEKTV  229 (234)
T ss_dssp             EEEEEEBTTBCCCEEE
T ss_pred             EEEEEEeCCCceEEec
Confidence            9999999987654443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.05  E-value=3.2e-10  Score=76.18  Aligned_cols=61  Identities=21%  Similarity=0.346  Sum_probs=46.3

Q ss_pred             CCcEEEEEEE-eccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         72 RQTCKLLCCL-SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        72 g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      +..+.|.|.+ .| |.|.+.|++++..+..      ..+.  +|.+..  ..|+|.|+|.|.|..+.......
T Consensus       115 ~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~------~~~~--~l~~~~--~~d~g~Y~C~a~N~~~~~~~~~~  176 (180)
T 2dru_A          115 CSNATLTCEVLEG-TDVELKLYQGKEHLRS------LRQK--TMSYQW--TNLRAPFKCKAVNRVSQESEMEV  176 (180)
T ss_dssp             GGGTEEEEECSSC-TTCEEEEEETTEEEEE------ESSS--EEEEEC--SCCSSCEEEEEEETTEEEEEEEC
T ss_pred             CCCEEEEEEeCCC-CCCEEEEEECCeECcC------CCCC--EEEEEE--hhcCccEEEEEecCcCcccccee
Confidence            4569999999 56 9999999999987641      1222  455532  78999999999999988765553

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.04  E-value=8.9e-10  Score=76.67  Aligned_cols=116  Identities=12%  Similarity=0.105  Sum_probs=70.4

Q ss_pred             CceeEEEEeCCCCCCCCCCccccee---ccCcceeeEeeeccc-CCCeEEeecCCeEEecCCcEEEEEEEeccC--CCee
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVR---RREPLQITFWQETVE-SAPNFTFLLRPRVMQVRQTCKLLCCLSGKP--PPTV   89 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i   89 (168)
                      .|.+.+++..|.+.  |.|......   ......+.+...... .++.+...+....+.+|+++.|.|.+.+.|  .+.+
T Consensus        76 ~L~I~~v~~~D~G~--Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v  153 (240)
T 1moe_A           76 TLIIDPVEADDVAT--YYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYM  153 (240)
T ss_dssp             EEEESSCCGGGCEE--EEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCE
T ss_pred             EEEEcCCChhhCEE--EEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEE
Confidence            35666778888666  432222111   111122222211111 123355567778899999999999999877  4699


Q ss_pred             EEEeC--CEEC------------------CCCCeEEEec--CCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         90 KWYKG--NREL------------------SKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        90 ~W~~~--~~~~------------------~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .|+++  +..+                  ...++.+...  .....|.|.+++.+|+|.|.|.|.+
T Consensus       154 ~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          154 HWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEEEECCCCCcEEEEEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            99995  2211                  0123333221  3445799999999999999999984

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=99.04  E-value=5.3e-10  Score=69.13  Aligned_cols=75  Identities=19%  Similarity=0.275  Sum_probs=55.6

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC----CCeeEEEeCC--E--E-CC----------CCCeEEEecCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP----PPTVKWYKGN--R--E-LS----------KRDYSMSYSDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~~--~--~-~~----------~~~~~~~~~~~~~~l~i~~~~  120 (168)
                      +...+....+.+|+++.|.|.+.+.+    .+.+.|+++.  .  . +.          ..++......+..+|.|.+++
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v~   83 (111)
T 1j05_L            4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVE   83 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEccCCEEEEEECCCC
Confidence            34456667888999999999998876    5789999853  1  1 10          234444444556689999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12421        121 PEDSGEYKCVATNK  134 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~  134 (168)
                      .+|+|.|.|.+.|.
T Consensus        84 ~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           84 ADDVATYYCQQTNE   97 (111)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             cccCEEEEEEEecC
Confidence            99999999999875

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.04  E-value=1.4e-10  Score=82.23  Aligned_cols=128  Identities=10%  Similarity=0.073  Sum_probs=76.9

Q ss_pred             CceeEEEEeCCCCCCCCCCcccc-------eeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCe
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQ-------VRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT   88 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~   88 (168)
                      .+.+.++...|.|.  |.|....       .....++.+.+.  ....+|.+...+. ..+.+|++++|.|.+.+. .+.
T Consensus        63 ~L~I~~v~~~DsG~--Y~C~a~~~~~~~~~s~~S~~~~L~V~--~~~~~P~l~~~p~-~~V~~G~~vtL~C~~~~~-~~~  136 (257)
T 1b6u_A           63 NFSIGPMMQDLAGT--YRCYGSVTHSPYQLSAPSDPLDIVIT--GLYEKPSLSAQPG-PTVLAGESVTLSCSSRSS-YDM  136 (257)
T ss_dssp             EEEECSCCTTTCEE--EEEEEECSSCTTSCCCCCCCEEEEEE--CSSCCCEEECSSC-TTCBTTCEEEEEEECSSC-CSE
T ss_pred             EEEeecCCcccCEE--EEEeEeccCCCccccccCCCEEEecc--cCCCCcceEccCC-CccCCCCEEEEEEeCCCC-CcE
Confidence            45566677777665  4433211       011222333332  2234567665544 457899999999998775 478


Q ss_pred             eEEEeCCEECCCCCeEEEec--CCEEEEEEccCCCCCCeEEEEEEEeCCc-----ceEEEEEEEEeeCCC
Q psy12421         89 VKWYKGNRELSKRDYSMSYS--DGVVSMEIIDCKPEDSGEYKCVATNKHG-----TDETNCVVIVESEEE  151 (168)
Q Consensus        89 i~W~~~~~~~~~~~~~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~~p~  151 (168)
                      +.|+|++..+..........  .....|.|.+++  |+|.|+|.+.|...     ..+..+.|.|.+.|.
T Consensus       137 ~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p~  204 (257)
T 1b6u_A          137 YHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRDSPYEWSNSSDPLLVSVTGNPS  204 (257)
T ss_dssp             EEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSSCTTBBCCCCCCEEECCBCCC-
T ss_pred             EEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCCCCcccccCCCCEEEEEeccCC
Confidence            99999987654321111111  113478999998  99999999997532     123456777777654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.04  E-value=1.4e-09  Score=77.88  Aligned_cols=91  Identities=19%  Similarity=0.288  Sum_probs=63.3

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------------------CCCCeEEEe--cCCEEEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------------------SKRDYSMSY--SDGVVSME  115 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~~--~~~~~~l~  115 (168)
                      +...+....+.+|++++|.|.+.+.+  .+.+.|++++  ..+                  ...++.+..  ..+..+|.
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  108 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ  108 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence            34566778899999999999998875  6899999853  110                  012333332  23456899


Q ss_pred             EccCCCCCCeEEEEEEEeCCcc---e--EEEEEEEEeeCC
Q psy12421        116 IIDCKPEDSGEYKCVATNKHGT---D--ETNCVVIVESEE  150 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~~g~---~--~~~~~l~v~~~p  150 (168)
                      |.+++.+|+|.|.|.+.|..|.   .  .....|.|...+
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~  148 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGG  148 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC--
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCC
Confidence            9999999999999999998762   1  123467776544

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=99.04  E-value=2.5e-09  Score=69.52  Aligned_cols=93  Identities=17%  Similarity=0.171  Sum_probs=64.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-----ECC----------CCCeEEEecCCEEEEEEccCCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-----ELS----------KRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-----~~~----------~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      .+.+...+....+.+|++++|.|.+.+.+.+.+.||+...     .+.          ..++.........+|.|.+++.
T Consensus        16 ~~~v~q~p~~v~v~~G~sVtL~C~~s~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~v~~   95 (146)
T 2yc1_B           16 EIVLTQSPATLSVSPGERATLSCRASQSVRSYLAWYQQKPGQAPRLLFSDASNRATGIPARFTGSGSGTDFTLTISSLEP   95 (146)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCG
T ss_pred             cceEEEeCCEEEEecCCCEEEEEEECCCCCCEEEEEEECCCCCCEEEEEeCCccCCCcCCCeEEecCCCEEEEEECCCCH
Confidence            3455666777889999999999999887778899998531     110          2344444444566799999999


Q ss_pred             CCCeEEEEEEEeCCcce-EEEEEEEEeeC
Q psy12421        122 EDSGEYKCVATNKHGTD-ETNCVVIVESE  149 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~  149 (168)
                      +|+|.|.|.+.+..... -....|.|..+
T Consensus        96 ~DsG~Y~C~~~~~~~~~fg~GT~L~V~~~  124 (146)
T 2yc1_B           96 EDFAIYYCQQYRYSPRTFGQGTKVEIKRA  124 (146)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             HHCEEEEEEEecCCCCeECCCEEEEEeCC
Confidence            99999999998753221 12335666543

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.04  E-value=1.2e-09  Score=74.65  Aligned_cols=103  Identities=18%  Similarity=0.243  Sum_probs=66.7

Q ss_pred             ecCCeEEecCCcEEEEEEEecc-------CCCeeEEEeCCEEC------C------------CCCeEEEe--cCCEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGK-------PPPTVKWYKGNREL------S------------KRDYSMSY--SDGVVSME  115 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~-------p~p~i~W~~~~~~~------~------------~~~~~~~~--~~~~~~l~  115 (168)
                      .+....+.+|+++.|.|.+.+.       +.+.+.|++++...      .            ..++.+..  ..+..+|.
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~   85 (214)
T 2zg1_A            6 VQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSLS   85 (214)
T ss_dssp             CCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCEE
T ss_pred             CCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEEE
Confidence            4556788899999999998754       57889999986421      0            12222211  12233699


Q ss_pred             EccCCCCCCeEEEEEEEeCCcceE----EEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        116 IIDCKPEDSGEYKCVATNKHGTDE----TNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~~g~~~----~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      |.+++.+|+|.|.|.+.+..+...    ....|.|...+..+... .+. .+.+|+
T Consensus        86 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~-~~~-~~~~G~  139 (214)
T 2zg1_A           86 IGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIH-FLE-PLESGR  139 (214)
T ss_dssp             ECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC---C-CCCTTC
T ss_pred             EccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCcee-cCc-cccCCC
Confidence            999999999999999999864322    35677777655433321 222 255665

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.04  E-value=2.5e-09  Score=75.31  Aligned_cols=90  Identities=19%  Similarity=0.252  Sum_probs=60.2

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc--CCCeeEEEeCCE-----EC--------------CCCCeEEEe--cCCEEEEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGNR-----EL--------------SKRDYSMSY--SDGVVSMEI  116 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~~-----~~--------------~~~~~~~~~--~~~~~~l~i  116 (168)
                      ....+....+.+|+++.|.|.+.+.  +.+.+.|++...     .+              ...++.+..  ..+..+|.|
T Consensus        11 ~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   90 (257)
T 3gkz_A           11 QLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQL   90 (257)
T ss_dssp             EEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEEE
T ss_pred             EEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEEE
Confidence            3445667789999999999999884  578999998421     11              012333322  234557999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcc----eEEEEEEEEeeC
Q psy12421        117 IDCKPEDSGEYKCVATNKHGT----DETNCVVIVESE  149 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~v~~~  149 (168)
                      .+++.+|+|.|.|.+.|..+.    ......|.|...
T Consensus        91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~  127 (257)
T 3gkz_A           91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGG  127 (257)
T ss_dssp             CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC--
T ss_pred             CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCc
Confidence            999999999999999997221    223345666554

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.03  E-value=5.4e-10  Score=78.89  Aligned_cols=90  Identities=17%  Similarity=0.181  Sum_probs=58.3

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEe---ccCCCeeEEEeCCEECCCC-------------------CeEEEe--cCCEEE
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLS---GKPPPTVKWYKGNRELSKR-------------------DYSMSY--SDGVVS  113 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~---g~p~p~i~W~~~~~~~~~~-------------------~~~~~~--~~~~~~  113 (168)
                      +.+...+....+.+|+.+.|.|.+.   +.+.+.+.|++++......                   +..+..  ..+..+
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            4455566667889999999999987   6778889999965422111                   111100  011236


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCcceEE--EEEEEEe
Q psy12421        114 MEIIDCKPEDSGEYKCVATNKHGTDET--NCVVIVE  147 (168)
Q Consensus       114 l~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~v~  147 (168)
                      |.|.+++.+|+|.|.|.+.|..+....  ...|.|.
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~  121 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVL  121 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEE
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEe
Confidence            999999999999999999998665433  4445443

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.03  E-value=1.1e-09  Score=80.51  Aligned_cols=86  Identities=20%  Similarity=0.298  Sum_probs=61.7

Q ss_pred             ecCCeEEecCCcEEEEEEEecc--CCCeeEEEeC--CEEC------------------CCCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKG--NREL------------------SKRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~--~~~~------------------~~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.  +.+.+.|+++  +..+                  ...++.+...  .+..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELSS   85 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEECC
Confidence            4456778899999999999886  3688999986  3211                  0123333322  3456899999


Q ss_pred             CCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|..+.......|.|..
T Consensus        86 v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~  115 (344)
T 1za6_B           86 LRSEDTAVYFCTRSLNMAYWGQGTLVTVSS  115 (344)
T ss_dssp             CCGGGCEEEEEEETTTTCEECCCEEEEECS
T ss_pred             CCcccCEEEEEEEecCcceecCcEEEEEec
Confidence            999999999999999655444456677763

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.02  E-value=2.2e-09  Score=74.17  Aligned_cols=87  Identities=17%  Similarity=0.269  Sum_probs=57.7

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEEe-CCEECCCCC-eEEEecCC----EEEEEEccCCC--CCCe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWYK-GNRELSKRD-YSMSYSDG----VVSMEIIDCKP--EDSG  125 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~~-~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~--~d~G  125 (168)
                      .+|.+........+..|+.+.|.|.+.|. |.| .+.|++ ++..+.... ......++    ...|.|.....  .|.|
T Consensus       125 ~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g  204 (223)
T 1dee_B          125 SAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNE  204 (223)
T ss_dssp             BCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCC
T ss_pred             CCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCC
Confidence            45666533222334689999999999986 777 999999 887764300 00000112    22577777766  7889


Q ss_pred             EEEEEEEeCCcceEEEE
Q psy12421        126 EYKCVATNKHGTDETNC  142 (168)
Q Consensus       126 ~Y~C~a~n~~g~~~~~~  142 (168)
                      .|+|.|.|..+......
T Consensus       205 ~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          205 HVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             EEEEEEECTTCCEEEEE
T ss_pred             EEEEEEEeCCCCCcccc
Confidence            99999999998766543

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.02  E-value=2.9e-10  Score=78.30  Aligned_cols=122  Identities=16%  Similarity=0.087  Sum_probs=73.5

Q ss_pred             CceeEEEEeCCCCCCCCCCccccee-----ccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-e
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVR-----RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-T   88 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~   88 (168)
                      .|.+.+++..|.+.  |.|......     ......+.+.. ....+|.+........+.+|+.+.|.|.+.|. |.| .
T Consensus        82 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  158 (220)
T 1pz5_B           82 YLQMNNLRAEDTGI--YYCTRGGAVGAMDYWGQGTSVTVSS-ATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVT  158 (220)
T ss_dssp             EEEECSCCGGGCEE--EEEEEECTTSSEEEECCCEEEEECS-SCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCE
T ss_pred             EEEEccCCHHHCEE--EEEEEecCCcccceECCCEEEEEcc-CCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeE
Confidence            46677788888666  433322110     00112222221 12245666654444445789999999999997 888 9


Q ss_pred             eEEEeCCEECC---CCCeEEEecC---CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         89 VKWYKGNRELS---KRDYSMSYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        89 i~W~~~~~~~~---~~~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      +.|++++....   ....  ...+   ....|.|......| |.|+|.|.|..|....++.
T Consensus       159 v~W~~~~~~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          159 VKWNYGALSSGVRTVSSV--LQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             EEEGGGTCCTTEEECCCE--EETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             EEEecCCcccceEEcCCc--ccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeeec
Confidence            99999876310   1100  0010   12358888887766 9999999999997665543

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens}

Probab=99.02  E-value=1.3e-09  Score=67.13  Aligned_cols=86  Identities=14%  Similarity=0.148  Sum_probs=57.2

Q ss_pred             CCeEEecCCcEEEEEEEeccC-CCeeEEEeCCEE--C------------CCCCeEEE--ecCCEEEEEEccCCCCCCeEE
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGNRE--L------------SKRDYSMS--YSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~~--~------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      ....+.+|++++|.|...+.. .+.+.|++....  +            ...++.+.  ...+..+|.|.+++.+|+|.|
T Consensus         4 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y   83 (110)
T 2q87_A            4 RTVAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPANLSFTVTLENLTEEDAGTY   83 (110)
T ss_dssp             EEEEECTTSCEEEEEECCGGGTTSEEEEESCCSSSSCCCSEESSSTTCSEETTEEEEEEGGGTEEEEEESSCCGGGCEEE
T ss_pred             cEEEEeCCCcEEEEeEecCCcCCceEEEEecCCCCCCeEEEEeCCccccccCCEEEEEcCcCCEEEEEEccCCHHHCEEE
Confidence            346788999999999987654 468999986421  1            01233332  233456899999999999999


Q ss_pred             EEEEEeCC-c-ceEEEEEEEEeeCC
Q psy12421        128 KCVATNKH-G-TDETNCVVIVESEE  150 (168)
Q Consensus       128 ~C~a~n~~-g-~~~~~~~l~v~~~p  150 (168)
                      .|.+.+.. | .......|.|...|
T Consensus        84 ~C~~~~~~~g~~~~~~~~v~v~V~p  108 (110)
T 2q87_A           84 WCGVDTPWLQDFHDPVVEVEVSVFP  108 (110)
T ss_dssp             EEEEECTTSCCBCCCSEEEEEEEC-
T ss_pred             EEEEecCccCccCCccEEEEEEEec
Confidence            99999886 5 12233444444433

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.02  E-value=7.6e-10  Score=77.45  Aligned_cols=75  Identities=23%  Similarity=0.372  Sum_probs=53.8

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------C------------CCCeEEEe--cCCEEEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------S------------KRDYSMSY--SDGVVSME  115 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------~------------~~~~~~~~--~~~~~~l~  115 (168)
                      +...+....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+      .            ..++....  ......|.
T Consensus       130 ~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  209 (247)
T 1svz_A          130 QLQQSGPELKKPGETVKISCKATNYAFTDYSMHWVKQAPGGDLKYVGWINTETDEPTFADDFKGRFAFSLDTSTSTAFLQ  209 (247)
T ss_dssp             EEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEE
T ss_pred             EEeCCCceeecCCCcEEEEEEEcCcccCCcEEEEEEeCCCCCcEEEEEEEcCCCccccCccccCcEEEEEecCCCEEEEE
Confidence            33444556789999999999999874  5799999863  110      0            12333322  23445899


Q ss_pred             EccCCCCCCeEEEEEEEeC
Q psy12421        116 IIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~  134 (168)
                      |.+++.+|+|.|.|.+.|.
T Consensus       210 I~~v~~~DsG~Y~C~a~n~  228 (247)
T 1svz_A          210 INNLKNEDTATYFCVRDRH  228 (247)
T ss_dssp             ECSCCGGGCEEEEEEEEEG
T ss_pred             ECCCChhHCEEEEEEEecc
Confidence            9999999999999999995

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.01  E-value=1.2e-09  Score=74.80  Aligned_cols=85  Identities=15%  Similarity=0.152  Sum_probs=59.1

Q ss_pred             cCCeEEecCCcEEEEEEE-eccC-CCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeE
Q psy12421         64 LRPRVMQVRQTCKLLCCL-SGKP-PPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~-~g~p-~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~  126 (168)
                      +....+.+|+++.|.|.+ .+.+ .+.+.|++++  ..+             ...++......+...|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~~D~G~   86 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEECSCCGGGCEE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEeccCCEEEEEECCCCcccCEE
Confidence            455678899999999995 4443 6899999853  111             0224444444556689999999999999


Q ss_pred             EEEEEEeCCc-c-eEEEEEEEEee
Q psy12421        127 YKCVATNKHG-T-DETNCVVIVES  148 (168)
Q Consensus       127 Y~C~a~n~~g-~-~~~~~~l~v~~  148 (168)
                      |.|.+.|..+ . ......|.|..
T Consensus        87 Y~C~~~~~~~~~~~~~~~~l~V~~  110 (216)
T 2xzc_L           87 YYCGTWDSSLNPVFGGGTKLEIKR  110 (216)
T ss_dssp             EEEEEECTTSCEEEBCCEEEEECC
T ss_pred             EEEEEEeCCCcceECCCEEEEEcC
Confidence            9999999876 1 22234566643

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.00  E-value=2.2e-09  Score=75.81  Aligned_cols=88  Identities=23%  Similarity=0.305  Sum_probs=61.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------------------CCCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------------------SKRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|++++|.|.+.+.|  .+.+.|+++.  ..+                  ...++.+...  .+..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (256)
T 1nqb_A            6 QSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLSS   85 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEECc
Confidence            45567888999999999998875  6899999842  111                  0133333322  3456899999


Q ss_pred             CCCCCCeEEEEEEEeCCcc-----eEEEEEEEEeeCC
Q psy12421        119 CKPEDSGEYKCVATNKHGT-----DETNCVVIVESEE  150 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~-----~~~~~~l~v~~~p  150 (168)
                      ++.+|+|.|.|.+.|..|.     ......|.|...+
T Consensus        86 v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~  122 (256)
T 1nqb_A           86 LTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDI  122 (256)
T ss_dssp             CCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCC
T ss_pred             CChhhCEEEEEEEeeccCccceeEEcCceeeeecccc
Confidence            9999999999999998763     1223466665443

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.00  E-value=7.7e-10  Score=75.52  Aligned_cols=84  Identities=17%  Similarity=0.211  Sum_probs=56.0

Q ss_pred             CeEEecCCcEEEEEEEeccCCCe---eEEEeCCEECC-----------------CCCeEE-------EecCCEEEEEEcc
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPT---VKWYKGNRELS-----------------KRDYSM-------SYSDGVVSMEIID  118 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~---i~W~~~~~~~~-----------------~~~~~~-------~~~~~~~~l~i~~  118 (168)
                      ...+.+|+++.|.|.+.+.+.+.   +.|+|++..+.                 ..+...       ....+..+|.|.+
T Consensus        10 ~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~   89 (225)
T 4fmk_A           10 EVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFRG   89 (225)
T ss_dssp             EEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEECS
T ss_pred             EEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEcc
Confidence            35577899999999999877764   78999764221                 000000       0011223699999


Q ss_pred             CCCCCCeEEEEEEEeCCcceEEEE-EEEEeeC
Q psy12421        119 CKPEDSGEYKCVATNKHGTDETNC-VVIVESE  149 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~~~~~-~l~v~~~  149 (168)
                      ++.+|+|.|.|.+.|..|...... .+.+..+
T Consensus        90 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~  121 (225)
T 4fmk_A           90 LRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQ  121 (225)
T ss_dssp             CCGGGCEEEEEEEEEETTEEEEEEEEEEEEBC
T ss_pred             CCHHHCcceEEEEEeCCCcceeeeeeeeeecC
Confidence            999999999999999877654433 3444433

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.00  E-value=3.6e-10  Score=85.48  Aligned_cols=127  Identities=15%  Similarity=0.167  Sum_probs=76.1

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEEe
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWYK   93 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~~   93 (168)
                      .|.+.+++..|.|.|.+...+..........+.+.. ....+|.+........+..|+.+.|.|.+.|. |.| .+.|++
T Consensus        79 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k  157 (434)
T 1igy_B           79 NIHLSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSS-AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS  157 (434)
T ss_dssp             CEEECSBCGGGCSEECCCCSSSSCCCCCCEECEECC-SCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETT
T ss_pred             EEEECCCChHHCEEEEEEEEccccccCCceEEEEcc-CCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEee
Confidence            577889999997775443322111111222232221 11234555443333345789999999999986 776 999999


Q ss_pred             CCEECCCCCe-EEEecCC---EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         94 GNRELSKRDY-SMSYSDG---VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        94 ~~~~~~~~~~-~~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ++..+..... .....+.   ...|.|..+...| |.|+|.|.|..|.......+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~~  211 (434)
T 1igy_B          158 GSLSSGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTKVDKKI  211 (434)
T ss_dssp             TTBCSSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCCEEEEC
T ss_pred             CCcCCCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCccceeec
Confidence            9864311000 0000010   1258898998888 99999999999885544444

>2aw2_A B and T lymphocyte attenuator; IGI domain, IGG domain, TNFRSF, protein-protein complex, IMM system; HET: NAG FUL; 2.80A {Homo sapiens} SCOP: b.1.1.1

Probab=99.00  E-value=1.7e-08  Score=60.59  Aligned_cols=82  Identities=21%  Similarity=0.332  Sum_probs=61.2

Q ss_pred             eEEecCCcEEEEEEEec-cCCCeeEEEeCC----EECCCCCeEEEecCC--EEEEEEccCCCCCCeEEEEEEEeCCcce-
Q psy12421         67 RVMQVRQTCKLLCCLSG-KPPPTVKWYKGN----RELSKRDYSMSYSDG--VVSMEIIDCKPEDSGEYKCVATNKHGTD-  138 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~----~~~~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-  138 (168)
                      ..+..|+.+.|.|++.+ .+.|.+.|-|-+    ..|..........+.  ...|.+..+..+|+|.|.|.|++..|.. 
T Consensus        21 hsv~~G~~f~leCpv~yc~~rP~VtWcKln~~~c~~L~~~~q~w~E~~N~s~fvLhf~~V~~sDsGsYRCsAn~~sg~ie  100 (120)
T 2aw2_A           21 HSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIE  100 (120)
T ss_dssp             EEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             ceEecCCeEEEEccEEeccCCCceEEEecCCceEEECccccccceecCCeeEEEEEEeeeeEcCCcceEEEeeCCCCcEE
Confidence            56889999999999999 689999998855    455543322222222  3368899999999999999999999875 


Q ss_pred             EEEEEEEEee
Q psy12421        139 ETNCVVIVES  148 (168)
Q Consensus       139 ~~~~~l~v~~  148 (168)
                      +.+..|.|.+
T Consensus       101 SHsvtI~Vt~  110 (120)
T 2aw2_A          101 SHSTTLYVTD  110 (120)
T ss_dssp             CCCEEEEEEC
T ss_pred             eeEEEEEEEe
Confidence            4455666653

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.00  E-value=2.8e-09  Score=73.74  Aligned_cols=86  Identities=19%  Similarity=0.278  Sum_probs=60.6

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------------------CCCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------------------SKRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+                  ...++.+...  .+..+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (225)
T 1op3_H            6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (225)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence            34557788999999999998876  7889999853  111                  0123333322  3456899999


Q ss_pred             CCCCCCeEEEEEEEeCCc-----c---eEEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHG-----T---DETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g-----~---~~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|..|     .   ......|.|..
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSP  123 (225)
T ss_dssp             CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEES
T ss_pred             CChhhCEEEEEEEecCCCccccccceeecCCEEEeccc
Confidence            999999999999999865     2   11234677765

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.00  E-value=4.5e-09  Score=64.59  Aligned_cols=74  Identities=26%  Similarity=0.434  Sum_probs=54.4

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--E----ECC-CCCeEEEe--cCCEEEEEEccCCCCCCeEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--R----ELS-KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~----~~~-~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +...+....+.+|+++.|.|.+.+.+  .+.+.||++.  .    .+. ..++....  ..+..+|.|.+++.+|+|.|.
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   82 (108)
T 2coq_A            3 VDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETVDEGSNSASLTIRDLRVEDSGTYK   82 (108)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEEcCCCCEEEEEECCCCcccCEEEE
Confidence            34556677889999999999998753  5789999863  2    121 13443322  245668999999999999999


Q ss_pred             EEEEe
Q psy12421        129 CVATN  133 (168)
Q Consensus       129 C~a~n  133 (168)
                      |.+.|
T Consensus        83 C~~~~   87 (108)
T 2coq_A           83 CKAYR   87 (108)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99987

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.00  E-value=4e-09  Score=72.31  Aligned_cols=88  Identities=20%  Similarity=0.323  Sum_probs=63.0

Q ss_pred             CCeEEecCCcEEEEEEEeccCC-----CeeEEEeCCEEC---------CC-------CCeEEEe---cCCEEEEEEccCC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPP-----PTVKWYKGNREL---------SK-------RDYSMSY---SDGVVSMEIIDCK  120 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~-----p~i~W~~~~~~~---------~~-------~~~~~~~---~~~~~~l~i~~~~  120 (168)
                      ....+.+|+++.|.|.+.+.|.     +.+.|++++..+         ..       .+..+..   ..+..+|.|.+++
T Consensus         9 ~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~   88 (222)
T 3sbw_C            9 DLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQITDVK   88 (222)
T ss_dssp             SEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEESSCC
T ss_pred             ccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEcCcc
Confidence            3456789999999999887773     489999975322         10       1111111   1245589999999


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEeeCCCch
Q psy12421        121 PEDSGEYKCVATNKHGTDETNCVVIVESEEESK  153 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~  153 (168)
                      .+|+|.|.|.+.| .|.....+.|.|..++..+
T Consensus        89 ~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~  120 (222)
T 3sbw_C           89 LQDAGVYRCMISY-GGADYKRITVKVNAPYNKI  120 (222)
T ss_dssp             GGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCC
T ss_pred             cccCeEEEEEEEe-CCCceeEEEEEEECCCCCC
Confidence            9999999999999 6667777888888665443

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=99.00  E-value=2.7e-09  Score=67.20  Aligned_cols=86  Identities=17%  Similarity=0.213  Sum_probs=56.7

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCC---eeEEEeCCEECCC-------------------CCeEEEe---cCCEEEEEEcc
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGNRELSK-------------------RDYSMSY---SDGVVSMEIID  118 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~~~~~~-------------------~~~~~~~---~~~~~~l~i~~  118 (168)
                      +....+.+|+++.|.|.+.+.+..   .+.|+|.......                   .+..+..   ..+..+|.|.+
T Consensus         7 p~~vtv~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~   86 (123)
T 4gjt_B            7 SDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLRN   86 (123)
T ss_dssp             CSEEECCTTSEEEECCEECCCTTCCEEEEEEEECCCSSCCCEEEEECSSSCCCBCGGGTTTEECCCSSCCTTBCCEEEES
T ss_pred             CCEEEEEcCCCEEEEEEEeCCccCceeEEEEEEcCCCCCcceeEEEEecCCcEeCccceeEEEEecCCCcCCEEEEEECC
Confidence            334567789999999998775543   5789986421110                   0111110   11234699999


Q ss_pred             CCCCCCeEEEEEEEe-CCcceEEEEEEEEeeC
Q psy12421        119 CKPEDSGEYKCVATN-KHGTDETNCVVIVESE  149 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v~~~  149 (168)
                      ++.+|+|.|.|.+.+ ..|.......|.|.+.
T Consensus        87 v~~~DsG~Y~C~v~t~~~g~~~~~~~L~VlE~  118 (123)
T 4gjt_B           87 AVQADEGEYECRVSTFPAGSFQARLRLRVLEH  118 (123)
T ss_dssp             CCSSSCSEEEEEEEESSSCEEEEEEEEEC---
T ss_pred             CChHHCEEEEEEEEECCCCeEEeEEEEEEEEC
Confidence            999999999998876 5677777888888654

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.00  E-value=6.7e-10  Score=73.95  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=66.8

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceeccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK   93 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~   93 (168)
                      ...|.+.+++..|.|.  |.+..........+.+.+.  .....|.+.....        ...|.|.+.+.|.|.+.|++
T Consensus        59 ~~sL~I~~v~~~DsG~--Y~C~~~n~~~~~~~~L~V~--~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i~W~~  126 (171)
T 1ccz_A           59 SGSLTIYNLTSSDEDE--YEMESPNITDTMKFFLYVL--EMVSKPMIYWECS--------NATLTCEVLEGTDVELKLYQ  126 (171)
T ss_dssp             TCCEEECSCCGGGCEE--EEEECTTCCSCEEEEEEEE--CCCCCCEEEEETT--------TTEEEEECSSCSSCEEEEEE
T ss_pred             CCeEEECCCChhhCce--EEEEEeCCCCcEEEEEEEE--CcCCCCEEEEecC--------CcEEEEEeCCCCCcEEEEEE
Confidence            3567788888888776  4333222111112222222  1122355543222        13799999999999999999


Q ss_pred             CCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         94 GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ++..+...      ...  .+.+.  ...|.|.|+|.|.|..|.......|
T Consensus       127 ~~~~l~~~------~~~--~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l  167 (171)
T 1ccz_A          127 GKEHLRSL------RQK--TMSYQ--WTNLRAPFKCKAVNRVSQESEMEVV  167 (171)
T ss_dssp             TTEEEEEE------SSS--EEEEE--CSCCSSCEEEEEEETTEEEEEEECC
T ss_pred             CCEECcCC------cce--EEEEe--ccCCCceEEEEEEcccCcccceeEE
Confidence            99876531      111  33333  3678899999999999987766544

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=99.00  E-value=2.3e-09  Score=66.54  Aligned_cols=75  Identities=19%  Similarity=0.240  Sum_probs=55.7

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC------CCeeEEEeCC--E---EC----------CCCCeEEEecCCEEEEEEcc
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP------PPTVKWYKGN--R---EL----------SKRDYSMSYSDGVVSMEIID  118 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p------~p~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~l~i~~  118 (168)
                      +...+....+.+|+++.|.|.+.+.+      .+.+.||+..  .   .+          ...++......+..+|.|.+
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~   83 (114)
T 1eeq_A            4 LTQSPDSLAVSLGERATINCKSSQSVLDSSNSKNYLAWYQQKPGQPPKLLIYWASTRESGVPDRFSGSGSGTDFTLTISS   83 (114)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESS
T ss_pred             eEecCCeEEEcCCCeEEEEEEcCCCccccccCCccEEEEEECCCCCCEEEEEecCccCCCCCCCEEEeecCCEEEEEECC
Confidence            44556677899999999999998766      3789999853  1   11          02344444345566899999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12421        119 CKPEDSGEYKCVATNK  134 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~  134 (168)
                      ++.+|+|.|.|.+.+.
T Consensus        84 v~~~DsG~Y~C~~~~~   99 (114)
T 1eeq_A           84 LQAEDVAVYYCQQYYS   99 (114)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CCcccCEEEEEEEeeC
Confidence            9999999999999875

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.99  E-value=5e-09  Score=73.28  Aligned_cols=77  Identities=16%  Similarity=0.347  Sum_probs=56.3

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEecc--CCCeeEEEeCC--EEC------------------CCCCeEEEecC--CEEE
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGN--REL------------------SKRDYSMSYSD--GVVS  113 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~--~~~------------------~~~~~~~~~~~--~~~~  113 (168)
                      +.+...+....+.+|+++.|.|.+.+.  +.+.+.|+++.  ..+                  ...++.+....  +..+
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence            345555667788999999999999885  67899999843  111                  12333333222  4568


Q ss_pred             EEEccCCCCCCeEEEEEEEeC
Q psy12421        114 MEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       114 l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      |.|.+++.+|+|.|.|.+.+.
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~  102 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEA  102 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEE
T ss_pred             EEECCCCcccCEEEEEeeecC
Confidence            999999999999999999986

>3kg5_A B-cell antigen receptor complex-associated protei chain; CD79B, IG-beta, BCR, immunoglobulin domain, protein binding; 3.20A {Homo sapiens}

Probab=98.99  E-value=6.2e-09  Score=66.63  Aligned_cols=94  Identities=16%  Similarity=0.173  Sum_probs=64.4

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC---CEEC-----CCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG---NREL-----SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~---~~~~-----~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      .+...+....+.+|++++|.|...+. ...+.||+.   +..+     ...++..........|.|.+++.+|+|.|.|.
T Consensus        20 ~v~Q~p~~~~v~~G~svtL~C~~s~~-~~~v~Wyrq~~~g~~~~~l~~~~~rf~~~~~~~~~~L~I~~~~~~Dsg~Y~C~   98 (134)
T 3kg5_A           20 RIWQSPRFIARKRGFTVKMHCYMNSA-SGNVSWLWKQEMDENPQQLKLEKGRMEESQNESLATLTIQGIRFEDNGIYFCQ   98 (134)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCCT-TCCCEEEEESSSSSCCEECCCCTTTEEEEECSSEEEEEECSCCTTTCEEEEEE
T ss_pred             EEEEeCCEEEEeCCCCEEEEEEECCC-CceEEEEEECCCCCCcEEEEEECCeEEEEccCCEEEEEECCCCcCcCEEEEEE
Confidence            44556667889999999999998765 578999987   3222     12455554455567899999999999999999


Q ss_pred             EEeCCc-c--eEEEEEEEEeeCCCch
Q psy12421        131 ATNKHG-T--DETNCVVIVESEEESK  153 (168)
Q Consensus       131 a~n~~g-~--~~~~~~l~v~~~p~~~  153 (168)
                      +.+..+ .  .-....|.|...|...
T Consensus        99 ~~~~~~~~~~fg~GT~L~V~~~p~~~  124 (134)
T 3kg5_A           99 QKCNNTSEVYQGCGTELRVMGFSTLA  124 (134)
T ss_dssp             EECTTTCCEEECCCEEEEEECC----
T ss_pred             EEcCCCCceEECCCEEEEEecCCCHH
Confidence            987632 1  1123467776655443

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=98.99  E-value=1.8e-09  Score=73.76  Aligned_cols=84  Identities=20%  Similarity=0.318  Sum_probs=57.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC-----------------CCCCeEEEe--cCCEEEEEEccC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL-----------------SKRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~-----------------~~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      .+....+.+|+++.|.|.+.+.|  .+.+.|+++.  ..+                 ...++.+..  ..+..+|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            35567888999999999999865  4899999852  111                 123333332  224558999999


Q ss_pred             CCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      +.+|+|.|.|.+.|.. .......|.|.
T Consensus        86 ~~~D~G~Y~C~~~~~~-~~~~~~~l~V~  112 (210)
T 3d9a_H           86 TTEDTATYYCANWDGD-YWGQGTLVTVS  112 (210)
T ss_dssp             CGGGCEEEEEEETTSS-CBCCCEEEEEC
T ss_pred             CcccCEEEEEEEecCc-ccccceEEEec
Confidence            9999999999999864 11122455555

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=98.98  E-value=7.6e-09  Score=65.51  Aligned_cols=78  Identities=23%  Similarity=0.334  Sum_probs=57.3

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEecc--CCCeeEEEeC--CEE----CC-CCCeEEEe--cCCEEEEEEccCCCCCCeEE
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKG--NRE----LS-KRDYSMSY--SDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~--~~~----~~-~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      .+.+.+....+.+|++++|.|...+.  +.+.+.||++  +..    +. ..++....  ......|.|.+++.+|+|.|
T Consensus         2 ~V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y   81 (126)
T 3moq_A            2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTY   81 (126)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             ceEECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEEeCCCCEEEEEECcCChHhCEEE
Confidence            45566777889999999999999875  5678999984  221    11 12333322  23466899999999999999


Q ss_pred             EEEEEeCCc
Q psy12421        128 KCVATNKHG  136 (168)
Q Consensus       128 ~C~a~n~~g  136 (168)
                      .|.+.+..+
T Consensus        82 ~C~~~~~~~   90 (126)
T 3moq_A           82 KCQAFYVFF   90 (126)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEcCC
Confidence            999988654

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.98  E-value=1e-09  Score=75.76  Aligned_cols=83  Identities=13%  Similarity=0.194  Sum_probs=57.0

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc-CC--CeeEEEeCCEECCC-CCeEEEecCCE----EEEEEccCCCCCCeEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PP--PTVKWYKGNRELSK-RDYSMSYSDGV----VSMEIIDCKPEDSGEY  127 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~--p~i~W~~~~~~~~~-~~~~~~~~~~~----~~l~i~~~~~~d~G~Y  127 (168)
                      .+|.+.... ...+..|+.+.|.|.+.+. |.  +.+.|++++..+.. ........++.    +.|.|......|.|.|
T Consensus       122 ~~P~v~~~~-~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~y  200 (220)
T 2fbj_H          122 RNPTIYPLT-LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESV  200 (220)
T ss_dssp             BCCEEEEEC-CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEE
T ss_pred             CCCEEEEee-cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeE
Confidence            456665444 3345689999999999986 76  79999999865411 00001112221    2488888888899999


Q ss_pred             EEEEEeCCcceE
Q psy12421        128 KCVATNKHGTDE  139 (168)
Q Consensus       128 ~C~a~n~~g~~~  139 (168)
                      +|.|.|..|..+
T Consensus       201 tC~v~n~~~~~~  212 (220)
T 2fbj_H          201 KCSVQHDSNPVQ  212 (220)
T ss_dssp             EEEEEETTSCCE
T ss_pred             EEEEEcCCCceE
Confidence            999999988755

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=98.98  E-value=2e-09  Score=66.25  Aligned_cols=71  Identities=23%  Similarity=0.354  Sum_probs=52.6

Q ss_pred             cCCeEEecCCcEEEEEE-EeccC-CCeeEEEeCCEEC-------------CCCCeEEE--ecCCEEEEEEccCCCCCCeE
Q psy12421         64 LRPRVMQVRQTCKLLCC-LSGKP-PPTVKWYKGNREL-------------SKRDYSMS--YSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~-~~g~p-~p~i~W~~~~~~~-------------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~  126 (168)
                      +....+.+|++++|.|. +.+.+ .+.+.|++....+             ...++...  ...+..+|.|.+++.+|+|.
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~r~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~DsG~   86 (109)
T 1pew_A            7 PHSVSESPGKTVTISCTRSSGNIASNYVQWYQQRSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTEDEAD   86 (109)
T ss_dssp             CSEEEECTTSCEEEEEEESSSCGGGSCCEEEEC-CCCEEEEBTTTBCCTTCCTTEEEEEETTTTEEEEEECSCCGGGCEE
T ss_pred             CCCEEEcCCCCEEEEEEeCCCCCCCccEEEEEECCCCcEEEEecCCcCCCCCCcEEEEeccCCCEEEEEECCCChhhCEE
Confidence            55677889999999999 77665 5789999976211             01334443  33446689999999999999


Q ss_pred             EEEEEEeC
Q psy12421        127 YKCVATNK  134 (168)
Q Consensus       127 Y~C~a~n~  134 (168)
                      |.|.+.+.
T Consensus        87 Y~C~~~~~   94 (109)
T 1pew_A           87 YYCQSYDA   94 (109)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEeC
Confidence            99999875

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=98.98  E-value=6e-10  Score=78.08  Aligned_cols=76  Identities=18%  Similarity=0.265  Sum_probs=54.7

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEECC------------------CCCeEEEe--cCCEEE
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRELS------------------KRDYSMSY--SDGVVS  113 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~~------------------~~~~~~~~--~~~~~~  113 (168)
                      +.+...+....+.+|+++.|.|.+.+.+  .+.+.|+++  +..+.                  ..++.+..  .....+
T Consensus       132 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  211 (250)
T 3esu_F          132 EVQLQQSGPELVKPGASVKISCKDSGYAFSSSWMNWVKQRPGQGPEWIGRIYPGDGDTNYNGKFKGKATLTADKSSSTAY  211 (250)
T ss_dssp             ---CEECCCEEECTTCCEEEEEECCSTTGGGSEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEE
T ss_pred             ceEEecCCceEEcCCceEEEEEEecCCcccCCEEEEEEECCCCCcEEEEEEeccCCccccCccccceEEEEecCCCCeEE
Confidence            3444566677899999999999998877  889999997  32220                  12233221  134457


Q ss_pred             EEEccCCCCCCeEEEEEEEe
Q psy12421        114 MEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus       114 l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      |.|.+++.+|+|.|.|.+.+
T Consensus       212 L~I~~v~~~DsG~Y~C~~~~  231 (250)
T 3esu_F          212 MQLSSLTSVDSAVYFCARSG  231 (250)
T ss_dssp             EEECSCCGGGCEEEEEEEEC
T ss_pred             EEECCCCcccCEEEEEEEec
Confidence            99999999999999999997

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=98.98  E-value=1.8e-09  Score=75.53  Aligned_cols=78  Identities=19%  Similarity=0.290  Sum_probs=54.6

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC-----------------CCCCeEEEe--cCCEEEEEEc
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL-----------------SKRDYSMSY--SDGVVSMEII  117 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~-----------------~~~~~~~~~--~~~~~~l~i~  117 (168)
                      ...+....+.+|+++.|.|.+.+.|  .+.+.|+++.  ..+                 ...++.+..  .....+|.|.
T Consensus       126 ~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~k~~~~~~~~~l~~~~~~g~~~~~~~~~~r~~~~~~~~~~~~~L~I~  205 (242)
T 2znx_A          126 LQESGPSLVKPSQTLSLTCSVTGDSITSDYXSXIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLN  205 (242)
T ss_dssp             EEEECCSEECTTSCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred             eecCCcceecCCCeEEEEEEEEccccCCcceeeEeeCCCCCcEEEEEEecCCccccCccccCcEEEEecCCCCEEEEEEC
Confidence            3344456689999999999999875  5789999852  211                 012333322  2334579999


Q ss_pred             cCCCCCCeEEEEEEEeC--Ccce
Q psy12421        118 DCKPEDSGEYKCVATNK--HGTD  138 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~--~g~~  138 (168)
                      +++.+|+|.|.|.|.|.  +|..
T Consensus       206 ~v~~~D~G~Y~C~a~~~~~fG~g  228 (242)
T 2znx_A          206 SVTTEDTATYYCANXDGDYXGQG  228 (242)
T ss_dssp             SCCGGGCEEEEEEETTSSCBCCC
T ss_pred             CCCcCcCEEEEEeccCCcccCCC
Confidence            99999999999999984  4443

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=98.97  E-value=9.2e-10  Score=77.60  Aligned_cols=127  Identities=14%  Similarity=0.178  Sum_probs=73.8

Q ss_pred             ceeEEEEeCCCCCCCCCCcccce------eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-e
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQV------RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-T   88 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~   88 (168)
                      |.+.+++..|.+.  |.|.....      .......+.+.. ....+|.+........+..|+.+.|.|.+.| .|.+ .
T Consensus        81 L~I~~v~~~DsG~--Y~C~~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~  157 (253)
T 3liz_H           81 LQMSSLKSEDTAM--YYCTRDPAGRAWFAYWGQGTLVTVSA-AKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVT  157 (253)
T ss_dssp             EEECSCCGGGCEE--EEEEECCBTTTBCCEECCCEEEEECS-SCCBCCEEEEECC------CCEEEEEEEEEEEBSSCCE
T ss_pred             EEECCCChhhCEE--EEEEEecCCcceeeEECCCEEEEEec-cCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCCeE
Confidence            5666777788666  43332211      001112222221 2335677765544455667999999999998 6766 8


Q ss_pred             eEEEeCCEECCCCCe-EEEecC---CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         89 VKWYKGNRELSKRDY-SMSYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        89 i~W~~~~~~~~~~~~-~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      +.|++++........ .....+   ....|.|......| |.|+|.+.|..+.......|.+.
T Consensus       158 v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          158 VTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             EEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            999998863311000 001111   01368899998889 99999999998887776666554

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=98.97  E-value=8.5e-09  Score=71.08  Aligned_cols=86  Identities=19%  Similarity=0.269  Sum_probs=60.4

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--E---EC---------------CCCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--R---EL---------------SKRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~---~~---------------~~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++.  .   .+               ...++.+...  .+..+|.|.+
T Consensus         6 q~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (220)
T 2fbj_H            6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             cCCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECC
Confidence            34567888999999999998865  6889999853  1   11               0123443322  3456899999


Q ss_pred             CCCCCCeEEEEEEEeCCcc---eEEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHGT---DETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~---~~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|..+.   ......|.|..
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  118 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSA  118 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECS
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecC
Confidence            9999999999999997553   11234677764

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=98.97  E-value=1.4e-09  Score=73.21  Aligned_cols=81  Identities=17%  Similarity=0.273  Sum_probs=60.2

Q ss_pred             CeEEecCCcEEEEEEEe--ccCCCeeEEEe--CCEEC-----------CCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLS--GKPPPTVKWYK--GNREL-----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~--g~p~p~i~W~~--~~~~~-----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      .....+|+.+.|.|...  +.+.+.+.|++  ++..+           ...++. ...++  +|.|.+++..|+|.|+|.
T Consensus         8 ~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~-~~~ng--sL~I~~v~~~DsG~Y~c~   84 (182)
T 1hnf_A            8 ETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK-LFKNG--TLKIKHLKTDDQDIYKVS   84 (182)
T ss_dssp             EEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE-ECTTS--CEEECSCCGGGCEEEEEE
T ss_pred             EEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE-ECCCC--CEEECCCChhhCEEEEEE
Confidence            35677899999999532  35578999999  87655           123333 33555  799999999999999999


Q ss_pred             EEeCCcceE--EEEEEEEeeC
Q psy12421        131 ATNKHGTDE--TNCVVIVESE  149 (168)
Q Consensus       131 a~n~~g~~~--~~~~l~v~~~  149 (168)
                      +.|..|...  ..+.|.|.++
T Consensus        85 ~~n~~g~~~~~~~~~L~V~~~  105 (182)
T 1hnf_A           85 IYDTKGKNVLEKIFDLKIQER  105 (182)
T ss_dssp             EEETTSCEEEEEEEEEEEECC
T ss_pred             EEeCCCceeEEEEEEEEEcCc
Confidence            999988753  4566777654

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.97  E-value=4.6e-09  Score=73.09  Aligned_cols=129  Identities=15%  Similarity=0.154  Sum_probs=71.5

Q ss_pred             CceeEEEEeCCCCCCCCCCccccee--------ccCcceeeEeeecccCCCeEEeecCCeEEecC-CcEEEEEEEecc-C
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVR--------RREPLQITFWQETVESAPNFTFLLRPRVMQVR-QTCKLLCCLSGK-P   85 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g-~~~~l~C~~~g~-p   85 (168)
                      .|.+.+++..|.+.  |.|......        ......+.+.. ....+|.+........+..| +.+.|.|.+.|. |
T Consensus        79 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~~~~L~V~~-~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P  155 (232)
T 1dn0_B           79 SLKLSSVTAADTAV--YYCARPPHDTSGHYWNYWGQGTLVTVSS-GSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLP  155 (232)
T ss_dssp             EEEECSCCGGGCEE--EEEEECSSTTSCSCCSEECCCEEEEECS-SCCBCCEEEEEECC------CCSEEEEEEEEEEBS
T ss_pred             EEEECCCCcccCEE--EEEEEecCCcCCchhhhcccceEEEEcc-CCCCCCceEEeccccccCCCCCcEEEEEEEEEEeC
Confidence            46677778888666  433322100        01112222221 12234665533222334577 899999999986 7


Q ss_pred             CC-eeEEEe-CCEECCCCC-eEEEecCC----EEEEEEccCCC--CCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421         86 PP-TVKWYK-GNRELSKRD-YSMSYSDG----VVSMEIIDCKP--EDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus        86 ~p-~i~W~~-~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      .| .+.|++ ++..+.... ......++    ...|.|.....  .|.|.|+|.+.|..+.......+.+.
T Consensus       156 ~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~  226 (232)
T 1dn0_B          156 DSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVI  226 (232)
T ss_dssp             SCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEEEEEECCC-
T ss_pred             CCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcceeEecCCC
Confidence            76 999999 887664300 00000112    22578888776  78999999999999887666655544

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.96  E-value=1.8e-09  Score=76.68  Aligned_cols=94  Identities=17%  Similarity=0.184  Sum_probs=64.8

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccC-----CCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKP-----PPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSME  115 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p-----~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~  115 (168)
                      ..+.+...+....+.+|+++.|.|.+.+.+     .+.+.|+++.  ..+             ...++......+..+|.
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~   93 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGSGTDFTLK   93 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcCCCEEEEE
Confidence            345666677778889999999999998877     5899999853  111             12344444445556899


Q ss_pred             EccCCCCCCeEEEEEEEeCCcce-EEEEEEEEeeC
Q psy12421        116 IIDCKPEDSGEYKCVATNKHGTD-ETNCVVIVESE  149 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~  149 (168)
                      |.+++.+|+|.|.|.+.|..+.. .....|.|...
T Consensus        94 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~  128 (268)
T 1x9q_A           94 INRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSS  128 (268)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEC----
T ss_pred             ECCCChhHCEEEEEEEecCCCceEcCCEEEEEccC
Confidence            99999999999999999875432 22345556543

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.96  E-value=2.7e-09  Score=74.47  Aligned_cols=75  Identities=20%  Similarity=0.357  Sum_probs=55.0

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--------------CEECC-----CCCeEEEe-cCCEEEEEEc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--------------NRELS-----KRDYSMSY-SDGVVSMEII  117 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--------------~~~~~-----~~~~~~~~-~~~~~~l~i~  117 (168)
                      +.+...+....+.+|+++.|.| ..+.+.+.+.|++.              +....     ..++.+.. ..+..+|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            3455566678899999999999 66888999999982              21111     13443332 2335589999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy12421        118 DCKPEDSGEYKCVATN  133 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n  133 (168)
                      +++.+|+|.|.|.+.+
T Consensus        82 ~v~~~D~G~Y~C~~~~   97 (245)
T 4ei6_B           82 PTALEDSAVYFCASSF   97 (245)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCCHhHCEEEEEEEcc
Confidence            9999999999999996

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.96  E-value=3e-10  Score=86.41  Aligned_cols=90  Identities=17%  Similarity=0.221  Sum_probs=61.3

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc-CC-CeeEEEeCCEECCCCCeE-EEecCC----EEEEEEccCCCCCCeEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PP-PTVKWYKGNRELSKRDYS-MSYSDG----VVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~-~~~~~~----~~~l~i~~~~~~d~G~Y~  128 (168)
                      .+|.+........+.+|+.+.|.|.+.|. |. +.+.|++++..+...... ....++    ...|.|.++...| |.|+
T Consensus       131 ~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~  209 (457)
T 1hzh_H          131 KGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYI  209 (457)
T ss_dssp             BCCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCE
T ss_pred             CCCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEE
Confidence            35666554444456789999999999986 64 899999998654211111 111222    1268899998889 9999


Q ss_pred             EEEEeCCcceEEEEEEEE
Q psy12421        129 CVATNKHGTDETNCVVIV  146 (168)
Q Consensus       129 C~a~n~~g~~~~~~~l~v  146 (168)
                      |.|.|..+.......+.+
T Consensus       210 C~a~n~~~~~~~~~~v~~  227 (457)
T 1hzh_H          210 CNVNHKPSNTKVDKKAEP  227 (457)
T ss_dssp             EEEEEGGGTEEEEEECCC
T ss_pred             EEEEeCCCCcceeEEecc
Confidence            999998877655554443

>1nko_A Sialic acid binding IG-like lectin 7; immunoglobulin, siglec7, immune system; 1.45A {Homo sapiens} SCOP: b.1.1.1 PDB: 2g5r_A* 1o7v_A* 2df3_A* 1o7s_A* 2hrl_A*

Probab=98.95  E-value=5.6e-09  Score=66.42  Aligned_cols=92  Identities=13%  Similarity=0.203  Sum_probs=59.5

Q ss_pred             EeecCCeEEecCCcEEEEEEEe-------ccCCCeeEEEeCCEE------CC------------CCCeEEEe--cCCEEE
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLS-------GKPPPTVKWYKGNRE------LS------------KRDYSMSY--SDGVVS  113 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~-------g~p~p~i~W~~~~~~------~~------------~~~~~~~~--~~~~~~  113 (168)
                      ...+....+.+|+++.|.|...       ......+.|++....      +.            ..++.+..  ..+..+
T Consensus        10 ~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   89 (132)
T 1nko_A           10 LTMQSSVTVQEGMCVHVRCSFSYPVDSDTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCT   89 (132)
T ss_dssp             EEECSEEEEETTCCEEECEEEECCCCTTTTTSCCEEEEEEC-----CCSCSEESCTTCCCCGGGTTTEEECSCGGGTBCC
T ss_pred             EeCCCEEEEcCCCeEEEEccccCCCccccCCCccEEEEEECCCCCCcccEEEeCCCccccccccCccEEEeCCCCCCceE
Confidence            3456667889999999999987       345678999986531      10            02222221  123457


Q ss_pred             EEEccCCCCCCeEEEEEEEeCCcce---EEEEEEEEeeCCCc
Q psy12421        114 MEIIDCKPEDSGEYKCVATNKHGTD---ETNCVVIVESEEES  152 (168)
Q Consensus       114 l~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~~p~~  152 (168)
                      |.|.+++.+|+|.|.|.+.+.....   .....|.|..++..
T Consensus        90 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V~~~~~~  131 (132)
T 1nko_A           90 LSIRDARMSDAGRYFFRMEKGNIKWNYKYDQLSVNVTALTHR  131 (132)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTEEEECTTSCEEEEEECCC--
T ss_pred             EEEcccCcccCeeEEEEEEcCCCcccccCCceEEEecccCCC
Confidence            9999999999999999998754211   12456677665543

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=98.94  E-value=2.4e-10  Score=80.38  Aligned_cols=83  Identities=22%  Similarity=0.328  Sum_probs=57.1

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEEeCCEECCCC-CeEE---EecCC----EEEEEEccCCCCCCe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWYKGNRELSKR-DYSM---SYSDG----VVSMEIIDCKPEDSG  125 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~-~~~~---~~~~~----~~~l~i~~~~~~d~G  125 (168)
                      .+|.+........+..|+.+.|.|.+.|. |.+ .+.|++++..+... ....   ...++    ...|.|..+...|.|
T Consensus       149 ~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g  228 (252)
T 3bkj_L          149 AAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHN  228 (252)
T ss_dssp             BCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEEECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCC
T ss_pred             cCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCeecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCC
Confidence            45776654444334468899999999984 443 79999999877543 1100   01122    135889999899999


Q ss_pred             EEEEEEEeCCcce
Q psy12421        126 EYKCVATNKHGTD  138 (168)
Q Consensus       126 ~Y~C~a~n~~g~~  138 (168)
                      .|+|.|.|.....
T Consensus       229 ~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          229 SYTCEATHKTSTS  241 (252)
T ss_dssp             EEEEEEECTTCSS
T ss_pred             eEEEEEEeCCCCC
Confidence            9999999986554

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1

Probab=98.94  E-value=3.9e-09  Score=66.14  Aligned_cols=87  Identities=16%  Similarity=0.134  Sum_probs=55.8

Q ss_pred             cCCeEEecCCcEEEEEEEecc----CCCeeEEEeCCE-------ECC--------------CCCeEEEe--cCCEEEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGK----PPPTVKWYKGNR-------ELS--------------KRDYSMSY--SDGVVSMEI  116 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~----p~p~i~W~~~~~-------~~~--------------~~~~~~~~--~~~~~~l~i  116 (168)
                      +....+.+|+++.|.|.+...    +.+.+.|++++.       .+.              ..+..+..  ..+..+|.|
T Consensus         6 ~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (124)
T 1neu_A            6 DREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSIVI   85 (124)
T ss_dssp             CSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCEEE
T ss_pred             CCeEEEEeCCeEEEEeEEeCCCCCCCceEEEEEEcCCCCCceEEEEEecCCeeccccCccccCcEEEecCCcCCeEEEEE
Confidence            345678899999999998643    567899997532       000              11111110  112337999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcc--eEEEEEEEEeeCC
Q psy12421        117 IDCKPEDSGEYKCVATNKHGT--DETNCVVIVESEE  150 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~~~p  150 (168)
                      .+++.+|+|.|.|.+.+..+.  ....+.|.|...|
T Consensus        86 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~v~L~V~~~p  121 (124)
T 1neu_A           86 HNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEKV  121 (124)
T ss_dssp             CSCCGGGCEEEEEEEEC----CCEEEEEEEEEEC--
T ss_pred             ccCChhhCEEEEEEEEcCCCCcCcEeeEEEEEecCC
Confidence            999999999999999988764  4667778887654

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.94  E-value=7e-09  Score=64.34  Aligned_cols=75  Identities=20%  Similarity=0.339  Sum_probs=54.9

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE----CC-CCCeEEEe--cCCEEEEEEccCCCCCCeEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE----LS-KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~----~~-~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +...+....+.+|++++|.|.+.+.+  .+.+.|+++.  ..    +. ..++....  .....+|.|.+++.+|+|.|.
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   82 (113)
T 1sq2_N            3 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEEeCCCCEEEEEECCCChhhCEEEE
Confidence            34456677889999999999998765  5789999863  21    11 13343322  234568999999999999999


Q ss_pred             EEEEeC
Q psy12421        129 CVATNK  134 (168)
Q Consensus       129 C~a~n~  134 (168)
                      |.+.+.
T Consensus        83 C~~~~~   88 (113)
T 1sq2_N           83 CGLGVA   88 (113)
T ss_dssp             EEECBT
T ss_pred             EEEEeC
Confidence            999873

>2h32_A Immunoglobulin IOTA chain; beta sheets, V and C-type IG folds, immune system; 2.70A {Homo sapiens}

Probab=98.94  E-value=2.4e-09  Score=67.79  Aligned_cols=92  Identities=21%  Similarity=0.272  Sum_probs=57.5

Q ss_pred             cCCeEEecCCcEEEEEEEecc---CCCeeEEEeCC--E---EC-C-------------CCCeEEE--ecCCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGK---PPPTVKWYKGN--R---EL-S-------------KRDYSMS--YSDGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~---p~p~i~W~~~~--~---~~-~-------------~~~~~~~--~~~~~~~l~i~~~  119 (168)
                      +....+.+|++++|.|...+.   ....+.||+..  .   .+ .             ..++...  ...+...|.|.++
T Consensus         7 p~~v~v~~G~~vtL~C~~s~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~~~~sL~I~~~   86 (126)
T 2h32_A            7 PPAMSSALGTTIRLTCTLRNDHDIGVYSVYWYQQRPGHPPRFLLRYFSQSDKSQGPQVPPRFSGSKDVARNRGYLSISEL   86 (126)
T ss_dssp             CSEEEEETTCCEEEEEEECTTSCGGGCEEEEEEECTTSCCEEEEEEEETTEEEECTTCCTTEEEEEEGGGTEEEEEECSC
T ss_pred             CCCEEECCCCCEEEEEEecCCCccccceEEEEEECCCCCCEEEEEEECCCCEEeCCCCCCCEEEEEeCCCCeEEEEECCC
Confidence            345678899999999998764   35689999743  1   11 0             1233333  2345568999999


