Psyllid ID: psy12423

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------
Protein Sequence
LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDAKLSSMRKLGVQDPECPWTIEYDRSSPSGQSDQASSGHTAVMTDTIYNKMDKYNFGDRRSSLGYRSKSSGKSIVDTMSASER
Secondary Structure (PSIPRED)
ccEEEccccccccccHHccccccccEEEccccccccccHHHHcccccHHHHHHHcccccccccccccccccEEccccccccccccEEEcccccccccccccccccccEEEccccccccccccccccccEEEcccccccccccccccccEEccccccccccccccccccccEEEccccccccccHHccccccccEEEccccccccccccccccccccccEEEccccccccccccccccccccEEEccccccccccHHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHcccccccccccccccccccccHHHHccccEEEccccccccccccccccccEEEEEcccHHHHHHHccccEEEccccccccccccccccccccccccEEEEEcccccEEEEEcccccccHHHHHHHHHHHHHHHccccccEEEEEEEEcccccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccEEEccccccccccHHHHHHHcccEEccccccccHccHHHHHHHHHHHHHHHHcccccccccccHHHHHccccccccccccccEEEEcccccccccccHccccccEEEEccccccccccHHHHHHccEEEccccccHHHHHHcccccEEEcccccccccccHcccccccEEEcccccHHcccHHHHHcccccEEEccccccccccHHHHHcccccccEEEccccccccccHHHcccccccEEEccccccccccHHHHHHHHcccEEEccccccccccHHHHcccccEEEEccccccccccHHHHccccccEEEcccccHcHccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHcccccccccccEEEEEccccccHHHHHcccccccccccccHccccccccccccEcccccEEEEEccccccEEEEccccccHHHHHHHHHHHHHHHccccccEEEEEEEEEccHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccEEcccccEEEcccccccc
Coil and Loop (DISEMBL)
lqefrvdrndltefpgnqdsfprLKFLSAAQNRishlpvflrhpmsplnnvIEHGiaeereedfeqdedgiiverrepevkgeltsvnlrsnqlkgtiilgnygnlttldvsensieslDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAgnnklqslivsprparlqhLDISYNeleslpdwidtcPELETIFAShnritqlpsQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFlqsnsinilpqlflqnssklKVLNISKNCLKMLPSLQKGFYLLNisqlrlpgfcnsdaligifdsgdngdiASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLchlslhpvtHRYMLHIASVGEAKAILCRQagsltfthaptlsppvppqgscplsfpdphvtevmlheNDHFLILANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFqgsefdsrtRDAKLSSmrklgvqdpecpwtieydrsspsgqsdqassghtaVMTDTiynkmdkynfgdrrsslgyrskssgksIVDTMSASER
Flexible Loop (DISEMBL)
lqefrvdrndltefpgnqdsfprLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIaeereedfeqdedgiiverrepevkgeltsvnlrsnqlkgTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLvqsiprilleertvketasDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSEPVLAAKRIQDLAQsygsednlSVLVLRFqgsefdsrtrdaklssmrklgvqdpecPWTIEYDRsspsgqsdqassghTAVMTDTIYNKMDKYNFGdrrsslgyrskssgksivdtmsaser
Low Complexity Region (SEG)
LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAeereedfeqdedGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDAKLSSMRKLGVQDPECPWTIEYDRsspsgqsdqassgHTAVMTDTIYNKMDKYNFGDRRSSLGYRSKSSGKSIVDTMSASER
Disordered region (IsUnstruct)
***********************LKFLSAAQNRISHLPVFLRHPMSPLNNVIEH********************************VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHA******************DPHVTEVMLHENDHFLILANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ***************************WT*************************TIYN**********************************
Disordered Region (DISOPRED)
LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSR*************************************************************************************
Disordered Region (DISEMBL)
LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDAKLSSMRKLGVQDPECPWTIEYD***************TAVMTDTIYNKMDKYNFGDRRSSL********************
Disordered Region (DISPRO)
LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDAKL************************************AVMTDTIYNK********RR**L***S****************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDAKLSSMRKLGVQDPECPWTIEYDRSSPSGQSDQASSGHTAVMTDTIYNKMDKYNFGDRRSSLGYRSKSSGKSIVDTMSASER
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	567	2.2.26 [Sep-21-2011]
Q9VJ07	954	Protein phosphatase PHLPP	yes	N/A	0.359	0.213	0.376	2e-32
Q8BXA7	1320	PH domain leucine-rich re	yes	N/A	0.486	0.209	0.329	1e-26
Q6ZVD8	1323	PH domain leucine-rich re	yes	N/A	0.470	0.201	0.326	1e-25
Q8CHE4	1687	PH domain leucine-rich re	no	N/A	0.462	0.155	0.325	1e-25
Q9WTR8	1696	PH domain leucine-rich re	no	N/A	0.462	0.154	0.325	5e-25
O60346	1717	PH domain leucine-rich re	no	N/A	0.462	0.152	0.3	2e-23
Q09564	1036	Protein phosphatase PHLPP	yes	N/A	0.470	0.257	0.297	1e-21
Q96DD0	335	Leucine-rich repeat-conta	no	N/A	0.365	0.617	0.303	3e-12
Q7KRY7	1851	Protein lap4 OS=Drosophil	no	N/A	0.425	0.130	0.275	5e-12
Q9Y4C4	1052	Malignant fibrous histioc	no	N/A	0.324	0.174	0.318	5e-12

>sp|Q9VJ07|PHLPP_DROME Protein phosphatase PHLPP-like protein OS=Drosophila melanogaster GN=Phlpp PE=3 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 79/210 (37%), Positives = 129/210 (61%), Gaps = 6/210 (2%)

Query: 87  VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSS 146
           ++L+ +QL G+I++GNY  LT L+V EN +E LDL +L +LE++KCSRN+L  L++NG++
Sbjct: 51  LSLKGSQLGGSILIGNYNYLTQLEVCENEMEVLDLSSLAQLETLKCSRNKLMELIINGTN 110

Query: 147 LISVIAGNNKLQSLIVS---PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT 203
           L +++A +N L ++  +   P P +LQ +DIS+N    LP+W+  C  L  I ASHNR+ 
Sbjct: 111 LQTLVADHNYLHNISTTNTHPVPLKLQRIDISHNNFSELPNWVGACASLTAINASHNRLN 170

Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILP-QLFLQNSS 262
            +        + +L +L L++N L  L       +S++ L LQSN +  LP   F    +
Sbjct: 171 NVAVLLRNYRITELVSLDLAYNDLKQLDQFPEGFSSIRSLQLQSNELPSLPDNFFAVTHA 230

Query: 263 KLKVLNISKNCLKMLPSLQKGFY--LLNIS 290
           +L+ LN+S N L  LP  ++  +  L+N+S
Sbjct: 231 RLETLNVSCNKLSTLPRYEQNNHAALVNLS 260

Protein phosphatase that specifically mediates dephosphorylation of 'Ser-586' of Akt1, a protein that regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-586' of Akt1 triggers apoptosis and suppression of tumor growth.
Drosophila melanogaster (taxid: 7227)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q8BXA7|PHLP2_MOUSE PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Mus musculus GN=Phlpp2 PE=2 SV=3

 Score =  121 bits (304), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 97/294 (32%), Positives = 147/294 (50%), Gaps = 18/294 (6%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           LQ   +D N LT  P    +  +L  L  + N   H+P  L   ++ L+ V    +A  R
Sbjct: 344 LQTLSLDGNGLTALPDELGNLRQLTSLGISFNDFRHIPEVLEK-LTMLDKV---AMAGNR 399

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGN--LTTLDVSENSIES 118
            E        +    R  +VK     V+LR N LK  I     GN  +T +D+ +N +  
Sbjct: 400 LEVL-----NLGALTRMSQVK----HVDLRMNHLKTVITENMEGNKHITHMDLRDNQLTD 450

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           LDL +L  LE + C RNQL+ L L+G SL ++ A  N+L ++ V P P+ L  L++S N 
Sbjct: 451 LDLSSLCSLEQLHCERNQLRELTLSGFSLRTLYASWNRLTAVNVYPVPSLLTSLELSQNL 510

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           LE +PDW     +LE +  SHN +T++P +        L  L +  N +  LP+L+  I 
Sbjct: 511 LECVPDWACEAKKLEILDISHNLLTEVPMRILSSL--SLRKLMVGHNHIHVLPALVEHIP 568

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQL 292
            L+ L +Q N+++ LP      +  L+ LN S N L+ LPS   G   L++ QL
Sbjct: 569 -LEVLDIQHNTLSRLPDTLFSKALNLRYLNASANSLESLPSACAGEESLSVLQL 621

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and decreases cell proliferation. Also controls the phosphorylation of AKT3. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q6ZVD8|PHLP2_HUMAN PH domain leucine-rich repeat-containing protein phosphatase 2 OS=Homo sapiens GN=PHLPP2 PE=1 SV=3

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 93/285 (32%), Positives = 143/285 (50%), Gaps = 18/285 (6%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           LQ   +D N LT  P    +  +L  L  + N  S +P      ++ L+ V+  G     
Sbjct: 347 LQTLCLDGNFLTTLPEELGNLQQLSSLGISFNNFSQIPEVYEK-LTMLDRVVMAGNC--- 402

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGN--LTTLDVSENSIES 118
               E    G++   R   +K     V+LR N LK  +I    GN  +T +D+ +N +  
Sbjct: 403 ---LEVLNLGVL--NRMNHIK----HVDLRMNHLKTMVIENLEGNKHITHVDLRDNRLTD 453

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           LDL +L  LE + C RNQL+ L L+G SL ++ A +N+L ++ V P P+ L  LD+S N 
Sbjct: 454 LDLSSLCSLEQLHCGRNQLRELTLSGFSLRTLYASSNRLTAVNVYPVPSLLTFLDLSRNL 513

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           LE +PDW     ++E +  S+N +T++P +        L  L L  N + +LP+L+  I 
Sbjct: 514 LECVPDWACEAKKIEVLDVSYNLLTEVPVRILSSL--SLRKLMLGHNHVQNLPTLVEHIP 571

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG 283
            L+ L LQ N++  LP      +  L+ LN S N L+ LPS   G
Sbjct: 572 -LEVLDLQHNALTRLPDTLFSKALNLRYLNASANSLESLPSACTG 615

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and decreases cell proliferation. Also controls the phosphorylation of AKT3. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8CHE4|PHLP1_MOUSE PH domain leucine-rich repeat-containing protein phosphatase 1 OS=Mus musculus GN=Phlpp1 PE=2 SV=2

 Score =  118 bits (296), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 18/280 (6%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           LQ F +D N L   P   +S  +L +L  + N  + +P  L      L  V +  +A   
Sbjct: 695 LQTFLLDGNFLQSLPAELESMHQLSYLGLSFNEFTDIPEVLEK----LTAVDKLCMAGNC 750

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII--LGNYGNLTTLDVSENSIES 118
            E        +   RR P +K     V+LR N L+  +   +    ++T LD+ +N +  
Sbjct: 751 VETLR-----LQALRRMPHIK----HVDLRLNILRKLMADEVDFVQHVTQLDLRDNKLGD 801

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           LD    N +E + C RNQL TL + G  L ++ A +N+L  L V P P  L ++D+S N 
Sbjct: 802 LDAMIFNNIEVLHCERNQLVTLNVCGYFLKALYASSNELAQLDVYPVPNYLSYMDVSRNC 861

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           LES+P+W+    +LE +   HN+I +LP++ FC     L  L    NRL  LP  + +  
Sbjct: 862 LESVPEWVCESRKLEVLDIGHNQICELPARLFCN--SSLRKLLAGHNRLARLPERLER-T 918

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           S++ L +Q N I  LP   L  +  L+ LN S N L+ LP
Sbjct: 919 SVEVLDVQHNQITELPPNLLMKADSLRFLNASANKLETLP 958

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB, and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and suppression of tumor growth. Controls the phosphorylation of AKT2 and AKT3 more efficiently than that of AKT1. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. May act as a negative regulator of K-Ras signaling in membrane rafts.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9WTR8|PHLP1_RAT PH domain leucine-rich repeat protein phosphatase 1 OS=Rattus norvegicus GN=Phlpp1 PE=1 SV=1

 Score =  116 bits (291), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/280 (32%), Positives = 138/280 (49%), Gaps = 18/280 (6%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           LQ F +D N L   P   ++  +L +L  + N  + +P  L      L  V +  +A   
Sbjct: 702 LQTFLLDGNFLQSLPAELENMHQLSYLGLSFNEFTDIPEVLEK----LTAVDKLCMAGNC 757

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII--LGNYGNLTTLDVSENSIES 118
            E        +   RR P +K     V+LR N L+  I   +    ++T LD+ +N +  
Sbjct: 758 METLR-----LQALRRMPHIK----HVDLRLNILRKLITDEVDFLQHVTQLDLRDNKLGD 808

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           LD    N +E + C RNQL TL + G  L ++ A +N+L  L V P P  L ++D+S N 
Sbjct: 809 LDAMIFNNIEVLHCERNQLVTLNICGYFLKALYASSNELVQLDVYPVPNYLSYMDVSRNC 868

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           LES+P+W+    +LE +   HN+I +LP++ FC     L  L    NRL  LP  + +  
Sbjct: 869 LESVPEWVCESRKLEVLDIGHNQICELPARLFCNS--SLRKLLAGHNRLARLPERLER-T 925

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           S++ L +Q N I  LP   L  +  L+ LN S N L+ LP
Sbjct: 926 SVEVLDVQHNQIIELPPNLLMKADSLRFLNASANKLETLP 965

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and suppression of tumor growth. Controls the phosphorylation of AKT2 and AKT3 more efficiently than that of AKT1. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor (By similarity). May act as a negative regulator of K-Ras signaling in membrane rafts.

Rattus norvegicus (taxid: 10116)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|O60346|PHLP1_HUMAN PH domain leucine-rich repeat-containing protein phosphatase 1 OS=Homo sapiens GN=PHLPP1 PE=1 SV=3

 Score =  110 bits (276), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/280 (30%), Positives = 139/280 (49%), Gaps = 18/280 (6%)

Query: 1    LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
            LQ F +D N L   P   ++  +L +L  + N  + +P  L   ++ ++ +   G   E 
Sbjct: 739  LQTFLLDGNFLQSLPAELENMKQLSYLGLSFNEFTDIPEVLEK-LTAVDKLCMSGNCVET 797

Query: 61   EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII--LGNYGNLTTLDVSENSIES 118
                      +   R+ P +K     V+LR N ++  I   +    ++T LD+ +N +  
Sbjct: 798  LR--------LQALRKMPHIK----HVDLRLNVIRKLIADEVDFLQHVTQLDLRDNKLGD 845

Query: 119  LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
            LD    N +E + C RNQL TL + G  L ++ A +N+L  L V P P  L ++D+S N 
Sbjct: 846  LDAMIFNNIEVLHCERNQLVTLDICGYFLKALYASSNELVQLDVYPVPNYLSYMDVSRNR 905

Query: 179  LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
            LE++P+W+    +LE +   HN+I +LP++ FC     L  L    N+L  LP  + +  
Sbjct: 906  LENVPEWVCESRKLEVLDIGHNQICELPARLFCNS--SLRKLLAGHNQLARLPERLER-T 962

Query: 239  SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            S++ L +Q N +  LP   L  +  L+ LN S N L+ LP
Sbjct: 963  SVEVLDVQHNQLLELPPNLLMKADSLRFLNASANKLESLP 1002

Protein phosphatase that mediates dephosphorylation of 'Ser-473' of AKT1, 'Ser-660' of PRKCB isoform beta-II and 'Ser-657' of PRKCA. AKT1 regulates the balance between cell survival and apoptosis through a cascade that primarily alters the function of transcription factors that regulate pro- and antiapoptotic genes. Dephosphorylation of 'Ser-473' of AKT1 triggers apoptosis and suppression of tumor growth. Controls the phosphorylation of AKT2 and AKT3 more efficiently than that of AKT1. Dephosphorylation of PRKCA and PRKCB leads to their destabilization and degradation. Inhibits cancer cell proliferation and may act as a tumor suppressor. May act as a negative regulator of K-Ras signaling in membrane rafts.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q09564|PHLPP_CAEEL Protein phosphatase PHLPP-like protein OS=Caenorhabditis elegans GN=F43C1.1 PE=3 SV=2

 Score =  105 bits (261), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/292 (29%), Positives = 146/292 (50%), Gaps = 25/292 (8%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L++  +  N ++  P    +  RL++L+ + N++  LP      +S L N+    I+  +
Sbjct: 222 LRQLNLSSNYISSVPSECSNMRRLQYLNLSNNQLDTLP----DSISELQNLQSLDISFNQ 277

Query: 61  EEDFEQ-------------DEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLT 107
              F Q                G  +E+ +   + ++  ++LR N L  +  L +  N+T
Sbjct: 278 ---FSQIPPCLFHLTLEMWRLAGNNIEKIDRVGEMQIQKIDLRRNVLDTSFRL-DIENIT 333

Query: 108 TLDVSENS-IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRP 166
            LD+ +NS I ++ L  L  L+ I C R QL +L L+G SL  V A +N L SL+V P P
Sbjct: 334 HLDLRDNSMISTVHLTNLRFLKVIHCERLQLSSLHLSGESLTHVYADHNLLDSLVVMPLP 393

Query: 167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
             LQ L +S+N   +LPDWI  CP L  + A++N +  LP + F  +   L ++    N 
Sbjct: 394 QNLQTLSLSFNHFRNLPDWISDCPNLTFLRANNNSLVALPERIFYSQ--SLRSIFAFINE 451

Query: 227 LTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           +  +P    +   L+ L L  N ++ LP+ F     +L+ LNIS N +++LP
Sbjct: 452 IEHIPDFGEE-NCLETLILYKNKLSSLPKHFFSILPRLRQLNISSNFIELLP 502

Probable protein phosphatase.

Caenorhabditis elegans (taxid: 6239)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q96DD0|LRC39_HUMAN Leucine-rich repeat-containing protein 39 OS=Homo sapiens GN=LRRC39 PE=2 SV=1

 Score = 73.9 bits (180), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/234 (30%), Positives = 117/234 (50%), Gaps = 27/234 (11%)

Query: 68  EDGIIVERREPEVKGELTSVNLRSNQLK-------GTI----ILGNYGNLTTLDVSENSI 116
           EDG ++ + E E    L S  L+ NQL+       G +     +G + NL  LD+S N+I
Sbjct: 59  EDGRVILKIEKEEWKTLPSSLLKLNQLQEWQLHRTGLLKIPEFIGRFQNLIVLDLSRNTI 118

Query: 117 ESL--DLGALNRLESIKCSRNQLKTL---VLNGSSLISV-IAGNNKLQSLIVSPRP---- 166
             +   +G L RL+ +  S N++KT+   + N +SL  + +A N  +  L   P+     
Sbjct: 119 SEIPPGIGLLTRLQELILSYNKIKTVPKELSNCASLEKLELAVNRDICDL---PQELSNL 175

Query: 167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
            +L HLD+S N+  ++P  +   P LE +    N++ QLP       +  LHTL L  N 
Sbjct: 176 LKLTHLDLSMNDFTTIPLAVLNMPALEWLDMGSNKLEQLPDTI--ERMQNLHTLWLQRNE 233

Query: 227 LTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL 280
           +T LP  I  + +L  L L +N +  +P + ++  + L+ +N   N LK+  SL
Sbjct: 234 ITCLPQTISNMKNLGTLVLSNNKLQDIP-VCMEEMANLRFVNFRDNPLKLKVSL 286

Homo sapiens (taxid: 9606)

>sp|Q7KRY7|LAP4_DROME Protein lap4 OS=Drosophila melanogaster GN=scrib PE=1 SV=1

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 77/280 (27%), Positives = 124/280 (44%), Gaps = 39/280 (13%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+E  +D N + + P N     RL+ L  + N I  LP  +++      N++E  ++   
Sbjct: 39  LEELFLDANHIRDLPKNFFRLHRLRKLGLSDNEIGRLPPDIQN----FENLVELDVSRND 94

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQL-KGTIILGNYGNLTTLDVSENSIESL 119
             D   D   +            L   +  SN + K         NLT L +++ S+ +L
Sbjct: 95  IPDIPDDIKHL----------QSLQVADFSSNPIPKLPSGFSQLKNLTVLGLNDMSLTTL 144

Query: 120 --DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
             D G+L +LES++   N LK L    S L                    +L+ LD+  N
Sbjct: 145 PADFGSLTQLESLELRENLLKHLPETISQL-------------------TKLKRLDLGDN 185

Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
           E+E LP ++   P L  ++  HN++ +LP +     L KL  L +S NRL  LP+ I  +
Sbjct: 186 EIEDLPPYLGYLPGLHELWLDHNQLQRLPPELGL--LTKLTYLDVSENRLEELPNEISGL 243

Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
            SL  L L  N +  LP   +   S+L +L + +N L+ L
Sbjct: 244 VSLTDLDLAQNLLEALPD-GIAKLSRLTILKLDQNRLQRL 282

Required for polarization of the embryonic, imaginal disk and follicular epithelia. Specifically restricts apical membrane determinants to the apical cell surface; acts to exclude crb from the basolateral domain and define adherens junction position. Regulates cellular growth and differentiation; acts as a tumor suppressor. Essential for odor guided behavior.

Drosophila melanogaster (taxid: 7227)

>sp|Q9Y4C4|MFHA1_HUMAN Malignant fibrous histiocytoma-amplified sequence 1 OS=Homo sapiens GN=MFHAS1 PE=1 SV=2

 Score = 73.2 bits (178), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 70/220 (31%), Positives = 101/220 (45%), Gaps = 36/220 (16%)

Query: 82  GELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSR 134
           G L  + LR N+          LG++  LT LDVS N + +L    + AL  L  +  S 
Sbjct: 87  GSLRVLVLRRNRFARLPPAVAELGHH--LTELDVSHNRLTALGAEVVSALRELRKLNLSH 144

Query: 135 NQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELET 194
           NQL  L     +L                   A L+ LD+S+N L  LPD +     L T
Sbjct: 145 NQLPALPAQLGAL-------------------AHLEELDVSFNRLAHLPDSLSCLSRLRT 185

Query: 195 IFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILP 254
           +   HN++T  P Q    +L  L  L +S NRL  LP  I  + +LK L+L    +  LP
Sbjct: 186 LDVDHNQLTAFPRQLL--QLVALEELDVSSNRLRGLPEDISALRALKILWLSGAELGTLP 243

Query: 255 QLFLQNSSKLKVLNISKNCLKMLPS----LQKGFYLLNIS 290
             F + +S L+ L +  N L+ LP+    LQ+   +LN+S
Sbjct: 244 AGFCELAS-LESLMLDNNGLQALPAQFSCLQR-LKMLNLS 281

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	567
357611534	1138	putative adenylate cyclase [Danaus plexi	0.890	0.443	0.318	8e-65
170055945	1002	adenylate cyclase [Culex quinquefasciatu	0.474	0.268	0.417	4e-52
340729082	1784	PREDICTED: PH domain leucine-rich repeat	0.509	0.161	0.409	7e-52
403182848	1469	AAEL007111-PA [Aedes aegypti]	0.477	0.184	0.421	9e-52
345483572	1444	PREDICTED: protein phosphatase PHLPP-lik	0.451	0.177	0.445	1e-51
189237527	1034	PREDICTED: similar to adenylate cyclase	0.455	0.249	0.444	1e-51
350401465	1824	PREDICTED: PH domain leucine-rich repeat	0.509	0.158	0.409	1e-51
383864524	1740	PREDICTED: PH domain leucine-rich repeat	0.472	0.154	0.431	3e-51
307200228	1111	Protein phosphatase PHLPP-like protein [	0.463	0.236	0.431	2e-50
380013691	1109	PREDICTED: protein phosphatase PHLPP-lik	0.462	0.236	0.416	2e-50

>gi|357611534|gb|EHJ67531.1| putative adenylate cyclase [Danaus plexippus]

 Score =  254 bits (649), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 198/621 (31%), Positives = 300/621 (48%), Gaps = 116/621 (18%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHP-----MSPLNNVIEHG 55
           L    V  N + E P       +L+ ++ + N I  L   LR P     ++  N + + G
Sbjct: 341 LTHLDVSDNKIIELPKEISHLTQLEEINVSNNEIKSLDCLLRLPRLRTVVAARNLITQFG 400

Query: 56  IAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENS 115
           + +  +  F        +E  + E +  LT+V+LR N+LKG+IILGNY +L TLDVS+NS
Sbjct: 401 VNDTSQMGF--------LEENKSEYRAPLTNVDLRYNKLKGSIILGNYEHLVTLDVSQNS 452

Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
           IE L L +L  L  +  + N ++ L L+G+SL  + A  N +++L     P  L  ++++
Sbjct: 453 IEVLVLSSLRGLRELYAAHNSIQHLALHGASLRVLHAPYNNMENLTTMVPPINLVEMNLT 512

Query: 176 YNELESLPDWIDTCPELETIFA-------SHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
           YN+L SLP WI  C +L  +FA       S N +++LP      ++  +  ++   NRL 
Sbjct: 513 YNKLSSLPQWISGCSDLTKLFAKIEELVLSGNSLSKLPDNL--PQMNNIKIVRAHSNRLR 570

Query: 229 SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC-LKMLPSL------- 280
           S+P +    AS+K L    N ++ +  L L    +LK L+IS N  L+M PS        
Sbjct: 571 SVP-MFACSASVKILDFAHNELDSI-DLRLLAPKQLKFLDISCNKKLQMNPSQFNAYKCQ 628

Query: 281 -----------------QK---------------GF-------YLLNISQLRLPGFCNSD 301
                            QK               GF        LL+ +Q+RLP FCN +
Sbjct: 629 RPLSLVDVTGQHGNSLSQKNNFHEELSGGTPWVTGFSECPNKKLLLSCAQIRLPSFCNKE 688

Query: 302 ALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSL 361
            L  I D   + ++   L   +P +LLEE+++KET ++YMKY +L AHRE+K        
Sbjct: 689 GLFAIIDGETDIEVPRILQSCLPGLLLEEKSIKETVNEYMKYVILAAHRELKQKGQTKGA 748

Query: 362 SATLCHLSLHPVT----------HRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVP 411
              +CHLS  P++           RY + +A+VG  KA+L R+ G L        +  + 
Sbjct: 749 CLVMCHLS--PISTPDNSFGQSIRRYNIRLANVGNTKAVLSRRNGPLCL--GIDDNKRLG 804

Query: 412 PQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSE----------------PVLAAKRIQ 455
                P++ PDP + + ++ E+D FLIL N    E                PVLAAKR+Q
Sbjct: 805 YSSRYPVNVPDPDIIQTVIKEDDEFLILGNAKFWESVTVDTAISEVRAERNPVLAAKRLQ 864

Query: 456 DLAQSYGSEDNLSVLVLRFQG--SEFDSRTRDAKLSSMRKLGVQDPEC------------ 501
           DLAQSYG ED +SV+++RF    S+ D   R+ + +      V +P+C            
Sbjct: 865 DLAQSYGIEDCISVVIVRFDTVRSDVDLLMRELRHTINTNKPVCNPDCCCSRLEPCCHSI 924

Query: 502 -PWTIEYDRSSPSGQSDQASS 521
            P     DRSSPSGQSD+ SS
Sbjct: 925 SPPKSNSDRSSPSGQSDRPSS 945

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170055945|ref|XP_001863809.1| adenylate cyclase [Culex quinquefasciatus] gi|167875777|gb|EDS39160.1| adenylate cyclase [Culex quinquefasciatus]

 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 117/280 (41%), Positives = 168/280 (60%), Gaps = 11/280 (3%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE- 59
           L+E  +++N+L + P    S   L+ L+ A N++  LP F+ + M P+     H      
Sbjct: 6   LEELVLEKNELQDLPECLQSLSNLRSLNVAYNQLEQLPAFMVNTMRPVGLFQRHDSVRNG 65

Query: 60  -REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
            R +  E+D+D         +    LT VNLR NQLKG+IILGNYG LT LDVSENSIE 
Sbjct: 66  LRRDSLEKDDD---------KSGLPLTKVNLRGNQLKGSIILGNYGLLTQLDVSENSIEI 116

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           +DL AL++LE+I+C RN LK L LNG +L S+IAGNN L  ++V   P  L+H+DIS+N 
Sbjct: 117 MDLSALDKLETIQCCRNNLKELTLNGRNLHSLIAGNNNLTKIMVRATPTNLKHIDISFNN 176

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           L  LPDW+  C +L T++A++N++  +       E   + TL L++N L S P ++++  
Sbjct: 177 LRELPDWLVGCHQLRTLYANNNQLHVISEHLLNNEHATILTLHLAYNNLASFPPMVKRKL 236

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            L+ L+LQ N I  LP+ F     +L +LNIS N L  LP
Sbjct: 237 PLQKLYLQCNLIEDLPENFFIACERLTILNISSNKLMTLP 276

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340729082|ref|XP_003402837.1| PREDICTED: PH domain leucine-rich repeat-containing protein phosphatase 2-like [Bombus terrestris]

 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 177/308 (57%), Gaps = 19/308 (6%)

Query: 1    LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
            L+E  +DRN + E P        L+ +S A N +S LP F       L +V+      + 
Sbjct: 806  LKELILDRNGIRELPHELVELKNLRNVSLAGNCLSSLPSFFNMRALALTDVLSKADHSKD 865

Query: 61   EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
             +D + +++              L  VNLR+NQLKG IILGNYGNLT LDVSENSIE LD
Sbjct: 866  SKDEKHNQNN-------------LYKVNLRNNQLKGNIILGNYGNLTHLDVSENSIEKLD 912

Query: 121  LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
            + AL  L S++C+RN L  L + G +++S+IAGNNKL+ L + P P  L+HLD+SYN L+
Sbjct: 913  ISALQELRSVRCARNILTELTVCGRNIVSLIAGNNKLKKLTIEPVPVNLEHLDVSYNNLD 972

Query: 181  SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
            +LP+WI   P L  +FASHN +T LP +   +   +L  L L  NRL +LP   R+  ++
Sbjct: 973  ALPEWIPDLPLLRALFASHNALTALPDRLLTQP-SRLEVLHLPHNRLQALPP-PRKPLNI 1030

Query: 241  KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG----FYLLNISQLRLPG 296
             +L LQ N++  LP  F  N+ K+KVLN+S N L  LP L +G        N+ +L L  
Sbjct: 1031 VHLTLQDNALTALPTSFFINTEKMKVLNLSNNRLSELPHLGEGNKNRHTNHNLEKLYLTA 1090

Query: 297  FCNSDALI 304
             C +D  +
Sbjct: 1091 NCLTDTAL 1098

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|403182848|gb|EAT41218.2| AAEL007111-PA [Aedes aegypti]

 Score =  211 bits (537), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 118/280 (42%), Positives = 170/280 (60%), Gaps = 9/280 (3%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHP--MSPLNNVIEHGIAE 58
           L+E  +++N+L E P        LK L+ A N++ HLP F+ +   M P+      G+ +
Sbjct: 471 LEELILEKNELQELPNCLQKLINLKTLNVAYNQLDHLPAFMVNSSSMRPV------GLFQ 524

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
            R +          + + E +++  LT VNLR NQLKG+IILGNYG LT LDVSENSIE 
Sbjct: 525 -RNDSLRNGHHNDPLYKEEEKIELPLTKVNLRGNQLKGSIILGNYGLLTQLDVSENSIEI 583

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           +DL AL++LE+I+C RN LK L LNG  L S+IAGNN L  ++V   P  L+H+DIS+N 
Sbjct: 584 MDLSALDKLETIQCCRNNLKELTLNGRHLHSLIAGNNNLTKIMVRATPTNLKHIDISFNC 643

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           L  LPDW+  C +L T++A++N++  +       E   + TL L++N LTS P ++++  
Sbjct: 644 LRELPDWLVGCHQLRTLYANNNQLHVISEHLLNNEHATILTLHLAYNHLTSFPPMVKRKL 703

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            L+ L+LQ N I  LP+ F     +L +LNIS N L  LP
Sbjct: 704 PLQKLYLQCNRIEDLPENFFIACERLTILNISSNKLMTLP 743

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345483572|ref|XP_001602236.2| PREDICTED: protein phosphatase PHLPP-like protein-like [Nasonia vitripennis]

 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/283 (44%), Positives = 165/283 (58%), Gaps = 27/283 (9%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRH----PMSPLNNVIEHGI 56
           L+E  +DRND+ E P       +L+ +S A N I  LP FL       +S  +N+ ++G 
Sbjct: 455 LRELILDRNDIKELPDEIGELRQLQHISLAGNLIEILPGFLLEMRTLGLSERSNLQDNGA 514

Query: 57  AEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSI 116
           +                          L  VNLR+NQLKG IILGNYG LT LD+SENSI
Sbjct: 515 SAG---------------------SSSLYKVNLRNNQLKGNIILGNYGRLTHLDLSENSI 553

Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176
           E LDL AL  L S++C+RN+L  L L G SL+S+IAGNNKL+ L + P P  L+HLD+SY
Sbjct: 554 EKLDLSALQELRSVRCARNELTELTLCGRSLVSLIAGNNKLKRLSIVPAPVNLEHLDVSY 613

Query: 177 NELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG-KLHTLQLSFNRLTSLPSLIR 235
           NEL+SLP+W    P L  +FASHN +T LP +   +    +L  L L  NRL +LP   R
Sbjct: 614 NELDSLPEWTPDLPVLRALFASHNALTGLPERLLSQPAASRLEVLHLPHNRLQALPPPRR 673

Query: 236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           Q+  L +L LQ N++  LP  F  N+ K+KVLN+S N L  LP
Sbjct: 674 QLG-LVHLTLQGNALTALPVNFFANTLKMKVLNLSNNRLSELP 715

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237527|ref|XP_973398.2| PREDICTED: similar to adenylate cyclase [Tribolium castaneum]

 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 124/279 (44%), Positives = 179/279 (64%), Gaps = 21/279 (7%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L E  +D+N L+  P        L+ L  A+NR++ LP     P  P          E R
Sbjct: 132 LSELVLDQNLLSVLPTTLWDLKFLQTLKVARNRLA-LP-----PDKP---------GEMR 176

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                + E      + E   K  LT++NLRSN+LKG IILGNYGNLT LDVSENSIE+LD
Sbjct: 177 ALILAESE-----LKPENHNKNGLTTLNLRSNRLKGNIILGNYGNLTELDVSENSIENLD 231

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
           L A+ +L+ ++CSRN +  L L+G +L S+IAGNN+L++L ++  P  L+HLD+ YNELE
Sbjct: 232 LSAVEQLQILQCSRNSITHLTLHGKNLTSIIAGNNRLRNLTLAHPPLNLRHLDVCYNELE 291

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
           +LPDW+  C EL ++FAS+N +T LP   FC E+  LHTLQ+++N+L  LP++ R++  +
Sbjct: 292 TLPDWLSGCSELRSLFASNNLLTSLPDHLFCNEMPFLHTLQIAYNQLQYLPTIQRRLP-I 350

Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           + LFLQ+NS++ LP+ F +    ++VLN+S N L  LP+
Sbjct: 351 QELFLQNNSLSSLPENFFRFVHPIRVLNLSNNRLCDLPT 389

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350401465|ref|XP_003486161.1| PREDICTED: PH domain leucine-rich repeat-containing protein phosphatase 2-like [Bombus impatiens]

 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 126/308 (40%), Positives = 177/308 (57%), Gaps = 19/308 (6%)

Query: 1    LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
            L+E  +DRN + E P        L+ +S A N +S LP F       L +V+      + 
Sbjct: 846  LKELILDRNGIRELPHELVELKNLRNISLAGNCLSSLPSFFNMRALALTDVLSKADHSKD 905

Query: 61   EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
             +D + +++              L  VNLR+NQLKG IILGNYGNLT LDVSENSIE LD
Sbjct: 906  CKDEKHNQNN-------------LYKVNLRNNQLKGNIILGNYGNLTHLDVSENSIEKLD 952

Query: 121  LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
            + AL  L S++C+RN L  L + G +++S+IAGNNKL+ L + P P  L+HLD+SYN L+
Sbjct: 953  ISALQELRSVRCARNILTELTVCGRNIVSLIAGNNKLKKLTIEPVPVNLEHLDVSYNNLD 1012