Q ss_pred             CCCCCeEEEEEEEeCCcceEEEEEEEEeeCCCchhh
Q psy12421        120 KPEDSGEYKCVATNKHGTDETNCVVIVESEEESKEQ  155 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~  155 (168)
                      +.+|+|.|.|.+.+..+.......|.|...+..+..
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~t~l~v~~~~~~~~~  122 (126)
T 2h32_A           87 QPEDEAMYYCAMGARSSEKEEREREWEEEMEPTAAR  122 (126)
T ss_dssp             CGGGCEEEEEEEECSCCCCCCTTCC-----------
T ss_pred             ChhHCEEEEEEEEcCCCCcceeEEEeeccCCCcccc
Confidence            999999999999988776655555666554444433

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.94  E-value=7e-10  Score=76.84  Aligned_cols=78  Identities=21%  Similarity=0.224  Sum_probs=57.3

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccC-CC-eeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKP-PP-TVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCK  120 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p-~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~  120 (168)
                      +.+.. +....+.+|+++.|.|.+.+.+ .+ .+.|+++.  ..+             ...++......+...|.|.+++
T Consensus        21 ~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~   99 (234)
T 2j6e_L           21 SVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKSGTSASLAISGLR   99 (234)
T ss_dssp             CCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEETTEEEEEEESCC
T ss_pred             cEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEecCCeEEEEECCCC
Confidence            33443 5667788999999999998854 34 69999863  211             0134444434555689999999


Q ss_pred             CCCCeEEEEEEEeCCc
Q psy12421        121 PEDSGEYKCVATNKHG  136 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g  136 (168)
                      .+|+|.|.|.+.|..+
T Consensus       100 ~~D~G~Y~C~~~~~~~  115 (234)
T 2j6e_L          100 SEDEADYYCATWDDSL  115 (234)
T ss_dssp             STTCSEEEEEEEETTT
T ss_pred             HHHCEEEEEEEEcCCc
Confidence            9999999999999987

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.94  E-value=2.2e-09  Score=74.44  Aligned_cols=87  Identities=15%  Similarity=0.246  Sum_probs=55.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEEeCCEECCCCCeEEEecCC----EEEEEEccCCCCCCeEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWYKGNRELSKRDYSMSYSDG----VVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C  129 (168)
                      .+|.+........+..|+.+.|.|.+.|. |.| .+.|++++..+...........+    ...|.|......| |.|+|
T Consensus       129 ~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC  207 (228)
T 3bae_H          129 TAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITC  207 (228)
T ss_dssp             BCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEE
T ss_pred             CCCEEEEecccccccCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEE
Confidence            45666544434446789999999999986 777 99999987653211111011112    2358888887755 99999


Q ss_pred             EEEeCCcceEEEEE
Q psy12421        130 VATNKHGTDETNCV  143 (168)
Q Consensus       130 ~a~n~~g~~~~~~~  143 (168)
                      .|.|..|.......
T Consensus       208 ~~~n~~~~~~~~~~  221 (228)
T 3bae_H          208 NVAHPASSTKVDKK  221 (228)
T ss_dssp             EEEEGGGTEEEEEE
T ss_pred             EEEECCCCCCEEEE
Confidence            99999887655443

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=98.94  E-value=5.6e-09  Score=64.67  Aligned_cols=75  Identities=20%  Similarity=0.270  Sum_probs=55.2

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC-----CCeeEEEeCC--E---EC----------CCCCeEEEecCCEEEEEEccC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP-----PPTVKWYKGN--R---EL----------SKRDYSMSYSDGVVSMEIIDC  119 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p-----~p~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~l~i~~~  119 (168)
                      +...+....+.+|++++|.|.+.+.+     .+.+.||+..  .   .+          ...++......+...|.|.++
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~v   83 (113)
T 1dlf_L            4 MTQTPLSLPVSLGNQASISCRSSQSLVHSNGNTYLHWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   83 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSC
T ss_pred             EEEeCCEEEEcCCCCEEEEEEccccccccCCCceEEEEEECCCCCCeEEEEecCccCCCCCCCEEEEccCCEEEEEECCC
Confidence            34456667889999999999998765     4789999853  1   11          013344433445667999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12421        120 KPEDSGEYKCVATNK  134 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~  134 (168)
                      +.+|+|.|.|.+.+.
T Consensus        84 ~~~DsG~Y~C~~~~~   98 (113)
T 1dlf_L           84 EAEDLGVYFCSQSTH   98 (113)
T ss_dssp             CGGGCEEEEEEECSS
T ss_pred             ChHHCEEEEEEEecC
Confidence            999999999999875

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.94  E-value=2.1e-09  Score=72.76  Aligned_cols=83  Identities=18%  Similarity=0.345  Sum_probs=60.5

Q ss_pred             eEEecCCcEEEEEEEe----ccCCCeeEEEeCCEECC-------------CCCeEEEecCCEEEEEEccCCCCCCeEEEE
Q psy12421         67 RVMQVRQTCKLLCCLS----GKPPPTVKWYKGNRELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~----g~p~p~i~W~~~~~~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      ..+.+|+++.|.|.+.    +.|.+.+.|++++..+.             ..+..+.. .+..+|.|.+++.+|+|.|.|
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~-~~~~~L~I~~v~~~D~G~Y~C   82 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDI-TNNLSIVILALRPSDEGTYEC   82 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEES-TTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEcc-CCCcEEEEecccchhCeEEEE
Confidence            5678899999999985    45788999999987652             11111111 222379999999999999999


Q ss_pred             EEEeCCcce-----EEEEEEEEeeCC
Q psy12421        130 VATNKHGTD-----ETNCVVIVESEE  150 (168)
Q Consensus       130 ~a~n~~g~~-----~~~~~l~v~~~p  150 (168)
                      .+.|..|..     ...+.|.|..++
T Consensus        83 ~~~~~~g~~~~~~~~~~~~l~V~~~~  108 (201)
T 1dr9_A           83 VVLKYEKDAFKREHLAEVTLSVKADF  108 (201)
T ss_dssp             EEEECCTTSCEEEEEEEEEEEEECCC
T ss_pred             EEEcCCCCccccccccEEEEEEcCCC
Confidence            999987654     346667776653

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=98.94  E-value=4.3e-09  Score=72.43  Aligned_cols=86  Identities=19%  Similarity=0.305  Sum_probs=59.2

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C-----------------CCCCeEEEec--CCEEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L-----------------SKRDYSMSYS--DGVVSMEI  116 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~-----------------~~~~~~~~~~--~~~~~l~i  116 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..   +                 ...++.+...  .+..+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (222)
T 1q9r_B            6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM   85 (222)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence            34456788999999999998865  7899999853  11   0                 0123333322  34568999


Q ss_pred             ccCCCCCCeEEEEEEEeCCc-----ceEEEEEEEEee
Q psy12421        117 IDCKPEDSGEYKCVATNKHG-----TDETNCVVIVES  148 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~v~~  148 (168)
                      .+++.+|+|.|.|.+.|..|     .......|.|..
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~  122 (222)
T 1q9r_B           86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSA  122 (222)
T ss_dssp             CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECS
T ss_pred             CcCCcccCeEEEEEEeccCCcccceEeCCceEEEecc
Confidence            99999999999999998764     112234566654

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=98.94  E-value=2.1e-09  Score=65.80  Aligned_cols=82  Identities=18%  Similarity=0.268  Sum_probs=55.7

Q ss_pred             CeEEecCCcEEEEEEEeccCC---CeeEEEeCCEEC----------C--------CCCeEEEe--cCCEEEEEEccCCCC
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNREL----------S--------KRDYSMSY--SDGVVSMEIIDCKPE  122 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~---p~i~W~~~~~~~----------~--------~~~~~~~~--~~~~~~l~i~~~~~~  122 (168)
                      ...+.+|+++.|.|.+.+.+.   ..+.|++.....          .        ..++.+..  ..+..+|.|.+++.+
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~   82 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQLKGDLNKGDVSLIIKNVTLD   82 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTCCCCCEEEESSSCCSSSCSSEEEEECSSSEEEESCTTEEECSCGGGTBCCEEECSCCGG
T ss_pred             CEEEEcCCCEEEEEEeECCCCCCeEEEEEEecCCCCCCceeEEEEcCCcCccccccceEEEccCccCCcEeEEEccCCCh
Confidence            356778999999999876543   348999865210          0        11111110  112347999999999


Q ss_pred             CCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421        123 DSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus       123 d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      |+|.|.|.+.+..+.....+.|.|.
T Consensus        83 D~G~Y~C~v~~~~~~~~~~~~l~V~  107 (109)
T 2oyp_A           83 DHGTYCCRIQFPGLMNDKKLELKLD  107 (109)
T ss_dssp             GCEEEEEEECCSSTTCCEEEEEEEE
T ss_pred             hCeEEEEEEEcCCcccceEEEEEEE
Confidence            9999999999987666666666654

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=98.48  E-value=9.1e-11  Score=72.58  Aligned_cols=73  Identities=19%  Similarity=0.345  Sum_probs=53.0

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC-------------CCCCeEEEe--cCCEEEEEEccCCCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL-------------SKRDYSMSY--SDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~-------------~~~~~~~~~--~~~~~~l~i~~~~~~d~  124 (168)
                      ..+....+.+|++++|.|.+.+.+.+.+.|+++..  .+             ...++.+..  ..+..+|.|.+++.+|+
T Consensus         4 Q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v~~~Ds   83 (110)
T 1u3h_A            4 QSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGDS   83 (110)
Confidence            34556778899999999999888888999998642  11             112222221  22334799999999999


Q ss_pred             eEEEEEEEeC
Q psy12421        125 GEYKCVATNK  134 (168)
Q Consensus       125 G~Y~C~a~n~  134 (168)
                      |.|.|.+.|.
T Consensus        84 G~Y~C~~~~~   93 (110)
T 1u3h_A           84 ATYFCAASAN   93 (110)
Confidence            9999999875

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.94  E-value=7.3e-10  Score=76.78  Aligned_cols=118  Identities=16%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             CceeEEEEeCCCCCCCCCCcccceec---cCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEeccCC-C-eeE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVRR---REPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-P-TVK   90 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p-~i~   90 (168)
                      .+.+.+++..|.|.  |.|.......   .....+.+.  ....+|.+...+.......|+.+.|.|.+.|.++ + .+.
T Consensus        94 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~l~V~--~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  169 (233)
T 3bqu_C           94 VFTIENMLSEDVAD--YYCLQSDNLPYTFGGGTNLEIK--RADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVK  169 (233)
T ss_dssp             EEC-----CCCCSE--EEEEECSSSSCCBCCCCBC-----CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEE
T ss_pred             EEEECCCCHHHCEE--EEEEEecCCceeecCCEEEEEe--CCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEE
Confidence            46678888888766  4333221110   011122221  2224677765444433447999999999998544 3 799


Q ss_pred             EEeCCEECCCC-CeEE--E-ecCC----EEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         91 WYKGNRELSKR-DYSM--S-YSDG----VVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        91 W~~~~~~~~~~-~~~~--~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      |++++..+... ....  . ..++    ...|.|......|.|.|+|.|.|....
T Consensus       170 W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          170 WKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTST  224 (233)
T ss_dssp             EEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---
T ss_pred             EEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            99999876543 1110  0 0111    235888888889999999999997543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=98.94  E-value=2.6e-10  Score=76.31  Aligned_cols=70  Identities=23%  Similarity=0.329  Sum_probs=52.2

Q ss_pred             eEEecCCcEEEEEEEeccCCCeeEEEeCCEE--CC-------------CCCeEEEe---cCCEEEEEEccCCCCCCeEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRE--LS-------------KRDYSMSY---SDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~--~~-------------~~~~~~~~---~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      ..+.+|+++.|.|.+.+.|.+.+.|++++..  +.             ..+.....   .++..+|.|.+++..|+|.|.
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~   84 (184)
T 2ny1_B            5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   84 (184)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEEE
Confidence            4678999999999999999999999998752  21             01111111   223346999999999999999


Q ss_pred             EEEEeCCc
Q psy12421        129 CVATNKHG  136 (168)
Q Consensus       129 C~a~n~~g  136 (168)
                      |.+.|..|
T Consensus        85 C~~~~~~~   92 (184)
T 2ny1_B           85 CEVEDQKE   92 (184)
T ss_dssp             EEETTEEE
T ss_pred             EEEEcCCC
Confidence            99988755

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=98.93  E-value=8.4e-10  Score=77.88  Aligned_cols=78  Identities=26%  Similarity=0.338  Sum_probs=55.8

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCE--ECC-------------CCCeEEE--ecCCEEEEEEcc
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNR--ELS-------------KRDYSMS--YSDGVVSMEIID  118 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~--~~~-------------~~~~~~~--~~~~~~~l~i~~  118 (168)
                      +|.+...+....+.+|+++.|.|.+.+. |.+.+.|+++..  .+.             ..++.+.  .......|.|.+
T Consensus       136 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  215 (259)
T 3omz_A          136 AQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPSKEMIFLIRQGSDEQNAKSGRYSVNFKKAAKSVALTISA  215 (259)
T ss_dssp             -CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTTCCEEEEEEEETTSCCCEETTEEECCBGGGTBCCEEESS
T ss_pred             CeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCCCCcEEEEEECCcCCcccCCeEEEEEcCcCCEEEEEECC
Confidence            4667777778899999999999998874 889999998531  000             1122221  112233699999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12421        119 CKPEDSGEYKCVATNK  134 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~  134 (168)
                      ++.+|+|.|.|.+.+.
T Consensus       216 v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          216 LQLEDSAKYFCALGES  231 (259)
T ss_dssp             CCGGGCSEEEEEEESC
T ss_pred             CChhHCEEEEEEEeCc
Confidence            9999999999999853

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=98.93  E-value=5.6e-09  Score=65.95  Aligned_cols=83  Identities=20%  Similarity=0.272  Sum_probs=56.6

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCC----eeEEEeCC----------------EECCC-----CCeEEEec----------
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPP----TVKWYKGN----------------RELSK-----RDYSMSYS----------  108 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p----~i~W~~~~----------------~~~~~-----~~~~~~~~----------  108 (168)
                      +....+.+|+++.|.|.+.+.+.+    .+.|++..                .....     .+..+...          
T Consensus         9 p~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~g~~~~~   88 (128)
T 3r0n_A            9 LPEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPGSERLSFVSAKQSTGQDTEA   88 (128)
T ss_dssp             CSEEECCTTSCEEECCEEESCCTTCEEEEEEEECTTSCGGGCEEEEEETTTEEECCSSSSCGGGEEESSCBCCCSTTCCC
T ss_pred             CCeEEEEcCCCEEEEEEeecCCCCCcEEEEEEEEeCCCCCCeeEEEEecccCcccccccccCCcEEEecccccccccccc
Confidence            334667789999999999887665    88999962                22211     11111111          


Q ss_pred             -CCEEEEEEccCCCCCCeEEEEEEEe-CCcceEEEEEEEE
Q psy12421        109 -DGVVSMEIIDCKPEDSGEYKCVATN-KHGTDETNCVVIV  146 (168)
Q Consensus       109 -~~~~~l~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~v  146 (168)
                       ....+|.|.+++.+|+|.|.|.+.+ ..|.......|.|
T Consensus        89 ~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~L~V  128 (128)
T 3r0n_A           89 ELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV  128 (128)
T ss_dssp             BCSBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEC
T ss_pred             CCCCeEEEEccCCchhCeEEEEEEEeCCCCCcccEEEEEC
Confidence             1134799999999999999998765 5677777776654

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.93  E-value=2.7e-10  Score=79.00  Aligned_cols=81  Identities=16%  Similarity=0.241  Sum_probs=47.7

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC-----------C--CCCeEEEecCCEEEEEEccCCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL-----------S--KRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~-----------~--~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      .+.+...+....+.+|+++.|.|.+.+.|.+.+.|+++..  .+           .  ..++......+..+|.|.+++.
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~v~~  102 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSGYGTDFVFTIENMLS  102 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCEEEEEEEEC-----C
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeeccCCEEEEEECCCCH
Confidence            4566666778889999999999999998888999998531  11           0  1122221122334799999999


Q ss_pred             CCCeEEEEEEEeCCcc
Q psy12421        122 EDSGEYKCVATNKHGT  137 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~  137 (168)
                      +|+|.|.|.+.|..+.
T Consensus       103 ~D~G~Y~C~~~~~~~~  118 (233)
T 3bqu_C          103 EDVADYYCLQSDNLPY  118 (233)
T ss_dssp             CCCSEEEEEECSSSSC
T ss_pred             HHCEEEEEEEecCCce
Confidence            9999999999987653

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=98.93  E-value=4e-09  Score=73.07  Aligned_cols=74  Identities=26%  Similarity=0.419  Sum_probs=54.4

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC----CeeEEEeCC--EECC-----------------CCCeEEEe--cCCEEEEEEc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP----PTVKWYKGN--RELS-----------------KRDYSMSY--SDGVVSMEII  117 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~----p~i~W~~~~--~~~~-----------------~~~~~~~~--~~~~~~l~i~  117 (168)
                      .+....+.+|+++.|.|.+.+.|.    +.+.|+++.  ..+.                 ..++.+..  ..+..+|.|.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (228)
T 3bae_H            6 ESGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKIT   85 (228)
T ss_dssp             EECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEEC
T ss_pred             CCCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEc
Confidence            355678889999999999998774    899999852  2110                 12333322  1234689999


Q ss_pred             cCCCCCCeEEEEEEEeCCc
Q psy12421        118 DCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~~g  136 (168)
                      +++.+|+|.|.|.+.|..|
T Consensus        86 ~v~~~D~G~Y~C~~~~~~g  104 (228)
T 3bae_H           86 SVDTADTATYYCARRGFYG  104 (228)
T ss_dssp             SCCGGGCEEEEEEEEEEST
T ss_pred             CCCcccCEEEEEEEecCCC
Confidence            9999999999999999765

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.93  E-value=6.8e-10  Score=76.57  Aligned_cols=84  Identities=19%  Similarity=0.309  Sum_probs=59.1

Q ss_pred             cCCCeEEeecCCeE--EecCCcEEEEEEEecc---CC-CeeEEEeCCEECCCCCeEE--EecCC----EEEEEEccCCCC
Q psy12421         55 ESAPNFTFLLRPRV--MQVRQTCKLLCCLSGK---PP-PTVKWYKGNRELSKRDYSM--SYSDG----VVSMEIIDCKPE  122 (168)
Q Consensus        55 ~~~p~~~~~~~~~~--~~~g~~~~l~C~~~g~---p~-p~i~W~~~~~~~~~~~~~~--~~~~~----~~~l~i~~~~~~  122 (168)
                      ..+|.+...+....  +.+|+++.|.|.+.|.   |. +.+.|++++..+.......  ...++    ...|.|.++...
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   86 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTIRVVSTLPIQHQDWM   86 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECCCEEEEEEETTTTEEEEEEEEECCHHHHH
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccCcccccccccCCCeEEEEEEEEEcHHHcC
Confidence            34566665555544  7889999999999987   33 7899999997764321110  11111    236899999999


Q ss_pred             CCeEEEEEEEeCCcce
Q psy12421        123 DSGEYKCVATNKHGTD  138 (168)
Q Consensus       123 d~G~Y~C~a~n~~g~~  138 (168)
                      |.|.|.|.+.|..+..
T Consensus        87 D~g~Y~C~~~~~~~~~  102 (218)
T 2rgs_A           87 SGKEFKCKVNNKDLPS  102 (218)
T ss_dssp             TTCCEEEEEEETTCSS
T ss_pred             CCCeEEEEEECCcCCC
Confidence            9999999999987754

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus}

Probab=98.93  E-value=4.2e-09  Score=65.29  Aligned_cols=83  Identities=23%  Similarity=0.312  Sum_probs=55.7

Q ss_pred             CeEEecCCcEEEEEEEec-cCCCeeEEEeCCEE--------C----------CCCCeEEE--ecCCEEEEEEccCCCCCC
Q psy12421         66 PRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRE--------L----------SKRDYSMS--YSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~--------~----------~~~~~~~~--~~~~~~~l~i~~~~~~d~  124 (168)
                      ...+.+|+++.|.|...+ .....+.|++....        +          ...++.+.  ...+..+|.|.+++.+|+
T Consensus         6 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~Ds   85 (116)
T 2or8_A            6 EVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNLKGHISEGDVSLTIENSVESDS   85 (116)
T ss_dssp             EEEEETTSCEEECCBCCCTTCCCCEEEEESCCCSSSCTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCGGGC
T ss_pred             eEEEEeCCcEEEEEEeeCCCCCcEEEEEEECCCCCCceEEEEEeCCcccCcCCCCeEEEecCCCCCeEEEEECCCCcccC
Confidence            467889999999999865 34667999997521        0          01111110  112334699999999999


Q ss_pred             eEEEEEEEeCCcce--EEEEEEEEee
Q psy12421        125 GEYKCVATNKHGTD--ETNCVVIVES  148 (168)
Q Consensus       125 G~Y~C~a~n~~g~~--~~~~~l~v~~  148 (168)
                      |.|.|.+.+..+..  ...+.|.|..
T Consensus        86 G~Y~C~v~~~~~~~~~~~~~~l~V~p  111 (116)
T 2or8_A           86 GLYCCRVEIPGWFNDQKVTFSLQVKP  111 (116)
T ss_dssp             EEEEEEECCSSTTCCEEEEEEEEEEC
T ss_pred             EEEEEEEEcCCcccccEEEEEEEECC
Confidence            99999999875443  5555665543

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A

Probab=98.92  E-value=1.7e-09  Score=78.95  Aligned_cols=83  Identities=16%  Similarity=0.229  Sum_probs=63.4

Q ss_pred             eEEecCCcEEEEEEEeccC-CCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKP-PPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      ..+..|+++.|.|.+.+.+ .+.+.|++++..+..........++  .|.|.++...|+|.|+|.   ..|.....+.|.
T Consensus        16 v~~~~G~~v~l~C~~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~d~G~Y~C~---~~g~~~~~~~L~   90 (325)
T 1n26_A           16 LTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR--RLLLRSVQLHDSGNYSCY---RAGRPAGTVHLL   90 (325)
T ss_dssp             EEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESS--EEEECSCCGGGCEEEEEE---SSSSCSCEEEEE
T ss_pred             EECCCCCcEEEEeCCCCCCCCceEEEEECCccCCccccccccccc--eEEecccchhhCeEeEEE---eCCEEeeeEEEE
Confidence            4447899999999988755 7899999987655322222233344  799999999999999998   367777889999


Q ss_pred             EeeCCCchh
Q psy12421        146 VESEEESKE  154 (168)
Q Consensus       146 v~~~p~~~~  154 (168)
                      |..+|..+.
T Consensus        91 V~~pP~~P~   99 (325)
T 1n26_A           91 VDVPPEEPQ   99 (325)
T ss_dssp             ECCCCCCCC
T ss_pred             eccCCCCCc
Confidence            988776654

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=98.92  E-value=7.1e-09  Score=63.76  Aligned_cols=75  Identities=17%  Similarity=0.258  Sum_probs=52.5

Q ss_pred             eEEecCCcEEEEEEEeccCCC-----eeEEEeCCEE-C----C------------CCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPP-----TVKWYKGNRE-L----S------------KRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p-----~i~W~~~~~~-~----~------------~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      ..+.+|+++.|.|.+.+.|.+     .+.|++++.. +    .            ..+......+.  +|.|.+++.+|+
T Consensus         4 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--sL~I~~v~~~D~   81 (110)
T 1ncn_A            4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSW--TLRLHNLQIKDK   81 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTT--EEEECSCCGGGC
T ss_pred             EEEEeCCCEEEEeEeCCCCcCCCccEEEEEEeCCCccEEEEECCcccccccCcccCCcEEEECCCE--EEEEcCCChHHC
Confidence            467789999999998765544     4899997531 0    0            01122222223  799999999999


Q ss_pred             eEEEEEEEeCCcceEEEEE
Q psy12421        125 GEYKCVATNKHGTDETNCV  143 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~  143 (168)
                      |.|.|.+.+..+.......
T Consensus        82 G~Y~C~v~~~~~~~~~~~~  100 (110)
T 1ncn_A           82 GLYQCIIHHKKPTGMIRIH  100 (110)
T ss_dssp             EEEEEEEEEECSSSEEEEE
T ss_pred             EEEEEEEEcCCCCceEEEE
Confidence            9999999998776554443

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=98.92  E-value=1.1e-08  Score=64.67  Aligned_cols=75  Identities=19%  Similarity=0.393  Sum_probs=52.2

Q ss_pred             EeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCEE----CC-C-----CCeEEE-----ecCCEEEEEEccCCCCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRE----LS-K-----RDYSMS-----YSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~----~~-~-----~~~~~~-----~~~~~~~l~i~~~~~~d~  124 (168)
                      ...+....+.+|++++|.|.+.+. +.+.+.||++...    +. .     .++...     .......|.|.+++.+|+
T Consensus         7 ~q~p~~~~v~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~li~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~Ds   86 (127)
T 2jju_A            7 IQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGRELIYNQKEGHFPRVTTVSELTKRNNLDFSISISNITPADA   86 (127)
T ss_dssp             ECCCSEEEEETTSCEEECCEESCCCSCCCEEEEECSSTTCEEEEESSSSCCTTEEEC-------CCBCCEEECSCCGGGC
T ss_pred             EeeCCeEEEeCCCCEEEEEEEeCCCCCCEEEEEecCCCCcEEEEECCCCccCcEEeeEeeeecCCCEEEEEECCCCHHHC
Confidence            334556788899999999999875 6778999997521    10 0     111110     011234699999999999


Q ss_pred             eEEEEEEEeCC
Q psy12421        125 GEYKCVATNKH  135 (168)
Q Consensus       125 G~Y~C~a~n~~  135 (168)
                      |.|.|.+.|..
T Consensus        87 G~Y~C~~~~~~   97 (127)
T 2jju_A           87 GTYYCVKFRKG   97 (127)
T ss_dssp             EEEEEEEEECC
T ss_pred             EEEEEEEEcCC
Confidence            99999999863

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=98.91  E-value=1.3e-08  Score=70.37  Aligned_cols=86  Identities=20%  Similarity=0.293  Sum_probs=59.3

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--E---EC---------------CCCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--R---EL---------------SKRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~---~~---------------~~~~~~~~~--~~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++.  .   .+               ...++.+..  ..+..+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (223)
T 1dee_B            6 ESGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNS   85 (223)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECC
Confidence            34567888999999999998865  5789999853  1   11               012333332  22456899999


Q ss_pred             CCCCCCeEEEEEEEeCCc----c--eEEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHG----T--DETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g----~--~~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|..|    .  ......|.|..
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~  121 (223)
T 1dee_B           86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSS  121 (223)
T ss_dssp             CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECS
T ss_pred             CCHHHCEEEEEEEeccccCcccceeecCcEEEEEcc
Confidence            999999999999998753    1  11234677763

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.91  E-value=5.5e-09  Score=71.88  Aligned_cols=118  Identities=11%  Similarity=0.173  Sum_probs=69.8

Q ss_pred             ceeEEEEeCCCCCCCCCCccccee----ccCcceeeEeeecccCCCeEE-eecCCeEEecCCcEEEEEEEec-cCC--Ce
Q psy12421         17 NPRLRTRAIPKTIPAYVPEVQQVR----RREPLQITFWQETVESAPNFT-FLLRPRVMQVRQTCKLLCCLSG-KPP--PT   88 (168)
Q Consensus        17 ~~~~~~~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~g~~~~l~C~~~g-~p~--p~   88 (168)
                      |.+.+++..|.+.  |.|......    ......+.+.. ....+|.+. ..+...  ..|+.+.|.|.+.+ .|.  +.
T Consensus        83 L~I~~v~~~DsG~--Y~C~~~~~~~~~~~~~~~~l~V~~-~~~~~p~v~~~~~~~~--~~g~~v~L~C~~~~~~P~~~~~  157 (221)
T 3m8o_H           83 LQMNSLKSDDTAM--YYCVIRGDVYNRQWGQGTLVTVSS-ASPTSPKVFPLSLCST--QPDGNVVIACLVQGFFPQEPLS  157 (221)
T ss_dssp             EEECSCCGGGCEE--EEEEEESCTTCCCBBCCEEEEECS-CCCBCCEEEEEECCSC--CCTTEEEEEEEEEEEBSSCSEE
T ss_pred             EEECCCCHHHCEE--EEEEEECCChhheECCCEEEEEec-CCCCCCeEEEecCccc--ccCCCEEEEEEEEeeECCCCEE
Confidence            6667778888666  433322111    11112222221 223456665 233333  78999999999998 665  38


Q ss_pred             eEEEeCCEECCCCCeE-EE-ecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceE
Q psy12421         89 VKWYKGNRELSKRDYS-MS-YSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDE  139 (168)
Q Consensus        89 i~W~~~~~~~~~~~~~-~~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  139 (168)
                      +.|++++..+...... .. ..++    ...|.|......|.|.|+|.|.|..+...
T Consensus       158 v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC~v~~~~~~~~  214 (221)
T 3m8o_H          158 VTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQ  214 (221)
T ss_dssp             EEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEEEEEETTSCCE
T ss_pred             EEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEEEEEECCCCce
Confidence            9999988655210000 00 1111    12588998999999999999999876543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=98.91  E-value=7.4e-10  Score=81.33  Aligned_cols=121  Identities=15%  Similarity=0.132  Sum_probs=71.9

Q ss_pred             CceeEEEEeCCCCCCCCCCcccce--eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CC-CeeEE
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQV--RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PP-PTVKW   91 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i~W   91 (168)
                      .|.+.+++..|.|.  |.|.....  .......+.+.. ....+|.+........+..|+.+.|.|.+.|. |. +.+.|
T Consensus        80 ~L~I~~v~~~D~G~--Y~C~~~n~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W  156 (344)
T 1za6_B           80 YVELSSLRSEDTAV--YFCTRSLNMAYWGQGTLVTVSS-ASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSW  156 (344)
T ss_dssp             EEEECSCCGGGCEE--EEEEETTTTCEECCCEEEEECS-SCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEE
T ss_pred             EEEECCCCcccCEE--EEEEEecCcceecCcEEEEEec-CCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEE
Confidence            46677888888766  43332221  111122222221 11245666544433445689999999999986 54 79999


Q ss_pred             EeCCEECCCCC-eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEE
Q psy12421         92 YKGNRELSKRD-YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDET  140 (168)
Q Consensus        92 ~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  140 (168)
                      ++++..+.... ......++    ...|.|..+...| |.|+|.|.|..|....
T Consensus       157 ~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~~  209 (344)
T 1za6_B          157 NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  209 (344)
T ss_dssp             TTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEEE
T ss_pred             ecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccc
Confidence            99987532100 00111111    1268888888777 9999999999886543

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.91  E-value=7.8e-10  Score=86.48  Aligned_cols=86  Identities=21%  Similarity=0.353  Sum_probs=66.3

Q ss_pred             eEEecCCcEEEEEEE-eccCCCeeEEEeCCEECCC------------CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         67 RVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSK------------RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~------------~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+.+|++++|.|.+ .+.|.+.+.|++++..+..            ........++  +|.|.+++.+|+|.|+|.+.|
T Consensus       376 ~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--~L~i~~v~~~D~G~Y~C~~~n  453 (581)
T 3o3u_N          376 ITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPNG--SLFLPAVGIQDEGIFRCQAMN  453 (581)
T ss_dssp             EEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTTS--CEEESSCCGGGCEEEEEEEEC
T ss_pred             cceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCCc--eEEEeccccccCeEEEEEEEc
Confidence            567899999999998 7899999999998652210            1111222334  699999999999999999999


Q ss_pred             CCcce-EEEEEEEEeeCCCchh
Q psy12421        134 KHGTD-ETNCVVIVESEEESKE  154 (168)
Q Consensus       134 ~~g~~-~~~~~l~v~~~p~~~~  154 (168)
                      ..|.. .....|.|..+|..+.
T Consensus       454 ~~~~~~~~~~~l~V~~~~~~p~  475 (581)
T 3o3u_N          454 RNGKETKSNYRVRVYQIPGKPE  475 (581)
T ss_dssp             TTSCEEEEEEEEEEEBCCCCCE
T ss_pred             CCCceeEEEEEEEEEcCCCCCE
Confidence            99887 7788898887665543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=98.91  E-value=3.9e-09  Score=74.17  Aligned_cols=88  Identities=14%  Similarity=0.197  Sum_probs=61.1

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C---------------CCCCeEEEe--cCCEEEEEE
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L---------------SKRDYSMSY--SDGVVSMEI  116 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~---------------~~~~~~~~~--~~~~~~l~i  116 (168)
                      +..+.+..+.+|+++.|.|.+.+.+  .+.+.|++..  ..   +               ...++.+..  ..+..+|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I   84 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLHL   84 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEEe
Confidence            3456678889999999999998844  7899999831  10   0               012333332  233556999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcce-EEEEEEEEee
Q psy12421        117 IDCKPEDSGEYKCVATNKHGTD-ETNCVVIVES  148 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  148 (168)
                      .+++.+|+|.|.|.+.|..+.. .....|.|..
T Consensus        85 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~  117 (253)
T 3uzq_A           85 SSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSA  117 (253)
T ss_dssp             CSCCGGGCEEEEEEECSSSCCEECCCEEEEECS
T ss_pred             CCCCcccCEEEEEEEeeCCccEECCCcEEEEec
Confidence            9999999999999999965553 2345566654

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A

Probab=98.90  E-value=5.5e-09  Score=64.28  Aligned_cols=81  Identities=12%  Similarity=0.151  Sum_probs=56.8

Q ss_pred             CCeEEecCCcEEEEEEE-eccCCCeeEEEeCC-EECC------------C---CCeEEEecCCEEEEEEccCCCCCCeEE
Q psy12421         65 RPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGN-RELS------------K---RDYSMSYSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~-~~~~------------~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      ....+.+|++++|.|.. .+.+.+.+.|++.. ..+.            .   .++.+  ..+..+|.|.+++.+|+|.|
T Consensus        11 ~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~~R~~~--~~~~~sL~I~~v~~~DsG~Y   88 (110)
T 2ptt_A           11 PDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKGRVYL--EENNGALHISNVRKEDKGTY   88 (110)
T ss_dssp             CSEEEETTSCEEECSCSSCCCSCSEEEEEESTTBEEEEEETTSCEEECSSTTTTTEEE--CTTTCCEEESSCCGGGCEEE
T ss_pred             CCEEEecCCcEEEeCCccCCCCcCEEEEEecCCccEEEEECCCCceeeccccCCcEEE--eCCCccEEECCCCcccCeEE
Confidence            34678899999999998 67778899999842 1110            0   12222  11223799999999999999


Q ss_pred             EEEEEeCCcceEEEEEEEEee
Q psy12421        128 KCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l~v~~  148 (168)
                      .|.+.+.. .....+.|.|.+
T Consensus        89 ~C~v~~~~-~~~~~~~L~V~d  108 (110)
T 2ptt_A           89 YMRVLRET-ENELKITLEVFD  108 (110)
T ss_dssp             EEEEESSS-BCCEEEEEEEEC
T ss_pred             EEEEEcCC-CcEEEEEEEEEc
Confidence            99998765 344466777764

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=98.90  E-value=9.6e-09  Score=63.86  Aligned_cols=74  Identities=20%  Similarity=0.307  Sum_probs=54.2

Q ss_pred             EeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCC--E---ECC-------------CCCeEEEe--cCCEEEEEEccC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGN--R---ELS-------------KRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~--~---~~~-------------~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      ...+....+.+|++++|.|.+... +...+.|++..  .   .+.             ..++.+..  ..+..+|.|.++
T Consensus         4 ~q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~   83 (116)
T 1tvd_A            4 TQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISPV   83 (116)
T ss_dssp             ECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESSC
T ss_pred             ecCCCcEEEecCCeEEEEeEeEcCCCCcEEEEEEeCCCCCcEEEEEECCcccccCcccCCCEEEEEecCCCEEEEEEccC
Confidence            345667788999999999998764 56789999853  1   110             23343332  345568999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12421        120 KPEDSGEYKCVATNK  134 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~  134 (168)
                      +.+|+|.|.|.+.+.
T Consensus        84 ~~~DsG~Y~C~~~~~   98 (116)
T 1tvd_A           84 RTEDSATYYCAFTLP   98 (116)
T ss_dssp             CGGGCEEEEEEEECT
T ss_pred             ChHHCEEEEEEEeCC
Confidence            999999999999874

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.90  E-value=9.2e-09  Score=72.38  Aligned_cols=86  Identities=21%  Similarity=0.297  Sum_probs=58.8

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C---------------CCCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L---------------SKRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~---------------~~~~~~~~~--~~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|++..  ..   +               ...++.+..  ..+...|.|.+
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS   87 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence            34456788999999999998866  7899999742  10   0               012333322  23455699999


Q ss_pred             CCCCCCeEEEEEEEeC----CcceEEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNK----HGTDETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~----~g~~~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|.    .+.......|.|..
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~  121 (256)
T 3umt_A           88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSS  121 (256)
T ss_dssp             CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC
T ss_pred             CCcccCEEEEEEEccCCCccccEECCCEEEEEcC
Confidence            9999999999999987    22233345666664

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=98.90  E-value=8.9e-09  Score=73.49  Aligned_cols=78  Identities=19%  Similarity=0.294  Sum_probs=59.6

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC------------------CCCCeEEEe-cCCEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL------------------SKRDYSMSY-SDGVVSME  115 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~------------------~~~~~~~~~-~~~~~~l~  115 (168)
                      .+.+...+....+.+|+++.|.|.+.+.+.+.+.|+++.  ..+                  ...++.+.. ..+..+|.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLT  103 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEEE
Confidence            456677777889999999999999988888999999863  110                  012333332 23456899


Q ss_pred             EccCCCCCCeEEEEEEEeC
Q psy12421        116 IIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~  134 (168)
                      |.+++.+|+|.|.|.+.|.
T Consensus       104 I~~v~~~D~G~Y~C~~~~~  122 (279)
T 2wbj_D          104 VTSAHPEDSSFYICSARDL  122 (279)
T ss_dssp             ESSCCGGGCEEEEEEEEET
T ss_pred             EccCCccCCEEEEEEEccc
Confidence            9999999999999999994

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=98.90  E-value=7.4e-10  Score=80.60  Aligned_cols=83  Identities=19%  Similarity=0.356  Sum_probs=57.3

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEEeCCEECCCCCeEE----EecCC----EEEEEEccCCCCCC
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWYKGNRELSKRDYSM----SYSDG----VVSMEIIDCKPEDS  124 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~~~~~----~~~~~----~~~l~i~~~~~~d~  124 (168)
                      ..+|.+...+.......|+.+.|.|.+.|. |.+ .+.|++++..+....+..    ...++    ...|.|..+...|.
T Consensus       217 ~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~  296 (323)
T 2wqr_A          217 RAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQK  296 (323)
T ss_dssp             CBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSSEEEEEEEEEEHHHHHHC
T ss_pred             CCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecCcccCCCCcEEEEEEEEEChHHccCC
Confidence            457776554333222239999999999984 433 799999999886432211    11121    23588888888999


Q ss_pred             eEEEEEEEeCCcc
Q psy12421        125 GEYKCVATNKHGT  137 (168)
Q Consensus       125 G~Y~C~a~n~~g~  137 (168)
                      |.|+|.|.|..+.
T Consensus       297 g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          297 DEFICRAVHEAAS  309 (323)
T ss_dssp             CCEEEEEECTTST
T ss_pred             CEEEEEEEeCCCC
Confidence            9999999998765

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=98.89  E-value=6.9e-09  Score=73.61  Aligned_cols=72  Identities=25%  Similarity=0.444  Sum_probs=52.3

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeCC--EE---CC---------------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGN--RE---LS---------------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~--~~---~~---------------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+.  +.+.|+++.  ..   +.               ..++.+..  ......|.|.+
T Consensus       144 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~  223 (264)
T 2gjj_A          144 QSGPEVVKTGASVKISCKASGYSFTGYFINWVKKNSGKSPEWIGHISSSYATSTYNQKFKNKAAFTVDTSSSTAFMQLNS  223 (264)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCEEEcCCCcEEEEEEEeCCccCCeEEEEEEECCCCCcEEEEEEeccCcccccCcccCCceEEEEcCCCCEEEEEECc
Confidence            344457889999999999998764  899999863  11   10               12222221  23455899999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12421        119 CKPEDSGEYKCVATNK  134 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~  134 (168)
                      ++.+|+|.|.|.+.|.
T Consensus       224 v~~~DsG~Y~C~a~n~  239 (264)
T 2gjj_A          224 LTSEDSADYYCVRSGN  239 (264)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             CCcccCEEEEEEEecC
Confidence            9999999999999995

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=98.89  E-value=8.4e-09  Score=70.87  Aligned_cols=86  Identities=23%  Similarity=0.339  Sum_probs=60.2

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C----C-------------CCCeEEEe--cCCEEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L----S-------------KRDYSMSY--SDGVVSMEI  116 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~----~-------------~~~~~~~~--~~~~~~l~i  116 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|++++  ..   +    .             ..++.+..  ..+..+|.|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            35567888999999999998866  7899999853  11   1    0             12333332  234558999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcce-E--EEEEEEEee
Q psy12421        117 IDCKPEDSGEYKCVATNKHGTD-E--TNCVVIVES  148 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g~~-~--~~~~l~v~~  148 (168)
                      .+++.+|+|.|.|.+.|..+.. .  ....|.|..
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  120 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSS  120 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEcc
Confidence            9999999999999999976432 1  234566653

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=98.88  E-value=6.7e-09  Score=73.66  Aligned_cols=73  Identities=22%  Similarity=0.336  Sum_probs=52.9

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCC--CeeEEEeCC--EEC--------------------CCCCeEEEec--CCEEEEE
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGN--REL--------------------SKRDYSMSYS--DGVVSME  115 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~--~~~--------------------~~~~~~~~~~--~~~~~l~  115 (168)
                      ..+....+.+|++++|.|.+.+.+.  +.+.|+++.  ..+                    ...++.+...  .....|.
T Consensus       156 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~  235 (268)
T 1x9q_A          156 DETGGGLVQPGGAMKLSCVTSGFTFGHYWMNWVRQSPEKGLEWVAQFRNKPYNYETYYSDSVKGRFTISRDDSKSSVYLQ  235 (268)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             ECCCceEecCCCcEEEEEEecCccccccEEEEEEeCCCCCcEEEEEEcccccccccccCCccCCeEEEEEeCCCCEEEEE
Confidence            3455678999999999999998763  899999852  111                    1123333221  2345799


Q ss_pred             EccCCCCCCeEEEEEEEeC
Q psy12421        116 IIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~  134 (168)
                      |.+++.+|+|.|.|.+.|.
T Consensus       236 I~~v~~~DsG~Y~C~a~~~  254 (268)
T 1x9q_A          236 MNNLRVEDTGIYYCTGASY  254 (268)
T ss_dssp             ECSCCGGGCEEEEEEEEET
T ss_pred             ECCCCHHHCEEEEEEEccC
Confidence            9999999999999999874

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.88  E-value=7.4e-09  Score=71.10  Aligned_cols=86  Identities=27%  Similarity=0.371  Sum_probs=58.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC-----------------CCCCeEEEe--cCCEEEEEEccC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL-----------------SKRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~-----------------~~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+                 ...++.+..  ..+..+|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            35567888999999999998864  5789999852  111                 012333332  234568999999


Q ss_pred             CCCCCeEEEEEEEeCCcc---eEEEEEEEEee
Q psy12421        120 KPEDSGEYKCVATNKHGT---DETNCVVIVES  148 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~---~~~~~~l~v~~  148 (168)
                      +.+|+|.|.|.+.|..+.   ......|.|..
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~  117 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSS  117 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECS
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecC
Confidence            999999999999986432   11234666663

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.88  E-value=2.5e-10  Score=78.48  Aligned_cols=100  Identities=17%  Similarity=0.256  Sum_probs=61.5

Q ss_pred             eEEecCCcEEEEEEEeccCC-----CeeEEEeCCEEC--------------CCCCeEEEe---cCCEEEEEEccCCCCCC
Q psy12421         67 RVMQVRQTCKLLCCLSGKPP-----PTVKWYKGNREL--------------SKRDYSMSY---SDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~-----p~i~W~~~~~~~--------------~~~~~~~~~---~~~~~~l~i~~~~~~d~  124 (168)
                      ..+.+|+.+.|.|.+.+.|.     +.+.|++++...              ...+..+..   ..+..+|.|.+++..|+
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~D~   84 (222)
T 4i0k_A            5 VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVTDE   84 (222)
T ss_dssp             CCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGGGC
T ss_pred             EEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccccC
Confidence            45678999999999888764     789999976322              011111111   11133699999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      |.|.|.+.|. +.....+.|.|...+..+.....+...+.+|+
T Consensus        85 G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~  126 (222)
T 4i0k_A           85 GSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGN  126 (222)
T ss_dssp             SCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-----CCS
T ss_pred             EEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCCCceecCCc
Confidence            9999999986 34445556666655444333333333455554

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.87  E-value=1.1e-08  Score=72.60  Aligned_cols=86  Identities=20%  Similarity=0.259  Sum_probs=59.6

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------C------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------S------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+      .            ..++.+...  .+..+|.|.+
T Consensus        12 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   91 (261)
T 2xqy_G           12 QPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLSS   91 (261)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             CCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEcC
Confidence            35567788999999999999876  6889999863  111      0            123333321  3455899999


Q ss_pred             CCCCCCeEEEEEEEeCCcce---EEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHGTD---ETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|..+..   .....|.|..
T Consensus        92 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~  124 (261)
T 2xqy_G           92 LTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSS  124 (261)
T ss_dssp             CCGGGCEEEEEEEECTTSSEEEECCCEEEEECS
T ss_pred             CCcccCeEEEEEEecCCCcceEECCCEEEEEcc
Confidence            99999999999999864311   1234666654

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=98.86  E-value=1.3e-08  Score=70.49  Aligned_cols=86  Identities=17%  Similarity=0.256  Sum_probs=59.4

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C---C------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L---S------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~---~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..   +   .            ..++.+...  .+..+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (227)
T 1mju_H            6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (227)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             CCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEECC
Confidence            34456788999999999999876  6899999853  11   1   0            123333321  3456899999


Q ss_pred             CCCCCCeEEEEEEEeCCcce-EEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHGTD-ETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|..+.. .....|.|..
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~  116 (227)
T 1mju_H           86 LTSDDSAVYYCANKLGWFPYWGQGTLVTVSA  116 (227)
T ss_dssp             CCGGGCEEEEEEEEETTEEEECCCEEEEECS
T ss_pred             CCcccCEEEEEEECCCCceEEcCcEEEEEcC
Confidence            99999999999999864321 1234666654

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=98.86  E-value=1.9e-08  Score=62.92  Aligned_cols=85  Identities=16%  Similarity=0.178  Sum_probs=57.9

Q ss_pred             CeEEecCCcEEEEEEEeccC---CCeeEEEeCC--E---EC----------CCCCeEEEecCCEEEEEEccCCCCCCeEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKP---PPTVKWYKGN--R---EL----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      ...+.+|+++.|.|...+.+   .+.+.||+..  .   .+          ...++......+..+|.|.+++.+|+|.|
T Consensus         9 ~~~~~~G~~v~L~C~~~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~DsG~Y   88 (120)
T 1oaq_L            9 ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEAIY   88 (120)
T ss_dssp             EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             cEEEcCCCCEEEEEEeCCCccCCCCEEEEEEeCCCCCCeEEEEEcCccCCCCCCceEEecCCCeEEEEECCCChhhCeEE
Confidence            46788999999999998765   5789999842  1   11          02344444445566899999999999999


Q ss_pred             EEEEEeCCcceE-EEEEEEEeeCC
Q psy12421        128 KCVATNKHGTDE-TNCVVIVESEE  150 (168)
Q Consensus       128 ~C~a~n~~g~~~-~~~~l~v~~~p  150 (168)
                      .|.+.+...... ....|.|...+
T Consensus        89 ~C~~~~~~~~~fg~gt~L~V~~~~  112 (120)
T 1oaq_L           89 FCALWYSNHLVFGGGTKLTVLGQP  112 (120)
T ss_dssp             EEEEEETTEEEECCCEEEEECC--
T ss_pred             EEEEccCCCcEECCCEEEEEcCCC
Confidence            999987643111 12356665543

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.86  E-value=2.8e-09  Score=72.85  Aligned_cols=85  Identities=16%  Similarity=0.302  Sum_probs=55.6

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEecc-CC-CeeEEEeCCEECCCCCe--EEEecCCE----EEEEEccCCCCCC
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PP-PTVKWYKGNRELSKRDY--SMSYSDGV----VSMEIIDCKPEDS  124 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~--~~~~~~~~----~~l~i~~~~~~d~  124 (168)
                      .+..+|.+...+.......|+.+.|.|.+.|. |. +.+.|+++|..+.....  .....++.    ..|.+......|.
T Consensus       105 ~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~  184 (207)
T 2vol_A          105 GRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAG  184 (207)
T ss_dssp             CCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSC
T ss_pred             CCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCC
Confidence            34567887655544333358999999999985 44 38999999998754211  11223331    1355555555689


Q ss_pred             eEEEEEEEeCCcc
Q psy12421        125 GEYKCVATNKHGT  137 (168)
Q Consensus       125 G~Y~C~a~n~~g~  137 (168)
                      |.|+|.|.|....
T Consensus       185 g~ytC~a~n~~l~  197 (207)
T 2vol_A          185 NTFTCSVLHEGLH  197 (207)
T ss_dssp             CEEEEEEECTTSG
T ss_pred             CEEEEEEECCCCC
Confidence            9999999998643

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=98.85  E-value=1.5e-08  Score=63.30  Aligned_cols=77  Identities=25%  Similarity=0.427  Sum_probs=53.3

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCEE----CC--C----CCeEEE-----ecCCEEEEEEccCCCC
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRE----LS--K----RDYSMS-----YSDGVVSMEIIDCKPE  122 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~----~~--~----~~~~~~-----~~~~~~~l~i~~~~~~  122 (168)
                      .+...+....+.+|++++|.|.+.+. +.+.+.||+++..    +.  .    .++...     .......|.|.+++.+
T Consensus         9 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~r~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~   88 (120)
T 2yz1_A            9 KVTQPEKSVSVAAGDSTVLNCTLTSLLPVGPIKWYRGVGQSRLLIYSFTGEHFPRVTNVSDATKRNNMDFSIRISNVTPE   88 (120)
T ss_dssp             CEECCSSEEEECTTCCEEECCEESCCCSCCCEEEEESSSTTCEEEEEECEECTTTCCSEEECCBSSTTBCCEEECSCCGG
T ss_pred             EEECCCceEEEeCCCCEEEEeEECCCCCCcEEEEEcCCCCCcEEEEEcCCcccCcccceeeccccCCCeEEEEECCCCHH
Confidence            34445566788899999999999875 6678999997521    10  0    011101     0122346999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy12421        123 DSGEYKCVATNKH  135 (168)
Q Consensus       123 d~G~Y~C~a~n~~  135 (168)
                      |+|.|.|.+.+..
T Consensus        89 DsG~Y~C~~~~~~  101 (120)
T 2yz1_A           89 DAGTYYCVKFQKG  101 (120)
T ss_dssp             GCEEEEEEEEECC
T ss_pred             HCEEEEEEEEcCC
Confidence            9999999998764

>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI domain, IG-like domain, extracellular receptor, neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4 b.69.12.1 g.16.2.1 PDB: 3ol2_A*

Probab=98.85  E-value=3e-09  Score=84.46  Aligned_cols=99  Identities=18%  Similarity=0.217  Sum_probs=62.0

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc-----e
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT-----D  138 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~-----~  138 (168)
                      ....+..|+.+.|.|.+.+ |.|.+.|++++..+... ...+...++  .|.|.+++..|+|.|.|.|.|..+.     .
T Consensus       541 ~~v~v~~g~~~~L~C~~~s-p~a~v~W~~~~~~l~~~~~~~~~~~~~--~LlI~~v~~~DsG~Y~C~A~e~~~~~~~~~~  617 (663)
T 1olz_A          541 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQV  617 (663)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT--CEEECSCCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred             eEEEEecCCcEEEEccCCC-CCCcEEEEECCeeccccCcceEEecCC--eEEEEecCcccCeEEEEEEEECccCCCceEE
Confidence            3467888999999999988 99999999999876432 112222234  6899999999999999999998422     3


Q ss_pred             EEEEEEEEeeCCCchhhhhhhhhcccCCC
Q psy12421        139 ETNCVVIVESEEESKEQQELAHNFLYSGE  167 (168)
Q Consensus       139 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~  167 (168)
                      .....|.|..+|.....+... ..+.+|+
T Consensus       618 ~~~~~l~V~v~P~~~~~p~~~-~~~~~g~  645 (663)
T 1olz_A          618 VAKHVLEVKVVPKPVVAPTLS-VVQTEGS  645 (663)
T ss_dssp             EEEEEEEEEC-------------------
T ss_pred             EEEEEEEEEeCCccCCCCCCh-hhhhcCC
Confidence            456677887766544332222 3445554

>3bik_B Programmed cell death protein 1; CO-stimulation, receptor-ligand complex, immunoglobulin-like sandwich, T cell, B cell, programmed death; 2.65A {Mus musculus} SCOP: b.1.1.1

Probab=98.84  E-value=1.2e-07  Score=60.49  Aligned_cols=91  Identities=20%  Similarity=0.311  Sum_probs=62.5

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC-CCeeEEEeCC--E--E-C-----------CCCCeEEEe--cCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGN--R--E-L-----------SKRDYSMSY--SDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~--~--~-~-----------~~~~~~~~~--~~~~~~l~i~~~~  120 (168)
                      +...+....+.+|++++|.|...... ...+.||+..  .  . +           ...++....  ......|.|.+++
T Consensus        12 v~Q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~Rf~~~~~~~~~~~~L~I~~~~   91 (134)
T 3bik_B           12 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   91 (134)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEECSCC
T ss_pred             EEECCCeEEEeCCCCEEEEEEeCCCCCCcEEEEEEcCCCCCceEEEEEcCCCCCcccCCCEEEEecCCCCEEEEEECCCC
Confidence            34456667899999999999987654 5789999852  1  1 1           123444432  3446689999999


Q ss_pred             CCCCeEEEEEEEeCCcce----EEEEEEEEeeCC
Q psy12421        121 PEDSGEYKCVATNKHGTD----ETNCVVIVESEE  150 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g~~----~~~~~l~v~~~p  150 (168)
                      .+|+|.|.|.+.+..+..    .....|.|.+.+
T Consensus        92 ~~Dsg~Y~C~~~~~~~~~~~~~~~gt~L~V~~~~  125 (134)
T 3bik_B           92 RNDSGIYLCGAISLHPKAKIEESPGAELVVTERI  125 (134)
T ss_dssp             GGGCEEEEEEEEECSSSCEEEECCCEEEEEECCC
T ss_pred             hHHCEEEEEEEEeCCCCceEEEcCCEEEEEeCCC
Confidence            999999999998764321    224567776544

>2nms_A CMRF35-like-molecule 1; IG-superfamily, IG-V, NKP44-like, myeloid IG-like receptor, inhibitory receptor, myelo-monocytic cells; 2.60A {Homo sapiens}

Probab=98.84  E-value=9.3e-08  Score=60.24  Aligned_cols=91  Identities=13%  Similarity=0.153  Sum_probs=60.7

Q ss_pred             cCCeEEecCCcEEEEEEEeccC-CCeeEEEeCCE-----EC-C---------CCCeEEEe--cCCEEEEEEccCCCCCCe
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGNR-----EL-S---------KRDYSMSY--SDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~-----~~-~---------~~~~~~~~--~~~~~~l~i~~~~~~d~G  125 (168)
                      +....+.+|++++|.|...+.. ...+.|++...     .+ .         ..++.+..  ..+..+|.|.+++.+|+|
T Consensus         9 p~~v~~~~G~svtL~C~~s~~~~~~~~~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~Dsg   88 (124)
T 2nms_A            9 PTTVNGLERGSLTVQCVYRSGWETYLKWWCRGAIWRDCKILVKTSGSEQEVKRDRVSIKDNQKNRTFTVTMEDLMKTDAD   88 (124)
T ss_dssp             CSEEEEETTCCEEEEEEECTTCTTSEEEEEESSSSTTCEEEEECCSSSCCEEETTEEEEEETTTTEEEEEECSCCGGGCE
T ss_pred             ccEEEEeCCCCEEEEeEEeCCcccccEEEEeCCCCCCceEEEEcCCcccceeCCCEEEEEcCcCCEEEEEEeCCCHHHCE
Confidence            4456788999999999987643 33689998642     11 0         12233321  245668999999999999


Q ss_pred             EEEEEEEeCCcceEEEEEEEEeeCCCchh
Q psy12421        126 EYKCVATNKHGTDETNCVVIVESEEESKE  154 (168)
Q Consensus       126 ~Y~C~a~n~~g~~~~~~~l~v~~~p~~~~  154 (168)
                      .|.|.+..........+.|.|...|..+.
T Consensus        89 ~Y~C~~~~~~~~~~~~v~L~V~~~~~~~~  117 (124)
T 2nms_A           89 TYWCGIEKTGNDLGVTVQVTIDPAPVTQE  117 (124)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCC----
T ss_pred             EEEEEEEcCCCCccEEEEEEEeCCCcCCC
Confidence            99999987754455567788877655543

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=98.83  E-value=3.5e-08  Score=62.61  Aligned_cols=79  Identities=16%  Similarity=0.342  Sum_probs=58.0

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEE------C----C-------------CCCeEE-EecC
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NRE------L----S-------------KRDYSM-SYSD  109 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~------~----~-------------~~~~~~-~~~~  109 (168)
                      .++.+...+....+.+|++++|.|...+.....+.||+.  +..      +    .             ..++.. ....
T Consensus         3 ~~~~v~Q~p~~~~v~~G~~vtL~C~~s~~~~~~v~WyrQ~~g~~l~~p~~l~~~~~~~~~~~~~~~~~~~~rfs~~~~~~   82 (128)
T 1nez_G            3 QAPELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN   82 (128)
T ss_dssp             -CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT
T ss_pred             cCCeeEECCCeEEEcCCCCEEEEEEeCccCCCcEEEEEeCCCCCCCCcEEEEEEecccCCceeeccccCCCcEEEEeCCC
Confidence            356777788889999999999999998766678999973  211      1    0             123333 3344


Q ss_pred             CEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421        110 GVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       110 ~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ....|.|.+++.+|+|.|.|.+...
T Consensus        83 ~~~~L~I~~~~~~Dsg~YyCa~~~~  107 (128)
T 1nez_G           83 NKYVLTLNKFSKENEGYYFCSVISN  107 (128)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             CEEEEEECCCCHHHCEEEEEEEcCC
Confidence            5567999999999999999988753

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=98.83  E-value=5.5e-10  Score=78.07  Aligned_cols=122  Identities=10%  Similarity=0.163  Sum_probs=71.8

Q ss_pred             CceeEEEEeCCCCCCCCCCcccce------eccCcceeeEeee-cccCCCeEEe-ecCCeEEecCCcEEEEEEEeccCCC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQV------RRREPLQITFWQE-TVESAPNFTF-LLRPRVMQVRQTCKLLCCLSGKPPP   87 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~~-~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p   87 (168)
                      .|.+.+++..|.+.  |.|.....      .......+.+... ....+|.+.. .+....+..|+.+.|.|.+.|.|++
T Consensus        78 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~  155 (246)
T 4dzb_B           78 TLTVTSAHPEDSSF--YICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  155 (246)
T ss_dssp             EEEECSCCGGGCEE--EEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS
T ss_pred             EEEECCCCHHHCEE--EEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCC
Confidence            36677778888666  43332211      1111222222210 1224566543 3333445569999999999997765


Q ss_pred             --eeEEEeCCEECCCCCeEEEe--------cCCE----EEEEEccCCCCC-CeEEEEEEEeCCcceE
Q psy12421         88 --TVKWYKGNRELSKRDYSMSY--------SDGV----VSMEIIDCKPED-SGEYKCVATNKHGTDE  139 (168)
Q Consensus        88 --~i~W~~~~~~~~~~~~~~~~--------~~~~----~~l~i~~~~~~d-~G~Y~C~a~n~~g~~~  139 (168)
                        .+.|++++..+.........        .++.    ..|.|......| .|.|+|.|.|......
T Consensus       156 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          156 HVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             CEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             ceEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence              89999999887542211000        1221    237788777777 9999999999865543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=98.83  E-value=1.2e-08  Score=73.02  Aligned_cols=74  Identities=16%  Similarity=0.300  Sum_probs=53.9

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc--CCCeeEEEeCCE--ECC------------------CCCeEEE--ecCCEEEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGNR--ELS------------------KRDYSMS--YSDGVVSME  115 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~~--~~~------------------~~~~~~~--~~~~~~~l~  115 (168)
                      +.. +....+.+|++++|.|.+.+.  +.+.+.|++...  .+.                  ..++.+.  ...+..+|.
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   82 (280)
T 3fku_X            4 LVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYMD   82 (280)
T ss_dssp             EEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEEE
T ss_pred             EEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEEE
Confidence            444 667888999999999999875  568899997421  100                  1233333  233456799


Q ss_pred             EccCCCCCCeEEEEEEEeC
Q psy12421        116 IIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~n~  134 (168)
                      |.+++.+|+|.|.|.+.|.
T Consensus        83 I~~v~~~DsG~Y~C~~~~~  101 (280)
T 3fku_X           83 LRSLRSEDTAVYYCARSPS  101 (280)
T ss_dssp             ECSCCSTTCEECCEEECSS
T ss_pred             ECCCChhhCEEEEEEEecC
Confidence            9999999999999999986

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens}

Probab=98.82  E-value=3.2e-09  Score=66.70  Aligned_cols=86  Identities=14%  Similarity=0.129  Sum_probs=59.3

Q ss_pred             CeEEecCCcEEEEEEE-eccCCCeeEEEeCCE-EC----------C----CCCeEEEecCCEEEEEEccCCCCCCeEEEE
Q psy12421         66 PRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNR-EL----------S----KRDYSMSYSDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~-~~----------~----~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      ...+.+|++++|.|.. .......+.|+++.. .+          .    ..+..+...++  +|.|.+++.+|+|.|.|
T Consensus        13 pv~~~~G~~VtL~c~~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~~~~f~~R~~l~~~~~--sL~I~nv~~~DsG~Y~c   90 (121)
T 2edo_A           13 HMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRVRLDPQSG--ALYISKVQKEDNSTYIM   90 (121)
T ss_dssp             CCEEETTSCEEECCSSCCCSSEEEEEEEEETTEEEEEECSSCEEECSCTTTTTCEECTTTC--CEEESSCCGGGCSEEEE
T ss_pred             EEEEEeCCCEEEeCCCCCCCceeEEEEEcCCCCeEEEEECcCCeEeChhcCCcEEEeCCCc--eEEEeCCCHHHCeEEEE
Confidence            3577899999999986 334456799998652 11          0    01222221333  79999999999999999


Q ss_pred             EEEeCCc-ceEEEEEEEEeeCCCch
Q psy12421        130 VATNKHG-TDETNCVVIVESEEESK  153 (168)
Q Consensus       130 ~a~n~~g-~~~~~~~l~v~~~p~~~  153 (168)
                      .+.+..+ .....+.|.|..++..|
T Consensus        91 ~v~~~~~~~~~~~~~L~V~~~~~~P  115 (121)
T 2edo_A           91 RVLKKTGNEQEWKIKLQVLDPVPKP  115 (121)
T ss_dssp             EEEETTTEEEECCEECEEECCSCCC
T ss_pred             EEEcCCCcEEEEEEEEEEECCCCCC
Confidence            9998754 34567788887765544

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.82  E-value=2.1e-09  Score=81.43  Aligned_cols=124  Identities=13%  Similarity=0.142  Sum_probs=73.5

Q ss_pred             CceeEEEEeCCCCCCCCCCccccee-----ccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-e
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVR-----RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-T   88 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~   88 (168)
                      .|.+.+++..|.+.  |.|......     ......+.+.. ....+|.+........+..|+.+.|.|.+.|. |.| .
T Consensus        80 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~l~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  156 (444)
T 1igt_B           80 YLQMSRLKSEDTAM--YYCARHGGYYAMDYWGQGTTVTVSS-AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT  156 (444)
T ss_dssp             EEEECSCCGGGCEE--EEEEEECSSSCEEEEBCCEEEEECS-CCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCE
T ss_pred             EEEECCCCHHHCEE--EEEEEecCCcccccccCcEEEEecC-CCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcE
Confidence            46677788888666  433322110     01112222211 12235655543333334789999999999985 776 9


Q ss_pred             eEEEeCCEECCCCC-eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         89 VKWYKGNRELSKRD-YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        89 i~W~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      +.|++++..+.... .... ..+    ...|.|.++...| |.|+|.|.|..|.......+
T Consensus       157 v~W~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~~~~~i  215 (444)
T 1igt_B          157 LTWNSGSLSSGVHTFPAVL-QSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI  215 (444)
T ss_dssp             EEEGGGTBCTTEEECCCEE-ETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEEEEEEC
T ss_pred             EEEecCCCCCCeEecCccc-cCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcceEEEe
Confidence            99999886532100 0000 011    1258899999889 99999999999886554444

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.82  E-value=1.1e-08  Score=68.66  Aligned_cols=83  Identities=13%  Similarity=0.197  Sum_probs=58.9

Q ss_pred             CeEEecCCcEEEEEEEec-cCCCeeEEEeC-CEEC------------CC---CCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSG-KPPPTVKWYKG-NREL------------SK---RDYSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~-~~~~------------~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      ...+.+|+++.|.|.+.+ .+.+.+.|++. +..+            ..   .+..+...++  +|.|.+++..|+|.|.
T Consensus         8 ~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~--sL~I~~v~~~D~G~Y~   85 (180)
T 2dru_A            8 NVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG--ALRIYNVSKEDRGDYY   85 (180)
T ss_dssp             EEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTC--CEEECSCCGGGCEEEE
T ss_pred             eEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCc--cEEEcCCCHHHCeEEE
Confidence            457889999999998754 34789999994 2211            01   2222212333  7999999999999999


Q ss_pred             EEEEeCCcceEEEEEEEEeeCCC
Q psy12421        129 CVATNKHGTDETNCVVIVESEEE  151 (168)
Q Consensus       129 C~a~n~~g~~~~~~~l~v~~~p~  151 (168)
                      |.+.+.. .....+.|.|..++.
T Consensus        86 C~v~~~~-~~~~~~~L~V~~~~~  107 (180)
T 2dru_A           86 MRMLHET-EDQWKITMEVYEMVS  107 (180)
T ss_dssp             EEEESSS-EEEEEEEEEEECCCC
T ss_pred             EEEEcCC-eEEEEEEEEEECCCC
Confidence            9998776 556677888876543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.81  E-value=2.4e-08  Score=69.47  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=53.6

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--------------EEC----CCCCeEEEe-cCCEEEEEEccC
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--------------REL----SKRDYSMSY-SDGVVSMEIIDC  119 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--------------~~~----~~~~~~~~~-~~~~~~l~i~~~  119 (168)
                      .+...+....+.+|+++.|.|.+.+ +.+.+.|++..              ...    ...++.+.. ..+..+|.|.++
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v   82 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSAL   82 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECcC
Confidence            3445566778999999999999876 88899999821              111    012333332 234557999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      +.+|+|.|.|.+.+
T Consensus        83 ~~~D~G~Y~C~~~~   96 (240)
T 3q5y_A           83 ELEDSAMYFCASSL   96 (240)
T ss_dssp             CGGGCEEEEEEEES
T ss_pred             ChhHCEEEEEEEcc
Confidence            99999999999983

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=98.81  E-value=2.2e-08  Score=70.89  Aligned_cols=74  Identities=15%  Similarity=0.312  Sum_probs=54.5

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C---------------CCCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L---------------SKRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~---------------~~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..   +               ...++.+...  .+..+|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (257)
T 3bn9_D            6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS   85 (257)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence            34567788999999999998865  6889999853  11   0               0123333322  3456899999


Q ss_pred             CCCCCCeEEEEEEEeCCc
Q psy12421        119 CKPEDSGEYKCVATNKHG  136 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g  136 (168)
                      ++.+|+|.|.|.+.|..|
T Consensus        86 v~~~DsG~Y~C~~~~~~g  103 (257)
T 3bn9_D           86 LRAEDTAVYYCARPYLTY  103 (257)
T ss_dssp             CCGGGCEEEEEEEECCSS
T ss_pred             CChhhCEEEEEEEecCCC
Confidence            999999999999999765

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.81  E-value=2.6e-08  Score=70.48  Aligned_cols=90  Identities=13%  Similarity=0.185  Sum_probs=60.5

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC------------C-----CCCeEEEe-cCCEEEEEEc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL------------S-----KRDYSMSY-SDGVVSMEII  117 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~------------~-----~~~~~~~~-~~~~~~l~i~  117 (168)
                      +.+...+....+.+|+++.|.|.+. .+.+.+.|++.  +..+            .     ..++.+.. ..+..+|.|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~  105 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLKIQ  105 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEEC
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEEEC
Confidence            4455556667899999999999976 57889999982  2111            0     03333332 1234579999


Q ss_pred             cCCCCCCeEEEEEEEeC--CcceEEEEEEEEee
Q psy12421        118 DCKPEDSGEYKCVATNK--HGTDETNCVVIVES  148 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~v~~  148 (168)
                      +++.+|+|.|.|.+.|.  .+.......|.|..
T Consensus       106 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~  138 (268)
T 3pl6_D          106 RTERGDSAVYLCATSALGDTQYFGPGTRLTVLE  138 (268)
T ss_dssp             SCCGGGCEEEEEEEESSSSSCEECCCEEEEEES
T ss_pred             CCCcccCEEEEEEEecCCCceeeCCcEEEEEec
Confidence            99999999999999984  22233344556654

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.81  E-value=3.9e-08  Score=75.19  Aligned_cols=84  Identities=17%  Similarity=0.362  Sum_probs=58.2

Q ss_pred             ccCCCeEEeecCC-eEEecCCcEEEEEEEeccCC--CeeEEEeCCEECCCCCeE----EEe---cCC----EEEEEEccC
Q psy12421         54 VESAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRDYS----MSY---SDG----VVSMEIIDC  119 (168)
Q Consensus        54 ~~~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~----~~~---~~~----~~~l~i~~~  119 (168)
                      +..+|.+...+.. ..+..|+.+.|.|.+.|.++  +.+.|+++|..+....+.    ...   .++    ...|.|...
T Consensus       346 ~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~  425 (475)
T 1iga_A          346 NTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAE  425 (475)
T ss_pred             CCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeecccccccCCCCCcEEEEEEEEEChH
Confidence            3567877655443 34678999999999998643  599999999988654211    111   122    124677777


Q ss_pred             CCCCCeEEEEEEEeCCcc
Q psy12421        120 KPEDSGEYKCVATNKHGT  137 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~  137 (168)
                      ...|.|.|+|.|.|....
T Consensus       426 ~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          426 DWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             HhcCCCEEEEEEEcCCCC
Confidence            778899999999998644

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus}

Probab=98.81  E-value=1.5e-08  Score=62.83  Aligned_cols=86  Identities=23%  Similarity=0.316  Sum_probs=56.9

Q ss_pred             cCCeEEecCCcEEEEEEEecc--CCCeeEEEeCC-------EEC---C--------CCCeEEE--ecCCEEEEEEccCCC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGN-------REL---S--------KRDYSMS--YSDGVVSMEIIDCKP  121 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~-------~~~---~--------~~~~~~~--~~~~~~~l~i~~~~~  121 (168)
                      +....+.+|++++|.|.....  ....+.|++..       ..+   .        ..++.+.  ...+..+|.|.+++.
T Consensus         4 p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~i~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~   83 (115)
T 2or7_A            4 HTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNSRYQLKGNISEGNVSLTIENTVV   83 (115)
T ss_dssp             --CEEEETTSCEEECCBCCHHHHCSCCEEEEESCHHHHTTTTEEEEECSSSEEEESSTTEECCSCGGGTBCCEEESSCCG
T ss_pred             ccEEEEEcCCCEEEEEEeecCCCCCEEEEEECCCCCcCCCceEEEEeCCeEcccccCccEEEecCccCCeEEEEEccCCH
Confidence            445678899999999998653  35679999974       111   0        1122211  112334799999999


Q ss_pred             CCCeEEEEEEEeCCcceEEEEEEEEeeC
Q psy12421        122 EDSGEYKCVATNKHGTDETNCVVIVESE  149 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~g~~~~~~~l~v~~~  149 (168)
                      +|+|.|.|.+.+........+.|.|...
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (115)
T 2or7_A           84 GDGGPYCCVVEIPGAFHFVDYMLEVKPE  111 (115)
T ss_dssp             GGCEEEEEEECCTTSCEEEEEEEEEESC
T ss_pred             HHCEEEEEEEECCCceeEEEEEEEEcCC
Confidence            9999999999876544566666766543

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=98.80  E-value=3.7e-09  Score=73.12  Aligned_cols=82  Identities=20%  Similarity=0.258  Sum_probs=53.8

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEecc-CCC-eeEEEeCCEECCCC-CeEEEecCC----EEEEEEccCCCCCCeEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-TVKWYKGNRELSKR-DYSMSYSDG----VVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~i~W~~~~~~~~~~-~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C  129 (168)
                      +|.+........+..|+.+.|.|.+.|. |.| .+.|++++..+... .......++    ...|.|......| |.|+|
T Consensus       128 ~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C  206 (225)
T 1op3_H          128 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYIC  206 (225)
T ss_dssp             CCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCE
T ss_pred             CCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEE
Confidence            4655433222234679999999999986 776 99999988653210 001111222    2258888888888 99999


Q ss_pred             EEEeCCcceE
Q psy12421        130 VATNKHGTDE  139 (168)
Q Consensus       130 ~a~n~~g~~~  139 (168)
                      .|.|..+...
T Consensus       207 ~a~n~~~~~~  216 (225)
T 1op3_H          207 NVNHKPSNTK  216 (225)
T ss_dssp             EEEEGGGTEE
T ss_pred             EEEcCCCCcc
Confidence            9999766544

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=98.80  E-value=2.7e-08  Score=75.67  Aligned_cols=74  Identities=15%  Similarity=0.279  Sum_probs=54.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEE---C---------------CCCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRE---L---------------SKRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~---~---------------~~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++  +..   +               ...++.+...  .+...|.|.+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence            44557788999999999998876  788999984  211   1               0123333322  3456899999


Q ss_pred             CCCCCCeEEEEEEEeCCc
Q psy12421        119 CKPEDSGEYKCVATNKHG  136 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g  136 (168)
                      ++.+|+|.|.|.+.|..|
T Consensus        86 v~~~D~G~Y~C~~~~~~~  103 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYS  103 (457)
T ss_dssp             CCGGGCEEEEEEECCCCC
T ss_pred             CCcccCEEEEEEEecCCc
Confidence            999999999999999865

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=98.80  E-value=3e-08  Score=60.75  Aligned_cols=91  Identities=13%  Similarity=0.175  Sum_probs=59.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECC---CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~---~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .+|.+...+.. .+..|+.++|.|.... ....+.|+|++....   ..............|.|..++..|+|.|.|...
T Consensus         8 pkPsL~a~P~~-vv~~G~~VtL~C~~~~-~~~~f~l~k~g~~~~~~~~~~~~~~~~~~~~~f~i~~vt~~~aG~Y~C~~~   85 (106)
T 3kgr_A            8 PRPSISAEPGT-VIPLGSHVTFVCRGPV-GVQTFRLERESRSTYNDTEDVSQASPSESEARFRIDSVSEGNAGPYRCIYY   85 (106)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEEECT-TCCEEEEEEGGGTEEEEECCCEEEETTEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCEEEEeCCC-ccCCCCeEEEEEEccC-CCcEEEEEECCCccccccccccccCCCCcceEEEecCCCcCCCceEEEEee
Confidence            45777666654 7889999999999754 345789999885431   111111111123469999999999999999988


Q ss_pred             eCCcce--EEEEEEEEee
Q psy12421        133 NKHGTD--ETNCVVIVES  148 (168)
Q Consensus       133 n~~g~~--~~~~~l~v~~  148 (168)
                      +..+..  +..+.|.|.+
T Consensus        86 ~~~~~S~~Sdpl~L~Vtg  103 (106)
T 3kgr_A           86 KPPKWSEQSDYLELLVKE  103 (106)
T ss_dssp             ETTEECCCCCCEEEEEEC
T ss_pred             CCCcccCCCCCEEEEEeC
Confidence            864332  3344555543

>2otu_A FV light chain variable domain; antibody FV polyglutamine complex, immune system; 1.68A {Mus musculus} PDB: 2otw_A 2gsg_A

Probab=98.79  E-value=8.4e-08  Score=59.48  Aligned_cols=72  Identities=24%  Similarity=0.412  Sum_probs=53.3

Q ss_pred             cCCeEEecCCcEEEEEEEecc-CCCeeEEEeCC--E---EC----C----------CCCeEEEecCCEEEEEEccCCCCC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGN--R---EL----S----------KRDYSMSYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~--~---~~----~----------~~~~~~~~~~~~~~l~i~~~~~~d  123 (168)
                      +....+.+|++++|.|...+. +...+.|++..  .   .+    .          ..++......+..+|.|.+++.+|
T Consensus         8 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~~D   87 (115)
T 2otu_A            8 SSSASFSLGASAKLTCTLSSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSSSGADRYLSISNIQPED   87 (115)
T ss_dssp             CCCEECCTTCCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECTTCCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             CCCEEECCCCCEEEEEEecCCCCCeEEEEEEeCCCCCceEEEEEecCCceecCcccCCCEEEEccCCEEEEEECCCChhH
Confidence            566788899999999998875 67789999842  1   11    0          123443334455689999999999


Q ss_pred             CeEEEEEEEeCC
Q psy12421        124 SGEYKCVATNKH  135 (168)
Q Consensus       124 ~G~Y~C~a~n~~  135 (168)
                      +|.|.|.+.+..
T Consensus        88 sg~Y~C~~~~~~   99 (115)
T 2otu_A           88 EAIYICGVGDTI   99 (115)
T ss_dssp             CEEEEEEEEECC
T ss_pred             CEEEEEEEecCC
Confidence            999999998754

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=98.79  E-value=4.9e-08  Score=74.65  Aligned_cols=87  Identities=20%  Similarity=0.279  Sum_probs=60.2

Q ss_pred             eecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------------------CCCCeEEEec--CCEEEEEEc
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------------------SKRDYSMSYS--DGVVSMEII  117 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~~~--~~~~~l~i~  117 (168)
                      ..+....+.+|+++.|.|.+.+.+  .+.+.||++.  ..+                  ...++.+...  .+..+|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   85 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLS   85 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEEC
Confidence            355667888999999999998764  6789999853  111                  0122333221  234579999


Q ss_pred             cCCCCCCeEEEEEEEeCCcc------eEEEEEEEEee
Q psy12421        118 DCKPEDSGEYKCVATNKHGT------DETNCVVIVES  148 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~~g~------~~~~~~l~v~~  148 (168)
                      +++.+|+|.|.|.+.|..|.      ......|.|..
T Consensus        86 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~  122 (475)
T 1iga_A           86 SLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSS  122 (475)
T ss_pred             CCChhhCEEEEEEEeccCCCccceeeecCceEEEecc
Confidence            99999999999999998762      12344666653

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=98.79  E-value=5.6e-08  Score=67.67  Aligned_cols=74  Identities=19%  Similarity=0.309  Sum_probs=54.1

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EE---C-------------CCCCeEEEe-cCCEEEEEEccCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RE---L-------------SKRDYSMSY-SDGVVSMEIIDCKP  121 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~---~-------------~~~~~~~~~-~~~~~~l~i~~~~~  121 (168)
                      ...+....+.+|+++.|.|.+. .+.+.+.|+++.  ..   +             ...++.+.. ..+..+|.|.+++.
T Consensus         3 ~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~~   81 (238)
T 1bec_A            3 TQSPRNKVAVTGGKVTLSCQQT-NNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELATP   81 (238)
T ss_dssp             EEECSEEEEETTCCEEEEEEES-SCCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCCG
T ss_pred             ccCCCeeEEeCCCcEEEEEEeC-CCCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCCc
Confidence            3456667889999999999985 468899999853  10   0             012333322 23456899999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy12421        122 EDSGEYKCVATNKH  135 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~  135 (168)
                      +|+|.|.|.+.|..
T Consensus        82 ~D~G~Y~C~~~~~~   95 (238)
T 1bec_A           82 SQTSVYFCASGGGR   95 (238)
T ss_dssp             GGCEEEEEEEESCT
T ss_pred             ccCEEEEEEEecCC
Confidence            99999999999874

>2qhl_A Novel immune-type receptor 10; immunoglobulin variable domain-like beta-sandwich, immune system; 1.56A {Ictalurus punctatus} PDB: 3b5t_A 2qjd_A 2qte_A 2qqq_A

Probab=98.79  E-value=7.4e-09  Score=63.95  Aligned_cols=71  Identities=23%  Similarity=0.513  Sum_probs=52.4

Q ss_pred             cCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCC--E---ECC----------------CCCeEEEecCCEEEEEEccCCC
Q psy12421         64 LRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGN--R---ELS----------------KRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~--~---~~~----------------~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      +....+.+|++++|.|.+. +.+.+.+.|++..  .   .+.                ..++......+..+|.|.+++.
T Consensus         6 p~~~~~~~G~~v~L~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~L~I~~~~~   85 (111)
T 2qhl_A            6 LHVKTVKRGENVTMECSMSKVKDKDKLAWYRQSFGKVPQYFVRYYSSNSGYKFAEGFKDSRFSMTVNDQKFDLNIIGTRE   85 (111)
T ss_dssp             CEEEECCTTCCEEECCBCTTCSCGGGEEEEEECTTBCCEEEEEECSSSSCEEECTTCCCTTEEEEESSSBEEEEESSCCG
T ss_pred             CceEEEeCCCCEEEEEEccCCcccceEEEEEecCCCCCEEEEEEeccCCccccccCCCCCcEEEEEcCCeEEEEECCCCh
Confidence            3346677899999999987 7777889999842  1   110                2334444344556899999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12421        122 EDSGEYKCVATNK  134 (168)
Q Consensus       122 ~d~G~Y~C~a~n~  134 (168)
                      +|+|.|.|.+.+.
T Consensus        86 ~DsG~Y~C~~~~~   98 (111)
T 2qhl_A           86 DDGGEYFCGEVEG   98 (111)
T ss_dssp             GGCEEEEEEEEET
T ss_pred             hHCEEEEEEEccC
Confidence            9999999999875

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=98.79  E-value=1.4e-09  Score=75.03  Aligned_cols=85  Identities=20%  Similarity=0.338  Sum_probs=54.6

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-eeEEEeCCEECCCCC--eEEEecCCE----EEEEEccCCCCCC
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKRD--YSMSYSDGV----VSMEIIDCKPEDS  124 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d~  124 (168)
                      .+..+|.+...+.......|+.+.|.|.+.| .|.+ .+.|++++..+....  ......++.    ..|.+......|.
T Consensus       113 ~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~d~  192 (218)
T 2rgs_A          113 GLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWTSNGHTEENYKDTAPVLDSDGSYFIYSKLNMKTSKWEKT  192 (218)
T ss_dssp             CCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHHC
T ss_pred             CCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEEECCEeccCceecccEECCCCCEEEEEEEEECHHHcCCC
Confidence            4456787765544432235899999999998 5665 899999998764311  011122331    1244444444568


Q ss_pred             eEEEEEEEeCCcc
Q psy12421        125 GEYKCVATNKHGT  137 (168)
Q Consensus       125 G~Y~C~a~n~~g~  137 (168)
                      |.|+|.|.|....
T Consensus       193 g~YtC~a~n~~l~  205 (218)
T 2rgs_A          193 DSFSCNVRHEGLK  205 (218)
T ss_dssp             SCEEEEEECTTSG
T ss_pred             CeEEEEEEcCCCC
Confidence            9999999998654

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=98.78  E-value=4.3e-08  Score=61.73  Aligned_cols=77  Identities=23%  Similarity=0.340  Sum_probs=55.7

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C----------CCCCeEEEecCCEEEEEEccCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L----------SKRDYSMSYSDGVVSMEIIDCK  120 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~----------~~~~~~~~~~~~~~~l~i~~~~  120 (168)
                      |.+.. +....+.+|++++|.|...+.+  ...+.||+..  ..   +          ...++..........|.|.+++
T Consensus         2 p~v~Q-p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~~~~~~~~~Rfs~~~~~~~~sL~I~~l~   80 (123)
T 3t0v_A            2 PVLTQ-SPSVSGTPGQKVTIFCSGSSSNVEDNSVYWYQQFPGTTPKVLIYNDDRRSSGVPDRFSGSKSGTSASLAISGLR   80 (123)
T ss_dssp             CSBEE-CCCEEECTTCCEEEEEECCTTTTTTSCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCC
T ss_pred             CccCc-cCeEEEcCCCCEEEEEecCCCccCCCeEEEEEECCCCCCEEEEEECCcCCCCCcCCEEEEccCCEEEEEECCCC
Confidence            34444 5578899999999999987754  4689999842  11   1          0134444434556789999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy12421        121 PEDSGEYKCVATNKH  135 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~  135 (168)
                      .+|+|.|.|.+.+..
T Consensus        81 ~~DsG~Y~C~~~~~~   95 (123)
T 3t0v_A           81 SEDEADYYCLSWDDS   95 (123)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             HHHCEEEEEEEEcCC
Confidence            999999999998764

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=98.78  E-value=7.4e-08  Score=60.47  Aligned_cols=74  Identities=19%  Similarity=0.333  Sum_probs=53.4

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE----CC-CCCeEEE--ecCCEEEEEEccCCCCCCeEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE----LS-KRDYSMS--YSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~----~~-~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +...+....+.+|++++|.|.+.+..  .+.+.||+..  ..    +. ..++...  ...+...|.|.+++.+|+|.|.
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~DsG~Y~   82 (121)
T 2i24_N            3 VDQTPQRITKETGESLTINCVVRDSRCVLSTGYWYRKPPGSRNEESISDGGRYVETVNRGSKSFSLRINDLTVKDSGTYR   82 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECSCCCCEEEEEEEEECTTCSCCEEECSBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             cEECCcEEEEecCCcEEEEeEccCCCCCCCEEEEEEeCCCCCceeeEecCCCeEEEecCCCCEEEEEECCCChhhCEEEE
Confidence            34456677889999999999997653  5679999853  11    11 2334332  2345668999999999999999


Q ss_pred             EEEEe
Q psy12421        129 CVATN  133 (168)
Q Consensus       129 C~a~n  133 (168)
                      |.+..
T Consensus        83 C~~~~   87 (121)
T 2i24_N           83 CKPES   87 (121)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            99875

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=98.78  E-value=5.6e-09  Score=72.68  Aligned_cols=120  Identities=10%  Similarity=0.161  Sum_probs=71.4

Q ss_pred             CceeEEEEeCCCCCCCCCCccc-----ceeccCcceeeEeee-cccCCCeEEe-ecCCeEEecCCcEEEEEEEec-cCCC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQ-----QVRRREPLQITFWQE-TVESAPNFTF-LLRPRVMQVRQTCKLLCCLSG-KPPP   87 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~p   87 (168)
                      .|.+.+++..|.|.  |.|...     .........+.+... ....+|.+.. .+....+..|+.+.|.|.+.| .|.+
T Consensus        76 sL~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  153 (240)
T 3q5y_A           76 EMNMSALELEDSAM--YFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDH  153 (240)
T ss_dssp             EEEECSCCGGGCEE--EEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEEECcCChhHCEE--EEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCC
Confidence            36677788888666  433322     011112222222210 1235566553 333334556899999999998 5656


Q ss_pred             -eeEEEeCCEECCCCCeE----EEecCCE----EEEEEccCCCCC-CeEEEEEEEeCCcc
Q psy12421         88 -TVKWYKGNRELSKRDYS----MSYSDGV----VSMEIIDCKPED-SGEYKCVATNKHGT  137 (168)
Q Consensus        88 -~i~W~~~~~~~~~~~~~----~~~~~~~----~~l~i~~~~~~d-~G~Y~C~a~n~~g~  137 (168)
                       .+.|+++|..+......    ....++.    ..|.|......| .|.|+|.|.|....
T Consensus       154 ~~v~W~~~g~~l~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~~  213 (240)
T 3q5y_A          154 VELSWWVNGKEVHSGVSTDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGLS  213 (240)
T ss_dssp             EEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             eEEEEEECCEECcCcEecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence             78999999987542211    1222332    237888888888 77999999987654

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=98.77  E-value=9.2e-09  Score=70.61  Aligned_cols=123  Identities=15%  Similarity=0.168  Sum_probs=67.1

Q ss_pred             CceeEEEEeCCCCCCCCCCccccee-----ccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-e
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQVR-----RREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-T   88 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~   88 (168)
                      .|.+.+++..|.+.  |.|......     ......+.+.. ....+|.+........+..|+.+.|.|.+.|. |.| .
T Consensus        79 ~L~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~L~V~~-~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~  155 (215)
T 1c5d_H           79 FLKMNSLQTEDTAI--YFCTREDGWNYFDYWGPGTMVTVSS-AQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVT  155 (215)
T ss_dssp             EEEESSCCGGGCEE--EEEEECCSSSCSCCBCCCEEEEECS-SCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCE
T ss_pred             EEEECCCCcccCEE--EEEEEecCCcccceEcCCEEEEecC-CCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcE
Confidence            45666777778666  433222111     01112222221 11235666543333335679999999999986 877 9


Q ss_pred             eEEEeCCEECCCCCeEEEecCCEEEE--EEccCCCCCCeEEEEEEEeCCcceEEEE
Q psy12421         89 VKWYKGNRELSKRDYSMSYSDGVVSM--EIIDCKPEDSGEYKCVATNKHGTDETNC  142 (168)
Q Consensus        89 i~W~~~~~~~~~~~~~~~~~~~~~~l--~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  142 (168)
                      +.|++++..+..........++...+  .+......| |.|+|.|.|..|......
T Consensus       156 v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~~~~~~~-g~ytC~v~n~~~~~~~~~  210 (215)
T 1c5d_H          156 VTWNSGALSSDVHTFPAVLQSGLYTLTSSVTSSTWPS-QTVTCNVAHPASSTKVDK  210 (215)
T ss_dssp             EEEGGGTTCCSCCBCCCEEETTEEEEEEEEEESSTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             EEEccCCccCceEecCcccCCCCEEEEEEEecccCCC-CeEEEEEEeCCCCccEEE
Confidence            99999886543211111111232221  122333345 999999999988765433

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=98.77  E-value=6.7e-08  Score=66.08  Aligned_cols=74  Identities=22%  Similarity=0.391  Sum_probs=54.2

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--E---EC--------CCCCeEEEec---CCEEEEEEccCCCCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--R---EL--------SKRDYSMSYS---DGVVSMEIIDCKPEDS  124 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~---~~--------~~~~~~~~~~---~~~~~l~i~~~~~~d~  124 (168)
                      ...+....+.+|+++.|.|.+.+.+ +.+.|+++.  .   .+        ...++.+...   .+..+|.|.+++.+|+
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D~   83 (207)
T 1ypz_E            5 EQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLEDS   83 (207)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGGC
T ss_pred             EECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHHC
Confidence            3455567889999999999998754 589999853  1   11        1234444432   4556899999999999


Q ss_pred             eEEEEEEEeCC
Q psy12421        125 GEYKCVATNKH  135 (168)
Q Consensus       125 G~Y~C~a~n~~  135 (168)
                      |.|.|.+.+..
T Consensus        84 G~Y~C~~~~~~   94 (207)
T 1ypz_E           84 GTYFCAADTWH   94 (207)
T ss_dssp             EEEEEEEECBC
T ss_pred             EEEEEEEecCC
Confidence            99999999864

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=98.77  E-value=4.7e-08  Score=70.26  Aligned_cols=74  Identities=23%  Similarity=0.361  Sum_probs=54.4

Q ss_pred             eecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EECC------------------CCCeEEEe--cCCEEEEEEc
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RELS------------------KRDYSMSY--SDGVVSMEII  117 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~~------------------~~~~~~~~--~~~~~~l~i~  117 (168)
                      ..+....+.+|++++|.|.+.+.+  .+.+.|+++.  ..+.                  ..++.+..  ..+..+|.|.
T Consensus        27 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~  106 (291)
T 2gki_A           27 QQSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELS  106 (291)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEEC
T ss_pred             EcCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEEC
Confidence            345578899999999999998876  6899999853  1110                  12333322  2345589999


Q ss_pred             cCCCCCCeEEEEEEEeCC
Q psy12421        118 DCKPEDSGEYKCVATNKH  135 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~~  135 (168)
                      +++.+|+|.|.|.+.|..
T Consensus       107 ~v~~~DsG~Y~C~~~~~~  124 (291)
T 2gki_A          107 SLTSEDSAVYYCARGAYK  124 (291)
T ss_dssp             SCCGGGCEEEEEEEECGG
T ss_pred             cCCHHHCEEEEEEEeccc
Confidence            999999999999999874

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=98.77  E-value=5.4e-09  Score=71.42  Aligned_cols=70  Identities=14%  Similarity=0.256  Sum_probs=51.5

Q ss_pred             EecCCcEEEEEEEeccC----CCeeEEEeCCEECCCCCe--EEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         69 MQVRQTCKLLCCLSGKP----PPTVKWYKGNRELSKRDY--SMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~p----~p~i~W~~~~~~~~~~~~--~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      +.+|+++.|.|.+.|.+    .+.+.|++++..+.....  .....++    ...|.|.+++..|.|.|.|.|.|..|..
T Consensus        15 v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~   94 (207)
T 2vol_A           15 LTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFKCRVNSAAFPA   94 (207)
T ss_dssp             HSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEEEEEECTTCSS
T ss_pred             hccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEEEEEEccCCCC
Confidence            77899999999999884    248999999876542110  0001111    2368899999999999999999998864

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=98.77  E-value=8.3e-09  Score=73.20  Aligned_cols=125  Identities=14%  Similarity=0.104  Sum_probs=70.0

Q ss_pred             CceeEEEEeCCCCCCCCCCcccce-----eccCcceeeEeeecccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCC-e
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQV-----RRREPLQITFWQETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPP-T   88 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p-~   88 (168)
                      .|.+.+++..|.+.  |.|.....     .......+.+.. ....+|.+........+..|+.+.|.|.+.+. |.+ .
T Consensus        86 sL~I~~v~~~DsG~--Y~C~~~~~~~~~~~~~~~~~L~V~~-~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~  162 (261)
T 2xqy_G           86 YIQLSSLTSEDSAV--YYCGRLGYVYGFDYWGQGTTLTVSS-AKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVT  162 (261)
T ss_dssp             EEEECSCCGGGCEE--EEEEEECTTSSEEEECCCEEEEECS-SCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCE
T ss_pred             EEEEcCCCcccCeE--EEEEEecCCCcceEECCCEEEEEcc-CCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCE
Confidence            35566777778666  43322211     001112222221 11235666543333345679999999999885 766 9


Q ss_pred             eEEEeCCEECCCC-CeEEEecC---CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         89 VKWYKGNRELSKR-DYSMSYSD---GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        89 i~W~~~~~~~~~~-~~~~~~~~---~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      +.|++++..+... .......+   ....|.|......| |.|+|.|.|..........+
T Consensus       163 v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~~~  221 (261)
T 2xqy_G          163 LTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDKKI  221 (261)
T ss_dssp             EEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEEEe
Confidence            9999988654210 00111111   12368888888877 99999999976654443333

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=98.76  E-value=5.6e-08  Score=66.78  Aligned_cols=85  Identities=20%  Similarity=0.287  Sum_probs=57.1

Q ss_pred             ecCCeEEecCCcEEEEEEEecc--CCCeeEEEeCCE--E---C-----------------CCCCeEEEe--cCCEEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGNR--E---L-----------------SKRDYSMSY--SDGVVSMEI  116 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~~--~---~-----------------~~~~~~~~~--~~~~~~l~i  116 (168)
                      .+....+.+|+++.|.|.+.+.  +.+.+.|++...  .   +                 ...++.+..  ..+..+|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            4455778899999999999874  368999997421  0   0                 012333322  134557999


Q ss_pred             ccCCCCCCeEEEEEEEeCC--cceEEEEEEEEe
Q psy12421        117 IDCKPEDSGEYKCVATNKH--GTDETNCVVIVE  147 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~--g~~~~~~~l~v~  147 (168)
                      .+++.+|+|.|.|.+.|..  ........|.|.
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~  118 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVS  118 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEEC
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEe
Confidence            9999999999999999863  122233455554

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=98.76  E-value=1.7e-08  Score=62.39  Aligned_cols=74  Identities=18%  Similarity=0.313  Sum_probs=52.0

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--E---EC---CC-----------CCeEEEecCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--R---EL---SK-----------RDYSMSYSDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~---~~---~~-----------~~~~~~~~~~~~~l~i~~~~  120 (168)
                      +...+....+.+|++++|.|...+.+.+.+.||+..  .   .+   ..           .++......+. .|.|.+++
T Consensus         4 v~q~p~~~~v~~G~~vtL~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~Rf~~~~~~~~-~L~I~~~~   82 (112)
T 1fo0_B            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT-ELRLQVAN   82 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETT-EEEEEEES
T ss_pred             EEeCCCeEEEecCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEEeCCCceecCccccCCEEEEcCCCC-eEEEcCCC
Confidence            344556678889999999999977777899999842  1   11   00           12222212222 79999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12421        121 PEDSGEYKCVATNK  134 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~  134 (168)
                      .+|+|.|.|.+.+.
T Consensus        83 ~~Dsg~Y~C~~~~~   96 (112)
T 1fo0_B           83 MSQGRTLYCTCSAD   96 (112)
T ss_dssp             CCSCEEEEEEEESS
T ss_pred             HhHCEEEEEEEEcC
Confidence            99999999998864

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=98.75  E-value=3.2e-08  Score=61.32  Aligned_cols=71  Identities=21%  Similarity=0.356  Sum_probs=51.8

Q ss_pred             ecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCE--------EC---------------CCCCeEEEe--cCCEEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNR--------EL---------------SKRDYSMSY--SDGVVSMEI  116 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~--------~~---------------~~~~~~~~~--~~~~~~l~i  116 (168)
                      .+....+.+|++++|.|...+. +...+.|++...        .+               ...++.+..  ..+..+|.|
T Consensus         4 ~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~r~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (115)
T 2atp_B            4 TPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLSI   83 (115)
T ss_dssp             ECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEEE
T ss_pred             CCCCEEEcCCCcEEEEEEecCCCCcccEEEEEeCCCCCCCccEEEEEEeCCCCeEecCCCccCcEEEEEeCCCCEEEEEE
Confidence            4556778899999999998764 567899998542        11               013344433  333457999


Q ss_pred             ccCCCCCCeEEEEEEEe
Q psy12421        117 IDCKPEDSGEYKCVATN  133 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n  133 (168)
                      .+++.+|+|.|.|.+.+
T Consensus        84 ~~~~~~DsG~Y~C~~~~  100 (115)
T 2atp_B           84 MNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             CSCCGGGCEEEEEEEEC
T ss_pred             CCCCHHHCEEEEEeEcc
Confidence            99999999999999875

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=98.75  E-value=3.6e-09  Score=73.45  Aligned_cols=91  Identities=18%  Similarity=0.189  Sum_probs=55.2

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCC--CeeEEEeCCEECCCCC-eEEEecCC----EEEEEEccCCCCCCeEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRD-YSMSYSDG----VVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~G~Y  127 (168)
                      ..+|.+........+..|+.+.|.|.+.+.++  ..+.|++++..+.... ......++    .+.|.|......| |.|
T Consensus       130 ~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~y  208 (232)
T 3qhz_H          130 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY  208 (232)
T ss_dssp             CBCCEEEEECC-------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCC
T ss_pred             CCCCEEEEecccccccCCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEE
Confidence            35677664444445567999999999998554  3577999886332100 00111122    1257888888888 999


Q ss_pred             EEEEEeCCcceEEEEEEEE
Q psy12421        128 KCVATNKHGTDETNCVVIV  146 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l~v  146 (168)
                      +|.+.|..+.......|.+
T Consensus       209 tC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          209 ICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             EEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEeCCCCccEEEEeCC
Confidence            9999999887766666554

>2hp4_A T-cell surface glycoprotein CD8 alpha chain; CO-receptor, soluble protein, KD, protein engineering, immunotherapy, immune-suppressor, immune system; 2.10A {Homo sapiens} PDB: 1akj_D 1cd8_A 3qzw_G 2q3a_A

Probab=98.75  E-value=5e-08  Score=60.52  Aligned_cols=75  Identities=20%  Similarity=0.319  Sum_probs=54.3

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeC--CE-----EC----C----------CCCeEEEecCCEEEEEEc
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKG--NR-----EL----S----------KRDYSMSYSDGVVSMEII  117 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~--~~-----~~----~----------~~~~~~~~~~~~~~l~i~  117 (168)
                      +...+....+.+|++++|.|...+. +...+.||+.  +.     .+    .          ..++......+..+|.|.
T Consensus         3 ~~q~p~~v~v~~G~~vtL~C~~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~rf~~~~~~~~~~L~I~   82 (114)
T 2hp4_A            3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGASWLFQPRGAAASPTFLLYLNQNKPKAAEGLDTQRFSGKRLGDTFVLTLS   82 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEEESSSSCCCEEEEEESSSSCEECTTCCTTTEEEEEETTEEEEEES
T ss_pred             cEeCCCEEEEcCCCCEEEEEEeecCCCCceEEEEEECCCCCCCcEEEEEEcCCCccccCCCCcccEEEEecCCEEEEEEC
Confidence            4456667788899999999998754 3678999973  22     11    0          123433334455679999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy12421        118 DCKPEDSGEYKCVATNK  134 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~  134 (168)
                      +++.+|+|.|.|.+.+.
T Consensus        83 ~~~~~Dsg~Y~C~~~~~   99 (114)
T 2hp4_A           83 DFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SCCGGGCEEEEEEEEET
T ss_pred             CCCHHHCEEEEEEEecC
Confidence            99999999999998874

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=98.75  E-value=4e-08  Score=60.63  Aligned_cols=71  Identities=15%  Similarity=0.237  Sum_probs=51.5

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE-----ECC----------CCCeEEE--ecCCEEEEEEccCCCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR-----ELS----------KRDYSMS--YSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~-----~~~----------~~~~~~~--~~~~~~~l~i~~~~~~d~  124 (168)
                      ..+....+.+|++++|.|.+.+.+.+.+.|++...     .+.          ..++.+.  ...+..+|.|.+++.+|+
T Consensus         5 q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   84 (112)
T 2z35_A            5 QTGGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESDS   84 (112)
T ss_dssp             CSCSEEEEETTCCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEESSCCSTTC
T ss_pred             eCCCcEEEcCCCCEEEEEEECCCCCCeEEEEEECCCCCcEEeEEEecccCCccCCCEEEEEcCCCCEEEEEECCCChhhC
Confidence            34556788899999999999887788999998531     110          1233332  122344699999999999


Q ss_pred             eEEEEEEE
Q psy12421        125 GEYKCVAT  132 (168)
Q Consensus       125 G~Y~C~a~  132 (168)
                      |.|.|.+.
T Consensus        85 G~Y~C~~~   92 (112)
T 2z35_A           85 AVYYCALS   92 (112)
T ss_dssp             SEEEEEEE
T ss_pred             EEEEEEEE
Confidence            99999987

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=98.74  E-value=5.9e-08  Score=73.43  Aligned_cols=86  Identities=21%  Similarity=0.288  Sum_probs=60.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------------------CCCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------------------SKRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------------------~~~~~~~~~--~~~~~~l~i~~  118 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.|+++.  ..+                  ...++.+..  ..+..+|.|.+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (444)
T 1igt_B            6 ESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMSR   85 (444)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEECC
Confidence            45567889999999999998764  6789999852  211                  012333332  23456899999


Q ss_pred             CCCCCCeEEEEEEEeCCcce---EEEEEEEEee
Q psy12421        119 CKPEDSGEYKCVATNKHGTD---ETNCVVIVES  148 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~---~~~~~l~v~~  148 (168)
                      ++.+|+|.|.|.+.|..+..   .....|.|..
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~  118 (444)
T 1igt_B           86 LKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSS  118 (444)
T ss_dssp             CCGGGCEEEEEEEECSSSCEEEEBCCEEEEECS
T ss_pred             CCHHHCEEEEEEEecCCcccccccCcEEEEecC
Confidence            99999999999999976542   1234566653

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=98.74  E-value=4.1e-09  Score=74.61  Aligned_cols=120  Identities=12%  Similarity=0.145  Sum_probs=69.3

Q ss_pred             CceeEEEEeCCCCCCCCCCcccc----eeccCcceeeEee-ecccCCCeEEe-ecCCeEEecCCcEEEEEEEeccCCC--
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQ----VRRREPLQITFWQ-ETVESAPNFTF-LLRPRVMQVRQTCKLLCCLSGKPPP--   87 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~p~p--   87 (168)
                      .|.+.+++..|.|.  |.|....    ........+.+.. .....+|.+.. .+....+..|+.+.|.|.+.|.+++  
T Consensus       101 sL~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~  178 (268)
T 3pl6_D          101 TLKIQRTERGDSAV--YLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHV  178 (268)
T ss_dssp             EEEECSCCGGGCEE--EEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCE
T ss_pred             EEEECCCCcccCEE--EEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCCCe
Confidence            36677788888666  4333221    0111122222221 11223566543 3333445568999999999986665  


Q ss_pred             eeEEEeCCEECCCCCeEE---E-----ecCC----EEEEEEccCCCCC-CeEEEEEEEeCCcc
Q psy12421         88 TVKWYKGNRELSKRDYSM---S-----YSDG----VVSMEIIDCKPED-SGEYKCVATNKHGT  137 (168)
Q Consensus        88 ~i~W~~~~~~~~~~~~~~---~-----~~~~----~~~l~i~~~~~~d-~G~Y~C~a~n~~g~  137 (168)
                      .+.|+++|..+.......   .     ..++    ...|.+......| .|.|+|.+.|....
T Consensus       179 ~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~~g~YtC~v~~~~l~  241 (268)
T 3pl6_D          179 ELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  241 (268)
T ss_dssp             EEEEEESSSEECTTEEECSSCEESSTTCTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             EEEEEECCEECCCCeEeccccccccccCCCCcEEEEEEEEEcHHHhccCCCEEEEEEEcCCCC
Confidence            899999998775421100   0     0111    1246777776666 99999999998654

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=98.73  E-value=5.5e-08  Score=60.41  Aligned_cols=72  Identities=19%  Similarity=0.286  Sum_probs=52.7

Q ss_pred             eecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCC--E---EC-----C------CCCeEEE--ecCCEEEEEEccCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGN--R---EL-----S------KRDYSMS--YSDGVVSMEIIDCKPE  122 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~--~---~~-----~------~~~~~~~--~~~~~~~l~i~~~~~~  122 (168)
                      ..+....+.+|++++|.|...+. +.+.+.|++..  .   .+     .      ..++.+.  ...+...|.|.+++.+
T Consensus         5 q~p~~~~~~~G~~vtL~C~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~~~~~   84 (116)
T 1fo0_A            5 QTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQIE   84 (116)
T ss_dssp             CCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCGG
T ss_pred             cCCCcEEEecCCcEEEEeEecCCCCCeEEEEEEeCCCCCeEEEEEEccCCcCcccCCcEEEEEeCCCCEEEEEECCCChh
Confidence            34556788899999999999876 66689999852  1   11     0      1233332  2345668999999999


Q ss_pred             CCeEEEEEEEe
Q psy12421        123 DSGEYKCVATN  133 (168)
Q Consensus       123 d~G~Y~C~a~n  133 (168)
                      |+|.|.|.+.+
T Consensus        85 DsG~Y~C~~~~   95 (116)
T 1fo0_A           85 DSAVYFCAMRG   95 (116)
T ss_dssp             GCEEEEEEEEC
T ss_pred             hCEEEEEEEEc
Confidence            99999999987

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.73  E-value=7.8e-08  Score=68.09  Aligned_cols=76  Identities=26%  Similarity=0.368  Sum_probs=54.0

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC------------CCC-----CeEEEe-cCCEEEEEEc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL------------SKR-----DYSMSY-SDGVVSMEII  117 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~------------~~~-----~~~~~~-~~~~~~l~i~  117 (168)
                      +.+...+....+.+|+++.|.|.+.+ +.+.+.|++..  ..+            ...     ++.... ..+..+|.|.
T Consensus        28 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~  106 (270)
T 3qib_D           28 MKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQ  106 (270)
T ss_dssp             CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEES
T ss_pred             eeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEEC
Confidence            44555666788999999999999865 78899999832  100            000     222221 2335589999


Q ss_pred             cCCCCCCeEEEEEEEeC
Q psy12421        118 DCKPEDSGEYKCVATNK  134 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n~  134 (168)
                      +++.+|+|.|.|.+.+.
T Consensus       107 ~v~~~D~G~Y~C~~~~~  123 (270)
T 3qib_D          107 SSEAGDSALYLCASSLN  123 (270)
T ss_dssp             SCCGGGCEEEEEEEESC
T ss_pred             CCCHhHCeEEEEEEecC
Confidence            99999999999999964

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=98.72  E-value=9.9e-08  Score=66.27  Aligned_cols=71  Identities=17%  Similarity=0.327  Sum_probs=52.1

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C--------------CCCCeEEEe--cCCEEEEEEccC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L--------------SKRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~--------------~~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      .+....+.+|+++.|.|.+.+.+  .+.+.||++.  ..   +              ...++.+..  ..+..+|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (232)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence            44557888999999999998865  6789999853  11   1              013343332  234568999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      +.+|+|.|.|.+.+
T Consensus        86 ~~~D~G~Y~C~~~~   99 (232)
T 1dn0_B           86 TAADTAVYYCARPP   99 (232)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CcccCEEEEEEEec
Confidence            99999999999984

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=98.72  E-value=4e-09  Score=73.77  Aligned_cols=77  Identities=12%  Similarity=0.280  Sum_probs=51.3

Q ss_pred             EEecCCcEEEEEEEecc-CC-CeeEEEeCCE-ECCCCCe-EEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcceE
Q psy12421         68 VMQVRQTCKLLCCLSGK-PP-PTVKWYKGNR-ELSKRDY-SMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGTDE  139 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~-p~-p~i~W~~~~~-~~~~~~~-~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  139 (168)
                      .+..|+.+.|.|.+.|. |. +.+.|++++. .+..... .....++    ...|.|..... + |.|+|.+.|..+...
T Consensus       143 ~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~  220 (242)
T 1hxm_B          143 ETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNG  220 (242)
T ss_dssp             GGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGG
T ss_pred             hcccCCCceEEEEEeeEECCCeEEEEEcCCCEeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCC
Confidence            34569999999999986 64 7899999986 4532110 0111222    13577776654 4 999999999988765


Q ss_pred             EEEEEEE
Q psy12421        140 TNCVVIV  146 (168)
Q Consensus       140 ~~~~l~v  146 (168)
                      ....+.+
T Consensus       221 ~~~~~~~  227 (242)
T 1hxm_B          221 VDQEIIF  227 (242)
T ss_dssp             SCEEEEE
T ss_pred             ceeEeec
Confidence            5555554

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=98.71  E-value=2.8e-08  Score=77.66  Aligned_cols=117  Identities=12%  Similarity=0.129  Sum_probs=69.7

Q ss_pred             CCCceeEEEEeCCCCCCCCCCcccceeccCcce-eeEeeeccc---CCCeEEeecCCeEEecCCc-EEEEEEEec-cCCC
Q psy12421         14 PQDNPRLRTRAIPKTIPAYVPEVQQVRRREPLQ-ITFWQETVE---SAPNFTFLLRPRVMQVRQT-CKLLCCLSG-KPPP   87 (168)
Q Consensus        14 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~---~~p~~~~~~~~~~~~~g~~-~~l~C~~~g-~p~p   87 (168)
                      ...|.+.+++..|.+.  |.|   .+.+..... .......+.   ..|.+..  ....+..+.. +.|.|.+.+ .|.|
T Consensus       431 ~~~L~i~~v~~~D~G~--Y~C---~~~n~~~~~~~~~~~l~V~~~~~~p~i~~--~~~~~~~~~~~~~l~C~~~~~~P~~  503 (581)
T 3o3u_N          431 NGSLFLPAVGIQDEGI--FRC---QAMNRNGKETKSNYRVRVYQIPGKPEIVD--SASELTAGVPNKVGTCVSEGSYPAG  503 (581)
T ss_dssp             TSCEEESSCCGGGCEE--EEE---EEECTTSCEEEEEEEEEEEBCCCCCEEES--CCSEECTTSCEEEEEEEEEEEBSCC
T ss_pred             CceEEEeccccccCeE--EEE---EEEcCCCceeEEEEEEEEEcCCCCCEEEc--CCcccccCCceeEEEEECCCCCCCC
Confidence            3467788888888666  432   233322221 111122222   2344432  2233555554 467999988 6999


Q ss_pred             eeEEEeCCEECCCC--CeEEE----e--cCC----EEEEEEccCC-CCCCeEEEEEEEeCCcc
Q psy12421         88 TVKWYKGNRELSKR--DYSMS----Y--SDG----VVSMEIIDCK-PEDSGEYKCVATNKHGT  137 (168)
Q Consensus        88 ~i~W~~~~~~~~~~--~~~~~----~--~~~----~~~l~i~~~~-~~d~G~Y~C~a~n~~g~  137 (168)
                      .+.|++++..+...  ...+.    .  ..+    .++|.|..++ ..+.|.|+|.+.|..+.
T Consensus       504 ~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~  566 (581)
T 3o3u_N          504 TLSWHLDGKPLVPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPR  566 (581)
T ss_dssp             EEEEEETTEECCTTSTTEEEEEEEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCS
T ss_pred             eEEEEECCEECCCCCCeEEEEeeeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCC
Confidence            99999999988642  22111    1  111    2468898888 44588999999999754

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=98.71  E-value=6.6e-09  Score=72.61  Aligned_cols=91  Identities=19%  Similarity=0.231  Sum_probs=57.9

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEec-cCCC-eeEEEeCCEECCCCC-eEEEecCC----EEEEEEccCCCCCCeEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKRD-YSMSYSDG----VVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~G~Y  127 (168)
                      ..+|.+........+..|+.+.|.|.+.+ .|.+ .+.|++++..+.... ......++    ...|.|......| |.|
T Consensus       138 ~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~y  216 (239)
T 3tv3_H          138 TKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTY  216 (239)
T ss_dssp             CBCCEEEEECCCCCC--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCC
T ss_pred             CcCCEEEEECCChhhccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEE
Confidence            45677765544444557999999999988 4544 478999886432100 00111122    1257788888888 999


Q ss_pred             EEEEEeCCcceEEEEEEEE
Q psy12421        128 KCVATNKHGTDETNCVVIV  146 (168)
Q Consensus       128 ~C~a~n~~g~~~~~~~l~v  146 (168)
                      +|.+.|..+.......|.+
T Consensus       217 tC~v~h~~~~~~~~~~l~~  235 (239)
T 3tv3_H          217 ICNVNHKPSNTKVDKRVEP  235 (239)
T ss_dssp             EEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEECCCCceEEEEecc
Confidence            9999998877666555544

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=98.71  E-value=5.2e-08  Score=62.37  Aligned_cols=70  Identities=19%  Similarity=0.247  Sum_probs=52.1

Q ss_pred             CeEEecCCcEEEEEEEeccC---CCeeEEEeCCE-----EC----------CCCCeEEEecCCEEEEEEccCCCCCCeEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKP---PPTVKWYKGNR-----EL----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~~-----~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      ...+.+|++++|.|.+...+   .+.+.||+...     .+          ...++..........|.|.+++.+|+|.|
T Consensus        14 ~v~v~~G~~vtL~C~~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rf~~~~~~~~~sL~I~~v~~~DsG~Y   93 (135)
T 1p4b_L           14 ALTTSPGETVTLTCRSSTGAVTTSNYASWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGDKAALTITGAQTEDEAIY   93 (135)
T ss_dssp             EEEECTTCEEEEEEEETTSSCCGGGCCEEEEEEGGGEEEEEEETTTEECTTCCTTEEEEEETTEEEEEEESCCGGGCEEE
T ss_pred             cEEEcCCCCEEEEEEecCCCcCCCCEEEEEEECCCCCCEEEEEeCCccCCCCCCCEEEEcCCCEEEEEECCCChhHCEEE
Confidence            47788999999999997754   57799998531     11          02344444445566899999999999999


Q ss_pred             EEEEEeCC
Q psy12421        128 KCVATNKH  135 (168)
Q Consensus       128 ~C~a~n~~  135 (168)
                      .|.+.+..
T Consensus        94 ~C~~~~~~  101 (135)
T 1p4b_L           94 FCALWYSN  101 (135)
T ss_dssp             EEEEECSS
T ss_pred             EEEEecCC
Confidence            99998753

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=98.69  E-value=3.3e-08  Score=69.49  Aligned_cols=74  Identities=19%  Similarity=0.332  Sum_probs=51.9

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EE---C---CC----------C-CeEEEecCCEEEEEEccCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RE---L---SK----------R-DYSMSYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~---~---~~----------~-~~~~~~~~~~~~l~i~~~~~~  122 (168)
                      ..+....+.+|+++.|.|.+.+.+.+.+.||+..  ..   +   ..          . ++......... |.|.+++.+
T Consensus         6 q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~-L~I~~v~~~   84 (253)
T 3to4_D            6 QNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE-LRLQVANMS   84 (253)
T ss_dssp             EECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC-CEEEEESCS
T ss_pred             eCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe-EEEccCChh
Confidence            3455678889999999999888899999999831  10   0   00          0 22222222222 899999999


Q ss_pred             CCeEEEEEEEeCCc
Q psy12421        123 DSGEYKCVATNKHG  136 (168)
Q Consensus       123 d~G~Y~C~a~n~~g  136 (168)
                      |+|.|.|.+.+..+
T Consensus        85 DsG~Y~C~~~~~~~   98 (253)
T 3to4_D           85 QGRTLYCTSSADHW   98 (253)
T ss_dssp             SCEEEEEEEECSCC
T ss_pred             hCeEEEEEEecCCC
Confidence            99999999987643

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=98.68  E-value=8.2e-09  Score=72.01  Aligned_cols=120  Identities=11%  Similarity=0.130  Sum_probs=70.1

Q ss_pred             CceeEEEEeCCCCCCCCCCcccc------eeccCcceeeEeee-cccCCCeEEe-ecCCeEEecCCcEEEEEEEecc-CC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQ------VRRREPLQITFWQE-TVESAPNFTF-LLRPRVMQVRQTCKLLCCLSGK-PP   86 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g~-p~   86 (168)
                      .|.+.+++..|.|.  |.|....      ........+.+... ....+|.+.. .+....+..|+.+.|.|.+.|. |.
T Consensus        77 sL~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~  154 (245)
T 4ei6_B           77 TLKIQPTALEDSAV--YFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  154 (245)
T ss_dssp             EEEECSCCGGGCEE--EEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS
T ss_pred             EEEECCCCHhHCEE--EEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCC
Confidence            46777888888666  4333221      11112222222210 1124565543 3333445569999999999984 44


Q ss_pred             C-eeEEEeCCEECCCCCeEEE----e----cCCE----EEEEEccCCCCC-CeEEEEEEEeCCcc
Q psy12421         87 P-TVKWYKGNRELSKRDYSMS----Y----SDGV----VSMEIIDCKPED-SGEYKCVATNKHGT  137 (168)
Q Consensus        87 p-~i~W~~~~~~~~~~~~~~~----~----~~~~----~~l~i~~~~~~d-~G~Y~C~a~n~~g~  137 (168)
                      + .+.|+++|..+........    .    .++.    ..|.|......| .|.|+|.+.|....
T Consensus       155 ~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~  219 (245)
T 4ei6_B          155 HVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (245)
T ss_dssp             CEEEEEEETTEEECTTEEECSSCEESSTTSTTCCEEEEEEEEEEHHHHSCTTCEEEEEEEECCBC
T ss_pred             CeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEECCCC
Confidence            4 8999999988754221100    0    1221    247777777777 89999999997544

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.67  E-value=1e-08  Score=70.09  Aligned_cols=56  Identities=14%  Similarity=0.333  Sum_probs=44.6

Q ss_pred             EecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         69 MQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      +.+|+++.|.|.+   |.+.+.|+|++..+...    ....+  .|.|.++...|+|.|+|.+.+
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~l~~~----~~~~~--~L~i~~v~~~DsG~Y~C~~~~   70 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKMIGFL----TEDKK--KWNLGSNAKDPRGMYQCKGSQ   70 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEEEEEE----ESSCC--CEEEEEGGGCCEEEEEEESSS
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEECCCC----CCCCC--eEEeCCCCcCCCEEEEEEecC
Confidence            3579999999997   88999999999876421    11222  689999999999999999754

>3noi_A Natural cytotoxicity triggering receptor 3; immune system, innate immunity, immunoglobulin-like I2 type natural killer cell activation; HET: 1PG; 1.84A {Homo sapiens} PDB: 3pv6_B*

Probab=98.66  E-value=6.7e-08  Score=60.40  Aligned_cols=72  Identities=15%  Similarity=0.252  Sum_probs=51.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC----CCeeEEEeCC----EECCC------CCeEEEe-----cCCEEEEEEccCCCCC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP----PPTVKWYKGN----RELSK------RDYSMSY-----SDGVVSMEIIDCKPED  123 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~~----~~~~~------~~~~~~~-----~~~~~~l~i~~~~~~d  123 (168)
                      .+....+.+|+++.|.|.+...+    ...+.|+++.    ..+..      .++....     ..+..+|.|.+++.+|
T Consensus        13 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~~~g~~~~~~~~~~~~R~~~~~~~~~~~~~~~sL~I~~v~~~D   92 (120)
T 3noi_A           13 QPPEIRTLEGSSAFLPCSFNASQGRLAIGSVTWFRDEVVPGKEVRNGTPEFRGRLAPLASSRFLHDHQAELHIRDVRGHD   92 (120)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTSCCCEEEEEEESSCSTTCBCCTTCTTTTTCEECCCHHHHHTTCBCCEEESSCCGGG
T ss_pred             CCCEEEEEcCCCEEEEeeecCCCCCCceeEEEEEeccCCCCceecccccccCCcEEeecccccccCCcEEEEEecCChhh
Confidence            34457788999999999988765    5579999975    32221      1222111     2334479999999999


Q ss_pred             CeEEEEEEEeC
Q psy12421        124 SGEYKCVATNK  134 (168)
Q Consensus       124 ~G~Y~C~a~n~  134 (168)
                      +|.|.|.+...
T Consensus        93 sG~Y~C~v~~~  103 (120)
T 3noi_A           93 ASIYVCRVEVL  103 (120)
T ss_dssp             CEEEEEEEEET
T ss_pred             CEEEEEEEEEC
Confidence            99999998854

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.66  E-value=8.1e-09  Score=73.22  Aligned_cols=121  Identities=10%  Similarity=0.143  Sum_probs=69.8