Query: 181  SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
            +LP+WI   P L  +FASHN +T LP +   +   +L  L L  NRL +LP   R+  ++
Sbjct: 1013 ALPEWIPDLPLLRALFASHNALTALPDRLLTQP-SRLEVLHLPHNRLQALPP-PRKPLNI 1070

Query: 241  KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG----FYLLNISQLRLPG 296
             +L LQ N++  LP  F  N+ K+KVLN+S N L  LP L +G        N+ +L L  
Sbjct: 1071 VHLTLQDNALTALPTSFFTNTEKMKVLNLSNNRLSELPHLGEGNKSRHTNHNLEKLYLTA 1130

Query: 297  FCNSDALI 304
             C +D  +
Sbjct: 1131 NCLTDTAL 1138

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383864524|ref|XP_003707728.1| PREDICTED: PH domain leucine-rich repeat-containing protein phosphatase 1-like [Megachile rotundata]

 Score =  209 bits (532), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 122/283 (43%), Positives = 165/283 (58%), Gaps = 15/283 (5%)

Query: 1    LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
            L+E  +DRN + E P        L+ +S A N ++ LP F       L  V+      E 
Sbjct: 762  LRELILDRNGIKELPHELGELKNLRNISLAGNCLNSLPSFFNMRTLALTEVLSKS---EH 818

Query: 61   EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
             + +          R E   +  L  VNLR+NQLKG IILGNYGNLT LDVSENSIE LD
Sbjct: 819  SKTY----------RDEKNNQNNLYKVNLRNNQLKGNIILGNYGNLTHLDVSENSIEKLD 868

Query: 121  LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
            + AL  L S++C+RN L  L + G +L+S+IAGNNKL+ L + P P  L+HLD+SYN L+
Sbjct: 869  ISALQELRSVRCARNVLTELTVCGRNLVSLIAGNNKLKKLTIEPVPVNLEHLDVSYNNLD 928

Query: 181  SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
            +LP+W    P L  +FASHN +T LP +    +  +L  L L  NRL +LP   R+  ++
Sbjct: 929  ALPEWTPDLPVLRALFASHNALTALPDRLLT-QPSRLEVLHLPHNRLQALPP-PRKPLNI 986

Query: 241  KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG 283
             +L LQ N++  LP  F  N+ K+KVLN+S N L  LP L +G
Sbjct: 987  VHLTLQDNALTALPTSFFVNTEKMKVLNLSNNRLSELPPLGEG 1029

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200228|gb|EFN80522.1| Protein phosphatase PHLPP-like protein [Harpegnathos saltator]

 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/278 (43%), Positives = 160/278 (57%), Gaps = 15/278 (5%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+E  +DRN + + P        L+ +S   N +S  P F       L  V+  G   + 
Sbjct: 132 LKELILDRNGIKDLPEEVTRLRNLRNISLVGNLLSIAPSFFNMRALALTEVLSKGDHGKS 191

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
            +D             E      L  +NLR+NQLKG IILGNYGNLT LDVSENSIE LD
Sbjct: 192 YKD-------------EKASHSNLHKINLRNNQLKGNIILGNYGNLTHLDVSENSIEKLD 238

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
           + AL  L S++C+RN L  L L G +L+S+IAGNNKL+ LIV P P  L+HLD+SYN L+
Sbjct: 239 ISALQELRSVRCARNHLTELTLCGRNLVSLIAGNNKLKKLIVEPVPINLEHLDVSYNNLD 298

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
           +LP+W+   P L  +FASHN +T LP +   +   +L  L L  NRL +LP   R + ++
Sbjct: 299 ALPEWMTELPALRVLFASHNTLTALPDRLLSQP-SRLEVLHLPHNRLQALPPPRRPL-NI 356

Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            +L LQ N +  LP  F  N+ K+KVLN+S N L  LP
Sbjct: 357 VHLTLQGNMLTTLPTSFFANTEKMKVLNLSNNRLSELP 394

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013691|ref|XP_003690883.1| PREDICTED: protein phosphatase PHLPP-like protein-like [Apis florea]

 Score =  206 bits (525), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 120/288 (41%), Positives = 166/288 (57%), Gaps = 26/288 (9%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVI-----EHG 55
           L+E  +DRN + E P        L+ +S A N ++ LP F       L +V+       G
Sbjct: 132 LKELILDRNGIKELPYELIELKNLRNISLAGNCLTSLPSFFNMRALALTDVLSKTDHNKG 191

Query: 56  IAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENS 115
             +E+ ++                    L  VNLR+NQLKG IILGNYGNLT LDVSENS
Sbjct: 192 CKDEKNQN-------------------NLYKVNLRNNQLKGNIILGNYGNLTHLDVSENS 232

Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
           IE LD+ AL  L S++C+RN L  L + G +++S+IAGNNKL+ L + P P  L+HLD+S
Sbjct: 233 IEKLDISALQELRSVRCARNILTELTVCGRNIVSLIAGNNKLKKLTIEPVPVNLEHLDVS 292

Query: 176 YNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
           YN L++LP+WI   P L  +FASHN +T LP +   +   +L  L L  NRL +LP   R
Sbjct: 293 YNNLDALPEWISDLPLLRALFASHNALTALPDRLLTQP-SRLEVLHLPHNRLQALPP-PR 350

Query: 236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG 283
           +  ++ +L LQ N++  LP  F  N+ K+KVLN+S N L  LP   +G
Sbjct: 351 KPLNIVHLTLQDNALTALPTTFFINTEKMKVLNLSNNRLSELPHFGEG 398

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	567
UNIPROTKB|F1NCZ7	1209	PHLPP2 "Uncharacterized protei	0.486	0.228	0.333	2.5e-31
RGD|1562857	1359	Phlpp2 "PH domain and leucine	0.485	0.202	0.335	3.2e-31
MGI|MGI:2444928	1320	Phlpp2 "PH domain and leucine	0.485	0.208	0.335	3.8e-31
UNIPROTKB|Q6ZVD8	1323	PHLPP2 "PH domain leucine-rich	0.486	0.208	0.326	4e-31
UNIPROTKB|H3BMS5	1358	PHLPP2 "PH domain leucine-rich	0.486	0.203	0.326	4.3e-31
FB|FBgn0032749	954	Phlpp "PH domain leucine-rich	0.359	0.213	0.376	1e-30
UNIPROTKB|E2RA12	1348	PHLPP2 "Uncharacterized protei	0.485	0.204	0.322	5.7e-30
UNIPROTKB|E1BMD4	1323	PHLPP2 "Uncharacterized protei	0.492	0.210	0.323	2.1e-29
MGI|MGI:2138327	1687	Phlpp1 "PH domain and leucine	0.507	0.170	0.306	9.6e-29
UNIPROTKB|D4A5N5	1685	Phlpp1 "PH domain leucine-rich	0.462	0.155	0.314	3.5e-28

UNIPROTKB|F1NCZ7 PHLPP2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 327 (120.2 bits), Expect = 2.5e-31, Sum P(2) = 2.5e-31
 Identities = 98/294 (33%), Positives = 145/294 (49%)

Query:     1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXX 60
             LQ F +D N LT  P    S  +L  L  + N    LP      ++ L+ +   G     
Sbjct:   253 LQSFWLDGNFLTSLPEELGSLQQLSCLGLSFNNFCELPAICEK-LTILDKIAMAG----- 306

Query:    61 XXXXXXXXXGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGN--LTTLDVSENSIES 118
                       + V  R   VK    SV+LR N LK        GN  +T +D+ +N +  
Sbjct:   307 ---NLLENLDLTVLNRMNHVK----SVDLRLNNLKRAAADTLEGNKSVTYMDLRDNQLTD 359

Query:   119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
             LDL +L  LE + C RN+LK L L+G SL ++ A NN L S+ V P P +L  L++++N+
Sbjct:   360 LDLSSLGSLEQLHCERNKLKELTLSGFSLRALYANNNCLTSVSVYPVPGQLTCLELAHNQ 419

Query:   179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
             ++ +PDW     +LE +  S+N + +LPS+     L  L  L +  N L SLP L+  I 
Sbjct:   420 MQCVPDWACEAKKLEILDMSYNLLVELPSRILS-SLS-LRKLTVGHNNLQSLPPLLEHIP 477

Query:   239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQL 292
              ++ L LQ N +  LP+     +  L+ LN S N L+ LPS   G   L++ QL
Sbjct:   478 -MEVLDLQHNLLTKLPETLFVKALNLRHLNASANSLESLPSACTGEESLSMLQL 530

GO:0003824 "catalytic activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

RGD|1562857 Phlpp2 "PH domain and leucine rich repeat protein phosphatase 2" [Rattus norvegicus (taxid:10116)]

 Score = 330 (121.2 bits), Expect = 3.2e-31, Sum P(2) = 3.2e-31
 Identities = 99/295 (33%), Positives = 151/295 (51%)

Query:     1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXX 60
             LQ   +D N LT  P    +  +L  L  + N  S +P  L   ++ L+ V+  G     
Sbjct:   383 LQTLCLDGNVLTALPDELGNLQQLTSLGISFNNFSQIPEVLEK-LTMLDKVVMAG----- 436

Query:    61 XXXXXXXXXGIIVERREPEVKGELTSVNLRSNQLKGTIILGNY-GN--LTTLDVSENSIE 117
                      G++   R   VK     V+LR N LK T+I+ N  GN  +T +D+ +N + 
Sbjct:   437 -NRLEILNLGVLT--RMNHVK----HVDLRMNHLK-TVIIENLEGNKHITHMDLRDNQLT 488

Query:   118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
              LDL +L  LE + C RNQL+ L L+G SL ++ A  NKL ++ V P P+ L  L++S N
Sbjct:   489 DLDLSSLCSLEQLHCERNQLRELTLSGFSLRNLYANWNKLTAVNVYPVPSLLTSLELSRN 548

Query:   178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
              LE +PDW     +LE +  S+N +T++P +     L  L  L +  N +  LP+L+  I
Sbjct:   549 LLECIPDWACEAKKLEILDISYNLLTEVPMRILS-SLS-LRKLMVGHNHIHVLPALVEHI 606

Query:   238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQL 292
               L+ L +Q N+++ LP      +  L+ LN S N L+ LPS   G   L++ QL
Sbjct:   607 P-LEVLDVQHNTLSRLPDTLFSKALNLRYLNASANSLESLPSACAGEESLSVLQL 660

GO:0001917 "photoreceptor inner segment" evidence=IDA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA;ISO;IDA

GO:0006470 "protein dephosphorylation" evidence=IDA

GO:0042622 "photoreceptor outer segment membrane" evidence=IDA

MGI|MGI:2444928 Phlpp2 "PH domain and leucine rich repeat protein phosphatase 2" [Mus musculus (taxid:10090)]

 Score = 330 (121.2 bits), Expect = 3.8e-31, Sum P(2) = 3.8e-31
 Identities = 99/295 (33%), Positives = 149/295 (50%)

Query:     1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXX 60
             LQ   +D N LT  P    +  +L  L  + N   H+P  L   ++ L+ V   G     
Sbjct:   344 LQTLSLDGNGLTALPDELGNLRQLTSLGISFNDFRHIPEVLEK-LTMLDKVAMAG----- 397

Query:    61 XXXXXXXXXGIIVERREPEVKGELTSVNLRSNQLKGTIILGNY-GN--LTTLDVSENSIE 117
                      G +   R  +VK     V+LR N LK T+I  N  GN  +T +D+ +N + 
Sbjct:   398 -NRLEVLNLGALT--RMSQVK----HVDLRMNHLK-TVITENMEGNKHITHMDLRDNQLT 449

Query:   118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
              LDL +L  LE + C RNQL+ L L+G SL ++ A  N+L ++ V P P+ L  L++S N
Sbjct:   450 DLDLSSLCSLEQLHCERNQLRELTLSGFSLRTLYASWNRLTAVNVYPVPSLLTSLELSQN 509

Query:   178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
              LE +PDW     +LE +  SHN +T++P +     L  L  L +  N +  LP+L+  I
Sbjct:   510 LLECVPDWACEAKKLEILDISHNLLTEVPMRILS-SLS-LRKLMVGHNHIHVLPALVEHI 567

Query:   238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQL 292
               L+ L +Q N+++ LP      +  L+ LN S N L+ LPS   G   L++ QL
Sbjct:   568 P-LEVLDIQHNTLSRLPDTLFSKALNLRYLNASANSLESLPSACAGEESLSVLQL 621

GO:0001917 "photoreceptor inner segment" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISO

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|Q6ZVD8 PHLPP2 "PH domain leucine-rich repeat-containing protein phosphatase 2" [Homo sapiens (taxid:9606)]

 Score = 329 (120.9 bits), Expect = 4.0e-31, Sum P(2) = 4.0e-31
 Identities = 96/294 (32%), Positives = 149/294 (50%)

Query:     1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXX 60
             LQ   +D N LT  P    +  +L  L  + N  S +P  +   ++ L+ V+  G     
Sbjct:   347 LQTLCLDGNFLTTLPEELGNLQQLSSLGISFNNFSQIPE-VYEKLTMLDRVVMAGNCLEV 405

Query:    61 XXXXXXXXXGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGN--LTTLDVSENSIES 118
                      G++   R   +K     V+LR N LK  +I    GN  +T +D+ +N +  
Sbjct:   406 LNL------GVL--NRMNHIK----HVDLRMNHLKTMVIENLEGNKHITHVDLRDNRLTD 453

Query:   119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
             LDL +L  LE + C RNQL+ L L+G SL ++ A +N+L ++ V P P+ L  LD+S N 
Sbjct:   454 LDLSSLCSLEQLHCGRNQLRELTLSGFSLRTLYASSNRLTAVNVYPVPSLLTFLDLSRNL 513

Query:   179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
             LE +PDW     ++E +  S+N +T++P +     L  L  L L  N + +LP+L+  I 
Sbjct:   514 LECVPDWACEAKKIEVLDVSYNLLTEVPVRILS-SLS-LRKLMLGHNHVQNLPTLVEHIP 571

Query:   239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQL 292
              L+ L LQ N++  LP      +  L+ LN S N L+ LPS   G   L++ QL
Sbjct:   572 -LEVLDLQHNALTRLPDTLFSKALNLRYLNASANSLESLPSACTGEESLSMLQL 624

GO:0046872 "metal ion binding" evidence=IEA

GO:0001917 "photoreceptor inner segment" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=IEA

GO:0042622 "photoreceptor outer segment membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|H3BMS5 PHLPP2 "PH domain leucine-rich repeat-containing protein phosphatase 2" [Homo sapiens (taxid:9606)]

 Score = 329 (120.9 bits), Expect = 4.3e-31, Sum P(2) = 4.3e-31
 Identities = 96/294 (32%), Positives = 149/294 (50%)

Query:     1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXX 60
             LQ   +D N LT  P    +  +L  L  + N  S +P  +   ++ L+ V+  G     
Sbjct:   382 LQTLCLDGNFLTTLPEELGNLQQLSSLGISFNNFSQIPE-VYEKLTMLDRVVMAGNCLEV 440

Query:    61 XXXXXXXXXGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGN--LTTLDVSENSIES 118
                      G++   R   +K     V+LR N LK  +I    GN  +T +D+ +N +  
Sbjct:   441 LNL------GVL--NRMNHIK----HVDLRMNHLKTMVIENLEGNKHITHVDLRDNRLTD 488

Query:   119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
             LDL +L  LE + C RNQL+ L L+G SL ++ A +N+L ++ V P P+ L  LD+S N 
Sbjct:   489 LDLSSLCSLEQLHCGRNQLRELTLSGFSLRTLYASSNRLTAVNVYPVPSLLTFLDLSRNL 548

Query:   179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
             LE +PDW     ++E +  S+N +T++P +     L  L  L L  N + +LP+L+  I 
Sbjct:   549 LECVPDWACEAKKIEVLDVSYNLLTEVPVRILS-SLS-LRKLMLGHNHVQNLPTLVEHIP 606

Query:   239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQL 292
              L+ L LQ N++  LP      +  L+ LN S N L+ LPS   G   L++ QL
Sbjct:   607 -LEVLDLQHNALTRLPDTLFSKALNLRYLNASANSLESLPSACTGEESLSMLQL 659

GO:0003824 "catalytic activity" evidence=IEA

FB|FBgn0032749 Phlpp "PH domain leucine-rich repeat protein phosphatase" [Drosophila melanogaster (taxid:7227)]

 Score = 365 (133.5 bits), Expect = 1.0e-30, P = 1.0e-30
 Identities = 79/210 (37%), Positives = 129/210 (61%)

Query:    87 VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSS 146
             ++L+ +QL G+I++GNY  LT L+V EN +E LDL +L +LE++KCSRN+L  L++NG++
Sbjct:    51 LSLKGSQLGGSILIGNYNYLTQLEVCENEMEVLDLSSLAQLETLKCSRNKLMELIINGTN 110

Query:   147 LISVIAGNNKLQSLIVS---PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT 203
             L +++A +N L ++  +   P P +LQ +DIS+N    LP+W+  C  L  I ASHNR+ 
Sbjct:   111 LQTLVADHNYLHNISTTNTHPVPLKLQRIDISHNNFSELPNWVGACASLTAINASHNRLN 170

Query:   204 QLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQ-LFLQNSS 262
              +        + +L +L L++N L  L       +S++ L LQSN +  LP   F    +
Sbjct:   171 NVAVLLRNYRITELVSLDLAYNDLKQLDQFPEGFSSIRSLQLQSNELPSLPDNFFAVTHA 230

Query:   263 KLKVLNISKNCLKMLPSLQKGFY--LLNIS 290
             +L+ LN+S N L  LP  ++  +  L+N+S
Sbjct:   231 RLETLNVSCNKLSTLPRYEQNNHAALVNLS 260

GO:0006470 "protein dephosphorylation" evidence=IMP;NAS

GO:0004722 "protein serine/threonine phosphatase activity" evidence=IMP;NAS

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|E2RA12 PHLPP2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 322 (118.4 bits), Expect = 5.7e-30, Sum P(2) = 5.7e-30
 Identities = 95/295 (32%), Positives = 151/295 (51%)

Query:     1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXX 60
             LQ   +D N LT  P    +  +L  L  + N  S +P  +   ++ L+ V+  G     
Sbjct:   372 LQTLCLDGNFLTTLPEELGNLQQLSSLGISFNNFSQIPE-VYGKLTMLDKVVMAGNCLKV 430

Query:    61 XXXXXXXXXGIIVERREPEVKGELTSVNLRSNQLKGTIILGNY-GN--LTTLDVSENSIE 117
                      G++   R   ++     V+LR N LK T++  N  GN  +T +D+ +N + 
Sbjct:   431 LNL------GVL--NRMSHIR----HVDLRMNLLK-TVVTENLEGNKYITHMDLRDNQLA 477

Query:   118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
              LDL +L  LE + C RNQL+ L L+G SL ++ A +N+L ++ V P P++L  L++S N
Sbjct:   478 DLDLSSLCSLEQLHCERNQLRELTLSGFSLRTLYASSNRLTAVNVYPVPSQLTSLELSRN 537

Query:   178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
              LE +PDW     ++E +  S+N +T++P +     L  L  L ++ N+L SLP L+  I
Sbjct:   538 LLECVPDWACEAKKMEVLDVSYNLLTEVPMRILS-SLS-LRKLTVAHNQLQSLPMLVEHI 595

Query:   238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQL 292
               L+ L +Q N +  LP      +  L+ LN S N L+ LPS   G   L+  QL
Sbjct:   596 P-LEVLDIQHNLLTRLPDTLFSKALNLRYLNASANSLESLPSASAGEESLSALQL 649

GO:0003824 "catalytic activity" evidence=IEA

UNIPROTKB|E1BMD4 PHLPP2 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 317 (116.6 bits), Expect = 2.1e-29, Sum P(2) = 2.1e-29
 Identities = 95/294 (32%), Positives = 146/294 (49%)

Query:     1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXX 60
             LQ   +D N LT  P    +  +L  L  + N  S +P  +   ++ L+ V   G     
Sbjct:   344 LQTLCLDGNFLTALPEELGNLQQLSSLGISFNNFSQIPE-VYEKLTMLDKVFMAG----- 397

Query:    61 XXXXXXXXXGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGN--LTTLDVSENSIES 118
                      G++  +R   VK     + LR N LK  II    GN  +T +D+ +N +  
Sbjct:   398 -NRVEVLNLGVL--KRMSHVKHVDLRI-LRMNHLKTMIIENLEGNKYITHMDLRDNRLTD 453

Query:   119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
             LDL +L  LE + C RNQL+ L L+G SL ++ A +N+L ++ V P P+ L  L++S N 
Sbjct:   454 LDLSSLCNLEQLHCERNQLRELTLSGFSLRTLYANSNRLTTVNVYPVPSLLTSLELSRNL 513

Query:   179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
             LE +PDW     ++E +  S+N +T++P +     L  L  L +  N + SLP+L+  I 
Sbjct:   514 LECVPDWACEAKKIEILDVSYNLLTEVPMRILS-SLS-LRKLMVGHNHVQSLPTLVEHIP 571

Query:   239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQL 292
              L+ L +Q N +  LP      +  L+ LN S N L+ LPS   G   L+  QL
Sbjct:   572 -LEVLDVQHNLLTRLPDTLFSKALNLRYLNASANSLESLPSACAGEESLSALQL 624

GO:0005737 "cytoplasm" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

MGI|MGI:2138327 Phlpp1 "PH domain and leucine rich repeat protein phosphatase 1" [Mus musculus (taxid:10090)]

 Score = 312 (114.9 bits), Expect = 9.6e-29, Sum P(2) = 9.6e-29
 Identities = 94/307 (30%), Positives = 146/307 (47%)

Query:     1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXX 60
             LQ F +D N L   P   +S  +L +L  + N  + +P  L   ++ ++ +   G     
Sbjct:   695 LQTFLLDGNFLQSLPAELESMHQLSYLGLSFNEFTDIPEVLEK-LTAVDKLCMAGNCVET 753

Query:    61 XXXXXXXXXGIIVERREPEVKGELTSVNLRSNQLKGTII--LGNYGNLTTLDVSENSIES 118
                           RR P +K     V+LR N L+  +   +    ++T LD+ +N +  
Sbjct:   754 LRLQAL--------RRMPHIK----HVDLRLNILRKLMADEVDFVQHVTQLDLRDNKLGD 801

Query:   119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
             LD    N +E + C RNQL TL + G  L ++ A +N+L  L V P P  L ++D+S N 
Sbjct:   802 LDAMIFNNIEVLHCERNQLVTLNVCGYFLKALYASSNELAQLDVYPVPNYLSYMDVSRNC 861

Query:   179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
             LES+P+W+    +LE +   HN+I +LP++ FC     L  L    NRL  LP  + +  
Sbjct:   862 LESVPEWVCESRKLEVLDIGHNQICELPARLFCNS--SLRKLLAGHNRLARLPERLER-T 918

Query:   239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQ-LRLPGF 297
             S++ L +Q N I  LP   L  +  L+ LN S N L+ LP         +I Q L L   
Sbjct:   919 SVEVLDVQHNQITELPPNLLMKADSLRFLNASANKLETLPPATLSEETSSILQELYLTNN 978

Query:   298 CNSDALI 304
             C +D  +
Sbjct:   979 CLTDKCV 985

GO:0003824 "catalytic activity" evidence=IEA

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0004722 "protein serine/threonine phosphatase activity" evidence=ISO

GO:0005543 "phospholipid binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006470 "protein dephosphorylation" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0009649 "entrainment of circadian clock" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|D4A5N5 Phlpp1 "PH domain leucine-rich repeat protein phosphatase 1" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 3.5e-28, Sum P(2) = 3.5e-28
 Identities = 88/280 (31%), Positives = 137/280 (48%)

Query:     1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAXXX 60
             LQ F +D N L   P   ++  +L +L  + N  + +P  L   ++ ++ +   G     
Sbjct:   694 LQTFLLDGNFLQSLPAELENMHQLSYLGLSFNEFTDIPEVLEK-LTAVDKLCMAGNCMET 752

Query:    61 XXXXXXXXXGIIVERREPEVKGELTSVNLRSNQLKGTII--LGNYGNLTTLDVSENSIES 118
                           RR P +K     V+LR N L+  I   +    ++T LD+ +N +  
Sbjct:   753 LRLQAL--------RRMPHIK----HVDLRLNILRKLITDEVDFLQHVTQLDLRDNKLGD 800

Query:   119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
             LD    N +E + C RNQL TL + G  L ++ A +N+L  L V P P  L ++D+S N 
Sbjct:   801 LDAMIFNNIEVLHCERNQLVTLNICGYFLKALYASSNELVQLDVYPVPNYLSYMDVSRNC 860

Query:   179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
             LES+P+W+    +LE +   HN+I +LP++ FC     L  L    NRL  LP  + +  
Sbjct:   861 LESVPEWVCESRKLEVLDIGHNQICELPARLFCNS--SLRKLLAGHNRLARLPERLER-T 917

Query:   239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
             S++ L +Q N I  LP   L  +  L+ LN S N L+ LP
Sbjct:   918 SVEVLDVQHNQIIELPPNLLMKADSLRFLNASANKLETLP 957

GO:0003824 "catalytic activity" evidence=IEA

GO:0005543 "phospholipid binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	LOW CONFIDENCE prediction!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	567
smart00332	252	smart00332, PP2Cc, Serine/threonine phosphatases,	2e-14
cd00143	254	cd00143, PP2Cc, Serine/threonine phosphatases, fam	2e-13
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	2e-10
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-09
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-08
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-07
pfam00481	252	pfam00481, PP2C, Protein phosphatase 2C	3e-06
COG0631	262	COG0631, PTC1, Serine/threonine protein phosphatas	2e-05
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	8e-05
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PRK15387	788	PRK15387, PRK15387, E3 ubiquitin-protein ligase Ss	0.001
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	0.002
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	0.002
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam12799	43	pfam12799, LRR_4, Leucine Rich repeats (2 copies)	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.003
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.004

>gnl|CDD|214625 smart00332, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 60/229 (26%), Positives = 93/229 (40%), Gaps = 58/229 (25%)

Query: 295 PGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEE----RTVKETASDYMKYTMLTAH 349
           P   +S    G+FD G  G  A+  +   +P IL EE    +   E   + ++   L+  
Sbjct: 31  PDLSDSGGFFGVFD-GHGGSEAAKFLSKNLPEILAEELIKEKDELEDVEEALRKAFLSTD 89

Query: 350 REIKDSLHRYSLS-ATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGS--LTFTHAPTL 406
            EI + L   S S A +  +          L++A+VG+++A+LCR   +  LT  H P+ 
Sbjct: 90  EEILEELEALSGSTAVVALI------SGNKLYVANVGDSRAVLCRNGKAVQLTEDHKPSN 143

Query: 407 S---------PPVPPQGSCPLSF----------------PDPHVTEVMLHENDHFLILAN 441
                           G                       +P VT V L E D FLILA+
Sbjct: 144 EDERARIEAAGGFVINGRVNGVLALSRAIGDFFLKPYVSAEPDVTVVELTEKDDFLILAS 203

Query: 442 KSVSE------------------PVLAAKRIQDLAQSYGSEDNLSVLVL 472
             + +                  P  AAKR+ DLA + GS+DN++V+V+
Sbjct: 204 DGLWDVLSNQEVVDIVRKHLSKDPKEAAKRLIDLALARGSKDNITVVVV 252

The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity. Length = 252

>gnl|CDD|238083 cd00143, PP2Cc, Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity

 Score = 70.0 bits (172), Expect = 2e-13
 Identities = 56/235 (23%), Positives = 84/235 (35%), Gaps = 65/235 (27%)

Query: 298 CNSDALIGIFDSGDNGDIASTLVQSI-PRILLEE-----RTVKETASDYMKYTMLTAHRE 351
                L G+FD G  G  A      +    LLEE        +E   + ++   L A  E
Sbjct: 27  NEDGGLFGVFD-GHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADEE 85

Query: 352 IKDSLHRYSLS------ATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGS--LTFTHA 403
           I +              A +  +          L++A+VG+++A+LCR   +  LT  H 
Sbjct: 86  ILEEAQDEPDDARSGTTAVVALI------RGNKLYVANVGDSRAVLCRNGEAVQLTKDHK 139

Query: 404 PT--------------LSPPVPPQGSC-----------PLSFPDPHVTEVMLHENDHFLI 438
           P               +S    P               P    +P VT V L E+D FLI
Sbjct: 140 PVNEEERERIEKAGGRVSNGRVPGVLAVTRALGDFDLKPGVSAEPDVTVVKLTEDDDFLI 199

Query: 439 LA-------------------NKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRF 474
           LA                     +  +   AA+ + DLA   GS DN++V+V+R 
Sbjct: 200 LASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRRGSHDNITVVVVRL 254

Length = 254

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 63.3 bits (153), Expect = 2e-10
 Identities = 59/153 (38%), Positives = 79/153 (51%), Gaps = 19/153 (12%)

Query: 127 LESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI 186
           L+ +  S NQL +L    S L  + A NN+L SL     P+ LQ L +S N+L SLP   
Sbjct: 304 LQELSVSDNQLASLPALPSELCKLWAYNNQLTSL--PTLPSGLQELSVSDNQLASLP--- 358

Query: 187 DTCP-ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245
            T P EL  ++A +NR+T LP+         L  L +S NRLTSLP L  +   LK L +
Sbjct: 359 -TLPSELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTSLPVLPSE---LKELMV 409

Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
             N +  LP L     S L  L++ +N L  LP
Sbjct: 410 SGNRLTSLPML----PSGLLSLSVYRNQLTRLP 438

Length = 788

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 60.4 bits (146), Expect = 1e-09
 Identities = 57/199 (28%), Positives = 90/199 (45%), Gaps = 12/199 (6%)

Query: 81  KGELTSVNLRSNQLK-GTIILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQL 137
           K  L  ++L  N+++     L N  NL  LD+S N +  L   L  L+ L ++  S N++
Sbjct: 139 KSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGNKI 198

Query: 138 KTL--VLNGSSLISVI--AGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELE 193
             L   +   S +  +  + N+ ++ L        L  L++S N+LE LP+ I     LE
Sbjct: 199 SDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNLE 258

Query: 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINIL 253
           T+  S+N+I+ + S      L  L  L LS N L++   LI  +  L  L L        
Sbjct: 259 TLDLSNNQISSISSLG---SLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKA 315

Query: 254 PQLFLQNSSKLKVLNISKN 272
             L L+ +S L   NI  N
Sbjct: 316 --LELKLNSILLNNNILSN 332

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 55.2 bits (133), Expect = 7e-08
 Identities = 83/309 (26%), Positives = 133/309 (43%), Gaps = 52/309 (16%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSEN--------------SIESLDLGA------ 123
           L  +NL +N   G+I  G+  NL TLD+S N              S++ LDLG       
Sbjct: 120 LRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK 179

Query: 124 -------LNRLESIKCSRNQLKTLVLNG----SSLISVIAGNNKLQSLIVSP--RPARLQ 170
                  L  LE +  + NQL   +        SL  +  G N L   I         L 
Sbjct: 180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLN 239

Query: 171 HLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT 228
           HLD+ YN L   +P  +     L+ +F   N+++  +P   F   L KL +L LS N L+
Sbjct: 240 HLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSLS 297

Query: 229 -SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPS---LQKG 283
             +P L+ Q+ +L+ L L SN+      + L +  +L+VL +  N     +P        
Sbjct: 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNN 357

Query: 284 FYLLNISQLRLPG-----FCNSDALIG--IFDSGDNGDIASTL--VQSIPRILLEERTVK 334
             +L++S   L G      C+S  L    +F +   G+I  +L   +S+ R+ L++ +  
Sbjct: 358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFS 417

Query: 335 -ETASDYMK 342
            E  S++ K
Sbjct: 418 GELPSEFTK 426

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 53.9 bits (129), Expect = 2e-07
 Identities = 51/197 (25%), Positives = 95/197 (48%), Gaps = 14/197 (7%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
           ++T++ L +N+LK ++     GN+ TL  + N + S+     + ++ ++ S N++  L  
Sbjct: 200 QITTLILDNNELK-SLPENLQGNIKTLYANSNQLTSIPATLPDTIQEMELSINRITELPE 258

Query: 143 N-GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNR 201
              S+L S+   +NK+  L     P  L++L +  N + +LP  + +   +  +    N 
Sbjct: 259 RLPSALQSLDLFHNKISCL-PENLPEELRYLSVYDNSIRTLPAHLPS--GITHLNVQSNS 315

Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
           +T LP          L TL+   N LTSLP+ +     L+ L +  N I +LP+      
Sbjct: 316 LTALPETL----PPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL---P 366

Query: 262 SKLKVLNISKNCLKMLP 278
             +  L++S+N L  LP
Sbjct: 367 PTITTLDVSRNALTNLP 383

Length = 754

>gnl|CDD|215938 pfam00481, PP2C, Protein phosphatase 2C

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 36/141 (25%), Positives = 54/141 (38%), Gaps = 54/141 (38%)

Query: 379 LHIASVGEAKAILCRQAGS---LTFTHAPTL------------SPPVP------------ 411
           L++A+VG+++A+LCR   +   LT  H P+                              
Sbjct: 112 LYVANVGDSRAVLCRNGNAIKQLTEDHKPSNEDERRRIRGAGGFVSRNGRVNGVLAVSRA 171

Query: 412 -------PQGSCPLSFPDPHVTEVMLHENDHFLILA-------------------NKSVS 445
                       P+S  +P VT   + E+D FLILA                     S  
Sbjct: 172 FGDFELKKGKPQPVS-AEPDVTSHKITESDEFLILASDGLWDVLSDQEVVDIVRSELSDG 230

Query: 446 EPVLAAKRIQDLAQSYGSEDN 466
            P+ AA+++ D A +YGSEDN
Sbjct: 231 SPMEAAEKLVDEAIAYGSEDN 251

Protein phosphatase 2C is a Mn++ or Mg++ dependent protein serine/threonine phosphatase. Length = 252

>gnl|CDD|223704 COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 51/228 (22%), Positives = 90/228 (39%), Gaps = 48/228 (21%)

Query: 299 NSDALIGIFD--SGDN-GDIAS-TLVQSIPRILLEERTVKETAS--DYMKYTMLTAHREI 352
           N   L  + D   G   G++AS   V+++ R+  E        S  + +K  +L A+  I
Sbjct: 36  NLLLLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAI 95

Query: 353 -KDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCR--QAGSLTFTHAPTLSPP 409
            ++      +      L L  +     L++A+VG+++A L R  +   LT  H  +L   
Sbjct: 96  AEEGQLNEDVRGMGTTLVL-LLIRGNKLYVANVGDSRAYLLRDGELKQLTEDH--SLVNR 152

Query: 410 VPPQGSCP-------------------LSFPDPHVTEVMLHENDHFLILAN--------- 441
           +  +G                          +P +TE+ L   D FL+L +         
Sbjct: 153 LEQRGIITPEEARSHPRRNALTRALGDFDLLEPDITELELEPGD-FLLLCSDGLWDVVSD 211

Query: 442 -------KSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSR 482
                  K+   P  AA ++ +LA   G  DN++V+++R  G    SR
Sbjct: 212 DEIVDILKNSETPQEAADKLIELALEGGGPDNITVVLVRLNGEGETSR 259

Length = 262

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 46.7 bits (110), Expect = 3e-05
 Identities = 72/265 (27%), Positives = 108/265 (40%), Gaps = 60/265 (22%)

Query: 9   NDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRH--PMSPLNNVIEHGIAEEREEDFEQ 66
           N+LT  P      P L+ L  + N+++ LPV       +S  +N + H            
Sbjct: 232 NNLTSLPALP---PELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH------------ 276

Query: 67  DEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL------- 119
                      P +   L  + +  NQL    +L     L  L VS+N + SL       
Sbjct: 277 ----------LPALPSGLCKLWIFGNQLTSLPVLPP--GLQELSVSDNQLASLPALPSEL 324

Query: 120 -DLGALNR-----------LESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA 167
             L A N            L+ +  S NQL +L    S L  + A NN+L SL     P+
Sbjct: 325 CKLWAYNNQLTSLPTLPSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL--PALPS 382

Query: 168 RLQHLDISYNELESLPDWIDTCP-ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
            L+ L +S N L SLP      P EL+ +  S NR+T LP          L +L +  N+
Sbjct: 383 GLKELIVSGNRLTSLP----VLPSELKELMVSGNRLTSLPML-----PSGLLSLSVYRNQ 433

Query: 227 LTSLPSLIRQIASLKYLFLQSNSIN 251
           LT LP  +  ++S   + L+ N ++
Sbjct: 434 LTRLPESLIHLSSETTVNLEGNPLS 458

Length = 788

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 6e-05
 Identities = 21/60 (35%), Positives = 33/60 (55%), Gaps = 2/60 (3%)

Query: 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSI 250
           L+++  S+NR+T +P   F + L  L  L LS N LTS+       + SL+ L L  N++
Sbjct: 2   LKSLDLSNNRLTVIPDGAF-KGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.2 bits (95), Expect = 8e-05
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)

Query: 216 KLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
            L +L LS NRLT +P    + + +LK L L  N++  +          L+ L++S N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Length = 60

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 60/214 (28%), Positives = 104/214 (48%), Gaps = 35/214 (16%)

Query: 84  LTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIE-SLDLGALNRLESIKCSRN---- 135
           + ++NL +NQL G I   I     +L  L++S N+   S+  G++  LE++  S N    
Sbjct: 95  IQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG 154

Query: 136 ----------QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPD 184
                      LK L L G+ L+  I  +  L +L        L+ L ++ N+L   +P 
Sbjct: 155 EIPNDIGSFSSLKVLDLGGNVLVGKIPNS--LTNL------TSLEFLTLASNQLVGQIPR 206

Query: 185 WIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKY 242
            +     L+ I+  +N ++ ++P +     L  L+ L L +N LT  +PS +  + +L+Y
Sbjct: 207 ELGQMKSLKWIYLGYNNLSGEIPYEI--GGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQY 264

Query: 243 LFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCL 274
           LFL  N ++  I P +F  +  KL  L++S N L
Sbjct: 265 LFLYQNKLSGPIPPSIF--SLQKLISLDLSDNSL 296

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 3e-04
 Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 168 RLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
            L+ LD+S N L  +PD      P L+ +  S N +T +  + F   L  L +L LS N 
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAF-SGLPSLRSLDLSGNN 59

Query: 227 L 227
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|185285 PRK15387, PRK15387, E3 ubiquitin-protein ligase SspH2; Provisional

 Score = 41.7 bits (97), Expect = 0.001
 Identities = 48/158 (30%), Positives = 75/158 (47%), Gaps = 27/158 (17%)

Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
           + + +++  +N L SL     P  L+ L++S N+L SLP       EL +IF+  N +T 
Sbjct: 222 AHITTLVIPDNNLTSL--PALPPELRTLEVSGNQLTSLPVLPPGLLEL-SIFS--NPLTH 276

Query: 205 LPS--------QFFCRELGK-------LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
           LP+          F  +L         L  L +S N+L SLP+L  ++     L+  +N 
Sbjct: 277 LPALPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLASLPALPSELCK---LWAYNNQ 333

Query: 250 INILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLL 287
           +  LP L     S L+ L++S N L  LP+L    Y L
Sbjct: 334 LTSLPTL----PSGLQELSVSDNQLASLPTLPSELYKL 367

Length = 788

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 41.0 bits (96), Expect = 0.002
 Identities = 58/215 (26%), Positives = 87/215 (40%), Gaps = 37/215 (17%)

Query: 84  LTSVNLRSNQLKGTII--LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
           L  + L SN+  G I   LG + NLT LD+S N++          +    CS   L  L+
Sbjct: 334 LQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTG-------EIPEGLCSSGNLFKLI 386

Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQH-------------------LDISYNELE-S 181
           L  +SL   I    K      S R  RLQ                    LDIS N L+  
Sbjct: 387 LFSNSLEGEIP---KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGR 443

Query: 182 LPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIAS 239
           +       P L+ +  + N+    LP  F  +   +L  L LS N+ + ++P  +  ++ 
Sbjct: 444 INSRKWDMPSLQMLSLARNKFFGGLPDSFGSK---RLENLDLSRNQFSGAVPRKLGSLSE 500

Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
           L  L L  N ++      L +  KL  L++S N L
Sbjct: 501 LMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQL 535

Length = 968

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 41.2 bits (96), Expect = 0.002
 Identities = 53/212 (25%), Positives = 86/212 (40%), Gaps = 33/212 (15%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           +QE  +  N +TE P    S   L+ L    N+IS LP  L   +  L+ V ++ I    
Sbjct: 243 IQEMELSINRITELPERLPS--ALQSLDLFHNKISCLPENLPEELRYLS-VYDNSI---- 295

Query: 61  EEDFEQDEDGIIVERREPE-VKGELTSVNLRSNQLK---GTIILGNYGNLTTLDVSENSI 116
                         R  P  +   +T +N++SN L     T+       L TL+  EN++
Sbjct: 296 --------------RTLPAHLPSGITHLNVQSNSLTALPETLPP----GLKTLEAGENAL 337

Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176
            SL       L+ +  S+NQ+  L       I+ +  +    + +    PA LQ +  S 
Sbjct: 338 TSLPASLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLPAALQIMQASR 397

Query: 177 NEL----ESLPDWIDTCPELETIFASHNRITQ 204
           N L    ESLP +    P+   I   +N  ++
Sbjct: 398 NNLVRLPESLPHFRGEGPQPTRIIVEYNPFSE 429

Length = 754

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 13/41 (31%), Positives = 22/41 (53%)

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           +LK L L +N + ++P    +    LKVL++S N L  +  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISP 41

Length = 60

>gnl|CDD|205079 pfam12799, LRR_4, Leucine Rich repeats (2 copies)

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 1/40 (2%)

Query: 168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPS 207
            L+ LD+S N++  LP  +   P LET+  S N+IT L  
Sbjct: 2   NLETLDLSNNQITDLPP-LSNLPNLETLDLSGNKITDLSP 40

Leucine rich repeats are short sequence motifs present in a number of proteins with diverse functions and cellular locations. These repeats are usually involved in protein-protein interactions. Each Leucine Rich Repeat is composed of a beta-alpha unit. These units form elongated non-globular structures. Leucine Rich Repeats are often flanked by cysteine rich domains. Length = 43

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.0 bits (93), Expect = 0.003
 Identities = 61/262 (23%), Positives = 104/262 (39%), Gaps = 36/262 (13%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+E  +  N +   P    + P LK L  + N +S LP  L   +S LNN+   G     
Sbjct: 142 LKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLP-KLLSNLSNLNNLDLSG----- 195

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESL 119
                   + I     E E+   L  ++L +N +   +  L N  NL+ L++S N +E L
Sbjct: 196 --------NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDL 247

Query: 120 D--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS------PRPARLQH 171
              +G L+ LE++  S NQ+ +        IS +     L+ L +S        P     
Sbjct: 248 PESIGNLSNLETLDLSNNQISS--------ISSLGSLTNLRELDLSGNSLSNALPLIALL 299

Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
           L +    L  L        +L +I  ++N I             +  ++  S N L +L 
Sbjct: 300 LLLLELLLNLLLTLKALELKLNSILLNNN-ILSNGE----TSSPEALSILESLNNLWTLD 354

Query: 232 SLIRQIASLKYLFLQSNSINIL 253
           + + +    +Y+    N+I  L
Sbjct: 355 NALDESNLNRYIVKNPNAIGSL 376

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 36.0 bits (84), Expect = 0.003
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 5/59 (8%)

Query: 84  LTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQL 137
           L S++L +N+L            NL  LD+S N++ S+   A   L  L S+  S N L
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 23/75 (30%), Positives = 34/75 (45%), Gaps = 15/75 (20%)

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
           NL +LD+S N +  +  GA   L +       LK L L+G++L S+         L    
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPN-------LKVLDLSGNNLTSISP--EAFSGL---- 47

Query: 165 RPARLQHLDISYNEL 179
               L+ LD+S N L
Sbjct: 48  --PSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 35.6 bits (83), Expect = 0.004
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 146 SLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRI 202
           +L S+   NN+L  +          L+ LD+S N L S+ P+     P L ++  S N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	567
KOG0618|consensus	1081		100.0
KOG4194|consensus	873		99.96
PLN03145	365	Protein phosphatase 2c; Provisional	99.95
KOG4194|consensus	873		99.95
KOG0697|consensus	379		99.94
KOG0698|consensus	330		99.93
PTZ00224	381	protein phosphatase 2C; Provisional	99.93
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.92
PF00481	254	PP2C: Protein phosphatase 2C; InterPro: IPR001932	99.91
COG0631	262	PTC1 Serine/threonine protein phosphatase [Signal	99.91
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.91
KOG0444|consensus	1255		99.91
KOG0444|consensus	1255		99.91
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.9
KOG0472|consensus	565		99.89
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.87
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.87
PRK14559	645	putative protein serine/threonine phosphatase; Pro	99.86
KOG0472|consensus	565		99.85
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.85
KOG0700|consensus	390		99.84
smart00332	255	PP2Cc Serine/threonine phosphatases, family 2C, ca	99.82
cd00143	254	PP2Cc Serine/threonine phosphatases, family 2C, ca	99.8
KOG0618|consensus	1081		99.79
KOG0699|consensus	542		99.78
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.77
KOG4237|consensus	498		99.76
KOG1323|consensus	493		99.75
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.72
KOG0617|consensus	264		99.63
KOG4237|consensus	498		99.63
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.59
KOG0617|consensus	264		99.54
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.53
KOG0532|consensus	722		99.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.31
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.29
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.27
KOG1909|consensus	382		99.26
KOG0532|consensus	722		99.24
KOG1259|consensus	490		99.22
KOG3207|consensus	505		99.2
KOG1379|consensus	330		99.18
KOG1259|consensus	490		99.17
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.15
KOG3207|consensus	505		99.14
KOG0531|consensus	414		99.11
KOG1909|consensus	382		99.11
KOG0531|consensus	414		99.03
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.8
KOG4579|consensus	177		98.73
smart00331	193	PP2C_SIG Sigma factor PP2C-like phosphatases.	98.68
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.68
KOG1859|consensus	1096		98.67
PLN03150	623	hypothetical protein; Provisional	98.6
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.55
KOG1859|consensus	1096		98.55
PF07228	193	SpoIIE: Stage II sporulation protein E (SpoIIE); I	98.5
TIGR02865	764	spore_II_E stage II sporulation protein E. Stage I	98.48
PLN03150	623	hypothetical protein; Provisional	98.42
KOG4579|consensus	177		98.38
KOG1644|consensus	233		98.35
KOG4658|consensus	889		98.31
PF13672	212	PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A	98.25
PRK15386	426	type III secretion protein GogB; Provisional	98.25
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.19
PRK15386	426	type III secretion protein GogB; Provisional	98.16
KOG2982|consensus	418		98.16
KOG4658|consensus	889		98.16
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.15
KOG2982|consensus	418		98.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.11
KOG1644|consensus	233		97.92
KOG2120|consensus	419		97.83
KOG2120|consensus	419		97.82
KOG3665|consensus	699		97.42
KOG2739|consensus	260		97.39
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.24
KOG3665|consensus	699		97.19
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.18
KOG2123|consensus	388		97.13
KOG2739|consensus	260		97.13
KOG2123|consensus	388		96.88
KOG4341|consensus	483		96.64
COG2208	367	RsbU Serine phosphatase RsbU, regulator of sigma s	95.88
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.7
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.33
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.91
KOG4308|consensus	478		94.89
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	94.45
smart00370	26	LRR Leucine-rich repeats, outliers.	94.45
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.31
KOG4308|consensus	478		93.85
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	93.8
smart00370	26	LRR Leucine-rich repeats, outliers.	93.8
KOG0473|consensus	326		92.59
KOG0473|consensus	326		91.53
KOG0699|consensus	542		91.26
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	86.39
KOG3864|consensus	221		84.81
KOG4341|consensus	483		84.75
smart00365	26	LRR_SD22 Leucine-rich repeat, SDS22-like subfamily	81.69
KOG1947|consensus	482		81.38
smart00364	26	LRR_BAC Leucine-rich repeats, bacterial type.	80.24

>KOG0618|consensus

Probab=100.00  E-value=4.2e-48  Score=409.43  Aligned_cols=531  Identities=31%  Similarity=0.433  Sum_probs=413.2

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |+.|||++|.+..+|..+..+.+|+.|+++.|.|..+|... .++..|+.+             ....+.+...+..+..
T Consensus        47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~-~~~~~l~~l-------------nL~~n~l~~lP~~~~~  112 (1081)
T KOG0618|consen   47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSC-SNMRNLQYL-------------NLKNNRLQSLPASISE  112 (1081)
T ss_pred             eEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhh-hhhhcchhh-------------eeccchhhcCchhHHh
Confidence            67899999999999988999999999999999999988544 356666665             3333344444455556


Q ss_pred             CCCccEEEecCCCCCCcc-c----------------------------------------cCCCCCcc-EEEccCCCCCC
Q psy12423         81 KGELTSVNLRSNQLKGTI-I----------------------------------------LGNYGNLT-TLDVSENSIES  118 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~-~----------------------------------------l~~l~~L~-~L~L~~n~l~~  118 (567)
                      +.+|++|++++|++...+ .                                        .....+|+ .|+|++|.+..
T Consensus       113 lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~  192 (1081)
T KOG0618|consen  113 LKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEV  192 (1081)
T ss_pred             hhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhh
Confidence            666777777776654322 0                                        00112233 38888888886


Q ss_pred             CCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECc
Q psy12423        119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFAS  198 (567)
Q Consensus       119 ~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls  198 (567)
                      +++..+.+|+.|.+..|++..+....++|+.|+.++|.++.......+.+|++++++.|+++.+|+|+..+.+|+.|++.
T Consensus       193 ~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~~lp~wi~~~~nle~l~~n  272 (1081)
T KOG0618|consen  193 LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLSNLPEWIGACANLEALNAN  272 (1081)
T ss_pred             hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhhcchHHHHhcccceEeccc
Confidence            77888899999999999999999999999999999999997766666899999999999999999999999999999999


Q ss_pred             CCCCCCCChhhhh---------------------ccCCCccEEECCCCCCCCCchhh-----------------------
Q psy12423        199 HNRITQLPSQFFC---------------------RELGKLHTLQLSFNRLTSLPSLI-----------------------  234 (567)
Q Consensus       199 ~N~l~~l~~~~~~---------------------~~l~~L~~L~Ls~N~l~~lp~~~-----------------------  234 (567)
                      +|.++.+|..++.                     ..++.|+.|+|..|+|..+|+.+                       
T Consensus       273 ~N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~  352 (1081)
T KOG0618|consen  273 HNRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPS  352 (1081)
T ss_pred             chhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccccccc
Confidence            9999877766543                     12668889999999887765421                       


Q ss_pred             ---------------------------hCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC------
Q psy12423        235 ---------------------------RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ------  281 (567)
Q Consensus       235 ---------------------------~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~------  281 (567)
                                                 .++++|+.|+|++|+|..+|...+.++..|++|+||+|+++.||..+      
T Consensus       353 ~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L  432 (1081)
T KOG0618|consen  353 YEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRL  432 (1081)
T ss_pred             ccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhh
Confidence                                       14678999999999999999988888888888888888888777540      


Q ss_pred             -------------------------------------------cCCcc--------------------------------
Q psy12423        282 -------------------------------------------KGFYL--------------------------------  286 (567)
Q Consensus       282 -------------------------------------------~~~~~--------------------------------  286 (567)
                                                                 ..+..                                
T Consensus       433 ~tL~ahsN~l~~fPe~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~~~  512 (1081)
T KOG0618|consen  433 HTLRAHSNQLLSFPELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLNNT  512 (1081)
T ss_pred             HHHhhcCCceeechhhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcccccchhhhHHhhhhhheecccCCC
Confidence                                                       01111                                


Q ss_pred             -----------------------ceeecccCCccccC-CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHH
Q psy12423        287 -----------------------LNISQLRLPGFCNS-DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMK  342 (567)
Q Consensus       287 -----------------------L~~~~l~~~~~~~~-~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~  342 (567)
                                             +.+......+|+.. .+.|+.++|..+..++..+.+..-.++.++........++|.
T Consensus       513 ~d~~~n~~~~t~Gv~~~~gqrnk~c~~~~~v~nf~~~~~a~~g~~dgs~n~~v~~~vq~~ma~~L~eev~~~~~et~~mr  592 (1081)
T KOG0618|consen  513 PDGNVNAFLWTYGVAGVSGQRNKVCSRAVWVENFFLNPQATFGCFDGSRNSRVLSLVQDTMASYLAEEVQLYGNETEQMR  592 (1081)
T ss_pred             CccccceeheeeccchhcccccchhhhhhhhhhcccCCcceEEEEcCCCchhHHHHHHHHHHHHHHHHHHhccChHHHHH
Confidence                                   11111112344444 778999999999999999999999999999888888888999


Q ss_pred             HHHHHHHHHHhhhcccccCceeEEEEeecCc--cceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------------
Q psy12423        343 YTMLTAHREIKDSLHRYSLSATLCHLSLHPV--THRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------------  405 (567)
Q Consensus       343 ~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~--~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------  405 (567)
                      .+|+..+++++..++..++.++.|.+.-.+-  ...+++.+|++|+|.|++||+|+.++.|+...               
T Consensus       593 ~~fl~~~rklg~~g~~lg~~~~~~~i~~d~~~~asS~~l~~Anvg~c~avls~ng~~~p~t~~~~~~v~~eE~~RI~~~~  672 (1081)
T KOG0618|consen  593 NTFLRLNRKLGEEGQVLGGSVVLCQIVEDSLSPASSKTLFAANVGTCMAVLSRNGKPLPTTRSPMLEVDREEYKRIVDSK  672 (1081)
T ss_pred             HHHHHHhhhhhhhhccccchhhheeecccccCcccchhhhHhhhccchhhhhhcCCcCcccccccccCCHHHHHHHHHhc
Confidence            9999999999999999999999998876533  33457999999999999999999888765542               


Q ss_pred             --------------CCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC----------------CHHHHHHHHH
Q psy12423        406 --------------LSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS----------------EPVLAAKRIQ  455 (567)
Q Consensus       406 --------------~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~----------------~~~~~a~~l~  455 (567)
                                    .+|++|.+...|+|.|.|+|....|+++|+|||+|+.++|                ||..||++|+
T Consensus       673 g~i~ed~k~ngvt~~tR~iG~~~l~P~v~p~Phv~~~~Lt~qdE~LIvgn~~lW~~Lsid~a~~~vRn~~dpL~AAkKL~  752 (1081)
T KOG0618|consen  673 GFITEDNKLNGVTSSTRAIGPFSLFPHVLPDPHVSVVILTEQDEFLIVGNKQLWSVLSIDTAVDAVRNVEDPLLAAKKLC  752 (1081)
T ss_pred             CeecCCCeeeceeeeeeecccccccccccCCCceeeEecccCceEEEEcchHHhhhccHHHHHHHHhcCCchHHHHHHHH
Confidence                          6899999999999999999999999999999999999999                8999999999


Q ss_pred             HHHHHcCCCCCcEEEEEEeC--CCCcChhhH-------HHHHhhh-cCC---CC---------------CCCCCCcccc-
Q psy12423        456 DLAQSYGSEDNLSVLVLRFQ--GSEFDSRTR-------DAKLSSM-RKL---GV---------------QDPECPWTIE-  506 (567)
Q Consensus       456 ~~a~~~g~~dnit~~vv~~~--~~~~~~~~~-------~~~~~~~-~~~---~~---------------~~~~~~~~~~-  506 (567)
                      |.|++||+.|||+|+||++.  .+.++++..       +.+++.+ ++|   +.               .|++-|+.+. 
T Consensus       753 d~AqSYgc~~nv~vlVv~l~~~~~~~~e~t~~~~~~~~~f~~st~~~rp~pvs~P~ss~~m~~r~~~~~sna~m~re~~~  832 (1081)
T KOG0618|consen  753 DLAQSYGCAENVSVLVVRLNHLEECVDEFTLEKNPNPSEFKDSTRLDRPQPVSPPSSSIAMVFRTAIKTSNAIMRRELRQ  832 (1081)
T ss_pred             HHHHhcccccCeeEEEEEeecchhhccccccccCCCccccccccccccCCCCCCCCcchHHHHHHHHhhhhHHHHHHhcc
Confidence            99999999999999999999  667777777       5566664 222   11               5666666666 


Q ss_pred             ---CCCCCCCCCCCCCCCCCc------eee-------------eeeeeccCCcccccCCcc
Q psy12423        507 ---YDRSSPSGQSDQASSGHT------AVM-------------TDTIYNKMDKYNFGDRRS  545 (567)
Q Consensus       507 ---~~~~~~~~~~~~~~~~~~------~~~-------------~~~~~~~~~~~~~~~~~~  545 (567)
                         +.+..|+|+.+.+.-.-+      .||             +..++-+-|-|--.++|.
T Consensus       833 ~~~a~v~~p~ga~~~~~p~~p~~~~c~s~p~~ll~~q~~~ei~~~~s~~s~ngldl~~~r~  893 (1081)
T KOG0618|consen  833 EPGAEVKTPGGAFMVAFPAPPSLDWCSSVPLPLLSAQEPEEIATFQSVTSSNGLDLSTERF  893 (1081)
T ss_pred             CCCCCCCCCCCccccccCCCCCccchhccccccccccccchhhhhhhhcccCCcccccccc
Confidence               367788888765432222      122             344455666677777775

>KOG4194|consensus

Probab=99.96  E-value=2.5e-31  Score=269.23  Aligned_cols=420  Identities=18%  Similarity=0.192  Sum_probs=256.9

Q ss_pred             CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |+.||||.|.|++|| .+|..-.++++|+|++|.|+.+..+.|.+|..|..+          .+..+..+.++.  ..++
T Consensus       151 lrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tl----------kLsrNrittLp~--r~Fk  218 (873)
T KOG4194|consen  151 LRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTL----------KLSRNRITTLPQ--RSFK  218 (873)
T ss_pred             hhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheee----------ecccCcccccCH--HHhh
Confidence            456777777777776 356666677777777777777766666655544433          222333333333  4556


Q ss_pred             CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcEE
Q psy12423         80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLISV  150 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L  150 (567)
                      .+++|+.|+|..|+|....  .|.++++|+.|.|..|.|..+.   |..+.++++|+|..|++..+.    .++.+|+.|
T Consensus       219 ~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L  298 (873)
T KOG4194|consen  219 RLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQL  298 (873)
T ss_pred             hcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhh
Confidence            6778888888888776543  6777888888888888777663   666778888888888877654    456788888


Q ss_pred             EcCCCccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423        151 IAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL  227 (567)
Q Consensus       151 ~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l  227 (567)
                      ++++|.|..+....+  .++|+.|+|++|+|++++ ..|..+..|++|+|++|+|+.+....|.+ +++|+.|||++|.|
T Consensus       299 ~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~-lssL~~LdLr~N~l  377 (873)
T KOG4194|consen  299 DLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVG-LSSLHKLDLRSNEL  377 (873)
T ss_pred             ccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHH-hhhhhhhcCcCCeE
Confidence            888888888777665  778888888888888875 46777888888888888888888887776 88888888888877


Q ss_pred             CC-C---chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcc-ccC--
Q psy12423        228 TS-L---PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGF-CNS--  300 (567)
Q Consensus       228 ~~-l---p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~-~~~--  300 (567)
                      .. +   ...|.++++|+.|.|.+|+|..||...|.+++.|+.|||.+|.|.+|....+.--.|+-+.+....| |++  
T Consensus       378 s~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~Lk~Lv~nSssflCDCql  457 (873)
T KOG4194|consen  378 SWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPMELKELVMNSSSFLCDCQL  457 (873)
T ss_pred             EEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccchhhhhhhcccceEEeccH
Confidence            64 2   2346778888888888888888888888888888888888888887765433211443333333333 322  


Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHH--HHhhhc-ccccCceeEEEEeec-Cccce
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHR--EIKDSL-HRYSLSATLCHLSLH-PVTHR  376 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~--~i~~~~-~~~~~st~~~~~~~~-~~~~~  376 (567)
                      .++..|+.+..-. .+....|..|+++...-.......+..|.-+.+..-  +..... .....-+..|.+... .+   
T Consensus       458 ~Wl~qWl~~~~lq-~sv~a~CayPe~Lad~~i~svd~~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssas---  533 (873)
T KOG4194|consen  458 KWLAQWLYRRKLQ-SSVIAKCAYPEPLADQSIVSVDTANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSAS---  533 (873)
T ss_pred             HHHHHHHHhcccc-cceeeeccCCcccccceeEeechhhceecCCCCcceecCchHhhhhhccceEEEEEeccCCCC---
Confidence            3333343332111 233344555666655544444444544443322110  000000 011112333433221 11   


Q ss_pred             EEEEEEEecCceEEEEeCCeeeeCCCCCC----CCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC
Q psy12423        377 YMLHIASVGEAKAILCRQAGSLTFTHAPT----LSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS  445 (567)
Q Consensus       377 ~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~----~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~  445 (567)
                       .+.++|--|.. +.-     ....+|..    .-| -|.++..-...+.-...-+..++.++|=.+++..+-
T Consensus       534 -plsi~WR~dne-vq~-----rv~ved~a~~~~q~r-~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FG  598 (873)
T KOG4194|consen  534 -PLSIEWRKDNE-VQP-----RVDVEDFATFLSQNR-NGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFG  598 (873)
T ss_pred             -CceeEeeeccc-cCc-----ccchhcchhhhhhhc-cCccchhhhhhheeeeeeeecccCceEEEEEecccC
Confidence             45555555553 211     12222222    222 233332223344556666667777888888887775

>PLN03145 Protein phosphatase 2c; Provisional

Probab=99.95  E-value=2e-27  Score=241.60  Aligned_cols=172  Identities=22%  Similarity=0.356  Sum_probs=145.6

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcc---cccCceeEEEEeecCccceE
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLH---RYSLSATLCHLSLHPVTHRY  377 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~---~~~~st~~~~~~~~~~~~~~  377 (567)
                      ..+|+++|||++...+.+....++..+.+.........+++..+|..++..+.+...   ...+++|++++.+.+.    
T Consensus       103 ~~lf~V~DGhGG~~age~as~~l~~~i~~~~~~~~~~~~al~~af~~~d~~~~~~~~~~~~~~~GTTavv~li~~~----  178 (365)
T PLN03145        103 SAFYGVFDGHGGKHAADFACYHLPRFIVEDEDFPREIEKVVSSAFLQTDTAFAEACSLDASLASGTTALAALVVGR----  178 (365)
T ss_pred             ceEEEEEeCCCCHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHhHHHHhhhccccCCCCcCcEEEEEEECC----
Confidence            468999999999999999999999988776555445678899999999998865422   2235566555555555    


Q ss_pred             EEEEEEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCCC-------CCccCCC
Q psy12423        378 MLHIASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGSC-------PLSFPDP  423 (567)
Q Consensus       378 ~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~~-------~~~~~~p  423 (567)
                      .+++||+||||||++|+|+.++||+||+                           ++|++|+..++       ..++++|
T Consensus       179 ~l~vaNvGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~Gg~v~~g~v~g~l~vTRalGD~~~k~~k~~~~~~vs~eP  258 (365)
T PLN03145        179 SLVVANAGDCRAVLCRRGKAIEMSRDHKPMCSKERKRIEASGGYVYDGYLNGQLNVARALGDWHMEGMKGSDGGPLSAEP  258 (365)
T ss_pred             eEEEEecCCceEEEEcCCeEEEecCCCCCCCHHHHHHHHHcCCceecceECCccccccccccccccccccccCCCcceEE
Confidence            8999999999999999999999999998                           68899986553       2478899


Q ss_pred             ceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCC
Q psy12423        424 HVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG  476 (567)
Q Consensus       424 ~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~  476 (567)
                      ||..++++++|+||||||||||                    +|+++|+.|++.|+.+|+.||||||||+|+.
T Consensus       259 dv~~~~l~~~D~fLILaSDGLwdvls~ee~v~~i~~~l~~~~~p~~aa~~Lv~~Al~rgs~DNITvIVV~l~~  331 (365)
T PLN03145        259 ELMTTQLTEEDEFLIIGCDGIWDVFRSQNAVDFARRRLQEHNDPVMCSKELVDEALKRKSGDNLAVVVVCFQS  331 (365)
T ss_pred             EEEEEECCCCCEEEEEeCCccccCcCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCCEEEEEEEeec
Confidence            9999999999999999999999                    5677899999999999999999999999994

>KOG4194|consensus

Probab=99.95  E-value=8.8e-29  Score=250.88  Aligned_cols=326  Identities=22%  Similarity=0.281  Sum_probs=205.2

Q ss_pred             cEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhc--cCcCchhhhhhccchh----------hcccccccc
Q psy12423          2 QEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRH--PMSPLNNVIEHGIAEE----------REEDFEQDE   68 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~--~L~~L~~l~~~~~~~~----------~~~~~~~~~   68 (567)
                      +.|++++|.|..+. ..|.++++|+.++|..|.++.||.+...  .+..|..-  ++.+..          .++..+...
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~--~N~I~sv~se~L~~l~alrslDLSr  158 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLR--HNLISSVTSEELSALPALRSLDLSR  158 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeee--ccccccccHHHHHhHhhhhhhhhhh
Confidence            45889999988774 5688899999999999988888865532  23333321  222211          011112222


Q ss_pred             CCccccc-CCCCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee-
Q psy12423         69 DGIIVER-REPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV-  141 (567)
Q Consensus        69 ~~l~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~-  141 (567)
                      +.+...+ ..+..-.++++|+|++|.|+...  .|.++.+|..|.|+.|+|+.++   |..+++|+.|+|..|+|.... 
T Consensus       159 N~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~  238 (873)
T KOG4194|consen  159 NLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEG  238 (873)
T ss_pred             chhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehh
Confidence            2222222 22334457888888888888654  6777778888888888888775   556778888888888766442 


Q ss_pred             ---cCCC------------------------CCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCc-ccccCCCcC
Q psy12423        142 ---LNGS------------------------SLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPE  191 (567)
Q Consensus       142 ---~~~~------------------------~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~  191 (567)
                         ..++                        ++++|++..|++..+...+.  +++|+.|+||+|.|..| ++.++..++
T Consensus       239 ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsftqk  318 (873)
T KOG4194|consen  239 LTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQK  318 (873)
T ss_pred             hhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhccc
Confidence               2234                        44445555555544444433  45555555555555544 234444555


Q ss_pred             CcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCC---CchhhhcCCCCCcEE
Q psy12423        192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINI---LPQLFLQNSSKLKVL  267 (567)
Q Consensus       192 L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~---l~~~~l~~l~~L~~L  267 (567)
                      |++|+|++|+|+.++++.|.. +..|++|.|++|.|..+.+ .|..+++|+.|||++|.|+.   -....|..+++|+.|
T Consensus       319 L~~LdLs~N~i~~l~~~sf~~-L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL  397 (873)
T KOG4194|consen  319 LKELDLSSNRITRLDEGSFRV-LSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKL  397 (873)
T ss_pred             ceeEeccccccccCChhHHHH-HHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhhe
Confidence            555555555555555555544 5555555555555555433 45667777777777777662   233456778889999


Q ss_pred             EccCCcCCCCCCC-CcCCccceeecccCCccccC--CcceeeccC-----CCCchhhhHHhhhhHHHHHhhh
Q psy12423        268 NISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNS--DALIGIFDS-----GDNGDIASTLVQSIPRILLEER  331 (567)
Q Consensus       268 ~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~--~~~~~~~dg-----~~~~~is~~l~~~lP~~l~~~~  331 (567)
                      +|.+|+|+.||.. +.++..|..+++..|.....  .||-.+ ..     ......|+|-..|++.|+....
T Consensus       398 ~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSssflCDCql~Wl~qWl~~~~  468 (873)
T KOG4194|consen  398 RLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSSSFLCDCQLKWLAQWLYRRK  468 (873)
T ss_pred             eecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcccceEEeccHHHHHHHHHhcc
Confidence            9999999999975 44888899999988877665  444333 21     3445678888889999987654

>KOG0697|consensus

Probab=99.94  E-value=5.3e-26  Score=210.10  Aligned_cols=171  Identities=18%  Similarity=0.295  Sum_probs=144.8

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhh--------hhhHHHHHHHHHHHHHHhhhccc----ccCceeEEEE
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKE--------TASDYMKYTMLTAHREIKDSLHR----YSLSATLCHL  368 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~--------~~~~~l~~a~l~~n~~i~~~~~~----~~~st~~~~~  368 (567)
                      -.||.+||||.+..++++.+.++-+.+.....+..        ..+.-++..|+++++.++.....    ..++++++.+
T Consensus        53 WSfFAVfDGHAGs~va~~c~~hLlehi~sse~F~~~~k~gsv~~~~~GIrtGFL~iDE~mr~~~~~~~~~drsGsTAVcv  132 (379)
T KOG0697|consen   53 WSFFAVFDGHAGSQVANHCAEHLLEHIISSEEFRGMTKNGSVENVEKGIRTGFLSIDEIMRTLSDISKGSDRSGSTAVCV  132 (379)
T ss_pred             ceEEEEEcCccchHHHHHHHHHHHHHhhhhHHHhhhccCCcHHHHHhhHhhcceeHHHHHhhhhhhhcccccCCceEEEE
Confidence            45899999999999999998887776666555443        34677888999999876653221    1144444446


Q ss_pred             eecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCC------
Q psy12423        369 SLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGS------  415 (567)
Q Consensus       369 ~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~------  415 (567)
                      ++.|.    ++|++|+|||||++||+|...--|.||+                           ++||+||+.+      
T Consensus       133 ~vsp~----h~y~~NcGDSRavl~rng~~~f~TqDHKP~~p~EkeRIqnAGGSVMIqRvNGsLAVSRAlGDydyK~v~~k  208 (379)
T KOG0697|consen  133 FVSPT----HIYIINCGDSRAVLCRNGEVVFSTQDHKPYLPKEKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKNVPGK  208 (379)
T ss_pred             EecCc----eEEEEecCcchhheecCCceEEeccCCCCCChHHHHHHhcCCCeEEEEEecceeeeehhccCcccccCCCC
Confidence            77777    9999999999999999999999999999                           8999999977      


Q ss_pred             ---CCCccCCCceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCcEEEEE
Q psy12423        416 ---CPLSFPDPHVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNLSVLVL  472 (567)
Q Consensus       416 ---~~~~~~~p~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dnit~~vv  472 (567)
                         .+.|+|+|||......+.|+|+|+||||+|                    |...+|..++|.++.+|++||+|+++|
T Consensus       209 gp~eQlVSPEPev~~~~R~eedeFivlACDGIwDVMtneelcefv~sRl~Vt~dL~~vcn~VvDtCLhKGSRDNMsivlv  288 (379)
T KOG0697|consen  209 GPTEQLVSPEPEVYIIERSEEDEFIVLACDGIWDVMTNEELCEFVKSRLEVTSDLEEVCNDVVDTCLHKGSRDNMSIVLV  288 (379)
T ss_pred             CchhcccCCCCceEEeeccccCcEEEEEccchhhhcccHHHHHHHHhhheecccHHHHHHHHHHHHHhccCccCceEEEE
Confidence               566999999999999999999999999999                    788899999999999999999999999


Q ss_pred             EeC
Q psy12423        473 RFQ  475 (567)
Q Consensus       473 ~~~  475 (567)
                      .|.
T Consensus       289 cfp  291 (379)
T KOG0697|consen  289 CFP  291 (379)
T ss_pred             ecC
Confidence            998

>KOG0698|consensus

Probab=99.93  E-value=1.5e-25  Score=227.13  Aligned_cols=174  Identities=25%  Similarity=0.372  Sum_probs=148.3

Q ss_pred             CCcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhh---hhhHHHHHHHH-HHHHHHhhh-cc-cccCceeEEEEeecCc
Q psy12423        300 SDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKE---TASDYMKYTML-TAHREIKDS-LH-RYSLSATLCHLSLHPV  373 (567)
Q Consensus       300 ~~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~---~~~~~l~~a~l-~~n~~i~~~-~~-~~~~st~~~~~~~~~~  373 (567)
                      ..++|++||||++..++.++...+|..+.++.....   ...+++..+|. .++..+... .. ..+++++++.+.....
T Consensus        74 ~~~ffgVfDGHGG~~~A~~~~~~L~~~l~~~~~~~~~~~~~~~a~~~~F~~~~D~~~~~~~~~~~~~gstav~~vi~~~~  153 (330)
T KOG0698|consen   74 DTAFFGVFDGHGGDLAAKFAAKHLHKNLLEQLAFPKDRQDVKDALRRAFLTKTDSEFLEKREDNRSGGSTAVVALIKKGR  153 (330)
T ss_pred             ceEEEEEEeCCCCHHHHHHHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHhhccCCCCCcceeeeeeEecCC
Confidence            368999999999999999999999999988876554   36899999999 599988754 11 2344444444444343