Q ss_pred             CceeEEEEeCCCCCCCCCCcccce------eccCcceeeEee-ecccCCCeEEe-ecCCeEEecCCcEEEEEEEec-cCC
Q psy12421         16 DNPRLRTRAIPKTIPAYVPEVQQV------RRREPLQITFWQ-ETVESAPNFTF-LLRPRVMQVRQTCKLLCCLSG-KPP   86 (168)
Q Consensus        16 ~~~~~~~~~~d~~~~~~~~~~~~~------~~~~~~~~~~~~-~~~~~~p~~~~-~~~~~~~~~g~~~~l~C~~~g-~p~   86 (168)
                      .|.+.+++..|.+.  |.|....-      .......+.+.. .....+|.+.. .+....+..|+.+.|.|.+.| .|.
T Consensus       102 sL~I~~v~~~D~G~--Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~  179 (270)
T 3qib_D          102 SLEIQSSEAGDSAL--YLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  179 (270)
T ss_dssp             EEEESSCCGGGCEE--EEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSS
T ss_pred             EEEECCCCHhHCeE--EEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCC
Confidence            46677888888666  43332210      011112222221 11223566543 333334456999999999998 666


Q ss_pred             C-eeEEEeCCEECCCCCeEE--------EecCC----EEEEEEccCCCCC-CeEEEEEEEeCCcce
Q psy12421         87 P-TVKWYKGNRELSKRDYSM--------SYSDG----VVSMEIIDCKPED-SGEYKCVATNKHGTD  138 (168)
Q Consensus        87 p-~i~W~~~~~~~~~~~~~~--------~~~~~----~~~l~i~~~~~~d-~G~Y~C~a~n~~g~~  138 (168)
                      | .+.|+++|..+.......        ...++    ...|.|......| .|.|+|.+.|.....
T Consensus       180 ~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~l~~  245 (270)
T 3qib_D          180 HVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYGLSE  245 (270)
T ss_dssp             CEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECCBCT
T ss_pred             CeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecCCCC
Confidence            6 799999998875421100        00112    1246777776667 999999999986543

>4esk_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, domain swapping, collagen receptor, structural genomics; 1.76A {Mus musculus}

Probab=98.65  E-value=2.7e-07  Score=56.10  Aligned_cols=85  Identities=13%  Similarity=0.078  Sum_probs=55.9

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCC----CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPP----PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~----p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      +|.+...+ +..+..|+.++|.| ... ..    ..+.|+|++.....  ...........|.|..++..|+|.|.|...
T Consensus         9 kPsL~a~p-~~~v~~G~~VTL~C-~~~-~~~~~~~~f~l~k~g~~~~~--~~~~~~~~~a~f~i~~vt~~~aG~Y~C~~~   83 (102)
T 4esk_A            9 DITIFPNS-SLMISQGTFVTVVC-SYS-DKHDLYNMVRLEKDGSTFME--KSTEPYKTEDEFEIGPVNETITGHYSCIYS   83 (102)
T ss_dssp             EEEEECCS-EEEEETTCCEEEEE-ECT-TTGGGCCEEEEEETTEEEEE--EECCSSCSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEeC-CCcccCCCcEEEEE-CCC-cCCCcccEEEEEECCccccc--cccCCCCcceEEEeCcCCcccCeeEEEEEe
Confidence            34444333 35788899999999 643 33    57899999865421  010112334579999999999999999998


Q ss_pred             eCCcceEE--EEEEEE
Q psy12421        133 NKHGTDET--NCVVIV  146 (168)
Q Consensus       133 n~~g~~~~--~~~l~v  146 (168)
                      +..+....  .+.|.|
T Consensus        84 ~~~~~S~~Sdpl~L~V   99 (102)
T 4esk_A           84 KGITWSERSKTLELKV   99 (102)
T ss_dssp             ETTTEEEECCCEEEEE
T ss_pred             CCCccccCcCCEEEEE
Confidence            87664332  334444

>4ety_A LAIR-1, mlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, extra celluar domain, domain swappin nysgrc, structural genomics; 1.90A {Mus musculus}

Probab=98.64  E-value=1.3e-07  Score=59.12  Aligned_cols=88  Identities=13%  Similarity=0.066  Sum_probs=55.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCC----CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPP----PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~----p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      +|.+...+ +..+..|+.++|.| .. ...    -.+.|+|++.....  ...........|.|..++..|+|.|.|...
T Consensus         9 kPsL~a~P-~~vV~~G~~VTL~C-~~-~~~~~~~~~f~L~k~g~~~~~--~~~~~~~~~a~f~i~~vt~~daG~Y~C~y~   83 (118)
T 4ety_A            9 DITIFPNS-SLMISQGTFVTVVC-SY-SDKHDLYNMVRLEKDGSTFME--KSTEPYKTEDEFEIGPVNETITGHYSCIYS   83 (118)
T ss_dssp             EEEEECCS-EEEEETTCCEEEEE-EC-TTTGGGCCEEEEEETTEEEEE--EECCSSSSEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CCEEEEeC-CCcccCCCcEEEEE-CC-CCCCcccCEEEEEECCcCccc--cccCCCCcceEEEeCccCccCCeEEEEEee
Confidence            34444333 36788999999999 64 333    57899999875431  000012234479999999999999999988


Q ss_pred             eCCcce--EEEEEEEEeeC
Q psy12421        133 NKHGTD--ETNCVVIVESE  149 (168)
Q Consensus       133 n~~g~~--~~~~~l~v~~~  149 (168)
                      +..+..  +..+.|.|.+.
T Consensus        84 ~~~~wS~~Sdpl~L~Vtg~  102 (118)
T 4ety_A           84 KGITWSERSKTLELKVIKE  102 (118)
T ss_dssp             C----CEECCCEEEEEECC
T ss_pred             CCCccccccCCEEEEEEEe
Confidence            776543  23445555543

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=98.64  E-value=5.4e-08  Score=66.33  Aligned_cols=81  Identities=15%  Similarity=0.247  Sum_probs=50.1

Q ss_pred             CeEEeecCCeEE--ecCCcEEEEEEEeccCC----CeeEEEeCCEECCCCC--eEEEecCCEE----EEEEccCCCCCCe
Q psy12421         58 PNFTFLLRPRVM--QVRQTCKLLCCLSGKPP----PTVKWYKGNRELSKRD--YSMSYSDGVV----SMEIIDCKPEDSG  125 (168)
Q Consensus        58 p~~~~~~~~~~~--~~g~~~~l~C~~~g~p~----p~i~W~~~~~~~~~~~--~~~~~~~~~~----~l~i~~~~~~d~G  125 (168)
                      |.+...+....+  .+|+++.|.|.+.|.++    +.+.|++++..+....  ......++..    .|.|......|.|
T Consensus         2 P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g   81 (207)
T 1l6x_A            2 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGK   81 (207)
T ss_dssp             CEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             CeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccCcccCCceeccCCcEEEEEEEEEEHHHccCCc
Confidence            444444444333  68999999999998753    4999999997664321  1111223311    1222222334499


Q ss_pred             EEEEEEEeCCcce
Q psy12421        126 EYKCVATNKHGTD  138 (168)
Q Consensus       126 ~Y~C~a~n~~g~~  138 (168)
                      .|+|.|.|..+..
T Consensus        82 ~Y~C~a~n~~~~~   94 (207)
T 1l6x_A           82 EYKCKVSNKALPA   94 (207)
T ss_dssp             CEEEEEECTTSSS
T ss_pred             eEEEEEEcCcCCc
Confidence            9999999998764

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1

Probab=98.63  E-value=5e-07  Score=56.69  Aligned_cols=74  Identities=18%  Similarity=0.256  Sum_probs=52.3

Q ss_pred             eecCCeEEecCCcEEEEEEEecc--CCCeeEEEeCCE------ECC---------CCCeEE--EecCCEEEEEEccCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGNR------ELS---------KRDYSM--SYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~~------~~~---------~~~~~~--~~~~~~~~l~i~~~~~~  122 (168)
                      ..+....+.+|++++|.|.....  ....+.|++...      .+.         ..++.+  ....+..+|.|.+++.+
T Consensus        15 ~~~~~v~~~~G~svtL~C~~s~~~~~~~~v~W~rq~~~~~~~~li~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~l~~~   94 (122)
T 1hkf_A           15 SKAQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREE   94 (122)
T ss_dssp             CCCEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             cCCceEEEecCCCEEEEeEccCCCCcccEEEEEcCCCCCCceEEEEeCCeEeEeecCcEEEEEcCcCCEEEEEEeCCCHH
Confidence            34445678899999999998653  236799998531      110         133443  22455678999999999


Q ss_pred             CCeEEEEEEEeCC
Q psy12421        123 DSGEYKCVATNKH  135 (168)
Q Consensus       123 d~G~Y~C~a~n~~  135 (168)
                      |+|.|.|.+....
T Consensus        95 Dsg~Y~C~v~~~~  107 (122)
T 1hkf_A           95 DSGHYWCRIYRPS  107 (122)
T ss_dssp             GCEEEEEEEECTT
T ss_pred             HCEEEEEEEEcCC
Confidence            9999999988764

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=98.63  E-value=9.5e-07  Score=55.58  Aligned_cols=76  Identities=18%  Similarity=0.273  Sum_probs=54.6

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--E---EC-------------CCCCeEEEe-cCCEEEEEEccC
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--R---EL-------------SKRDYSMSY-SDGVVSMEIIDC  119 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~---~~-------------~~~~~~~~~-~~~~~~l~i~~~  119 (168)
                      .+...+....+.+|++++|.|.........+.||+..  .   .+             ...++.... ..+..+|.|.++
T Consensus         7 ~V~Q~p~~~~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~Rf~~~~~~~~~~sL~I~~~   86 (125)
T 3r8b_B            7 AVTQSPRNKVAVTGEKVTLSCKQTNSYFNNMYWYRQDTGHELRLIFMSHGIRNVEKGDIPDGYKASRPSQENFSLILELA   86 (125)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESCCCSEEEEEEECTTSCEEEEEEESSTTCCEECSSCTTCEEEEEETTEEEEEETTC
T ss_pred             cEEecCCeEEEcCCCcEEEEEEECCCCCCeEEEEEECCCCCcEEEEEEcCCccccCCCCCCceEEEecCCCEEEEEECCC
Confidence            4555666778899999999999887665689999842  1   01             012233321 245678999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12421        120 KPEDSGEYKCVATNK  134 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~  134 (168)
                      +.+|+|.|.|.+.+.
T Consensus        87 ~~~Dsg~Y~C~~~~~  101 (125)
T 3r8b_B           87 TPSQTSVYFCASGGG  101 (125)
T ss_dssp             CGGGCEEEEEEEEET
T ss_pred             ChhhCEEEEEEEcCC
Confidence            999999999998764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-19
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	8e-17
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-16
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	8e-16
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	9e-16
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-14
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-13
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	3e-13
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-12
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	3e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-12
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-12
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-12
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	5e-12
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-11
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-11
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	5e-11
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	7e-11
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-10
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	7e-10
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	8e-10
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	9e-10
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-09
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	2e-09
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	2e-09
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-09
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	8e-09
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	1e-08
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	1e-08
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-08
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	2e-08
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	1e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	3e-07
d2ifga1	92	b.1.1.4 (A:192-283) High affinity nerve growth fac	4e-07
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	2e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	6e-06
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	7e-06
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	3e-05
d1hnga1	98	b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus no	3e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	3e-05
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	5e-05
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	6e-05
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	1e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	2e-04
d1vcaa2	90	b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1	2e-04
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	3e-04
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	4e-04
d1fnla2	89	b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (C	6e-04
d1nbqa1	105	b.1.1.1 (A:25-129) Junction adhesion molecule, JAM	9e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	0.001
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.001

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 76.4 bits (187), Expect = 2e-19
 Identities = 26/96 (27%), Positives = 39/96 (40%), Gaps = 6/96 (6%)

Query: 57  APNFTFLLR--PRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNREL--SKRDYSMSYSDG 110
           AP +T   +   R+  V    T K  C   G P PT++W K  +E     R       + 
Sbjct: 1   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQ 60

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
             S+ +    P D G Y CV  N++G+      + V
Sbjct: 61  HWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.5 bits (169), Expect = 8e-17
 Identities = 16/90 (17%), Positives = 38/90 (42%), Gaps = 1/90 (1%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEI 116
           P        + ++  ++ +L   ++G  P T  W K  +++ + +   +  S+    + I
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTI 60

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           +  + E  G Y  +  NK G+ +    + V
Sbjct: 61  LAARQEHCGCYTLLVENKLGSRQAQVNLTV 90

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 67.2 bits (163), Expect = 6e-16
 Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 2/94 (2%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSM 114
           AP     ++ + +           + GKP P  +WYK   ++ +  R Y     D V  +
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            I D   EDS      A N  G   ++  ++V++
Sbjct: 64  VIRDVTGEDSASIMVKAINIAGETSSHAFLLVQA 97

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 66.8 bits (162), Expect = 8e-16
 Identities = 22/100 (22%), Positives = 39/100 (39%), Gaps = 2/100 (2%)

Query: 51  QETVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYS 108
           +E     P FT  +    +      +  C + G P P V W+K +  + +          
Sbjct: 2   EEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDE 61

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           +G  S+ I +   +D  +Y C A N  G       ++VE+
Sbjct: 62  EGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVET 101

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 66.3 bits (161), Expect = 9e-16
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 5/92 (5%)

Query: 56  SAPNFTF-LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM 114
           SAP +     +  V++  Q   + C ++G P P V W    + LS    +++ S     +
Sbjct: 1   SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSG----L 56

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            I   K  D G Y C ATN+HG      +V V
Sbjct: 57  VIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 1e-14
 Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 3/89 (3%)

Query: 62  FLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVV-SMEIID 118
            L +PR M V   ++ +  C   G+P PTV W +  + LS        +     + EI  
Sbjct: 2   ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS 61

Query: 119 CKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            +  D G Y  V  N  G  E    + ++
Sbjct: 62  VQASDEGNYSVVVENSEGKQEAEFTLTIQ 90

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 61.4 bits (148), Expect = 1e-13
 Identities = 27/95 (28%), Positives = 38/95 (40%), Gaps = 1/95 (1%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEI 116
           P F        +   Q+    C +    PP V W+K +REL +   Y   Y+     + I
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTI 61

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEE 151
              K +D GEY   A N +GT E    + V    E
Sbjct: 62  NRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHSE 96

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 59.9 bits (144), Expect = 3e-13
 Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEII 117
           P++  ++      +    +  C  SGKP P V+W +  + L+ ++           +   
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG---ELRFS 58

Query: 118 DCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
               EDSG Y+CVA NKHGT   +  + V++
Sbjct: 59  KLVLEDSGMYQCVAENKHGTVYASAELTVQA 89

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 2e-12
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 14/88 (15%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNREL--------------SKRDYSMSYSDGVVSMEIID 118
              + +C +     P ++W K   +                K     +    +  + I +
Sbjct: 21  GDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRN 80

Query: 119 CKPEDSGEYKCVATNKHGTDETNCVVIV 146
              ED+GEY C+A N  G    +  + V
Sbjct: 81  VTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.7 bits (138), Expect = 3e-12
 Identities = 24/105 (22%), Positives = 41/105 (39%), Gaps = 15/105 (14%)

Query: 58  PNFTFLLRPRVMQVR--QTCKLLCCLSGKP---PPTVKWYK----------GNRELSKRD 102
           P   F++RP+  +V    +      ++G     PP VKW+K          G        
Sbjct: 3   PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDS 62

Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
           Y  +    +  + I D +P  +G Y+C  + K   D +N  + V 
Sbjct: 63  YDRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.7 bits (138), Expect = 3e-12
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 10/100 (10%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNREL---------SKRDYSMSY 107
           P+   +  P  + +     L C    G PP    W+K    +         +  + S + 
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
                 +        DSGEY C A N +GT   +    ++
Sbjct: 63  DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 102

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (136), Expect = 4e-12
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 6/88 (6%)

Query: 66  PRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDY---SMSYSDGVVSMEIIDCK 120
           P  + V   Q  KL C + G   P ++W K    +   D     +S    +  + +   +
Sbjct: 3   PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 121 PEDSGEYKCVATNKHGTDETNCV-VIVE 147
             D+G Y C   +   T+ +  V + VE
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTVE 90

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.9 bits (136), Expect = 4e-12
 Identities = 17/90 (18%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 61  TFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIID 118
            F   P   + +  +   ++C +    PPT+ W    R++  +            ++I  
Sbjct: 3   MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRG 62

Query: 119 CKPEDSGEYKCVATNKHG--TDETNCVVIV 146
            K  D G Y+C          +  +  VIV
Sbjct: 63  IKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 56.8 bits (136), Expect = 5e-12
 Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELS---KRDYSMSYSDGVVSMEIIDCKPEDSGEYKC 129
           Q+  L+C   G P PT+ W K    +    + D    +SD    + I +    D  EY C
Sbjct: 21  QSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVC 80

Query: 130 VATNKHGTDETNCVVIV 146
           +A NK G  + +  + V
Sbjct: 81  IAENKAGEQDASIHLKV 97

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 4e-11
 Identities = 20/99 (20%), Positives = 42/99 (42%), Gaps = 9/99 (9%)

Query: 54  VESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS------KRDYSMSY 107
           V  AP  TFL  P        C +   + G P P ++W+     L+       + +  ++
Sbjct: 1   VHFAPTITFLESPTS--DHHWC-IPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNH 57

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           ++    +++ +    ++G+Y  +A N++G DE       
Sbjct: 58  TEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (130), Expect = 5e-11
 Identities = 11/85 (12%), Positives = 32/85 (37%), Gaps = 9/85 (10%)

Query: 70  QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY--------SMSYSDGVVSMEIIDCKP 121
           ++   C +   + G+P P+++W      L++  +        + + +     + +     
Sbjct: 14  EMHHWC-IPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTH 72

Query: 122 EDSGEYKCVATNKHGTDETNCVVIV 146
            ++G Y  +A N  G    + +   
Sbjct: 73  VNNGNYTLLAANPFGQASASIMAAF 97

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 54.1 bits (129), Expect = 5e-11
 Identities = 20/76 (26%), Positives = 30/76 (39%), Gaps = 5/76 (6%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT 132
           Q   L C   G P P +KW K +        +  +      + I +   ED G Y+C A 
Sbjct: 21  QMVTLECFAFGNPVPQIKWRKLDG-----SQTSKWLSSEPLLHIQNVDFEDEGTYECEAE 75

Query: 133 NKHGTDETNCVVIVES 148
           N  G D     +I+ +
Sbjct: 76  NIKGRDTYQGRIIIHA 91

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.9 bits (128), Expect = 7e-11
 Identities = 15/94 (15%), Positives = 35/94 (37%), Gaps = 5/94 (5%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL----SKRDYSMSYSDGVV 112
            P+F  + +   +   Q     C   G+     + +    ++     K     S    + 
Sbjct: 2   TPHFLRI-QNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIA 60

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
           S  +++    D+G+Y+C+   + G   +N   +V
Sbjct: 61  SFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELV 94

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-10
 Identities = 22/113 (19%), Positives = 32/113 (28%), Gaps = 32/113 (28%)

Query: 66  PRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD--------------------- 102
           P  + V      +L   +SG P PTV W K   + +K                       
Sbjct: 16  PDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDK 75

Query: 103 ---------YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                      +  +       +   + ED G Y     N  G D+ N  V V
Sbjct: 76  KLLCETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (122), Expect = 7e-10
 Identities = 20/99 (20%), Positives = 31/99 (31%), Gaps = 8/99 (8%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-----KRDYSMSY 107
           TV   P    L  P   ++R    +   + G PPPT+ W    + L        +Y    
Sbjct: 1   TVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 57

Query: 108 SDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                 +        ++G Y  +A N  GT         
Sbjct: 58  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 96

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.7 bits (120), Expect = 8e-10
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 7/93 (7%)

Query: 58  PNFTFLLRPRVMQVR--QTCKLLCC-LSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM 114
           P    +   R   VR       +C   S  P  T+ W + +                  +
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG----IL 56

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
            I + +P D+G Y C  +N    D+    + V+
Sbjct: 57  TIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 89

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 9e-10
 Identities = 23/102 (22%), Positives = 36/102 (35%), Gaps = 9/102 (8%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLC-CLSGKPPPTVKWYKGNRE--------LSKRDYSMSYS 108
           P+   +  P    +     L C    G PP    W+K             +  + S   +
Sbjct: 3   PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLN 62

Query: 109 DGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEE 150
                +        D+GEY C A N +GT  T+  V +E+ E
Sbjct: 63  PTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.1 bits (121), Expect = 1e-09
 Identities = 22/86 (25%), Positives = 30/86 (34%), Gaps = 5/86 (5%)

Query: 61  TFLLRPRVMQVR-----QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSME 115
            F  +P           +   L C     PP T +W     EL     S         + 
Sbjct: 6   VFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLVI 65

Query: 116 IIDCKPEDSGEYKCVATNKHGTDETN 141
               K +D+G Y+CVATN  GT  + 
Sbjct: 66  SNPVKAKDAGSYQCVATNARGTVVSR 91

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-09
 Identities = 15/97 (15%), Positives = 32/97 (32%), Gaps = 9/97 (9%)

Query: 62  FLLRPRVMQVR--QTCKLLCCLSGKP-PPTVKWYKGNRELSKRD------YSMSYSDGVV 112
           ++ R     +      +L C +      P V W K N     +       +    +    
Sbjct: 6   YIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFF 65

Query: 113 SMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESE 149
            +      P D+G Y+C A  +    E++   +  ++
Sbjct: 66  ILHFEPVLPNDNGSYRCSANFQSNLIESHSTTLYVTD 102

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.4 bits (119), Expect = 2e-09
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 15/107 (14%)

Query: 62  FLLRPRVMQVR--QTCKLLCCLSGKPP---PTVKWYKGNREL----------SKRDYSMS 106
           F+ +P+   V+  +    +  +  +     PT+KW+KG               K  +   
Sbjct: 3   FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVESEEESK 153
                  M+II  K   +G Y+C  T K   D  +  + V     + 
Sbjct: 63  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGTT 109

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.6 bits (117), Expect = 3e-09
 Identities = 23/92 (25%), Positives = 32/92 (34%), Gaps = 1/92 (1%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM-E 115
            P      R   ++   T  L     G P PT  W  G+   +     +  +    +   
Sbjct: 2   KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIF 61

Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVE 147
               K  DSG YK    N+ G DE    VIV+
Sbjct: 62  FPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.1 bits (113), Expect = 8e-09
 Identities = 17/94 (18%), Positives = 24/94 (25%), Gaps = 14/94 (14%)

Query: 57  APNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSM 114
            P       P             +C   G P P +K  K              +  +   
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLK------------DGTFPLPIG 49

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
           E +    +  G Y C A +  G       V V S
Sbjct: 50  ESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 83

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 1e-08
 Identities = 20/98 (20%), Positives = 36/98 (36%), Gaps = 9/98 (9%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--------RELSKRDYSMSYSD 109
           P    +     +   +T  L+C     PP T   +              S+  + +S S 
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ 62

Query: 110 GVVSMEIID-CKPEDSGEYKCVATNKHGTDETNCVVIV 146
           G   + I +     D G+Y+C  T+  G+D+    + V
Sbjct: 63  GRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 1e-08
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 4/81 (4%)

Query: 60  FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL---SKRDYSMSYSDGVVSMEI 116
            T  L        +  +L C +S      VKW+K   E+    K  Y +        + I
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILII 61

Query: 117 IDCKPEDSGEYKCVATNKHGT 137
                 D+ EY  + T    +
Sbjct: 62  EGATKADAAEYSVMTTGGQSS 82

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.7 bits (112), Expect = 1e-08
 Identities = 12/93 (12%), Positives = 32/93 (34%), Gaps = 1/93 (1%)

Query: 57  APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN-RELSKRDYSMSYSDGVVSME 115
            P         + +      L C + G        +K + +  + ++++ +      S+ 
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLV 61

Query: 116 IIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            +  +  D G Y+C A    G   +  +   ++
Sbjct: 62  FLRPQASDEGHYQCFAETPAGVASSRVISFRKT 94

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.2 bits (111), Expect = 2e-08
 Identities = 11/85 (12%), Positives = 26/85 (30%), Gaps = 3/85 (3%)

Query: 62  FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR---ELSKRDYSMSYSDGVVSMEIID 118
           ++ +  + +      + C     P     ++K  +      +   +         +    
Sbjct: 8   YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKT 67

Query: 119 CKPEDSGEYKCVATNKHGTDETNCV 143
             PED G Y C   N  G  + + +
Sbjct: 68  TLPEDEGVYTCEVDNGVGKPQKHSL 92

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 1e-07
 Identities = 15/79 (18%), Positives = 22/79 (27%), Gaps = 11/79 (13%)

Query: 78  LCCLSGKPPPTVKWYK-----------GNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGE 126
               S  P   V W K             R  S     +       S+ I +    D  E
Sbjct: 15  FHVPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDE 74

Query: 127 YKCVATNKHGTDETNCVVI 145
           Y+  + N   T +    V+
Sbjct: 75  YEMESPNITDTMKFFLYVL 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 2e-07
 Identities = 19/87 (21%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 55  ESAPNFTFLLRPRVMQVR--QTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDG 110
           + +  F   L P   QV      +L   L+      VKW K  +E+      Y       
Sbjct: 3   KKSTAFQKKLEP-AYQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFESIGA 60

Query: 111 VVSMEIIDCKPEDSGEYKCVATNKHGT 137
             ++ I  C   D   Y+CV   +  +
Sbjct: 61  KRTLTISQCSLADDAAYQCVVGGEKCS 87

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (104), Expect = 3e-07
 Identities = 14/88 (15%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 66  PRVMQVRQTCKLLCCL------SGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDC 119
            + + V     L+C             P ++WYK  + L   +   S       + +++ 
Sbjct: 8   KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--RLIVMNV 65

Query: 120 KPEDSGEYKCVATNKHGTDETNCVVIVE 147
             +  G Y C A+  +   +     ++E
Sbjct: 66  AEKHRGNYTCHASYTYLGKQYPITRVIE 93

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.0 bits (102), Expect = 4e-07
 Identities = 15/89 (16%), Positives = 22/89 (24%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEII 117
           P     +    + V     L C + G+      W     E S           +      
Sbjct: 3   PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKSGGLPSLGLTLAN 62

Query: 118 DCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                +     C A N  G  E +  V V
Sbjct: 63  VTSDLNRKNVTCWAENDVGRAEVSVQVNV 91

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 2e-06
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 10/109 (9%)

Query: 53  TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSD--- 109
           TV   P  +   + +     +  ++ C +   PPP    +     + +   S  Y+    
Sbjct: 3   TVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETI 61

Query: 110 -----GVVSMEIIDCKPE-DSGEYKCVATNKHGTDETNCVVIVESEEES 152
                 + ++ I +         Y C A N  G+D     +  +  E S
Sbjct: 62  STEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS 110

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (95), Expect = 6e-06
 Identities = 13/92 (14%), Positives = 29/92 (31%), Gaps = 14/92 (15%)

Query: 69  MQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-------------KRDYSMSYSDGVVSME 115
           + +    +L+C ++G+      W      +              +   +   S  +  + 
Sbjct: 14  VDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLN 73

Query: 116 IIDCKPEDSG-EYKCVATNKHGTDETNCVVIV 146
           I + +       + C A N HG D     +I 
Sbjct: 74  ISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.2 bits (95), Expect = 7e-06
 Identities = 14/82 (17%), Positives = 23/82 (28%)

Query: 66  PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG 125
             V   R     +  L                        S  +G V++ I + +  D G
Sbjct: 35  MEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNVRFSDEG 94

Query: 126 EYKCVATNKHGTDETNCVVIVE 147
            Y C   +    +E    + VE
Sbjct: 95  GYTCFFRDHSYQEEAAVELKVE 116

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.1 bits (90), Expect = 3e-05
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 2/81 (2%)

Query: 68  VMQVRQTCKLLCCLS-GKPPPTVKWYKGNRE-LSKRDYSMSYSDGVVSMEIIDCKPEDSG 125
           V    +     C L+  +   T+ WYK + +     + +         +  +  K EDSG
Sbjct: 13  VSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAKVEDSG 72

Query: 126 EYKCVATNKHGTDETNCVVIV 146
            Y CV  N             
Sbjct: 73  HYYCVVRNSSYCLRIKISAKF 93

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-05
 Identities = 10/63 (15%), Positives = 24/63 (38%), Gaps = 2/63 (3%)

Query: 84  KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV 143
                 ++ +  +   K       ++G   ++I +   +DSG Y     + +GT   N  
Sbjct: 34  GSTLVAEFKRKMKPFLKSGAFEILANG--DLKIKNLTRDDSGTYNVTVYSTNGTRILNKA 91

Query: 144 VIV 146
           + +
Sbjct: 92  LDL 94

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 3e-05
 Identities = 14/75 (18%), Positives = 25/75 (33%), Gaps = 2/75 (2%)

Query: 64  LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNREL-SKRDYSMSYSDGVVSMEIIDCKPE 122
           L    + V +T      LS  P    +W    + L +  D  +        + + +C+  
Sbjct: 8   LYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLG 66

Query: 123 DSGEYKCVATNKHGT 137
            +GE    A N    
Sbjct: 67  MTGEVSFQAANAKSA 81

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 5e-05
 Identities = 10/79 (12%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 61  TFLLRPRVMQVRQTCKLLCCLSG---KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEII 117
              L+P ++ V ++  + C +         T+  ++GN  L    +  +      +    
Sbjct: 6   ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATF 65

Query: 118 DCKP---EDSGEYKCVATN 133
           +      +    + C+A  
Sbjct: 66  NSTADREDGHRNFSCLAVL 84

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 6e-05
 Identities = 12/94 (12%), Positives = 24/94 (25%), Gaps = 5/94 (5%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLSGKPP---PTVKWYKGNRELSKRDYSMSYSDGVVSM 114
                   P    V +   L C + G  P    TV   +G +E   +          V+ 
Sbjct: 5   ERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE--LKREPAVGEPAEVTT 62

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES 148
            ++  +     ++ C                  +
Sbjct: 63  TVLVRRDHHGAQFSCRTELDLRPQGLELFENTSA 96

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 1e-04
 Identities = 14/80 (17%), Positives = 22/80 (27%), Gaps = 6/80 (7%)

Query: 66  PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG 125
               Q  +T  L C      P     +       +   S  +S    +  I       SG
Sbjct: 9   HLEFQEGETIVLRCHSWKDKPLVKVTFF------QNGKSKKFSRSDPNFSIPQANHSHSG 62

Query: 126 EYKCVATNKHGTDETNCVVI 145
           +Y C     +    +  V I
Sbjct: 63  DYHCTGNIGYTLYSSKPVTI 82

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 2e-04
 Identities = 14/89 (15%), Positives = 26/89 (29%), Gaps = 9/89 (10%)

Query: 58  PNFTFLLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEI 116
           P FT   +   +      +L C       P T+ W++G  ++                 +
Sbjct: 2   PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIG--------GPAPSPSVL 53

Query: 117 IDCKPEDSGEYKCVATNKHGTDETNCVVI 145
                  S  + C A N  G   +    +
Sbjct: 54  NVTGVTQSTMFSCEAHNLKGLASSRTATV 82

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.3 bits (82), Expect = 2e-04
 Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 68  VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEY 127
           + Q+  +  L C  +G   P   W            +   +   ++M        +   Y
Sbjct: 12  LAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTTSTLTMN--PVSFGNEHSY 69

Query: 128 KCVATNKHGTDETNCVVIVES 148
            C AT +    E    V + S
Sbjct: 70  LCTATCESRKLEKGIQVEIYS 90

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.2 bits (82), Expect = 3e-04
 Identities = 15/84 (17%), Positives = 29/84 (34%), Gaps = 9/84 (10%)

Query: 73  QTCKLLCCLSGKPPPTVKWYKGN---------RELSKRDYSMSYSDGVVSMEIIDCKPED 123
           ++ KL C  SG   P V+W                    Y+   +     +       +D
Sbjct: 17  ESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKD 76

Query: 124 SGEYKCVATNKHGTDETNCVVIVE 147
           +GEY C+ + + G +     + + 
Sbjct: 77  NGEYTCMVSEEGGQNYGEVSIHLT 100

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 4e-04
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 2/83 (2%)

Query: 64  LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPED 123
            R    +   T +L C            +     + K +       G  ++ I +    D
Sbjct: 4   YRQHFFKHGGTAELKCSQKSNLARVFWKF--QNGVLKAESPKYGLMGRKNLLIFNLSEGD 61

Query: 124 SGEYKCVATNKHGTDETNCVVIV 146
           SG Y+C++  +        VV  
Sbjct: 62  SGVYQCLSEERVKNKTVFQVVAK 84

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 6e-04
 Identities = 13/85 (15%), Positives = 20/85 (23%), Gaps = 8/85 (9%)

Query: 66  PRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDS 124
             V +      L C          V +        +      Y        I     +DS
Sbjct: 11  RWVFKEEDPIHLRCHSWKNTALHKVTYL-------QNGKDRKYFHHNSDFHIPKATLKDS 63

Query: 125 GEYKCVATNKHGTDETNCVVIVESE 149
           G Y C          +  V I  ++
Sbjct: 64  GSYFCRGLVGSKNVSSETVNITITQ 88

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (79), Expect = 9e-04
 Identities = 16/92 (17%), Positives = 27/92 (29%), Gaps = 11/92 (11%)

Query: 66  PRVMQVR--QTCKLLCCLSGKPPPTVKWYKGN---------RELSKRDYSMSYSDGVVSM 114
              +++      KL C  SG   P V+W                    Y    +     +
Sbjct: 11  EPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGI 70

Query: 115 EIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
                  ED+G Y C+ + + G       V +
Sbjct: 71  TFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL 102

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.001
 Identities = 9/44 (20%), Positives = 16/44 (36%)

Query: 103 YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV 146
            S     G  S+ + + +  D G Y+C      G       ++V
Sbjct: 79  TSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV 122

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 8/49 (16%), Positives = 12/49 (24%), Gaps = 2/49 (4%)

Query: 85  PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN 133
              TV W              +       + +   +  DSG Y C    
Sbjct: 35  DNATVHWVLRKPAAGSHPSRWAGMGRR--LLLRSVQLHDSGNYSCYRAG 81

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.84
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.83
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.83
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.82
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.81
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.8
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.8
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.76
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.75
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.73
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.73
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.71
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.71
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.69
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.69
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.69
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.68
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.68
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.67
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.67
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.66
d2avga1	110	Cardiac myosin binding protein C, different domain	99.66
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.65
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.65
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.65
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.65
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.64
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.64
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.63
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.61
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.6
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.6
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.6
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.59
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.58
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.57
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.56
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.56
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.55
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.55
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.54
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.54
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.52
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.52
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.51
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.51
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.5
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.49
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.48
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.46
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.44
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.43
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.33
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.29
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.12
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.1
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.98
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.78
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.76
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.71
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.71
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.71
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.66
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.64
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.62
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.61
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.61
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.6
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.6
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.6
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.59
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.58
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.57
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.55
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.55
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.55
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.55
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.55
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.54
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.53
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.53
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.52
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.51
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.5
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.49
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.48
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.48
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.47
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.46
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.46
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.45
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.45
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.42
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.41
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.41
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.41
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.4
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.4
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.39
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.39
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.38
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.36
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.34
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.33
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.33
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.32
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.32
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.32
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.32
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.31
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.3
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.3
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.29
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.29
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.28
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.27
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.26
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.25
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.24
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.24
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.22
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.21
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.18
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.16
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.16
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.15
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.15
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.15
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.14
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.14
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.14
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.13
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.13
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.12
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.12
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.11
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.1
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.09
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.08
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.04
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.01
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.98
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.96
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.95
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.93
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.92
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.9
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.89
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.89
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.88
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.84
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.84
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.83
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.83
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.82
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.82
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.81
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.68
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.68
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.68
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.65
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.64
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.56
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.56
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.51
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.45
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.43
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.38
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.34
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.33
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.33
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.33
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.31
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.31
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.3
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.29
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.29
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.29
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.28
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.27
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.26
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.25
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.25
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.25
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.23
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.23
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.23
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	97.22
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.22
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.22
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.21
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.2
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.17
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.15
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.15
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.14
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.14
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.12
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.12
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.1
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.09
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.09
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.08
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.06
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.06
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.05
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.04
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.02
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.02
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.99
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.99
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.99
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.98
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.98
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	96.98
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.98
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.97
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.97
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.96
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	96.96
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.95
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.94
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.94
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.92
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	96.92
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.9
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.89
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	96.88
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	96.88
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.87
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	96.86
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.79
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	96.79
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.75
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.75
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.71
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	96.7
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	96.67
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	96.63
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.62
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.61
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	96.51
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	96.48
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.44
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.4
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.26
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.23
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.16
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	96.08
d1i1ra1	100	Cytokine receptor gp130 cytokine-binding domains {	96.06
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	96.03
d1hnfa1	101	CD2, first domain {Human (Homo sapiens) [TaxId: 96	95.9
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	95.77
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	95.6
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	95.58
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	95.46
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	95.34
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	94.33
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	94.13
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	93.82
d1xiwb_	74	CD3 delta chain ectodomain fragment {Human (Homo s	92.88
d1xmwa2	66	CD3 epsilon chain ectodomain fragment {Sheep (Ovis	88.21
d2d9qb1	94	Granulocyte colony-stimulating factor (GC-SF) rece	82.69

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=3.7e-20  Score=112.37  Aligned_cols=97  Identities=16%  Similarity=0.351  Sum_probs=85.5

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      |.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+......+.|.|.++...|+|.|+|.|.|..|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   80 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLG   80 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEECSSEEEEEETTCCTTTCEEEEEEEECSSC
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEEecceeEEEEeeCCcccCEEEEEEEEECCC
Confidence            5677778889999999999999999999999999999998865 455666666777899999999999999999999999


Q ss_pred             ceEEEEEEEEeeCCCchh
Q psy12421        137 TDETNCVVIVESEEESKE  154 (168)
Q Consensus       137 ~~~~~~~l~v~~~p~~~~  154 (168)
                      ....++.|.|.+.|.+|.
T Consensus        81 ~~~~~~~l~V~~~P~pP~   98 (101)
T d2cqva1          81 SRQAQVNLTVVDKPDPPA   98 (101)
T ss_dssp             EEECCEEEEEECSCSCCC
T ss_pred             EEEEEEEEEEEecCCCcC
Confidence            999999999999887653

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.83  E-value=3.3e-20  Score=111.80  Aligned_cols=95  Identities=28%  Similarity=0.452  Sum_probs=83.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. .++.+...++...|.|.++...|+|.|+|.|.|..
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~   80 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNSY   80 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCCSTTEEEEEESCCCSGGGSCEEEEEEETT
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEecCCeeEEEeCCCceecCEEEEEEEEECC
Confidence            38898899999999999999999999999999999999999865 34444455667789999999999999999999999


Q ss_pred             cceEEEEEEEEeeCCC
Q psy12421        136 GTDETNCVVIVESEEE  151 (168)
Q Consensus       136 g~~~~~~~l~v~~~p~  151 (168)
                      |.....+.|.|...+.
T Consensus        81 G~~~~~~~l~V~~~~~   96 (97)
T d1koaa1          81 GTKEEIVFLNVTRHSE   96 (97)
T ss_dssp             EEEEEEECCEEECSCC
T ss_pred             CEEEEEEEEEEeecCC
Confidence            9999999998876543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.83  E-value=2.2e-19  Score=108.34  Aligned_cols=93  Identities=24%  Similarity=0.402  Sum_probs=81.8

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+++..+.+|+.+.|.|.+.|.|.|.+.|++++..+....  ......++.+.|.|.++...|.|.|+|.|.|
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N   82 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAIN   82 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEE
Confidence            36899999999999999999999999999999999999999987643  2333456677899999999999999999999


Q ss_pred             CCcceEEEEEEEEee
Q psy12421        134 KHGTDETNCVVIVES  148 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~  148 (168)
                      ..|...+.+.|.|..
T Consensus        83 ~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          83 IAGETSSHAFLLVQA   97 (98)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999998864

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.82  E-value=2.8e-19  Score=105.96  Aligned_cols=87  Identities=30%  Similarity=0.556  Sum_probs=77.2

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      |.|...+.+..+..|+++.|.|.+.|.|.|.+.|++++..+....... ..++  .|.|.++...|+|.|+|.|.|..|.
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~-~~~~--~L~i~~v~~~D~G~Y~C~a~N~~G~   78 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIE-VSGG--ELRFSKLVLEDSGMYQCVAENKHGT   78 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEE-EETT--EEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceee-eeee--eEEEEeecccCCEEEEEEEEeCCCE
Confidence            788889999999999999999999999999999999999987654332 2444  7999999999999999999999999


Q ss_pred             eEEEEEEEEe
Q psy12421        138 DETNCVVIVE  147 (168)
Q Consensus       138 ~~~~~~l~v~  147 (168)
                      ..+++.|.|.
T Consensus        79 ~~~~~~l~V~   88 (89)
T d1cs6a4          79 VYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9888888875

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.81  E-value=6.5e-19  Score=106.96  Aligned_cols=93  Identities=24%  Similarity=0.513  Sum_probs=81.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEe-cCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSY-SDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~-~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .+|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... ++.+.. ..+...|.|.++...|.|.|+|.|.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N   86 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVN   86 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEE
Confidence            4688988999999999999999999999999999999999998764 344433 44567899999999999999999999


Q ss_pred             CCcceEEEEEEEEee
Q psy12421        134 KHGTDETNCVVIVES  148 (168)
Q Consensus       134 ~~g~~~~~~~l~v~~  148 (168)
                      ..|...+++.|.|..
T Consensus        87 ~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          87 SLGEATCTAELLVET  101 (102)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCcEEEEEEEEEEEE
Confidence            999999999998864

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.80  E-value=2.1e-19  Score=107.40  Aligned_cols=91  Identities=26%  Similarity=0.344  Sum_probs=80.3

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +|.|...+++..+.+|+++.|.|.+.|.|.|.+.|++++..+.. .+...........|.|.++...|+|.|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~   81 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDAKSSTTSIFFPSAKRADSGNYKLKVKNEL   81 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEEETTEEEEECTTBCGGGCEEEEEEEEETT
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecccccceeeccccccccccEEEEEEEEECC
Confidence            58888888889999999999999999999999999999987754 44556666677789999999999999999999999


Q ss_pred             cceEEEEEEEEe
Q psy12421        136 GTDETNCVVIVE  147 (168)
Q Consensus       136 g~~~~~~~l~v~  147 (168)
                      |.....+.|.|+
T Consensus        82 G~~~~~~~l~V~   93 (93)
T d1wiua_          82 GEDEAIFEVIVQ   93 (93)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999999888773

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.80  E-value=1e-18  Score=103.50  Aligned_cols=87  Identities=30%  Similarity=0.499  Sum_probs=74.8

Q ss_pred             CCeEEeecCC-eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +|.|...+.. ..+.+|+.+.|.|.+.|.|.|.+.|++++..+...++.+  .++  .|.|.++...|+|.|+|.|.|..
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~~~~~--~~~--~L~i~~v~~~d~G~Y~C~a~N~~   77 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATV--TDS--GLVIKGVKNGDKGYYGCRATNEH   77 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSSSEEE--ETT--EEEESSCCSTTCEEEEEEEEETT
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccccEEE--eee--eEEECCCChhhCEEEEEEEEECC
Confidence            5788877655 567889999999999999999999999999997765443  334  69999999999999999999999


Q ss_pred             cceEEEEEEEEe
Q psy12421        136 GTDETNCVVIVE  147 (168)
Q Consensus       136 g~~~~~~~l~v~  147 (168)
                      |.....+.|.|.
T Consensus        78 G~~~~~~~l~V~   89 (89)
T d1biha4          78 GDKYFETLVQVN   89 (89)
T ss_dssp             EEEEEEEEEEEC
T ss_pred             CEEEEEEEEEEC
Confidence            999888888763

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.76  E-value=4.4e-18  Score=101.09  Aligned_cols=87  Identities=26%  Similarity=0.387  Sum_probs=71.4

Q ss_pred             CCCeEEee-cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         56 SAPNFTFL-LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        56 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+|.|... +.+..+.+|+.+.|.|.+.|.|.|.+.|++++.......   ...++  .|.|.++...|+|.|+|.|.|.
T Consensus         3 ~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~---~~~~~--~L~I~~v~~~D~G~Y~C~a~N~   77 (91)
T d1cs6a3           3 YAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW---LSSEP--LLHIQNVDFEDEGTYECEAENI   77 (91)
T ss_dssp             EEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC---SBSSS--EEEECSCCGGGCEEEEEEEEET
T ss_pred             cCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe---eeeee--EEEeCCCCccCCEEEEEEEEEC
Confidence            46777654 567889999999999999999999999999765443211   12334  7999999999999999999999


Q ss_pred             CcceEEEEEEEEe
Q psy12421        135 HGTDETNCVVIVE  147 (168)
Q Consensus       135 ~g~~~~~~~l~v~  147 (168)
                      .|.....+.|.|.
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1cs6a3          78 KGRDTYQGRIIIH   90 (91)
T ss_dssp             TEEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEEE
Confidence            9999888888875

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=7.3e-19  Score=104.54  Aligned_cols=87  Identities=22%  Similarity=0.409  Sum_probs=74.9

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE  139 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  139 (168)
                      ...|++..+.+|+.+.|.|.+.|.|.|.+.|++++..+.. ..+.+........|.|.++...|+|.|+|.|.|..|...
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~   82 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEGKQE   82 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEECSSEEEEECSSCCSCCCEEEEEECBCSSCBCC
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeeeecceeEEeecCCCHHHCEEEEEEEEECCCEEE
Confidence            3456778899999999999999999999999999988765 344555566677899999999999999999999999998


Q ss_pred             EEEEEEEe
Q psy12421        140 TNCVVIVE  147 (168)
Q Consensus       140 ~~~~l~v~  147 (168)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1tnna_          83 AEFTLTIQ   90 (91)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEEE
Confidence            88888774

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.75  E-value=1.8e-17  Score=100.02  Aligned_cols=92  Identities=25%  Similarity=0.448  Sum_probs=72.9

Q ss_pred             CCeEEeecCC--eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         57 APNFTFLLRP--RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        57 ~p~~~~~~~~--~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ||.|......  ..+..|+++.|.|.+.|.|.|.+.|++++..+...   ............|.|.++...|+|.|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a   82 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIA   82 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEE
Confidence            5666654443  34567999999999999999999999999988542   122223333448999999999999999999


Q ss_pred             EeCCcceEEEEEEEEee
Q psy12421        132 TNKHGTDETNCVVIVES  148 (168)
Q Consensus       132 ~n~~g~~~~~~~l~v~~  148 (168)
                      .|..|.....+.|.|..
T Consensus        83 ~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          83 ENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EETTEEEEEEEEEEEEC
T ss_pred             EECCCEEEEEEEEEEEE
Confidence            99999999999888864

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.73  E-value=8.1e-18  Score=101.09  Aligned_cols=80  Identities=25%  Similarity=0.475  Sum_probs=65.7

Q ss_pred             eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      ..+..|+++.|.|.+.|.|.|.+.|++++..+....  .......+..+|.|.++...|+|.|+|.|.|..|....++.|
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   94 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   94 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            467789999999999999999999999999886421  111112222379999999999999999999999999988888


Q ss_pred             EE
Q psy12421        145 IV  146 (168)
Q Consensus       145 ~v  146 (168)
                      .|
T Consensus        95 ~V   96 (97)
T d3dara1          95 DV   96 (97)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=4.8e-17  Score=98.29  Aligned_cols=92  Identities=23%  Similarity=0.423  Sum_probs=75.7

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEEC----C---CCCeEEEecCCEEEEEEccCC-CCCCeE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNREL----S---KRDYSMSYSDGVVSMEIIDCK-PEDSGE  126 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~----~---~~~~~~~~~~~~~~l~i~~~~-~~d~G~  126 (168)
                      .||.|...+.+..+.+|+.+.|.|.+.|.|.| .+.|++++...    .   ..++.+........|.|.++. ..|+|.
T Consensus         1 GPP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~~D~G~   80 (101)
T d3b5ha1           1 GPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQ   80 (101)
T ss_dssp             CSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEETTEEEEEECSCCTTTSSEE
T ss_pred             CCceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCCCEEEEEEeccccccCCEE
Confidence            47888888888899999999999999999988 79999875322    1   123555556677789999998 579999


Q ss_pred             EEEEEEeCCcceEEEEEEEEe
Q psy12421        127 YKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus       127 Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      |.|.|.|.+|.....+.|.|.
T Consensus        81 Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          81 YRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             EEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999888873

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=8.1e-17  Score=94.23  Aligned_cols=81  Identities=21%  Similarity=0.379  Sum_probs=66.1

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      |.|...+.+..+.+|+.+.|.|.+.|.|.| .+.|+|++..+....     . +  .+.|......|+|.|+|.|.|..|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~-----~-~--~~~l~~~~~~d~G~Y~C~A~N~~G   73 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPA-----P-S--PSVLNVTGVTQSTMFSCEAHNLKG   73 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSE-----E-S--SEEEEECCCSSCEEEEEEEEETTE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCC-----C-c--ceEEecCCccccEEEEEEEEcCCC
Confidence            788889999999999999999999999988 899999999886532     1 1  244556667899999999999999


Q ss_pred             ceE-EEEEEEE
Q psy12421        137 TDE-TNCVVIV  146 (168)
Q Consensus       137 ~~~-~~~~l~v  146 (168)
                      ... ..+.|.|
T Consensus        74 ~~~S~~~~v~V   84 (85)
T d1rhfa2          74 LASSRTATVHL   84 (85)
T ss_dssp             EEECCCEEEEE
T ss_pred             cEEEEEEEEEE
Confidence            653 3566665

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.71  E-value=2.1e-17  Score=98.33  Aligned_cols=88  Identities=19%  Similarity=0.320  Sum_probs=72.4

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-C-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-D-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+... . ......++  .|.|.++...|+|.|+|.|.|..
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~--~L~I~~~~~~D~G~Y~C~a~n~~   79 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNN--YLQIRGIKKTDEGTYRCEGRILA   79 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEECTTS--CEEETTCCGGGCEEEEEEEEEGG
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeeeeeee--eEEECCCCHHhCEEEEEEEEECc
Confidence            56777888999999999999999999999999999999988642 2 22233334  69999999999999999999998


Q ss_pred             cceEEEEEEEEe
Q psy12421        136 GTDETNCVVIVE  147 (168)
Q Consensus       136 g~~~~~~~l~v~  147 (168)
                      |.......|.|.
T Consensus        80 ~~~~~~~~i~Vi   91 (92)
T d1epfa2          80 RGEINFKDIQVI   91 (92)
T ss_dssp             GTEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence            877666666653

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=4.9e-17  Score=102.29  Aligned_cols=94  Identities=23%  Similarity=0.344  Sum_probs=73.8

Q ss_pred             cCCCeEEe-----ecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-----------------------------
Q psy12421         55 ESAPNFTF-----LLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-----------------------------  100 (168)
Q Consensus        55 ~~~p~~~~-----~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-----------------------------  100 (168)
                      +.||++..     .+....+.+|+.++|.|.+.|.|.|.+.|++++..+..                             
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCET   81 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSC
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeecc
Confidence            34666532     33457888999999999999999999999997654421                             


Q ss_pred             -CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEEee
Q psy12421        101 -RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIVES  148 (168)
Q Consensus       101 -~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~  148 (168)
                       .++.+........|.|.++..+|+|.|+|.|.|.+|.....+.|.|.+
T Consensus        82 ~~r~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~d  130 (130)
T d1gxea_          82 EGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVID  130 (130)
T ss_dssp             SSSCEEEEETTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEECC
T ss_pred             CceEEEEECCCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEEC
Confidence             112334455666899999999999999999999999999999988753

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=2.7e-16  Score=93.02  Aligned_cols=84  Identities=14%  Similarity=0.195  Sum_probs=68.1

Q ss_pred             eecCC-eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE
Q psy12421         62 FLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET  140 (168)
Q Consensus        62 ~~~~~-~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  140 (168)
                      ..|.. ..+.+|+.+.|.|.+.|.|.|.+.|++++..+....  .........|.|.++...|+|.|+|.|.|..|....
T Consensus         5 i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~   82 (90)
T d1vcaa2           5 TTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGK--VTNEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (90)
T ss_dssp             EESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSE--EEEETTEEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             EECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeee--eeeecCCcEEEEecccccccceEEEEEEeCCCEEEE
Confidence            34443 456789999999999999999999999876554332  223445558999999999999999999999999999


Q ss_pred             EEEEEEe
Q psy12421        141 NCVVIVE  147 (168)
Q Consensus       141 ~~~l~v~  147 (168)
                      ++.|.|.
T Consensus        83 ~~~v~V~   89 (90)
T d1vcaa2          83 GIQVEIY   89 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9988875

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.69  E-value=1.9e-16  Score=96.83  Aligned_cols=92  Identities=18%  Similarity=0.279  Sum_probs=69.7

Q ss_pred             CCCeEEee-cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-----CC--e-----E-E-EecCCEEEEEEccCC
Q psy12421         56 SAPNFTFL-LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-----RD--Y-----S-M-SYSDGVVSMEIIDCK  120 (168)
Q Consensus        56 ~~p~~~~~-~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-----~~--~-----~-~-~~~~~~~~l~i~~~~  120 (168)
                      .+|.|... +.+..+.+|+++.|.|.+.|.|.|.+.|++++.....     ..  .     . . ........|.|.++.
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            45777654 5789999999999999999999999999987643211     00  0     0 0 111223469999999


Q ss_pred             CCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421        121 PEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      ..|+|.|+|.|.|..|...+++.|.|.
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~Vl  109 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTVL  109 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999999999998873

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=9.5e-18  Score=99.81  Aligned_cols=89  Identities=18%  Similarity=0.231  Sum_probs=74.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCe-EEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSG-EYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G-~Y~C~a~n~~  135 (168)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+.... ..........|.|.++...|.| .|+|.|.|..
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~-~~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~   80 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV-MKSGGLPSLGLTLANVTSDLNRKNVTCWAENDV   80 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE-CCCCCSSEEEEEEESCCSTTTTCCEEECCEETT
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeee-eeeeeccceeEEEccccccccceEEEEEEEcCC
Confidence            5888888999999999999999999999999999999987664321 1122344557999999999999 6999999999


Q ss_pred             cceEEEEEEEE
Q psy12421        136 GTDETNCVVIV  146 (168)
Q Consensus       136 g~~~~~~~l~v  146 (168)
                      |....++.|.|
T Consensus        81 G~~~~s~~l~V   91 (92)
T d2ifga1          81 GRAEVSVQVNV   91 (92)
T ss_dssp             EECCEEECCCC
T ss_pred             CEEEEEEEEEE
Confidence            99988887765

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.1e-16  Score=92.51  Aligned_cols=81  Identities=19%  Similarity=0.360  Sum_probs=67.8

Q ss_pred             ecCCeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN  141 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  141 (168)
                      .+....+.+|+++.|.|.+. +.|.|.+.|++++..+......  ..++  .|.|.++...|+|.|+|.|.|..|.....
T Consensus         8 ~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~--~~~~--~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~   83 (89)
T d1gl4b_           8 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM--DFNG--ILTIRNVQPSDAGTYVCTGSNMFAMDQGT   83 (89)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE--EETT--EEEECSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE--eece--EEEEecCCcccCEEEEEEEEECCCEEEEE
Confidence            45567888999999999987 6788999999998877655432  2344  79999999999999999999999999888


Q ss_pred             EEEEEe
Q psy12421        142 CVVIVE  147 (168)
Q Consensus       142 ~~l~v~  147 (168)
                      +.|.|+
T Consensus        84 ~~l~V~   89 (89)
T d1gl4b_          84 ATLHVQ   89 (89)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            888773

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=4.6e-16  Score=93.24  Aligned_cols=83  Identities=14%  Similarity=0.312  Sum_probs=66.9

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEE--ecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE-
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-  139 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-  139 (168)
                      +.+..+.+|+++.|.|.+.|.|.|.+.|++++..+... ...+.  ......+|.|.++...|+|.|+|.|.|.+|... 
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s   89 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQK   89 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEE
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEE
Confidence            46788999999999999999999999999999988542 22221  122233799999999999999999999999864 


Q ss_pred             EEEEEEE
Q psy12421        140 TNCVVIV  146 (168)
Q Consensus       140 ~~~~l~v  146 (168)
                      .++.|.|
T Consensus        90 ~s~~L~V   96 (97)
T d1biha3          90 HSLKLTV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4677776

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.67  E-value=5.3e-17  Score=96.86  Aligned_cols=83  Identities=16%  Similarity=0.303  Sum_probs=67.6

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.| .+.|+++|..+..............+|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~   81 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGSLVFLRPQASDEGHYQCFAETPA   81 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEECTTSCCEEESSCCGGGCEEEEEEEEETT
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeecccceEEEEeccChhcCeEEEEEEEeCC
Confidence            5788888888999999999999999999866 799999999886533222222222379999999999999999999999


Q ss_pred             cceE
Q psy12421        136 GTDE  139 (168)
Q Consensus       136 g~~~  139 (168)
                      |...
T Consensus        82 G~~~   85 (94)
T d1biha1          82 GVAS   85 (94)
T ss_dssp             EEEE
T ss_pred             CEEE
Confidence            9754

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=7.8e-17  Score=96.67  Aligned_cols=88  Identities=26%  Similarity=0.396  Sum_probs=69.5

Q ss_pred             CCCeEEeecCCeEEecC---CcEEEEEEEeccCCCeeEEEeCCEECCCC-CeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVR---QTCKLLCCLSGKPPPTVKWYKGNRELSKR-DYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g---~~~~l~C~~~g~p~p~i~W~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      .+|.|...+.+..+.+|   +++.|.|.+.|.|.|.+.|++++..+... ........+ ..|.|..+...|+|.|+|.|
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~a   81 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAG-DLVISNPVKAKDAGSYQCVA   81 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEEETT-EEEEESCCHHHHCEEEEEEE
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEEeeee-eEEEEecccccCCEEEEEEE
Confidence            46889888888888776   68999999999999999999999988642 222333333 26788888899999999999


Q ss_pred             EeCCcceE-EEEEE
Q psy12421        132 TNKHGTDE-TNCVV  144 (168)
Q Consensus       132 ~n~~g~~~-~~~~l  144 (168)
                      .|..|... ..+.|
T Consensus        82 ~N~~G~~~S~~a~L   95 (97)
T d1cs6a1          82 TNARGTVVSREASL   95 (97)
T ss_dssp             EETTEEEECCCEEE
T ss_pred             EECCCEEEEEEEEE
Confidence            99999753 34544

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-16  Score=92.03  Aligned_cols=76  Identities=13%  Similarity=0.145  Sum_probs=64.4

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      +..+.+|++++|.|.+.|.|.|.+.|++++..+       .....  .|.|.++...|+|.|+|.|.|..|.....+.|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~-------~~~~~--~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~v~   78 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-------IQGGK--TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIV   78 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCE-------EEESS--EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccc-------eeeee--eeeeeecccccccEEEEEEEeCCCEEEEEEEEE
Confidence            456789999999999999999999999876422       12333  689999999999999999999999999999888


Q ss_pred             EeeCC
Q psy12421        146 VESEE  150 (168)
Q Consensus       146 v~~~p  150 (168)
                      |...|
T Consensus        79 V~~~~   83 (84)
T d2nxyb2          79 VLAFQ   83 (84)
T ss_dssp             EECCC
T ss_pred             EEecC
Confidence            87654

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=6.2e-16  Score=94.75  Aligned_cols=92  Identities=22%  Similarity=0.380  Sum_probs=72.7

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccC---CCeeEEEeCCEECCC----CCeEEEe----c--CCEEEEEEccCCCCCC
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKP---PPTVKWYKGNRELSK----RDYSMSY----S--DGVVSMEIIDCKPEDS  124 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~~~~~~----~~~~~~~----~--~~~~~l~i~~~~~~d~  124 (168)
                      |.|...+.+..+..|+++.|.|.+.|.|   .|.+.|++++.....    .+.....    .  .....|.|.+++..|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            5677788899999999999999999998   578999998753321    1111111    1  1234699999999999


Q ss_pred             eEEEEEEEeCCcceEEEEEEEEeeC
Q psy12421        125 GEYKCVATNKHGTDETNCVVIVESE  149 (168)
Q Consensus       125 G~Y~C~a~n~~g~~~~~~~l~v~~~  149 (168)
                      |.|+|.|.|..|...+++.|.|.++
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~~~  109 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVHEA  109 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEESC
T ss_pred             cEEEEEEEECCCeEEEEEEEEEEec
Confidence            9999999999999999999999753

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.2e-16  Score=91.54  Aligned_cols=84  Identities=20%  Similarity=0.341  Sum_probs=67.4

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCe-EEEecC--CEEEEEEccCCCCCCeEEEEEEEeCCcce-E
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDY-SMSYSD--GVVSMEIIDCKPEDSGEYKCVATNKHGTD-E  139 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~-~~~~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~  139 (168)
                      |.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+..... .+....  ....|.|.++...|+|.|+|.|.|..|.. +
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S   82 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEIS   82 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEEC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEE
Confidence            4567888999999999999999999999999999865432 222222  23468999999999999999999999975 4


Q ss_pred             EEEEEEEe
Q psy12421        140 TNCVVIVE  147 (168)
Q Consensus       140 ~~~~l~v~  147 (168)
                      ..+.|.|.
T Consensus        83 ~~~~l~V~   90 (91)
T d1rhfa1          83 QPVWLTVE   90 (91)
T ss_dssp             CCEEEEEE
T ss_pred             EEEEEEEE
Confidence            56777764

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=6.6e-16  Score=93.87  Aligned_cols=82  Identities=18%  Similarity=0.262  Sum_probs=65.3