Q ss_pred             cceEEEEEEEecCceEEEEeCC-eeeeCCCCCC-------------------------------CCCCCCCCCCC-CCcc
Q psy12423        374 THRYMLHIASVGEAKAILCRQA-GSLTFTHAPT-------------------------------LSPPVPPQGSC-PLSF  420 (567)
Q Consensus       374 ~~~~~l~~a~~Gdsr~~l~r~~-~~~~lt~dh~-------------------------------~~r~~g~~~~~-~~~~  420 (567)
                          ++++||+||||||++++| .+++||.||+                               ++|++||..++ ++|+
T Consensus       154 ----~l~vaN~GDSRaVl~~~~~~a~~Ls~DHkP~~~~E~~RI~~~GG~v~~~~~~~Rv~G~LavsRa~GD~~~k~~~v~  229 (330)
T KOG0698|consen  154 ----KLYVANVGDSRAVLSRKGGVAVQLSVDHKPDREDERERIEAAGGRVSNWGGVWRVNGVLAVSRAFGDVELKSQGVI  229 (330)
T ss_pred             ----EEEEEEcCCCcEEEecCCCeeeeCCCCCCCCcHHHHHHHHHcCCEEEEcCCcceEeceEEEeeecCCHHhcCCcEe
Confidence                899999999999999876 6999999999                               67889998888 9999


Q ss_pred             CCCceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423        421 PDPHVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGS  477 (567)
Q Consensus       421 ~~p~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~  477 (567)
                      ++|||....++++|+||||||||||                    +++.+|+.+.+.|..+|+.||||||||+|...
T Consensus       230 a~Pei~~~~~~~~deFLiLasDGiwDv~s~qeav~~V~~~~~~~~~~~~a~~~l~~~a~~~~s~DnitvvvV~l~~~  306 (330)
T KOG0698|consen  230 AEPEIQQVKINSDDEFLILASDGIWDVVSNQEAVDLVRDELASISSPLAAAKLLATEALSRGSKDNITVVVVRLKSS  306 (330)
T ss_pred             cCCceEEEEcCCCCcEEEEeCCchhcccChHHHHHHHHHHhhccccHHHHHHHHHHHHhhcCCCCCeEEEEEEecCc
Confidence            9999999999999999999999999                    56778899999999999999999999999943

>PTZ00224 protein phosphatase 2C; Provisional

Probab=99.93  E-value=9.7e-25  Score=222.67  Aligned_cols=166  Identities=25%  Similarity=0.390  Sum_probs=133.0

Q ss_pred             cceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEE
Q psy12423        302 ALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHI  381 (567)
Q Consensus       302 ~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~  381 (567)
                      .+++++|||++..++.++...++.++.+...  ....+.+..++..++.++.......|+++++| +.....    .+++
T Consensus        49 ~lfgVfDGHgG~~~S~~~~~~l~~~l~~~~~--~~~~~~l~~a~~~~d~~i~~~~~~~GsTatv~-lI~~~~----~l~v  121 (381)
T PTZ00224         49 GFFGVFDGHVNDECSQYLARAWPQALEKEPE--PMTDERMEELCLEIDEEWMDSGREGGSTGTFC-VIMKDV----HLQV  121 (381)
T ss_pred             eEEEEEeCCCcHHHHHHHHHHHHHHHHhccc--cccHHHHHHHHHHHHHHHHhcccCCCCeEEEE-EEEECC----EEEE
Confidence            5899999999999999999999987754322  12345688899999988876544443333333 333333    7999


Q ss_pred             EEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCC---------CCCccCCCce
Q psy12423        382 ASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGS---------CPLSFPDPHV  425 (567)
Q Consensus       382 a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~---------~~~~~~~p~v  425 (567)
                      ||+||||+|++|+|+.++||+||+                           ++|++|+..+         .+.++++|||
T Consensus       122 aNVGDSRayl~r~g~~~~LT~DH~~~~~~E~~RI~~~gg~v~~~Rv~G~l~vTRalGd~~~K~~~~~~~~~~~v~~~Pdi  201 (381)
T PTZ00224        122 GNVGDSRVLVCRDGKLVFATEDHKPNNPGERQRIEACGGRVVSNRVDGDLAVSRAFGDRSFKVKGTGDYLEQKVIAVPDV  201 (381)
T ss_pred             EEcccceEEEEECCEEEEcccCCCCCCHHHHhHHHHccCEeccccccCceeeecccCCcccccccccccccCcceeeeEE
Confidence            999999999999999999999999                           5788898643         2356789999


Q ss_pred             EEEEecCCCeEEEEEcCCCC---------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423        426 TEVMLHENDHFLILANKSVS---------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ  475 (567)
Q Consensus       426 ~~~~l~~~d~~lil~sDGl~---------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~  475 (567)
                      ..+.+.++ +||||||||||                     +++.+|+.|++.|+.+|+.||||||||++.
T Consensus       202 ~~~~l~~~-D~llLaSDGL~d~~ls~eEi~~iv~~~l~~~~~~~~aA~~Lv~~A~~rGs~DNITvIvV~~~  271 (381)
T PTZ00224        202 THLTCQSN-DFIILACDGVFEGNFSNEEVVAFVKEQLETCDDLAVVAGRVCDEAIRRGSKDNISCLIVQLK  271 (381)
T ss_pred             EEEECCCC-CEEEEECCCcCcCccCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEee
Confidence            99999875 58899999999                     355689999999999999999999999998

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.92  E-value=1.5e-24  Score=253.45  Aligned_cols=282  Identities=24%  Similarity=0.342  Sum_probs=213.1

Q ss_pred             CcEEEccCCCCC-cCCccCCCCCCCCEEeCcCCCCC-CCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCC
Q psy12423          1 LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNRIS-HLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREP   78 (567)
Q Consensus         1 L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~Ls~n~i~-~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~   78 (567)
                      ++.|+|++|.++ .+|..|..+++|+.|+|++|.+. .+|..++..++.|+.+          ++..+...+.    .+.
T Consensus        71 v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L----------~Ls~n~l~~~----~p~  136 (968)
T PLN00113         71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYL----------NLSNNNFTGS----IPR  136 (968)
T ss_pred             EEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEE----------ECcCCccccc----cCc
Confidence            357999999988 55778999999999999999998 6999888777777766          1112222211    112


Q ss_pred             CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccccee----cCCCCCcE
Q psy12423         79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLV----LNGSSLIS  149 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~  149 (567)
                      ..+++|++|+|++|.+.+..  .++++++|++|++++|.+...   .++.+++|++|++++|.+....    ..+.+|+.
T Consensus       137 ~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  216 (968)
T PLN00113        137 GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW  216 (968)
T ss_pred             cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccE
Confidence            45778888999888887544  578888888888888887653   3677888888888888876543    35678888


Q ss_pred             EEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCCC-CCChhhhhccCCCccEEECCCC
Q psy12423        150 VIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFN  225 (567)
Q Consensus       150 L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N  225 (567)
                      |++++|.+.+..+..+  +++|++|++++|.+. .+|..+..+++|++|++++|.+. .+|..+..  +++|++|+|++|
T Consensus       217 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~--l~~L~~L~Ls~n  294 (968)
T PLN00113        217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFS--LQKLISLDLSDN  294 (968)
T ss_pred             EECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhh--ccCcCEEECcCC
Confidence            8888888876665554  788888888888887 56778888888888888888887 45555543  788888888888


Q ss_pred             CCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCccc
Q psy12423        226 RLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFC  298 (567)
Q Consensus       226 ~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~  298 (567)
                      .+.+ +|..+..+++|+.|++++|.++...+..+..+++|+.|++++|.++ .+|..+..+..|..+++..|.+.
T Consensus       295 ~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~  369 (968)
T PLN00113        295 SLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT  369 (968)
T ss_pred             eeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE
Confidence            8874 6777788888888888888887655556678888888888888887 66766666677777766666554

>PF00481 PP2C: Protein phosphatase 2C; InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg

Probab=99.91  E-value=1.3e-24  Score=214.07  Aligned_cols=163  Identities=25%  Similarity=0.415  Sum_probs=130.0

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhh--hhhHHHHHHHHH-HHHHHhhhc---ccccCceeEEEEeecCcc
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKE--TASDYMKYTMLT-AHREIKDSL---HRYSLSATLCHLSLHPVT  374 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~--~~~~~l~~a~l~-~n~~i~~~~---~~~~~st~~~~~~~~~~~  374 (567)
                      ..+|+++|||++..++.+....+|..+.+......  ...+++..+|.. ++..+....   ....++++++++.+... 
T Consensus        33 ~~l~~V~DGhgG~~~a~~~~~~l~~~l~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GsTa~v~li~~~-  111 (254)
T PF00481_consen   33 VSLFGVFDGHGGSEAAEYASQNLPEFLKENLSFNDGNDIEEALRQAFLAFTDESLYSDSENNESSKSGSTATVALIDGN-  111 (254)
T ss_dssp             EEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHTHTTSEEEEEEEEEETT-
T ss_pred             cEEEEEecCCCChhhHHHHHHHHHHHHHhhcccccccchhhcccceeeecccccccccccccccccccccccccccccc-
Confidence            77899999999999999999999988777766544  368999999999 777776521   23444555555555555 


Q ss_pred             ceEEEEEEEecCceEEEEeCCeee-eCCCCCC----------------------------CCCCCCCCCCCC----CccC
Q psy12423        375 HRYMLHIASVGEAKAILCRQAGSL-TFTHAPT----------------------------LSPPVPPQGSCP----LSFP  421 (567)
Q Consensus       375 ~~~~l~~a~~Gdsr~~l~r~~~~~-~lt~dh~----------------------------~~r~~g~~~~~~----~~~~  421 (567)
                         ++++||+||||||+++.+... +||+||+                            ++|++||..+++    +|++
T Consensus       112 ---~l~vanvGDSravl~~~~~~~~~Lt~dH~~~~~~E~~RI~~~gg~v~~~~rv~g~l~~sRalGd~~~k~~~~~~v~~  188 (254)
T PF00481_consen  112 ---KLYVANVGDSRAVLCRNGGIIKQLTRDHKPSNPDERERIRKAGGRVSENGRVNGVLAVSRALGDFDLKPPGKPGVIA  188 (254)
T ss_dssp             ---EEEEEEESS-EEEEEETTEEEEESS---STTSHHHHHHHHHTT-GEEETEEETTTBSSSB-EE-GGGTTCTSSSSB-
T ss_pred             ---eeEEEeeeeeeeeeeeccccccccccccccchhhccceeeccccccccchhhhhccccccccccccccccccceeee
Confidence               899999999999999999988 9999998                            689999998876    9999


Q ss_pred             CCceEEEEecCCCeEEEEEcCCCC----------------C----HHHHHHHHHHHHHHcCCCCCc
Q psy12423        422 DPHVTEVMLHENDHFLILANKSVS----------------E----PVLAAKRIQDLAQSYGSEDNL  467 (567)
Q Consensus       422 ~p~v~~~~l~~~d~~lil~sDGl~----------------~----~~~~a~~l~~~a~~~g~~dni  467 (567)
                      +|+|..+.++++|+||||||||||                +    |+.+|++|++.|+++|+.|||
T Consensus       189 ~P~i~~~~l~~~d~flvlaSDGlwd~l~~~ei~~~v~~~~~~~~~~~~~a~~L~~~A~~~gs~DNi  254 (254)
T PF00481_consen  189 EPDISEVDLTPDDEFLVLASDGLWDVLSNEEIVDIVRESLNSGRSPQEAAEKLVDEAIARGSKDNI  254 (254)
T ss_dssp             --EEEEEEEBTTEEEEEEE-HHHHTTSHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTHHSHE
T ss_pred             ecccccccccccceEEEEEcccccccCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCC
Confidence            999999999999999999999999                2    889999999999999999997

pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 2I0O_A 2POP_C 2POM_A 2J4O_A 2I44_B 3MQ3_A 3N3C_A 2PNQ_B 2P8E_A 2IQ1_A ....

>COG0631 PTC1 Serine/threonine protein phosphatase [Signal transduction mechanisms]

Probab=99.91  E-value=1.3e-23  Score=206.08  Aligned_cols=166  Identities=22%  Similarity=0.305  Sum_probs=136.1

Q ss_pred             cceeeccCCCCchhhhHHhhhhHHHHHhhhhh----hhh--hhHHHHHHHHHHHHHHhhhcc----cccCceeEEEEeec
Q psy12423        302 ALIGIFDSGDNGDIASTLVQSIPRILLEERTV----KET--ASDYMKYTMLTAHREIKDSLH----RYSLSATLCHLSLH  371 (567)
Q Consensus       302 ~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l----~~~--~~~~l~~a~l~~n~~i~~~~~----~~~~st~~~~~~~~  371 (567)
                      .++.++||+++........+.+...+.+....    ...  ..+++.+++..++..+.....    ..++++|++.+...
T Consensus        39 ~l~~V~DG~GGh~~ge~aS~~~v~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~n~~i~~~~~~~~~~~~mgtTl~~~~~~  118 (262)
T COG0631          39 LLFAVADGMGGHAAGEVASKLAVEALARLFDETNFNSLNESLEELLKEAILKANEAIAEEGQLNEDVRGMGTTLVLLLIR  118 (262)
T ss_pred             eEEEEEeCccchhHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHHHHHHhhhcccccCCCceeEEEEEEE
Confidence            48899999988777776666665555544221    111  478999999999998877643    34566666666666


Q ss_pred             CccceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEE
Q psy12423        372 PVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTE  427 (567)
Q Consensus       372 ~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~  427 (567)
                      ..    ++++||+||||+|++|+|+.+|+|.||+                        ++|++|+...     +.|++..
T Consensus       119 ~~----~l~~a~vGDSR~yl~~~~~~~~lT~DH~~~~~~~~~~~~~~~~~~~~~~~~~ltralG~~~~-----~~p~~~~  189 (262)
T COG0631         119 GN----KLYVANVGDSRAYLLRDGELKQLTEDHSLVNRLEQRGIITPEEARSHPRRNALTRALGDFDL-----LEPDITE  189 (262)
T ss_pred             CC----eEEEEEccCCeEEEEcCCceEEeccCCcHHHHHHHhcCCCHHHHHhCccchhhhhhcCCCcc-----cceeEEE
Confidence            55    8999999999999999999999999999                        5788897663     7899999


Q ss_pred             EEecCCCeEEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423        428 VMLHENDHFLILANKSVS----------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGS  477 (567)
Q Consensus       428 ~~l~~~d~~lil~sDGl~----------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~  477 (567)
                      .++.++ +|+||||||||                +|+.+|++|++.|+.+|+.|||||++|++...
T Consensus       190 ~~~~~~-d~llL~SDGl~d~v~~~~i~~il~~~~~~~~~~~~li~~a~~~g~~DNiT~ilv~~~~~  254 (262)
T COG0631         190 LELEPG-DFLLLCSDGLWDVVSDDEIVDILKNSETPQEAADKLIELALEGGGPDNITVVLVRLNGE  254 (262)
T ss_pred             EEcCCC-CEEEEECCCCccCcCHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCCCceEEEEEEeecc
Confidence            999997 88889999999                78899999999999999999999999998844

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.91  E-value=6.3e-24  Score=248.15  Aligned_cols=283  Identities=25%  Similarity=0.280  Sum_probs=137.8

Q ss_pred             CcEEEccCCCCC-cCCccCCCCCCCCEEeCcCCCCCC-CChhhhccCcCchhhhhhccchhhccccccccCCcccccCCC
Q psy12423          1 LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNRISH-LPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREP   78 (567)
Q Consensus         1 L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~   78 (567)
                      |++|+|++|.++ .+|..++++++|++|+|++|.+.. +|..+ ..++.|+.+.          +..+...+  ..+..+
T Consensus       142 L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~-~~l~~L~~L~----------L~~n~l~~--~~p~~l  208 (968)
T PLN00113        142 LETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSL-TNLTSLEFLT----------LASNQLVG--QIPREL  208 (968)
T ss_pred             CCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhh-hhCcCCCeee----------ccCCCCcC--cCChHH
Confidence            455566666555 456566666666666666666653 44333 3444444430          00111110  112223


Q ss_pred             CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCcccc--------------
Q psy12423         79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKT--------------  139 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~--------------  139 (567)
                      ..+++|++|+|++|.+.+..  .++.+++|++|++++|.+...   .++.+++|++|++++|.+.+              
T Consensus       209 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  288 (968)
T PLN00113        209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLIS  288 (968)
T ss_pred             cCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCE
Confidence            34445555555555444322  344444555555555544321   13344444444444444432              


Q ss_pred             ----------ee----cCCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCC
Q psy12423        140 ----------LV----LNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRI  202 (567)
Q Consensus       140 ----------l~----~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l  202 (567)
                                ..    ..+++|+.|++++|.+++..+..+  +++|+.|++++|.+. .+|.++..+++|+.|++++|.+
T Consensus       289 L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l  368 (968)
T PLN00113        289 LDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNL  368 (968)
T ss_pred             EECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCee
Confidence                      21    123344444444444443333222  444444444444444 3444444445555555555544


Q ss_pred             C-CCChhhhhccCCCccEEECCCCCCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCC
Q psy12423        203 T-QLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPS  279 (567)
Q Consensus       203 ~-~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~  279 (567)
                      + .+|..+..  +++|+.|++++|.+.+ +|..+..+++|+.|++++|.+++..+..|..++.|+.|++++|.++ .+|.
T Consensus       369 ~~~~p~~~~~--~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~  446 (968)
T PLN00113        369 TGEIPEGLCS--SGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS  446 (968)
T ss_pred             EeeCChhHhC--cCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh
Confidence            4 23332221  4455555555555543 4555566666666666666666444444566677777777777766 3444


Q ss_pred             CCcCCccceeecccCCccc
Q psy12423        280 LQKGFYLLNISQLRLPGFC  298 (567)
Q Consensus       280 ~~~~~~~L~~~~l~~~~~~  298 (567)
                      ....+..|..+++..|.+.
T Consensus       447 ~~~~l~~L~~L~L~~n~~~  465 (968)
T PLN00113        447 RKWDMPSLQMLSLARNKFF  465 (968)
T ss_pred             hhccCCCCcEEECcCceee
Confidence            4445666666666666554

>KOG0444|consensus

Probab=99.91  E-value=1.9e-26  Score=235.30  Aligned_cols=262  Identities=23%  Similarity=0.298  Sum_probs=118.5

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |+.||||+|+++++|..+..-+++-.|+||+|+|.+||..+|.+|..|-.+             +.+.+.+..++.....
T Consensus       105 Lt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfL-------------DLS~NrLe~LPPQ~RR  171 (1255)
T KOG0444|consen  105 LTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFL-------------DLSNNRLEMLPPQIRR  171 (1255)
T ss_pred             ceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhh-------------ccccchhhhcCHHHHH
Confidence            345555555555555555555555555555555555555555444433332             1112222222222233


Q ss_pred             CCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC--C--CCcccccCcEEEcccCccccee---cCCCCCcEEE
Q psy12423         81 KGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES--L--DLGALNRLESIKCSRNQLKTLV---LNGSSLISVI  151 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~--~--~~~~l~~L~~L~ls~n~l~~l~---~~~~~L~~L~  151 (567)
                      +.+|++|+|++|.+....  .+..+++|+.|.+++.+-+-  +  ++..+.+|..+++|.|++..++   ..+.+|+.|+
T Consensus       172 L~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLN  251 (1255)
T KOG0444|consen  172 LSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLN  251 (1255)
T ss_pred             HhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheec
Confidence            344444444444433211  23333344444444433221  1  1334444445555555444444   2234444445


Q ss_pred             cCCCccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCC--CCChhhhhccCCCccEEECCCCCCC
Q psy12423        152 AGNNKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT--QLPSQFFCRELGKLHTLQLSFNRLT  228 (567)
Q Consensus       152 l~~n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~Ls~N~l~  228 (567)
                      +++|+|+.+....- ..+|++|+||.|+++.+|+.+..++.|+.|.+.+|+++  .||.++..  +.+|+.+..++|++.
T Consensus       252 LS~N~iteL~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGK--L~~Levf~aanN~LE  329 (1255)
T KOG0444|consen  252 LSGNKITELNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGK--LIQLEVFHAANNKLE  329 (1255)
T ss_pred             cCcCceeeeeccHHHHhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhh--hhhhHHHHhhccccc
Confidence            55554444433222 33444455555555555544444455555555444443  44444433  444444444444444


Q ss_pred             CCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423        229 SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP  278 (567)
Q Consensus       229 ~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip  278 (567)
                      -+|+.+..|..|+.|.|+.|++-.+|..+ .-++.|+.||+..|+=-..|
T Consensus       330 lVPEglcRC~kL~kL~L~~NrLiTLPeaI-HlL~~l~vLDlreNpnLVMP  378 (1255)
T KOG0444|consen  330 LVPEGLCRCVKLQKLKLDHNRLITLPEAI-HLLPDLKVLDLRENPNLVMP  378 (1255)
T ss_pred             cCchhhhhhHHHHHhcccccceeechhhh-hhcCCcceeeccCCcCccCC
Confidence            44444444445555555555444444433 23444455555544433333

>KOG0444|consensus

Probab=99.91  E-value=1.2e-26  Score=236.64  Aligned_cols=281  Identities=27%  Similarity=0.306  Sum_probs=155.4

Q ss_pred             cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK   81 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l   81 (567)
                      +-|.|...++..+|+.++.|.+|++|.+++|++.++-..+. .|+.|+.+.        ....+....|+|   ..+..+
T Consensus        35 ~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~~vhGELs-~Lp~LRsv~--------~R~N~LKnsGiP---~diF~l  102 (1255)
T KOG0444|consen   35 TWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLISVHGELS-DLPRLRSVI--------VRDNNLKNSGIP---TDIFRL  102 (1255)
T ss_pred             eEEEechhhhhhChHHHHHHhhhhhhhhhhhhhHhhhhhhc-cchhhHHHh--------hhccccccCCCC---chhccc
Confidence            44666666777777777777777777777777665543332 344444331        011111222222   334455


Q ss_pred             CCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecC---CCCCcEEEcCC
Q psy12423         82 GELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLN---GSSLISVIAGN  154 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~---~~~L~~L~l~~  154 (567)
                      ..|+.||||+|+++..+ .+..-+++-.|+|++|+|..++   +.++..|-.|+||+|.+..+++.   +..|++|.+++
T Consensus       103 ~dLt~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~  182 (1255)
T KOG0444|consen  103 KDLTILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSN  182 (1255)
T ss_pred             ccceeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCC
Confidence            56666666666666554 4444555666666666666554   33444555555555555554432   23334444444


Q ss_pred             Ccccc--------------------------ccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCCh
Q psy12423        155 NKLQS--------------------------LIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPS  207 (567)
Q Consensus       155 n~l~~--------------------------~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~  207 (567)
                      |.+..                          ++...- +.+|..+|||.|.+..+|+.+..+++|+.|+|++|+|+.+..
T Consensus       183 NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPecly~l~~LrrLNLS~N~iteL~~  262 (1255)
T KOG0444|consen  183 NPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLPIVPECLYKLRNLRRLNLSGNKITELNM  262 (1255)
T ss_pred             ChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCCcchHHHhhhhhhheeccCcCceeeeec
Confidence            33211                          111111 456666666666666666666666666666666666665554


Q ss_pred             hhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCC--CCchhh----------------------hcCCCC
Q psy12423        208 QFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN--ILPQLF----------------------LQNSSK  263 (567)
Q Consensus       208 ~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~--~l~~~~----------------------l~~l~~  263 (567)
                      ....  +.+|+.|+||.|+++.+|..+..++.|+.|++.+|+++  +||.++                      +..|..
T Consensus       263 ~~~~--W~~lEtLNlSrNQLt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LElVPEglcRC~k  340 (1255)
T KOG0444|consen  263 TEGE--WENLETLNLSRNQLTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLELVPEGLCRCVK  340 (1255)
T ss_pred             cHHH--HhhhhhhccccchhccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccccCchhhhhhHH
Confidence            4433  45666666666666666666655666666655555544  444443                      135566


Q ss_pred             CcEEEccCCcCCCCCCCCcCCccceeecccCCc
Q psy12423        264 LKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG  296 (567)
Q Consensus       264 L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~  296 (567)
                      |+.|.|+.|++-++|..+.-+..|.+++++.|+
T Consensus       341 L~kL~L~~NrLiTLPeaIHlL~~l~vLDlreNp  373 (1255)
T KOG0444|consen  341 LQKLKLDHNRLITLPEAIHLLPDLKVLDLRENP  373 (1255)
T ss_pred             HHHhcccccceeechhhhhhcCCcceeeccCCc
Confidence            666666666666666666666666666666553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.90  E-value=3.8e-23  Score=226.93  Aligned_cols=257  Identities=30%  Similarity=0.325  Sum_probs=192.2

Q ss_pred             cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK   81 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l   81 (567)
                      ..|+|+++.|+++|+.+.  ++|+.|++++|+|+.+|... .+|+.|..             ..+....++      ...
T Consensus       204 ~~LdLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~lp-~~Lk~LdL-------------s~N~LtsLP------~lp  261 (788)
T PRK15387        204 AVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPALP-PELRTLEV-------------SGNQLTSLP------VLP  261 (788)
T ss_pred             cEEEcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCCCC-CCCcEEEe-------------cCCccCccc------Ccc
Confidence            468999999999998775  48999999999999988632 23333322             123333322      224


Q ss_pred             CCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccccc
Q psy12423         82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLI  161 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~  161 (567)
                      ++|+.|+|++|.++....  .+.+|+.|++++|+++.++. .+++|+.|++++|++..++....+|+.|.+++|.++.++
T Consensus       262 ~sL~~L~Ls~N~L~~Lp~--lp~~L~~L~Ls~N~Lt~LP~-~p~~L~~LdLS~N~L~~Lp~lp~~L~~L~Ls~N~L~~LP  338 (788)
T PRK15387        262 PGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSLP  338 (788)
T ss_pred             cccceeeccCCchhhhhh--chhhcCEEECcCCccccccc-cccccceeECCCCccccCCCCcccccccccccCcccccc
Confidence            588888888888876543  23578888888888887753 357788889988888887665567888888888888765


Q ss_pred             CCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCc
Q psy12423        162 VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLK  241 (567)
Q Consensus       162 ~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  241 (567)
                      .  ++.+|+.|+|++|+|+.+|..   ..+|+.|++++|.|+.+|..     +.+|+.|+|++|.|+.+|..+   ++|+
T Consensus       339 ~--lp~~Lq~LdLS~N~Ls~LP~l---p~~L~~L~Ls~N~L~~LP~l-----~~~L~~LdLs~N~Lt~LP~l~---s~L~  405 (788)
T PRK15387        339 T--LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTSLPVLP---SELK  405 (788)
T ss_pred             c--cccccceEecCCCccCCCCCC---CcccceehhhccccccCccc-----ccccceEEecCCcccCCCCcc---cCCC
Confidence            3  346788899998888888763   35678888888888887753     457888888888888887643   5788


Q ss_pred             EEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        242 YLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       242 ~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      .|++++|.|+.+|..    ..+|+.|++++|+|+.||..+..+..|...++..|.+.+.
T Consensus       406 ~LdLS~N~LssIP~l----~~~L~~L~Ls~NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~  460 (788)
T PRK15387        406 ELMVSGNRLTSLPML----PSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSER  460 (788)
T ss_pred             EEEccCCcCCCCCcc----hhhhhhhhhccCcccccChHHhhccCCCeEECCCCCCCch
Confidence            888888888888752    3467888888888888888877788888888888877654

>KOG0472|consensus

Probab=99.89  E-value=1.3e-25  Score=219.10  Aligned_cols=282  Identities=25%  Similarity=0.314  Sum_probs=206.8

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc-CCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER-REPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~~   79 (567)
                      |++||.-.|.++.+|+.++.+.+|+.|+|..|+|..+|.+  .+...|+.+             ....+.+...+ ...+
T Consensus       185 L~~ld~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef--~gcs~L~El-------------h~g~N~i~~lpae~~~  249 (565)
T KOG0472|consen  185 LKHLDCNSNLLETLPPELGGLESLELLYLRRNKIRFLPEF--PGCSLLKEL-------------HVGENQIEMLPAEHLK  249 (565)
T ss_pred             HHhcccchhhhhcCChhhcchhhhHHHHhhhcccccCCCC--CccHHHHHH-------------HhcccHHHhhHHHHhc
Confidence            4556666677777777777777777777777777777622  234444443             22222222222 3345


Q ss_pred             CCCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceec--------------
Q psy12423         80 VKGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVL--------------  142 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~--------------  142 (567)
                      .+++|..|||..|+++..+ .+..+.+|+.||+++|.|++++  ++++ .|+.|.+.+|.+..+..              
T Consensus       250 ~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyL  328 (565)
T KOG0472|consen  250 HLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYL  328 (565)
T ss_pred             ccccceeeeccccccccCchHHHHhhhhhhhcccCCccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHH
Confidence            7889999999999999877 7788899999999999999875  7888 89999999987653210              


Q ss_pred             -------------------------------CCCCCcEEEcCCCccccccCCCC----CCcccEEecccCCC--------
Q psy12423        143 -------------------------------NGSSLISVIAGNNKLQSLIVSPR----PARLQHLDISYNEL--------  179 (567)
Q Consensus       143 -------------------------------~~~~L~~L~l~~n~l~~~~~~~~----~~~L~~L~Ls~n~l--------  179 (567)
                                                     ..-+.+.|+++.-+++.++...|    -.-....+++.|++        
T Consensus       329 rs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~  408 (565)
T KOG0472|consen  329 RSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLV  408 (565)
T ss_pred             HHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhH
Confidence                                           01234455555555555554443    11244455555544        


Q ss_pred             ----------------CCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEE
Q psy12423        180 ----------------ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL  243 (567)
Q Consensus       180 ----------------~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  243 (567)
                                      .-+|..++.+++|..|+|++|-+.++|.+++.  +..|+.|++++|.+..+|.++..+..|+.+
T Consensus       409 ~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln~LP~e~~~--lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtl  486 (565)
T KOG0472|consen  409 ELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLNDLPEEMGS--LVRLQTLNLSFNRFRMLPECLYELQTLETL  486 (565)
T ss_pred             HHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhhhcchhhhh--hhhhheecccccccccchHHHhhHHHHHHH
Confidence                            44444566778888999999999999988886  777999999999888888888888888888


Q ss_pred             EccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      -.++|++..+++.-+.++.+|..|||.+|.+..||+..+++.+|.-+.+.+|+|...
T Consensus       487 las~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr~P  543 (565)
T KOG0472|consen  487 LASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPILGNMTNLRHLELDGNPFRQP  543 (565)
T ss_pred             HhccccccccChHHhhhhhhcceeccCCCchhhCChhhccccceeEEEecCCccCCC
Confidence            888899999988866899999999999999999999999999999999999999844

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.87  E-value=6.9e-22  Score=217.05  Aligned_cols=235  Identities=29%  Similarity=0.338  Sum_probs=191.5

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |+.|++++|+|+.+|..   +++|++|+|++|+|+.+|.. +.+|+.|...             .+....++      ..
T Consensus       224 L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l-p~sL~~L~Ls-------------~N~L~~Lp------~l  280 (788)
T PRK15387        224 ITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL-PPGLLELSIF-------------SNPLTHLP------AL  280 (788)
T ss_pred             CCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc-ccccceeecc-------------CCchhhhh------hc
Confidence            57899999999999963   57999999999999999854 3344444322             22222222      12


Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL  160 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~  160 (567)
                      +.+|+.|++++|+++..+.  .+++|+.|++++|+++.++. ...+|+.|++++|+++.++....+|+.|++++|+++.+
T Consensus       281 p~~L~~L~Ls~N~Lt~LP~--~p~~L~~LdLS~N~L~~Lp~-lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~L  357 (788)
T PRK15387        281 PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLASL  357 (788)
T ss_pred             hhhcCEEECcCCccccccc--cccccceeECCCCccccCCC-CcccccccccccCccccccccccccceEecCCCccCCC
Confidence            3578999999999987653  35789999999999998753 34578899999999998876556899999999999987


Q ss_pred             cCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC
Q psy12423        161 IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL  240 (567)
Q Consensus       161 ~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  240 (567)
                      +.  .+.+|+.|++++|.|+.+|..   ..+|+.|++++|.|+.+|..     +++|+.|++++|.|+.+|..+   .+|
T Consensus       358 P~--lp~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt~LP~l-----~s~L~~LdLS~N~LssIP~l~---~~L  424 (788)
T PRK15387        358 PT--LPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL-----PSELKELMVSGNRLTSLPMLP---SGL  424 (788)
T ss_pred             CC--CCcccceehhhccccccCccc---ccccceEEecCCcccCCCCc-----ccCCCEEEccCCcCCCCCcch---hhh
Confidence            65  357899999999999999864   35799999999999998863     568999999999999998743   578


Q ss_pred             cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      +.|++++|+|+.+|..+ .++++|+.|+|++|+|+
T Consensus       425 ~~L~Ls~NqLt~LP~sl-~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        425 LSLSVYRNQLTRLPESL-IHLSSETTVNLEGNPLS  458 (788)
T ss_pred             hhhhhccCcccccChHH-hhccCCCeEECCCCCCC
Confidence            89999999999999875 68999999999999998

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.87  E-value=7.4e-22  Score=218.09  Aligned_cols=244  Identities=24%  Similarity=0.298  Sum_probs=168.5

Q ss_pred             cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK   81 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l   81 (567)
                      ..|++++++++.+|..+.  ++|+.|+|++|+|+.+|..++.+|+.|...             .+....++.     ...
T Consensus       181 ~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~~nL~~L~Ls-------------~N~LtsLP~-----~l~  240 (754)
T PRK15370        181 TELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQGNIKTLYAN-------------SNQLTSIPA-----TLP  240 (754)
T ss_pred             eEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhccCCCEEECC-------------CCccccCCh-----hhh
Confidence            578999999999997664  589999999999999998776555544332             222222221     112


Q ss_pred             CCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCC-CCCcEEEcCCCccccc
Q psy12423         82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSL  160 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~-~~L~~L~l~~n~l~~~  160 (567)
                      .+|+.|+|++|++...+. .-..+|+.|++++|+++.++-.-.++|+.|++++|+|+.++..+ .+|+.|++++|.++.+
T Consensus       241 ~~L~~L~Ls~N~L~~LP~-~l~s~L~~L~Ls~N~L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~L  319 (754)
T PRK15370        241 DTIQEMELSINRITELPE-RLPSALQSLDLFHNKISCLPENLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTAL  319 (754)
T ss_pred             ccccEEECcCCccCcCCh-hHhCCCCEEECcCCccCccccccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccC
Confidence            467788888887775441 11246788888888877765433457888888888877766433 3577777888877765


Q ss_pred             cCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC
Q psy12423        161 IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL  240 (567)
Q Consensus       161 ~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  240 (567)
                      +. ..+++|+.|++++|.++.+|..+.  ++|+.|++++|+|+.+|..+    +++|+.|+|++|+|+.+|..+.  ..|
T Consensus       320 P~-~l~~sL~~L~Ls~N~Lt~LP~~l~--~sL~~L~Ls~N~L~~LP~~l----p~~L~~LdLs~N~Lt~LP~~l~--~sL  390 (754)
T PRK15370        320 PE-TLPPGLKTLEAGENALTSLPASLP--PELQVLDVSKNQITVLPETL----PPTITTLDVSRNALTNLPENLP--AAL  390 (754)
T ss_pred             Cc-cccccceeccccCCccccCChhhc--CcccEEECCCCCCCcCChhh----cCCcCEEECCCCcCCCCCHhHH--HHH
Confidence            43 235678888888888877776553  67888888888887777654    4578888888888887776553  367


Q ss_pred             cEEEccCCCCCCCchhh---hcCCCCCcEEEccCCcCC
Q psy12423        241 KYLFLQSNSINILPQLF---LQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       241 ~~L~Ls~N~l~~l~~~~---l~~l~~L~~L~Ls~N~l~  275 (567)
                      +.|++++|+|+.+|..+   +..++.+..|++.+|+|+
T Consensus       391 ~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        391 QIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             HHHhhccCCcccCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            77888888887776542   334567778888888776

>PRK14559 putative protein serine/threonine phosphatase; Provisional

Probab=99.86  E-value=1.1e-20  Score=203.40  Aligned_cols=167  Identities=17%  Similarity=0.292  Sum_probs=124.9

Q ss_pred             CcceeeccCCCCch---h-hhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhc------ccccCceeEEEEee
Q psy12423        301 DALIGIFDSGDNGD---I-ASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSL------HRYSLSATLCHLSL  370 (567)
Q Consensus       301 ~~~~~~~dg~~~~~---i-s~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~------~~~~~st~~~~~~~  370 (567)
                      ..++.++||++|..   + +......++..+.+.........+++..++..+|..+....      ...+++||++.+.+
T Consensus       414 ~~L~aVaDGmGGh~~GevAS~lAv~~L~~~~~~~~~~~~~~~~~L~~ai~~AN~~I~~~~~~~~~~~~~~MGTTlv~alI  493 (645)
T PRK14559        414 RGLYILCDGMGGHAAGEVASALAVETLQQYFQQHWQDELPDEETIREAIYLANEAIYDLNQQNARSGSGRMGTTLVMALV  493 (645)
T ss_pred             ceEEEEEeCCCCchhHHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHHHHHhhhcccccCCCCCceeeeEEE
Confidence            45788999987654   3 33555666666554322111236778999999999886532      12246666666666


Q ss_pred             cCccceEEEEEEEecCceEEEE-eCCeeeeCCCCCC-----------------------CCCCCCCCCCCCCccCCCceE
Q psy12423        371 HPVTHRYMLHIASVGEAKAILC-RQAGSLTFTHAPT-----------------------LSPPVPPQGSCPLSFPDPHVT  426 (567)
Q Consensus       371 ~~~~~~~~l~~a~~Gdsr~~l~-r~~~~~~lt~dh~-----------------------~~r~~g~~~~~~~~~~~p~v~  426 (567)
                      ...    .+++||+||||+|++ |+|+.++||+||+                       ++|++|+...   ...+|++.
T Consensus       494 ~~~----~l~ianVGDSRaYli~r~g~l~QLT~DHs~~~~lv~~Gi~~~~a~~~p~~~~LTrALG~~~~---~~l~Pdi~  566 (645)
T PRK14559        494 QDT----QVAVAHVGDSRLYRVTRKGGLEQLTVDHEVGQREIQRGVEPQIAYARPDAYQLTQALGPRDN---SAIQPDIQ  566 (645)
T ss_pred             ECC----EEEEEEecCceEEEEecCCeEEEeCCCCCHHHHHHHhCCCHHHHhcCcccceeeeccCCCCC---CcccceEE
Confidence            655    899999999999988 5678999999998                       4567775432   23579999


Q ss_pred             EEEecCCCeEEEEEcCCCC---------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423        427 EVMLHENDHFLILANKSVS---------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ  475 (567)
Q Consensus       427 ~~~l~~~d~~lil~sDGl~---------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~  475 (567)
                      .+.+.++ ++|||||||||                     ++.++|++|++.|+.+|++||||||||+++
T Consensus       567 ~~~L~~g-D~lLLCSDGL~D~~~ve~~~~~~l~~il~~~~~l~~aa~~Li~~Al~~gg~DNITvIvV~l~  635 (645)
T PRK14559        567 FLEIEED-TLLLLCSDGLSDNDLLETHWQTHLLPLLSSSANLDQGLNKLIDLANQYNGHDNITAILVRLK  635 (645)
T ss_pred             EEEcCCC-CEEEEECCCCCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCcEEEEEEEec
Confidence            9999875 67779999999                     345689999999999999999999999998

>KOG0472|consensus

Probab=99.85  E-value=4e-24  Score=208.74  Aligned_cols=261  Identities=26%  Similarity=0.347  Sum_probs=170.3

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |+.|.+++|.+..+.+.+.++..|.+|++.+|++..+|+.+.. +..+..+             +...+.+...+.....
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~~lp~aig~-l~~l~~l-------------~vs~n~ls~lp~~i~s  112 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLSQLPAAIGE-LEALKSL-------------NVSHNKLSELPEQIGS  112 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhhhCCHHHHH-HHHHHHh-------------hcccchHhhccHHHhh
Confidence            4568899999999888899999999999999999999998864 2222222             2233333333444455


Q ss_pred             CCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceec---CCCCCcEEEcCC
Q psy12423         81 KGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVL---NGSSLISVIAGN  154 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~---~~~~L~~L~l~~  154 (567)
                      +.+|..|++++|.+.... .++.+-.|+.|+..+|++..++  +..+.+|..|++.+|++..++.   +++.|++|++..
T Consensus       113 ~~~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~  192 (565)
T KOG0472|consen  113 LISLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNS  192 (565)
T ss_pred             hhhhhhhhccccceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccch
Confidence            566666666666666544 5556666666666666666653  4556666666666666666552   356666666666


Q ss_pred             CccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh
Q psy12423        155 NKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL  233 (567)
Q Consensus       155 n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  233 (567)
                      |-++.+++... +.+|.-|+|..|+|..+| .|.++..|++|+++.|.|..+|...... +++|..|||..|+++++|..
T Consensus       193 N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~-L~~l~vLDLRdNklke~Pde  270 (565)
T KOG0472|consen  193 NLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIEMLPAEHLKH-LNSLLVLDLRDNKLKEVPDE  270 (565)
T ss_pred             hhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHHhhHHHHhcc-cccceeeeccccccccCchH
Confidence            66666665544 666666666666666666 4666666666666666666666666544 66666666666666666666


Q ss_pred             hhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        234 IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       234 ~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      +.-+++|..||+++|.|+.+|... +++ .|+.|-+.+|++.+|-.
T Consensus       271 ~clLrsL~rLDlSNN~is~Lp~sL-gnl-hL~~L~leGNPlrTiRr  314 (565)
T KOG0472|consen  271 ICLLRSLERLDLSNNDISSLPYSL-GNL-HLKFLALEGNPLRTIRR  314 (565)
T ss_pred             HHHhhhhhhhcccCCccccCCccc-ccc-eeeehhhcCCchHHHHH
Confidence            666666666666666666666653 555 66666666666654443

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.85  E-value=5.6e-21  Score=211.15  Aligned_cols=223  Identities=25%  Similarity=0.336  Sum_probs=178.5

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |+.|+|++|+|+.+|..+.  ++|++|+|++|+|+++|..++..|+.|...             .+....++   ..  .
T Consensus       201 L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~~~L~~L~Ls-------------~N~L~~LP---~~--l  260 (754)
T PRK15370        201 ITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLPDTIQEMELS-------------INRITELP---ER--L  260 (754)
T ss_pred             CcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhhccccEEECc-------------CCccCcCC---hh--H
Confidence            5789999999999997654  589999999999999998776655554432             22222222   11  2


Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceec-CCCCCcEEEcCCCcccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL-NGSSLISVIAGNNKLQS  159 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~-~~~~L~~L~l~~n~l~~  159 (567)
                      ..+|+.|++++|+++..+. .-.++|+.|++++|+++.++..-..+|+.|++++|.++.++. ..++|+.|++++|.++.
T Consensus       261 ~s~L~~L~Ls~N~L~~LP~-~l~~sL~~L~Ls~N~Lt~LP~~lp~sL~~L~Ls~N~Lt~LP~~l~~sL~~L~Ls~N~Lt~  339 (754)
T PRK15370        261 PSALQSLDLFHNKISCLPE-NLPEELRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTALPETLPPGLKTLEAGENALTS  339 (754)
T ss_pred             hCCCCEEECcCCccCcccc-ccCCCCcEEECCCCccccCcccchhhHHHHHhcCCccccCCccccccceeccccCCcccc
Confidence            3489999999999986542 113589999999999998875445689999999999998764 34689999999999998


Q ss_pred             ccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh----h
Q psy12423        160 LIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI----R  235 (567)
Q Consensus       160 ~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~----~  235 (567)
                      ++. .++++|+.|++++|+|+.+|..+  .++|+.|+|++|.|+.+|..+.    ..|+.|++++|+|+.+|..+    .
T Consensus       340 LP~-~l~~sL~~L~Ls~N~L~~LP~~l--p~~L~~LdLs~N~Lt~LP~~l~----~sL~~LdLs~N~L~~LP~sl~~~~~  412 (754)
T PRK15370        340 LPA-SLPPELQVLDVSKNQITVLPETL--PPTITTLDVSRNALTNLPENLP----AALQIMQASRNNLVRLPESLPHFRG  412 (754)
T ss_pred             CCh-hhcCcccEEECCCCCCCcCChhh--cCCcCEEECCCCcCCCCCHhHH----HHHHHHhhccCCcccCchhHHHHhh
Confidence            654 34689999999999999998765  3689999999999999998763    47999999999999988654    4


Q ss_pred             CCCCCcEEEccCCCCC
Q psy12423        236 QIASLKYLFLQSNSIN  251 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~l~  251 (567)
                      .++.+..|+|.+|.|+
T Consensus       413 ~~~~l~~L~L~~Npls  428 (754)
T PRK15370        413 EGPQPTRIIVEYNPFS  428 (754)
T ss_pred             cCCCccEEEeeCCCcc
Confidence            4588999999999987

>KOG0700|consensus

Probab=99.84  E-value=7.3e-21  Score=187.66  Aligned_cols=141  Identities=17%  Similarity=0.198  Sum_probs=110.0

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhh---------------------------------h-hhhhhHHHHHHHH
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERT---------------------------------V-KETASDYMKYTML  346 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~---------------------------------l-~~~~~~~l~~a~l  346 (567)
                      --|+++||||+|++.+.++.+++-..+..+-.                                 . .....++|..+|.
T Consensus        99 ~~fvGIyDGhgGp~as~~v~~~L~~~v~~~L~~~~~~~~~~f~~e~~~~~~~~~~~~~~~~~~~~~~~~~v~~al~~Af~  178 (390)
T KOG0700|consen   99 WLFVGIYDGHGGPDASRFLSDHLYPYVARELQGLLWQDEERFPSEYKSEELEHLLVYWKQLSSADQRHGDVLEALSKAFE  178 (390)
T ss_pred             eEEEEEecCCCCccHHHHHHHHHHHHHHHHhhhhhhhhccccccccccchhhhhhhhhhcccccCccchhHHHHHHHHHH
Confidence            34789999999999999999977654441100                                 0 3445889999999


Q ss_pred             HHHHHHhhhcc--------cccCceeEEEEeecCccceEEEEEEEecCceEEEEe---CC---eeeeCCCCCC-------
Q psy12423        347 TAHREIKDSLH--------RYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCR---QA---GSLTFTHAPT-------  405 (567)
Q Consensus       347 ~~n~~i~~~~~--------~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r---~~---~~~~lt~dh~-------  405 (567)
                      .+++++.....        -..+++++|+......    .+|+||+|||||||++   .|   .++|||.||+       
T Consensus       179 ~tee~fl~~v~~~~~~~p~lA~~GSC~Lv~~i~~~----~LyVaN~GDSRAVLG~~~~~~~~~~A~qLS~dHn~~ne~Ev  254 (390)
T KOG0700|consen  179 ATEEDFLEMVDKQLQENPELALVGSCCLVGLIKGG----DLYVANVGDSRAVLGVVENNGSWLVAVQLSTDHNASNEDEV  254 (390)
T ss_pred             HHHHHHHHHHHHhhccchhhhhhcceEEEEEEeCC----eEEEEecCcchhhhceecCCCCeEEEEecChhhccccHHHH
Confidence            99987754332        1224455555555554    8999999999999976   33   3689999999       


Q ss_pred             --------------------------CCCCCCCCCC---------------------CCCccCCCceEEEEecCCCeEEE
Q psy12423        406 --------------------------LSPPVPPQGS---------------------CPLSFPDPHVTEVMLHENDHFLI  438 (567)
Q Consensus       406 --------------------------~~r~~g~~~~---------------------~~~~~~~p~v~~~~l~~~d~~li  438 (567)
                                                ++||+||..+                     +||++++|+|++++|++.|+|||
T Consensus       255 ~Rir~eHPdd~~~vv~~~~RvkG~L~vsRAfGd~~lK~~~~n~e~l~~~fr~~~~~t~PyltaeP~i~~HrL~p~DkFLI  334 (390)
T KOG0700|consen  255 RRIRSEHPDDPHIVVNKHWRVKGILQVSRAFGDGYLKWPEFNQEPLLEKFRIPYIGTPPYLTAEPSITHHKLTPNDKFLI  334 (390)
T ss_pred             HHHHHhCCCCcceEeeccceeeEEEEeeeeccceeecchhhccchhHhhcCCCCCCCCCceeccceEEEEEcCCCCeEEE
Confidence                                      7899998865                     89999999999999999999999


Q ss_pred             EEcCCCC
Q psy12423        439 LANKSVS  445 (567)
Q Consensus       439 l~sDGl~  445 (567)
                      +||||||
T Consensus       335 lASDGLw  341 (390)
T KOG0700|consen  335 LASDGLW  341 (390)
T ss_pred             Eeccchh
Confidence            9999999

>smart00332 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain

Probab=99.82  E-value=5.2e-19  Score=174.42  Aligned_cols=169  Identities=33%  Similarity=0.466  Sum_probs=137.7

Q ss_pred             CCcceeeccCCCCchhhhHHhhhhHHHHHhhhhhh----hhhhHHHHHHHHHHHHHHhhhccc----ccCceeEEEEeec
Q psy12423        300 SDALIGIFDSGDNGDIASTLVQSIPRILLEERTVK----ETASDYMKYTMLTAHREIKDSLHR----YSLSATLCHLSLH  371 (567)
Q Consensus       300 ~~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~----~~~~~~l~~a~l~~n~~i~~~~~~----~~~st~~~~~~~~  371 (567)
                      ...++.++||+++...+......+...+.+.....    ..+.++|..++..++..+......    ..++++++.+...
T Consensus        33 ~~~~~~v~DG~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~  112 (255)
T smart00332       33 SGAFFGVFDGHGGSEAAKFLSKNLPEILAEELIKHKDELEDVEEALRKAFLKTDEEILEELESLEEDAGSGSTAVVALIS  112 (255)
T ss_pred             CeEEEEEEeCCCcHHHHHHHHHHHHHHHHHhHhhcccchhHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCccEEEEEEE
Confidence            35688999999988888888888887776654322    246788999999998877665332    2355666656666


Q ss_pred             CccceEEEEEEEecCceEEEEeCCeeeeCCCCCCC---------------------------CCCCCCCCCCCCccCCCc
Q psy12423        372 PVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTL---------------------------SPPVPPQGSCPLSFPDPH  424 (567)
Q Consensus       372 ~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~---------------------------~r~~g~~~~~~~~~~~p~  424 (567)
                      ..    .++++|+||||+|++|+++..++|.||+.                           +|++|....++.+.++|+
T Consensus       113 ~~----~l~~~~vGDsr~y~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~lt~~~g~~~~~~~i~~~p~  188 (255)
T smart00332      113 GN----KLYVANVGDSRAVLCRNGKAVQLTEDHKPSNEDERARIEAAGGFVINGRVNGVLALSRAIGDFFLKPYVSAEPD  188 (255)
T ss_pred             CC----EEEEEeccCceEEEEeCCceeEcCCCCCCcCHHHHHHHHHcCCEEECCeECCeEecccccCCHhhcCCeEeeeE
Confidence            55    89999999999999999999999999996                           788888777788899999


Q ss_pred             eEEEEecCCCeEEEEEcCCCC----------------C---HHHHHHHHHHHHHHcCCCCCcEEEEE
Q psy12423        425 VTEVMLHENDHFLILANKSVS----------------E---PVLAAKRIQDLAQSYGSEDNLSVLVL  472 (567)
Q Consensus       425 v~~~~l~~~d~~lil~sDGl~----------------~---~~~~a~~l~~~a~~~g~~dnit~~vv  472 (567)
                      +...++...+++|||||||||                .   +.++|++|++.|..+|+.||+||+||
T Consensus       189 ~~~~~~~~~~d~ill~SDGv~~~l~~~~i~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~Dn~T~ivv  255 (255)
T smart00332      189 VTVVELTEKDDFLILASDGLWDVLSNQEVVDIVRKHLSKSDPEEAAKRLIDLALARGSKDNITVIVV  255 (255)
T ss_pred             EEEEEecCCCcEEEEECCccccCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHcCCCCCeEEEEC
Confidence            999997445678889999999                2   78899999999999999999999985

The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity.

>cd00143 PP2Cc Serine/threonine phosphatases, family 2C, catalytic domain; The protein architecture and deduced catalytic mechanism of PP2C phosphatases are similar to the PP1, PP2A, PP2B family of protein Ser/Thr phosphatases, with which PP2C shares no sequence similarity

Probab=99.80  E-value=2.5e-18  Score=169.25  Aligned_cols=170  Identities=28%  Similarity=0.377  Sum_probs=133.6

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh-----hhhhhHHHHHHHHHHHHHHhhhcc----cccCceeEEEEeec
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV-----KETASDYMKYTMLTAHREIKDSLH----RYSLSATLCHLSLH  371 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l-----~~~~~~~l~~a~l~~n~~i~~~~~----~~~~st~~~~~~~~  371 (567)
                      ..++.+.||+++...+......+...+.+....     ...+.+++..++..+++.+.....    ...++++++.+...
T Consensus        30 ~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~~~  109 (254)
T cd00143          30 GGLFGVFDGHGGHAAGEFASKLLVEELLEELEETLTLSEEDIEEALRKAFLRADEEILEEAQDEPDDARSGTTAVVALIR  109 (254)
T ss_pred             cEEEEEEcCCChHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCcEEEEEEE
Confidence            468899999998877777777777666554432     234577899999999998866542    23445555555555


Q ss_pred             CccceEEEEEEEecCceEEEEeCCeeeeCCCCCCC---------------------------CCCCCCCCCCCCccCCCc
Q psy12423        372 PVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTL---------------------------SPPVPPQGSCPLSFPDPH  424 (567)
Q Consensus       372 ~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~---------------------------~r~~g~~~~~~~~~~~p~  424 (567)
                      ..    .++++|+||||+|++|++..+++|.||+.                           +|++|....++.+.++|+
T Consensus       110 ~~----~l~~~~vGDsr~~~~~~~~~~~lt~dh~~~~~~~~~~i~~~~~~~~~~~~~~~~~~t~~lG~~~~~~~~~~~~~  185 (254)
T cd00143         110 GN----KLYVANVGDSRAVLCRNGEAVQLTKDHKPVNEEERERIEKAGGRVSNGRVPGVLAVTRALGDFDLKPGVSAEPD  185 (254)
T ss_pred             CC----EEEEEEecCcEEEEEcCCceeEcCCCCCCcChHHHHHHHHcCCcEEeCEEcCceeeccccCCccccCCEEcCCe
Confidence            54    89999999999999999999999999973                           455676655556788999


Q ss_pred             eEEEEecCCCeEEEEEcCCCC---------------C----HHHHHHHHHHHHHHcCCCCCcEEEEEEe
Q psy12423        425 VTEVMLHENDHFLILANKSVS---------------E----PVLAAKRIQDLAQSYGSEDNLSVLVLRF  474 (567)
Q Consensus       425 v~~~~l~~~d~~lil~sDGl~---------------~----~~~~a~~l~~~a~~~g~~dnit~~vv~~  474 (567)
                      +....+.+.+++++|||||||               .    +.++|++|++.|..+|+.||+||+|+++
T Consensus       186 ~~~~~l~~~~d~ill~SDG~~~~l~~~~i~~~~~~~~~~~~~~~~a~~l~~~a~~~~~~Dn~t~i~~~~  254 (254)
T cd00143         186 VTVVKLTEDDDFLILASDGLWDVLSNQEAVDIVRSELAKEDLQEAAQELVDLALRRGSHDNITVVVVRL  254 (254)
T ss_pred             EEEEEeCCCCcEEEEECCCCeeccChHHHHHHHHHHhcccCHHHHHHHHHHHHHhCCCCCCEEEEEEeC
Confidence            999999555677889999999               2    7789999999999999999999999975

>KOG0618|consensus

Probab=99.79  E-value=2.8e-21  Score=206.36  Aligned_cols=254  Identities=27%  Similarity=0.350  Sum_probs=127.3

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |++++++.|+++.+|++++.+.+|+.|+..+|.++.+|..++. ++.|+.+             ....+.+...+.....
T Consensus       243 l~~~dis~n~l~~lp~wi~~~~nle~l~~n~N~l~~lp~ri~~-~~~L~~l-------------~~~~nel~yip~~le~  308 (1081)
T KOG0618|consen  243 LQYLDISHNNLSNLPEWIGACANLEALNANHNRLVALPLRISR-ITSLVSL-------------SAAYNELEYIPPFLEG  308 (1081)
T ss_pred             ceeeecchhhhhcchHHHHhcccceEecccchhHHhhHHHHhh-hhhHHHH-------------HhhhhhhhhCCCcccc
Confidence            4677777777777777777777777777777777777766653 3333322             1122222333333444


Q ss_pred             CCCccEEEecCCCCCCcc--ccCCCC-CccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcEE
Q psy12423         81 KGELTSVNLRSNQLKGTI--ILGNYG-NLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLISV  150 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~--~l~~l~-~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L  150 (567)
                      +..|++|+|..|+|...+  .+..+. .|..|+.+.|.+...+   -..++.|+.|.+.+|.+++-.    .++.+|+.|
T Consensus       309 ~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVL  388 (1081)
T KOG0618|consen  309 LKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVL  388 (1081)
T ss_pred             cceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeee
Confidence            455555555555555433  122222 2444444444444332   122344555555555554321    234555555


Q ss_pred             EcCCCccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC
Q psy12423        151 IAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT  228 (567)
Q Consensus       151 ~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  228 (567)
                      ++++|++..++...+  +..|++|+||+|+++.+|..+..+..|++|...+|+|..+|. +..  ++.|+.+|+|.|+|+
T Consensus       389 hLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp~tva~~~~L~tL~ahsN~l~~fPe-~~~--l~qL~~lDlS~N~L~  465 (1081)
T KOG0618|consen  389 HLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLPDTVANLGRLHTLRAHSNQLLSFPE-LAQ--LPQLKVLDLSCNNLS  465 (1081)
T ss_pred             eecccccccCCHHHHhchHHhHHHhcccchhhhhhHHHHhhhhhHHHhhcCCceeechh-hhh--cCcceEEecccchhh
Confidence            555555555544444  445555555555555555555555555555555555555552 222  455555555555555


Q ss_pred             C--CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCC
Q psy12423        229 S--LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN  272 (567)
Q Consensus       229 ~--lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N  272 (567)
                      .  +|..... ++|++|||++|.-..+....|..++++..+++.-|
T Consensus       466 ~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~  510 (1081)
T KOG0618|consen  466 EVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN  510 (1081)
T ss_pred             hhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC
Confidence            4  2221111 45555555555433333333334444444444433

>KOG0699|consensus

Probab=99.78  E-value=6e-19  Score=169.11  Aligned_cols=127  Identities=15%  Similarity=0.199  Sum_probs=102.6

Q ss_pred             CceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC----------------------------CCCCCCC
Q psy12423        361 LSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT----------------------------LSPPVPP  412 (567)
Q Consensus       361 ~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~----------------------------~~r~~g~  412 (567)
                      +++++|+..+...    .+++||.||||+|++|.|+++-++.||+                            ++|++|+
T Consensus       330 SGtTAvVcLv~g~----~liVANAGDSRcV~sr~GkAvdmS~DHKPEDevE~~RI~~AGG~vtlDGRVNGGLNLSRA~GD  405 (542)
T KOG0699|consen  330 SGTTAVVCLVGGD----KLIVANAGDSRCVLSRNGKAVDMSVDHKPEDEVETNRIHAAGGQVTLDGRVNGGLNLSRAFGD  405 (542)
T ss_pred             CCceEEEEEecCc----eEEEecCCCcceEEecCCceeecccCCCcccHHHHHHHHhcCCeEeecceecCccchhhhhhh
Confidence            4455554444444    8999999999999999999999999999                            6899999


Q ss_pred             CCC---------CCCccCCCceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcC-
Q psy12423        413 QGS---------CPLSFPDPHVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYG-  462 (567)
Q Consensus       413 ~~~---------~~~~~~~p~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g-  462 (567)
                      +.+         .+.+++-|||....|++.|+|+||||||+|                    ....+++.|+|.+++-. 
T Consensus       406 HaYK~N~~Lp~eEQMIsALPDiK~l~lTpedEFmVvACDGIWN~MsSqeVVdFvr~~l~~n~~ls~iceeL~D~CLAp~T  485 (542)
T KOG0699|consen  406 HAYKKNQELPLEEQMISALPDIKILALTPEDEFMVVACDGIWNSMSSQEVVDFVRDLLAKNSSLSEICEELCDACLAPST  485 (542)
T ss_pred             hhhhcccCCChHHHHhhhcccceeEeecCcccEEEEEccchhhhccHHHHHHHHHHHHhcCchHHHHHHHHHHhhcCCCC
Confidence            987         456888999999999999999999999999                    45578889999998753 


Q ss_pred             -----CCCCcEEEEEEeC----CCCcChhhHHHHHhhh
Q psy12423        463 -----SEDNLSVLVLRFQ----GSEFDSRTRDAKLSSM  491 (567)
Q Consensus       463 -----~~dnit~~vv~~~----~~~~~~~~~~~~~~~~  491 (567)
                           +-||+|||++.|+    .-+.+...+.+.++..
T Consensus       486 ~GDGTGCDNMT~ii~~Fkrk~~elqpnq~e~kldq~~s  523 (542)
T KOG0699|consen  486 DGDGTGCDNMTVIITTFKRKSKELQPNQTEDKLDQSAS  523 (542)
T ss_pred             CCCCcCCCcceEEEEEeccchhhcCCcchhhHHHHHHH
Confidence                 3499999999999    2345555555555543

>PLN03210 Resistant to P

Probab=99.77  E-value=1.4e-17  Score=195.98  Aligned_cols=270  Identities=20%  Similarity=0.219  Sum_probs=167.2

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccC-CcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDED-GIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~-~l~~~~~~~~   79 (567)
                      |+.|.+.++.++.+|..| ...+|+.|+|++|++..++..+ ..++.|+.+             +.... .+...+ .+.
T Consensus       591 Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~-~~l~~Lk~L-------------~Ls~~~~l~~ip-~ls  654 (1153)
T PLN03210        591 LRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGV-HSLTGLRNI-------------DLRGSKNLKEIP-DLS  654 (1153)
T ss_pred             cEEEEecCCCCCCCCCcC-CccCCcEEECcCcccccccccc-ccCCCCCEE-------------ECCCCCCcCcCC-ccc
Confidence            355666666666666555 3456666666666666665543 234444433             11100 011111 234


Q ss_pred             CCCCccEEEecCCCCC-Ccc-ccCCCCCccEEEccCC-CCCCCCC-cccccCcEEEcccCc-ccceecCCCCCcEEEcCC
Q psy12423         80 VKGELTSVNLRSNQLK-GTI-ILGNYGNLTTLDVSEN-SIESLDL-GALNRLESIKCSRNQ-LKTLVLNGSSLISVIAGN  154 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~-~~~-~l~~l~~L~~L~L~~n-~l~~~~~-~~l~~L~~L~ls~n~-l~~l~~~~~~L~~L~l~~  154 (567)
                      .+++|++|+|++|... ..+ .+..+++|+.|++++| .++.++. ..+++|+.|++++|. +..++....+|+.|++++
T Consensus       655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~~  734 (1153)
T PLN03210        655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFPDISTNISWLDLDE  734 (1153)
T ss_pred             cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccccccCCcCeeecCC
Confidence            4566666666665432 222 4556666666666664 3444432 245666666666653 223333334556666666


Q ss_pred             CccccccCCC-------------------------------CCCcccEEecccCC-CCCcccccCCCcCCcEEECcCC-C
Q psy12423        155 NKLQSLIVSP-------------------------------RPARLQHLDISYNE-LESLPDWIDTCPELETIFASHN-R  201 (567)
Q Consensus       155 n~l~~~~~~~-------------------------------~~~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~N-~  201 (567)
                      |.+..++...                               .+++|+.|+|++|. +..+|.+++.+++|+.|+|++| .
T Consensus       735 n~i~~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~  814 (1153)
T PLN03210        735 TAIEEFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCIN  814 (1153)
T ss_pred             CccccccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCC
Confidence            6555443211                               13578888888874 4478888888999999999886 5


Q ss_pred             CCCCChhhhhccCCCccEEECCCC-CCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccC-CcCCCCCC
Q psy12423        202 ITQLPSQFFCRELGKLHTLQLSFN-RLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK-NCLKMLPS  279 (567)
Q Consensus       202 l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~-N~l~~ip~  279 (567)
                      +..+|...  . +++|+.|+|++| .+..+|..   .++|+.|+|++|.|+.+|..+ ..+++|+.|+|++ |+++.+|.
T Consensus       815 L~~LP~~~--~-L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~si-~~l~~L~~L~L~~C~~L~~l~~  887 (1153)
T PLN03210        815 LETLPTGI--N-LESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPWWI-EKFSNLSFLDMNGCNNLQRVSL  887 (1153)
T ss_pred             cCeeCCCC--C-ccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChHHH-hcCCCCCEEECCCCCCcCccCc
Confidence            77887765  2 788999999886 44455543   367889999999999988764 6889999999988 67888887


Q ss_pred             CCcCCccceeeccc
Q psy12423        280 LQKGFYLLNISQLR  293 (567)
Q Consensus       280 ~~~~~~~L~~~~l~  293 (567)
                      ....+..|....+.
T Consensus       888 ~~~~L~~L~~L~l~  901 (1153)
T PLN03210        888 NISKLKHLETVDFS  901 (1153)
T ss_pred             ccccccCCCeeecC
Confidence            77777666665554

syringae 6; Provisional

>KOG4237|consensus

Probab=99.76  E-value=1.5e-20  Score=183.66  Aligned_cols=290  Identities=18%  Similarity=0.216  Sum_probs=160.3

Q ss_pred             cEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          2 QEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      .+|+|..|.|+.||+ +|+.+++|+.|||++|.|+.|.+..|.+|..|..+.-.         .++..+.++  ...+..
T Consensus        70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvly---------g~NkI~~l~--k~~F~g  138 (498)
T KOG4237|consen   70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLY---------GNNKITDLP--KGAFGG  138 (498)
T ss_pred             eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhh---------cCCchhhhh--hhHhhh
Confidence            467888888888875 68888889999999998888888888877766554100         001111111  133344


Q ss_pred             CCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEE--cC
Q psy12423         81 KGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVI--AG  153 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~--l~  153 (567)
                      +..|+.|.+.-|++.-..  .|..+++|..|.+.+|.+..+.   +..+..++.+.+..|.+-.    ..+|+.+-  +.
T Consensus       139 L~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~ic----dCnL~wla~~~a  214 (498)
T KOG4237|consen  139 LSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFIC----DCNLPWLADDLA  214 (498)
T ss_pred             HHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccc----ccccchhhhHHh
Confidence            444555555444444322  3444555555555555544432   3333444444444443210    01111110  00


Q ss_pred             CCccccccCCCCCCcccEEecccCCCCCccc-ccCC-CcCCc-EEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423        154 NNKLQSLIVSPRPARLQHLDISYNELESLPD-WIDT-CPELE-TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL  230 (567)
Q Consensus       154 ~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~l~~-l~~L~-~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l  230 (567)
                      .+.+.    ........-..+.+.++..++. .|.. +..+. .+....+....-|...|.. +++|+.|+|++|+|+.+
T Consensus       215 ~~~ie----tsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~-L~~L~~lnlsnN~i~~i  289 (498)
T KOG4237|consen  215 MNPIE----TSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKK-LPNLRKLNLSNNKITRI  289 (498)
T ss_pred             hchhh----cccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhh-cccceEeccCCCccchh
Confidence            00000    0001112222233334443321 1111 11111 1222223344556666665 88888888888888887


Q ss_pred             ch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecccCCccccC---Cccee
Q psy12423        231 PS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQLRLPGFCNS---DALIG  305 (567)
Q Consensus       231 p~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~~~~~---~~~~~  305 (567)
                      .+ +|.+...+++|.|..|+|..+...+|.++..|+.|+|.+|+|+.+-+..+ .+.+|..+.+-.|+|+|.   .++.+
T Consensus       290 ~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~  369 (498)
T KOG4237|consen  290 EDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGE  369 (498)
T ss_pred             hhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHH
Confidence            54 78888888999999999988888888899999999999999987765544 344444444445555544   44555


Q ss_pred             eccCCC
Q psy12423        306 IFDSGD  311 (567)
Q Consensus       306 ~~dg~~  311 (567)
                      |+.+..
T Consensus       370 Wlr~~~  375 (498)
T KOG4237|consen  370 WLRKKS  375 (498)
T ss_pred             HHhhCC
Confidence            666544

>KOG1323|consensus

Probab=99.75  E-value=3.5e-17  Score=155.53  Aligned_cols=133  Identities=23%  Similarity=0.272  Sum_probs=109.5

Q ss_pred             hHHHHHHHHHHHHHHhhhcc---cccCceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------
Q psy12423        338 SDYMKYTMLTAHREIKDSLH---RYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------  405 (567)
Q Consensus       338 ~~~l~~a~l~~n~~i~~~~~---~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------  405 (567)
                      ..++..+|..+++.+....+   ..|++++.++++...     ++|+||.|||||+++|+|+.++|+.+.+         
T Consensus       221 iGAlEsAFqemDeqiarer~~~~~~GGCtalvvi~llG-----KlYvaNAGDsRAIlVrndeirplS~efTPetERqRlQ  295 (493)
T KOG1323|consen  221 IGALESAFQEMDEQIARERQVWRLPGGCTALVVIVLLG-----KLYVANAGDSRAILVRNDEIRPLSKEFTPETERQRLQ  295 (493)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEeeeecc-----ceEEccCCCceEEEEecCCeeecccccCcHHHHHHHH
Confidence            67899999999998877654   234445555555555     8999999999999999999999999887         


Q ss_pred             -----------------------------------------------------------------------CCCCCCCCC
Q psy12423        406 -----------------------------------------------------------------------LSPPVPPQG  414 (567)
Q Consensus       406 -----------------------------------------------------------------------~~r~~g~~~  414 (567)
                                                                                             ++|.+||..
T Consensus       296 ~Laf~~PeLlgneFtrLEfprRl~~~dLgqrvLyRD~~MtGWayKtve~~DLr~pLI~gegrkaRll~TigVsRGlGDH~  375 (493)
T KOG1323|consen  296 ELAFRNPELLGNEFTRLEFPRRLTIKDLGQRVLYRDWNMTGWAYKTVEEEDLRFPLISGEGRKARLLATIGVSRGLGDHH  375 (493)
T ss_pred             HHhhcChHhhcccccceecccccChhhhcceeeeeccccccceeehhhhhcCCcceecccchhhhhhhhheeccccCcce
Confidence                                                                                   788899886


Q ss_pred             C---------CCCccCCCceEEEEec----CCCeEEEEEcCCCC----------------------CHH---HHHHHHHH
Q psy12423        415 S---------CPLSFPDPHVTEVMLH----ENDHFLILANKSVS----------------------EPV---LAAKRIQD  456 (567)
Q Consensus       415 ~---------~~~~~~~p~v~~~~l~----~~d~~lil~sDGl~----------------------~~~---~~a~~l~~  456 (567)
                      +         +|++.+.|+|+.+.++    ..|+.+|+||||||                      ||.   .+|+.|+.
T Consensus       376 Lkv~dsnl~iKPFLssvPeV~V~dl~q~e~~~DdVvilatDGLWDVlSneeva~~Vrs~L~~~dp~Dp~RYt~aaqdlva  455 (493)
T KOG1323|consen  376 LKVVDSNLSIKPFLSSVPEVRVYDLRQYEHLTDDVVILATDGLWDVLSNEEVALIVRSFLPSTDPADPSRYTQAAQDLVA  455 (493)
T ss_pred             eeeecCCcccchhhhcCCeeEEEehhhhccCCCcEEEEecCchhhhcccHHHHHHHHHhcCCCCCCChhHHHHHHHHHHH
Confidence            5         8999999999999998    35679999999999                      332   57888888