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eEEE--ecC--CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMS--YSD--GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~--~~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +....+.|.+.|.|.|.+.|++++..+.... ....  ...  ....|.|.++...|+|.|+|.|.|..|....++.|.|
T Consensus        17 ~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~V   96 (105)
T d1wwca_          17 RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   96 (105)
T ss_dssp             CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEEE
Confidence            4445688899999999999999999986543 2211  111  1346999999999999999999999999999999999


Q ss_pred             eeCCCch
Q psy12421        147 ESEEESK  153 (168)
Q Consensus       147 ~~~p~~~  153 (168)
                      .+.|.+.
T Consensus        97 ~~~P~P~  103 (105)
T d1wwca_          97 LKEPFPV  103 (105)
T ss_dssp             SCCCCCS
T ss_pred             EeCCCCC
Confidence            8877553

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1e-15  Score=90.39  Aligned_cols=85  Identities=15%  Similarity=0.226  Sum_probs=67.0

Q ss_pred             CeEEeecC-CeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         58 PNFTFLLR-PRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        58 p~~~~~~~-~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      |.+...+. ...+.+|+++.|.|.+. |.|.|.+.|++.+..+..    .........|.|.+++.+|+|.|+|.|.|..
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~   78 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA----VQSDTGRSVLTVRNASLSAAGTRVCVGSCGG   78 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC----EEEESSEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee----eeccCceeeEEcCccChhhCCcEEEEEEeCC
Confidence            33333443 46788999999999875 789999999987765532    1223445589999999999999999999999


Q ss_pred             cceEEEEEEEE
Q psy12421        136 GTDETNCVVIV  146 (168)
Q Consensus       136 g~~~~~~~l~v  146 (168)
                      |..+.++.|.|
T Consensus        79 g~~~~s~~l~V   89 (90)
T d1gsma1          79 RTFQHTVQLLV   89 (90)
T ss_dssp             EEEEEEEEEEE
T ss_pred             CcEEEEEEEEE
Confidence            99998888876

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=1.6e-17  Score=97.04  Aligned_cols=73  Identities=21%  Similarity=0.203  Sum_probs=61.0

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      +.+..+.+|+.+.|.|.+.|.|.|.+.|++++..+...            +.+..++..|+|.|.|.|.|..|..+..+.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~------------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~   78 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPI------------GESVTVTRDLEGTYLCRARSTQGEVTREVT   78 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCT------------TSCEECCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceee------------eeeeccccCCCCEEEEEEEcCCCEEEEEEE
Confidence            34578889999999999999999999999988655431            123457789999999999999999998988


Q ss_pred             EEEee
Q psy12421        144 VIVES  148 (168)
Q Consensus       144 l~v~~  148 (168)
                      |.|..
T Consensus        79 l~V~~   83 (84)
T d2oz4a3          79 VNVLS   83 (84)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88865

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=9.4e-16  Score=92.86  Aligned_cols=81  Identities=15%  Similarity=0.271  Sum_probs=66.2

Q ss_pred             cCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eEEEe---cC--CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEE
Q psy12421         71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSY---SD--GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVV  144 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~---~~--~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  144 (168)
                      .+....+.|.+.|.|.|.+.|++++..+.... .....   ..  ....|.|.+++..|+|.|+|.|.|..|.....+.|
T Consensus        15 ~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (103)
T d1wwbx_          15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISA   94 (103)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             cceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEEEE
Confidence            56677899999999999999999999987543 22111   11  23469999999999999999999999999999999


Q ss_pred             EEeeCCC
Q psy12421        145 IVESEEE  151 (168)
Q Consensus       145 ~v~~~p~  151 (168)
                      .|.+.|.
T Consensus        95 ~V~~~P~  101 (103)
T d1wwbx_          95 HFMGWPG  101 (103)
T ss_dssp             CCSCCCC
T ss_pred             EEEeCCC
Confidence            9887765

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2e-16  Score=97.44  Aligned_cols=93  Identities=20%  Similarity=0.323  Sum_probs=71.6

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC---CCeeEEEeCCEECC----CCCeEEEe----c--CCEEEEEEccCCCCCCeE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP---PPTVKWYKGNRELS----KRDYSMSY----S--DGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~~~~~----~~~~~~~~----~--~~~~~l~i~~~~~~d~G~  126 (168)
                      |...+++..+.+|+++.|.|.+.|.|   .|.+.|+|++....    ........    .  .....|.|.++...|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            44567788999999999999999988   58999999864321    11111111    1  123469999999999999


Q ss_pred             EEEEEEeCCcceEEEEEEEEeeCCCc
Q psy12421        127 YKCVATNKHGTDETNCVVIVESEEES  152 (168)
Q Consensus       127 Y~C~a~n~~g~~~~~~~l~v~~~p~~  152 (168)
                      |+|.|.|..|...+.+.|.|.+++..
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~~~  108 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHESTGT  108 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCCCS
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCCCc
Confidence            99999999999999999999866543

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.63  E-value=9.6e-15  Score=87.33  Aligned_cols=88  Identities=24%  Similarity=0.460  Sum_probs=67.3

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCC-CeeEEEeC-CEECCC--CCeEEE-ecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKG-NRELSK--RDYSMS-YSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~-~~~~~~--~~~~~~-~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +...|....+.+|+++.|.|.+.|.|. |.+.|+++ +..+..  .++... ...+...|.|.++...|+|.|+|.|.|.
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~   82 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   82 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeC
Confidence            445667788999999999999999985 79999984 444433  233332 3455668999999999999999999999


Q ss_pred             Ccce-EEEEEEEEe
Q psy12421        135 HGTD-ETNCVVIVE  147 (168)
Q Consensus       135 ~g~~-~~~~~l~v~  147 (168)
                      .|.. ..++.|.|.
T Consensus        83 ~G~~~~~tv~l~V~   96 (97)
T d1epfa1          83 DGTQSEATVNVKIF   96 (97)
T ss_dssp             TTEEEEEEEEEEEE
T ss_pred             CCcEEEEEEEEEEE
Confidence            9974 456677663

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2e-15  Score=90.15  Aligned_cols=90  Identities=14%  Similarity=0.337  Sum_probs=66.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEe--CCE-ECCCCCeE-EEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYK--GNR-ELSKRDYS-MSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~--~~~-~~~~~~~~-~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      +|.|. .+++..+.+|+++.|.|.+.|.|.|.+.|++  ++. ........ +.......+|.|.++..+|+|.|+|.|.
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   80 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIR   80 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEEEETTEEEEEEEECSCCGGGCSEEEEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeEEEeecCceEEEECCCCHHHCeEEEEEEE
Confidence            68886 5889999999999999999999988766543  222 22222222 2222223469999999999999999999


Q ss_pred             eCCcceEE-EEEEEEe
Q psy12421        133 NKHGTDET-NCVVIVE  147 (168)
Q Consensus       133 n~~g~~~~-~~~l~v~  147 (168)
                      |..|.... .+.|.|+
T Consensus        81 N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          81 TEGGVGISNYAELVVK   96 (96)
T ss_dssp             ETTEEEEEEEEEEEEC
T ss_pred             eCCCeEEEEEEEEEEC
Confidence            99998654 4677763

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=4.8e-15  Score=88.51  Aligned_cols=89  Identities=17%  Similarity=0.322  Sum_probs=70.6

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +|.+  ...+..+.+|+++.|.|.+.+ +.+.+.|++++..+.... ..+....+  .|.|.++...|.|.|+|.|.|..
T Consensus         5 ~P~i--~~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~~~~~--~L~I~~v~~~d~G~Y~C~a~N~~   79 (96)
T d1l6za2           5 QPFL--QVTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLSQNNS--ILRIDPIKREDAGEYQCEISNPV   79 (96)
T ss_dssp             CCCE--ECSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEETTTT--EEEECSCCGGGCEEEEEEEESSS
T ss_pred             CCeE--EcCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceeccCCce--EEEEeccchhhceEEEEEEEeCC
Confidence            3554  345678899999999999866 668999999999987643 33333334  79999999999999999999999


Q ss_pred             cceE-EEEEEEEeeCC
Q psy12421        136 GTDE-TNCVVIVESEE  150 (168)
Q Consensus       136 g~~~-~~~~l~v~~~p  150 (168)
                      |... ..+.|.|...|
T Consensus        80 g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          80 SVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             CCEECCCCEEEECCSC
T ss_pred             CCeEEEeEEEEEEcCC
Confidence            9875 46788888766

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.6e-15  Score=92.01  Aligned_cols=91  Identities=18%  Similarity=0.217  Sum_probs=67.6

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccC-CCeeEEEeCCEECCC---CCe-EEEec--CCEEEEEEccCCCCCCeEEEEE
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGNRELSK---RDY-SMSYS--DGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~~~~~---~~~-~~~~~--~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +.|...+....+.+|+++.|.|.+.|.| .|.+.|+|++..+..   ... .....  .+...|.|.++..+|+|.|.|.
T Consensus         4 ~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   83 (104)
T d2aw2a1           4 QLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCS   83 (104)
T ss_dssp             EECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEE
T ss_pred             cEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEE
Confidence            3444556667899999999999999998 589999998765421   111 11211  1234699999999999999999


Q ss_pred             EEeCCcceE-EEEEEEEee
Q psy12421        131 ATNKHGTDE-TNCVVIVES  148 (168)
Q Consensus       131 a~n~~g~~~-~~~~l~v~~  148 (168)
                      |.|..|... .+..|.|.+
T Consensus        84 A~N~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          84 ANFQSNLIESHSTTLYVTD  102 (104)
T ss_dssp             EEETTEEEECCCEEEEEEC
T ss_pred             EEcCCCeEEEEEEEEEEEE
Confidence            999999854 467777754

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.9e-16  Score=92.32  Aligned_cols=81  Identities=14%  Similarity=0.162  Sum_probs=66.8

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEeccCC-CeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP-PTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~-p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ..+|.|...+....+.+|+++.|.|.+.|.|+ +.+.|+|++..+..........++  +|.|.++..+|+|.|+|.|.|
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n   81 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGR--RLLLRSVQLHDSGNYSCYRAG   81 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEESS--EEEECSCCGGGCEEEEEESSS
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecCCC--EEEECCCChhcCEEEEEEECC
Confidence            35678877777888999999999999988765 589999999888776655555555  799999999999999999987


Q ss_pred             CCcc
Q psy12421        134 KHGT  137 (168)
Q Consensus       134 ~~g~  137 (168)
                      ..+.
T Consensus        82 ~~~~   85 (93)
T d1n26a1          82 RPAG   85 (93)
T ss_dssp             SCSC
T ss_pred             cccc
Confidence            6533

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.1e-14  Score=86.66  Aligned_cols=87  Identities=21%  Similarity=0.403  Sum_probs=68.7

Q ss_pred             CCCeEEeecCC-eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC--CCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         56 SAPNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK--RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        56 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~--~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .+|.|...+.+ ..+.+|+.+.|.|.+. .|.|.+.|++++..+..  ..+.+...++.+.|.|.++...|+|.|+|.|.
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~   82 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAAYQCVVG   82 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEEETTEEEEEECSCSSSSCEEEEEEET
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeeccCCeEEeecCCCCceecEEEEEEEe
Confidence            45667666665 4688999999999984 59999999999998754  34556666777889999999999999999985


Q ss_pred             eCCcceEEEEEEEEe
Q psy12421        133 NKHGTDETNCVVIVE  147 (168)
Q Consensus       133 n~~g~~~~~~~l~v~  147 (168)
                      |    ...++.|.|.
T Consensus        83 n----~~~s~~l~V~   93 (94)
T d1pd6a_          83 G----EKCSTELFVK   93 (94)
T ss_dssp             T----EEECCEEEEE
T ss_pred             e----EEEEEEEEEE
Confidence            5    4555666664

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=8.7e-15  Score=86.35  Aligned_cols=83  Identities=19%  Similarity=0.322  Sum_probs=66.8

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCC---CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR---DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~---~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      ...+++..+.+|+++.|.|.+ +.|.|.+.|++++..+...   .+.+...++.+.|.|.++...|+|.|+|.|.|    
T Consensus         4 ~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n----   78 (90)
T d1x44a1           4 TKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTG----   78 (90)
T ss_dssp             SBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETT----
T ss_pred             EcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEec----
Confidence            356778899999999999998 5688999999999987542   34555566777899999999999999999866    


Q ss_pred             eEEEEEEEEee
Q psy12421        138 DETNCVVIVES  148 (168)
Q Consensus       138 ~~~~~~l~v~~  148 (168)
                      ...++.|.|..
T Consensus        79 ~~~~a~l~V~~   89 (90)
T d1x44a1          79 GQSSAKLSVDL   89 (90)
T ss_dssp             EEEEEEEEEEC
T ss_pred             ceEEEEEEEEE
Confidence            45566776653

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.57  E-value=5.2e-15  Score=90.47  Aligned_cols=84  Identities=24%  Similarity=0.366  Sum_probs=62.3

Q ss_pred             CeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCCCCe---------EEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         66 PRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSKRDY---------SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~~---------~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ...+.+|+++.|.|.+. |.|.+.+.|++++..+.....         ..........|.|.+++..|+|.|+|.|.|..
T Consensus        11 ~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          11 PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            34678999999999975 899999999999987743211         11112222268999999999999999999999


Q ss_pred             cceEE--EEEEEEeeC
Q psy12421        136 GTDET--NCVVIVESE  149 (168)
Q Consensus       136 g~~~~--~~~l~v~~~  149 (168)
                      |....  .+.|.|.+.
T Consensus        91 G~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          91 GTAMRSEAAHMDAVEL  106 (110)
T ss_dssp             SCCEECCCEEEEEESS
T ss_pred             CcEEEEEEEEEEEEec
Confidence            98765  455666543

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.56  E-value=1.2e-14  Score=85.40  Aligned_cols=80  Identities=19%  Similarity=0.235  Sum_probs=62.1

Q ss_pred             ecCCeEEecCCcEEEEEEEec-cCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE-E
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-T  140 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-~  140 (168)
                      .+....+.+|+++.|.|.+.+ .|.+.+.|||++..+...     ..++  .|.|.++..+|+|.|.|.|.|..|... .
T Consensus         6 q~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~-----~~~~--~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~   78 (88)
T d2fcba2           6 QTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS-----RSDP--NFSIPQANHSHSGDYHCTGNIGYTLYSSK   78 (88)
T ss_dssp             ECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE-----SSCC--EEEETTCCGGGCEEEEEEEEETTEEEECC
T ss_pred             eCCCCeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc-----cccc--ccccCccCHHHCCeEEEEEEeCCCCEEee
Confidence            334566889999999999975 466789999999765421     1233  799999999999999999999998754 4


Q ss_pred             EEEEEEeeC
Q psy12421        141 NCVVIVESE  149 (168)
Q Consensus       141 ~~~l~v~~~  149 (168)
                      .+.|.|..+
T Consensus        79 ~v~l~V~~P   87 (88)
T d2fcba2          79 PVTITVQAP   87 (88)
T ss_dssp             CEEEEECCC
T ss_pred             eEEEEEeCC
Confidence            667777654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=3.3e-14  Score=83.61  Aligned_cols=81  Identities=20%  Similarity=0.169  Sum_probs=64.3

Q ss_pred             ecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce-EE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD-ET  140 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~-~~  140 (168)
                      .+....+.+|+.+.|.|.+.+. |.+.+.|||+|..+....     ...  .|.|.+++.+|+|.|.|.|.|..|.. +.
T Consensus         6 q~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~-----~~~--~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~   78 (89)
T d1f2qa2           6 QASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-----ENH--NISITNATVEDSGTYYCTGKVWQLDYESE   78 (89)
T ss_dssp             EESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-----CSS--EEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             eCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc-----ccc--eEEEeeeeeecCcEEEEEEEeCCCCeEee
Confidence            4445677899999999999765 556899999999875422     222  68999999999999999999998865 34


Q ss_pred             EEEEEEeeCC
Q psy12421        141 NCVVIVESEE  150 (168)
Q Consensus       141 ~~~l~v~~~p  150 (168)
                      .+.|.|.++|
T Consensus        79 ~v~i~V~~~P   88 (89)
T d1f2qa2          79 PLNITVIKAP   88 (89)
T ss_dssp             CEEEEEECSC
T ss_pred             eEEEEEEeCC
Confidence            6678888776

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=1.8e-14  Score=87.72  Aligned_cols=77  Identities=13%  Similarity=0.285  Sum_probs=61.2

Q ss_pred             EEEEEEEeccCCCeeEEEeCCEECCCCC-eEEEecC-------CEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         75 CKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSD-------GVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        75 ~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~-------~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      ..+.|.+.|.|.|.+.|++++..+.... .......       ....|.|.++...|+|.|+|.|.|.+|.....+.|.|
T Consensus        18 ~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G~~~~~i~v~v   97 (107)
T d1he7a_          18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAF   97 (107)
T ss_dssp             EEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             EEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCCEEEEEEEEEE
Confidence            3455689999999999999999986533 2211111       1346999999999999999999999999999999999


Q ss_pred             eeCCC
Q psy12421        147 ESEEE  151 (168)
Q Consensus       147 ~~~p~  151 (168)
                      .++|.
T Consensus        98 ~~~P~  102 (107)
T d1he7a_          98 MDNPF  102 (107)
T ss_dssp             CSCTT
T ss_pred             EcCCC
Confidence            88774

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.8e-14  Score=86.74  Aligned_cols=88  Identities=16%  Similarity=0.288  Sum_probs=66.7

Q ss_pred             CeEEeecCC-eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC--eEE----EecC-------CEEEEEEccCCCCC
Q psy12421         58 PNFTFLLRP-RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD--YSM----SYSD-------GVVSMEIIDCKPED  123 (168)
Q Consensus        58 p~~~~~~~~-~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~--~~~----~~~~-------~~~~l~i~~~~~~d  123 (168)
                      |.|...... ..+..|+.+.|.|.+.|.|.|.+.|++++..+....  ...    ....       ....|.|.+++..|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            566543332 456779999999999999999999999999875422  110    0000       13469999999999


Q ss_pred             Ce-EEEEEEEeCCcceEEEEEEE
Q psy12421        124 SG-EYKCVATNKHGTDETNCVVI  145 (168)
Q Consensus       124 ~G-~Y~C~a~n~~g~~~~~~~l~  145 (168)
                      .| .|+|.|.|.+|.....+.|.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GSSCEEEEEECSSCEEEEEEEEE
T ss_pred             CCcEEEEEEEeCCCeEEEEEEEE
Confidence            99 59999999999998888775

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.7e-14  Score=86.13  Aligned_cols=70  Identities=19%  Similarity=0.366  Sum_probs=58.9

Q ss_pred             eEEecCCcEEEEE------EEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         67 RVMQVRQTCKLLC------CLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        67 ~~~~~g~~~~l~C------~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      ..+..|....|.|      .+.+.|.|.+.|++++..+..........++  .|.|.++...|+|.|+|.|.|..|..
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~n~~~g~   84 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--RLIVMNVAEKHRGNYTCHASYTYLGK   84 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEETT--EEEESSCCGGGCEEEEEEEEEEETTE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEecCC--EEEEcccccccCcEEEEEEEECcCCE
Confidence            4677899999999      5679999999999999999765444444555  79999999999999999999988754

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.54  E-value=2.4e-14  Score=84.24  Aligned_cols=80  Identities=13%  Similarity=0.170  Sum_probs=61.7

Q ss_pred             eecCCeEEecCCcEEEEEEEec-cCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceE-
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDE-  139 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~-  139 (168)
                      ..+....+.+|+++.|.|.+.+ .|.+.+.|||++..+..     .....  .|.|.++..+|+|.|.|.|.|..|... 
T Consensus         7 lq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~-----~~~~~--~l~I~~v~~~dsG~Y~C~a~n~~~~~~S   79 (89)
T d1fnla2           7 LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKY-----FHHNS--DFHIPKATLKDSGSYFCRGLVGSKNVSS   79 (89)
T ss_dssp             EECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEE-----EEECC--CEEESSCCGGGCEEEEEEEEETTEEEEC
T ss_pred             EECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccce-----ecccc--ccEECccceeccceEEEEEEeCCCCeEE
Confidence            3455567889999999999874 56668999999976542     11233  688999999999999999999988754 


Q ss_pred             EEEEEEEee
Q psy12421        140 TNCVVIVES  148 (168)
Q Consensus       140 ~~~~l~v~~  148 (168)
                      ..+.|.|.+
T Consensus        80 ~~v~itV~E   88 (89)
T d1fnla2          80 ETVNITITQ   88 (89)
T ss_dssp             CCEEEEEEC
T ss_pred             eeEEEEEEe
Confidence            456777764

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=7.4e-15  Score=88.98  Aligned_cols=88  Identities=17%  Similarity=0.316  Sum_probs=65.2

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-----------CCeEEEecCCEEEEEEccCCCCCCeE
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-----------RDYSMSYSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-----------~~~~~~~~~~~~~l~i~~~~~~d~G~  126 (168)
                      +.+........+.+|+++.|.|.+.|.|.|.+.|++++..+..           ........++  .|.|.++...|+|.
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~   82 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPT--GITFKSVTREDTGT   82 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETT--EEECSCCCTTSCSE
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCc--eEEEecccccceee
Confidence            3444455567788999999999999999999999986543211           0001111223  69999999999999


Q ss_pred             EEEEEEeCCcceEEEEEEEEe
Q psy12421        127 YKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus       127 Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      |.|.|.|..|.......|.|.
T Consensus        83 Y~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          83 YTCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             EEEEEEETTSSCEECCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999998777666553

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.6e-15  Score=91.87  Aligned_cols=89  Identities=22%  Similarity=0.374  Sum_probs=64.1

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEE-eccCCCeeEEEeCCEECCCCC-eE-------EEecCCEEEEEEccCCCCCCeEEE
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKRD-YS-------MSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~~-~~-------~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      |.+........+.+|+.+.|.|.+ .|.|.|.+.|++++..+.... ..       .........|.|.++...|+|.|+
T Consensus         3 P~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~   82 (104)
T d1nbqa2           3 PSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYS   82 (104)
T ss_dssp             CCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEE
T ss_pred             CcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEE
Confidence            333333334567899999999987 589999999999988764321 00       001111226899999999999999


Q ss_pred             EEEEeCCcceEEEEEEEE
Q psy12421        129 CVATNKHGTDETNCVVIV  146 (168)
Q Consensus       129 C~a~n~~g~~~~~~~l~v  146 (168)
                      |.|.|..|...++..+.|
T Consensus        83 C~a~N~~G~~~~s~~v~v  100 (104)
T d1nbqa2          83 CEARNGYGTPMTSNAVRM  100 (104)
T ss_dssp             EEEECSSSCCEECCCBCC
T ss_pred             EEEEECCCceEEEEEEEE
Confidence            999999999877665443

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=1.6e-13  Score=82.62  Aligned_cols=88  Identities=17%  Similarity=0.327  Sum_probs=65.5

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECC-----------CCCeEEEecCCEEEEEEccCCCCCCeE
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS-----------KRDYSMSYSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~-----------~~~~~~~~~~~~~~l~i~~~~~~d~G~  126 (168)
                      |.+........+.+|+.+.|.|.+.|.|.|.+.|++.+....           .........++  +|.|.++..+|.|.
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--tL~I~~v~~~D~G~   79 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSS--GITFSSVTRKDNGE   79 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETT--EEEESCCCGGGCEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCC--EEEEeECCccCCEE
Confidence            445555666788999999999999999999999998543210           00011122233  69999999999999


Q ss_pred             EEEEEEeCCcceEEEEEEEEe
Q psy12421        127 YKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus       127 Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      |.|.|.|..|.......|.|.
T Consensus        80 Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          80 YTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             EEEEEEETTSSSEEEEEEEEE
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999999999998777666553

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.3e-14  Score=85.92  Aligned_cols=79  Identities=20%  Similarity=0.260  Sum_probs=62.1

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCC-eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRD-YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~-~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      +...+.+|+++.|.|.+.| |.|.+.|++++..+.... ......++  .|.|.++..+|+|.|+|.|.|..|.......
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~~~~--~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~   81 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLMGRK--NLLIFNLSEGDSGVYQCLSEERVKNKTVFQV   81 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCTTTT--CEEECSCCGGGCEEEEEEEEEECSSSEEEEE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecceee--EEEECCCCHHHCcEEEEEEEEcCCCEEEEEE
Confidence            3567889999999999988 778999999998875432 22223444  6999999999999999999999987765555


Q ss_pred             EEE
Q psy12421        144 VIV  146 (168)
Q Consensus       144 l~v  146 (168)
                      |.+
T Consensus        82 l~~   84 (92)
T d1olza1          82 VAK   84 (92)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.50  E-value=3.1e-15  Score=88.16  Aligned_cols=84  Identities=17%  Similarity=0.167  Sum_probs=67.7

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC-CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK-RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~-~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      |...+++..+.+|+++.|.|.+ +.|.|.+.|+++|..+.. .++.+...++.+.|.|.++...|+|.|+|.|.|..   
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~n~~---   79 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHILILHNCQLGMTGEVSFQAANAK---   79 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEECSSCEEEECCSCCSCCCSEECCBCSSCB---
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEeeceeEEEEEcCCChhcCEEEEEEECceE---
Confidence            3456778899999999999997 579999999999998865 45566666677789999999999999999986643   


Q ss_pred             EEEEEEEEee
Q psy12421        139 ETNCVVIVES  148 (168)
Q Consensus       139 ~~~~~l~v~~  148 (168)
                       .++.|.|.+
T Consensus        80 -~sa~l~V~e   88 (89)
T d1tiua_          80 -SAANLKVKE   88 (89)
T ss_dssp             -CCEEEEEEC
T ss_pred             -EEEEEEEEE
Confidence             456666653

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.49  E-value=1.4e-14  Score=87.86  Aligned_cols=76  Identities=17%  Similarity=0.240  Sum_probs=60.4

Q ss_pred             CCeEEecCCcEEEEEEE-eccCCCeeEEEeCCEECCC---CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEE
Q psy12421         65 RPRVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDET  140 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~  140 (168)
                      ....+.+|+.+.|.|.+ .|.|.|.+.|++++..+..   .+......++  .|.|.++..+|+|.|+|.|.|..|....
T Consensus        12 ~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~   89 (105)
T d1cs6a2          12 DPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG--NLYIAKTEASDLGNYSCFATSHIDFITK   89 (105)
T ss_dssp             CCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTC--CEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             CCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCC--EEeecccccccCcEEEEEEEECCCCEEE
Confidence            34679999999999997 6899999999999876532   2222222344  6999999999999999999999998766


Q ss_pred             EE
Q psy12421        141 NC  142 (168)
Q Consensus       141 ~~  142 (168)
                      +.
T Consensus        90 ~v   91 (105)
T d1cs6a2          90 SV   91 (105)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.2e-13  Score=82.97  Aligned_cols=82  Identities=20%  Similarity=0.265  Sum_probs=66.8

Q ss_pred             CeEEecCCcEEEEEEEe-ccCCCeeEEEeCCEECCC---CCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEE
Q psy12421         66 PRVMQVRQTCKLLCCLS-GKPPPTVKWYKGNRELSK---RDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETN  141 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~-g~p~p~i~W~~~~~~~~~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~  141 (168)
                      .....+|+.+.|.|.+. +.|.+.+.|++++..+..   ....+...++  +|.|.+++..|+|.|+|.|.|..|....+
T Consensus        11 ~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~--~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~   88 (101)
T d1iray1          11 ILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKE--KLWFVPAKVEDSGHYYCVVRNSSYCLRIK   88 (101)
T ss_dssp             CEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEETT--EEEETTCCGGGCEEEEEEEEETTEEEEEE
T ss_pred             EEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEeccCC--EEEeccceecCCEEEEEEEECCCCeEEEE
Confidence            45677899999999875 689999999998864431   2223334455  79999999999999999999999999999


Q ss_pred             EEEEEeeC
Q psy12421        142 CVVIVESE  149 (168)
Q Consensus       142 ~~l~v~~~  149 (168)
                      +.|.|...
T Consensus        89 ~~L~V~~~   96 (101)
T d1iray1          89 ISAKFVEN   96 (101)
T ss_dssp             EEEEEECC
T ss_pred             EEEEEEeC
Confidence            99999764

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.4e-14  Score=85.80  Aligned_cols=91  Identities=14%  Similarity=0.231  Sum_probs=70.1

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEec-cCCC--eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      .|+.+.+.+....+.+|+.+.|.|.+.| .|.|  .+.|++++..+.....  ........|.|......|.|.|+|.|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~--~~~~~~s~l~i~~~~~dd~g~ytC~A~   80 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA--VGEPAEVTTTVLVRRDHHGAQFSCRTE   80 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC--CTTTEEEEEEEECCSSCSSCEEEEEEE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc--ccccceEEEEEeeehhHCCCEEEEEEE
Confidence            4678888888888999999999999986 5655  5789999987753211  112234478999999999999999999


Q ss_pred             eCCcceEEEEEEEEee
Q psy12421        133 NKHGTDETNCVVIVES  148 (168)
Q Consensus       133 n~~g~~~~~~~l~v~~  148 (168)
                      |..|+......+.+..
T Consensus        81 n~~g~~~~~~~~~~s~   96 (103)
T d1iama1          81 LDLRPQGLELFENTSA   96 (103)
T ss_dssp             EECGGGTSCEEEEECC
T ss_pred             eCCCCccCeEeeeEcC
Confidence            9999876666666643

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.45  E-value=2e-13  Score=79.33  Aligned_cols=74  Identities=19%  Similarity=0.271  Sum_probs=60.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCe-eEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +|.+...+....+.+|++++|.|.+.|.|.+. +.|++++..+..       ...  .|.|.+++..|+|.|+|.|.|..
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~-------~~~--~l~i~~~~~~d~G~Y~C~a~~s~   75 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISS-------QAS--SYFIDAATVNDSGEYRCQTNLST   75 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEES-------SCS--EEEESSCCGGGCEEEEEECSSSC
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeee-------cce--eeEecCCcccCCEEEEEEccCCC
Confidence            56777888888999999999999999999885 567888865543       222  69999999999999999998876


Q ss_pred             cceE
Q psy12421        136 GTDE  139 (168)
Q Consensus       136 g~~~  139 (168)
                      ++..
T Consensus        76 ~S~~   79 (84)
T d1fnla1          76 LSDP   79 (84)
T ss_dssp             CCCC
T ss_pred             cccc
Confidence            5543

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.45  E-value=1.4e-13  Score=80.10  Aligned_cols=73  Identities=15%  Similarity=0.303  Sum_probs=60.1

Q ss_pred             CeEEeecCCeEEecCCcEEEEEEEeccCCC-eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         58 PNFTFLLRPRVMQVRQTCKLLCCLSGKPPP-TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        58 p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p-~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      |.+...+....+.+|+.+.|.|.+.+.|.+ .+.|++++..+....       .  .|.|..+...|+|.|.|.+.|..+
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~-------~--~l~i~~v~~~dsG~Y~C~a~ns~~   75 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHT-------Q--PSYRFKANNNDSGEYTCQTGQTSL   75 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCC-------S--SEEEEECCGGGCEEEEEECTTSBC
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecccccccccc-------c--ceEEeeccccCCcEEEEECCCCcc
Confidence            566777778899999999999999998876 588999998876421       2  588999999999999999988766


Q ss_pred             ceE
Q psy12421        137 TDE  139 (168)
Q Consensus       137 ~~~  139 (168)
                      +..
T Consensus        76 S~~   78 (85)
T d2fcba1          76 SDP   78 (85)
T ss_dssp             CCC
T ss_pred             ccc
Confidence            544

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=7e-15  Score=90.55  Aligned_cols=96  Identities=18%  Similarity=0.337  Sum_probs=72.7

Q ss_pred             cccCCCeEEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCCEECCCC---CeEEEe---cC-CEEEEEEccCCCCC-
Q psy12421         53 TVESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGNRELSKR---DYSMSY---SD-GVVSMEIIDCKPED-  123 (168)
Q Consensus        53 ~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~~~~~~~---~~~~~~---~~-~~~~l~i~~~~~~d-  123 (168)
                      .+..||.|. .+....+.+|+.+.|.|.+.|. |.+.+.|++++..+...   ++.+..   .. ..+.|.|.++...| 
T Consensus         3 ~V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~   81 (115)
T d2crya1           3 TVNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADF   81 (115)
T ss_dssp             CCCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHH
T ss_pred             EEecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcC
Confidence            345677775 5566778899999999999985 45689999998877542   222211   11 13469999999999 


Q ss_pred             CeEEEEEEEeCCcceEEEEEEEEeeC
Q psy12421        124 SGEYKCVATNKHGTDETNCVVIVESE  149 (168)
Q Consensus       124 ~G~Y~C~a~n~~g~~~~~~~l~v~~~  149 (168)
                      +|.|+|.|.|..|.....+.|.|...
T Consensus        82 ~G~Y~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          82 QTIYNCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             HSCEEEEEECSSCEEEEEECCCCSCS
T ss_pred             CeEEEEEEEECCCeEEEEEEEEEECC
Confidence            69999999999999999998888654

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=1.3e-13  Score=79.79  Aligned_cols=79  Identities=22%  Similarity=0.350  Sum_probs=59.8

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCe-eEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPT-VKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~-i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +|.|...+....+.+|+.+.|.|.+.+.|.+. +.|++++..+...       ..  .|.|.+++..|+|.|.|.|.|..
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~-------~~--~l~i~~v~~~d~G~Y~C~a~~s~   71 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-------NS--SLNIVNAKFEDSGEYKCQHQQVN   71 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCC-------SS--EEEECSCCGGGCEEEEEECTTSS
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc-------cc--eeEECCCChhhCCcEEEEecCCC
Confidence            36777788888899999999999999988875 5678888776542       22  69999999999999999998876


Q ss_pred             cceEEEEEEEE
Q psy12421        136 GTDETNCVVIV  146 (168)
Q Consensus       136 g~~~~~~~l~v  146 (168)
                      ++..  +.|.|
T Consensus        72 ~S~~--v~l~V   80 (82)
T d1f2qa1          72 ESEP--VYLEV   80 (82)
T ss_dssp             CCCC--EEEEE
T ss_pred             Cccc--EEEEE
Confidence            6544  34444

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=5.1e-13  Score=80.94  Aligned_cols=86  Identities=13%  Similarity=0.268  Sum_probs=59.4

Q ss_pred             eecCCeEEecCCcEEEEEEEec-c--CCCeeEEEeCCEECCCCCe---EEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSG-K--PPPTVKWYKGNRELSKRDY---SMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g-~--p~p~i~W~~~~~~~~~~~~---~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ..+....+.+|+.++|.|.+.| .  |.+.+.|++++..+.....   ........+.|.+......|.|.|+|.|.|..
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~   86 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL   86 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecC
Confidence            4555677889999999999986 4  4558999999988743110   00111223357777777788889999999998


Q ss_pred             cceEEEEEEEEe
Q psy12421        136 GTDETNCVVIVE  147 (168)
Q Consensus       136 g~~~~~~~l~v~  147 (168)
                      |.......+.+.
T Consensus        87 ~~~~~~~~~~~s   98 (106)
T d1zxqa1          87 MSRGGNIFHKHS   98 (106)
T ss_dssp             GGGTCCEEEEEC
T ss_pred             CCCCCeeEeccc
Confidence            876555555443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.29  E-value=7e-13  Score=80.94  Aligned_cols=77  Identities=22%  Similarity=0.311  Sum_probs=57.5

Q ss_pred             eEEecCCcEEEEEEE-eccCCCeeEEEeCCEECCCC-------CeEEEecCCEEEEEEccCCCCCCe---EEEEEEEeCC
Q psy12421         67 RVMQVRQTCKLLCCL-SGKPPPTVKWYKGNRELSKR-------DYSMSYSDGVVSMEIIDCKPEDSG---EYKCVATNKH  135 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~-~g~p~p~i~W~~~~~~~~~~-------~~~~~~~~~~~~l~i~~~~~~d~G---~Y~C~a~n~~  135 (168)
                      ..+.+|+++.|.|.+ .|.|.|.+.|++++..+...       .......++  .|.|.+++..|+|   .|.|.|.|.+
T Consensus        12 ~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~v~~~D~gd~g~Y~C~A~N~~   89 (111)
T d1biha2          12 KTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG--NLYFTIVTKEDVSDIYKYVCTAKNAA   89 (111)
T ss_dssp             ECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS--CEEEEEECGGGCCSSEEEEEEEECTT
T ss_pred             ccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccccc--ccEEeeeEeeccCCceEEEEEEEeCC
Confidence            446789999999986 89999999999986654221       111222344  6899999888766   7999999999


Q ss_pred             cceEEEEEEE
Q psy12421        136 GTDETNCVVI  145 (168)
Q Consensus       136 g~~~~~~~l~  145 (168)
                      |.......+.
T Consensus        90 g~~~~~~~~~   99 (111)
T d1biha2          90 VDEEVVLVEY   99 (111)
T ss_dssp             CSSCEEEEEE
T ss_pred             CCceEEEEEE
Confidence            9987766443

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.12  E-value=1.5e-09  Score=66.96  Aligned_cols=87  Identities=21%  Similarity=0.316  Sum_probs=61.3

Q ss_pred             cCCeEEecCCcEEEEEEEeccC---CCeeEEEeCCEEC-----------C-----C--CCeEEEe---cCCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP---PPTVKWYKGNREL-----------S-----K--RDYSMSY---SDGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~~~~-----------~-----~--~~~~~~~---~~~~~~l~i~~~  119 (168)
                      .....+.+|+++.|.|......   ...+.|++.+...           .     .  .+.....   ..+..+|.|.++
T Consensus         9 ~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v   88 (126)
T d1pkoa_           9 GHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALRIQNV   88 (126)
T ss_dssp             SSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEEESSC
T ss_pred             CCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEEEEEE
Confidence            3346788999999999976433   3468999864311           0     0  1111111   234568999999


Q ss_pred             CCCCCeEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        120 KPEDSGEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      +..|+|.|.|.+.+..+.....+.|.|.++.
T Consensus        89 ~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~  119 (126)
T d1pkoa_          89 RFSDEGGYTCFFRDHSYQEEAAVELKVEDPF  119 (126)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEEEEECTT
T ss_pred             chhHCeEEEEEEEECCCEEEEEEEEEEeCCC
Confidence            9999999999999998888888889998753

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.4e-11  Score=70.86  Aligned_cols=77  Identities=17%  Similarity=0.154  Sum_probs=54.8

Q ss_pred             eEEecCCcEEEEEEEeccCCCeeEEEeCCEECCC---C--------CeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSK---R--------DYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~---~--------~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ....+|++++|.|.. ..|.+.+.|++++..+..   .        ...........+|.|.+++.+|+|.|.|.+.|..
T Consensus         5 v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~c~~~n~~   83 (93)
T d1ccza1           5 IYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYEMESPNIT   83 (93)
T ss_dssp             EEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTCCEEECSCCGGGCEEEEEECTTCC
T ss_pred             EEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCeeEEEEEecChhhCEEEEEEEECCC
Confidence            567789999999986 568899999998876521   0        0111112222379999999999999999998887


Q ss_pred             cceEEEEEEEE
Q psy12421        136 GTDETNCVVIV  146 (168)
Q Consensus       136 g~~~~~~~l~v  146 (168)
                      +...  +.|.|
T Consensus        84 ~t~~--~~l~V   92 (93)
T d1ccza1          84 DTMK--FFLYV   92 (93)
T ss_dssp             SCEE--EEEEE
T ss_pred             cEEE--EEEEE
Confidence            7554  44443

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=9.1e-10  Score=65.25  Aligned_cols=79  Identities=16%  Similarity=0.189  Sum_probs=56.1

Q ss_pred             eEEecCCcEEEEEEEe-c-cCCCeeEEEeCCEECC----------CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         67 RVMQVRQTCKLLCCLS-G-KPPPTVKWYKGNRELS----------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~-g-~p~p~i~W~~~~~~~~----------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ....+|+.+.|.|... . .....+.|++++..+.          .........++  +|.|.+++.+|+|.|.|.+.+.
T Consensus         5 V~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ng--SL~I~nl~~~DsG~Y~c~v~~~   82 (98)
T d1hnga1           5 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG--DLKIKNLTRDDSGTYNVTVYST   82 (98)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS--CEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCc--cEEEeCCCHHHCEEEEEEEEeC
Confidence            3456799999999632 2 2335799999887552          11122233445  7999999999999999999999


Q ss_pred             Ccce--EEEEEEEEe
Q psy12421        135 HGTD--ETNCVVIVE  147 (168)
Q Consensus       135 ~g~~--~~~~~l~v~  147 (168)
                      .|..  ...+.|.|.
T Consensus        83 ~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          83 NGTRILNKALDLRIL   97 (98)
T ss_dssp             TCCEEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEEEEE
Confidence            9876  556667664

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.78  E-value=5.7e-08  Score=59.58  Aligned_cols=77  Identities=17%  Similarity=0.348  Sum_probs=57.0

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEECC---------C--------------CCeEEEe-cCC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NRELS---------K--------------RDYSMSY-SDG  110 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~~---------~--------------~~~~~~~-~~~  110 (168)
                      +|.+.+.|....+.+|++++|.|...+.....+.||+.  +..+.         .              .++.... .+.
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~   80 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNN   80 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTT
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCC
Confidence            57888899999999999999999998888888999972  21110         0              0111211 234


Q ss_pred             EEEEEEccCCCCCCeEEEEEEEe
Q psy12421        111 VVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus       111 ~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ...|.|.+++.+|+|.|.|.+..
T Consensus        81 ~~~L~I~~~~~~Dsg~YyCa~~~  103 (122)
T d1nezg_          81 KYVLTLNKFSKENEGYYFCSVIS  103 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EeEEEEcccccCCCEEEEeeEeC
Confidence            45799999999999999998763

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.4e-08  Score=62.09  Aligned_cols=82  Identities=16%  Similarity=0.289  Sum_probs=55.8

Q ss_pred             CeEEecCCcEEEEEEEeccCC----CeeEEEeCCEEC----------------C---C---CCeEEEe---cCCEEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPP----PTVKWYKGNREL----------------S---K---RDYSMSY---SDGVVSMEI  116 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~----p~i~W~~~~~~~----------------~---~---~~~~~~~---~~~~~~l~i  116 (168)
                      ...+.+|+++.|.|.....+.    ..+.|++.....                .   .   .+..+..   ..+..+|.|
T Consensus        13 ~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I   92 (124)
T d1eaja_          13 MIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINV   92 (124)
T ss_dssp             EEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGTBCCEEE
T ss_pred             eEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCCEEEEEE
Confidence            356779999999999875433    357898631100                0   0   1111111   123346999


Q ss_pred             ccCCCCCCeEEEEEEEeCCcceEEEEEEEEe
Q psy12421        117 IDCKPEDSGEYKCVATNKHGTDETNCVVIVE  147 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~  147 (168)
                      .+++..|+|.|.|.+.+..|.......|.|.
T Consensus        93 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          93 TNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            9999999999999999998887777777764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.71  E-value=1.2e-08  Score=61.27  Aligned_cols=77  Identities=21%  Similarity=0.228  Sum_probs=51.2

Q ss_pred             EEecCCcEEEEEEEeccCCCeeEEEeCCEECC----------------C---CCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS----------------K---RDYSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~----------------~---~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      .+.+|+++.|.|.........+.|+|......                .   ..+.....++  +|.|.+++.+|+|.|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng--SL~I~~v~~~D~G~Y~   87 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG--SLLFQMITMKDMGVYT   87 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS--CEEECSCCGGGCEEEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc--cEEEcCCCchhCEEEE
Confidence            35689999999974333467899998543210                0   0112223344  7999999999999999


Q ss_pred             EEEEeCCc-ceEEEEEEEE
Q psy12421        129 CVATNKHG-TDETNCVVIV  146 (168)
Q Consensus       129 C~a~n~~g-~~~~~~~l~v  146 (168)
                      |.+.+..+ .......|.|
T Consensus        88 c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          88 LDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEETTEEECCCCEEECC
T ss_pred             EEEEECCCCEEEEEEEEEE
Confidence            99987754 3444555543

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.71  E-value=1.4e-07  Score=56.29  Aligned_cols=74  Identities=20%  Similarity=0.286  Sum_probs=54.1

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--E--EC-----------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--R--EL-----------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~--~~-----------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +.+.|....+.+|++++|.|.........+.||+..  .  .+           ...++..........|.|.++..+|+
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~L~I~~~~~~Ds   82 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSGRDYSFSISNLEPEDI   82 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEECSCCGGGC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCCCEeeeEehhhcccCC
Confidence            345667788899999999999876666679999842  1  11           12334444455667899999999999


Q ss_pred             eEEEEEEEe
Q psy12421        125 GEYKCVATN  133 (168)
Q Consensus       125 G~Y~C~a~n  133 (168)
                      +.|.|.+..
T Consensus        83 A~YyCa~~~   91 (106)
T d1a0ql1          83 ATYYCLQYY   91 (106)
T ss_dssp             SEEEEEECS
T ss_pred             EeEEEEEeC
Confidence            999998654

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.71  E-value=3.1e-08  Score=58.06  Aligned_cols=79  Identities=10%  Similarity=0.003  Sum_probs=53.7

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      +|.+...+. ..+..|++++|.|... .+...+.|+|++..................|.|.+++..|+|.|.|...+..+
T Consensus         4 KPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~   81 (95)
T d1olla1           4 KPFIWAEPH-FMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGEL   81 (95)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSCTTCCEEEEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCEEEeeCC-CcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccCCCccEEEEEEeeeecCCCceEEEEeCCCCC
Confidence            466666664 4577999999999863 45667888998864321100000122234699999999999999999887654


Q ss_pred             c
Q psy12421        137 T  137 (168)
Q Consensus       137 ~  137 (168)
                      .
T Consensus        82 ~   82 (95)
T d1olla1          82 W   82 (95)
T ss_dssp             E
T ss_pred             c
Confidence            3

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=9.4e-08  Score=57.10  Aligned_cols=74  Identities=18%  Similarity=0.281  Sum_probs=54.1

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +++.|....+.+|++++|.|.........+.||+.  +..+             ...++.....+....|.|.+++.+|+
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Ds   83 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTGTDFVFTIENTLSEDV   83 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCCCeeeecccCCccccC
Confidence            34566677888999999999987666667999974  2211             12334444455667899999999999


Q ss_pred             eEEEEEEEe
Q psy12421        125 GEYKCVATN  133 (168)
Q Consensus       125 G~Y~C~a~n  133 (168)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (106)
T d1i8ka_          84 GDYYCLQSF   92 (106)
T ss_dssp             EEEEEEECS
T ss_pred             EEEeEecCc
Confidence            999997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.64  E-value=1.8e-07  Score=55.94  Aligned_cols=74  Identities=22%  Similarity=0.269  Sum_probs=54.3

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +.+.+....+.+|++++|.|.........+.||+..  ..+             ...++..........|.|.+++.+|+
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSGTDFTLSINSVETEDF   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccCCEEEEEEcccCcCCC
Confidence            345566778999999999999876666779999742  111             12344444455667899999999999


Q ss_pred             eEEEEEEEe
Q psy12421        125 GEYKCVATN  133 (168)
Q Consensus       125 G~Y~C~a~n  133 (168)
                      |.|.|.+.+
T Consensus        84 a~YyCa~~~   92 (107)
T d1j1pl_          84 GMYFCQQAN   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEEEcCC
Confidence            999997654

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=8.5e-07  Score=53.48  Aligned_cols=76  Identities=21%  Similarity=0.330  Sum_probs=52.8

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeC--CEE---C-----------CCCCeEEEec--CCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKG--NRE---L-----------SKRDYSMSYS--DGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~--~~~---~-----------~~~~~~~~~~--~~~~~l~i~~~~  120 (168)
                      +++.|....+.+|+++.|.|...+. ....+.||+.  +..   +           ...++.....  .....|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            3456777889999999999998653 4567899973  111   1           1223443332  234579999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy12421        121 PEDSGEYKCVATNKH  135 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~  135 (168)
                      .+|+|.|.|.+....
T Consensus        82 ~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          82 RNDSGIYLCGAISLH   96 (114)
T ss_dssp             GGGCEEEEEEEECSS
T ss_pred             cCCCeEEEEEEEeCC
Confidence            999999999876543

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.61  E-value=2.6e-07  Score=55.23  Aligned_cols=75  Identities=20%  Similarity=0.288  Sum_probs=55.2

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCC
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d  123 (168)
                      .+.+.|.+..+.+|++++|.|.........+.||+..  ..+             ...++.....+....|.|.+++.+|
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSGTEFTLTISTLRPED   82 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGG
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccCCEEEEEeccceeCc
Confidence            3456677788999999999999876667789999842  111             1223444445566789999999999


Q ss_pred             CeEEEEEEEe
Q psy12421        124 SGEYKCVATN  133 (168)
Q Consensus       124 ~G~Y~C~a~n  133 (168)
                      ++.|.|.+..
T Consensus        83 sA~YyCa~~~   92 (107)
T d1tjgl1          83 FATYYCQQLH   92 (107)
T ss_dssp             CSEEEEEECS
T ss_pred             CceEEEEECc
Confidence            9999996543

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.61  E-value=1.9e-07  Score=55.81  Aligned_cols=74  Identities=19%  Similarity=0.277  Sum_probs=53.4

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      .+.|.+..+.+|++++|.|.........+.||+.  |+.+             ...++..........|.|.+++.+|+|
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   84 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSGSDYSLTISSLESEDFA   84 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccCCEEEEEEhhhcccCCe
Confidence            4556667888999999999987766777999973  2211             112333344455668999999999999


Q ss_pred             EEEEEEEeC
Q psy12421        126 EYKCVATNK  134 (168)
Q Consensus       126 ~Y~C~a~n~  134 (168)
                      .|.|.+.+.
T Consensus        85 ~YyCa~~~~   93 (107)
T d1c5cl1          85 DYYCLQYAS   93 (107)
T ss_dssp             EEEEEECSS
T ss_pred             EEEEecCcC
Confidence            999976543

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=1.4e-07  Score=57.07  Aligned_cols=76  Identities=18%  Similarity=0.294  Sum_probs=54.7

Q ss_pred             eEEeecCCeEEecCCcEEEEEEEeccC-CCeeEEEeCCE--EC-------------------CCCCeEEEecCCEEEEEE
Q psy12421         59 NFTFLLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKGNR--EL-------------------SKRDYSMSYSDGVVSMEI  116 (168)
Q Consensus        59 ~~~~~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~~~--~~-------------------~~~~~~~~~~~~~~~l~i  116 (168)
                      ++.+.|.+..+.+|++++|.|...+.. ...+.||+...  .+                   ...++..........|.|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~~~~L~I   81 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGDTFVLTL   81 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETTEEEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCCChhcEE
Confidence            356678888999999999999986543 45689998421  00                   012334444455668999


Q ss_pred             ccCCCCCCeEEEEEEEeC
Q psy12421        117 IDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+++.+|+|.|.|.+...
T Consensus        82 ~~l~~~Dsg~YyCa~~~~   99 (114)
T d1akjd_          82 SDFRRENEGYYFCSALSN   99 (114)
T ss_dssp             SSCCGGGCEEEEEEEEET
T ss_pred             ccCCCCCCEEEeEeEcCC
Confidence            999999999999987643

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.60  E-value=1.9e-07  Score=55.76  Aligned_cols=73  Identities=21%  Similarity=0.300  Sum_probs=53.4

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      .+.|....+.+|++++|.|.........+.||+..  ..+             ...++..........|.|.+++.+|+|
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DSa   84 (107)
T d1kcvl1           5 TQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSATDFTLTISSVQADDDA   84 (107)
T ss_dssp             EESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             ECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccCCeeecEEHhheecCCc
Confidence            34566678889999999999877666779999742  111             122344444556678999999999999


Q ss_pred             EEEEEEEe
Q psy12421        126 EYKCVATN  133 (168)
Q Consensus       126 ~Y~C~a~n  133 (168)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1kcvl1          85 DYYCGQSY   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEEecC
Confidence            99997653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.60  E-value=1.5e-07  Score=56.32  Aligned_cols=73  Identities=16%  Similarity=0.210  Sum_probs=52.9

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      .+.|....+.+|++++|.|...+.....+.||+..  ..+             ...++..........|.|.+++.+|+|
T Consensus         5 tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~Dsa   84 (107)
T d1ospl1           5 SQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSGKDYTLSITSLQTEDVA   84 (107)
T ss_dssp             ECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSSEEEEESSCCGGGCS
T ss_pred             EeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCCCeEEeEEcccccccCC
Confidence            34566678889999999999876655679999842  111             123444444455678999999999999


Q ss_pred             EEEEEEEe
Q psy12421        126 EYKCVATN  133 (168)
Q Consensus       126 ~Y~C~a~n  133 (168)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1ospl1          85 TYFCQQYW   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             cEEEeecc
Confidence            99997653

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.59  E-value=3.4e-07  Score=54.58  Aligned_cols=73  Identities=21%  Similarity=0.239  Sum_probs=54.3

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--E---EC----------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--R---EL----------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~---~~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      ++.|....+.+|++++|.|.........+.||+..  .   .+          ...++.....+....|.|.+++.+|+|
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   83 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSGTEFTLTISGLQFDDFA   83 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCS
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccCCEEEEEEccccccCCC
Confidence            35677788999999999999876666779999752  1   11          113444444556668999999999999


Q ss_pred             EEEEEEEe
Q psy12421        126 EYKCVATN  133 (168)
Q Consensus       126 ~Y~C~a~n  133 (168)
                      .|.|.+..
T Consensus        84 ~YyCa~~~   91 (106)
T d1op3k1          84 TYHCQHYA   91 (106)
T ss_dssp             EEEEEEEC
T ss_pred             cEeeeeCC
Confidence            99997654

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.58  E-value=4.7e-07  Score=54.12  Aligned_cols=74  Identities=23%  Similarity=0.282  Sum_probs=53.3

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +.+.|....+.+|++++|.|.........+.||+..  ..+             ....+.....+....|.|.+++.+|+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~Ds   83 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSGTDFTLTISSLEPEDF   83 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESSSEEEEEECSCCTTCC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCCCEEEeEeeeeEeccc
Confidence            345666778899999999999877666779999742  111             01223344445566899999999999


Q ss_pred             eEEEEEEEe
Q psy12421        125 GEYKCVATN  133 (168)
Q Consensus       125 G~Y~C~a~n  133 (168)
                      |.|.|.+.+
T Consensus        84 a~YyCA~~~   92 (108)
T d1jhll_          84 AMYICQQHN   92 (108)
T ss_dssp             SEEEEEECS
T ss_pred             eEEEEeeCC
Confidence            999997554

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.57  E-value=2e-07  Score=56.21  Aligned_cols=77  Identities=18%  Similarity=0.352  Sum_probs=53.5

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EE--C-----C------CCCeEE--EecCCEEEEEEccCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RE--L-----S------KRDYSM--SYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~--~-----~------~~~~~~--~~~~~~~~l~i~~~~~~  122 (168)
                      +.+.|....+.+|++++|.|...+.....+.||+..  ..  +     .      ..++..  ........|.|.+++.+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            344566678889999999999887666789999842  11  0     0      011111  22344567999999999


Q ss_pred             CCeEEEEEEEeCCc
Q psy12421        123 DSGEYKCVATNKHG  136 (168)
Q Consensus       123 d~G~Y~C~a~n~~g  136 (168)
                      |+|.|.|.+....+
T Consensus        83 Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          83 DSATYLCAVRPTSG   96 (113)
T ss_dssp             GCEEEEEEEEESSS
T ss_pred             CCcEEeEeEecCCC
Confidence            99999998875543

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=3.2e-07  Score=54.95  Aligned_cols=73  Identities=26%  Similarity=0.341  Sum_probs=53.5

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EE---C----------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RE---L----------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~---~----------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +++.|....+.+|++++|.|.........+.||+..  ..   +          ...++..........|.|.+++.+|+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSGTQFSLKINSLLPEDF   83 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccCCEEEEEEccccccCC
Confidence            345667788889999999999876666679999842  11   1          11234444455567899999999999


Q ss_pred             eEEEEEEE
Q psy12421        125 GEYKCVAT  132 (168)
Q Consensus       125 G~Y~C~a~  132 (168)
                      |.|.|.+.
T Consensus        84 a~YyCA~~   91 (109)
T d1mqkl_          84 GSYYCQHH   91 (109)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEeee
Confidence            99999765

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=2.6e-07  Score=54.37  Aligned_cols=80  Identities=11%  Similarity=0.076  Sum_probs=52.6

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECC--CCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELS--KRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~--~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +|.+...+. ..+..|++++|.|... .+...+.|+|++....  ..............+.|.++...|+|.|.|...+.
T Consensus         7 kPsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~   84 (99)
T d1ucta1           7 MPFISAKSS-PVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIG   84 (99)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEET
T ss_pred             CCEEEecCC-CceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECC
Confidence            566666654 4678899999999864 4566788998763111  10000000112226899999999999999999887


Q ss_pred             Ccce
Q psy12421        135 HGTD  138 (168)
Q Consensus       135 ~g~~  138 (168)
                      ....
T Consensus        85 ~~~S   88 (99)
T d1ucta1          85 HYRF   88 (99)
T ss_dssp             TTEE
T ss_pred             Cccc
Confidence            6543

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=3.4e-07  Score=54.69  Aligned_cols=74  Identities=19%  Similarity=0.256  Sum_probs=54.1

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +.+.|....+.+|++++|.|.........+.||+..  ..+             ...++..........|.|.+++.+|+
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSGQDYSLTISSLEYEDM   83 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccCCEEEccccccCCcCC
Confidence            345666778899999999999877666778999742  111             11344444455667899999999999


Q ss_pred             eEEEEEEEe
Q psy12421        125 GEYKCVATN  133 (168)
Q Consensus       125 G~Y~C~a~n  133 (168)
                      |.|.|.+..
T Consensus        84 a~YyCa~~~   92 (107)
T d1d5il1          84 GIYYCLQYD   92 (107)
T ss_dssp             EEEEEEECS
T ss_pred             EEEEeeecc
Confidence            999997554

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.55  E-value=1.9e-07  Score=55.79  Aligned_cols=73  Identities=19%  Similarity=0.261  Sum_probs=52.6

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      ++.+....+.+|++++|.|.........+.||+.  +..+             ...++.....+....|.|.+++.+|++
T Consensus         5 tQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~~~~~L~I~~~~~~DsA   84 (107)
T d1mexl1           5 TQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSGTDFTLTINNVQSEDLA   84 (107)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             EcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCCCeeeeeechhheecce
Confidence            3455567788999999999987665667899974  2111             123344444556678999999999999


Q ss_pred             EEEEEEEe
Q psy12421        126 EYKCVATN  133 (168)
Q Consensus       126 ~Y~C~a~n  133 (168)
                      .|.|.+..
T Consensus        85 ~YyCa~~~   92 (107)
T d1mexl1          85 EYFCQQYN   92 (107)
T ss_dssp             EEEEEECS
T ss_pred             eEEEeECC
Confidence            99997543

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.55  E-value=2.5e-07  Score=55.88  Aligned_cols=75  Identities=20%  Similarity=0.420  Sum_probs=53.4

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC-------C------CCCeEEE--ecCCEEEEEEccCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL-------S------KRDYSMS--YSDGVVSMEIIDCKPE  122 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~-------~------~~~~~~~--~~~~~~~l~i~~~~~~  122 (168)
                      +.+.|....+.+|+.++|.|.....+...+.||+...  .+       .      ..++...  ......+|.|.+++.+
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            3456677889999999999998877778899997421  11       0      0112111  1234567999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12421        123 DSGEYKCVATNK  134 (168)
Q Consensus       123 d~G~Y~C~a~n~  134 (168)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          83 DSASYICVVSDR   94 (114)
T ss_dssp             GCSEEEEEEECS
T ss_pred             hCcccceeeecC
Confidence            999999998864

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=3.4e-07  Score=54.83  Aligned_cols=83  Identities=8%  Similarity=0.122  Sum_probs=50.7

Q ss_pred             EEecCCcEEEEEEEec-cCCC--eeEEEeCCEECCCCCeE--EEecCC---EEEEEEccCCCCCCeEEEEEEEeCCcc--
Q psy12421         68 VMQVRQTCKLLCCLSG-KPPP--TVKWYKGNRELSKRDYS--MSYSDG---VVSMEIIDCKPEDSGEYKCVATNKHGT--  137 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g-~p~p--~i~W~~~~~~~~~~~~~--~~~~~~---~~~l~i~~~~~~d~G~Y~C~a~n~~g~--  137 (168)
                      .+.+|+.+.|.|.+.+ .|.+  .+.|++++..+......  ....+.   .+.|.+......+...|+|.|.+..+.  
T Consensus        12 ~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~~~   91 (109)
T d1vcaa1          12 PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD   91 (109)
T ss_dssp             CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCCT
T ss_pred             CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCCcc
Confidence            3679999999999875 6754  68899998866321100  000011   124565544445556899999988654  


Q ss_pred             -----eEEEEEEEEeeCC
Q psy12421        138 -----DETNCVVIVESEE  150 (168)
Q Consensus       138 -----~~~~~~l~v~~~p  150 (168)
                           ...+..|.|.+.|
T Consensus        92 ~~~~~~~t~~~L~V~~~P  109 (109)
T d1vcaa1          92 SVPTVRQAVKELQVYISP  109 (109)
T ss_dssp             TSCSEEEEEEECCEECCC
T ss_pred             ccccccceeEEeEEEeCC
Confidence                 2334456666554

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.53  E-value=5.9e-07  Score=53.78  Aligned_cols=74  Identities=20%  Similarity=0.263  Sum_probs=53.8

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +.+.|....+.+|++++|.|...+.....+.||+..  ..+             ...++.....+....|.|.+++.+|+
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~l~~~Ds   85 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSGTDYTFTISSLQPEDI   85 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCCCEeEEEEeeceeCcC
Confidence            345566778889999999999877666778999732  111             12334444455566899999999999


Q ss_pred             eEEEEEEEe
Q psy12421        125 GEYKCVATN  133 (168)
Q Consensus       125 G~Y~C~a~n  133 (168)
                      |.|.|.+..
T Consensus        86 a~YyCA~~~   94 (109)
T d1bwwa_          86 ATYYCQQYQ   94 (109)
T ss_dssp             EEEEEEECS
T ss_pred             ceEEEeecC
Confidence            999997654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=4.2e-07  Score=55.06  Aligned_cols=86  Identities=15%  Similarity=0.139  Sum_probs=52.3

Q ss_pred             eecCCeEEecCCcEEEEEEEecc----CCCeeEEEeCC--E----EC---------C--C----CCeEEE--ecCCEEEE
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGK----PPPTVKWYKGN--R----EL---------S--K----RDYSMS--YSDGVVSM  114 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~----p~p~i~W~~~~--~----~~---------~--~----~~~~~~--~~~~~~~l  114 (168)
                      ..+....+..|++++|.|.....    ....+.|++..  .    .+         .  .    .+..+.  ...+..+|
T Consensus         4 ~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   83 (119)
T d1neua_           4 YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGSI   83 (119)
T ss_dssp             ECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCCE
T ss_pred             cCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEEE
Confidence            34556778899999999987532    23478998631  1    00         0  0    111111  12233479


Q ss_pred             EEccCCCCCCeEEEEEEEeCCcc--eEEEEEEEEe
Q psy12421        115 EIIDCKPEDSGEYKCVATNKHGT--DETNCVVIVE  147 (168)
Q Consensus       115 ~i~~~~~~d~G~Y~C~a~n~~g~--~~~~~~l~v~  147 (168)
                      .|.+++..|+|.|.|.+.+..+.  ......|.|.
T Consensus        84 ~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          84 VIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            99999999999999999886433  3444556554

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=2.8e-07  Score=55.76  Aligned_cols=88  Identities=13%  Similarity=0.125  Sum_probs=56.4

Q ss_pred             ecCCeEEecCCcEEEEEEEecc---CCCeeEEEeCCEEC---------------CCCCeEE--EecCCEEEEEEccCCCC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGK---PPPTVKWYKGNREL---------------SKRDYSM--SYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~---p~p~i~W~~~~~~~---------------~~~~~~~--~~~~~~~~l~i~~~~~~  122 (168)
                      .|+...+.+|++++|.|.....   ..-.+.|++....-               ...+..+  ....+..+|.|.+++.+
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~~   84 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQD   84 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCcC
Confidence            4556778899999999986432   23457798743211               0112222  22345668999999999


Q ss_pred             CCeEEEEEEEeCCcceEEEEEEEEeeCC
Q psy12421        123 DSGEYKCVATNKHGTDETNCVVIVESEE  150 (168)
Q Consensus       123 d~G~Y~C~a~n~~g~~~~~~~l~v~~~p  150 (168)
                      |+|.|.|.+............|.|.+..
T Consensus        85 DsG~Y~C~v~~~~~~~~~~v~L~V~~~~  112 (116)
T d1xeda_          85 DSGRYKCGLGINSRGLSFDVSLEVLEHH  112 (116)
T ss_dssp             GCEEEEEEESCGGGCCEEEEEEEEECCC
T ss_pred             CCEEEEEEEEcCCCCceEeEEEEEECCC
Confidence            9999999886544344556677776543

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.51  E-value=5.3e-07  Score=53.70  Aligned_cols=69  Identities=17%  Similarity=0.295  Sum_probs=50.8

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EE---C----------CCCCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RE---L----------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~---~----------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +....+.+|++++|.|...+.....+.||+..  ..   +          ...++.....+....|.|.+++.+|+|.|.
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa~Yy   86 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGTDFTLTIDPVEADDTAIYF   86 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCCEEEeEECCcChhhCCCcc
Confidence            34567889999999999877666779999742  11   1          123445555556678999999999999999


Q ss_pred             EEEE
Q psy12421        129 CVAT  132 (168)
Q Consensus       129 C~a~  132 (168)
                      |.+.
T Consensus        87 Ca~~   90 (106)
T d1lk3l1          87 CQQS   90 (106)
T ss_dssp             EEEC
T ss_pred             cccc
Confidence            9654

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.50  E-value=1.6e-07  Score=56.12  Aligned_cols=73  Identities=21%  Similarity=0.281  Sum_probs=53.0

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~  124 (168)
                      +.+.|....+.+|++++|.|.........+.||+..  ..+             ...++..........|.|.+++.+|+
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Ds   83 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSGTDYSLTISNLEPEDI   83 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEETTEEEEECSCCCSCCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccCCEEEEEEeEeeecCC
Confidence            445677788899999999999877666679999742  111             01233333345566899999999999


Q ss_pred             eEEEEEEE
Q psy12421        125 GEYKCVAT  132 (168)
Q Consensus       125 G~Y~C~a~  132 (168)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d3cx5k1          84 ATYFCQHH   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             CcEEeeeC
Confidence            99999654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.49  E-value=1.4e-06  Score=52.72  Aligned_cols=78  Identities=21%  Similarity=0.336  Sum_probs=53.1

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc-CCCeeEEEeC--CEEC----------------CCCCeEEEe--cCCEEEEEEcc
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKG--NREL----------------SKRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~--~~~~----------------~~~~~~~~~--~~~~~~l~i~~  118 (168)
                      +...+....+.+|++++|.|..... ....+.||+.  +..+                ...++....  ......|.|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            3455667788999999999997653 4678899973  1111                012333322  23445799999


Q ss_pred             CCCCCCeEEEEEEEeCCcc
Q psy12421        119 CKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~  137 (168)
                      ++.+|+|.|.|.+....+.
T Consensus        83 ~~~~Dsg~YyCa~~~~~~~  101 (116)
T d1tvda_          83 VRTEDSATYYCAFTLPPPT  101 (116)
T ss_dssp             CCGGGCEEEEEEEECTTTT
T ss_pred             ccccccccceeeEecCCCC
Confidence            9999999999987755433

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.48  E-value=3.8e-07  Score=55.19  Aligned_cols=74  Identities=14%  Similarity=0.188  Sum_probs=50.9

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEE--ecCCEEEEEEccCCCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMS--YSDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~--~~~~~~~l~i~~~~~~d~  124 (168)
                      +.+....+.+|++++|.|.........+.||+..  ..+             ...++...  .......|.|.+++.+|+
T Consensus         6 Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Ds   85 (115)
T d1lp9e1           6 QTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLSDS   85 (115)
T ss_dssp             ECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGGGC
T ss_pred             cCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccccC
Confidence            4455567889999999999887778889999842  111             01112221  122234699999999999


Q ss_pred             eEEEEEEEeCC
Q psy12421        125 GEYKCVATNKH  135 (168)
Q Consensus       125 G~Y~C~a~n~~  135 (168)
                      |.|.|.+....
T Consensus        86 g~YyCa~~~~~   96 (115)
T d1lp9e1          86 ALYYCALFLAS   96 (115)
T ss_dssp             EEEEEEEEECS
T ss_pred             ccceEEEEcCC
Confidence            99999876543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.48  E-value=3.1e-07  Score=54.45  Aligned_cols=69  Identities=25%  Similarity=0.443  Sum_probs=49.9

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +..+.+|++++|.|.........+.||+..  ..+             ...++..........|.|.+++.+|+|.|.|.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~YyCA   86 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSGTTVTLTISGVQAEDEADYYCQ   86 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCEEEEEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCCCccCceEcCcchhHCceEEee
Confidence            466789999999998776666678999742  111             01223444455567899999999999999997


Q ss_pred             EEeC
Q psy12421        131 ATNK  134 (168)
Q Consensus       131 a~n~  134 (168)
                      +...
T Consensus        87 ~~~~   90 (103)
T d8faba1          87 AWDN   90 (103)
T ss_dssp             EEET
T ss_pred             ecCC
Confidence            6654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.47  E-value=2.5e-07  Score=55.47  Aligned_cols=73  Identities=19%  Similarity=0.324  Sum_probs=50.1

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EECC-------C------CCeEE--EecCCEEEEEEccCCCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--RELS-------K------RDYSM--SYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~~-------~------~~~~~--~~~~~~~~l~i~~~~~~d  123 (168)
                      .+.+....+.+|++++|.|.........+.||+..  ..+.       .      .+...  ........|.|.++..+|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence            34566678889999999999876555678999742  1110       0      11111  122335579999999999


Q ss_pred             CeEEEEEEEe
Q psy12421        124 SGEYKCVATN  133 (168)
Q Consensus       124 ~G~Y~C~a~n  133 (168)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (110)
T d1u3ha1          83 SATYFCAASA   92 (110)
T ss_dssp             CSEEEECCEE
T ss_pred             ceeEeeeecC
Confidence            9999998763

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.46  E-value=1.2e-06  Score=52.82  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=51.3

Q ss_pred             EEeecCCeEEecCCcEEEEEEEec-cCCCeeEEEeC--CEEC-------C-C------CC--eEEEecCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKG--NREL-------S-K------RD--YSMSYSDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~--~~~~-------~-~------~~--~~~~~~~~~~~l~i~~~~  120 (168)
                      +...+....+.+|++++|.|.... .....+.||+.  +..+       . .      .+  ...........|.|.++.
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            344556677899999999998654 34556899983  2211       0 0      01  112223446679999999


Q ss_pred             CCCCeEEEEEEEeCCc
Q psy12421        121 PEDSGEYKCVATNKHG  136 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~g  136 (168)
                      .+|+|.|.|.+....+
T Consensus        83 ~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          83 VVDSAVYFCALSGFYN   98 (114)
T ss_dssp             GGGCEEEEEEEECSBT
T ss_pred             cccCCCceEeCCCCCC
Confidence            9999999998765543

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.46  E-value=1.1e-06  Score=53.39  Aligned_cols=75  Identities=21%  Similarity=0.375  Sum_probs=53.1

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC------------------CCCCeEEEe-cCCEEEEEEcc
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL------------------SKRDYSMSY-SDGVVSMEIID  118 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~------------------~~~~~~~~~-~~~~~~l~i~~  118 (168)
                      +.+.+....+.+|++++|.|...+.....+.||+.  +..+                  ...++.... ......|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            44566667889999999999987777788999984  1110                  012233322 23345799999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12421        119 CKPEDSGEYKCVATNK  134 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~  134 (168)
                      ++.+|+|.|.|.+...
T Consensus        84 ~~~~Dsa~YyCa~~~~   99 (118)
T d2ij0c1          84 AHPEDSGFYVCSALAG   99 (118)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cccccCceEEEEEecC
Confidence            9999999999987643

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.45  E-value=1.2e-06  Score=52.76  Aligned_cols=69  Identities=25%  Similarity=0.335  Sum_probs=49.6

Q ss_pred             CeEEecCCcEEEEEEEeccC--CCeeEEEeCCE--EC-------------CCCCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKP--PPTVKWYKGNR--EL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~~--~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +..+.+|++++|.|...+..  ...+.||+...  .+             ...++..........|.|.+++.+|++.|.
T Consensus         9 s~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsA~Yy   88 (114)
T d2rhea_           9 SASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSGTSASLAISGLESEDEADYY   88 (114)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             cEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCCCeeeeEecccCcccCceEE
Confidence            46778899999999987643  56789997521  11             012344444456678999999999999999


Q ss_pred             EEEEeC
Q psy12421        129 CVATNK  134 (168)
Q Consensus       129 C~a~n~  134 (168)
                      |.+...
T Consensus        89 CA~~~~   94 (114)
T d2rhea_          89 CAAWND   94 (114)
T ss_dssp             EEEEET
T ss_pred             EeecCC
Confidence            987643

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.45  E-value=1e-06  Score=52.86  Aligned_cols=75  Identities=17%  Similarity=0.230  Sum_probs=52.4

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc-C---CCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK-P---PPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~-p---~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~  120 (168)
                      +++.|....+.+|++++|.|..+.. .   ...+.||+.  +..+             ...++.....+....|.|.+++
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~~~~~L~I~~~~   83 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSGTDFTLNIHPVE   83 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCC
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCCCchhccccccc
Confidence            3456667888999999999987542 1   234889984  2211             1234555555566789999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12421        121 PEDSGEYKCVATNK  134 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~  134 (168)
                      .+|++.|.|.+...
T Consensus        84 ~~DsA~YyCa~~~~   97 (111)
T d2gsia1          84 EEDAATYYCSHIRE   97 (111)
T ss_dssp             GGGCEEEEEEECSS
T ss_pred             ccCCceEEEEECCC
Confidence            99999999976543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.42  E-value=1.5e-06  Score=52.09  Aligned_cols=73  Identities=21%  Similarity=0.291  Sum_probs=51.4

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEECC-------------CCCeEE--EecCCEEEEEEccCCCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NRELS-------------KRDYSM--SYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~~-------------~~~~~~--~~~~~~~~l~i~~~~~~d  123 (168)
                      ...+....+.+|++++|.|.........+.||+.  +..+.             ..++..  ........|.|.+++.+|
T Consensus         4 ~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   83 (111)
T d1bd2d1           4 KQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPGD   83 (111)
T ss_dssp             ECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGGG
T ss_pred             EccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCcccc
Confidence            3455567788999999999988777778899974  21110             112222  222446689999999999


Q ss_pred             CeEEEEEEEe
Q psy12421        124 SGEYKCVATN  133 (168)
Q Consensus       124 ~G~Y~C~a~n  133 (168)
                      +|.|.|.+..
T Consensus        84 sa~YyCa~~~   93 (111)
T d1bd2d1          84 SAVYFCAAME   93 (111)
T ss_dssp             CEEEEEEEES
T ss_pred             cEEEEeeccC
Confidence            9999997764

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.41  E-value=1.6e-06  Score=51.87  Aligned_cols=73  Identities=19%  Similarity=0.339  Sum_probs=50.8

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC-------C---------CCCe-EEEecCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL-------S---------KRDY-SMSYSDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~-------~---------~~~~-~~~~~~~~~~l~i~~~~  120 (168)
                      +.+.|....+.+|++++|.|...+ ....+.||+.  +..+       .         ...+ ..........|.|.++.
T Consensus         4 V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (110)
T d2aq2a1           4 VTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESAT   82 (110)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSCC
T ss_pred             EEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCCC
Confidence            455677788899999999998764 4567999984  2111       0         0111 22223445679999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12421        121 PEDSGEYKCVATN  133 (168)
Q Consensus       121 ~~d~G~Y~C~a~n  133 (168)
                      .+|+|.|.|.+..
T Consensus        83 ~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          83 PSQTSVYFCASGG   95 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             HhhCEEEEEeeCC
Confidence            9999999997664

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.41  E-value=6e-07  Score=53.65  Aligned_cols=71  Identities=20%  Similarity=0.264  Sum_probs=50.6

Q ss_pred             eecCCeEEecCCcEEEEEEEecc-CCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      +.|....+.+|++++|.|..... ....+.||+..  ..+             ...++..........|.|.+++.+|+|
T Consensus         6 Q~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~~~~~L~I~~~~~~Dsa   85 (108)
T d2fx7l1           6 QSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSGTDFTLTISRLEPEDFA   85 (108)
T ss_dssp             CSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCS
T ss_pred             eeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCCCEEEEEehHheecccE
Confidence            45566778899999999987643 34568899742  211             112344444556678999999999999


Q ss_pred             EEEEEEE
Q psy12421        126 EYKCVAT  132 (168)
Q Consensus       126 ~Y~C~a~  132 (168)
                      .|.|.+.
T Consensus        86 ~YyCa~~   92 (108)
T d2fx7l1          86 VYYCQQY   92 (108)
T ss_dssp             EEEEEEC
T ss_pred             EEeeecC
Confidence            9999765

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.41  E-value=1.2e-06  Score=52.79  Aligned_cols=74  Identities=24%  Similarity=0.399  Sum_probs=52.1

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc--CCCeeEEEeC--CEE----CC-CCCeEEEe--cCCEEEEEEccCCCCCCeEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKG--NRE----LS-KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~--~~~----~~-~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +.+.|....+.+|++++|.|..++.  ....+.||+.  +..    +. ..++....  ......|.|.+++.+|+|.|.
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   82 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGSKSFSLRISDLRVEDSGTYK   82 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCCCceeeeecccccCCcceEe
Confidence            4566777888999999999998753  3456899973  221    11 12333222  233457999999999999999


Q ss_pred             EEEEe
Q psy12421        129 CVATN  133 (168)
Q Consensus       129 C~a~n  133 (168)
                      |.+..
T Consensus        83 Ca~~~   87 (113)
T d1vesa_          83 CQAFY   87 (113)
T ss_dssp             EEEEE
T ss_pred             eeeec
Confidence            98764

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.40  E-value=4.7e-07  Score=54.70  Aligned_cols=71  Identities=20%  Similarity=0.354  Sum_probs=48.9

Q ss_pred             eecCCeEEecCCcEEEEEEEec-cCCCeeEEEeCC-----EEC------------------CCCCeEEEe--cCCEEEEE
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGN-----REL------------------SKRDYSMSY--SDGVVSME  115 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~-----~~~------------------~~~~~~~~~--~~~~~~l~  115 (168)
                      ..+....+.+|++++|.|...+ .....+.||+..     +.+                  ...++....  ......|.
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFLS   82 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEEE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEEe
Confidence            4566778899999999999876 445678999752     111                  011222221  12244799


Q ss_pred             EccCCCCCCeEEEEEEE
Q psy12421        116 IIDCKPEDSGEYKCVAT  132 (168)
Q Consensus       116 i~~~~~~d~G~Y~C~a~  132 (168)
                      |.+++.+|+|.|.|.+.
T Consensus        83 I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          83 IMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ecccCCCCCcEEEEeEc
Confidence            99999999999999765

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.40  E-value=8.9e-07  Score=53.05  Aligned_cols=71  Identities=13%  Similarity=0.198  Sum_probs=47.7

Q ss_pred             cCCeEEecCCcEEEEEEEecc-CCCeeEEEeC--CEECC-------------CCCeEEEecCCEEEEEEccCCCCCCeEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGK-PPPTVKWYKG--NRELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~-p~p~i~W~~~--~~~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      +.+..+.+|++++|.|...+. ....+.||+.  +..+.             ...+..........|.|.+++.+|+|.|
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~Y   84 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASLIITEDRKSSTLILPHATLRDTAVY   84 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEEEECTTCSEEEEEESSCCGGGCEEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceecccccceeeecccCCeeeehhcccccCCceEE
Confidence            345778899999999987653 3456899984  22110             0111222233456799999999999999


Q ss_pred             EEEEEeC
Q psy12421        128 KCVATNK  134 (168)
Q Consensus       128 ~C~a~n~  134 (168)
                      .|.+...
T Consensus        85 yCa~~~~   91 (110)
T d2esvd1          85 YCIVVRS   91 (110)
T ss_dssp             EEEEEES
T ss_pred             EEEEeCC
Confidence            9987643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=4.2e-07  Score=53.21  Aligned_cols=66  Identities=23%  Similarity=0.344  Sum_probs=45.8

Q ss_pred             EEecCCcEEEEEEEeccCCCeeEEEeCCEEC--C---------C----CCeEEE---ecCCEEEEEEccCCCCCCeEEEE
Q psy12421         68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNREL--S---------K----RDYSMS---YSDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~--~---------~----~~~~~~---~~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      ...+|++++|.|.........+.|++.....  .         .    .+....   ...+..+|.|.+++.+|+|.|.|
T Consensus         5 ~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~C   84 (97)
T d2nxyb1           5 LGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYIC   84 (97)
T ss_dssp             EEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEEE
T ss_pred             EEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEEE
Confidence            4568999999999877777889999854311  0         0    011100   02234469999999999999999


Q ss_pred             EEEe
Q psy12421        130 VATN  133 (168)
Q Consensus       130 ~a~n  133 (168)
                      .+.+
T Consensus        85 ~v~~   88 (97)
T d2nxyb1          85 EVED   88 (97)
T ss_dssp             EETT
T ss_pred             EEec
Confidence            9854

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.39  E-value=1.6e-06  Score=51.41  Aligned_cols=71  Identities=20%  Similarity=0.218  Sum_probs=50.4

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC-------------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      ++.|....+.+|++++|.|.... ....+.||+...  .+             ....+.....+....|.|.+++.+|+|
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~L~I~~~~~~Dsa   82 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASS-SVNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSGTSYSLTISSMETEDAA   82 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESS-CCSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETTEEEEEESSCCGGGCE
T ss_pred             eCcCCeEEECCCCCEEEEEEeCC-CCCccEEEEeeccCceEEEEecccccCCCcCceEEEecCCCEEEEEecccCcccCC
Confidence            45666778899999999998654 344578997421  11             112344444556678999999999999


Q ss_pred             EEEEEEE
Q psy12421        126 EYKCVAT  132 (168)
Q Consensus       126 ~Y~C~a~  132 (168)
                      .|.|.+.
T Consensus        83 ~YyCa~~   89 (104)
T d1yqvl1          83 TYYCQQW   89 (104)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEec
Confidence            9999653

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.38  E-value=4.8e-06  Score=49.92  Aligned_cols=75  Identities=21%  Similarity=0.362  Sum_probs=51.3

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc--CCCeeEEEeCC--E----ECCC-CCeEEEe--cCCEEEEEEccCCCCCCeEEE
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK--PPPTVKWYKGN--R----ELSK-RDYSMSY--SDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~--~----~~~~-~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      +.+.|....+..|++++|.|...+.  ....+.||+..  .    .+.. .++....  ......|.|.+++.+|+|.|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Dsa~Yy   81 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGSKSFSLRINDLTVEDGGTYR   81 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTTTEEEEEECSCCGGGCEEEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCCceeeeEecCCcCccCEEEe
Confidence            3456667788899999999988653  35678999732  1    1211 2232222  223557999999999999999


Q ss_pred             EEEEeC
Q psy12421        129 CVATNK  134 (168)
Q Consensus       129 C~a~n~  134 (168)
                      |.+...
T Consensus        82 CA~~~~   87 (112)
T d1sq2n_          82 CGLGVA   87 (112)
T ss_dssp             EEECBT
T ss_pred             EEEecC
Confidence            976644

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.36  E-value=1.4e-06  Score=52.30  Aligned_cols=74  Identities=18%  Similarity=0.232  Sum_probs=50.5

Q ss_pred             EeecCCeEEecCCcEEEEEEEecc----CCCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGK----PPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~----p~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      ++.|....+.+|++++|.|.....    ....+.||+.  +..+             ...++..........|.|.+++.
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   84 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSRTDFTLIIDPVEA   84 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSSSEEEEEESSCCG
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCCCEEEEEEccccc
Confidence            345666778899999999987532    2234899974  2211             01233444445567899999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12421        122 EDSGEYKCVATNK  134 (168)
Q Consensus       122 ~d~G~Y~C~a~n~  134 (168)
                      +|+|.|.|.+.+.
T Consensus        85 ~Dsa~YyCa~~~~   97 (111)
T d1j05a_          85 DDVATYYCQQTNE   97 (111)
T ss_dssp             GGCEEEEEEECSS
T ss_pred             ccCccEEEeecCC
Confidence            9999999976543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.34  E-value=2.9e-06  Score=50.98  Aligned_cols=73  Identities=15%  Similarity=0.248  Sum_probs=50.8

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc------CCCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEcc
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK------PPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIID  118 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~------p~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~  118 (168)
                      +.+.|....+.+|++++|.|...+.      ....+.||+.  +..+             ....+.....+....|.|.+
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~~~~~L~I~~   83 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSGTDFTLTITS   83 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEETTEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCCCeEeEEecc
Confidence            3456677888999999999987542      1234889974  2211             11234444455667899999


Q ss_pred             CCCCCCeEEEEEEE
Q psy12421        119 CKPEDSGEYKCVAT  132 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~  132 (168)
                      ++.+|+|.|.|.+.
T Consensus        84 l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          84 VQAEDLAVYYCKQS   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCCCeEEEeccc
Confidence            99999999999754

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.33  E-value=2e-06  Score=51.24  Aligned_cols=70  Identities=21%  Similarity=0.442  Sum_probs=50.7

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      |.+..+.+|++++|.|.........+.||+.  +..+             ...++.....+....|.|.+++.+|+|.|.
T Consensus         6 P~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~~~~~L~I~~l~~~Dsa~Yy   85 (108)
T d1nfde1           6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSGTTATLTISGAQPEDEAAYY   85 (108)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEETTEEEEEETTCCGGGCSEEE
T ss_pred             CCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCCCEeeeeEcCccccCCceEE
Confidence            4557788999999999876555567899973  2111             112345555556678999999999999999


Q ss_pred             EEEEe
Q psy12421        129 CVATN  133 (168)
Q Consensus       129 C~a~n  133 (168)
                      |.+..
T Consensus        86 CA~~~   90 (108)
T d1nfde1          86 CLSSY   90 (108)
T ss_dssp             EEEEE
T ss_pred             EEeec
Confidence            97764

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.33  E-value=3.5e-06  Score=50.35  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=50.1

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCC---eeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      +.+..+.+|++++|.|..++....   .+.||+.  +..+             ...++..........|.|.++..+|+|
T Consensus         7 ~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~~~~~L~I~~~~~~Dsa   86 (110)
T d1oaql_           7 ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIGNKAALTITGAQTEDEA   86 (110)
T ss_dssp             CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEETTEEEEEEESCCGGGCE
T ss_pred             CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccccceeeecCCCCccccE
Confidence            345678899999999998753322   3889973  2111             123455555566778999999999999


Q ss_pred             EEEEEEEeC
Q psy12421        126 EYKCVATNK  134 (168)
Q Consensus       126 ~Y~C~a~n~  134 (168)
                      .|.|.+...
T Consensus        87 ~YyCa~~~~   95 (110)
T d1oaql_          87 IYFCALWYS   95 (110)
T ss_dssp             EEEEEEEET
T ss_pred             eEEEEcccC
Confidence            999987643

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.32  E-value=2.7e-06  Score=51.04  Aligned_cols=74  Identities=18%  Similarity=0.247  Sum_probs=51.0

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC-----CCeeEEEeC--CEEC-------------CCCCeEEEecCCEEEEEEccC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP-----PPTVKWYKG--NREL-------------SKRDYSMSYSDGVVSMEIIDC  119 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p-----~p~i~W~~~--~~~~-------------~~~~~~~~~~~~~~~l~i~~~  119 (168)
                      +++.|....+.+|++++|.|...+..     ..-+.||+.  |..+             ...++.....+....|.|.++
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~~~~~L~I~~~   83 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSGTDFTLKISRV   83 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEETTEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCCCEEEEEECcc
Confidence            34556678899999999999875432     245889874  2111             123344444555668999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      +.+|++.|.|...+
T Consensus        84 ~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          84 EAEDLGVYYCWQGT   97 (112)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccCcCEeEEEEcCC
Confidence            99999999996543

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.32  E-value=3.1e-06  Score=50.85  Aligned_cols=74  Identities=19%  Similarity=0.244  Sum_probs=51.7

Q ss_pred             EEeecCCeEEecCCcEEEEEEEecc-----CCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGK-----PPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDC  119 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~-----p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~  119 (168)
                      +.+.|....+.+|++++|.|...+.     ....+.||+..  ..+             ...++..........|.|.++
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~   84 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSGTDFTLKISRV   84 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECSSEEEEEESSC
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccCCcccCccCCC
Confidence            3455667888999999999997643     23568999742  111             112344444455678999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      ..+|++.|.|...+
T Consensus        85 ~~~DsavYyCa~~~   98 (113)
T d1n4xl_          85 EAEDLGIYYCFQGS   98 (113)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CcccCEEEEEEECC
Confidence            99999999996543

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.32  E-value=2.1e-06  Score=51.56  Aligned_cols=72  Identities=19%  Similarity=0.265  Sum_probs=50.4

Q ss_pred             cCCeEEecCCcEEEEEEEeccC---CCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCe
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP---PPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p---~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G  125 (168)
                      |.+..+.+|++++|.|...+..   ...+.||+..  ..+             ....+..........|.|.+++.+|+|
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   86 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSGNSASLTISGLQAEDEA   86 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEECSCCGGGCE
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCCCEeeEEeCcCccccCE
Confidence            4557788999999999976532   3458999742  111             012334444556678999999999999


Q ss_pred             EEEEEEEeCC
Q psy12421        126 EYKCVATNKH  135 (168)
Q Consensus       126 ~Y~C~a~n~~  135 (168)
                      .|.|.+.+..
T Consensus        87 ~YyCa~~~~~   96 (112)
T d1lgva1          87 DYYCSSYDGS   96 (112)
T ss_dssp             EEEEEEECSS
T ss_pred             EEEEeeecCC
Confidence            9999876543

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.32  E-value=7.4e-07  Score=53.82  Aligned_cols=72  Identities=19%  Similarity=0.256  Sum_probs=48.4

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC-------CCC-------CeEE--EecCCEEEEEEccCCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL-------SKR-------DYSM--SYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~-------~~~-------~~~~--~~~~~~~~l~i~~~~~~d  123 (168)
                      +.+....+.+|++++|.|.........+.||+.  +..+       ...       ....  ........|.|.++..+|
T Consensus         5 Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   84 (115)
T d1i9ea_           5 QPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWSD   84 (115)
T ss_dssp             CCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGGG
T ss_pred             cCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccccc
Confidence            344457788999999999987766778899973  2111       000       0111  111223469999999999


Q ss_pred             CeEEEEEEEe
Q psy12421        124 SGEYKCVATN  133 (168)
Q Consensus       124 ~G~Y~C~a~n  133 (168)
                      +|.|.|.+..
T Consensus        85 sg~YyCa~~~   94 (115)
T d1i9ea_          85 SAVYFCAVSG   94 (115)
T ss_dssp             CEEEEEEEEE
T ss_pred             cceecccccC
Confidence            9999997664

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.31  E-value=1.2e-06  Score=52.32  Aligned_cols=70  Identities=19%  Similarity=0.341  Sum_probs=50.4

Q ss_pred             CCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeEEEE
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      .+..+.+|++++|.|.........+.||+..  ..+             ...++..........|.|.+++.+|++.|.|
T Consensus         8 ~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~DsavYyC   87 (109)
T d1w72l1           8 PSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSGNMATLTISRVEAGDEADYYC   87 (109)
T ss_dssp             SEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTEEEEEESSCCGGGCEEEEE
T ss_pred             CeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCCCccceEEeeeccCCCEEEEE
Confidence            3467789999999998765555678999742  211             1123444445566789999999999999999


Q ss_pred             EEEeC
Q psy12421        130 VATNK  134 (168)
Q Consensus       130 ~a~n~  134 (168)
                      .+...
T Consensus        88 A~~~~   92 (109)
T d1w72l1          88 QVWDS   92 (109)
T ss_dssp             EEEET
T ss_pred             EecCC
Confidence            87654

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=2.2e-06  Score=51.47  Aligned_cols=76  Identities=22%  Similarity=0.357  Sum_probs=50.5

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC------CC-----CCeE---EEecCCEEEEEEccCCCCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL------SK-----RDYS---MSYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~------~~-----~~~~---~~~~~~~~~l~i~~~~~~d  123 (168)
                      +.+.+....+.+|++++|.|.... ....+.||+..  ..+      ..     ....   .........|.|.++..+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            345566778899999999999765 45578999842  110      00     0000   0112234579999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy12421        124 SGEYKCVATNKHG  136 (168)
Q Consensus       124 ~G~Y~C~a~n~~g  136 (168)
                      +|.|.|.+....+
T Consensus        83 sa~YyCa~~~~~~   95 (113)
T d1h5ba_          83 SGTYFCAAEASSG   95 (113)
T ss_dssp             CEEEEEEEECSSS
T ss_pred             CEEEEEEecCCCC
Confidence            9999998775443

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.30  E-value=1.8e-06  Score=52.00  Aligned_cols=74  Identities=20%  Similarity=0.357  Sum_probs=50.3

Q ss_pred             EeecCCeEEecCCcEEEEEEEec-cCCCeeEEEeCC--EEC---------C-----CCCeEEEe--cCCEEEEEEccCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSG-KPPPTVKWYKGN--REL---------S-----KRDYSMSY--SDGVVSMEIIDCKP  121 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~--~~~---------~-----~~~~~~~~--~~~~~~l~i~~~~~  121 (168)
                      .+.+....+.+|++++|.|.... .....+.||+..  ..+         .     ..++....  ......|.|.+++.
T Consensus         3 tQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1fo0a_           3 TQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQI   82 (115)
T ss_dssp             ECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             EccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCCc
Confidence            34555678899999999998754 445578999742  111         0     01222222  33456799999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12421        122 EDSGEYKCVATNK  134 (168)
Q Consensus       122 ~d~G~Y~C~a~n~  134 (168)
                      +|+|.|.|.+...
T Consensus        83 ~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          83 EDSAVYFCAMRGD   95 (115)
T ss_dssp             GGCEEEEEEEECC
T ss_pred             cccccccceeecC
Confidence            9999999987654

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.30  E-value=1.2e-06  Score=52.81  Aligned_cols=74  Identities=20%  Similarity=0.350  Sum_probs=50.6

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC------C-C-------CCeEEEe--cCCEEEEEEccCCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL------S-K-------RDYSMSY--SDGVVSMEIIDCKPE  122 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~------~-~-------~~~~~~~--~~~~~~l~i~~~~~~  122 (168)
                      .+.+....+.+|++++|.|.........+.||+..  ..+      . .       .++....  ......|.|.+++.+
T Consensus         4 tQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1j8hd1           4 TQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHMS   83 (115)
T ss_dssp             ECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCGG
T ss_pred             EcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeecccccc
Confidence            34455678889999999999887767789999842  111      0 0       1111111  122336999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12421        123 DSGEYKCVATNK  134 (168)
Q Consensus       123 d~G~Y~C~a~n~  134 (168)
                      |+|.|.|.+...
T Consensus        84 Dsa~YyCa~~~~   95 (115)
T d1j8hd1          84 DAAEYFCAVSES   95 (115)
T ss_dssp             GCEEEEEEEESS
T ss_pred             CCccceeeecCC
Confidence            999999988754

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.29  E-value=2.1e-06  Score=51.41  Aligned_cols=71  Identities=18%  Similarity=0.230  Sum_probs=49.9

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~  126 (168)
                      +.+..+.+|++++|.|...+..  ...+.||+..  ..+             ...++.....+....|.|.+++.+|+|.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~L~I~~~~~~Dsa~   86 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGTSATLGITGLQTGDEAD   86 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETTEEEEEESSCCGGGCSE
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCCEeeeEEeeeccccCcc
Confidence            3357788999999999876532  4468999741  111             0123444445566789999999999999


Q ss_pred             EEEEEEeC
Q psy12421        127 YKCVATNK  134 (168)
Q Consensus       127 Y~C~a~n~  134 (168)
                      |.|.+...
T Consensus        87 YyCA~~~~   94 (111)
T d1rzfl1          87 YYCGTWDS   94 (111)
T ss_dssp             EEEEEEET
T ss_pred             eEEeecCC
Confidence            99987654

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.29  E-value=3.9e-06  Score=49.15  Aligned_cols=76  Identities=11%  Similarity=0.163  Sum_probs=50.9

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +|.+...+ +..+..|.+++|.|... .+.-.+.|+|+|..................+.|..+...|+|.|.|.-...
T Consensus         6 kPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~~   81 (99)
T d1nkra2           6 KPSLSAQP-GPTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPATHGGTYRCFGSFH   81 (99)
T ss_dssp             CCEEEEES-CSEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEECEEEETTEEEEEEEEEECCSCEEEEEEEEET
T ss_pred             CCEEEEeC-CCcccCCCeEEEEECCC-CCccEEEEEECCCccccEEEccccCCccEEEEEeccccccCEEEEEEeecC
Confidence            56666665 45778999999999863 356678899998533221111122333445677888888999999976544

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.28  E-value=3.1e-06  Score=50.76  Aligned_cols=71  Identities=17%  Similarity=0.251  Sum_probs=49.1

Q ss_pred             eecCCeEEecCCcEEEEEEEecc-----CCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGK-----PPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKP  121 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~-----p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~  121 (168)
                      +.+....+.+|++++|.|..++.     ....+.||+..  ..+             ...++..........|.|.+++.
T Consensus         6 Q~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~~~~~L~Is~~~~   85 (112)
T d1mjul1           6 QAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSGTAFTLRISRVEA   85 (112)
T ss_dssp             CCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECSSEEEEEESSCCG
T ss_pred             ecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCCCEEEEEECCccc
Confidence            44556778899999999997653     24568998742  111             01234444455566899999999


Q ss_pred             CCCeEEEEEEE
Q psy12421        122 EDSGEYKCVAT  132 (168)
Q Consensus       122 ~d~G~Y~C~a~  132 (168)
                      +|++.|.|...
T Consensus        86 ~DsAvYyCa~~   96 (112)
T d1mjul1          86 EDVGVYYCLQH   96 (112)
T ss_dssp             GGCEEEEEEEC
T ss_pred             cCCceEEEEeC
Confidence            99999999543

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.27  E-value=2.2e-06  Score=51.40  Aligned_cols=71  Identities=11%  Similarity=0.226  Sum_probs=47.7

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC-CCeeEEEeC--CEECC-----------C--CCeEEEecCCEEEEEEccCCCCCCeE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP-PPTVKWYKG--NRELS-----------K--RDYSMSYSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p-~p~i~W~~~--~~~~~-----------~--~~~~~~~~~~~~~l~i~~~~~~d~G~  126 (168)
                      .+....+.+|++++|.|...+.. ...+.||+.  +..+.           .  .++..........|.|.++..+|+|.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~Dsa~   83 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAEDRKSSTLILHRATLRDAAV   83 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTTSSEEEEEESSCCGGGCEE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeecccCCeeEEEEeeccccccee
Confidence            34456788999999999986533 456899984  22110           0  11222223345579999999999999


Q ss_pred             EEEEEEe
Q psy12421        127 YKCVATN  133 (168)
Q Consensus       127 Y~C~a~n  133 (168)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (112)
T d1kgcd1          84 YYCILPL   90 (112)
T ss_dssp             EEEECCC
T ss_pred             EeeeEec
Confidence            9997653

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=2.6e-06  Score=49.62  Aligned_cols=74  Identities=15%  Similarity=0.123  Sum_probs=51.8

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +|.+...+ +..+..|.+++|.|.......-.+.|+|+|......  ... ......+.|.+++..|+|.|.|.....
T Consensus         5 kP~Lsa~P-~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~--~~~-~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2           5 KPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ--HQS-GEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             CCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS--EEE-CSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             CCEEEEeC-CCccCCCCeEEEEEeCCCCCceEEEEEECCcccceE--EcC-CCcccEEEEeccccccCcEEEEEEEcC
Confidence            46666555 457889999999998533444578899998533221  111 223346999999999999999987654

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.25  E-value=3.5e-06  Score=48.87  Aligned_cols=63  Identities=24%  Similarity=0.493  Sum_probs=44.4

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCC--EE---C---------CCCCeEEE--ecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGN--RE---L---------SKRDYSMS--YSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~--~~---~---------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      |++++|.|.........+.||+..  ..   +         ...++...  ......+|.|.+++.+|+|.|.|.+...
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEecC
Confidence            788999999888788889999832  11   0         11223222  2233567999999999999999987643

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.6e-05  Score=47.07  Aligned_cols=69  Identities=20%  Similarity=0.279  Sum_probs=46.2

Q ss_pred             eEEecCCcEEEEEEEecc--CCCeeEEEeCCE--E---C----------CCCCeEEE--ecCCEEEEEEccCCCCCCeEE
Q psy12421         67 RVMQVRQTCKLLCCLSGK--PPPTVKWYKGNR--E---L----------SKRDYSMS--YSDGVVSMEIIDCKPEDSGEY  127 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~--p~p~i~W~~~~~--~---~----------~~~~~~~~--~~~~~~~l~i~~~~~~d~G~Y  127 (168)
                      ....+|++++|.|.....  ....+.|++...  .   +          ...+..+.  ...+...|.|.+++.+|+|.|
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~DsG~Y   85 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDSGHY   85 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGCEEE
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCCEEE
Confidence            556789999999986543  234678987421  0   1          01222222  235567899999999999999


Q ss_pred             EEEEEeCC
Q psy12421        128 KCVATNKH  135 (168)
Q Consensus       128 ~C~a~n~~  135 (168)
                      .|.+....
T Consensus        86 ~C~v~~~~   93 (108)
T d1hkfa_          86 WCRIYRPS   93 (108)
T ss_dssp             EEEEECTT
T ss_pred             EEEEecCC
Confidence            99877543

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.24  E-value=7.9e-07  Score=54.03  Aligned_cols=72  Identities=22%  Similarity=0.232  Sum_probs=50.9

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------------CCCCeEEEecCCEEEEEEccCCCCCCeE
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------------SKRDYSMSYSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------------~~~~~~~~~~~~~~~l~i~~~~~~d~G~  126 (168)
                      +.|....+.+|++++|.|...+.....+.||+..  ..+             ...++..........|.|.+++.+|+|.
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~~~~~L~I~~~~~~Dsav   85 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSGTDYTLTISSLQPEDVAT   85 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEBTEEEEEECSCCGGGCSE
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCCCEEEEEcccCccCCCeE
Confidence            3455567889999999998776555678999842  111             0123333444555679999999999999


Q ss_pred             EEEEEEe
Q psy12421        127 YKCVATN  133 (168)
Q Consensus       127 Y~C~a~n  133 (168)
                      |.|.+..
T Consensus        86 YyCa~~~   92 (119)
T d1f3rb2          86 YFCYQYN   92 (119)
T ss_dssp             EEEEEES
T ss_pred             EEeeccC
Confidence            9997654

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.22  E-value=7e-06  Score=49.38  Aligned_cols=75  Identities=17%  Similarity=0.341  Sum_probs=50.2

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------C------CCCeEE--EecCCEEEEEEccCCCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------S------KRDYSM--SYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------~------~~~~~~--~~~~~~~~l~i~~~~~~d  123 (168)
                      .+.+....+.+|++++|.|...+. ...+.||+..  ..+       .      ...+..  ........|.|.++..+|
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            345666788999999999987653 4578999842  111       0      011111  112345679999999999


Q ss_pred             CeEEEEEEEeCCc
Q psy12421        124 SGEYKCVATNKHG  136 (168)
Q Consensus       124 ~G~Y~C~a~n~~g  136 (168)
                      +|.|.|.+....+
T Consensus        83 sa~YyCa~~~~~~   95 (115)
T d1ogad1          83 TGLYLCAGAGSQG   95 (115)
T ss_dssp             CEEEEEEEECTTS
T ss_pred             eeeEcccccCCCC
Confidence            9999998765433

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=8.4e-06  Score=47.10  Aligned_cols=71  Identities=13%  Similarity=0.251  Sum_probs=49.7

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      +|.+...+ +..+..|++++|.|... .+.-.+.|+|+|.....   ..........+.|.++...|+|.|.|...
T Consensus         4 kPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~---~~~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2           4 TPTLSVHP-GPEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHV---QRGYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             CCEEEEES-CSEEETTCEEEEEEECS-SSCSEEEEEEESSSCEE---EEEECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             CCEEEEeC-CCcccCCCcEEEEECCC-CCCCEEEEEECCCccce---eecCCCceeEEEecccChhcCceEEEEeE
Confidence            46666655 46677899999999863 45667888998743211   11222334469999999999999999743

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.18  E-value=6.2e-06  Score=49.43  Aligned_cols=73  Identities=19%  Similarity=0.304  Sum_probs=48.6

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------C---------CCCeEEEe-cCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------S---------KRDYSMSY-SDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------~---------~~~~~~~~-~~~~~~l~i~~~~  120 (168)
                      +.+.+....+.+|++++|.|... .....+.||+..  ..+       .         ...+.... ......|.|.++.
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~-~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQD-MDHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEES-SCCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEc-CCccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            34456667888999999999864 345678999742  111       0         01122211 2234579999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12421        121 PEDSGEYKCVATN  133 (168)
Q Consensus       121 ~~d~G~Y~C~a~n  133 (168)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (113)
T d1j8he1          82 TNQTSMYLCASSS   94 (113)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCcccEEeeEcc
Confidence            9999999998764

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=2.6e-06  Score=50.37  Aligned_cols=70  Identities=20%  Similarity=0.362  Sum_probs=46.8

Q ss_pred             eEEecCCcEEEEEEEeccC----CCeeEEEeCCEECC-------------CCCeEEEecCCEEEEEEccCCCCCCeEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKP----PPTVKWYKGNRELS-------------KRDYSMSYSDGVVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p----~p~i~W~~~~~~~~-------------~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C  129 (168)
                      ....+|+++.|.|......    ...+.|.+++..+.             ..+... ...+..+|.|.+++.+|+|.|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~-~~~g~~sL~I~~v~~~D~G~Y~C   82 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIF-DITNNLSIVILALRPSDEGTYEC   82 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEE-ESTTTTEEEECSCCGGGCEEEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeee-ccCCcEEEEECcCChHHCeEEEE
Confidence            4567899999999764322    23567777765431             011122 23334489999999999999999


Q ss_pred             EEEeCCcc
Q psy12421        130 VATNKHGT  137 (168)
Q Consensus       130 ~a~n~~g~  137 (168)
                      .+.+..+.
T Consensus        83 ~V~~~~~~   90 (105)
T d1dr9a1          83 VVLKYEKD   90 (105)
T ss_dssp             EEEECCTT
T ss_pred             EEEeCCCC
Confidence            99876444

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.16  E-value=1.7e-05  Score=47.33  Aligned_cols=71  Identities=20%  Similarity=0.376  Sum_probs=48.2

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-----------------CCCCeEEEec-CCEEEEEEccCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-----------------SKRDYSMSYS-DGVVSMEIIDCKP  121 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-----------------~~~~~~~~~~-~~~~~l~i~~~~~  121 (168)
                      +.|....+.+|++++|.|.... ....+.||+..  ..+                 ...++..... +....|.|.+++.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~~   82 (111)
T d2esve1           4 QFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAEL   82 (111)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCCG
T ss_pred             ECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCccc
Confidence            4566678889999999998544 35688999742  110                 0122322222 2245799999999


Q ss_pred             CCCeEEEEEEEe
Q psy12421        122 EDSGEYKCVATN  133 (168)
Q Consensus       122 ~d~G~Y~C~a~n  133 (168)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (111)
T d2esve1          83 EDSGVYFCASSQ   94 (111)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCceEEEeeeC
Confidence            999999997653

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.15  E-value=1.8e-05  Score=47.92  Aligned_cols=75  Identities=15%  Similarity=0.383  Sum_probs=51.6

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC-------------CCCCeEEEe--cCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL-------------SKRDYSMSY--SDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~-------------~~~~~~~~~--~~~~~~l~i~~~~  120 (168)
                      ++..+....+.+|++++|.|...+..  ...+.||+.  |+.+             ...++....  ......|.|.+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            34455667788999999999987643  457899973  2211             012333332  2345689999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12421        121 PEDSGEYKCVATNK  134 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~  134 (168)
                      .+|+|.|.|.....
T Consensus        84 ~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          84 ERDEGSYYCACDTL   97 (120)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             ccCCceeecCcccC
Confidence            99999999976653

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.15  E-value=6.9e-06  Score=49.15  Aligned_cols=72  Identities=18%  Similarity=0.387  Sum_probs=47.6

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEECC----------------CCCeEEE-ecCCEEEEEEccCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NRELS----------------KRDYSMS-YSDGVVSMEIIDCKP  121 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~~----------------~~~~~~~-~~~~~~~l~i~~~~~  121 (168)
                      .+.|....+.+|++++|.|.... ....+.||+.  ++.+.                ...+... .......|.|.++..
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAAP   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCCG
T ss_pred             EECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCCH
Confidence            44566678889999999998754 4567999973  21110                0111111 112234699999999


Q ss_pred             CCCeEEEEEEEe
Q psy12421        122 EDSGEYKCVATN  133 (168)
Q Consensus       122 ~d~G~Y~C~a~n  133 (168)
                      +|+|.|.|.+..
T Consensus        82 ~DsavYyCA~~~   93 (112)
T d2bnub1          82 SQTSVYFCASSY   93 (112)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             HHCEEEEEeecC
Confidence            999999997653

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.15  E-value=2.4e-05  Score=45.65  Aligned_cols=79  Identities=15%  Similarity=0.272  Sum_probs=47.3

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCCeE--EEecCCE-EEEEEccCCCCCCeEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRDYS--MSYSDGV-VSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~~--~~~~~~~-~~l~i~~~~~~d~G~Y~C  129 (168)
                      +.+|.+...+.. ....|+.++|.|.+.|. | ...+.|+++|..+......  ....++. .......+...+...|+|
T Consensus         2 ~~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (99)
T d1lk2b_           2 QKTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYAC   80 (99)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEE
T ss_pred             CCCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEE
Confidence            345666543322 23467889999999995 3 3478999999987653321  1222331 122223334556678999


Q ss_pred             EEEeC
Q psy12421        130 VATNK  134 (168)
Q Consensus       130 ~a~n~  134 (168)
                      .+...
T Consensus        81 ~V~H~   85 (99)
T d1lk2b_          81 RVKHD   85 (99)
T ss_dssp             EEECT
T ss_pred             EEEeC
Confidence            98765

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.14  E-value=9.6e-06  Score=48.55  Aligned_cols=72  Identities=21%  Similarity=0.265  Sum_probs=48.9

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC----------------CCCCeEEEe-cCCEEEEEEccCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL----------------SKRDYSMSY-SDGVVSMEIIDCKPE  122 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~----------------~~~~~~~~~-~~~~~~l~i~~~~~~  122 (168)
                      +.|....+.+|++++|.|...+ ....+.||+.  +..+                ...++.... ......|.|.+++.+
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLELG   82 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCGG
T ss_pred             eCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCcc
Confidence            4556678889999999998654 3567899983  2111                011222222 233457999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12421        123 DSGEYKCVATNK  134 (168)
Q Consensus       123 d~G~Y~C~a~n~  134 (168)
                      |+|.|.|.+...
T Consensus        83 Dsa~YyCA~~~~   94 (113)
T d2ntsp1          83 DSALYLCASSLA   94 (113)
T ss_dssp             GCEEEEEEEESS
T ss_pred             cceeeeeeeeCC
Confidence            999999987643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.14  E-value=1.6e-05  Score=48.34  Aligned_cols=70  Identities=17%  Similarity=0.412  Sum_probs=48.1

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC------------------CCCCeEEEe--cCCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL------------------SKRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~------------------~~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      +.+....+|++++|.|.++|..  ...+.||+.  ++.+                  ...++.+..  ......|.|.++
T Consensus         8 ~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i~~l   87 (123)
T d1hxmb1           8 QISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTIHNV   87 (123)
T ss_dssp             CSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEECSC
T ss_pred             CCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeeccccc
Confidence            3346677899999999998743  446889974  1111                  012344433  234567999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      ..+|++.|.|.+..
T Consensus        88 ~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          88 EKQDIATYYCALWE  101 (123)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCcEEEEeeeC
Confidence            99999999997654

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.14  E-value=5.3e-06  Score=50.23  Aligned_cols=71  Identities=15%  Similarity=0.302  Sum_probs=46.1

Q ss_pred             cCCeEEecCCcEEEEEEEecc-------CCCeeEEEeCCEECC------------------CCCeEEEe--cCCEEEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGK-------PPPTVKWYKGNRELS------------------KRDYSMSY--SDGVVSMEI  116 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~-------p~p~i~W~~~~~~~~------------------~~~~~~~~--~~~~~~l~i  116 (168)
                      +.+..+.+|+++.|.|.....       ....+.|++......                  ..++.+..  ..+..+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            445778899999999987421       123567887643210                  01222211  224557999


Q ss_pred             ccCCCCCCeEEEEEEEeC
Q psy12421        117 IDCKPEDSGEYKCVATNK  134 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999998754

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=5.5e-06  Score=49.26  Aligned_cols=68  Identities=15%  Similarity=0.330  Sum_probs=40.7

Q ss_pred             eEEecCCcEEEEEEEeccCC---CeeEEE--eCCEEC----------C---CCCe--EEEecCCEEEEEEccCCCCCCeE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPP---PTVKWY--KGNREL----------S---KRDY--SMSYSDGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~---p~i~W~--~~~~~~----------~---~~~~--~~~~~~~~~~l~i~~~~~~d~G~  126 (168)
                      ..+..|+++.|.|.....+.   ..+.|+  ++....          .   ...+  ......+..+|.|.+++.+|+|.
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~~~sL~I~~v~~~D~G~   83 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSDSWTLRLHNLQIKDKGL   83 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETTTTEEEECSCCGGGCEE
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCCeEEEEECCCChhHCEE
Confidence            45678999999998754332   223443  322111          0   0111  11112223379999999999999


Q ss_pred             EEEEEEeC
Q psy12421        127 YKCVATNK  134 (168)
Q Consensus       127 Y~C~a~n~  134 (168)
                      |.|.+...
T Consensus        84 Y~C~V~~~   91 (110)
T d1ncna_          84 YQCIIHHK   91 (110)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99998644

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.13  E-value=1.7e-05  Score=47.72  Aligned_cols=70  Identities=14%  Similarity=0.183  Sum_probs=45.9

Q ss_pred             cCCeEEecCCcEEEEEEEeccCCC---eeEEEeC--CEEC---------------CCCC-eEEEecCCEEEEEEccCCCC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKG--NREL---------------SKRD-YSMSYSDGVVSMEIIDCKPE  122 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~--~~~~---------------~~~~-~~~~~~~~~~~l~i~~~~~~  122 (168)
                      +....+..|++++|.|.......+   .+.||+.  ++.+               .... ...........|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            334566789999999997643332   3779984  2211               0111 12233445668999999999


Q ss_pred             CCeEEEEEEEe
Q psy12421        123 DSGEYKCVATN  133 (168)
Q Consensus       123 d~G~Y~C~a~n  133 (168)
                      |+|.|.|.+..
T Consensus        86 Dsa~YyCa~~~   96 (117)
T d1dqta_          86 DTGLYLCKVEL   96 (117)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCEeEEEEEec
Confidence            99999998764

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.12  E-value=3.7e-06  Score=50.31  Aligned_cols=72  Identities=21%  Similarity=0.317  Sum_probs=49.4

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC-------------CCCCeEEEe--cCCEEEEEEccCCCCC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL-------------SKRDYSMSY--SDGVVSMEIIDCKPED  123 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~-------------~~~~~~~~~--~~~~~~l~i~~~~~~d  123 (168)
                      .|.+..+.+|++++|.|...+..  .-.+.||+..  +.+             ...++....  ......|.|.+++.+|
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~D   85 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTED   85 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGGG
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCccc
Confidence            35567788999999999987643  3358999742  111             112233322  3456689999999999


Q ss_pred             CeEEEEEEEeC
Q psy12421        124 SGEYKCVATNK  134 (168)
Q Consensus       124 ~G~Y~C~a~n~  134 (168)
                      ++.|.|.+.+.
T Consensus        86 sa~YyCA~~~~   96 (111)
T d1cd0a_          86 EADYYCQSYDA   96 (111)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcEEEEeeccC
Confidence            99999986653

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.12  E-value=6.2e-06  Score=49.35  Aligned_cols=71  Identities=20%  Similarity=0.285  Sum_probs=47.8

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-----------------CCCCeEEEe-cCCEEEEEEccCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-----------------SKRDYSMSY-SDGVVSMEIIDCKP  121 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-----------------~~~~~~~~~-~~~~~~l~i~~~~~  121 (168)
                      +.|....+.+|++++|.|.... ....+.||+..  +.+                 ...++.... ......|.|.+++.
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (112)
T d1kgce1           4 QSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQQ   82 (112)
T ss_dssp             EECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCCG
T ss_pred             ECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCCc
Confidence            4566678889999999998543 45689999842  111                 011222221 22345799999999


Q ss_pred             CCCeEEEEEEEe
Q psy12421        122 EDSGEYKCVATN  133 (168)
Q Consensus       122 ~d~G~Y~C~a~n  133 (168)
                      +|+|.|.|.+.-
T Consensus        83 ~Dsa~YyCa~~~   94 (112)
T d1kgce1          83 EDSAVYLCASSL   94 (112)
T ss_dssp             GGCEEEEEEEES
T ss_pred             CCCEEEEEeeeC
Confidence            999999997753

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=1.7e-05  Score=46.40  Aligned_cols=80  Identities=19%  Similarity=0.262  Sum_probs=48.3

Q ss_pred             cCCCeEEeecCCeEEecCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCC--eEEEecCCE-EEEEEccCCCCCCeEEEE
Q psy12421         55 ESAPNFTFLLRPRVMQVRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRD--YSMSYSDGV-VSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        55 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~--~~~~~~~~~-~~l~i~~~~~~d~G~Y~C  129 (168)
                      ..+|.+...+.. .+..|...+|.|.+.|. | ...+.|.++|..+....  ......++. .......+...+.+.|+|
T Consensus         3 ~~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC   81 (100)
T d1k5nb_           3 QRTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYAC   81 (100)
T ss_dssp             CBCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEE
T ss_pred             cCCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEE
Confidence            456666543322 23568888999999995 4 33789999999885421  112223332 122233344556778999


Q ss_pred             EEEeCC
Q psy12421        130 VATNKH  135 (168)
Q Consensus       130 ~a~n~~  135 (168)
                      .+....
T Consensus        82 ~V~H~s   87 (100)
T d1k5nb_          82 RVNHVT   87 (100)
T ss_dssp             EEECTT
T ss_pred             EEEeCC
Confidence            988653

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.10  E-value=8.4e-06  Score=48.61  Aligned_cols=74  Identities=16%  Similarity=0.293  Sum_probs=50.4

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCC--EEC-------C------CCCeEEEec--CCEEEEEEccCCCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGN--REL-------S------KRDYSMSYS--DGVVSMEIIDCKPED  123 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~--~~~-------~------~~~~~~~~~--~~~~~l~i~~~~~~d  123 (168)
                      .+.+....+.+|++++|.|.........+.||+..  ..+       .      ..++.....  .....|.|.++..+|
T Consensus         4 tQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~D   83 (110)
T d1ac6a_           4 TQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQESD   83 (110)
T ss_dssp             EECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcCC
Confidence            34556678889999999999877666789999842  111       0      112222211  224468999999999


Q ss_pred             CeEEEEEEEeC
Q psy12421        124 SGEYKCVATNK  134 (168)
Q Consensus       124 ~G~Y~C~a~n~  134 (168)
                      +|.|.|.+...
T Consensus        84 sa~YyCA~~~~   94 (110)
T d1ac6a_          84 SAVYYCALSGG   94 (110)
T ss_dssp             CEEEEEEEEET
T ss_pred             CcccceeecCC
Confidence            99999987654

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.09  E-value=5e-06  Score=49.87  Aligned_cols=74  Identities=22%  Similarity=0.315  Sum_probs=49.8

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC----------------CCCCeEEE-ecCCEEEEEEccCC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL----------------SKRDYSMS-YSDGVVSMEIIDCK  120 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~----------------~~~~~~~~-~~~~~~~l~i~~~~  120 (168)
                      +.+.|....+.+|++++|.|.... ....+.||+...  .+                ...++... ..+....|.|.+++
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSALE   82 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCSCC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecccC
Confidence            445666778889999999998643 356799998531  11                01122221 12334579999999


Q ss_pred             CCCCeEEEEEEEeC
Q psy12421        121 PEDSGEYKCVATNK  134 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~  134 (168)
                      .+|+|.|.|.+...
T Consensus        83 ~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          83 LEDSAMYFCASSLR   96 (113)
T ss_dssp             GGGCEEECEEEESS
T ss_pred             cCCceeEEEEeecC
Confidence            99999999976543

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.08  E-value=4.3e-06  Score=50.24  Aligned_cols=72  Identities=15%  Similarity=0.286  Sum_probs=47.6

Q ss_pred             eecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC-------C---------CCCeEEE-ecCCEEEEEEccCCCC
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL-------S---------KRDYSMS-YSDGVVSMEIIDCKPE  122 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~-------~---------~~~~~~~-~~~~~~~l~i~~~~~~  122 (168)
                      +.|....+.+|++++|.|... .....+.||+...  .+       .         ...+... .......|.|.++..+
T Consensus         4 QsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (114)
T d1ogae1           4 QSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQKN   82 (114)
T ss_dssp             CSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCSC
T ss_pred             EcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCcC
Confidence            345567888999999999975 3456899997421  11       0         0111111 1123346999999999


Q ss_pred             CCeEEEEEEEeC
Q psy12421        123 DSGEYKCVATNK  134 (168)
Q Consensus       123 d~G~Y~C~a~n~  134 (168)
                      |+|.|.|.+...
T Consensus        83 DSa~YyCa~~~~   94 (114)
T d1ogae1          83 PTAFYLCASSSR   94 (114)
T ss_dssp             CCEEEEEEEESS
T ss_pred             CceeEEEeeccC
Confidence            999999976643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.04  E-value=2e-05  Score=46.06  Aligned_cols=79  Identities=18%  Similarity=0.379  Sum_probs=47.6

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCCe---EEEecCC-EEEEEEccCCCCCCeEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRDY---SMSYSDG-VVSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~---~~~~~~~-~~~l~i~~~~~~d~G~Y~C  129 (168)
                      .||.+...+.. .+..|+..+|.|.+.|. | ...+.|+++|..+.....   .....++ ........+...+...|+|
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC   80 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDC   80 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEE
Confidence            35666554433 34568889999999995 3 457899999987753211   1122233 1122222334456678999


Q ss_pred             EEEeCC
Q psy12421        130 VATNKH  135 (168)
Q Consensus       130 ~a~n~~  135 (168)
                      .+....
T Consensus        81 ~V~H~s   86 (100)
T d1muja1          81 KVEHWG   86 (100)
T ss_dssp             EEECTT
T ss_pred             EEEECC
Confidence            998653

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.7e-05  Score=43.61  Aligned_cols=64  Identities=17%  Similarity=0.408  Sum_probs=43.2