Q ss_pred             HHHH-------------cCCCCCcEEEEEEeC
Q psy12423        457 LAQS-------------YGSEDNLSVLVLRFQ  475 (567)
Q Consensus       457 ~a~~-------------~g~~dnit~~vv~~~  475 (567)
                      .|..             .|+.|+|||.||.+.
T Consensus       456 ~arg~~k~rgWr~~n~~lgSgDDIsVfVIPL~  487 (493)
T KOG1323|consen  456 AARGQQKDRGWRMNNGGLGSGDDISVFVIPLK  487 (493)
T ss_pred             HhcCccCCCceeccCCCcCCCCceEEEEEecc
Confidence            8765             367899999999887

>PLN03210 Resistant to P

Probab=99.72  E-value=1.7e-16  Score=186.85  Aligned_cols=251  Identities=16%  Similarity=0.204  Sum_probs=176.4

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCC-CCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNR-ISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~-i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|.+..+|..+..+++|+.|+|++|. +..+|..  ..+++|+.+          .+.  +...+...+..+.
T Consensus       613 L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~l--s~l~~Le~L----------~L~--~c~~L~~lp~si~  678 (1153)
T PLN03210        613 LVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDL--SMATNLETL----------KLS--DCSSLVELPSSIQ  678 (1153)
T ss_pred             CcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCcc--ccCCcccEE----------Eec--CCCCccccchhhh
Confidence            678999999999999889999999999998865 6677752  244555443          000  1112233344556


Q ss_pred             CCCCccEEEecCCC-CCCccccCCCCCccEEEccCCCCC-CCCCcccccCcEEEcccCcccceec---------------
Q psy12423         80 VKGELTSVNLRSNQ-LKGTIILGNYGNLTTLDVSENSIE-SLDLGALNRLESIKCSRNQLKTLVL---------------  142 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~-l~~~~~l~~l~~L~~L~L~~n~l~-~~~~~~l~~L~~L~ls~n~l~~l~~---------------  142 (567)
                      .+++|+.|++++|. +...+...++++|+.|++++|... .++ ....+|+.|++++|.+..++.               
T Consensus       679 ~L~~L~~L~L~~c~~L~~Lp~~i~l~sL~~L~Lsgc~~L~~~p-~~~~nL~~L~L~~n~i~~lP~~~~l~~L~~L~l~~~  757 (1153)
T PLN03210        679 YLNKLEDLDMSRCENLEILPTGINLKSLYRLNLSGCSRLKSFP-DISTNISWLDLDETAIEEFPSNLRLENLDELILCEM  757 (1153)
T ss_pred             ccCCCCEEeCCCCCCcCccCCcCCCCCCCEEeCCCCCCccccc-cccCCcCeeecCCCcccccccccccccccccccccc
Confidence            66777777777753 333332225666777777666422 221 223455666666665544331               


Q ss_pred             ------------------CCCCCcEEEcCCCccccccCCCC--CCcccEEecccC-CCCCcccccCCCcCCcEEECcCCC
Q psy12423        143 ------------------NGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYN-ELESLPDWIDTCPELETIFASHNR  201 (567)
Q Consensus       143 ------------------~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n-~l~~lp~~l~~l~~L~~L~Ls~N~  201 (567)
                                        ..++|+.|++++|......+..+  +++|+.|+|++| .++.+|..+ .+++|+.|++++|.
T Consensus       758 ~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~  836 (1153)
T PLN03210        758 KSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCS  836 (1153)
T ss_pred             chhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCC
Confidence                              12477888888876444334434  889999999987 577888765 78999999999974


Q ss_pred             -CCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccC-CCCCCCchhhhcCCCCCcEEEccCCc
Q psy12423        202 -ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS-NSINILPQLFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       202 -l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~-N~l~~l~~~~l~~l~~L~~L~Ls~N~  273 (567)
                       +..+|..     +.+|+.|+|++|.|+.+|.++..+++|+.|+|++ +.++.+|... ..+++|+.|++++|.
T Consensus       837 ~L~~~p~~-----~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~-~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        837 RLRTFPDI-----STNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNI-SKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccccc-----ccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccc-ccccCCCeeecCCCc
Confidence             5566542     5689999999999999999999999999999999 4788888765 688999999999984

syringae 6; Provisional

>KOG0617|consensus

Probab=99.63  E-value=5.6e-18  Score=148.00  Aligned_cols=164  Identities=30%  Similarity=0.445  Sum_probs=134.9

Q ss_pred             cCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCCCCcccEEecccC
Q psy12423        100 LGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN  177 (567)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n  177 (567)
                      +-++.+++.|.|++|+++.++  +..+.+|+.|++++|++++++...++                   ++.|+.|+++-|
T Consensus        29 Lf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~iss-------------------l~klr~lnvgmn   89 (264)
T KOG0617|consen   29 LFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISS-------------------LPKLRILNVGMN   89 (264)
T ss_pred             ccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhh-------------------chhhhheecchh
Confidence            344556667777777777654  55566666666666666555533222                   568889999999


Q ss_pred             CCCCcccccCCCcCCcEEECcCCCCC--CCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCch
Q psy12423        178 ELESLPDWIDTCPELETIFASHNRIT--QLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQ  255 (567)
Q Consensus       178 ~l~~lp~~l~~l~~L~~L~Ls~N~l~--~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~  255 (567)
                      ++..+|..|+.++.|+.|+|.+|++.  .+|..+|.  +..|+.|.|+.|.+.-+|..++.+++|+.|.+..|.+-++|.
T Consensus        90 rl~~lprgfgs~p~levldltynnl~e~~lpgnff~--m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll~lpk  167 (264)
T KOG0617|consen   90 RLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFFY--MTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLLSLPK  167 (264)
T ss_pred             hhhcCccccCCCchhhhhhccccccccccCCcchhH--HHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchhhCcH
Confidence            99999999999999999999999998  78888886  889999999999999999999999999999999999999999


Q ss_pred             hhhcCCCCCcEEEccCCcCCCCCCCCcCCc
Q psy12423        256 LFLQNSSKLKVLNISKNCLKMLPSLQKGFY  285 (567)
Q Consensus       256 ~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~  285 (567)
                      ++ +.+..|++|++.+|+++.+|++...+.
T Consensus       168 ei-g~lt~lrelhiqgnrl~vlppel~~l~  196 (264)
T KOG0617|consen  168 EI-GDLTRLRELHIQGNRLTVLPPELANLD  196 (264)
T ss_pred             HH-HHHHHHHHHhcccceeeecChhhhhhh
Confidence            86 789999999999999999998766543

>KOG4237|consensus

Probab=99.63  E-value=1.8e-17  Score=162.33  Aligned_cols=290  Identities=19%  Similarity=0.177  Sum_probs=209.4

Q ss_pred             EccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCc
Q psy12423          5 RVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGEL   84 (567)
Q Consensus         5 ~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L   84 (567)
                      +-++-.++++|..+.  +.-..++|..|.|+.||+..|..+                                    ++|
T Consensus        52 dCr~~GL~eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l------------------------------------~~L   93 (498)
T KOG4237|consen   52 DCRGKGLTEVPANLP--PETVEIRLDQNQISSIPPGAFKTL------------------------------------HRL   93 (498)
T ss_pred             EccCCCcccCcccCC--CcceEEEeccCCcccCChhhccch------------------------------------hhh
Confidence            445557778876444  367788999999999998887533                                    478


Q ss_pred             cEEEecCCCCCCcc--ccCCCCCccEEEccC-CCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcEEEcCC
Q psy12423         85 TSVNLRSNQLKGTI--ILGNYGNLTTLDVSE-NSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGN  154 (567)
Q Consensus        85 ~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~  154 (567)
                      +.|||++|+|+.+.  .|.++++|..|-+.+ |+|+.++   |+.+..|+.|.+.-|++.-+.    ..++++..|.+..
T Consensus        94 RrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyD  173 (498)
T KOG4237|consen   94 RRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYD  173 (498)
T ss_pred             ceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccc
Confidence            88999999998765  788888888776665 8999885   777778888888888877554    4567777888888


Q ss_pred             CccccccCCCC--CCcccEEecccCCCC-------------CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccE
Q psy12423        155 NKLQSLIVSPR--PARLQHLDISYNELE-------------SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHT  219 (567)
Q Consensus       155 n~l~~~~~~~~--~~~L~~L~Ls~n~l~-------------~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~  219 (567)
                      |.+..+....+  +..++.+.+..|.+-             ..|-.+++.....-..+.++++..++..-|...+..+..
T Consensus       174 n~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s  253 (498)
T KOG4237|consen  174 NKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPS  253 (498)
T ss_pred             hhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHH
Confidence            88887777666  677888887777632             123334555566666667777777776655321112221


Q ss_pred             EECCCC-CCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecccCCc
Q psy12423        220 LQLSFN-RLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQLRLPG  296 (567)
Q Consensus       220 L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~  296 (567)
                      --.+.+ .....|. .|..+++|+.|+|++|.|+.|.+..|.....+++|.|..|+|..+...++ ++..|..+++..|.
T Consensus       254 ~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~  333 (498)
T KOG4237|consen  254 RLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQ  333 (498)
T ss_pred             hhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCe
Confidence            112223 3333453 68999999999999999999999999999999999999999998887655 78888888887777


Q ss_pred             cccC-Cccee------eccCCCCchhhhHHhhhhHHHHHhhhh
Q psy12423        297 FCNS-DALIG------IFDSGDNGDIASTLVQSIPRILLEERT  332 (567)
Q Consensus       297 ~~~~-~~~~~------~~dg~~~~~is~~l~~~lP~~l~~~~~  332 (567)
                      ..+. ...|.      .+..-.++..+++-..|+-+|+.+...
T Consensus       334 it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~  376 (498)
T KOG4237|consen  334 ITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSV  376 (498)
T ss_pred             eEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCC
Confidence            6655 22221      222356777788888899999887763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.59  E-value=7.2e-16  Score=157.13  Aligned_cols=239  Identities=21%  Similarity=0.209  Sum_probs=115.4

Q ss_pred             EEEccCCCCC--cCCccCCCCCCCCEEeCcCCCCCCCCh-hhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          3 EFRVDRNDLT--EFPGNQDSFPRLKFLSAAQNRISHLPV-FLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         3 ~L~Ls~n~l~--~lp~~~~~l~~L~~L~Ls~n~i~~lp~-~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      .|+|.++.++  ..+..|..+.+|+.|+++++.++.-.. .+...+                                 .
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l---------------------------------~   48 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASAL---------------------------------R   48 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHH---------------------------------h
Confidence            5778888776  344556677789999999988863111 111100                                 1


Q ss_pred             CCCCccEEEecCCCCCC--cc------ccCCCCCccEEEccCCCCCCCC---Cccc---ccCcEEEcccCcccce-----
Q psy12423         80 VKGELTSVNLRSNQLKG--TI------ILGNYGNLTTLDVSENSIESLD---LGAL---NRLESIKCSRNQLKTL-----  140 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~--~~------~l~~l~~L~~L~L~~n~l~~~~---~~~l---~~L~~L~ls~n~l~~l-----  140 (567)
                      ..++|++|+++++.+..  ..      .+..+++|+.|++++|.+....   +..+   ++|++|++++|.+...     
T Consensus        49 ~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l  128 (319)
T cd00116          49 PQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLL  128 (319)
T ss_pred             hCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHH
Confidence            12345555555554441  00      2334455555555555554210   1122   2255555555555421     


Q ss_pred             ---ecCC-CCCcEEEcCCCccccccCCCC------CCcccEEecccCCCC-----CcccccCCCcCCcEEECcCCCCCCC
Q psy12423        141 ---VLNG-SSLISVIAGNNKLQSLIVSPR------PARLQHLDISYNELE-----SLPDWIDTCPELETIFASHNRITQL  205 (567)
Q Consensus       141 ---~~~~-~~L~~L~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~l  205 (567)
                         .... ++|+.|++++|.++......+      +.+|++|++++|.++     .++..+..+++|+.|++++|.++..
T Consensus       129 ~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~  208 (319)
T cd00116         129 AKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDE  208 (319)
T ss_pred             HHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChH
Confidence               1122 455555555555552211111      345666666666555     1222334445666666666665532


Q ss_pred             Chh----hhhccCCCccEEECCCCCCCC--Cchhhh----CCCCCcEEEccCCCCCCCch----hhhcCCCCCcEEEccC
Q psy12423        206 PSQ----FFCRELGKLHTLQLSFNRLTS--LPSLIR----QIASLKYLFLQSNSINILPQ----LFLQNSSKLKVLNISK  271 (567)
Q Consensus       206 ~~~----~~~~~l~~L~~L~Ls~N~l~~--lp~~~~----~l~~L~~L~Ls~N~l~~l~~----~~l~~l~~L~~L~Ls~  271 (567)
                      ...    .+.. +++|++|++++|.++.  +.....    ..+.|+.|++++|.++....    ..+..+++|+.+++++
T Consensus       209 ~~~~l~~~~~~-~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~  287 (319)
T cd00116         209 GASALAETLAS-LKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRG  287 (319)
T ss_pred             HHHHHHHHhcc-cCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCC
Confidence            211    1111 4556666666666553  111111    13566666666666542111    1223445666666666


Q ss_pred             CcCC
Q psy12423        272 NCLK  275 (567)
Q Consensus       272 N~l~  275 (567)
                      |.++
T Consensus       288 N~l~  291 (319)
T cd00116         288 NKFG  291 (319)
T ss_pred             CCCc
Confidence            6665

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617|consensus

Probab=99.54  E-value=1.4e-16  Score=139.24  Aligned_cols=154  Identities=26%  Similarity=0.366  Sum_probs=137.1

Q ss_pred             CCCCcEEEcCCCccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEEC
Q psy12423        144 GSSLISVIAGNNKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL  222 (567)
Q Consensus       144 ~~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L  222 (567)
                      +..+..|.+++|+++.+++... +.+|+.|++++|+|+++|..++.++.|+.|+++-|++..+|.++..  ++.|+.|||
T Consensus        32 ~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs--~p~levldl  109 (264)
T KOG0617|consen   32 MSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGS--FPALEVLDL  109 (264)
T ss_pred             hhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCC--Cchhhhhhc
Confidence            4455666677777777776655 7899999999999999999999999999999999999999998765  999999999


Q ss_pred             CCCCCCC--CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        223 SFNRLTS--LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       223 s~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      .+|++.+  +|..|..++.|+.|+|+.|.+.-+|+++ +++++|+.|.+..|.+-++|.++..+..|+-+++.+|.+.-.
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dv-g~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl~vl  188 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDV-GKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRLTVL  188 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcccCChhh-hhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccceeeec
Confidence            9999985  8998889999999999999999999987 899999999999999999999999999888888887776654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.53  E-value=2.4e-15  Score=153.26  Aligned_cols=244  Identities=23%  Similarity=0.260  Sum_probs=175.3

Q ss_pred             CcEEEccCCCCC-----cCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc
Q psy12423          1 LQEFRVDRNDLT-----EFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER   75 (567)
Q Consensus         1 L~~L~Ls~n~l~-----~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~   75 (567)
                      |++|+++++.++     .++..+...++|++|+++++.+...+..+..    +                          .
T Consensus        25 L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~----~--------------------------~   74 (319)
T cd00116          25 LQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQS----L--------------------------L   74 (319)
T ss_pred             ccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHH----H--------------------------H
Confidence            578999999985     4666778888999999999987754433211    0                          0


Q ss_pred             CCCCCCCCccEEEecCCCCCCcc--ccCCC---CCccEEEccCCCCCCC-------CCccc-ccCcEEEcccCcccce--
Q psy12423         76 REPEVKGELTSVNLRSNQLKGTI--ILGNY---GNLTTLDVSENSIESL-------DLGAL-NRLESIKCSRNQLKTL--  140 (567)
Q Consensus        76 ~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l---~~L~~L~L~~n~l~~~-------~~~~l-~~L~~L~ls~n~l~~l--  140 (567)
                      ..+..+++|+.|++++|.+....  .+..+   ++|++|++++|.+...       .+..+ ++|+.|++++|.++..  
T Consensus        75 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  154 (319)
T cd00116          75 QGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC  154 (319)
T ss_pred             HHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH
Confidence            11223569999999999987432  23333   5599999999998742       24455 8899999999998832  


Q ss_pred             ------ecCCCCCcEEEcCCCccccccCCCC------CCcccEEecccCCCCC-----cccccCCCcCCcEEECcCCCCC
Q psy12423        141 ------VLNGSSLISVIAGNNKLQSLIVSPR------PARLQHLDISYNELES-----LPDWIDTCPELETIFASHNRIT  203 (567)
Q Consensus       141 ------~~~~~~L~~L~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~N~l~  203 (567)
                            ...+.+|+.|++++|.+++.....+      .++|++|++++|.++.     ++..+..+++|++|++++|.++
T Consensus       155 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~  234 (319)
T cd00116         155 EALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLT  234 (319)
T ss_pred             HHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCc
Confidence                  1345789999999999885322211      4589999999999873     3456778899999999999988


Q ss_pred             CCChhh-hhc---cCCCccEEECCCCCCCC-----CchhhhCCCCCcEEEccCCCCCCCchh----hhcCC-CCCcEEEc
Q psy12423        204 QLPSQF-FCR---ELGKLHTLQLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQL----FLQNS-SKLKVLNI  269 (567)
Q Consensus       204 ~l~~~~-~~~---~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l~~~----~l~~l-~~L~~L~L  269 (567)
                      ...... ...   ..+.|++|++++|.++.     +...+..+++|++|++++|.++..+..    .+... +.|++|++
T Consensus       235 ~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~  314 (319)
T cd00116         235 DAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWV  314 (319)
T ss_pred             hHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhccc
Confidence            422211 111   13799999999999973     445567778999999999999955332    23334 78999999


Q ss_pred             cCCcC
Q psy12423        270 SKNCL  274 (567)
Q Consensus       270 s~N~l  274 (567)
                      .+|++
T Consensus       315 ~~~~~  319 (319)
T cd00116         315 KDDSF  319 (319)
T ss_pred             CCCCC
Confidence            98865

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0532|consensus

Probab=99.33  E-value=6.4e-14  Score=143.39  Aligned_cols=189  Identities=26%  Similarity=0.332  Sum_probs=156.4

Q ss_pred             CCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecC--CCCCcEEEcCCCc
Q psy12423         82 GELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLN--GSSLISVIAGNNK  156 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~--~~~L~~L~l~~n~  156 (567)
                      ..-...||+.|++...+ .+..+..|+.+.|+.|.+..++  +..+..|++|+|+.|++..++..  ..-|+.|.+++|+
T Consensus        75 tdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sNNk  154 (722)
T KOG0532|consen   75 TDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSNNK  154 (722)
T ss_pred             cchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEecCc
Confidence            34556789999988776 6677778999999999988874  77888999999999999988754  3467889999999


Q ss_pred             cccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhh
Q psy12423        157 LQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR  235 (567)
Q Consensus       157 l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  235 (567)
                      ++.++...- ...|..||.+.|.+..+|..++.+.+|+.|++..|.+..+|.++..  + .|..||+|+|++..||..|.
T Consensus       155 l~~lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn~l~~lp~El~~--L-pLi~lDfScNkis~iPv~fr  231 (722)
T KOG0532|consen  155 LTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRNHLEDLPEELCS--L-PLIRLDFSCNKISYLPVDFR  231 (722)
T ss_pred             cccCCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhhhhhhCCHHHhC--C-ceeeeecccCceeecchhhh
Confidence            988877665 7788899999999999998899999999999999999999988763  3 68899999999999999999


Q ss_pred             CCCCCcEEEccCCCCCCCchhhh--cCCCCCcEEEccCCc
Q psy12423        236 QIASLKYLFLQSNSINILPQLFL--QNSSKLKVLNISKNC  273 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~l~~l~~~~l--~~l~~L~~L~Ls~N~  273 (567)
                      .|+.|++|-|.+|.++.-|..+.  +...-.++|+..-++
T Consensus       232 ~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  232 KMRHLQVLQLENNPLQSPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhhhheeeeeccCCCCCChHHHHhccceeeeeeecchhcc
Confidence            99999999999999998888653  334456777777773

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.31  E-value=2.2e-12  Score=135.60  Aligned_cols=193  Identities=31%  Similarity=0.394  Sum_probs=158.4

Q ss_pred             EEEecCCCCC-CccccCCCCCccEEEccCCCCCCCC--Ccccc-cCcEEEcccCcccce---ecCCCCCcEEEcCCCccc
Q psy12423         86 SVNLRSNQLK-GTIILGNYGNLTTLDVSENSIESLD--LGALN-RLESIKCSRNQLKTL---VLNGSSLISVIAGNNKLQ  158 (567)
Q Consensus        86 ~L~Ls~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~~--~~~l~-~L~~L~ls~n~l~~l---~~~~~~L~~L~l~~n~l~  158 (567)
                      .+++..|.+. ....+..++.++.|++.+|.++.++  ...+. +|+.|+++.|++..+   ...++.|+.|++++|++.
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~  176 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS  176 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence            5788888873 3336666788999999999999875  34443 899999999999887   256889999999999999


Q ss_pred             cccCCC-CCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCC
Q psy12423        159 SLIVSP-RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI  237 (567)
Q Consensus       159 ~~~~~~-~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l  237 (567)
                      .++... .++.|+.|++++|++..+|........|++|.+++|.+..++..+..  +.++..|.+.+|++..++..+..+
T Consensus       177 ~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~--~~~l~~l~l~~n~~~~~~~~~~~l  254 (394)
T COG4886         177 DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSIIELLSSLSN--LKNLSGLELSNNKLEDLPESIGNL  254 (394)
T ss_pred             hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcceecchhhhh--cccccccccCCceeeeccchhccc
Confidence            988877 47889999999999999988766677799999999976666665554  778888889999988888888889


Q ss_pred             CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc
Q psy12423        238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK  282 (567)
Q Consensus       238 ~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~  282 (567)
                      ++++.|++++|.++.++.  +..+.+|+.|++++|.+..++....
T Consensus       255 ~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~~~~  297 (394)
T COG4886         255 SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALPLIA  297 (394)
T ss_pred             cccceecccccccccccc--ccccCccCEEeccCccccccchhhh
Confidence            999999999999999988  5788999999999999987765433

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.29  E-value=3.3e-12  Score=116.61  Aligned_cols=83  Identities=29%  Similarity=0.435  Sum_probs=23.2

Q ss_pred             CcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch--hhhCCCCCcEEE
Q psy12423        167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--LIRQIASLKYLF  244 (567)
Q Consensus       167 ~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~  244 (567)
                      .+|+.|+|++|.|+.++. +..++.|++|++++|+|+.++..+... +++|++|+|++|+|..+..  .+..+++|+.|+
T Consensus        42 ~~L~~L~Ls~N~I~~l~~-l~~L~~L~~L~L~~N~I~~i~~~l~~~-lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~  119 (175)
T PF14580_consen   42 DKLEVLDLSNNQITKLEG-LPGLPRLKTLDLSNNRISSISEGLDKN-LPNLQELYLSNNKISDLNELEPLSSLPKLRVLS  119 (175)
T ss_dssp             TT--EEE-TTS--S--TT-----TT--EEE--SS---S-CHHHHHH--TT--EEE-TTS---SCCCCGGGGG-TT--EEE
T ss_pred             cCCCEEECCCCCCccccC-ccChhhhhhcccCCCCCCccccchHHh-CCcCCEEECcCCcCCChHHhHHHHcCCCcceee
Confidence            445555555555554432 444455555555555555544333222 4455555555555444322  234444455555


Q ss_pred             ccCCCCC
Q psy12423        245 LQSNSIN  251 (567)
Q Consensus       245 Ls~N~l~  251 (567)
                      |.+|.++
T Consensus       120 L~~NPv~  126 (175)
T PF14580_consen  120 LEGNPVC  126 (175)
T ss_dssp             -TT-GGG
T ss_pred             ccCCccc
Confidence            5555444

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.27  E-value=4.2e-12  Score=133.52  Aligned_cols=173  Identities=32%  Similarity=0.361  Sum_probs=144.4

Q ss_pred             CCccEEEecCCCCCCccccCCCC--CccEEEccCCCCCCC--CCcccccCcEEEcccCcccceec---CCCCCcEEEcCC
Q psy12423         82 GELTSVNLRSNQLKGTIILGNYG--NLTTLDVSENSIESL--DLGALNRLESIKCSRNQLKTLVL---NGSSLISVIAGN  154 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~l~~l~--~L~~L~L~~n~l~~~--~~~~l~~L~~L~ls~n~l~~l~~---~~~~L~~L~l~~  154 (567)
                      +.++.|++.+|.++.......+.  +|+.|++++|.+..+  ++..+++|+.|+++.|++..++.   ..+.|..|++++
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~  195 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSG  195 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccC
Confidence            46888889999888877433333  899999999999887  68889999999999999988875   678899999999


Q ss_pred             CccccccCCC-CCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh
Q psy12423        155 NKLQSLIVSP-RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL  233 (567)
Q Consensus       155 n~l~~~~~~~-~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  233 (567)
                      |++..++... .+..|++|.+++|.+..++..+..+.++..|.+.+|++..++.....  +++++.|++++|.++.++. 
T Consensus       196 N~i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--l~~l~~L~~s~n~i~~i~~-  272 (394)
T COG4886         196 NKISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKLEDLPESIGN--LSNLETLDLSNNQISSISS-  272 (394)
T ss_pred             CccccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCceeeeccchhcc--ccccceecccccccccccc-
Confidence            9999888874 46679999999997777777788889999999999998876655543  7789999999999999887 


Q ss_pred             hhCCCCCcEEEccCCCCCCCchhh
Q psy12423        234 IRQIASLKYLFLQSNSINILPQLF  257 (567)
Q Consensus       234 ~~~l~~L~~L~Ls~N~l~~l~~~~  257 (567)
                      +..+.+|+.|++++|.+..+++..
T Consensus       273 ~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         273 LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             ccccCccCEEeccCccccccchhh
Confidence            888899999999999988776654

>KOG1909|consensus

Probab=99.26  E-value=5.9e-13  Score=129.30  Aligned_cols=191  Identities=21%  Similarity=0.228  Sum_probs=120.4

Q ss_pred             CCCCCccEEEecCCCCCCcc------ccCCCCCccEEEccCCCCCCCCCcccc-cCcEEEcccCcccceecCCCCCcEEE
Q psy12423         79 EVKGELTSVNLRSNQLKGTI------ILGNYGNLTTLDVSENSIESLDLGALN-RLESIKCSRNQLKTLVLNGSSLISVI  151 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~-~L~~L~ls~n~l~~l~~~~~~L~~L~  151 (567)
                      ..+++|++|+||.|-+....      .+..+..|++|.|.+|.+....-+.+. .|..|.  .   .......+.|+.+.
T Consensus        89 ~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~---~kk~~~~~~Lrv~i  163 (382)
T KOG1909|consen   89 LGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--V---NKKAASKPKLRVFI  163 (382)
T ss_pred             hcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--H---HhccCCCcceEEEE
Confidence            34557777777777665422      245566777777777766543211100 011111  0   01123346677777


Q ss_pred             cCCCccccccCCCC------CCcccEEecccCCCC--C---cccccCCCcCCcEEECcCCCCCCCChh----hhhccCCC
Q psy12423        152 AGNNKLQSLIVSPR------PARLQHLDISYNELE--S---LPDWIDTCPELETIFASHNRITQLPSQ----FFCRELGK  216 (567)
Q Consensus       152 l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~--~---lp~~l~~l~~L~~L~Ls~N~l~~l~~~----~~~~~l~~  216 (567)
                      +.+|++..-+...+      .+.|+.+.++.|.|.  .   +...+..+++|+.|||..|-++.-...    .+.. +++
T Consensus       164 ~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s-~~~  242 (382)
T KOG1909|consen  164 CGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSS-WPH  242 (382)
T ss_pred             eeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcc-cch
Confidence            77777766554433      567888888888776  1   234678889999999999988732221    1222 778


Q ss_pred             ccEEECCCCCCCC-----Cchhh-hCCCCCcEEEccCCCCCCC----chhhhcCCCCCcEEEccCCcCC
Q psy12423        217 LHTLQLSFNRLTS-----LPSLI-RQIASLKYLFLQSNSINIL----PQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       217 L~~L~Ls~N~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~l----~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      |++|++++|.+..     +...+ ...++|++|.|.+|.|+.-    ........+.|..|+|++|.+.
T Consensus       243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~  311 (382)
T KOG1909|consen  243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG  311 (382)
T ss_pred             heeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence            9999999998875     22222 4578999999999999832    1122345789999999999985

>KOG0532|consensus

Probab=99.24  E-value=5.1e-13  Score=136.88  Aligned_cols=175  Identities=30%  Similarity=0.340  Sum_probs=133.5

Q ss_pred             CCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceec---CCCCCcEEEcCCCccccccCCCCCCcccEEeccc
Q psy12423        102 NYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVL---NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISY  176 (567)
Q Consensus       102 ~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~---~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~  176 (567)
                      .+..-...||+.|++..++  ...|..|+.+.+..|.+..++.   ++..|..++++.|++..++...+.--|+.|-+++
T Consensus        73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lpLkvli~sN  152 (722)
T KOG0532|consen   73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLPLKVLIVSN  152 (722)
T ss_pred             cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCcceeEEEec
Confidence            3445567788888888875  5667788888888888877763   4566677788888887777766655678888888


Q ss_pred             CCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchh
Q psy12423        177 NELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL  256 (567)
Q Consensus       177 n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~  256 (567)
                      |+++.+|+.++....|..|+.+.|.+..+|..+..  +.+|+.|.+..|++..+|..+..+ .|..||++.|+|..||..
T Consensus       153 Nkl~~lp~~ig~~~tl~~ld~s~nei~slpsql~~--l~slr~l~vrRn~l~~lp~El~~L-pLi~lDfScNkis~iPv~  229 (722)
T KOG0532|consen  153 NKLTSLPEEIGLLPTLAHLDVSKNEIQSLPSQLGY--LTSLRDLNVRRNHLEDLPEELCSL-PLIRLDFSCNKISYLPVD  229 (722)
T ss_pred             CccccCCcccccchhHHHhhhhhhhhhhchHHhhh--HHHHHHHHHhhhhhhhCCHHHhCC-ceeeeecccCceeecchh
Confidence            88888887777777888888888888888877765  778888888888888888777644 577888888888888876


Q ss_pred             hhcCCCCCcEEEccCCcCCCCCCC
Q psy12423        257 FLQNSSKLKVLNISKNCLKMLPSL  280 (567)
Q Consensus       257 ~l~~l~~L~~L~Ls~N~l~~ip~~  280 (567)
                      + .++..|++|-|.+|+|++-|..
T Consensus       230 f-r~m~~Lq~l~LenNPLqSPPAq  252 (722)
T KOG0532|consen  230 F-RKMRHLQVLQLENNPLQSPPAQ  252 (722)
T ss_pred             h-hhhhhheeeeeccCCCCCChHH
Confidence            4 6788888888888888876654

>KOG1259|consensus

Probab=99.22  E-value=2.4e-12  Score=122.36  Aligned_cols=194  Identities=21%  Similarity=0.212  Sum_probs=127.7

Q ss_pred             CCccEEEecCCCCCCccc-cCCCCCccEEEccCCCCCCCC-CcccccCcEEEccc-----CcccceecCCCCCcEEEcCC
Q psy12423         82 GELTSVNLRSNQLKGTII-LGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSR-----NQLKTLVLNGSSLISVIAGN  154 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~-----n~l~~l~~~~~~L~~L~l~~  154 (567)
                      .+|+.+.++.+.-..+.. ...-|.|+++.+.+..+...+ +--...+..+..+.     -........+..|+++++++
T Consensus       214 ~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~  293 (490)
T KOG1259|consen  214 RNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLPETILADPSGSEPSTSNGSALVSADTWQELTELDLSG  293 (490)
T ss_pred             hhhheeeeeccchhheeceeecCchhheeeeecccccccccccchhhhcCccCCCCCccCCceEEecchHhhhhhccccc
Confidence            466666666664443321 112356777766665544322 11111111111110     01112223456777778888


Q ss_pred             CccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh
Q psy12423        155 NKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL  233 (567)
Q Consensus       155 n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  233 (567)
                      |.|+.+....- .+.++.|++|+|.|..+.. +..+++|+.|||++|.++.+..+-..  +.+++.|.|+.|.|..+.. 
T Consensus       294 N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K--LGNIKtL~La~N~iE~LSG-  369 (490)
T KOG1259|consen  294 NLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLK--LGNIKTLKLAQNKIETLSG-  369 (490)
T ss_pred             cchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhh--hcCEeeeehhhhhHhhhhh-
Confidence            87777665544 7788888888888887755 77888888888888888877665544  7888889998888877633 


Q ss_pred             hhCCCCCcEEEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        234 IRQIASLKYLFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       234 ~~~l~~L~~L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      +..+-+|..||+++|+|..+.. ..++++|.|+.+.|.+|++..+|+
T Consensus       370 L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~vd  416 (490)
T KOG1259|consen  370 LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSVD  416 (490)
T ss_pred             hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccch
Confidence            5677788899999999886554 235789999999999999998885

>KOG3207|consensus

Probab=99.20  E-value=2e-12  Score=128.86  Aligned_cols=174  Identities=25%  Similarity=0.313  Sum_probs=106.2

Q ss_pred             CCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccce------ecCCCCCcEEEcCCCccccccCCCC---CCc
Q psy12423        102 NYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTL------VLNGSSLISVIAGNNKLQSLIVSPR---PAR  168 (567)
Q Consensus       102 ~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l------~~~~~~L~~L~l~~n~l~~~~~~~~---~~~  168 (567)
                      ++.+|+.+.|.++.+....    ...|++++.|+|+.|-+...      ...+++|+.|+++.|++........   +++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            3445555555555544432    23455555555555544432      2345566666666665544333322   667


Q ss_pred             ccEEecccCCCC--CcccccCCCcCCcEEECcCCCCC---CCChhhhhccCCCccEEECCCCCCCCCc--hhhhCCCCCc
Q psy12423        169 LQHLDISYNELE--SLPDWIDTCPELETIFASHNRIT---QLPSQFFCRELGKLHTLQLSFNRLTSLP--SLIRQIASLK  241 (567)
Q Consensus       169 L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~---~l~~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~  241 (567)
                      |+.|.|+.|.++  ++...+..+|+|+.|+|..|..-   ..+..+    +..|++|||++|++..++  .....++.|.
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i----~~~L~~LdLs~N~li~~~~~~~~~~l~~L~  274 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKI----LQTLQELDLSNNNLIDFDQGYKVGTLPGLN  274 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhh----hhHHhhccccCCcccccccccccccccchh
Confidence            888888888877  34444566788888888888422   333333    557888888888877766  3457778888


Q ss_pred             EEEccCCCCCCC--chh----hhcCCCCCcEEEccCCcCCCCCC
Q psy12423        242 YLFLQSNSINIL--PQL----FLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       242 ~L~Ls~N~l~~l--~~~----~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      .|+++.|.|.++  |+.    ....+++|++|+++.|++...+.
T Consensus       275 ~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s  318 (505)
T KOG3207|consen  275 QLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS  318 (505)
T ss_pred             hhhccccCcchhcCCCccchhhhcccccceeeecccCccccccc
Confidence            888888887743  221    12456788888888888876553

>KOG1379|consensus

Probab=99.18  E-value=7.6e-10  Score=106.42  Aligned_cols=153  Identities=19%  Similarity=0.304  Sum_probs=99.2

Q ss_pred             chhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeec--CccceEEEEEEEecCceEE
Q psy12423        313 GDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLH--PVTHRYMLHIASVGEAKAI  390 (567)
Q Consensus       313 ~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~--~~~~~~~l~~a~~Gdsr~~  390 (567)
                      +..+..+....-....+.......|...+.+++.....    .....-+++|+|.+...  ..    ++++||+|||-..
T Consensus       123 g~fS~eLM~~ce~~v~~~~~~~~~P~~lL~~ay~~l~~----~~~~~vGSSTAcI~~l~~~~~----~Lh~aNLGDSGF~  194 (330)
T KOG1379|consen  123 GAFSRELMSNCERLVQNSDFNPSDPVNLLEKAYAELKS----QKVPIVGSSTACILALDRENG----KLHTANLGDSGFL  194 (330)
T ss_pred             HHHHHHHHHHHHHHhcccccCCCChHHHHHHHHHHHhh----cCCCCCCcceeeeeeeecCCC----eEEEeeccCcceE
Confidence            44455555555555544444445677787777764433    32233456777777666  44    8999999999999