Q ss_pred             cCCcEEEEEEEec-cCCCeeEEEeCCEECCCCCeEEEec--CC----EEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         71 VRQTCKLLCCLSG-KPPPTVKWYKGNRELSKRDYSMSYS--DG----VVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~p~i~W~~~~~~~~~~~~~~~~~--~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      .++.+.|.|.+.| .|.+.+.|++++..+..........  ++    .+.|.+.   ..+...|+|.+....-.
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v~---~~~~~~~tC~V~h~~l~   85 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFN---MTTNHSFMCLIKYGHLR   85 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEE---TTSCEEEEEEEEETTCC
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEcc---CCccceEEEEEEecCCC
Confidence            4677899999997 7989999999998775433222211  22    1234443   44678999999877544

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.98  E-value=2.7e-05  Score=46.85  Aligned_cols=70  Identities=14%  Similarity=0.193  Sum_probs=45.2

Q ss_pred             CCeEEecCCcEEEEEEEeccCCC---eeEEEeCC--EECC---------------CCCe-EEEecCCEEEEEEccCCCCC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPPP---TVKWYKGN--RELS---------------KRDY-SMSYSDGVVSMEIIDCKPED  123 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~~--~~~~---------------~~~~-~~~~~~~~~~l~i~~~~~~d  123 (168)
                      ....+..|.+++|.|.......+   .+.||+..  +.+.               ...+ .....+....|.|.+++.+|
T Consensus         7 ~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~D   86 (118)
T d1i8lc_           7 AVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRAMD   86 (118)
T ss_dssp             SEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCGGG
T ss_pred             CEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeeccccCC
Confidence            34556789999999997643333   48899742  1110               0000 11223345679999999999


Q ss_pred             CeEEEEEEEeC
Q psy12421        124 SGEYKCVATNK  134 (168)
Q Consensus       124 ~G~Y~C~a~n~  134 (168)
                      +|.|.|.+...
T Consensus        87 sa~YyCa~~~~   97 (118)
T d1i8lc_          87 TGLYICKVELM   97 (118)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEeEecc
Confidence            99999987653

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=1e-05  Score=48.42  Aligned_cols=68  Identities=19%  Similarity=0.301  Sum_probs=45.6

Q ss_pred             eEEecCCcEEEEEEEec--cCCCeeEEEeC--CEE---C---C----------CCCeEEEe--cCCEEEEEEccCCCCCC
Q psy12421         67 RVMQVRQTCKLLCCLSG--KPPPTVKWYKG--NRE---L---S----------KRDYSMSY--SDGVVSMEIIDCKPEDS  124 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g--~p~p~i~W~~~--~~~---~---~----------~~~~~~~~--~~~~~~l~i~~~~~~d~  124 (168)
                      ..+.+|++++|.|...+  .....+.|++.  +..   +   .          ..++.+..  ..+...|.|.+++.+|+
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~~~Ds   88 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQVEDS   88 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCCcccC
Confidence            55678999999998764  34557889974  211   1   0          01233322  34456799999999999


Q ss_pred             eEEEEEEEeC
Q psy12421        125 GEYKCVATNK  134 (168)
Q Consensus       125 G~Y~C~a~n~  134 (168)
                      |.|.|.+...
T Consensus        89 g~Y~Cav~~~   98 (113)
T d1smoa_          89 GLYQCVIYQP   98 (113)
T ss_dssp             EEEEEEECCT
T ss_pred             ceEEEEEECC
Confidence            9999976543

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=9e-05  Score=43.02  Aligned_cols=77  Identities=12%  Similarity=0.120  Sum_probs=47.3

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeE---EEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS---MSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~---~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      +|.+...+ +..+..|.+++|.|... ...-.+.++|++.........   .........+.|.+++..|+|.|+|.-..
T Consensus         4 kPsLsa~P-~~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~   81 (98)
T d1ugna2           4 KPTLSAQP-SPVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYD   81 (98)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEECS-SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEEC
T ss_pred             CCEEEeeC-CCccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEc
Confidence            46666666 45688999999999853 335566778877643221110   01112234699999999999999998764


Q ss_pred             CC
Q psy12421        134 KH  135 (168)
Q Consensus       134 ~~  135 (168)
                      ..
T Consensus        82 ~~   83 (98)
T d1ugna2          82 SN   83 (98)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.93  E-value=1.3e-05  Score=47.92  Aligned_cols=74  Identities=16%  Similarity=0.332  Sum_probs=48.5

Q ss_pred             EeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCE--EC-------C---------CCCeEEE-ecCCEEEEEEccCCC
Q psy12421         61 TFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNR--EL-------S---------KRDYSMS-YSDGVVSMEIIDCKP  121 (168)
Q Consensus        61 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~--~~-------~---------~~~~~~~-~~~~~~~l~i~~~~~  121 (168)
                      .+.|....+.+|++++|.|.... ....+.||+...  .+       .         ...+... .......|.|.+++.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            34566678889999999998653 456789998421  11       0         0111111 112234699999999


Q ss_pred             CCCeEEEEEEEeCC
Q psy12421        122 EDSGEYKCVATNKH  135 (168)
Q Consensus       122 ~d~G~Y~C~a~n~~  135 (168)
                      +|+|.|.|.+....
T Consensus        81 ~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          81 SHTSQYLCASSENI   94 (112)
T ss_dssp             TTCSEEEEEEECSS
T ss_pred             cccccEEEEEecCC
Confidence            99999999876543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.92  E-value=4.6e-05  Score=44.14  Aligned_cols=76  Identities=11%  Similarity=0.088  Sum_probs=49.7

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeE-EEecC-CEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYS-MSYSD-GVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~-~~~~~-~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +|.+...+ +..+..|.+++|.|... .....+.++|++..-...... ..... ....+.|.+++..|+|.|.|.-...
T Consensus         2 KPsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1           2 KPSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             CCEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             CCEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            46666555 57788999999999864 345677888876422110000 11111 1235999999999999999987644

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.90  E-value=0.0001  Score=44.47  Aligned_cols=71  Identities=18%  Similarity=0.273  Sum_probs=46.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C----C----------CCCeEEEe--cCCEEEEEEccC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L----S----------KRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~----~----------~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      .+.......|++++|.|...+..  ...+.||+..  ..   +    .          ..++....  ......|.|.++
T Consensus         7 ~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I~~l   86 (120)
T d1ypzf1           7 PEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTIYSL   86 (120)
T ss_dssp             SCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEECSC
T ss_pred             CCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccccccccccccccccc
Confidence            33446677899999999976643  4568999842  11   1    0          01122222  234567999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      ..+|++.|.|.+..
T Consensus        87 ~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          87 EEEDEAIYYCSYGE  100 (120)
T ss_dssp             CGGGCSEEEEEECC
T ss_pred             ccccceeEEEEEcC
Confidence            99999999997653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.9e-06  Score=49.45  Aligned_cols=76  Identities=13%  Similarity=0.114  Sum_probs=48.4

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +|.+...+. ..+..|++++|.|... .+.-.+.++|++..................+.|.+++..|+|.|.|.....
T Consensus         4 kP~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (96)
T d1ugna1           4 KPTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSD   79 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             CCEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccCCCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence            456655554 5678999999999853 445567778887532100000000111126999999999999999986543

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.89  E-value=2e-05  Score=46.95  Aligned_cols=72  Identities=21%  Similarity=0.230  Sum_probs=45.9

Q ss_pred             ecCCeEEecCCcEEEEEEEec---cC---CCeeEEEeCCEE----C---------C---CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSG---KP---PPTVKWYKGNRE----L---------S---KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g---~p---~p~i~W~~~~~~----~---------~---~~~~~~~~--~~~~~~l~i~~  118 (168)
                      .|....+.+|+.+.|.|....   .+   .-.+.|++....    +         .   ..++.+..  ..+..+|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            345677889999999999752   11   224557764221    0         0   11222211  23445799999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12421        119 CKPEDSGEYKCVATNK  134 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~  134 (168)
                      ++.+|+|.|.|.+...
T Consensus        86 v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             CChhHCEEEEEEEEeC
Confidence            9999999999998754

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=0.00011  Score=42.24  Aligned_cols=75  Identities=17%  Similarity=0.330  Sum_probs=44.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEec-cCC-CeeEEEeCCEECCCC----CeEEEecCC-EEEEEEccCCCCCCeEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKR----DYSMSYSDG-VVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~----~~~~~~~~~-~~~l~i~~~~~~d~G~Y~  128 (168)
                      .||.+...    ....++.++|.|.+.| .|. ..+.|+++|..+...    .......++ ........+...+...|+
T Consensus         3 vpP~V~v~----~~~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt   78 (94)
T d1de4a1           3 VPPLVKVT----HHVTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYT   78 (94)
T ss_dssp             BCCEEEEE----EEECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred             CCCEEEEE----EcCCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence            45665432    1234667899999999 553 488999999987431    111222222 222233344455667799


Q ss_pred             EEEEeC
Q psy12421        129 CVATNK  134 (168)
Q Consensus       129 C~a~n~  134 (168)
                      |.+...
T Consensus        79 C~V~H~   84 (94)
T d1de4a1          79 CQVEHP   84 (94)
T ss_dssp             EEEECT
T ss_pred             EEEEeC
Confidence            999875

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.84  E-value=0.00012  Score=42.67  Aligned_cols=75  Identities=20%  Similarity=0.401  Sum_probs=44.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCC---eEEEecCC----EEEEEEccCCCCCCeE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRD---YSMSYSDG----VVSMEIIDCKPEDSGE  126 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~---~~~~~~~~----~~~l~i~~~~~~d~G~  126 (168)
                      .+|.+...+.. ....|+..+|.|.+.|. | ...+.|+++|..+....   ......++    .+.|.+.   ..+...
T Consensus         4 v~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~   79 (101)
T d1fnga1           4 VAPEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLTFL---PSTDDF   79 (101)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEEEC---CCTTCC
T ss_pred             cCCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeEEc---CCCCCE
Confidence            46666553332 23457788999999984 4 44789999998775321   11112232    1234443   344557


Q ss_pred             EEEEEEeC
Q psy12421        127 YKCVATNK  134 (168)
Q Consensus       127 Y~C~a~n~  134 (168)
                      |+|.+...
T Consensus        80 ytC~V~H~   87 (101)
T d1fnga1          80 YDCEVDHW   87 (101)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99998865

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.84  E-value=0.00016  Score=41.92  Aligned_cols=78  Identities=17%  Similarity=0.376  Sum_probs=43.7

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCC--CeeEEEeCCEECCCCCe---EEEecCC-EEEEEEccCCCCCCeEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRDY---SMSYSDG-VVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~---~~~~~~~-~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +|.+...+.. ....++...|.|.+.|..+  ..+.|+++|..+.....   .....++ ........+...+...|+|.
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~   82 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQ   82 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEE
Confidence            4555443332 2334566789999998443  37899999988754211   1222233 22334445667778899999


Q ss_pred             EEeCC
Q psy12421        131 ATNKH  135 (168)
Q Consensus       131 a~n~~  135 (168)
                      +....
T Consensus        83 V~H~s   87 (98)
T d1d5mb1          83 VEHPS   87 (98)
T ss_dssp             EECTT
T ss_pred             EEECC
Confidence            98754

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=0.00014  Score=43.09  Aligned_cols=69  Identities=19%  Similarity=0.365  Sum_probs=47.3

Q ss_pred             CeEEecCCcEEEEEEEecc--CCCeeEEEeC--CEE----C--C----------CCCeEEEe--cCCEEEEEEccCCCCC
Q psy12421         66 PRVMQVRQTCKLLCCLSGK--PPPTVKWYKG--NRE----L--S----------KRDYSMSY--SDGVVSMEIIDCKPED  123 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~--p~p~i~W~~~--~~~----~--~----------~~~~~~~~--~~~~~~l~i~~~~~~d  123 (168)
                      ...+.+|++++|.|...+.  ..-.+.|++.  ++.    +  .          ..++.+..  ..+...|.|.+++.+|
T Consensus         4 ~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~eD   83 (110)
T d1u9ka_           4 RYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQVTD   83 (110)
T ss_dssp             EEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCGGG
T ss_pred             CCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECccccCC
Confidence            3567899999999998763  4557889984  221    1  0          01223322  2445679999999999


Q ss_pred             CeEEEEEEEeC
Q psy12421        124 SGEYKCVATNK  134 (168)
Q Consensus       124 ~G~Y~C~a~n~  134 (168)
                      +|.|.|.....
T Consensus        84 sa~YyCa~~~~   94 (110)
T d1u9ka_          84 SGLYRCVIYHP   94 (110)
T ss_dssp             CEEEEEEEECT
T ss_pred             CEEEEEEEeCC
Confidence            99999987544

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.83  E-value=5.8e-05  Score=42.02  Aligned_cols=79  Identities=19%  Similarity=0.286  Sum_probs=52.0

Q ss_pred             eEEecCCcEEEEEEEec-cCCCeeEEEeCCE----ECCCCC--e-EEEec--CCEEEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         67 RVMQVRQTCKLLCCLSG-KPPPTVKWYKGNR----ELSKRD--Y-SMSYS--DGVVSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g-~p~p~i~W~~~~~----~~~~~~--~-~~~~~--~~~~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      ..+..|+.+.|.|++.- -..|.++|-|-+.    .+....  . .....  -....|.+..+..+|.|.|.|.|+-..|
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            56788999999999874 4578999987432    232111  1 11111  2244688899999999999999986655


Q ss_pred             c-eEEEEEEE
Q psy12421        137 T-DETNCVVI  145 (168)
Q Consensus       137 ~-~~~~~~l~  145 (168)
                      - .+.+..|.
T Consensus        93 vieSHSvti~  102 (104)
T d1xaua_          93 VINSHSVTIH  102 (104)
T ss_dssp             EEECCCEEEE
T ss_pred             heecceEEEE
Confidence            4 33344443

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.82  E-value=0.00016  Score=41.93  Aligned_cols=79  Identities=18%  Similarity=0.347  Sum_probs=46.1

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCC---eEEEecCCE-EEEEEccCCCCCCeEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRD---YSMSYSDGV-VSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~---~~~~~~~~~-~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ||.+...... ....++.+.|.|.+.|. | ...+.|+++|..+....   ......++. .......+...+...|+|.
T Consensus         3 PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~   81 (98)
T d1hdmb1           3 PPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCV   81 (98)
T ss_dssp             CCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEE
T ss_pred             CCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEE
Confidence            5665543322 23456789999999995 3 45789999998875321   112222331 1222223344555679999


Q ss_pred             EEeCCc
Q psy12421        131 ATNKHG  136 (168)
Q Consensus       131 a~n~~g  136 (168)
                      +.....
T Consensus        82 V~H~sl   87 (98)
T d1hdmb1          82 VEHIGA   87 (98)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            987643

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00029  Score=40.38  Aligned_cols=77  Identities=17%  Similarity=0.286  Sum_probs=45.8

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCCeEE--EecCCE-EEEEEccCCCCCCeEEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRDYSM--SYSDGV-VSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~~~~--~~~~~~-~~l~i~~~~~~d~G~Y~C~  130 (168)
                      .||.+....   ....|+.+.|.|.+.| .|. ..+.|.++|..+.......  ...++. .......+...+...|+|.
T Consensus         2 ~PP~V~v~~---~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~   78 (94)
T d1t7va1           2 DPPSVVVTS---HQAPGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCH   78 (94)
T ss_dssp             BCCEEEEEE---EECTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEE
T ss_pred             cCCEeEEec---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEE
Confidence            456665422   2235778999999999 443 3789999998875432111  112221 1222333345556679999


Q ss_pred             EEeCC
Q psy12421        131 ATNKH  135 (168)
Q Consensus       131 a~n~~  135 (168)
                      +....
T Consensus        79 V~H~s   83 (94)
T d1t7va1          79 VQHSS   83 (94)
T ss_dssp             EEETT
T ss_pred             EEECC
Confidence            88753

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.81  E-value=5.4e-05  Score=45.07  Aligned_cols=72  Identities=21%  Similarity=0.379  Sum_probs=48.0

Q ss_pred             EEeecCCeEEecCCcEEEEEEEeccCCCeeEEEeC--CEEC-------CC----------CCeEEE-ecCCEEEEEEccC
Q psy12421         60 FTFLLRPRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NREL-------SK----------RDYSMS-YSDGVVSMEIIDC  119 (168)
Q Consensus        60 ~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~-------~~----------~~~~~~-~~~~~~~l~i~~~  119 (168)
                      +.+.|....+.+|++++|.|.........+.||+.  |+.+       ..          .++... ..+.  .|.|...
T Consensus         4 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~--~l~l~~~   81 (112)
T d1fo0b_           4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDT--ELRLQVA   81 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETT--EEEEEEE
T ss_pred             EEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceecccccccccccccccccccccccc--EEEEecC
Confidence            34556667788999999999987766678999985  2211       00          011111 1122  5788888


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      ..+|++.|.|.+..
T Consensus        82 ~~~dsa~Y~Ca~~~   95 (112)
T d1fo0b_          82 NMSQGRTLYCTCSA   95 (112)
T ss_dssp             SCCSCEEEEEEEES
T ss_pred             CccCCccEEEEEec
Confidence            89999999998653

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.68  E-value=1.2e-06  Score=51.14  Aligned_cols=71  Identities=20%  Similarity=0.410  Sum_probs=46.5

Q ss_pred             CeEEecCCcEEEEEEEeccCCCeeEEEeC--CEECC-------------CCCeEEEe--cCCEEEEEEccCCCCCCeEEE
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPPPTVKWYKG--NRELS-------------KRDYSMSY--SDGVVSMEIIDCKPEDSGEYK  128 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~p~i~W~~~--~~~~~-------------~~~~~~~~--~~~~~~l~i~~~~~~d~G~Y~  128 (168)
                      ++.+.+|++++|.|.... ....+.||+.  +..+.             ..++....  ......|.|.+++.+|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            345778999999998754 3457899974  22110             11222111  122346999999999999999


Q ss_pred             EEEEeCCcc
Q psy12421        129 CVATNKHGT  137 (168)
Q Consensus       129 C~a~n~~g~  137 (168)
                      |.+....|.
T Consensus        81 CA~~~~~g~   89 (96)
T d1ymmd1          81 CATDTTSGT   89 (96)
T ss_dssp             EEEEETTSC
T ss_pred             EeEecCCCC
Confidence            987766554

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.68  E-value=0.00041  Score=39.52  Aligned_cols=61  Identities=18%  Similarity=0.347  Sum_probs=38.5

Q ss_pred             cCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCCeEEE-ecCC----EEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         71 VRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRDYSMS-YSDG----VVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~~~~~-~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+..+.|.|.+.| .|. ..+.|+++|..+........ ..++    .+.|.+.   ..+...|+|.+...
T Consensus        14 ~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~dgty~~~S~l~v~---~~~~~~ytC~V~H~   81 (91)
T d3frua1          14 NSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDGSFHAWSLLEVK---RGDEHHYQCQVEHE   81 (91)
T ss_dssp             STTEEEEEEEEEEEBSSCCEEEEEETTEECCCCEEEEEECSSSCEEEEEEEEEE---TTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEeCCccCccceecCCCCEeEEEEEEEC---CCCCCEEEEEEEeC
Confidence            3457899999999 453 47899999988765332222 1222    1234443   34556799998765

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=0.00081  Score=36.66  Aligned_cols=59  Identities=20%  Similarity=0.394  Sum_probs=41.1

Q ss_pred             EecCCcEEEEEEEeccCCC--eeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEe
Q psy12421         69 MQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n  133 (168)
                      ...|..+.|.|.....+.+  .-.|.|+|..+...+.    .+....+.+..  ..++|.|.|...+
T Consensus         9 ~~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~----~~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2           9 EDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDAL----PGQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTC----CCSEEEEEECG--GGCCEEEEEEEES
T ss_pred             ccCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCC----CCCceEEEEec--CCCCceEEEEEcC
Confidence            3468889999998765543  4579999998876432    22323566654  6789999998653

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.65  E-value=0.00035  Score=40.46  Aligned_cols=78  Identities=17%  Similarity=0.359  Sum_probs=44.9

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCCe---EEEecCCE-EEEEEccCCCCCCeEEEE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRDY---SMSYSDGV-VSMEIIDCKPEDSGEYKC  129 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~---~~~~~~~~-~~l~i~~~~~~d~G~Y~C  129 (168)
                      .+|.+...+.. ....|...+|.|.+.|. | ...+.|.++|..+.....   .....++. .......+...+...|+|
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC   82 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDC   82 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEE
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEE
Confidence            45666543322 23457788999999995 3 347899999987753211   11222331 122222233445567999


Q ss_pred             EEEeC
Q psy12421        130 VATNK  134 (168)
Q Consensus       130 ~a~n~  134 (168)
                      .+...
T Consensus        83 ~V~H~   87 (99)
T d1uvqa1          83 KVEHW   87 (99)
T ss_dssp             EEECT
T ss_pred             EEEeC
Confidence            99865

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.64  E-value=0.00018  Score=43.16  Aligned_cols=67  Identities=24%  Similarity=0.463  Sum_probs=44.6

Q ss_pred             eEEecCCcEEEEEEEeccC----CCeeEEEeC--CEEC-----------------CCCCeEEEe--cCCEEEEEEccCCC
Q psy12421         67 RVMQVRQTCKLLCCLSGKP----PPTVKWYKG--NREL-----------------SKRDYSMSY--SDGVVSMEIIDCKP  121 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p----~p~i~W~~~--~~~~-----------------~~~~~~~~~--~~~~~~l~i~~~~~  121 (168)
                      ..+..|++++|.|.++|..    ...+.|++.  ++.+                 ...++.+..  ......|.|.+++.
T Consensus        10 ~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~~   89 (120)
T d2agjh1          10 TLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLDP   89 (120)
T ss_dssp             SBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCCG
T ss_pred             eeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeeee
Confidence            4456799999999988743    245789974  2111                 012333332  22345799999999


Q ss_pred             CCCeEEEEEEEe
Q psy12421        122 EDSGEYKCVATN  133 (168)
Q Consensus       122 ~d~G~Y~C~a~n  133 (168)
                      +|++.|.|....
T Consensus        90 eDsAvYyCAr~~  101 (120)
T d2agjh1          90 VDTATYYCARTS  101 (120)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             ccceEEeeEecC
Confidence            999999996544

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.56  E-value=0.00025  Score=41.34  Aligned_cols=81  Identities=17%  Similarity=0.261  Sum_probs=46.7

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCC---eEEEecCCE----EEEEEccCCCCCCeE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRD---YSMSYSDGV----VSMEIIDCKPEDSGE  126 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~---~~~~~~~~~----~~l~i~~~~~~d~G~  126 (168)
                      .+|.+..-+.......+..+.|.|.+.|. | ...+.|+++|..+....   ......++.    +.|.+..-.......
T Consensus         4 ~~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           4 SSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            35555443322222235678999999985 3 34789999998765321   111222332    235554444445678


Q ss_pred             EEEEEEeCCc
Q psy12421        127 YKCVATNKHG  136 (168)
Q Consensus       127 Y~C~a~n~~g  136 (168)
                      |+|.+.....
T Consensus        84 ytC~V~H~~~   93 (102)
T d1q0xl2          84 YSCQVTHEGH   93 (102)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEECCc
Confidence            9999987643

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.56  E-value=0.00022  Score=41.10  Aligned_cols=62  Identities=18%  Similarity=0.438  Sum_probs=38.7

Q ss_pred             cCCcEEEEEEEec-cCCC-eeEEEeCCEECCCCCe--EEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         71 VRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKRDY--SMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~~--~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .+..++|.|.+.| .|.. .+.|++++........  .....++.    +.|.+.   ..+...|+|.+....
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v~---~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDVA---DGEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEEE---GGGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEEe---CccCCEEEEEEEeCC
Confidence            3568999999998 5544 7899999887654221  12223332    234443   344557999988653

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00022  Score=41.84  Aligned_cols=80  Identities=20%  Similarity=0.337  Sum_probs=46.7

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEec-cC-CCeeEEEeCCEECCCCCeE----EEecCCE----EEEEEccCCCCCCeE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSG-KP-PPTVKWYKGNRELSKRDYS----MSYSDGV----VSMEIIDCKPEDSGE  126 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g-~p-~p~i~W~~~~~~~~~~~~~----~~~~~~~----~~l~i~~~~~~d~G~  126 (168)
                      +|.+..-+.......++.++|.|.+.| .| ...+.|+++|..+......    ....++.    +.|.+..-.......
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~   83 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDE   83 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCE
Confidence            455443322222334668999999988 44 3589999999987542211    1222221    235554443345567


Q ss_pred             EEEEEEeCCc
Q psy12421        127 YKCVATNKHG  136 (168)
Q Consensus       127 Y~C~a~n~~g  136 (168)
                      |+|.+.....
T Consensus        84 ytC~V~H~~l   93 (105)
T d1fp5a2          84 FICRAVHEAA   93 (105)
T ss_dssp             EEEEEECTTS
T ss_pred             EEEEEEECCC
Confidence            9999987543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.45  E-value=0.0009  Score=39.90  Aligned_cols=69  Identities=19%  Similarity=0.352  Sum_probs=46.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeC--CEEC------C-----------CCCeEEEe--cCCEEEEEEccC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKG--NREL------S-----------KRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~--~~~~------~-----------~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      ......+..|++++|.|.++|...  -.+.|++.  |+.+      .           ..++.+..  ......|.|.++
T Consensus         6 esG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l   85 (120)
T d1dn0b1           6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (120)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheeccccccc
Confidence            334467788999999999998553  35789874  1111      0           12344443  233456999999


Q ss_pred             CCCCCeEEEEEE
Q psy12421        120 KPEDSGEYKCVA  131 (168)
Q Consensus       120 ~~~d~G~Y~C~a  131 (168)
                      +.+|.+.|.|..
T Consensus        86 ~~eDtA~YYCAr   97 (120)
T d1dn0b1          86 TAADTAVYYCAR   97 (120)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccccEEEEEe
Confidence            999999999943

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.43  E-value=0.00093  Score=38.42  Aligned_cols=78  Identities=14%  Similarity=0.318  Sum_probs=41.6

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCCEECCCCCe---EEEecCC-EEEEEEccCCCCCCeEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGNRELSKRDY---SMSYSDG-VVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~~~~~~~~~---~~~~~~~-~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      +|.+...+.. ....++..+|.|.+.|.-  ...+.|.++|..+.....   .....++ ........+...+...|+|.
T Consensus         2 ~P~V~v~p~~-~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~   80 (97)
T d1uvqb1           2 EPTVTISPSR-TEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCH   80 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEE
T ss_pred             CCEEEEecCC-cccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEE
Confidence            3555433322 223466778999999844  357899999987643211   1122233 22233334556667789999


Q ss_pred             EEeCC
Q psy12421        131 ATNKH  135 (168)
Q Consensus       131 a~n~~  135 (168)
                      +....
T Consensus        81 V~H~s   85 (97)
T d1uvqb1          81 VEHPS   85 (97)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            88653

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.38  E-value=0.0019  Score=38.55  Aligned_cols=71  Identities=21%  Similarity=0.417  Sum_probs=47.2

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC------C------------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~------~------------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      .+....+..|++++|.|.++|..  .-.+.|++.  |+.+      .            ..++.+..  ..+...|.|.+
T Consensus         6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~   85 (120)
T d1pg7x1           6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVR   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccc
Confidence            34455678899999999998743  346789874  1111      0            12333332  23344699999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        86 l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          86 LTSNDSAVYYCARED  100 (120)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCcceEEEeeecC
Confidence            999999999997653

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.34  E-value=0.0011  Score=39.20  Aligned_cols=70  Identities=29%  Similarity=0.448  Sum_probs=47.1

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeC--CEEC-------C----------CCCeEEEec--CCEEEEEEccC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKG--NREL-------S----------KRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~--~~~~-------~----------~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      ......+..|++++|.|.++|...  -.+.|+++  |+.+       .          ..++.+...  .+...|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL   85 (117)
T d1c5db1           6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (117)
T ss_dssp             EECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccc
Confidence            334467788999999999998543  36788874  1111       0          123434332  33456999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12421        120 KPEDSGEYKCVAT  132 (168)
Q Consensus       120 ~~~d~G~Y~C~a~  132 (168)
                      +.+|.+.|.|...
T Consensus        86 ~~eDtAvYYCAr~   98 (117)
T d1c5db1          86 QTEDTAIYFCTRE   98 (117)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             ccCcceEEEEecc
Confidence            9999999999543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.33  E-value=0.0012  Score=39.26  Aligned_cols=71  Identities=20%  Similarity=0.373  Sum_probs=47.2

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCC---eeEEEeC--CEEC-------C----------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPP---TVKWYKG--NREL-------S----------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p---~i~W~~~--~~~~-------~----------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|....   .+.|++.  |+-+       .          ..++.+..  ..+...|.+.+
T Consensus         6 esG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~s   85 (119)
T d1ncwh1           6 QSGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNS   85 (119)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeeccccc
Confidence            3445677889999999999986543   3678763  2111       0          12333333  23345689999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          86 VTTEDTATYYCAGLL  100 (119)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccCCceEEEEeEec
Confidence            999999999996544

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.33  E-value=0.0018  Score=39.29  Aligned_cols=69  Identities=22%  Similarity=0.424  Sum_probs=46.1

Q ss_pred             CCeEEecCCcEEEEEEEeccC----CCeeEEEeCC--EEC-----------------CCCCeEEEec--CCEEEEEEccC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKP----PPTVKWYKGN--REL-----------------SKRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p----~p~i~W~~~~--~~~-----------------~~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      ....+..|++++|.|.++|..    ...+.|++..  +.+                 ...++.+...  .....|.|.++
T Consensus         8 g~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~l   87 (132)
T d1tjgh1           8 GPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTRV   87 (132)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEcccccC
Confidence            345677899999999998743    2357898741  111                 0123333332  23456999999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      +.+|++.|.|....
T Consensus        88 ~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          88 SPVDTATYFCAHRR  101 (132)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CcccceEEEEEEec
Confidence            99999999997553

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.00089  Score=39.87  Aligned_cols=66  Identities=15%  Similarity=0.183  Sum_probs=41.1

Q ss_pred             EEecCCcEEEEEEEeccCCC--e-eEEEeCCE-EC----------------CCCCeEE--EecCCEEEEEEccCCCCCCe
Q psy12421         68 VMQVRQTCKLLCCLSGKPPP--T-VKWYKGNR-EL----------------SKRDYSM--SYSDGVVSMEIIDCKPEDSG  125 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~p~p--~-i~W~~~~~-~~----------------~~~~~~~--~~~~~~~~l~i~~~~~~d~G  125 (168)
                      .+..|++++|.|...+....  . +.|++... .+                ...++..  ........|.|.+++.+|+|
T Consensus        11 ~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Dsa   90 (118)
T d1yjdc1          11 LVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQTD   90 (118)
T ss_dssp             EECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGCE
T ss_pred             EEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccCe
Confidence            45679999999998754433  2 34554311 00                0111222  22344567999999999999


Q ss_pred             EEEEEEEe
Q psy12421        126 EYKCVATN  133 (168)
Q Consensus       126 ~Y~C~a~n  133 (168)
                      .|.|.+..
T Consensus        91 vYyCa~~~   98 (118)
T d1yjdc1          91 IYFCKIEV   98 (118)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEec
Confidence            99997654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.32  E-value=0.00095  Score=39.55  Aligned_cols=68  Identities=24%  Similarity=0.391  Sum_probs=44.9

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC------C------------CCCeEEEe--cCCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~------~------------~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++.  |+.+      .            ..++.+..  ..+...|.|.++
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~l   86 (115)
T d1f3dh1           7 SGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNSL   86 (115)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeeec
Confidence            3345677899999999998743  345788874  1111      0            12333332  233446999999


Q ss_pred             CCCCCeEEEEEE
Q psy12421        120 KPEDSGEYKCVA  131 (168)
Q Consensus       120 ~~~d~G~Y~C~a  131 (168)
                      +.+|.+.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (115)
T d1f3dh1          87 TFEDSAVYYCAN   98 (115)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CcCCcEEEEEec
Confidence            999999999954

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.31  E-value=0.0042  Score=35.97  Aligned_cols=66  Identities=18%  Similarity=0.327  Sum_probs=40.4

Q ss_pred             ecCCcEEEEEEEeccCC--CeeEEEeCCEECCCCCeE--EEecCCEEEE-EEccCCCCCCeEEEEEEEeCC
Q psy12421         70 QVRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRDYS--MSYSDGVVSM-EIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        70 ~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~~--~~~~~~~~~l-~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      ..|+..+|.|.+.|.-+  ..+.|.++|..+......  ....++...+ ....+...+...|+|.+....
T Consensus        16 e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~v~~~~~~~ytC~V~H~~   86 (103)
T d1hdma1          16 EFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLNFTPEPSDIFSCIVTHEP   86 (103)
T ss_dssp             CTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEEECCCTTCCEEEEEEETT
T ss_pred             hcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEEEecCCCCEEEEEEEeCC
Confidence            46788899999999443  468999999987543221  2223442111 111233445557999998764

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00064  Score=38.98  Aligned_cols=75  Identities=13%  Similarity=0.263  Sum_probs=41.4

Q ss_pred             CCeEEeecCCeEEecCCcEEEEEEEeccCCC--eeEEEeCCEECCCCCe---EEEecCC-EEEEEEccCCCCCCeEEEEE
Q psy12421         57 APNFTFLLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDY---SMSYSDG-VVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        57 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~---~~~~~~~-~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ||.+.....   ...+..+.|.|.+.|..+.  .+.|+++|..+.....   .....++ ........+...+...|+|.
T Consensus         3 PP~v~v~~~---~~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~~~~~~~~~~~~~~~s~l~v~~~~~~~ytC~   79 (95)
T d1k5na1           3 PPKTHVTHH---PISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTELVETRPAGDRTFQKWAAVVVPSGEEQRYTCH   79 (95)
T ss_dssp             CCEEEEEEE---EEETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEECCCEECSSSCEEEEEEEEEETTCGGGEEEE
T ss_pred             CCccEEEec---cCCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCceeccEEcCCCCeEEEEEEEEEEcCCCCEEEEE
Confidence            565544321   2235678999999995544  5799999987753211   1111222 11111222233444579999


Q ss_pred             EEeC
Q psy12421        131 ATNK  134 (168)
Q Consensus       131 a~n~  134 (168)
                      +...
T Consensus        80 V~H~   83 (95)
T d1k5na1          80 VQHE   83 (95)
T ss_dssp             EECT
T ss_pred             EEEC
Confidence            8864

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.30  E-value=0.001  Score=39.47  Aligned_cols=68  Identities=24%  Similarity=0.435  Sum_probs=45.4

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--E--E----CC------------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--R--E----LS------------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~--~----~~------------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.-  +  .    +.            ..++.+..  ......|.|.+
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~   85 (118)
T d1nlbh1           6 QSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINS   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeee
Confidence            34446678899999999998844  3457888741  1  0    11            12333332  23344689999


Q ss_pred             CCCCCCeEEEEE
Q psy12421        119 CKPEDSGEYKCV  130 (168)
Q Consensus       119 ~~~~d~G~Y~C~  130 (168)
                      ++.+|.+.|.|.
T Consensus        86 L~~eDtAvYYCA   97 (118)
T d1nlbh1          86 LKNEDTATYFCA   97 (118)
T ss_dssp             CCGGGCEEEEEE
T ss_pred             cccCcceEEEEe
Confidence            999999999994

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.29  E-value=0.00043  Score=40.30  Aligned_cols=68  Identities=15%  Similarity=0.286  Sum_probs=37.3

Q ss_pred             cCCcEEEEEEEeccC--CCeeEEEeCCEECCCCCeEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCCcceE
Q psy12421         71 VRQTCKLLCCLSGKP--PPTVKWYKGNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTDE  139 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p--~p~i~W~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~~  139 (168)
                      .++.+.|.|.+.|.-  ...+.|..++.............++.    +.|.|..-.. +.+.|+|.+....+...
T Consensus        19 ~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~ys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~~   92 (102)
T d1mjuh2          19 SGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTW-PSQSITCNVAHPASSTK   92 (102)
T ss_dssp             ---CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTT-TTSCCEEEEEEGGGTEE
T ss_pred             CCCcEEEEEEEeeeeCCCeEEEECcCCccCCeEecccccCCCCEEEEEEEEEehhHc-CCceEEEEEEECCCCEE
Confidence            467899999999843  34789976653221100111112331    2355555544 34679999998655443

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.29  E-value=0.00027  Score=41.14  Aligned_cols=80  Identities=18%  Similarity=0.251  Sum_probs=45.2

Q ss_pred             CCCeEEeecCCeEEecCCcEEEEEEEeccCC--CeeEEEeCCEECCCCCe---EEEecCCE----EEEEEccCCCCCCeE
Q psy12421         56 SAPNFTFLLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGNRELSKRDY---SMSYSDGV----VSMEIIDCKPEDSGE  126 (168)
Q Consensus        56 ~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~~~~~~~~~---~~~~~~~~----~~l~i~~~~~~d~G~  126 (168)
                      .+|.+..-+....-..++.+.|.|.+.|..+  ..+.|.++|..+.....   .....++.    +.|.+..-.......
T Consensus         4 ~~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           4 AAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             BCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            3565554332222223667899999998433  36899999988764321   12223332    234443322223456


Q ss_pred             EEEEEEeCC
Q psy12421        127 YKCVATNKH  135 (168)
Q Consensus       127 Y~C~a~n~~  135 (168)
                      |+|.+....
T Consensus        84 ytC~V~H~~   92 (102)
T d1rzfl2          84 YSCQVTHEG   92 (102)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEECC
Confidence            999998764

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.29  E-value=0.0029  Score=37.45  Aligned_cols=72  Identities=19%  Similarity=0.379  Sum_probs=47.7

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE------C------------CCCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE------L------------SKRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~------~------------~~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++..  +-      +            ...++.+..  ......|.|.+
T Consensus         6 esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~   85 (117)
T d1iqdb1           6 QSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecc
Confidence            34446678899999999998853  3356888731  10      1            012333333  23344699999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12421        119 CKPEDSGEYKCVATNK  134 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~  134 (168)
                      ++.+|.+.|.|.....
T Consensus        86 L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          86 LRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             cCcCcceEEEEeEcCC
Confidence            9999999999976543

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.28  E-value=0.0033  Score=37.51  Aligned_cols=71  Identities=18%  Similarity=0.352  Sum_probs=47.1

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC--------C----------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL--------S----------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~--------~----------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.  |+.+        .          ..++.+..  ......|.|.+
T Consensus         6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~   85 (121)
T d1j05b_           6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS   85 (121)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence            34456788899999999998743  446789874  1111        0          11333332  23344589999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          86 LTSEDTAVYYCAPFG  100 (121)
T ss_dssp             CCGGGCEEEEEEEEB
T ss_pred             cCcCcceEEEeEeec
Confidence            999999999997554

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.28  E-value=0.0019  Score=37.70  Aligned_cols=70  Identities=26%  Similarity=0.480  Sum_probs=46.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--C--EE----C-C-------------CCCeEEEec--CCEEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--N--RE----L-S-------------KRDYSMSYS--DGVVSMEI  116 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~--~~----~-~-------------~~~~~~~~~--~~~~~l~i  116 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.  |  ..    + .             ..++.+...  .....|.|
T Consensus         6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i   85 (109)
T d2ck0h1           6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQM   85 (109)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecc
Confidence            34456788999999999998844  336788763  1  11    0 0             123334332  33456899


Q ss_pred             ccCCCCCCeEEEEEEE
Q psy12421        117 IDCKPEDSGEYKCVAT  132 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~  132 (168)
                      .+++.+|.+.|.|...
T Consensus        86 ~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cCCCHhHCEEEEEEEc
Confidence            9999999999999644

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.27  E-value=0.0023  Score=38.27  Aligned_cols=68  Identities=24%  Similarity=0.452  Sum_probs=44.3

Q ss_pred             CCeEEecCCcEEEEEEEeccCC----CeeEEEeC--CEEC-------C----------CCCeEEEe--cCCEEEEEEccC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPP----PTVKWYKG--NREL-------S----------KRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~----p~i~W~~~--~~~~-------~----------~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      ....+..|++++|.|.++|...    -.+.|++.  ++.+       .          ..++.+..  ......|.|.++
T Consensus         8 g~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~sl   87 (123)
T d1r0ah1           8 GPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMTV   87 (123)
T ss_dssp             CCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceeec
Confidence            3456778999999999987432    24679863  1111       0          01233322  223446999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12421        120 KPEDSGEYKCVAT  132 (168)
Q Consensus       120 ~~~d~G~Y~C~a~  132 (168)
                      +.+|++.|.|...
T Consensus        88 ~~eDsAvYyCAr~  100 (123)
T d1r0ah1          88 ETADTAIYYCAQS  100 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEeeccc
Confidence            9999999999754

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.26  E-value=0.0014  Score=38.03  Aligned_cols=66  Identities=26%  Similarity=0.353  Sum_probs=39.4

Q ss_pred             cCCcEEEEEEEeccCC--CeeEEEeCC--EEC------C------------CCCeEEEec--CCEEEEEEccCCCCCCeE
Q psy12421         71 VRQTCKLLCCLSGKPP--PTVKWYKGN--REL------S------------KRDYSMSYS--DGVVSMEIIDCKPEDSGE  126 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~--p~i~W~~~~--~~~------~------------~~~~~~~~~--~~~~~l~i~~~~~~d~G~  126 (168)
                      .|++++|.|.++|...  -.+.|++..  +.+      .            ..++.+...  .....|.|.+++.+|.+.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            3789999999988543  367898642  211      0            123333322  233469999999999999


Q ss_pred             EEEEEEeCCc
Q psy12421        127 YKCVATNKHG  136 (168)
Q Consensus       127 Y~C~a~n~~g  136 (168)
                      |.|......+
T Consensus        81 YYCAr~~~~~   90 (103)
T d1oari_          81 YYCARMWYYG   90 (103)
T ss_dssp             EEEEEEECSS
T ss_pred             EEeEEECCCC
Confidence            9997655443

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.25  E-value=0.0031  Score=37.44  Aligned_cols=70  Identities=17%  Similarity=0.450  Sum_probs=47.0

Q ss_pred             CCeEEecCCcEEEEEEEeccCC--CeeEEEeCC--E--E----CC-----------CCCeEEEec--CCEEEEEEccCCC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGN--R--E----LS-----------KRDYSMSYS--DGVVSMEIIDCKP  121 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~--~--~----~~-----------~~~~~~~~~--~~~~~l~i~~~~~  121 (168)
                      ....+..|++++|.|.++|...  -.+.|++.-  +  .    +.           ..++.+...  .....|.|.+++.
T Consensus         7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            3456788999999999988543  356788742  1  0    00           123444332  2344699999999


Q ss_pred             CCCeEEEEEEEeC
Q psy12421        122 EDSGEYKCVATNK  134 (168)
Q Consensus       122 ~d~G~Y~C~a~n~  134 (168)
                      +|++.|.|.....
T Consensus        87 eDtA~YYCAr~~~   99 (119)
T d1kxvc_          87 DDTAMYYCKPSLR   99 (119)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCcceEeeeeccc
Confidence            9999999976543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.25  E-value=0.0032  Score=37.83  Aligned_cols=68  Identities=21%  Similarity=0.383  Sum_probs=45.7

Q ss_pred             CeEEecCCcEEEEEEEeccCC---CeeEEEeC--CEEC-------C----------CCCeEEEe--cCCEEEEEEccCCC
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPP---PTVKWYKG--NREL-------S----------KRDYSMSY--SDGVVSMEIIDCKP  121 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~---p~i~W~~~--~~~~-------~----------~~~~~~~~--~~~~~~l~i~~~~~  121 (168)
                      ...+..|++++|.|.++|...   -.+.|++.  |+.+       .          ..++.+..  ......|.|.+++.
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~~   88 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVTT   88 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceecccc
Confidence            456778999999999998543   35789874  2111       0          11222222  23445699999999


Q ss_pred             CCCeEEEEEEEe
Q psy12421        122 EDSGEYKCVATN  133 (168)
Q Consensus       122 ~d~G~Y~C~a~n  133 (168)
                      +|.+.|.|....
T Consensus        89 eDtAvYyCAr~~  100 (127)
T d3cx5j1          89 EDTATYYCARSE  100 (127)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccceEEEeeeec
Confidence            999999997543

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.25  E-value=0.00041  Score=40.30  Aligned_cols=67  Identities=19%  Similarity=0.343  Sum_probs=39.7

Q ss_pred             cCCcEEEEEEEec-cC-CCeeEEEeCCEECCCCCeEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         71 VRQTCKLLCCLSG-KP-PPTVKWYKGNRELSKRDYSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p-~p~i~W~~~~~~~~~~~~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      .++.+.|.|.+.| .| ...+.|.+++.............++.    +.|.|..-.. +.+.|+|.+.......
T Consensus        19 ~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~~~~~~~~~~g~~s~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   91 (101)
T d1kcvh2          19 AASAVTLGCLVKGYFPEPVTVAWNEGALSSGVLTVSAVLQSGLYTLSSNTTVASGTW-PSASVTCLVAHPKSST   91 (101)
T ss_dssp             TCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTT-TTSCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEEEeCCCCEEEEecCCCcccceeeeeecCCCCEEEEEEEEEchhhc-CCCeEEEEEEeCCCCe
Confidence            5778999999998 44 34789987765321100011112332    2456554443 3578999998765543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.0015  Score=38.16  Aligned_cols=65  Identities=20%  Similarity=0.324  Sum_probs=40.2

Q ss_pred             cCCcEEEEEEEecc-CC-CeeEEEeCCEECCCCCeEEE----ecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         71 VRQTCKLLCCLSGK-PP-PTVKWYKGNRELSKRDYSMS----YSDGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        71 ~g~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~~----~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .+..+.|.|.+.|. |. ..+.|.++|...........    ..++.    +.|.|..-.......|+|.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   93 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQG   93 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35689999999984 43 47999999987754321111    11221    235554433344557999998754

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00081  Score=38.03  Aligned_cols=61  Identities=21%  Similarity=0.298  Sum_probs=36.6

Q ss_pred             cCCcEEEEEEEeccCCC--eeEEEeCCEECCCCCe---EEEecCC----EEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         71 VRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDY---SMSYSDG----VVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~---~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+..+.|.|.+.|..+.  .+.|.++|..+.....   .....++    .+.|.+..   .+...|+|.+...
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~---~~~~~ytC~V~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVVPL---GKEQYYTCHVYHQ   83 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEEES---STTTTCEEEEECS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEecC---cCCCEEEEEEEEC
Confidence            45689999999995443  6799999987753221   1112222    12344443   2333599988654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.23  E-value=0.0026  Score=37.67  Aligned_cols=69  Identities=22%  Similarity=0.296  Sum_probs=45.8

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC------C------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL------S------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~------~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+..|++++|.|.++|..  .-.+.|++.  |+-+      .            ..++.+...  .+...|.|.+
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~~   85 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeecc
Confidence            44556778899999999998743  446778763  1111      0            112333322  3344689999


Q ss_pred             CCCCCCeEEEEEE
Q psy12421        119 CKPEDSGEYKCVA  131 (168)
Q Consensus       119 ~~~~d~G~Y~C~a  131 (168)
                      ++.+|.+.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (117)
T d1mfah1          86 LTSEDSAVYYCTR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEec
Confidence            9999999999964

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.23  E-value=0.0018  Score=38.56  Aligned_cols=70  Identities=26%  Similarity=0.388  Sum_probs=46.3

Q ss_pred             cCCeEEecCCcEEEEEEEeccCC----CeeEEEeCC--EEC-------C----------CCCeEEEe--cCCEEEEEEcc
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPP----PTVKWYKGN--REL-------S----------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~----p~i~W~~~~--~~~-------~----------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      .....+..|++++|.|.++|...    -.+.|++..  +.+       .          ..++.+..  ......|.|.+
T Consensus         7 sG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~s   86 (120)
T d1ai1h1           7 SGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLIS   86 (120)
T ss_dssp             ECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESS
T ss_pred             ECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceee
Confidence            34456778999999999998532    246798742  111       0          12333333  23345699999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        87 L~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          87 VTNEDTAMYYCSREN  101 (120)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             eeccceeEEEEEecC
Confidence            999999999997554

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0006  Score=39.77  Aligned_cols=66  Identities=18%  Similarity=0.328  Sum_probs=41.0

Q ss_pred             cCCcEEEEEEEec-cCCC-eeEEEeCCEECCCCC--eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         71 VRQTCKLLCCLSG-KPPP-TVKWYKGNRELSKRD--YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~p-~i~W~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      .+.++.|.|.+.| .|.. .+.|+++|..+....  ......++.    +.|.|..-.......|+|.+.....
T Consensus        20 ~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          20 FPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            4567899999998 5544 689999999876422  111223332    2355544333345679999998643

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.22  E-value=0.0016  Score=38.39  Aligned_cols=68  Identities=21%  Similarity=0.385  Sum_probs=45.7

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE------C-C-----------CCCeEEEec--CCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE------L-S-----------KRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~------~-~-----------~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++..  +-      + .           ..++.+...  .....|.|.++
T Consensus         7 SG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L   86 (114)
T d1indh1           7 SGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSL   86 (114)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeee
Confidence            3446778899999999998854  3457888742  10      1 1           123334332  33446999999


Q ss_pred             CCCCCeEEEEEE
Q psy12421        120 KPEDSGEYKCVA  131 (168)
Q Consensus       120 ~~~d~G~Y~C~a  131 (168)
                      +.+|.+.|.|..
T Consensus        87 ~~eDtAvYYCA~   98 (114)
T d1indh1          87 RSEDTALYFCAS   98 (114)
T ss_dssp             CGGGCEEEEEEC
T ss_pred             ccCcccEEEECC
Confidence            999999999953

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.22  E-value=0.0014  Score=39.03  Aligned_cols=69  Identities=22%  Similarity=0.392  Sum_probs=45.4

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC------C------------CCCeEEEe--cCCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL------S------------KRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~------~------------~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++.  |+.+      .            ..++.+..  ......|.|.++
T Consensus         7 sg~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L   86 (119)
T d1qnzh_           7 SGAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRL   86 (119)
T ss_dssp             ECCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeeccc
Confidence            3345777899999999998743  335789874  2111      0            12333332  233446999999


Q ss_pred             CCCCCeEEEEEEE
Q psy12421        120 KPEDSGEYKCVAT  132 (168)
Q Consensus       120 ~~~d~G~Y~C~a~  132 (168)
                      +.+|.+.|.|...
T Consensus        87 ~~eDsAvYYCA~~   99 (119)
T d1qnzh_          87 TSDDSAVYYCAIH   99 (119)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CccceeEEEEEEe
Confidence            9999999999543

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.22  E-value=0.002  Score=38.25  Aligned_cols=70  Identities=20%  Similarity=0.325  Sum_probs=46.7

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE------C--C----------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE------L--S----------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~------~--~----------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.-  +-      +  .          ..++.+..  ......|.|.+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~s   85 (119)
T d1rz7h1           6 QSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeec
Confidence            33446678899999999999844  3367888741  10      1  0          12333433  23344689999


Q ss_pred             CCCCCCeEEEEEEE
Q psy12421        119 CKPEDSGEYKCVAT  132 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~  132 (168)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1rz7h1          86 LRSEDTAVYYCAAD   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcccceEEEEeec
Confidence            99999999999654

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.21  E-value=0.00049  Score=38.85  Aligned_cols=67  Identities=27%  Similarity=0.459  Sum_probs=44.4

Q ss_pred             EEecCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCC-CCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         68 VMQVRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      +..-|.+|.|.|+..+.  ..+.|-+++..+....      +.  .|.+.+.+. +++|.|.|...  .+.....+.|..
T Consensus        10 VSISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~------~~--~L~L~~FSE~e~SGyY~C~~~--~~~~~~~LYLKA   77 (100)
T d1jbja2          10 VSISGTSVELTCPLDSD--ENLKWEKNGQELPQKH------DK--HLVLQDFSEVEDSGYYVCYTP--ASNKNTYLYLKA   77 (100)
T ss_dssp             EEEETTEEEEECSSCCC--TTCEEEETTEEECSCC------CS--EEEEESCCTTTSCEEEEEECS--SCCCCCCEEECC
T ss_pred             EEEeCCEEEEECCCCCC--CceEEeeccccCCCCC------Cc--EEEEccccccccCcceEEecC--CCCcceEEEEEE
Confidence            33459999999996543  4699999998776522      11  567777766 79999999633  233333444443

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.20  E-value=0.004  Score=37.43  Aligned_cols=67  Identities=27%  Similarity=0.461  Sum_probs=44.4

Q ss_pred             CeEEecCCcEEEEEEEeccCC----CeeEEEeC--CEEC-------C----------CCCeEEEec--CCEEEEEEccCC
Q psy12421         66 PRVMQVRQTCKLLCCLSGKPP----PTVKWYKG--NREL-------S----------KRDYSMSYS--DGVVSMEIIDCK  120 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p~----p~i~W~~~--~~~~-------~----------~~~~~~~~~--~~~~~l~i~~~~  120 (168)
                      ...+..|++++|.|.++|...    -.+.|++.  ++.+       .          ..++.+...  .....|.|.+++
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~   88 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVD   88 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccc
Confidence            456778999999999987432    24578763  1111       0          123444332  334569999999


Q ss_pred             CCCCeEEEEEEE
Q psy12421        121 PEDSGEYKCVAT  132 (168)
Q Consensus       121 ~~d~G~Y~C~a~  132 (168)
                      .+|.+.|.|...
T Consensus        89 ~eDtAvYyCAr~  100 (126)
T d1etzb1          89 TSDTATYHCARR  100 (126)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             ccccceEEEEEe
Confidence            999999999744

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.17  E-value=0.0022  Score=37.92  Aligned_cols=72  Identities=22%  Similarity=0.349  Sum_probs=48.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC-------C----------CCCeEEEe--cCCEEEEEEccC
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL-------S----------KRDYSMSY--SDGVVSMEIIDC  119 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~-------~----------~~~~~~~~--~~~~~~l~i~~~  119 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.  |+.+       .          ..++.+..  ......|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L   85 (116)
T d7fabh1           6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc
Confidence            34456778899999999999854  336788874  2111       0          12333433  233456999999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12421        120 KPEDSGEYKCVATNK  134 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~  134 (168)
                      +.+|.+.|.|.....
T Consensus        86 ~~eDtAvYyCAr~~~  100 (116)
T d7fabh1          86 TAADTAVYYCARNLI  100 (116)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             ccccceEEEeeeecC
Confidence            999999999975443

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.15  E-value=0.0017  Score=38.54  Aligned_cols=69  Identities=22%  Similarity=0.342  Sum_probs=46.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEE------CC------------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRE------LS------------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~------~~------------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.  |+-      +.            ..++.+..  ......|.|.+
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~s   85 (119)
T d1eapb1           6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeec
Confidence            34456678899999999999854  335789874  110      11            11333332  23345699999


Q ss_pred             CCCCCCeEEEEEE
Q psy12421        119 CKPEDSGEYKCVA  131 (168)
Q Consensus       119 ~~~~d~G~Y~C~a  131 (168)
                      ++.+|.+.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (119)
T d1eapb1          86 LTSEDSAVYFCKR   98 (119)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccCCcceEEEEEE
Confidence            9999999999954

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.15  E-value=0.0041  Score=37.23  Aligned_cols=71  Identities=21%  Similarity=0.411  Sum_probs=47.1

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--E--E----CC------------CCCeEEEec--CCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--R--E----LS------------KRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~--~----~~------------~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++..  +  .    +.            ..++.+...  .....|.|.++
T Consensus         7 Sg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L   86 (126)
T d1dfbh1           7 SGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSL   86 (126)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeee
Confidence            3345677899999999999854  3467888741  1  0    11            123333332  23456899999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12421        120 KPEDSGEYKCVATNK  134 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~  134 (168)
                      +.+|.+.|.|.....
T Consensus        87 ~~eDtavYYCAr~~~  101 (126)
T d1dfbh1          87 RAEDMALYYCVKGRD  101 (126)
T ss_dssp             CGGGCEEEEEEEEEC
T ss_pred             ccCcceEEEEEeccC
Confidence            999999999976543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.14  E-value=0.00094  Score=37.19  Aligned_cols=74  Identities=15%  Similarity=0.295  Sum_probs=48.0

Q ss_pred             ecCCcEEEEEEEeccCCCeeEEEeCCEECCCC--CeEEEecCCEEEEEEccCCC-CCCeEEEEEEEeC-CcceEEEEEEE
Q psy12421         70 QVRQTCKLLCCLSGKPPPTVKWYKGNRELSKR--DYSMSYSDGVVSMEIIDCKP-EDSGEYKCVATNK-HGTDETNCVVI  145 (168)
Q Consensus        70 ~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~--~~~~~~~~~~~~l~i~~~~~-~d~G~Y~C~a~n~-~g~~~~~~~l~  145 (168)
                      .-|.++.|.|+.  .....+.|.+++..+...  ...+.....  .|.+.+.+. +++|.|.|.+... -......+.|.
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~~~~~~--~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLK   83 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNIGSDED--HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR   83 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTEEEETT--EEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEE
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCcccccccccc--eEEecccCccccCceEEEEcCCCCCCCcceEEEEE
Confidence            358999999974  345679999998877542  111222233  577888876 6899999987543 23334455555


Q ss_pred             Ee
Q psy12421        146 VE  147 (168)
Q Consensus       146 v~  147 (168)
                      +.
T Consensus        84 AR   85 (91)
T d1xiwa_          84 AR   85 (91)
T ss_dssp             EC
T ss_pred             eE
Confidence            43

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.14  E-value=0.003  Score=37.83  Aligned_cols=70  Identities=23%  Similarity=0.445  Sum_probs=46.6

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE------C-C-----------CCCeEEEec--CCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE------L-S-----------KRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~------~-~-----------~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++..  +-      + .           ..++.+...  .....|.|.++
T Consensus         6 sG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL   85 (124)
T d1zvya1           6 SGGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSV   85 (124)
T ss_dssp             ECCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceeccc
Confidence            3345677899999999999855  3367898742  11      1 0           123333322  33456899999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      +.+|.+.|.|....
T Consensus        86 ~~eDtAvYYCAr~~   99 (124)
T d1zvya1          86 KSEDTAIYTCGATR   99 (124)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             cCCcceEEEEeecc
Confidence            99999999997543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.12  E-value=0.0023  Score=37.95  Aligned_cols=74  Identities=19%  Similarity=0.332  Sum_probs=48.7

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCC--eeEEEeCC--EE------CC------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKGN--RE------LS------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~--~~------~~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|....  .+.|++.-  +-      +.            ..++.+...  .+...|.|.+
T Consensus         6 eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   85 (118)
T d2fbjh1           6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (118)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccc
Confidence            3345678889999999999985433  56788641  10      10            123334332  2334589999


Q ss_pred             CCCCCCeEEEEEEEeCCc
Q psy12421        119 CKPEDSGEYKCVATNKHG  136 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g  136 (168)
                      ++.+|.+.|.|......+
T Consensus        86 L~~eDtAvYYCAr~~~~~  103 (118)
T d2fbjh1          86 VRSEDTALYYCARLHYYG  103 (118)
T ss_dssp             CCGGGCEEEEEEEEETTT
T ss_pred             cCCCcceEEEeeEecCCC
Confidence            999999999997665443

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.12  E-value=0.0032  Score=37.51  Aligned_cols=69  Identities=19%  Similarity=0.430  Sum_probs=46.0

Q ss_pred             CCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------C------------CCCeEEEec--CCEEEEEEccCC
Q psy12421         65 RPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------S------------KRDYSMSYS--DGVVSMEIIDCK  120 (168)
Q Consensus        65 ~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------~------------~~~~~~~~~--~~~~~l~i~~~~  120 (168)
                      ....+..|++++|.|.++|..  .-.+.|++..  +.+      .            ..++.+...  .....|.|.+++
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL~   87 (121)
T d1ol0a_           8 GGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSLR   87 (121)
T ss_dssp             ECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeecc
Confidence            345678899999999998743  3356787641  111      0            123334332  334569999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12421        121 PEDSGEYKCVATN  133 (168)
Q Consensus       121 ~~d~G~Y~C~a~n  133 (168)
                      .+|.+.|.|....
T Consensus        88 ~eDtAvYYCAr~~  100 (121)
T d1ol0a_          88 AEDTAVYYCAREP  100 (121)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccceEEEEEEec
Confidence            9999999996543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=0.0015  Score=38.19  Aligned_cols=65  Identities=22%  Similarity=0.356  Sum_probs=39.2

Q ss_pred             cCCcEEEEEEEecc-CC-CeeEEEeCCEECCCCCeEE----EecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         71 VRQTCKLLCCLSGK-PP-PTVKWYKGNRELSKRDYSM----SYSDGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        71 ~g~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~~----~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .+..+.|.|.+.|. |. ..+.|.++|..+.......    ...++.    +.|.|..-.......|+|.+....
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~   93 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKT   93 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            35678999999984 43 4799999998765421111    112221    234444333334567999998654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.09  E-value=0.003  Score=37.92  Aligned_cols=71  Identities=18%  Similarity=0.293  Sum_probs=46.8

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEE------C-C-----------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRE------L-S-----------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~------~-~-----------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.  |+-      + .           ..++.+...  .+...|.|.+
T Consensus         6 esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~s   85 (125)
T d1rihh1           6 QSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNS   85 (125)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeec
Confidence            44456778899999999998744  335788763  110      1 0           123333332  3344689999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDtAvYYCAR~~  100 (125)
T d1rihh1          86 LTSEDSAVYYCARES  100 (125)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCcccceEEEEeeeC
Confidence            999999999997543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.09  E-value=0.0041  Score=36.99  Aligned_cols=69  Identities=25%  Similarity=0.460  Sum_probs=46.0

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC--------C----------CCCeEEEec--CCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL--------S----------KRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~--------~----------~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++..  +-+        .          ..++.+...  .....|.|.++
T Consensus         7 SG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~L   86 (121)
T d2p49b1           7 SGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDSL   86 (121)
T ss_dssp             EECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeeec
Confidence            3346778899999999998754  4457888742  111        0          123334332  23445899999


Q ss_pred             CCCCCeEEEEEEE
Q psy12421        120 KPEDSGEYKCVAT  132 (168)
Q Consensus       120 ~~~d~G~Y~C~a~  132 (168)
                      +.+|.+.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (121)
T d2p49b1          87 KPEDTATYYCAAG   99 (121)
T ss_dssp             CGGGCEEEEEEES
T ss_pred             cccceeEEeeecc
Confidence            9999999999653

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.08  E-value=0.00062  Score=39.52  Aligned_cols=64  Identities=16%  Similarity=0.329  Sum_probs=38.1

Q ss_pred             cCCcEEEEEEEec-cC-CCeeEEEeCCEECCCCC--eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeC
Q psy12421         71 VRQTCKLLCCLSG-KP-PPTVKWYKGNRELSKRD--YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p-~p~i~W~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+..+.|.|.+.| .| ...+.|.++|.......  ......++.    +.|.+..-.......|+|.+...
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~   89 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHE   89 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeC
Confidence            4678999999998 44 35789999997653210  111122221    23444433323455799998864

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.06  E-value=0.0032  Score=37.63  Aligned_cols=71  Identities=20%  Similarity=0.310  Sum_probs=46.8

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeC--C--EE----C-C-----------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKG--N--RE----L-S-----------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~--~--~~----~-~-----------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+..|++++|.|.++|...  -.+.|++.  |  ..    + .           ..++.+...  .+...|.|.+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~~   85 (124)
T d2b1hh1           6 QSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWSS   85 (124)
T ss_dssp             ECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEESS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeeec
Confidence            444567788999999999998543  35688873  1  10    0 0           123333332  3345689999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDTA~YYCAR~~  100 (124)
T d2b1hh1          86 LKPSDTALYYCARLG  100 (124)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccccceEEEEeecC
Confidence            999999999995443

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.06  E-value=0.00064  Score=39.42  Aligned_cols=63  Identities=16%  Similarity=0.359  Sum_probs=38.7

Q ss_pred             CCcEEEEEEEecc-C-CCeeEEEeCCEECCCCC--eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         72 RQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRD--YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        72 g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~--~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+.+.|.|.+.|. | ...+.|+++|.......  ......++    .+.|.+..-.......|+|.+...
T Consensus        18 ~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~   88 (101)
T d1cqka_          18 KDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHE   88 (101)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEEC
Confidence            4578999999984 5 45789999998765311  11222333    123444433333456799998865

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.05  E-value=0.0055  Score=36.20  Aligned_cols=71  Identities=17%  Similarity=0.309  Sum_probs=47.6

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeCC--EE------CC------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGN--RE------LS------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~--~~------~~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|...  -.+.|++.-  +.      +.            ..++.+...  .....|.|.+
T Consensus         5 esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~s   84 (117)
T d1um5h1           5 QSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELSS   84 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeecccc
Confidence            444567888999999999998543  367898741  10      10            123333332  3344699999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        85 L~~eDtAvYYCAr~~   99 (117)
T d1um5h1          85 LTSEDSAVYYCARSS   99 (117)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCCCcceEEEEeecc
Confidence            999999999996544

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.04  E-value=0.0063  Score=36.46  Aligned_cols=70  Identities=19%  Similarity=0.389  Sum_probs=46.3

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC-------C-----------CCCeEEEec--CCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL-------S-----------KRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~-------~-----------~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++.  |+-+       .           ..++.+...  .....|.|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL   86 (127)
T d2fx7h1           7 SGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSL   86 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeeccc
Confidence            3445677899999999999844  335788863  1100       0           123333332  23446899999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTavYYCAR~~  100 (127)
T d2fx7h1          87 RPEDTAVYYCAREG  100 (127)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccceEEEEeecc
Confidence            99999999997654

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.02  E-value=0.0086  Score=35.48  Aligned_cols=70  Identities=23%  Similarity=0.407  Sum_probs=46.4

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC-------C-------------CCCeEEEec--CCEEEEEEc
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL-------S-------------KRDYSMSYS--DGVVSMEII  117 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~-------~-------------~~~~~~~~~--~~~~~l~i~  117 (168)
                      .....+..|++++|.|.++|..  .-.+.|++.  |+.+       .             ..++.+...  .+...|.|.
T Consensus         7 sG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~   86 (120)
T d1dlfh_           7 SGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMN   86 (120)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceecccee
Confidence            3445677899999999998754  346788873  1111       0             123334332  334568999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy12421        118 DCKPEDSGEYKCVATN  133 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n  133 (168)
                      +++.+|.+.|.|....
T Consensus        87 ~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          87 TLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             SCCGGGCEEEEEEEEB
T ss_pred             eccCCCceEEEeeEec
Confidence            9999999999996543

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.02  E-value=0.003  Score=35.89  Aligned_cols=63  Identities=16%  Similarity=0.301  Sum_probs=36.6

Q ss_pred             CCcEEEEEEEecc-C-CCeeEEEeCCEECCCCCeE----EEecCC-EEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         72 RQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRDYS----MSYSDG-VVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        72 g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~~----~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +..+.|.|.+.|. | ...+.|.++|..+......    ....++ ........+...+...|+|.+...
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~ty~~~s~l~v~~~~~~~ytC~V~H~   84 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGTYQTWVATRICQGEEQRFTCYMEHS   84 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSCEEEEEEEEEETTCGGGEEEEEEET
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCcEEEEEEEEEcCCCCCEEEEEEEEC
Confidence            4578999999994 4 3478999999887542211    112222 111222223334445699998754

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.99  E-value=0.0061  Score=36.58  Aligned_cols=71  Identities=17%  Similarity=0.330  Sum_probs=47.2

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCC--eeEEEeCC--EEC----------------C--CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKGN--REL----------------S--KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~~--~~~----------------~--~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|....  .+.|++.-  +-+                +  ..++.+...  .+...|.|.+
T Consensus         6 esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~s   85 (128)
T d2nxyd1           6 ESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRN   85 (128)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeee
Confidence            3444667889999999999985533  46787631  100                0  123444433  3345689999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          86 LRSDDTAVYFCAGVY  100 (128)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             ccccCceEEEEeEEe
Confidence            999999999997654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.99  E-value=0.0032  Score=37.51  Aligned_cols=70  Identities=21%  Similarity=0.407  Sum_probs=46.4

Q ss_pred             cCCeEEecCCcEEEEEEEeccCC--CeeEEEeC--CEEC------C--------------CCCeEEEe--cCCEEEEEEc
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKG--NREL------S--------------KRDYSMSY--SDGVVSMEII  117 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~--~~~~------~--------------~~~~~~~~--~~~~~~l~i~  117 (168)
                      .....+..|++++|.|.++|...  -.+.|++.  |+-+      .              ..++.+..  ......|.|.
T Consensus         7 sg~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~   86 (122)
T d1q9rb1           7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMN   86 (122)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceecccee
Confidence            34467788999999999988543  35789864  1111      0              02333332  2334468999


Q ss_pred             cCCCCCCeEEEEEEEe
Q psy12421        118 DCKPEDSGEYKCVATN  133 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~n  133 (168)
                      +++.+|.+.|.|....
T Consensus        87 sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          87 TLRAEDSATYYCARDH  102 (122)
T ss_dssp             SCCGGGCEEEEEEECC
T ss_pred             eeccCcceEEEEEecC
Confidence            9999999999997543

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.99  E-value=0.0044  Score=37.33  Aligned_cols=71  Identities=15%  Similarity=0.309  Sum_probs=47.5

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC-------C-----------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL-------S-----------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~-------~-----------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.  |+-+       .           ..++.+...  .+...|.|.+
T Consensus         5 esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~~~   84 (130)
T d1rhhb1           5 QSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMELTN   84 (130)
T ss_dssp             ECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEeec
Confidence            44556778899999999999854  335788873  1100       0           123334332  3344689999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        85 L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          85 LRSDDTAVYYCARDF   99 (130)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCCcEEEEEEeec
Confidence            999999999997653

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.98  E-value=0.0063  Score=36.75  Aligned_cols=88  Identities=19%  Similarity=0.334  Sum_probs=53.3

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC------C------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL------S------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~------~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.  |+-+      .            ..++.+...  .....|.|.+
T Consensus         6 eSG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~   85 (135)
T d1ieha_           6 ASGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNS   85 (135)
T ss_dssp             EECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEES
T ss_pred             eECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEee
Confidence            33446778899999999999854  335788864  1111      0            123333332  2234689999


Q ss_pred             CCCCCCeEEEEEEEeCCcce--EEEEEEEEeeCC
Q psy12421        119 CKPEDSGEYKCVATNKHGTD--ETNCVVIVESEE  150 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~~~p  150 (168)
                      ++.+|.+.|.|......+..  -....|.|....
T Consensus        86 L~~eDTAvYYCAr~~~~~~d~WGqGT~VTVsSas  119 (135)
T d1ieha_          86 LKSEDTAVYYCAKYSGGALDAWGQGTQVTVSSQS  119 (135)
T ss_dssp             CCSSSCEEEEEEEBSSSSBCCCSCCEEEEECSSC
T ss_pred             eCcccceeeEEEEecCCccceeCCCEEEEEECCC
Confidence            99999999999765433222  112345565543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.98  E-value=0.0037  Score=36.95  Aligned_cols=72  Identities=17%  Similarity=0.265  Sum_probs=47.9

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--E-------ECC-----------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--R-------ELS-----------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~-------~~~-----------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.-  +       ...           ..++.+..  ..+...|.+.+
T Consensus         6 esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~   85 (117)
T d1jpth1           6 ESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNS   85 (117)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccc
Confidence            34456788899999999999854  4467888741  1       100           12233332  23344689999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12421        119 CKPEDSGEYKCVATNK  134 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~  134 (168)
                      ++.+|.+.|.|.....
T Consensus        86 L~~eDTAvYYCAr~~~  101 (117)
T d1jpth1          86 LRAEDTAVYYCARDTA  101 (117)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             cCCCCceEEEEeecCC
Confidence            9999999999965543

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0034  Score=35.80  Aligned_cols=73  Identities=16%  Similarity=0.097  Sum_probs=48.4

Q ss_pred             eEEecCCcEEEEEEEeccCCCeeE-EEeCCEECCCCC--eEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEE
Q psy12421         67 RVMQVRQTCKLLCCLSGKPPPTVK-WYKGNRELSKRD--YSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCV  143 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p~p~i~-W~~~~~~~~~~~--~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  143 (168)
                      ..+.+|+.+.+.|.++ .|...+. |...+..+....  .......   -+.|.+....+.|.|.|.|... |....+..
T Consensus        15 V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~~Dpk~---Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~y   89 (95)
T d1fltx_          15 IHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRIIWDSRK---GFIISNATYKEIGLLTCEATVN-GHLYKTNY   89 (95)
T ss_dssp             EEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEEEETTT---EEEESSCCGGGCEEEEEEEEET-TEEEEEEE
T ss_pred             EEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEEECCCC---CEEEeCCCcccCeEEEEEEEEC-CEEEEEEE
Confidence            5677899999999985 4666654 444555443322  2222223   4889999999999999999765 45444444


Q ss_pred             E
Q psy12421        144 V  144 (168)
Q Consensus       144 l  144 (168)
                      |
T Consensus        90 l   90 (95)
T d1fltx_          90 L   90 (95)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.98  E-value=0.0044  Score=37.25  Aligned_cols=70  Identities=27%  Similarity=0.534  Sum_probs=46.3

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE---C--------C------------CCCeEEEe--cCCEEEE
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE---L--------S------------KRDYSMSY--SDGVVSM  114 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~---~--------~------------~~~~~~~~--~~~~~~l  114 (168)
                      .....+..|++++|.|.++|..  .-.+.|++..  +.   +        .            ..++.+..  ......|
T Consensus         7 sG~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L   86 (127)
T d1i3ua_           7 SGGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNL   86 (127)
T ss_dssp             ESCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEE
T ss_pred             ECCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEE
Confidence            3345677899999999999743  3467898741  10   0        0            01333332  2344569


Q ss_pred             EEccCCCCCCeEEEEEEEe
Q psy12421        115 EIIDCKPEDSGEYKCVATN  133 (168)
Q Consensus       115 ~i~~~~~~d~G~Y~C~a~n  133 (168)
                      .|.+++.+|.+.|.|....
T Consensus        87 ~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          87 QMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             EECSCCGGGCEEEEEEEES
T ss_pred             eeecccccceeEEEEEEEe
Confidence            9999999999999997653

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.97  E-value=0.0052  Score=36.88  Aligned_cols=71  Identities=23%  Similarity=0.398  Sum_probs=46.6

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC----EE----CC------------CCCeEEEec--CCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN----RE----LS------------KRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~----~~----~~------------~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++..    ..    +.            ..++.+...  .....|.|.++
T Consensus         7 sG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L   86 (127)
T d2fb4h1           7 SGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSL   86 (127)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeee
Confidence            3445677899999999998843  3457888742    10    11            122333332  33446899999


Q ss_pred             CCCCCeEEEEEEEeC
Q psy12421        120 KPEDSGEYKCVATNK  134 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n~  134 (168)
                      +.+|.+.|.|.....
T Consensus        87 ~~eDTA~YYCAr~~~  101 (127)
T d2fb4h1          87 RPEDTGVYFCARDGG  101 (127)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             eecceeEEEEEEecC
Confidence            999999999976543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.97  E-value=0.0022  Score=37.94  Aligned_cols=70  Identities=23%  Similarity=0.396  Sum_probs=46.4

Q ss_pred             cCCeEEecCCcEEEEEEEeccCC--CeeEEEeC--CEEC------C-----------CCCeEEEe--cCCEEEEEEccCC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKG--NREL------S-----------KRDYSMSY--SDGVVSMEIIDCK  120 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~--~~~~------~-----------~~~~~~~~--~~~~~~l~i~~~~  120 (168)
                      .....+..|++++|.|.++|...  -.+.|++.  |+.+      .           ..++.+..  ......|.|.+++
T Consensus         7 sG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~   86 (116)
T d1a2yb_           7 SGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLH   86 (116)
T ss_dssp             ECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             ECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeee
Confidence            33456788999999999998543  35778874  1111      0           01223332  2334569999999


Q ss_pred             CCCCeEEEEEEEe
Q psy12421        121 PEDSGEYKCVATN  133 (168)
Q Consensus       121 ~~d~G~Y~C~a~n  133 (168)
                      .+|.+.|.|....
T Consensus        87 ~eDTAvYYCAr~~   99 (116)
T d1a2yb_          87 TDDTARYYCARER   99 (116)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             eccceEEEEEEeC
Confidence            9999999997544

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.96  E-value=0.0038  Score=37.41  Aligned_cols=69  Identities=16%  Similarity=0.327  Sum_probs=46.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEE------CC------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRE------LS------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~------~~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+..|++++|.|.++|..  .-.+.|++.  |+-      +.            ..++.+...  .....|.|.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~   85 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence            44456788899999999999844  335688873  111      11            123333332  3344689999


Q ss_pred             CCCCCCeEEEEEE
Q psy12421        119 CKPEDSGEYKCVA  131 (168)
Q Consensus       119 ~~~~d~G~Y~C~a  131 (168)
                      ++.+|.+.|.|..
T Consensus        86 L~~eDtAvYYCAR   98 (127)
T d1n0xh1          86 LRSADTAVYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEEe
Confidence            9999999999953

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.96  E-value=0.0012  Score=39.89  Aligned_cols=70  Identities=19%  Similarity=0.357  Sum_probs=46.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC-------C-----------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL-------S-----------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~-------~-----------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+..|++++|.|.++|..  .-.+.|++.  ++-+       .           ..++.+...  .....|.|.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~s   85 (130)
T d1rzga1           6 QSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSS   85 (130)
T ss_dssp             ECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeee
Confidence            34456678899999999998743  446788874  1111       0           122333332  2334588999


Q ss_pred             CCCCCCeEEEEEEE
Q psy12421        119 CKPEDSGEYKCVAT  132 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~  132 (168)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDtA~YYCAr~   99 (130)
T d1rzga1          86 LRSEDTAVFYCASP   99 (130)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCCCccEEEEEEEe
Confidence            99999999999643

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.95  E-value=0.00074  Score=39.59  Aligned_cols=79  Identities=16%  Similarity=0.394  Sum_probs=45.1

Q ss_pred             CCeEEee-cCCeEEecCCcEEEEEEEecc-CC-CeeEEEeCCEECCCCCeE----EE---ecCC----EEEEEEccCCCC
Q psy12421         57 APNFTFL-LRPRVMQVRQTCKLLCCLSGK-PP-PTVKWYKGNRELSKRDYS----MS---YSDG----VVSMEIIDCKPE  122 (168)
Q Consensus        57 ~p~~~~~-~~~~~~~~g~~~~l~C~~~g~-p~-p~i~W~~~~~~~~~~~~~----~~---~~~~----~~~l~i~~~~~~  122 (168)
                      +|.+..- +....+..++.+.|.|.+.|. |. ..+.|+++|..+......    ..   ..++    .+.|.|..-...
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~   83 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWK   83 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhC
Confidence            4555432 222334467889999999984 43 379999999887542111    00   1122    123444433333


Q ss_pred             CCeEEEEEEEeCC
Q psy12421        123 DSGEYKCVATNKH  135 (168)
Q Consensus       123 d~G~Y~C~a~n~~  135 (168)
                      ....|+|.+....
T Consensus        84 ~g~~ytC~V~H~s   96 (108)
T d1ow0a2          84 KGDTFSCMVGHEA   96 (108)
T ss_dssp             HTCCEEEEEECTT
T ss_pred             CCCEEEEEEEeCC
Confidence            4567999987653

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.94  E-value=0.0017  Score=38.30  Aligned_cols=70  Identities=19%  Similarity=0.347  Sum_probs=46.2

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEE------C-C-----------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRE------L-S-----------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~------~-~-----------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      .+....+..|++++|.|.++|..  .-.+.|++.  |+-      + .           ..++.+...  .....|.+.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~s   85 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLSS   85 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEecccc
Confidence            34456778899999999999844  345678773  110      1 0           123344332  3345688999


Q ss_pred             CCCCCCeEEEEEEE
Q psy12421        119 CKPEDSGEYKCVAT  132 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~  132 (168)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (116)
T d1mjuh1          86 LTSDDSAVYYCANK   99 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEccc
Confidence            99999999999643

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.94  E-value=0.0053  Score=36.60  Aligned_cols=72  Identities=22%  Similarity=0.406  Sum_probs=47.3

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE------CC------------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE------LS------------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~------~~------------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++..  +.      +.            ..++.+..  ..+...|.|.+
T Consensus         6 esG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~   85 (123)
T d1mqkh_           6 ESGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSS   85 (123)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceee
Confidence            33446777899999999998854  3356888741  10      10            12333332  23344589999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12421        119 CKPEDSGEYKCVATNK  134 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~  134 (168)
                      ++.+|.+.|.|.....
T Consensus        86 L~~eDtAvYYCAr~~~  101 (123)
T d1mqkh_          86 LKSEDTAMYYCVRHEY  101 (123)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             eccCcccceeEEecCC
Confidence            9999999999976544

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.92  E-value=0.0047  Score=36.99  Aligned_cols=70  Identities=19%  Similarity=0.317  Sum_probs=46.8

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeC--CEE------C--C----------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKG--NRE------L--S----------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~--~~~------~--~----------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|...  -.+.|++.  |+-      +  .          ..++.+...  .....|.|.+
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~   84 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS   84 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence            344567788999999999998543  35678763  110      0  0          123334332  3445689999


Q ss_pred             CCCCCCeEEEEEEE
Q psy12421        119 CKPEDSGEYKCVAT  132 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~  132 (168)
                      ++.+|.+.|.|...
T Consensus        85 L~~eDTAvYYCAr~   98 (126)
T d1lmka1          85 LTSEDSAVYYCARG   98 (126)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999643

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.92  E-value=0.008  Score=35.52  Aligned_cols=72  Identities=18%  Similarity=0.363  Sum_probs=47.7

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------C-----------CCCeEEEec--CCEEEEEEccCC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------S-----------KRDYSMSYS--DGVVSMEIIDCK  120 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------~-----------~~~~~~~~~--~~~~~l~i~~~~  120 (168)
                      .....+..|++++|.|.++|..  .-.+.|++..  +.+      .           ..++.+...  .....|.|.+++
T Consensus         7 Sg~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~   86 (118)
T d1lo4h1           7 TGGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLR   86 (118)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCC
T ss_pred             ECCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeecccccc
Confidence            3345677899999999999854  3367888741  111      0           123334332  334468999999


Q ss_pred             CCCCeEEEEEEEeCC
Q psy12421        121 PEDSGEYKCVATNKH  135 (168)
Q Consensus       121 ~~d~G~Y~C~a~n~~  135 (168)
                      .+|.+.|.|......
T Consensus        87 ~eDtA~YyCAr~~~~  101 (118)
T d1lo4h1          87 SEDTAIYYCARGTSF  101 (118)
T ss_dssp             GGGCEEEEEEEEETT
T ss_pred             CCcceEEEecccCCC
Confidence            999999999755443

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.0066  Score=35.16  Aligned_cols=76  Identities=13%  Similarity=0.176  Sum_probs=41.6

Q ss_pred             eEEecCCcEEEEEEEec-cC-CCeeEEEeCCEECCCCC--eEEEecCCE----EEEEEccCCCC--CCeEEEEEEEeCCc
Q psy12421         67 RVMQVRQTCKLLCCLSG-KP-PPTVKWYKGNRELSKRD--YSMSYSDGV----VSMEIIDCKPE--DSGEYKCVATNKHG  136 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g-~p-~p~i~W~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~--d~G~Y~C~a~n~~g  136 (168)
                      ........+.|.|.+.| .| ...+.|.+++.......  ......++.    +.|.+..-...  ....|+|.+....+
T Consensus        16 ~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~   95 (105)
T d1dn0b2          16 NSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNG   95 (105)
T ss_dssp             -----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTC
T ss_pred             cccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCC
Confidence            33445678999999998 54 35789999886543211  011113332    23555443322  23479999998766


Q ss_pred             ceEEEE
Q psy12421        137 TDETNC  142 (168)
Q Consensus       137 ~~~~~~  142 (168)
                      .....+
T Consensus        96 ~~~~~v  101 (105)
T d1dn0b2          96 NKEKNV  101 (105)
T ss_dssp             CEEEEE
T ss_pred             CEEeEE
Confidence            544433

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.90  E-value=0.0063  Score=35.92  Aligned_cols=71  Identities=20%  Similarity=0.347  Sum_probs=47.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeCC--E--E----C--C----------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGN--R--E----L--S----------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~--~--~----~--~----------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|...  -.+.|++.-  +  .    +  .          ..++.+...  .....|.|.+
T Consensus         6 esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~   85 (117)
T d1jnhb1           6 QSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNS   85 (117)
T ss_dssp             ECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccc
Confidence            334456678999999999998543  357888731  1  0    0  0          123444432  2344689999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (117)
T d1jnhb1          86 LTSEDSAVYSCSRGR  100 (117)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCCCcceEEEEeecC
Confidence            999999999996543

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.89  E-value=0.0038  Score=37.16  Aligned_cols=71  Identities=18%  Similarity=0.348  Sum_probs=47.5

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE------CC------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE------LS------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~------~~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.-  +.      +.            ..++.+...  .+...|.|.+
T Consensus         7 ~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~~~   86 (122)
T d1vgeh1           7 QSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGLSS   86 (122)
T ss_dssp             ECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecccc
Confidence            34556788999999999998854  3357888731  10      10            123334332  3344589999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        87 L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          87 LRPEDTAVYYCARDP  101 (122)
T ss_dssp             CCGGGCEEEEEEEET
T ss_pred             cCCCcceEEEEeecC
Confidence            999999999996553

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.88  E-value=0.0058  Score=36.42  Aligned_cols=70  Identities=24%  Similarity=0.360  Sum_probs=46.6

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------C------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------S------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.-  +-+      .            ..++.+...  .....|.|.+
T Consensus         6 esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~s   85 (124)
T d1yedb1           6 QSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSS   85 (124)
T ss_dssp             ECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEES
T ss_pred             eeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccc
Confidence            34456678899999999999854  3357888731  111      0            123334332  3344689999


Q ss_pred             CCCCCCeEEEEEEE
Q psy12421        119 CKPEDSGEYKCVAT  132 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~  132 (168)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDTAvYYCAR~   99 (124)
T d1yedb1          86 LKSEDSAVYFCTRW   99 (124)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCCCcceEEEeccc
Confidence            99999999999643

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00091  Score=38.77  Aligned_cols=65  Identities=15%  Similarity=0.340  Sum_probs=39.3

Q ss_pred             cCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCC--eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         71 VRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRD--YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        71 ~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      .++.+.|.|.+.|. | ...+.|+++|.......  ......++.    +.|.+..-.....-.|+|.+....
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~   90 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA   90 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEECCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            36678999999984 4 34789999998654311  112223331    235554333334456999998753

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.87  E-value=0.015  Score=34.64  Aligned_cols=70  Identities=20%  Similarity=0.360  Sum_probs=46.7

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC----EE----CC------------CCCeEEEec--CCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN----RE----LS------------KRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~----~~----~~------------~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++.-    ..    +.            ..++.+...  .....|.|.++
T Consensus         7 SG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL   86 (125)
T d1op3h1           7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (125)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeecc
Confidence            3346778899999999998743  3457888741    10    10            123444332  33456899999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (125)
T d1op3h1          87 RVEDTAIYYCARKG  100 (125)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCccceeEeEeecc
Confidence            99999999997553

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.86  E-value=0.0011  Score=38.48  Aligned_cols=63  Identities=10%  Similarity=0.232  Sum_probs=38.4

Q ss_pred             CCcEEEEEEEeccC--CCeeEEEeCCEECCCCC--eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeC
Q psy12421         72 RQTCKLLCCLSGKP--PPTVKWYKGNRELSKRD--YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        72 g~~~~l~C~~~g~p--~p~i~W~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      .+.+.|.|.+.|.-  ...+.|.++|.......  ......++.    +.|.|..-.......|+|.+...
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~   89 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHE   89 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECT
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCeeccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeC
Confidence            56789999999844  34789999998764311  111223332    12455443334455799999875

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.79  E-value=0.0042  Score=36.75  Aligned_cols=69  Identities=26%  Similarity=0.392  Sum_probs=46.0

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeC--CEE------CC------------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKG--NRE------LS------------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~--~~~------~~------------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|...  -.+.|++.  |+.      +.            ..++.+..  ..+...|.|.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~s   85 (118)
T d2jelh1           6 QSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELAR   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeecccc
Confidence            445567788999999999988543  36788874  110      11            12233332  23344689999


Q ss_pred             CCCCCCeEEEEEE
Q psy12421        119 CKPEDSGEYKCVA  131 (168)
Q Consensus       119 ~~~~d~G~Y~C~a  131 (168)
                      ++.+|.+.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (118)
T d2jelh1          86 LTSEDSAIYYCAR   98 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceeeeEEE
Confidence            9999999999954

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.79  E-value=0.013  Score=35.29  Aligned_cols=72  Identities=15%  Similarity=0.308  Sum_probs=47.4

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCCC--eeEEEeC--CEE------C------------CCCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPPP--TVKWYKG--NRE------L------------SKRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~p--~i~W~~~--~~~------~------------~~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|...-  .+.|++.  ++-      +            -..++.+...  .+...|.+.+
T Consensus         5 esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~   84 (133)
T d1rzfh1           5 QSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRG   84 (133)
T ss_dssp             ECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeecc
Confidence            3445677889999999999885433  5678763  110      1            0123444333  3345688999


Q ss_pred             CCCCCCeEEEEEEEeC
Q psy12421        119 CKPEDSGEYKCVATNK  134 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n~  134 (168)
                      ++.+|.+.|.|.....
T Consensus        85 L~~eDtA~YYCAr~~~  100 (133)
T d1rzfh1          85 LRSDDTAVYYCASNSI  100 (133)
T ss_dssp             CCGGGCEEEEEEEEEC
T ss_pred             CCCCCCEEEEeeeccC
Confidence            9999999999965543

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.75  E-value=0.0026  Score=38.21  Aligned_cols=68  Identities=24%  Similarity=0.497  Sum_probs=44.0

Q ss_pred             CeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC--------C----------CCCeEEEec--CCEEEEEEccCCC
Q psy12421         66 PRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL--------S----------KRDYSMSYS--DGVVSMEIIDCKP  121 (168)
Q Consensus        66 ~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~--------~----------~~~~~~~~~--~~~~~l~i~~~~~  121 (168)
                      ...+..|++++|.|.++|..  .-.+.|++.-  +.+        .          ..++.+...  .....|.|.+++.
T Consensus         8 ~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l~~   87 (126)
T d1rjca1           8 GGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSLKP   87 (126)
T ss_dssp             CEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEeccCc
Confidence            35677899999999998744  3356888741  111        0          123344332  2334489999999


Q ss_pred             CCCeEEEEEEEe
Q psy12421        122 EDSGEYKCVATN  133 (168)
Q Consensus       122 ~d~G~Y~C~a~n  133 (168)
                      +|.+.|.|....
T Consensus        88 eDTAvYYCAr~~   99 (126)
T d1rjca1          88 EDTAMYYCAADT   99 (126)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceeEEEeec
Confidence            999999997543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.75  E-value=0.0016  Score=38.03  Aligned_cols=64  Identities=27%  Similarity=0.552  Sum_probs=41.2

Q ss_pred             EEecCCcEEEEEEEeccC--CCeeEEEeCC--EEC------C-----------CCCeEEEec--CCEEEEEEccCCCCCC
Q psy12421         68 VMQVRQTCKLLCCLSGKP--PPTVKWYKGN--REL------S-----------KRDYSMSYS--DGVVSMEIIDCKPEDS  124 (168)
Q Consensus        68 ~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~~------~-----------~~~~~~~~~--~~~~~l~i~~~~~~d~  124 (168)
                      .+..|++++|.|.++|..  .-.+.|+++.  +-+      .           ..++.+...  .....|.|.+++.+|.
T Consensus         4 lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDt   83 (107)
T d1sjva_           4 LVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDT   83 (107)
T ss_dssp             CCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGC
T ss_pred             EecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccc
Confidence            356799999999988742  3456788741  111      0           123344332  2334699999999999


Q ss_pred             eEEEEEE
Q psy12421        125 GEYKCVA  131 (168)
Q Consensus       125 G~Y~C~a  131 (168)
                      +.|.|..
T Consensus        84 AvYyCA~   90 (107)
T d1sjva_          84 AVYYCYT   90 (107)
T ss_dssp             SEEEEEE
T ss_pred             eeeeEec
Confidence            9999964

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.71  E-value=0.0015  Score=38.13  Aligned_cols=67  Identities=13%  Similarity=0.285  Sum_probs=38.6

Q ss_pred             EecCCcEEEEEEEeccCCC--eeEEEeCCEECCCCCe---EEEecCCE---EEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         69 MQVRQTCKLLCCLSGKPPP--TVKWYKGNRELSKRDY---SMSYSDGV---VSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~---~~~~~~~~---~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      +..+..+.|.|.+.|.-+.  .+.|+++|..+.....   .....+..   +.|.+..-..  ...|+|.+......
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w--~~~ytC~V~H~s~~   95 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSL--DKEHRCIVRHENNK   95 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGG--GSCEEEEEEETTSG
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccC--CCeEEEEEEECCCC
Confidence            4456789999999984433  6899999876643211   11111222   1344433222  23699999876443

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.70  E-value=0.011  Score=35.01  Aligned_cols=70  Identities=19%  Similarity=0.318  Sum_probs=46.4

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeCC--EE------CC------------CCCeEEEec--CCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKGN--RE------LS------------KRDYSMSYS--DGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~~--~~------~~------------~~~~~~~~~--~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|...  -.+.|++.-  +-      +.            ..++.+...  .+...|.|.+
T Consensus         6 esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~   85 (120)
T d1ad9b1           6 QSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSS   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccc
Confidence            344567788999999999998443  357887641  10      10            123333322  3445689999


Q ss_pred             CCCCCCeEEEEEEE
Q psy12421        119 CKPEDSGEYKCVAT  132 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~  132 (168)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          86 LRSEDTAFYFCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEEEc
Confidence            99999999999654

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.67  E-value=0.0022  Score=37.96  Aligned_cols=69  Identities=23%  Similarity=0.439  Sum_probs=45.6

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEE------CC-C-----------CCeEEEec--CCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRE------LS-K-----------RDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~------~~-~-----------~~~~~~~~--~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++.  |+.      +. .           .++.+...  .....|.+.++
T Consensus         7 sG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~sL   86 (117)
T d1b2wh1           7 SGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNSL   86 (117)
T ss_dssp             CCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeeccc
Confidence            3446778999999999998743  346678873  110      10 1           23334322  33456899999


Q ss_pred             CCCCCeEEEEEEE
Q psy12421        120 KPEDSGEYKCVAT  132 (168)
Q Consensus       120 ~~~d~G~Y~C~a~  132 (168)
                      +.+|.+.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (117)
T d1b2wh1          87 RPEDTAVYYCARG   99 (117)
T ss_dssp             CGGGCEEEECCEE
T ss_pred             cCCcceEEEEccc
Confidence            9999999999643

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=96.63  E-value=0.011  Score=35.61  Aligned_cols=69  Identities=17%  Similarity=0.389  Sum_probs=45.3

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC--EE------CC--------------CCCeEEEec--CCEEEEEEc
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN--RE------LS--------------KRDYSMSYS--DGVVSMEII  117 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~--~~------~~--------------~~~~~~~~~--~~~~~l~i~  117 (168)
                      .....+..|++++|.|.++|..  .-.+.|++.-  +.      +.              ..++.+...  .....|.|.
T Consensus         7 sG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~   86 (131)
T d3c2ah1           7 SGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMN   86 (131)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeeccee
Confidence            3345678899999999998744  3367787631  10      00              122333322  334568999


Q ss_pred             cCCCCCCeEEEEEEE
Q psy12421        118 DCKPEDSGEYKCVAT  132 (168)
Q Consensus       118 ~~~~~d~G~Y~C~a~  132 (168)
                      +++.+|.+.|.|...
T Consensus        87 ~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          87 SLKTEDTAVYSCTTD  101 (131)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccccCCceEEEEecc
Confidence            999999999999654

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.62  E-value=0.006  Score=36.09  Aligned_cols=71  Identities=20%  Similarity=0.327  Sum_probs=46.3

Q ss_pred             ecCCeEEecCCcEEEEEEEeccC--CCeeEEEeC--CEE------C-C-----------CCCeEEEe--cCCEEEEEEcc
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NRE------L-S-----------KRDYSMSY--SDGVVSMEIID  118 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~------~-~-----------~~~~~~~~--~~~~~~l~i~~  118 (168)
                      ......+..|++++|.|.++|..  .-.+.|++.  |+-      + .           ..++.+..  ......|.|.+
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~   85 (118)
T d1ct8b1           6 ESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSS   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccc
Confidence            34456778899999999999844  336778763  110      1 0           11223322  23445689999


Q ss_pred             CCCCCCeEEEEEEEe
Q psy12421        119 CKPEDSGEYKCVATN  133 (168)
Q Consensus       119 ~~~~d~G~Y~C~a~n  133 (168)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (118)
T d1ct8b1          86 LTTEDSAIYYCARYR  100 (118)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             cCCCcceEEEEeeec
Confidence            999999999996543

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.61  E-value=0.0078  Score=35.84  Aligned_cols=70  Identities=21%  Similarity=0.375  Sum_probs=46.2

Q ss_pred             cCCeEEecCCcEEEEEEEeccC--CCeeEEEeCC----EE----C-C-----------CCCeEEEec--CCEEEEEEccC
Q psy12421         64 LRPRVMQVRQTCKLLCCLSGKP--PPTVKWYKGN----RE----L-S-----------KRDYSMSYS--DGVVSMEIIDC  119 (168)
Q Consensus        64 ~~~~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~----~~----~-~-----------~~~~~~~~~--~~~~~l~i~~~  119 (168)
                      .....+..|++++|.|.++|..  .-.+.|++.-    ..    + .           ..++.+...  .....|.|.++
T Consensus         7 sG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL   86 (122)
T d1bz7b1           7 SGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSL   86 (122)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeee
Confidence            3345677899999999999854  3357888741    10    1 0           123333322  23446889999


Q ss_pred             CCCCCeEEEEEEEe
Q psy12421        120 KPEDSGEYKCVATN  133 (168)
Q Consensus       120 ~~~d~G~Y~C~a~n  133 (168)
                      +.+|.+.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          87 RSEDTAIYYCTRGG  100 (122)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCceEEEeecCC
Confidence            99999999996654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=96.51  E-value=0.0033  Score=37.83  Aligned_cols=80  Identities=11%  Similarity=0.249  Sum_probs=45.2

Q ss_pred             CCCeEEeecCC-eEEecCCcEEEEEEEeccC--CCeeEEEeCCEECCCCCeE----EE----ecCCE----EEEEEccCC
Q psy12421         56 SAPNFTFLLRP-RVMQVRQTCKLLCCLSGKP--PPTVKWYKGNRELSKRDYS----MS----YSDGV----VSMEIIDCK  120 (168)
Q Consensus        56 ~~p~~~~~~~~-~~~~~g~~~~l~C~~~g~p--~p~i~W~~~~~~~~~~~~~----~~----~~~~~----~~l~i~~~~  120 (168)
                      .||.+..-..+ ..+..+..++|.|.+.|.-  ...+.|+++|..+......    ..    ..++.    +.|.+..-.
T Consensus         3 ~PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           3 FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             BCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             cCCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            45665543222 2234467789999999844  3368999999876432100    00    01221    245555444


Q ss_pred             CCCCe-EEEEEEEeCC
Q psy12421        121 PEDSG-EYKCVATNKH  135 (168)
Q Consensus       121 ~~d~G-~Y~C~a~n~~  135 (168)
                      ..+.| .|+|.+....
T Consensus        83 W~~~g~~ytC~V~H~~   98 (127)
T d1ogae2          83 WQNPRNHFRCQVQFYG   98 (127)
T ss_dssp             HTCTTCEEEEEEEECC
T ss_pred             hCCCCCEEEEEEEECC
Confidence            44544 6999998653

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=96.48  E-value=0.0075  Score=35.78  Aligned_cols=80  Identities=15%  Similarity=0.287  Sum_probs=44.9

Q ss_pred             CCCeEEeecCC-e-EEecCCcEEEEEEEecc-C---CCeeEEEeCCEECCCCC--eEEEecCCE----EEEEEccCCCCC
Q psy12421         56 SAPNFTFLLRP-R-VMQVRQTCKLLCCLSGK-P---PPTVKWYKGNRELSKRD--YSMSYSDGV----VSMEIIDCKPED  123 (168)
Q Consensus        56 ~~p~~~~~~~~-~-~~~~g~~~~l~C~~~g~-p---~p~i~W~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d  123 (168)
                      .+|.+...+.. . ....+..+.|.|.+.|. |   ...++|++++..+....  ......++.    +.|.|..-....
T Consensus        14 ~~PsV~i~pPs~~e~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~   93 (119)
T d1igtb3          14 GGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMS   93 (119)
T ss_dssp             CCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHT
T ss_pred             cCCEEEEECCChHHhcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCC
Confidence            34555443322 1 23457789999999884 4   34788999998775321  112223331    123333222234


Q ss_pred             CeEEEEEEEeCC
Q psy12421        124 SGEYKCVATNKH  135 (168)
Q Consensus       124 ~G~Y~C~a~n~~  135 (168)
                      ...|+|.+....
T Consensus        94 g~~ytC~V~H~~  105 (119)
T d1igtb3          94 GKEFKCKVNNKD  105 (119)
T ss_dssp             TCEEEEEEECTT
T ss_pred             CCeEEEEEEECC
Confidence            567999998754

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.44  E-value=0.00014  Score=42.54  Aligned_cols=66  Identities=14%  Similarity=0.215  Sum_probs=38.8

Q ss_pred             cCCcEEEEEEEec-cCC-CeeEEEeCCEECCCCCe--EEEecCCE----EEEEEccCCCCCCeEEEEEEEeCCc
Q psy12421         71 VRQTCKLLCCLSG-KPP-PTVKWYKGNRELSKRDY--SMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHG  136 (168)
Q Consensus        71 ~g~~~~l~C~~~g-~p~-p~i~W~~~~~~~~~~~~--~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g  136 (168)
                      .+..+.|.|.+.| .|. ..+.|.++|..+.....  .....++.    +.|.+......+...|+|.+.....
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~   92 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGE   92 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTT
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCC
Confidence            3567889999998 443 47999999987753211  11112231    1233332223345679999987643

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.40  E-value=0.013  Score=34.75  Aligned_cols=71  Identities=14%  Similarity=0.296  Sum_probs=46.3

Q ss_pred             ecCCeEEecCCcEEEEEEEeccCC--CeeEEEeC--CEE------CC--------------CCCeEEEec--CCEEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLSGKPP--PTVKWYKG--NRE------LS--------------KRDYSMSYS--DGVVSMEI  116 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~g~p~--p~i~W~~~--~~~------~~--------------~~~~~~~~~--~~~~~l~i  116 (168)
                      ......+..|++++|.|.++|...  -.+.|++.  |+-      +.              ..++.+...  .....|.+
T Consensus         6 eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~   85 (121)
T d1nfdf1           6 ESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQM   85 (121)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeecee
Confidence            444567889999999999998543  34678873  111      00              012222222  23445899


Q ss_pred             ccCCCCCCeEEEEEEEe
Q psy12421        117 IDCKPEDSGEYKCVATN  133 (168)
Q Consensus       117 ~~~~~~d~G~Y~C~a~n  133 (168)
                      .+++.+|.+.|.|....
T Consensus        86 ~~L~~eDTAvYYCAr~~  102 (121)
T d1nfdf1          86 NRLRVDDTAIYYCTRAG  102 (121)
T ss_dssp             ESCCGGGCEECEEEEEE
T ss_pred             cccCCCcceEEEEeccC
Confidence            99999999999996543

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.26  E-value=0.011  Score=33.88  Aligned_cols=67  Identities=13%  Similarity=0.285  Sum_probs=39.0

Q ss_pred             cCCcEEEEEEEecc-CCC--eeEEEeCCEECCCCC-eEEEecCC----EEEEEEccCCCCCCeEEEEEEEeCCcc
Q psy12421         71 VRQTCKLLCCLSGK-PPP--TVKWYKGNRELSKRD-YSMSYSDG----VVSMEIIDCKPEDSGEYKCVATNKHGT  137 (168)
Q Consensus        71 ~g~~~~l~C~~~g~-p~p--~i~W~~~~~~~~~~~-~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~a~n~~g~  137 (168)
                      .++.+.|.|.+.|. |..  .+.|.+++....... ......++    .+.|.|..-.......|+|.+......
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~~   92 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSNP   92 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTSC
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCceeEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCCC
Confidence            46789999999994 543  467877765442110 01111222    124566555545566799999875433

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.23  E-value=0.0065  Score=34.79  Aligned_cols=63  Identities=13%  Similarity=0.230  Sum_probs=34.4

Q ss_pred             CCcEEEEEEEeccCCC--eeEEEeCCEECCC----CC-e--EEEecCC-EEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         72 RQTCKLLCCLSGKPPP--TVKWYKGNRELSK----RD-Y--SMSYSDG-VVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p--~i~W~~~~~~~~~----~~-~--~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      ...++|.|.+.|.-+.  .+.|++++..+..    .. .  .....++ ........+...+...|+|.+...
T Consensus        14 ~~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~   86 (98)
T d1u58a1          14 EGGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDGGLEHVYSCRVKGI   86 (98)
T ss_dssp             SSCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECTTCGGGEEEEEEEG
T ss_pred             CCcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECCCCCCEEEEEEEeC
Confidence            3478999999995444  6789998765421    00 0  0111222 111222233444556799998753

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.16  E-value=0.018  Score=31.97  Aligned_cols=60  Identities=7%  Similarity=0.129  Sum_probs=36.2

Q ss_pred             CcEEEEEEEeccCCC--eeEEEeCCEECCCCCeEEEecCC-EEEEEEccCCCCCCeEEEEEEEeC
Q psy12421         73 QTCKLLCCLSGKPPP--TVKWYKGNRELSKRDYSMSYSDG-VVSMEIIDCKPEDSGEYKCVATNK  134 (168)
Q Consensus        73 ~~~~l~C~~~g~p~p--~i~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~a~n~  134 (168)
                      +.+.|.|.+.|.-+.  .+.|.++|.............++ ...+.+..+...  ..|+|.+...
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~gtys~~s~~~~~~~--~~yTC~V~H~   76 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVISPSGKYNAVKLGKYEDS--NSVTCSVQHD   76 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEECTTSSEEEEEEEEETTT--TTCEEEEEET
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeeeccCCcEEEEEEEecCCC--CEEEEEEEEC
Confidence            456899999985433  67899999876543333333333 222333334433  4699998864

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0039  Score=36.02  Aligned_cols=67  Identities=13%  Similarity=0.337  Sum_probs=37.6

Q ss_pred             EecCCcEEEEEEEecc-CC---CeeEEEeCCEECCCCC--eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCC
Q psy12421         69 MQVRQTCKLLCCLSGK-PP---PTVKWYKGNRELSKRD--YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKH  135 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~-p~---p~i~W~~~~~~~~~~~--~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~  135 (168)
                      +..+..++|.|.+.|. |.   ..+.|++++.......  ......++.    +.|.+..-.......|+|.+....
T Consensus        13 l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~V~H~~   89 (103)
T d1fp5a1          13 LFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPH   89 (103)
T ss_dssp             HHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEEEEETTTEEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             HhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEcccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEECC
Confidence            4457788999999984 43   3567888876554321  111223331    123333222233567999998753

>d1i1ra1 b.1.2.1 (A:2-101) Cytokine receptor gp130 cytokine-binding domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Fibronectin type III
family: Fibronectin type III
domain: Cytokine receptor gp130 cytokine-binding domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.06  E-value=0.047  Score=31.01  Aligned_cols=69  Identities=14%  Similarity=0.217  Sum_probs=51.0

Q ss_pred             eecCCeEEecCCcEEEEEEEecc-------CCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         62 FLLRPRVMQVRQTCKLLCCLSGK-------PPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        62 ~~~~~~~~~~g~~~~l~C~~~g~-------p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      +.+.+.++..|+.++..|.....       ....+.|..++..++...+.... ....++.+.++....+-.+.|..
T Consensus         8 I~p~~Pvv~lGS~~TAsCtI~~~c~~~~~~~A~~I~Wkl~~~~~P~~qy~~ln-~T~~Svtl~~l~~~~a~L~C~~l   83 (100)
T d1i1ra1           8 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKEQYTIIN-RTASSVTFTDIASLNIQLTCNIL   83 (100)
T ss_dssp             EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGGGCEEEE-TTEEEEEECSCCCSEEEEEEEEE
T ss_pred             EecCCCeEECCCCEEEEEEECchhcCccCCCcceEEEEECCEECCchheEccC-CcEEEEEEccccCCcceeEEEEe
Confidence            46677888999999999998632       34689999999999876665544 44557889988877665555543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.03  E-value=0.0065  Score=35.85  Aligned_cols=67  Identities=22%  Similarity=0.403  Sum_probs=43.5

Q ss_pred             eEEecCCcEEEEEEEeccC--CCeeEEEeC--CEEC-------CC----------CCeEEEe--cCCEEEEEEccCCCCC
Q psy12421         67 RVMQVRQTCKLLCCLSGKP--PPTVKWYKG--NREL-------SK----------RDYSMSY--SDGVVSMEIIDCKPED  123 (168)
Q Consensus        67 ~~~~~g~~~~l~C~~~g~p--~p~i~W~~~--~~~~-------~~----------~~~~~~~--~~~~~~l~i~~~~~~d  123 (168)
                      ..+..|++++|.|.++|..  .-.+.|++.  |+.+       ..          .++.+..  ......|.+.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            4566799999999998854  335778873  2111       10          1222222  2234458889999999


Q ss_pred             CeEEEEEEEe
Q psy12421        124 SGEYKCVATN  133 (168)
Q Consensus       124 ~G~Y~C~a~n  133 (168)
                      .+.|.|....
T Consensus        90 TAvYyCAr~~   99 (116)
T d1fn4b1          90 TGTYYCTRDL   99 (116)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEeec
Confidence            9999996543

>d1hnfa1 b.1.1.1 (A:4-104) CD2, first domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.90  E-value=0.016  Score=32.67  Aligned_cols=39  Identities=21%  Similarity=0.423  Sum_probs=32.0

Q ss_pred             ecCCEEEEEEccCCCCCCeEEEEEEEeCCcce--EEEEEEEEe
Q psy12421        107 YSDGVVSMEIIDCKPEDSGEYKCVATNKHGTD--ETNCVVIVE  147 (168)
Q Consensus       107 ~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~v~  147 (168)
                      ..+|  +|.|..+...|+|.|...+.+.-|..  ..++.|.|.
T Consensus        60 ~~nG--tLkIK~L~~~d~GtYkv~vYd~~Gk~vlektf~LkI~  100 (101)
T d1hnfa1          60 FKNG--TLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQ  100 (101)
T ss_dssp             CTTS--CEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEE
T ss_pred             ccCC--cEEeeeeeecCCCcEEEEEEcCCCcEeeeeeEEEEee
Confidence            3556  79999999999999999999999874  556666664

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.77  E-value=0.0069  Score=34.90  Aligned_cols=67  Identities=19%  Similarity=0.284  Sum_probs=37.7

Q ss_pred             cCCcEEEEEEEeccC--CCeeEEEeCCEECCCCC-eEEEecCCE----EEEEEccCCCCCCeEEEEEEEeCCcce
Q psy12421         71 VRQTCKLLCCLSGKP--PPTVKWYKGNRELSKRD-YSMSYSDGV----VSMEIIDCKPEDSGEYKCVATNKHGTD  138 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p--~p~i~W~~~~~~~~~~~-~~~~~~~~~----~~l~i~~~~~~d~G~Y~C~a~n~~g~~  138 (168)
                      .+..+.|.|.+.|.-  ...+.|.+++....... ......++.    +.|.+..-.. ....|+|.+....+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~~t~~~~~~~~gtys~~S~L~v~~~~w-~~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSL-GTQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGG-GTCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCEEECCCeECCCCCEEEEEEEEECcccc-CCCeEEEEEEeCCCCE
Confidence            366799999999843  33689977764321100 011122331    2355554333 2356999999865544

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.60  E-value=0.0066  Score=34.99  Aligned_cols=65  Identities=14%  Similarity=0.231  Sum_probs=36.9

Q ss_pred             cCCcEEEEEEEecc-CC---CeeEEEeCCEECCCCC--eEEEecCCE-EEEEEccCCCC---CCeEEEEEEEeCC
Q psy12421         71 VRQTCKLLCCLSGK-PP---PTVKWYKGNRELSKRD--YSMSYSDGV-VSMEIIDCKPE---DSGEYKCVATNKH  135 (168)
Q Consensus        71 ~g~~~~l~C~~~g~-p~---p~i~W~~~~~~~~~~~--~~~~~~~~~-~~l~i~~~~~~---d~G~Y~C~a~n~~  135 (168)
                      .+.+..|.|.+.+. |.   ..+.|.++|..+....  ......++. .......+...   ..-.|+|.+....
T Consensus        15 ~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~~   89 (103)
T d1i1ca1          15 GGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSGA   89 (103)
T ss_dssp             SSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECSS
T ss_pred             cCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEECCcEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeCC
Confidence            46678999999883 43   4778999987654321  111223331 11222233332   3445999998753

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.58  E-value=0.032  Score=30.58  Aligned_cols=51  Identities=22%  Similarity=0.450  Sum_probs=33.3

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ...+.|.|..   ....+.|++++..+.....    ...  +|-+-+.-....|.|.|..
T Consensus        22 dGsV~L~Cn~---~~k~i~W~kdg~~i~~~~~----~~k--tlnLG~~~~DPRGiY~C~g   72 (86)
T d1jbja1          22 DGSVLLTCGL---TDKTIKWLKDGSIISPLNA----TKN--TWNLGNNAKDPRGTYQCQG   72 (86)
T ss_dssp             SCEEEEECSS---SCSCEEEEETTEECCCSSC----CSS--CCEEEETTSCCEEEEEEEE
T ss_pred             CCeEEEEeCC---CCcEEEEecCCceeccccc----ccc--eeecCCcccCCCcceEcCC
Confidence            4578999943   4468999999987653210    001  3445555666789999963

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.013  Score=32.17  Aligned_cols=61  Identities=16%  Similarity=0.322  Sum_probs=34.9

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEE-CCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEEeCCcceEEEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRE-LSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVATNKHGTDETNCVVIV  146 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~-~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  146 (168)
                      |..+.|.|...-  .-.|.|.+++.. +..       .+.  ++.+.--...|+|+|+|. .  .|..-....|.+
T Consensus        21 ~~~V~L~C~t~e--E~~I~W~kd~~se~~~-------~Gn--tltV~VkE~~~aGnYTCh-k--~g~~Lnht~lLi   82 (87)
T d3d85d1          21 GEMVVLTCDTPE--EDGITWTLDQSSEVLG-------SGK--TLTIQVKEFGDAGQYTCH-K--GGEVLSHSLLLL   82 (87)
T ss_dssp             CEEEEEECSSSC--CSSCEEEETTCCCCCE-------ESS--EEEEEECSGGGCEEEEEE-E--TTEEEEEEEEEE
T ss_pred             ccEEEEecCCCc--ccccEEeeCCcccccc-------CCC--EEEEEEEeccCCcceeEe-C--CCcEeeeEEEEE
Confidence            457889994322  236899998642 111       223  455554445799999996 2  265443333333

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.34  E-value=0.014  Score=33.58  Aligned_cols=68  Identities=16%  Similarity=0.328  Sum_probs=38.9

Q ss_pred             EecCCcEEEEEEEecc-CC---CeeEEEeCCEECCCCC--eEEEecCCE-EEEEEccCCCC---CCeEEEEEEEeCCc
Q psy12421         69 MQVRQTCKLLCCLSGK-PP---PTVKWYKGNRELSKRD--YSMSYSDGV-VSMEIIDCKPE---DSGEYKCVATNKHG  136 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~-p~---p~i~W~~~~~~~~~~~--~~~~~~~~~-~~l~i~~~~~~---d~G~Y~C~a~n~~g  136 (168)
                      +..+..+.|.|.+.|. |.   ..+.|.+++..+....  ......++. .......+..+   ..-.|+|.+.....
T Consensus        15 ~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          15 LMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             HCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             hccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            3457789999999884 43   4677999988764321  111222331 12222233332   34579999987543

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.33  E-value=0.065  Score=29.01  Aligned_cols=51  Identities=14%  Similarity=0.352  Sum_probs=32.6

Q ss_pred             CCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEE
Q psy12421         72 RQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVA  131 (168)
Q Consensus        72 g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a  131 (168)
                      ...+.|.|.   .....+.|++++..+...    .....  +|-+-+.-....|.|.|..
T Consensus        17 dg~V~L~Cn---~~~k~i~W~kdg~~i~~~----~~~~k--tlnLG~~~~DPRG~Y~C~~   67 (81)
T d1sy6a1          17 DGSVLLTCD---AEAKNITWFKDGKMIGFL----TEDKK--KWNLGSNAKDPRGMYQCKG   67 (81)
T ss_dssp             SSEEEEEEC---SCSSEEEEEETTEEEEEE----ESSCC--CEEEEEGGGCCEEEEEEES
T ss_pred             CCeEEEEeC---CCCcEEEEecCCeEeecc----cCCcc--eeecCCcccCCCcceEcCC
Confidence            457899994   345689999998754310    00111  3555555566789999964

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=94.13  E-value=0.002  Score=37.92  Aligned_cols=65  Identities=15%  Similarity=0.351  Sum_probs=35.6

Q ss_pred             cCCcEEEEEEEecc-C-CCeeEEEeCCEECCCCCeEEEecCC-EEEEEEccCCCCC---CeEEEEEEEeCC
Q psy12421         71 VRQTCKLLCCLSGK-P-PPTVKWYKGNRELSKRDYSMSYSDG-VVSMEIIDCKPED---SGEYKCVATNKH  135 (168)
Q Consensus        71 ~g~~~~l~C~~~g~-p-~p~i~W~~~~~~~~~~~~~~~~~~~-~~~l~i~~~~~~d---~G~Y~C~a~n~~  135 (168)
                      .+..+.|.|.+.|. | ...+.|.+++.............++ ........+...+   .-.|+|.+....
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYKNTPPVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTEEEEEEECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCcEEcccEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            35678899999984 3 3578998776321100011111222 1223334455544   456999998753

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.00036  Score=40.51  Aligned_cols=67  Identities=15%  Similarity=0.266  Sum_probs=37.1

Q ss_pred             EecCCcEEEEEEEecc--CC-CeeEEEeCCEECCCCCeEEEecCCE-EEEEEccCCCC---CCeEEEEEEEeCC
Q psy12421         69 MQVRQTCKLLCCLSGK--PP-PTVKWYKGNRELSKRDYSMSYSDGV-VSMEIIDCKPE---DSGEYKCVATNKH  135 (168)
Q Consensus        69 ~~~g~~~~l~C~~~g~--p~-p~i~W~~~~~~~~~~~~~~~~~~~~-~~l~i~~~~~~---d~G~Y~C~a~n~~  135 (168)
                      +..+..+.|.|.+.|.  |. ..+.|++++.............++. .......+...   ....|+|.+....
T Consensus        15 ~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~H~~   88 (101)
T d1ow0a1          15 LLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPE   88 (101)
T ss_dssp             HHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCCCCCSTTCCCEEEECTTTHHHHHHTCEEEEEECCSS
T ss_pred             HccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecceEECCCCCEEEEEEEEEcHHHcCCCCeEEEEEEeCC
Confidence            4457889999999985  32 4789998765321100011112221 11223334433   2568999988653

>d1xiwb_ b.1.1.4 (B:) CD3 delta chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 delta chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.88  E-value=0.059  Score=28.61  Aligned_cols=48  Identities=15%  Similarity=0.319  Sum_probs=28.7

Q ss_pred             cCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEEEE
Q psy12421         71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCVAT  132 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~a~  132 (168)
                      ..+.+.|.|.      ..+.|++++..+..      ....  .+-+-+.-....|.|.|.+.
T Consensus         8 ~e~~V~L~Cn------~si~W~k~~~~~~~------~~~k--~lnLG~~~~DPRG~Y~C~~~   55 (74)
T d1xiwb_           8 LEDRVFVNCN------TSITWVEGTVGTLL------SDIT--RLDLGKRILDPRGIYRCNGT   55 (74)
T ss_dssp             ETTEEEEECS------SCEEEEEECCCEEE------GGGT--EEEEEEGGGCCEEEEEEC--
T ss_pred             cCCeEEEEcc------CeeEEecCCccccc------CCcc--EeecCCcccCCCcceEeCCc
Confidence            3458899994      46999997532111      1112  34455555667899999654

>d1xmwa2 b.1.1.4 (A:113-178) CD3 epsilon chain ectodomain fragment {Sheep (Ovis aries) [TaxId: 9940]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Sheep (Ovis aries) [TaxId: 9940]

Probab=88.21  E-value=0.15  Score=26.40  Aligned_cols=46  Identities=15%  Similarity=0.325  Sum_probs=27.8

Q ss_pred             cCCcEEEEEEEeccCCCeeEEEeCCEECCCCCeEEEecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         71 VRQTCKLLCCLSGKPPPTVKWYKGNRELSKRDYSMSYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        71 ~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      ..+.+.|.|.      ..+.|++++........      .  ++-+-+.-....|.|.|-
T Consensus         7 ~edkV~L~Cn------~sI~w~k~~~~~~~~~~------k--tlnLG~~~~DPRGiY~C~   52 (66)
T d1xmwa2           7 AEDKVILKCN------SSITLLQGTAGQEVSDN------K--TLNLGKRIEDPRGMYQCG   52 (66)
T ss_dssp             ETTEEEEECS------SSCEEEEECCCCBSSSS------S--BBCCBCSTTCCEEEEECC
T ss_pred             cCceEEEEcc------CeEEEccCccccccCCC------c--EEeCCCcccCCCcceECC
Confidence            3457899994      35899998643322111      1  233444455668999993

>d2d9qb1 b.1.1.3 (B:3-96) Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Granulocyte colony-stimulating factor (GC-SF) receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.69  E-value=2.5  Score=23.27  Aligned_cols=68  Identities=9%  Similarity=0.106  Sum_probs=42.1

Q ss_pred             ecCCeEEecCCcEEEEEEEe-----ccCCCeeEEEeCCEECCCCCeEE-EecCCEEEEEEccCCCCCCeEEEEE
Q psy12421         63 LLRPRVMQVRQTCKLLCCLS-----GKPPPTVKWYKGNRELSKRDYSM-SYSDGVVSMEIIDCKPEDSGEYKCV  130 (168)
Q Consensus        63 ~~~~~~~~~g~~~~l~C~~~-----g~p~p~i~W~~~~~~~~~~~~~~-~~~~~~~~l~i~~~~~~d~G~Y~C~  130 (168)
                      .+...++..|+.++..|...     ..+.+.+.|.-++..++..+... ......++.++.++....+-.+.|.
T Consensus         5 ~~~spVV~lGsp~tAsC~I~e~C~~~~~a~~I~Wkl~~~~vP~~rq~~~~~~~~~SsVt~p~l~~~~a~LtC~v   78 (94)
T d2d9qb1           5 SVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGGRQQRLSDGTQESIITLPHLNHTQAFLSCSL   78 (94)
T ss_dssp             EESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTCEECCCSSSCCCEEEEESCCCSSEEEEEEEE
T ss_pred             eCCCceEeCCCCEEEEEEECccccCcCCcceEEEEECCEECCCcceeEEecCcEEEEEEecccccCcccEEEEE
Confidence            34456788999999999753     23456899988877665422111 1122345788888886655444443