Q ss_pred             EEeCCeeeeCC----CCCC--CCCCCCCCCCCCCccC---CCceEEEEecCCCeEEEEEcCCCC----------------
Q psy12423        391 LCRQAGSLTFT----HAPT--LSPPVPPQGSCPLSFP---DPHVTEVMLHENDHFLILANKSVS----------------  445 (567)
Q Consensus       391 l~r~~~~~~lt----~dh~--~~r~~g~~~~~~~~~~---~p~v~~~~l~~~d~~lil~sDGl~----------------  445 (567)
                      ++|+|+.+.-|    |..+  ..=+.+.-++..++.-   .-|++.+.+.++ |.+|+||||||                
T Consensus       195 VvR~G~vv~~S~~Q~H~FN~PyQLs~~p~~~~~~~~d~p~~ad~~~~~v~~G-DvIilATDGlfDNl~e~~Il~il~~~~  273 (330)
T KOG1379|consen  195 VVREGKVVFRSPEQQHYFNTPYQLSSPPEGYSSYISDVPDSADVTSFDVQKG-DVIILATDGLFDNLPEKEILSILKGLD  273 (330)
T ss_pred             EEECCEEEEcCchheeccCCceeeccCCccccccccCCccccceEEEeccCC-CEEEEecccccccccHHHHHHHHHHhh
Confidence            99999876544    2222  1111222111111222   347788898887 46779999999                


Q ss_pred             -----CHHHHHHHHHHHHHH----------------------cCC-CCCcEEEEEEe
Q psy12423        446 -----EPVLAAKRIQDLAQS----------------------YGS-EDNLSVLVLRF  474 (567)
Q Consensus       446 -----~~~~~a~~l~~~a~~----------------------~g~-~dnit~~vv~~  474 (567)
                           +++..|+++.+.|..                      +|+ .|+|||+|..+
T Consensus       274 ~~~~~~lq~~A~~ia~~Ar~ls~d~~~~SPFA~~Ar~~g~~~~gGK~DdITvvls~v  330 (330)
T KOG1379|consen  274 ARGNLDLQVTAQKIAEKARELSRDPKFQSPFAQAAREHGFKAYGGKPDDITVVLSSV  330 (330)
T ss_pred             ccccccHHHHHHHHHHHHHHhccCcCcCChHHHHHHHhCcccCCCCcccEEEEEecC
Confidence                 678899999988876                      355 79999998753

>KOG1259|consensus

Probab=99.17  E-value=6e-12  Score=119.69  Aligned_cols=221  Identities=21%  Similarity=0.207  Sum_probs=155.1

Q ss_pred             CCCCCCccEEEecCCC-------CCC-cc--ccCCCCCccEEEccCCCCCCC-CCc-ccccCcEEEcccCcccceecCC-
Q psy12423         78 PEVKGELTSVNLRSNQ-------LKG-TI--ILGNYGNLTTLDVSENSIESL-DLG-ALNRLESIKCSRNQLKTLVLNG-  144 (567)
Q Consensus        78 ~~~l~~L~~L~Ls~n~-------l~~-~~--~l~~l~~L~~L~L~~n~l~~~-~~~-~l~~L~~L~ls~n~l~~l~~~~-  144 (567)
                      +..+..|+.|.+++..       |.. ..  .+.-+.+|+.+.++.+.-..+ .+. .-+.|.++......+...+.-. 
T Consensus       178 ldf~~~l~~l~vs~~~~p~~~sni~~~~l~f~l~~f~~l~~~~~s~~~~~~i~~~~~~kptl~t~~v~~s~~~~~~~l~p  257 (490)
T KOG1259|consen  178 LDFCTQLVALVVTPVKDPIDRSNIIPNRLSFNLNAFRNLKTLKFSALSTENIVDIELLKPTLQTICVHNTTIQDVPSLLP  257 (490)
T ss_pred             HHhhhheeEEEecCCCCCCccccccccccccchHHhhhhheeeeeccchhheeceeecCchhheeeeecccccccccccc
Confidence            3445678888776542       111 11  244567888888888764443 121 2256777777766555443222 


Q ss_pred             -CCCcEEEcCCCc-cccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEE
Q psy12423        145 -SSLISVIAGNNK-LQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTL  220 (567)
Q Consensus       145 -~~L~~L~l~~n~-l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L  220 (567)
                       ..+.....+.-. .++......  ...|++||||+|.|+.+.+.+.-.|.++.|++++|.|..+..-.+   +++|+.|
T Consensus       258 e~~~~D~~~~E~~t~~G~~~~~~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~nLa~---L~~L~~L  334 (490)
T KOG1259|consen  258 ETILADPSGSEPSTSNGSALVSADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQNLAE---LPQLQLL  334 (490)
T ss_pred             hhhhcCccCCCCCccCCceEEecchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehhhhh---cccceEe
Confidence             222222111111 111111111  457999999999999999999999999999999999998877443   8999999


Q ss_pred             ECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC--CCcCCccceeecccCCccc
Q psy12423        221 QLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS--LQKGFYLLNISQLRLPGFC  298 (567)
Q Consensus       221 ~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~--~~~~~~~L~~~~l~~~~~~  298 (567)
                      |||+|.++.+..+-..+-+.+.|.|++|.|..+..  +.++-+|..||+++|+|..+..  .+++++-|....+.+|+..
T Consensus       335 DLS~N~Ls~~~Gwh~KLGNIKtL~La~N~iE~LSG--L~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  335 DLSGNLLAECVGWHLKLGNIKTLKLAQNKIETLSG--LRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             ecccchhHhhhhhHhhhcCEeeeehhhhhHhhhhh--hHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            99999999988888888999999999999998865  5688899999999999986553  4667888888888888887


Q ss_pred             cCCcc
Q psy12423        299 NSDAL  303 (567)
Q Consensus       299 ~~~~~  303 (567)
                      ....+
T Consensus       413 ~~vdY  417 (490)
T KOG1259|consen  413 GSVDY  417 (490)
T ss_pred             ccchH
Confidence            66443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.15  E-value=4.9e-11  Score=108.89  Aligned_cols=121  Identities=28%  Similarity=0.406  Sum_probs=44.4

Q ss_pred             CCccccccCCCCCCcccEEecccCCCCCcccccC-CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423        154 NNKLQSLIVSPRPARLQHLDISYNELESLPDWID-TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS  232 (567)
Q Consensus       154 ~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~  232 (567)
                      .+.+...+...-+..+++|+|.+|.|+.|.. ++ .+.+|+.|+|++|.|+.++.-.  . ++.|+.|++++|.|+.++.
T Consensus         6 ~~~i~~~~~~~n~~~~~~L~L~~n~I~~Ie~-L~~~l~~L~~L~Ls~N~I~~l~~l~--~-L~~L~~L~L~~N~I~~i~~   81 (175)
T PF14580_consen    6 ANMIEQIAQYNNPVKLRELNLRGNQISTIEN-LGATLDKLEVLDLSNNQITKLEGLP--G-LPRLKTLDLSNNRISSISE   81 (175)
T ss_dssp             ------------------------------S---TT-TT--EEE-TTS--S--TT-------TT--EEE--SS---S-CH
T ss_pred             ccccccccccccccccccccccccccccccc-hhhhhcCCCEEECCCCCCccccCcc--C-hhhhhhcccCCCCCCcccc
Confidence            3334443333335578899999999988753 54 5788999999999999886422  2 8899999999999999876


Q ss_pred             hh-hCCCCCcEEEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCC
Q psy12423        233 LI-RQIASLKYLFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLP  278 (567)
Q Consensus       233 ~~-~~l~~L~~L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip  278 (567)
                      .+ ..+++|++|+|++|+|..+.. ..+..+++|+.|+|.+|+++.-+
T Consensus        82 ~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~  129 (175)
T PF14580_consen   82 GLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKK  129 (175)
T ss_dssp             HHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGST
T ss_pred             chHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchh
Confidence            55 468999999999999886544 34578899999999999887554

>KOG3207|consensus

Probab=99.14  E-value=9.4e-12  Score=124.19  Aligned_cols=198  Identities=22%  Similarity=0.211  Sum_probs=155.2

Q ss_pred             CCCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCC-----CcccccCcEEEcccCccccee-----cCCC
Q psy12423         79 EVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLD-----LGALNRLESIKCSRNQLKTLV-----LNGS  145 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~L~~L~ls~n~l~~l~-----~~~~  145 (567)
                      .++.+|+.+.|.++.+....   ....+++++.|||+.|-+....     ...+++|+.|+++.|.+....     ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            35778999999998877554   4677999999999999887642     567899999999999987544     3468


Q ss_pred             CCcEEEcCCCccccccCCCC---CCcccEEecccCC-CCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423        146 SLISVIAGNNKLQSLIVSPR---PARLQHLDISYNE-LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ  221 (567)
Q Consensus       146 ~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~-l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~  221 (567)
                      .|+.|.++.|.++.-.....   +++|+.|+|..|. +..-.....-+..|+.|+|++|.+-..+.....+.++.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            99999999999986554444   8999999999995 3322223455678999999999998887554444489999999


Q ss_pred             CCCCCCCC--Cchh-----hhCCCCCcEEEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCC
Q psy12423        222 LSFNRLTS--LPSL-----IRQIASLKYLFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKM  276 (567)
Q Consensus       222 Ls~N~l~~--lp~~-----~~~l~~L~~L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~  276 (567)
                      ++.+.|.+  +|+.     ...+++|++|++..|+|.+++. .-+..+++|+.|.+..|.|+.
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~  340 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK  340 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence            99999987  3443     3568899999999999987665 223467888888888998874

>KOG0531|consensus

Probab=99.11  E-value=9.2e-12  Score=131.47  Aligned_cols=189  Identities=26%  Similarity=0.272  Sum_probs=137.5

Q ss_pred             CCCccEEEecCCCCCCccc-cCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCcccceec--CCCCCcEEEcCCCc
Q psy12423         81 KGELTSVNLRSNQLKGTII-LGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLVL--NGSSLISVIAGNNK  156 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~-l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~~--~~~~L~~L~l~~n~  156 (567)
                      +.+|..|++..|+|..... +..+++|++|++++|.|+.+ ++..++.|+.|++++|.|..+..  .+..|+.+++++|.
T Consensus        94 ~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~  173 (414)
T KOG0531|consen   94 LKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNR  173 (414)
T ss_pred             ccceeeeeccccchhhcccchhhhhcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcch
Confidence            4577777888887777665 77777888888888887776 46667778888888887777653  26777888888888


Q ss_pred             cccccC--CCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCC--CccEEECCCCCCCCCch
Q psy12423        157 LQSLIV--SPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG--KLHTLQLSFNRLTSLPS  232 (567)
Q Consensus       157 l~~~~~--~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~--~L~~L~Ls~N~l~~lp~  232 (567)
                      +..+..  ...+.+++.+++.+|.+..+. ++..+..+..+++..|.++.+.....   +.  .|+.+++++|.+..++.
T Consensus       174 i~~ie~~~~~~~~~l~~l~l~~n~i~~i~-~~~~~~~l~~~~l~~n~i~~~~~l~~---~~~~~L~~l~l~~n~i~~~~~  249 (414)
T KOG0531|consen  174 IVDIENDELSELISLEELDLGGNSIREIE-GLDLLKKLVLLSLLDNKISKLEGLNE---LVMLHLRELYLSGNRISRSPE  249 (414)
T ss_pred             hhhhhhhhhhhccchHHHhccCCchhccc-chHHHHHHHHhhcccccceeccCccc---chhHHHHHHhcccCccccccc
Confidence            877777  244678888888888887663 34455566666888888876644322   22  37888888888888766


Q ss_pred             hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        233 LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       233 ~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      .+..+..+..|++.+|++..+..  +...+.+..+.+..|++.
T Consensus       250 ~~~~~~~l~~l~~~~n~~~~~~~--~~~~~~~~~~~~~~~~~~  290 (414)
T KOG0531|consen  250 GLENLKNLPVLDLSSNRISNLEG--LERLPKLSELWLNDNKLA  290 (414)
T ss_pred             cccccccccccchhhcccccccc--ccccchHHHhccCcchhc
Confidence            67778888888888888886654  345667777777888766

>KOG1909|consensus

Probab=99.11  E-value=9.7e-12  Score=120.97  Aligned_cols=190  Identities=21%  Similarity=0.205  Sum_probs=127.6

Q ss_pred             cCCCCCccEEEccCCCCCCCC-------CcccccCcEEEcccCcccceecC--CCCCcEEEcCCCccccccCCCCCCccc
Q psy12423        100 LGNYGNLTTLDVSENSIESLD-------LGALNRLESIKCSRNQLKTLVLN--GSSLISVIAGNNKLQSLIVSPRPARLQ  170 (567)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~~L~ls~n~l~~l~~~--~~~L~~L~l~~n~l~~~~~~~~~~~L~  170 (567)
                      +...+.|++|+||.|.+..-.       +.++..|++|.|.+|.+......  ...|..|.  .++.     ....+.|+
T Consensus        88 L~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~--~~kk-----~~~~~~Lr  160 (382)
T KOG1909|consen   88 LLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELA--VNKK-----AASKPKLR  160 (382)
T ss_pred             HhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHH--HHhc-----cCCCcceE
Confidence            455668888888888876531       44566777777777776543211  01122221  1111     11156899


Q ss_pred             EEecccCCCCCc-----ccccCCCcCCcEEECcCCCCCC--C--ChhhhhccCCCccEEECCCCCCCC-----CchhhhC
Q psy12423        171 HLDISYNELESL-----PDWIDTCPELETIFASHNRITQ--L--PSQFFCRELGKLHTLQLSFNRLTS-----LPSLIRQ  236 (567)
Q Consensus       171 ~L~Ls~n~l~~l-----p~~l~~l~~L~~L~Ls~N~l~~--l--~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~  236 (567)
                      ++....|++..-     ...|...+.|+.+.+..|.|..  +  -...+.. +++|+.|||..|-++.     +...+..
T Consensus       161 v~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~-~~~LevLdl~DNtft~egs~~LakaL~s  239 (382)
T KOG1909|consen  161 VFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEH-CPHLEVLDLRDNTFTLEGSVALAKALSS  239 (382)
T ss_pred             EEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHh-CCcceeeecccchhhhHHHHHHHHHhcc
Confidence            999999999844     3457788999999999999873  2  2222333 8999999999999884     4556788


Q ss_pred             CCCCcEEEccCCCCCCCchh-----hhcCCCCCcEEEccCCcCC-----CCCCCCcCCccceeecccCCcc
Q psy12423        237 IASLKYLFLQSNSINILPQL-----FLQNSSKLKVLNISKNCLK-----MLPSLQKGFYLLNISQLRLPGF  297 (567)
Q Consensus       237 l~~L~~L~Ls~N~l~~l~~~-----~l~~l~~L~~L~Ls~N~l~-----~ip~~~~~~~~L~~~~l~~~~~  297 (567)
                      +++|+.|++++|.+..-...     +-...|+|+.|.|.+|.|+     .+-..+...+.|..+.+..|.+
T Consensus       240 ~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  240 WPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             cchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            89999999999999853332     2346899999999999997     1111122344555556666655

>KOG0531|consensus

Probab=99.03  E-value=4.9e-11  Score=125.99  Aligned_cols=235  Identities=21%  Similarity=0.294  Sum_probs=180.7

Q ss_pred             cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK   81 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l   81 (567)
                      +.+++..|.|..+-..+..+++|+.|++.+|.|..+...+                                     ..+
T Consensus        75 ~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l-------------------------------------~~~  117 (414)
T KOG0531|consen   75 KELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLL-------------------------------------SSL  117 (414)
T ss_pred             Hhhccchhhhhhhhcccccccceeeeeccccchhhcccch-------------------------------------hhh
Confidence            4566778888876566888999999999999999876421                                     335


Q ss_pred             CCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceec----CCCCCcEEEcCCCc
Q psy12423         82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAGNNK  156 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~~n~  156 (567)
                      ++|++|+|++|.|+....+..++.|+.|++++|.|..+. +..+..|+.+++++|.+..+..    .+.+++.+.+..|.
T Consensus       118 ~~L~~L~ls~N~I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  118 VNLQVLDLSFNKITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             hcchheeccccccccccchhhccchhhheeccCcchhccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc
Confidence            689999999999998888888888999999999999875 6668999999999999887654    46788899999999


Q ss_pred             cccccCCCCCCcccEEecccCCCCCcccccCCCcC--CcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh
Q psy12423        157 LQSLIVSPRPARLQHLDISYNELESLPDWIDTCPE--LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI  234 (567)
Q Consensus       157 l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~--L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~  234 (567)
                      +..+.....+..+..+++..|.++.+-+ +..+..  |+.+++++|.+..++..+-.  +..+..|++..|++..+.. +
T Consensus       198 i~~i~~~~~~~~l~~~~l~~n~i~~~~~-l~~~~~~~L~~l~l~~n~i~~~~~~~~~--~~~l~~l~~~~n~~~~~~~-~  273 (414)
T KOG0531|consen  198 IREIEGLDLLKKLVLLSLLDNKISKLEG-LNELVMLHLRELYLSGNRISRSPEGLEN--LKNLPVLDLSSNRISNLEG-L  273 (414)
T ss_pred             hhcccchHHHHHHHHhhcccccceeccC-cccchhHHHHHHhcccCccccccccccc--cccccccchhhcccccccc-c
Confidence            8888776666677777889998886633 233333  89999999999987533332  7789999999998887533 4


Q ss_pred             hCCCCCcEEEccCCCCCC----CchhhhcCCCCCcEEEccCCcCCCC
Q psy12423        235 RQIASLKYLFLQSNSINI----LPQLFLQNSSKLKVLNISKNCLKML  277 (567)
Q Consensus       235 ~~l~~L~~L~Ls~N~l~~----l~~~~l~~l~~L~~L~Ls~N~l~~i  277 (567)
                      ...+.+..+.+..|.+..    .........+.+..+.+.+|.+...
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (414)
T KOG0531|consen  274 ERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKI  320 (414)
T ss_pred             cccchHHHhccCcchhcchhhhhccccccccccccccccccCccccc
Confidence            455677777788887662    1222235678888889999988743

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.80  E-value=2.5e-09  Score=80.33  Aligned_cols=60  Identities=32%  Similarity=0.485  Sum_probs=47.2

Q ss_pred             CCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcC
Q psy12423        215 GKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL  274 (567)
Q Consensus       215 ~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l  274 (567)
                      ++|++|++++|+|+.+|. .|..+++|++|++++|.|+.+++..|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            467777788777777764 567788888888888888888888888888888888888875

...

>KOG4579|consensus

Probab=98.73  E-value=1.2e-09  Score=92.85  Aligned_cols=131  Identities=23%  Similarity=0.276  Sum_probs=100.2

Q ss_pred             cccEEecccCCCCCcccc---cCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEE
Q psy12423        168 RLQHLDISYNELESLPDW---IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF  244 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp~~---l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  244 (567)
                      .+..++|+.|.+..+++.   +.....|+..+|++|.+..+|..+... ++.++.|+|++|.|+++|..+..++.|+.|+
T Consensus        28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~k-f~t~t~lNl~~neisdvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIK-FPTATTLNLANNEISDVPEELAAMPALRSLN  106 (177)
T ss_pred             HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhc-cchhhhhhcchhhhhhchHHHhhhHHhhhcc
Confidence            456788888888766653   455567788899999999998887654 7789999999999999999999999999999


Q ss_pred             ccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        245 LQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       245 Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      ++.|.+...|.-++. +.+|-.|+..+|.+..||-..+--...-+..++++++.+.
T Consensus       107 l~~N~l~~~p~vi~~-L~~l~~Lds~~na~~eid~dl~~s~~~al~~lgnepl~~~  161 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAP-LIKLDMLDSPENARAEIDVDLFYSSLPALIKLGNEPLGDE  161 (177)
T ss_pred             cccCccccchHHHHH-HHhHHHhcCCCCccccCcHHHhccccHHHHHhcCCccccc
Confidence            999999988887764 8888999999999998886533222333334455555443

>smart00331 PP2C_SIG Sigma factor PP2C-like phosphatases

Probab=98.68  E-value=6.2e-07  Score=84.32  Aligned_cols=130  Identities=21%  Similarity=0.161  Sum_probs=82.2

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEE
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLH  380 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~  380 (567)
                      ..++.+.|+++.+..+......+...+.+.......+.+    .+..+++.+..... ....++++.+.+.+...  +++
T Consensus        30 ~~~~~v~Dg~G~G~~aa~~s~~~~~~~~~~~~~~~~~~~----~l~~~n~~l~~~~~-~~~~~T~~~~~id~~~~--~l~  102 (193)
T smart00331       30 RLLIAIADVMGKGLAAALAMSMARSALRTLLSEGISLSQ----ILERLNRAIYENGE-DGMFATLFLALYDFAGG--TLS  102 (193)
T ss_pred             eEEEEEEecCCCChHHHHHHHHHHHHHHHHhhcCCCHHH----HHHHHHHHHHhcCC-CCcEEEEEEEEEECCCC--EEE
Confidence            456788999988877777777766665544332223333    34455665554422 22334444444322212  789


Q ss_pred             EEEecCceEEEEe-CCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC
Q psy12423        381 IASVGEAKAILCR-QAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS  445 (567)
Q Consensus       381 ~a~~Gdsr~~l~r-~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~  445 (567)
                      ++++||+|+|+++ +++..+.+.+  .++.+|...     ..++++..+.+.++|. |+++|||||
T Consensus       103 ~~~~Gd~~~~~~~~~~~~~~~~~~--~~~~lG~~~-----~~~~~~~~~~l~~gd~-l~l~TDGl~  160 (193)
T smart00331      103 YANAGHSPPYLLRADGGLVEDLDD--LGAPLGLEP-----DVEVDVRELTLEPGDL-LLLYTDGLT  160 (193)
T ss_pred             EEeCCCCceEEEECCCCeEEEcCC--CCceeeeCC-----CCcceeEEEeeCCCCE-EEEECCCcc
Confidence            9999999999999 6666666554  345666433     2347788888888765 558999999

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.68  E-value=1.1e-08  Score=76.79  Aligned_cols=58  Identities=40%  Similarity=0.592  Sum_probs=34.0

Q ss_pred             cccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC
Q psy12423        168 RLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR  226 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~  226 (567)
                      +|++|++++|+++.+| .+|..+++|++|++++|.++.+++..|.+ +++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~-l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSN-LPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTT-STTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcC-CCCCCEEeCcCCc
Confidence            4556666666666554 35555666666666666666655555554 5556666655554

...

>KOG1859|consensus

Probab=98.67  E-value=4.9e-10  Score=118.17  Aligned_cols=127  Identities=29%  Similarity=0.375  Sum_probs=68.2

Q ss_pred             cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh-hCCCCCcEEEcc
Q psy12423        168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQ  246 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~Ls  246 (567)
                      .|...++++|.+..+...+.-++.|+.|+|++|+++.... +..  ++.|++|||++|.++.+|..- .++ .|..|+|+
T Consensus       165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~~-Lr~--l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVDN-LRR--LPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhHH-HHh--cccccccccccchhccccccchhhh-hheeeeec
Confidence            4555556666665555555555666666666666665542 211  556666666666666555422 222 26666666


Q ss_pred             CCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC--CcCCccceeecccCCccccC
Q psy12423        247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL--QKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       247 ~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~--~~~~~~L~~~~l~~~~~~~~  300 (567)
                      +|.++.+-.  +.++.+|+.||+++|-|......  ...+..|..+.+.+|+.|+.
T Consensus       241 nN~l~tL~g--ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~  294 (1096)
T KOG1859|consen  241 NNALTTLRG--IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA  294 (1096)
T ss_pred             ccHHHhhhh--HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence            666665544  24566666666666655533321  11334455555555555544

>PLN03150 hypothetical protein; Provisional

Probab=98.60  E-value=1.2e-07  Score=104.91  Aligned_cols=89  Identities=25%  Similarity=0.328  Sum_probs=61.2

Q ss_pred             CcEEECcCCCCC-CCChhhhhccCCCccEEECCCCCCC-CCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEc
Q psy12423        192 LETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNI  269 (567)
Q Consensus       192 L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~L  269 (567)
                      ++.|+|++|.+. .+|..+..  +++|+.|+|++|.+. .+|..+..+++|+.|+|++|.++...+..+.++++|+.|+|
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~--L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~L  497 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISK--LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNL  497 (623)
T ss_pred             EEEEECCCCCccccCCHHHhC--CCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEEC
Confidence            667777777776 45554433  777777777777776 36767777777777777777777544444567777777777


Q ss_pred             cCCcCC-CCCCCCc
Q psy12423        270 SKNCLK-MLPSLQK  282 (567)
Q Consensus       270 s~N~l~-~ip~~~~  282 (567)
                      ++|+++ .+|..+.
T Consensus       498 s~N~l~g~iP~~l~  511 (623)
T PLN03150        498 NGNSLSGRVPAALG  511 (623)
T ss_pred             cCCcccccCChHHh
Confidence            777776 6665543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.55  E-value=1.5e-08  Score=95.71  Aligned_cols=195  Identities=20%  Similarity=0.205  Sum_probs=105.0

Q ss_pred             CCCCCCccEEEecCCCCCCcc------ccCCCCCccEEEccCCCCCCCCCcccc-cCcEEEcccCcccceecCCCCCcEE
Q psy12423         78 PEVKGELTSVNLRSNQLKGTI------ILGNYGNLTTLDVSENSIESLDLGALN-RLESIKCSRNQLKTLVLNGSSLISV  150 (567)
Q Consensus        78 ~~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~~~~~l~-~L~~L~ls~n~l~~l~~~~~~L~~L  150 (567)
                      +.++|+|+.++||.|.+....      .++.-+.|++|.+++|.+..+.-+... .|.+|  ..|   .-..+.+.|+.+
T Consensus        88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--a~n---KKaa~kp~Le~v  162 (388)
T COG5238          88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--AYN---KKAADKPKLEVV  162 (388)
T ss_pred             HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--HHH---hhhccCCCceEE
Confidence            345677777777777766432      345556777777777766554211000 00000  000   000123455555


Q ss_pred             EcCCCccccccCCCC------CCcccEEecccCCCCC--c----ccccCCCcCCcEEECcCCCCCCCChhh----hhccC
Q psy12423        151 IAGNNKLQSLIVSPR------PARLQHLDISYNELES--L----PDWIDTCPELETIFASHNRITQLPSQF----FCREL  214 (567)
Q Consensus       151 ~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~~--l----p~~l~~l~~L~~L~Ls~N~l~~l~~~~----~~~~l  214 (567)
                      .+..|++..-+...+      -..|+.+.+..|.|..  +    -..+..+.+|+.|+|..|.++......    ... +
T Consensus       163 icgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~-W  241 (388)
T COG5238         163 ICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCE-W  241 (388)
T ss_pred             EeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcc-c
Confidence            555555544332221      2356677777776651  1    112345667777777777776433222    222 5


Q ss_pred             CCccEEECCCCCCCC--Cchhh-----hCCCCCcEEEccCCCCCC-------CchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423        215 GKLHTLQLSFNRLTS--LPSLI-----RQIASLKYLFLQSNSINI-------LPQLFLQNSSKLKVLNISKNCLKMLP  278 (567)
Q Consensus       215 ~~L~~L~Ls~N~l~~--lp~~~-----~~l~~L~~L~Ls~N~l~~-------l~~~~l~~l~~L~~L~Ls~N~l~~ip  278 (567)
                      +.|++|.+..|-++.  ....+     ...++|..|-..+|.+..       ++.-.-.++|-|..|.+.+|+|+...
T Consensus       242 ~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E~~  319 (388)
T COG5238         242 NLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKELA  319 (388)
T ss_pred             chhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchhHH
Confidence            567777777776663  21111     235677777777776541       22222356778888888899988554

>KOG1859|consensus

Probab=98.55  E-value=1.1e-09  Score=115.49  Aligned_cols=183  Identities=22%  Similarity=0.229  Sum_probs=121.0

Q ss_pred             CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhcccc----ccccCCcccccCCCCCCCCccEEEec
Q psy12423         15 PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDF----EQDEDGIIVERREPEVKGELTSVNLR   90 (567)
Q Consensus        15 p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~l~~L~~L~Ls   90 (567)
                      |-.+..+..|++|.|.++.|...- ++..--..|+.+++.+...-....+    ....++.++        ..|...+.+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~-GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~W--------n~L~~a~fs  172 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAK-GLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVW--------NKLATASFS  172 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhh-hhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhh--------hhHhhhhcc
Confidence            335667889999999999988622 1111112333343333222111111    111111111        267788888


Q ss_pred             CCCCCCcc-ccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee---cCCCCCcEEEcCCCccccccCCCC
Q psy12423         91 SNQLKGTI-ILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV---LNGSSLISVIAGNNKLQSLIVSPR  165 (567)
Q Consensus        91 ~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~---~~~~~L~~L~l~~n~l~~~~~~~~  165 (567)
                      +|.+.... .+.-++.|+.|+|++|+++... +..+++|++|||+.|.+..++   .....|..|.+++|.++.+.....
T Consensus       173 yN~L~~mD~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~  252 (1096)
T KOG1859|consen  173 YNRLVLMDESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIEN  252 (1096)
T ss_pred             hhhHHhHHHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHh
Confidence            88887655 6677788999999999988874 667888999999999888766   334568888888888887766666


Q ss_pred             CCcccEEecccCCCCCcc--cccCCCcCCcEEECcCCCCCCCC
Q psy12423        166 PARLQHLDISYNELESLP--DWIDTCPELETIFASHNRITQLP  206 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~N~l~~l~  206 (567)
                      +.+|+.||+++|-|....  ..+..+..|+.|+|.+|.+..-|
T Consensus       253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p  295 (1096)
T KOG1859|consen  253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAP  295 (1096)
T ss_pred             hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCH
Confidence            788888888888776432  23556778888888888776433

>PF07228 SpoIIE: Stage II sporulation protein E (SpoIIE); InterPro: IPR001932 This domain is found in protein phosphatase 2C, as well as other proteins eg

Probab=98.50  E-value=5.6e-06  Score=77.74  Aligned_cols=156  Identities=20%  Similarity=0.208  Sum_probs=89.7

Q ss_pred             eeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEEe
Q psy12423        305 GIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASV  384 (567)
Q Consensus       305 ~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~~  384 (567)
                      .+.|..+.+..+......+...+.........+.+.    ...+|+.+..........++++.+...+...  +++++++
T Consensus         8 ~v~D~~GhG~~aa~~~~~~~~~~~~~~~~~~~p~~~----l~~ln~~l~~~~~~~~~~~t~~~~~~d~~~~--~l~~~~a   81 (193)
T PF07228_consen    8 IVGDVSGHGVSAALLSAALASAIRELLDEGLDPEEL----LEALNRRLYRDLKGDNRYATACYAIIDPETG--TLTYANA   81 (193)
T ss_dssp             EEEEESSSSHHHHHHHHHHHHHHHHHHHTTTSHHHH----HHHHHHHHHHHTTTTSTTEEEEEEEEETTTT--EEEEEEE
T ss_pred             EEEEecCCCHHHHHHHHHHHHHHHHHHHcCCCHHHH----HHHHHHHHHHHhhhccccceEEEEEecccce--EEEEeCC
Confidence            345555555445544444444444333222223333    3444555533323332344555455444333  7899999


Q ss_pred             cCceEEEEeCCe--eeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC-----------------
Q psy12423        385 GEAKAILCRQAG--SLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS-----------------  445 (567)
Q Consensus       385 Gdsr~~l~r~~~--~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~-----------------  445 (567)
                      |+..++++|.++  ...+......   +|...     ..++...++.+.++| .|+++||||+                 
T Consensus        82 G~~~~l~~~~~~~~~~~~~~~~~~---lG~~~-----~~~~~~~~~~l~~gd-~l~l~TDGl~e~~~~~~~~~~~~~~~~  152 (193)
T PF07228_consen   82 GHPPPLLLRPGGREIEQLESEGPP---LGIFE-----DIDYQEQEIQLEPGD-RLLLYTDGLFEALNEDGEFFGEERLLE  152 (193)
T ss_dssp             SSSEEEEEETTCTEEEEETCSSBB---CSSSC-----TTCEEEEEEE--TTE-EEEEECHHHCTTTCHHCHHCCCHHHHH
T ss_pred             CCCCEEEEeccccceeecccCccc---eeeec-----cccccceEEEecccc-EEEEeCCChhhccCCccchhHHHHHHH
Confidence            999999999833  3333322222   45322     134566677777765 5668999998                 


Q ss_pred             --------CHHHHHHHHHHHHHHc---CCCCCcEEEEEEeC
Q psy12423        446 --------EPVLAAKRIQDLAQSY---GSEDNLSVLVLRFQ  475 (567)
Q Consensus       446 --------~~~~~a~~l~~~a~~~---g~~dnit~~vv~~~  475 (567)
                              ++++.++.+++.+...   ...|++|++|++++
T Consensus       153 ~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~DD~tvl~~~~~  193 (193)
T PF07228_consen  153 LLDENRGLSPQEIIDALLEAIDRFGKGPLRDDITVLVIRRQ  193 (193)
T ss_dssp             HHHCHTTS-HHHHHHHHHHHHHHHTTSSTSS-EEEEEEEE-
T ss_pred             HHhhccCCCHHHHHHHHHHHHHHhcCCCCCCceEEEEEEEC
Confidence                    4778888899988874   47899999999874

pyruvate dehydrogenase (lipoamide)-phosphatase (3.1.3.43 from EC), adenylate cyclase (4.6.1.1 from EC) and some bacterial stage II sporulation E proteins (3.1.3.16 from EC). Protein phosphatase 2C (PP2C) is one of the four major classes of mammalian serine/threonine specific protein phosphatases (3.1.3.16 from EC). PP2C [] is a monomeric enzyme of about 42 Kd which shows broad substrate specificity and is dependent on divalent cations (mainly manganese and magnesium) for its activity. Its exact physiological role is still unclear. Three isozymes are currently known in mammals: PP2C-alpha, -beta and -gamma. In yeast, there are at least four PP2C homologs: phosphatase PTC1 [], which has weak tyrosine phosphatase activity in addition to its activity on serines, phosphatases PTC2 and PTC3, and hypothetical protein YBR125c. Isozymes of PP2C are also known from Arabidopsis thaliana (ABI1, PPH1), Caenorhabditis elegans (FEM-2, F42G9.1, T23F11.1), Leishmania chagasi and Paramecium tetraurelia. In A. thaliana, the kinase associated protein phosphatase (KAPP) [] is an enzyme that dephosphorylates the Ser/Thr receptor-like kinase RLK5 and which contains a C-terminal PP2C domain. PP2C does not seem to be evolutionary related to the main family of serine/ threonine phosphatases: PP1, PP2A and PP2B. However, it is significantly similar to the catalytic subunit of pyruvate dehydrogenase phosphatase 3.1.3.43 from EC (PDPC) [], which catalyzes dephosphorylation and concomitant reactivation of the alpha subunit of the E1 component of the pyruvate dehydrogenase complex. PDPC is a mitochondrial enzyme and, like PP2C, is magnesium-dependent.; GO: 0003824 catalytic activity; PDB: 3KE6_B 3ZT9_A 3RNR_A 3EQ2_A 3F7A_B 3F79_A 3ES2_B 3PU9_B 3T91_B 3T9Q_B ....

>TIGR02865 spore_II_E stage II sporulation protein E

Probab=98.48  E-value=5.1e-06  Score=93.61  Aligned_cols=156  Identities=16%  Similarity=0.150  Sum_probs=97.3

Q ss_pred             ceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEE
Q psy12423        303 LIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIA  382 (567)
Q Consensus       303 ~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a  382 (567)
                      .+.+.|+.+.+..+.......-..+.+.......+    ..++..+|..+...... ...+|+..+.+.+.+.  .+..+
T Consensus       582 ~~~laDGmGhG~~Aa~~S~~~~~ll~~~~~~g~~~----~~ai~~lN~~L~~~~~~-~~faTl~l~~IDl~~g--~~~~~  654 (764)
T TIGR02865       582 AVAISDGMGSGPEAAQESSACVRLLEKFLESGFDR----EVAIKTVNSILSLRSTD-EKFSTLDLSVIDLYTG--QAEFV  654 (764)
T ss_pred             EEEEEcccCCCHHHHHHHHHHHHHHHHHHHcCCCH----HHHHHHHHHHHHhCCCC-CeEEEEEEEEEECCCC--eEEEE
Confidence            45567776666555544443333332221111122    33445555555433222 2334444444433222  78999


Q ss_pred             EecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC-----------------
Q psy12423        383 SVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS-----------------  445 (567)
Q Consensus       383 ~~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~-----------------  445 (567)
                      ++|+++.|+.|++...+++..+.   .+|...     ..++++...++.++| ++|++|||+|                 
T Consensus       655 ~aG~~p~~i~r~~~v~~i~s~~l---PlGil~-----~~~~~~~~~~L~~GD-~Lll~SDGv~E~~~~~~~~~~~l~~~l  725 (764)
T TIGR02865       655 KVGAVPSFIKRGAKVEVIRSSNL---PIGILD-----EVDVELVRKKLKNGD-LIVMVSDGVLEGEKEVEGKVLWLVRKL  725 (764)
T ss_pred             ecCCCceEEEECCEEEEecCCCc---eeEecc-----CCccceEEEEeCCCC-EEEEECCCCCcCCcccccHHHHHHHHH
Confidence            99999999999988888765432   134321     235677788888875 5669999998                 


Q ss_pred             ------CHHHHHHHHHHHHHHcC---CCCCcEEEEEEe
Q psy12423        446 ------EPVLAAKRIQDLAQSYG---SEDNLSVLVLRF  474 (567)
Q Consensus       446 ------~~~~~a~~l~~~a~~~g---~~dnit~~vv~~  474 (567)
                            +|++.|+.|++.|..+.   ..||+|++|+++
T Consensus       726 ~~~~~~~p~ela~~Il~~a~~~~~~~~~DD~Tvlvirv  763 (764)
T TIGR02865       726 KETNTNDPEEIAEYLLEKAKELRSGKIKDDMTVIVAKV  763 (764)
T ss_pred             HhcCCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEe
Confidence                  57789999999998764   379999999986

Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.

>PLN03150 hypothetical protein; Provisional

Probab=98.42  E-value=5.9e-07  Score=99.54  Aligned_cols=106  Identities=25%  Similarity=0.352  Sum_probs=87.5

Q ss_pred             cccEEecccCCCC-CcccccCCCcCCcEEECcCCCCC-CCChhhhhccCCCccEEECCCCCCCC-CchhhhCCCCCcEEE
Q psy12423        168 RLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIASLKYLF  244 (567)
Q Consensus       168 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~  244 (567)
                      .++.|+|++|.+. .+|..+..+++|+.|+|++|.+. .+|..+..  +++|+.|+|++|++++ +|..+..+++|+.|+
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~--l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~  496 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS--ITSLEVLDLSYNSFNGSIPESLGQLTSLRILN  496 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhC--CCCCCEEECCCCCCCCCCchHHhcCCCCCEEE
Confidence            3788999999998 67888999999999999999998 67766543  8999999999999985 888899999999999


Q ss_pred             ccCCCCC-CCchhhhcCCCCCcEEEccCCcCC
Q psy12423        245 LQSNSIN-ILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       245 Ls~N~l~-~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      |++|.++ .+|..+.....++..+++.+|...
T Consensus       497 Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~l  528 (623)
T PLN03150        497 LNGNSLSGRVPAALGGRLLHRASFNFTDNAGL  528 (623)
T ss_pred             CcCCcccccCChHHhhccccCceEEecCCccc
Confidence            9999998 566654333456778888888643

>KOG4579|consensus

Probab=98.38  E-value=1.8e-08  Score=85.70  Aligned_cols=126  Identities=20%  Similarity=0.263  Sum_probs=94.0

Q ss_pred             CcEEEcCCCccccccCCCC----CCcccEEecccCCCCCcccccC-CCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423        147 LISVIAGNNKLQSLIVSPR----PARLQHLDISYNELESLPDWID-TCPELETIFASHNRITQLPSQFFCRELGKLHTLQ  221 (567)
Q Consensus       147 L~~L~l~~n~l~~~~~~~~----~~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~  221 (567)
                      +..++++.|++..+.....    ...|+..+|++|.+..+|..|. .++.+++|+|++|.|+.+|.++-.  ++.|+.|+
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aa--m~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAA--MPALRSLN  106 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhh--hHHhhhcc
Confidence            3344555554443322111    4578889999999999987654 556999999999999999999544  99999999


Q ss_pred             CCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        222 LSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       222 Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      ++.|.+...|..+..+.+|-.|+..+|.+..||...| .-...-..++.++.+.
T Consensus       107 l~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~dl~-~s~~~al~~lgnepl~  159 (177)
T KOG4579|consen  107 LRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDVDLF-YSSLPALIKLGNEPLG  159 (177)
T ss_pred             cccCccccchHHHHHHHhHHHhcCCCCccccCcHHHh-ccccHHHHHhcCCccc
Confidence            9999999999888789999999999999999998754 2222333445666554

>KOG1644|consensus

Probab=98.35  E-value=6.5e-07  Score=81.39  Aligned_cols=106  Identities=25%  Similarity=0.387  Sum_probs=83.2

Q ss_pred             CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch--hhhCCCCCcEE
Q psy12423        166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--LIRQIASLKYL  243 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L  243 (567)
                      ..+...+||++|.+..++. |..++.|.+|.|++|+|+.|.+.+..- +++|..|.|.+|.|..+.+  -+..++.|++|
T Consensus        41 ~d~~d~iDLtdNdl~~l~~-lp~l~rL~tLll~nNrIt~I~p~L~~~-~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L  118 (233)
T KOG1644|consen   41 LDQFDAIDLTDNDLRKLDN-LPHLPRLHTLLLNNNRITRIDPDLDTF-LPNLKTLILTNNSIQELGDLDPLASCPKLEYL  118 (233)
T ss_pred             ccccceecccccchhhccc-CCCccccceEEecCCcceeeccchhhh-ccccceEEecCcchhhhhhcchhccCCcccee
Confidence            4567788999998887754 778889999999999999888877654 7889999999998887654  35678888999


Q ss_pred             EccCCCCCCCch---hhhcCCCCCcEEEccCCc
Q psy12423        244 FLQSNSINILPQ---LFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       244 ~Ls~N~l~~l~~---~~l~~l~~L~~L~Ls~N~  273 (567)
                      .+-+|.++.-..   .++..+|+|+.||+++=.
T Consensus       119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             eecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            998888885544   345678888888877643

>KOG4658|consensus

Probab=98.31  E-value=4.4e-07  Score=103.01  Aligned_cols=41  Identities=29%  Similarity=0.536  Sum_probs=20.6

Q ss_pred             CcEEEccCC-CCCcCCccCCCCCCCCEEeCcCCCCCCCChhh
Q psy12423          1 LQEFRVDRN-DLTEFPGNQDSFPRLKFLSAAQNRISHLPVFL   41 (567)
Q Consensus         1 L~~L~Ls~n-~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~   41 (567)
                      |++|||++| .+.++|+.++.|-+|++|+|+++.|+.+|..+
T Consensus       573 LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l  614 (889)
T KOG4658|consen  573 LRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGL  614 (889)
T ss_pred             eEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHH
Confidence            344555544 34455555555555555555555555555444

>PF13672 PP2C_2: Protein phosphatase 2C; PDB: 2JFT_A 2JFS_A 2V06_A 2JFR_A 2J86_A 2J82_A 2Y09_A 2XZV_A 2CM1_A 1TXO_B

Probab=98.25  E-value=1.2e-05  Score=76.75  Aligned_cols=77  Identities=19%  Similarity=0.301  Sum_probs=41.9

Q ss_pred             cCceeEEEEeecCccceEEEEEEEecCceEEE-EeCCeeeeCCCCCC-----CCCCCCCCCCCCCccCCCceEEEEecCC
Q psy12423        360 SLSATLCHLSLHPVTHRYMLHIASVGEAKAIL-CRQAGSLTFTHAPT-----LSPPVPPQGSCPLSFPDPHVTEVMLHEN  433 (567)
Q Consensus       360 ~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l-~r~~~~~~lt~dh~-----~~r~~g~~~~~~~~~~~p~v~~~~l~~~  433 (567)
                      ..+++++.+.+.+.    .++++++||||+|+ .++|...+++.+|+     .++.+....    .....++..+.+.++
T Consensus        96 ~~~tTl~~~v~~~~----~~~~~~iGD~~i~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~  167 (212)
T PF13672_consen   96 DYGTTLLALVIDPD----KVYIFNIGDSRIYVIRRNGEIQQLTDDHSGEYPNQTRSLTGDD----PEPDVQYGSIPLEEG  167 (212)
T ss_dssp             T-EE-EEEEEEETT----EEEEEEESS-EEEEEEETTEEEE-S---BHHHHHCTTSCCHHC----CCTETEEEEEE--TT
T ss_pred             ccCceEEEEEEECC----EEEEEEECCCeEEEEECCCEEEEcCCCccchhhhhhhccCccc----cccCCeEEEEEcCCC
Confidence            34455554556665    79999999999964 57888889999998     222222111    112235555666666


Q ss_pred             CeEEEEEcCCCC
Q psy12423        434 DHFLILANKSVS  445 (567)
Q Consensus       434 d~~lil~sDGl~  445 (567)
                      |. ++|||||+|
T Consensus       168 d~-ilL~SDG~~  178 (212)
T PF13672_consen  168 DV-ILLCSDGVW  178 (212)
T ss_dssp             -E-EEEE-HHHH
T ss_pred             CE-EEEECcCcc
Confidence            54 558999999

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.25  E-value=3.5e-06  Score=86.43  Aligned_cols=54  Identities=22%  Similarity=0.128  Sum_probs=29.9

Q ss_pred             CCCCCccEEEccCCCCCCCCCcccccCcEEEcccC-cccceecC-CCCCcEEEcCCC
Q psy12423        101 GNYGNLTTLDVSENSIESLDLGALNRLESIKCSRN-QLKTLVLN-GSSLISVIAGNN  155 (567)
Q Consensus       101 ~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n-~l~~l~~~-~~~L~~L~l~~n  155 (567)
                      ..+.+++.|++++|.++.++ .-..+|++|.++++ .++.++.. ..+|+.|.+++|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP-~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLP-VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccC-CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCc
Confidence            34577788888888777766 22335777777653 33333321 124444444444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.19  E-value=1.1e-06  Score=60.76  Aligned_cols=39  Identities=28%  Similarity=0.550  Sum_probs=34.9

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCCh
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPV   39 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~   39 (567)
                      |++|+|++|+|+++|+.|++|++|++|++++|+|+++++
T Consensus         3 L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    3 LEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             -SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             ceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCcC
Confidence            789999999999999889999999999999999998764

...

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.16  E-value=9.5e-06  Score=83.28  Aligned_cols=132  Identities=16%  Similarity=0.219  Sum_probs=70.0

Q ss_pred             CccEEEecCCCCCCccccCCCCCccEEEccCC-CCCCCCCcccccCcEEEcccC-cccceecCCCCCcEEEcCCCccccc
Q psy12423         83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSEN-SIESLDLGALNRLESIKCSRN-QLKTLVLNGSSLISVIAGNNKLQSL  160 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~L~~L~ls~n-~l~~l~~~~~~L~~L~l~~n~l~~~  160 (567)
                      +++.|++++|.++..+.  -..+|+.|.++++ .++.++-.-..+|++|.+++| .+..++   .+|+.|.+..+.+..+
T Consensus        53 ~l~~L~Is~c~L~sLP~--LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs~L~sLP---~sLe~L~L~~n~~~~L  127 (426)
T PRK15386         53 ASGRLYIKDCDIESLPV--LPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCPEISGLP---ESVRSLEIKGSATDSI  127 (426)
T ss_pred             CCCEEEeCCCCCcccCC--CCCCCcEEEccCCCCcccCCchhhhhhhheEccCcccccccc---cccceEEeCCCCCccc
Confidence            45555555554444331  1124555555542 233332111245666666665 444433   3455566655544332


Q ss_pred             cCCCCCCcccEEecccCCCC---CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423        161 IVSPRPARLQHLDISYNELE---SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL  227 (567)
Q Consensus       161 ~~~~~~~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l  227 (567)
                      .  .++++|+.|.+.+++..   .+|..  -.++|++|++++|....+|..+    +.+|+.|.++.+..
T Consensus       128 ~--~LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i~LP~~L----P~SLk~L~ls~n~~  189 (426)
T PRK15386        128 K--NVPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNIILPEKL----PESLQSITLHIEQK  189 (426)
T ss_pred             c--cCcchHhheeccccccccccccccc--cCCcccEEEecCCCcccCcccc----cccCcEEEeccccc
Confidence            2  23567777777543311   12211  1257888888888877666554    56888888887643

>KOG2982|consensus

Probab=98.16  E-value=3.9e-07  Score=87.31  Aligned_cols=192  Identities=19%  Similarity=0.206  Sum_probs=107.5

Q ss_pred             CCccEEEecCCCCCCcc----ccCCCCCccEEEccCCCCCCC--CC-cccccCcEEEcccCccc-----ceecCCCCCcE
Q psy12423         82 GELTSVNLRSNQLKGTI----ILGNYGNLTTLDVSENSIESL--DL-GALNRLESIKCSRNQLK-----TLVLNGSSLIS  149 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~--~~-~~l~~L~~L~ls~n~l~-----~l~~~~~~L~~  149 (567)
                      +.++.|||.+|.|+.-.    .+.++|.|++|+++.|.+...  .+ ..+.+|+.|.|.+..+.     .+...++.++.
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            35566666666665432    345566666666666665542  11 23345666665554432     22234455555


Q ss_pred             EEcCCCccccccCCC-----CCCcccEEecccCCCC---CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423        150 VIAGNNKLQSLIVSP-----RPARLQHLDISYNELE---SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ  221 (567)
Q Consensus       150 L~l~~n~l~~~~~~~-----~~~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~  221 (567)
                      |.++.|.+..+....     +-+.+++|.+-.|...   ++...-.-++++..+.+..|.+......-....++.+..|+
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln  230 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN  230 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence            555555433322211     1234555555555332   11112234577888888888877554432222367778888


Q ss_pred             CCCCCCCCCc--hhhhCCCCCcEEEccCCCCCCCch------hhhcCCCCCcEEEccCCcCC
Q psy12423        222 LSFNRLTSLP--SLIRQIASLKYLFLQSNSINILPQ------LFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       222 Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~l~~------~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      |+.|+|.+..  ..+.+++.|..|.+++|.+.+--.      -+.+.+++++.|+=+  +++
T Consensus       231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs--kIs  290 (418)
T KOG2982|consen  231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS--KIS  290 (418)
T ss_pred             hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc--ccc
Confidence            9988888754  357788899999999998763211      123577788776543  444

>KOG4658|consensus

Probab=98.16  E-value=1.9e-06  Score=97.90  Aligned_cols=97  Identities=16%  Similarity=0.027  Sum_probs=46.1

Q ss_pred             CcccccCCCcCCcEEECcCCCCCCCChhhhhc-----cCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCch
Q psy12423        181 SLPDWIDTCPELETIFASHNRITQLPSQFFCR-----ELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQ  255 (567)
Q Consensus       181 ~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~-----~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~  255 (567)
                      ..+..+..+.+|+.|.+.++.+.++....+..     .++++..+...++..-..+.+....++|+.|.+..+...+.|.
T Consensus       708 ~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i  787 (889)
T KOG4658|consen  708 TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDII  787 (889)
T ss_pred             eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCC
Confidence            44445566667777777776665433322110     0112222222222222223333445677777777766554444


Q ss_pred             hhhcCCCCCcEEEccCCcCCCC
Q psy12423        256 LFLQNSSKLKVLNISKNCLKML  277 (567)
Q Consensus       256 ~~l~~l~~L~~L~Ls~N~l~~i  277 (567)
                      .....+..++.+-+..+.+..+
T Consensus       788 ~~~k~~~~l~~~i~~f~~~~~l  809 (889)
T KOG4658|consen  788 PKLKALLELKELILPFNKLEGL  809 (889)
T ss_pred             CHHHHhhhcccEEecccccccc
Confidence            3344555555555555555543

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.15  E-value=2.2e-06  Score=59.19  Aligned_cols=39  Identities=36%  Similarity=0.437  Sum_probs=17.8

Q ss_pred             CCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423        239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP  278 (567)
Q Consensus       239 ~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip  278 (567)
                      +|++|++++|+|+.+|+. +.++++|+.|++++|+|+.+|
T Consensus         2 ~L~~L~l~~N~i~~l~~~-l~~l~~L~~L~l~~N~i~~i~   40 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPE-LSNLPNLETLNLSNNPISDIS   40 (44)
T ss_dssp             T-SEEEETSSS-SSHGGH-GTTCTTSSEEEETSSCCSBEG
T ss_pred             cceEEEccCCCCcccCch-HhCCCCCCEEEecCCCCCCCc
Confidence            344555555555544443 244555555555555554443

...

>KOG2982|consensus

Probab=98.13  E-value=6.9e-07  Score=85.69  Aligned_cols=191  Identities=19%  Similarity=0.189  Sum_probs=133.8

Q ss_pred             ccEEEecCCCCCCcc---cc-CCCCCccEEEccCCCCCCCC-----CcccccCcEEEcccCccccee----cCCCCCcEE
Q psy12423         84 LTSVNLRSNQLKGTI---IL-GNYGNLTTLDVSENSIESLD-----LGALNRLESIKCSRNQLKTLV----LNGSSLISV  150 (567)
Q Consensus        84 L~~L~Ls~n~l~~~~---~l-~~l~~L~~L~L~~n~l~~~~-----~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L  150 (567)
                      +.-|.+.++.|....   .+ ...+.++.|||..|.|..-+     +..++.|+.|+++.|++...+    ....+|+.|
T Consensus        47 ~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~l  126 (418)
T KOG2982|consen   47 LELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVL  126 (418)
T ss_pred             hhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEE
Confidence            445556666665433   22 34568999999999998742     678999999999999987654    455689999


Q ss_pred             EcCCCccccccCCCC---CCcccEEecccCCCCCc--c-cccCCC-cCCcEEECcCCCCCCCCh--hhhhccCCCccEEE
Q psy12423        151 IAGNNKLQSLIVSPR---PARLQHLDISYNELESL--P-DWIDTC-PELETIFASHNRITQLPS--QFFCRELGKLHTLQ  221 (567)
Q Consensus       151 ~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~l--p-~~l~~l-~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~  221 (567)
                      .+.+..+.......+   ++.++.|.+|.|.+..+  . +..... +.+++|.+..|.......  .+.. .++++..+.
T Consensus       127 VLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r-~Fpnv~sv~  205 (418)
T KOG2982|consen  127 VLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSR-IFPNVNSVF  205 (418)
T ss_pred             EEcCCCCChhhhhhhhhcchhhhhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHh-hcccchhee
Confidence            998887765544444   77889999999966532  1 122222 356666665554331100  1111 278899999


Q ss_pred             CCCCCCCCCch--hhhCCCCCcEEEccCCCCCCCch-hhhcCCCCCcEEEccCCcCC
Q psy12423        222 LSFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       222 Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      +..|.|.....  ....++.+-.|+|+.|+|.++.. +.+..++.|..|.+++|++.
T Consensus       206 v~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~  262 (418)
T KOG2982|consen  206 VCEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLS  262 (418)
T ss_pred             eecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccc
Confidence            99999887543  45677888899999999986543 44678999999999999986

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.11  E-value=5e-07  Score=85.57  Aligned_cols=168  Identities=21%  Similarity=0.199  Sum_probs=109.9

Q ss_pred             ccCCCCCccEEEccCCCCCCCC-------CcccccCcEEEcccCcccceecC--CCCCcEEEcCCCccccccCCCCCCcc
Q psy12423         99 ILGNYGNLTTLDVSENSIESLD-------LGALNRLESIKCSRNQLKTLVLN--GSSLISVIAGNNKLQSLIVSPRPARL  169 (567)
Q Consensus        99 ~l~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~~L~ls~n~l~~l~~~--~~~L~~L~l~~n~l~~~~~~~~~~~L  169 (567)
                      .+.++|.|+..+||.|.+..-.       ++.-+.|.+|.+++|.+..+...  ...|.+|  ..|+-     ..--+.|
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~l--a~nKK-----aa~kp~L  159 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL--AYNKK-----AADKPKL  159 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHH--HHHhh-----hccCCCc
Confidence            4567788888888888776521       34456677777777766543211  0111111  11110     0013679


Q ss_pred             cEEecccCCCCCccc-----ccCCCcCCcEEECcCCCCCC--CCh----hhhhccCCCccEEECCCCCCCC-----Cchh
Q psy12423        170 QHLDISYNELESLPD-----WIDTCPELETIFASHNRITQ--LPS----QFFCRELGKLHTLQLSFNRLTS-----LPSL  233 (567)
Q Consensus       170 ~~L~Ls~n~l~~lp~-----~l~~l~~L~~L~Ls~N~l~~--l~~----~~~~~~l~~L~~L~Ls~N~l~~-----lp~~  233 (567)
                      +......|++...|.     .+..-.+|+++.+..|.|..  +..    .++.  +.+|+.|||..|-++.     +...
T Consensus       160 e~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y--~~~LevLDlqDNtft~~gS~~La~a  237 (388)
T COG5238         160 EVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFY--SHSLEVLDLQDNTFTLEGSRYLADA  237 (388)
T ss_pred             eEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHH--hCcceeeeccccchhhhhHHHHHHH
Confidence            999999999986653     23444689999999999983  222    2233  6899999999999885     3344


Q ss_pred             hhCCCCCcEEEccCCCCCCCchh-hh-----cCCCCCcEEEccCCcCC
Q psy12423        234 IRQIASLKYLFLQSNSINILPQL-FL-----QNSSKLKVLNISKNCLK  275 (567)
Q Consensus       234 ~~~l~~L~~L~Ls~N~l~~l~~~-~l-----~~l~~L~~L~Ls~N~l~  275 (567)
                      +...+.|+.|.+..|.++.-... ++     ...|+|..|-+.+|.+.
T Consensus       238 l~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~  285 (388)
T COG5238         238 LCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERR  285 (388)
T ss_pred             hcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhc
Confidence            56677899999999998843322 11     24688999999999764

>KOG1644|consensus

Probab=97.92  E-value=1.5e-05  Score=72.75  Aligned_cols=107  Identities=22%  Similarity=0.232  Sum_probs=72.8

Q ss_pred             CCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccC-CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECC
Q psy12423        145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWID-TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS  223 (567)
Q Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~-~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls  223 (567)
                      .+...+++++|.+..+.....++.|..|.|.+|.|+.|.+.+. .+++|+.|.|.+|.|..+.+-.-...++.|++|.+-
T Consensus        42 d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             cccceecccccchhhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            3455666777777666666667788888888888887754443 456788888888887754332211127788888888


Q ss_pred             CCCCCCCch----hhhCCCCCcEEEccCCCCC
Q psy12423        224 FNRLTSLPS----LIRQIASLKYLFLQSNSIN  251 (567)
Q Consensus       224 ~N~l~~lp~----~~~~l~~L~~L~Ls~N~l~  251 (567)
                      +|.++.-..    .+..+++|+.||++.-...
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~  153 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK  153 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence            888775432    3577889999988765433

>KOG2120|consensus

Probab=97.83  E-value=7.4e-07  Score=85.50  Aligned_cols=166  Identities=18%  Similarity=0.139  Sum_probs=91.7

Q ss_pred             CccEEEccCCCCCCCC----CcccccCcEEEcccCccccee----cCCCCCcEEEcCCCc-cccccCCCC---CCcccEE
Q psy12423        105 NLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGNNK-LQSLIVSPR---PARLQHL  172 (567)
Q Consensus       105 ~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~n~-l~~~~~~~~---~~~L~~L  172 (567)
                      .|++|||++..|+.-.    +..+.+|+.|.+.++++.+-+    ....+|+.|+++.+. ++.......   ++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            4777777777766532    455677777777777776543    345667777776542 332222211   5667777


Q ss_pred             ecccCCCC-C-cccccCC-CcCCcEEECcCCC--CCCCChhhhhccCCCccEEECCCCC-CCC-CchhhhCCCCCcEEEc
Q psy12423        173 DISYNELE-S-LPDWIDT-CPELETIFASHNR--ITQLPSQFFCRELGKLHTLQLSFNR-LTS-LPSLIRQIASLKYLFL  245 (567)
Q Consensus       173 ~Ls~n~l~-~-lp~~l~~-l~~L~~L~Ls~N~--l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~-lp~~~~~l~~L~~L~L  245 (567)
                      +|++|.+. + +...+.. -++|+.|+|+++.  +..=.......++++|.+||||+|. ++. .-..+..++.|++|.+
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl  345 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL  345 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence            77777655 1 1111111 2467777777763  1111111122236777777777753 332 3334566677777777


Q ss_pred             cCCCCCCCchhh---hcCCCCCcEEEccCC
Q psy12423        246 QSNSINILPQLF---LQNSSKLKVLNISKN  272 (567)
Q Consensus       246 s~N~l~~l~~~~---l~~l~~L~~L~Ls~N  272 (567)
                      +.|..  |++..   +...|+|.+||+.++
T Consensus       346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~  373 (419)
T KOG2120|consen  346 SRCYD--IIPETLLELNSKPSLVYLDVFGC  373 (419)
T ss_pred             hhhcC--CChHHeeeeccCcceEEEEeccc
Confidence            77642  33322   345667777776664

>KOG2120|consensus

Probab=97.82  E-value=4.2e-07  Score=87.15  Aligned_cols=165  Identities=19%  Similarity=0.209  Sum_probs=120.9

Q ss_pred             CCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccC-cccce-----ecCCCCCcE
Q psy12423         82 GELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRN-QLKTL-----VLNGSSLIS  149 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n-~l~~l-----~~~~~~L~~  149 (567)
                      ..|++|||++..|+...   .+..+.+|+.|.+.++++.+.   .+..-.+|+.|+++.+ .+++.     ..+++.|..
T Consensus       185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~  264 (419)
T KOG2120|consen  185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE  264 (419)
T ss_pred             hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence            35899999998887543   567788999999999998873   4667788999999875 34432     356788999


Q ss_pred             EEcCCCccccccCCCC----CCcccEEecccCC--C--CCcccccCCCcCCcEEECcCCC-CC-CCChhhhhccCCCccE
Q psy12423        150 VIAGNNKLQSLIVSPR----PARLQHLDISYNE--L--ESLPDWIDTCPELETIFASHNR-IT-QLPSQFFCRELGKLHT  219 (567)
Q Consensus       150 L~l~~n~l~~~~~~~~----~~~L~~L~Ls~n~--l--~~lp~~l~~l~~L~~L~Ls~N~-l~-~l~~~~~~~~l~~L~~  219 (567)
                      |+++-|.+........    -++|+.|+|+++.  +  ..+.-....+++|..|||++|. ++ ..-..++.  ++.|++
T Consensus       265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~k--f~~L~~  342 (419)
T KOG2120|consen  265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFK--FNYLQH  342 (419)
T ss_pred             cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHh--cchhee
Confidence            9999887765443322    5789999999873  2  2343345788999999999984 44 33334444  889999


Q ss_pred             EECCCCCCCCCch---hhhCCCCCcEEEccCCC
Q psy12423        220 LQLSFNRLTSLPS---LIRQIASLKYLFLQSNS  249 (567)
Q Consensus       220 L~Ls~N~l~~lp~---~~~~l~~L~~L~Ls~N~  249 (567)
                      |.|+.|..- +|.   .+...++|.+|++.++-
T Consensus       343 lSlsRCY~i-~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  343 LSLSRCYDI-IPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             eehhhhcCC-ChHHeeeeccCcceEEEEecccc
Confidence            999998632 222   35788999999998874

>KOG3665|consensus

Probab=97.42  E-value=4.4e-05  Score=84.84  Aligned_cols=124  Identities=20%  Similarity=0.207  Sum_probs=69.8

Q ss_pred             ccCcEEEcccCccc------ceecCCCCCcEEEcCCCccccccCCCC---CCcccEEecccCCCCCcccccCCCcCCcEE
Q psy12423        125 NRLESIKCSRNQLK------TLVLNGSSLISVIAGNNKLQSLIVSPR---PARLQHLDISYNELESLPDWIDTCPELETI  195 (567)
Q Consensus       125 ~~L~~L~ls~n~l~------~l~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L  195 (567)
                      .+|++|++++...-      .+...+|+|++|.+.+-.+........   +++|..||+|+.+++.+ ..++.+++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            36777777664322      112345667777666655433321111   56777777777777666 446667777777


Q ss_pred             ECcCCCCCCCC--hhhhhccCCCccEEECCCCCCCCCch-------hhhCCCCCcEEEccCCCCC
Q psy12423        196 FASHNRITQLP--SQFFCRELGKLHTLQLSFNRLTSLPS-------LIRQIASLKYLFLQSNSIN  251 (567)
Q Consensus       196 ~Ls~N~l~~l~--~~~~~~~l~~L~~L~Ls~N~l~~lp~-------~~~~l~~L~~L~Ls~N~l~  251 (567)
                      .+.+=.+..-.  ..+|.  +++|+.||+|......-+.       .-..+|.|+.||.+++.+.
T Consensus       201 ~mrnLe~e~~~~l~~LF~--L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFN--LKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             hccCCCCCchhhHHHHhc--ccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            66665555322  23454  6777777777654443221       1234666777777766655

>KOG2739|consensus

Probab=97.39  E-value=0.00011  Score=69.93  Aligned_cols=65  Identities=25%  Similarity=0.223  Sum_probs=32.9

Q ss_pred             CCCccEEECCCCCCCCCch--hhhCCCCCcEEEccCCCCCCCch---hhhcCCCCCcEEEccCCcCCCCC
Q psy12423        214 LGKLHTLQLSFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQ---LFLQNSSKLKVLNISKNCLKMLP  278 (567)
Q Consensus       214 l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~---~~l~~l~~L~~L~Ls~N~l~~ip  278 (567)
                      +++|++|+|++|+|+.+..  .+..+++|..|++.+|..+.+..   .+|.-+++|++||-..-.=...|
T Consensus        90 ~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~~~Ea~  159 (260)
T KOG2739|consen   90 APNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVDGEEAP  159 (260)
T ss_pred             CCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHHhhhhccccccccCCcccc
Confidence            3555555555555543211  13445556666666665554322   34556677776654443333444

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.24  E-value=0.00056  Score=59.35  Aligned_cols=107  Identities=19%  Similarity=0.311  Sum_probs=48.6

Q ss_pred             CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEE
Q psy12423        166 PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYL  243 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L  243 (567)
                      +.+|+.+.+.. .+..|+. .|..+++|+.+.+..+ +..++...|.. +++|+.+.+.. .+..++. .+..+++|+.+
T Consensus        11 ~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~-~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   11 CSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSN-CKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             -TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT--TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeec-ccccccccccc-ccccccccccccccccccc
Confidence            34566666653 4555543 4566666666666554 66666666654 55666666654 4443333 34556666666


Q ss_pred             EccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      .+..+ +..++...|.++ .|+.+.+.. .++.|+.
T Consensus        87 ~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~  119 (129)
T PF13306_consen   87 DIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEE  119 (129)
T ss_dssp             EETTT--BEEHTTTTTT--T--EEE-TT-B-SS---
T ss_pred             ccCcc-ccEEchhhhcCC-CceEEEECC-CccEECC
Confidence            66554 666666666665 666666654 4455544

>KOG3665|consensus

Probab=97.19  E-value=0.00029  Score=78.43  Aligned_cols=129  Identities=18%  Similarity=0.148  Sum_probs=94.3

Q ss_pred             CCCCcEEEcCCCccccccC-C---CCCCcccEEecccCCCC--CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCc
Q psy12423        144 GSSLISVIAGNNKLQSLIV-S---PRPARLQHLDISYNELE--SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKL  217 (567)
Q Consensus       144 ~~~L~~L~l~~n~l~~~~~-~---~~~~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L  217 (567)
                      ..+|+.|++++...-.... .   ..+|+|+.|.+++-.+.  ++-....++++|..||+++.+++.+ .++..  +++|
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~--LknL  197 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISR--LKNL  197 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhc--cccH
Confidence            3678899998754321111 0   11899999999987665  3445567889999999999999988 34433  8999


Q ss_pred             cEEECCCCCCCCCch--hhhCCCCCcEEEccCCCCCCCchh------hhcCCCCCcEEEccCCcCC
Q psy12423        218 HTLQLSFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQL------FLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       218 ~~L~Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~~------~l~~l~~L~~L~Ls~N~l~  275 (567)
                      +.|.+.+=.+..-..  .+..+++|++||+|.......+.-      ....+|.|+.||.|++.+.
T Consensus       198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~  263 (699)
T KOG3665|consen  198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDIN  263 (699)
T ss_pred             HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchh
Confidence            999888877765332  467899999999999876654421      1246899999999998765

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.18  E-value=0.00087  Score=58.14  Aligned_cols=113  Identities=22%  Similarity=0.324  Sum_probs=59.9

Q ss_pred             CCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEEC
Q psy12423        146 SLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL  222 (567)
Q Consensus       146 ~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L  222 (567)
                      +|+.+.+.. .+..+....+  +.+|+.+.+.++ +..++. .|..+++|+.+.+.. .+..++...|.. +++|+.+++
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~-~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSN-CTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT--TTECEEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccc-ccccccccc
Confidence            455555542 4555555555  567888888774 777754 677777899999865 777777777765 788999998


Q ss_pred             CCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCc
Q psy12423        223 SFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLK  265 (567)
Q Consensus       223 s~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~  265 (567)
                      ..+ +..++. .+.++ .|+.+.+.. .++.++...|.++++|+
T Consensus        89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   89 PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            765 666554 45665 889988876 77888888888888774

>KOG2123|consensus

Probab=97.13  E-value=2.5e-05  Score=74.56  Aligned_cols=80  Identities=24%  Similarity=0.189  Sum_probs=62.4

Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCccccee-----cCCCCCcEEEcCC
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV-----LNGSSLISVIAGN  154 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~-----~~~~~L~~L~l~~  154 (567)
                      +.+.+.|++-+|.+..+.....++.|+.|.|+-|.|+.+ ++..|++|++|+|..|.|..+.     .++++|+.|.+..
T Consensus        18 l~~vkKLNcwg~~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HHHhhhhcccCCCccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            346788888899888877777889999999999999887 5888999999999999887764     3566666666666


Q ss_pred             Cccccc
Q psy12423        155 NKLQSL  160 (567)
Q Consensus       155 n~l~~~  160 (567)
                      |...+.
T Consensus        98 NPCc~~  103 (388)
T KOG2123|consen   98 NPCCGE  103 (388)
T ss_pred             CCcccc
Confidence            654443

>KOG2739|consensus

Probab=97.13  E-value=0.00027  Score=67.33  Aligned_cols=84  Identities=31%  Similarity=0.323  Sum_probs=48.7

Q ss_pred             CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC--CCC-CCchhhhCCCCCcEEEccCCCCC---CCchhhhcCC
Q psy12423        188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN--RLT-SLPSLIRQIASLKYLFLQSNSIN---ILPQLFLQNS  261 (567)
Q Consensus       188 ~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N--~l~-~lp~~~~~l~~L~~L~Ls~N~l~---~l~~~~l~~l  261 (567)
                      .+..|+.|.+.+..++++...-+   +++|+.|.++.|  .+. +++.....+++|++|++++|+|.   .+++  +..+
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~---Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p--l~~l  115 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPK---LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP--LKEL  115 (260)
T ss_pred             cccchhhhhhhccceeecccCCC---cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch--hhhh
Confidence            34455555555555554332222   667777777777  333 25544555677777777777766   3333  3456


Q ss_pred             CCCcEEEccCCcCCC
Q psy12423        262 SKLKVLNISKNCLKM  276 (567)
Q Consensus       262 ~~L~~L~Ls~N~l~~  276 (567)
                      .+|..|++.+|..+.
T Consensus       116 ~nL~~Ldl~n~~~~~  130 (260)
T KOG2739|consen  116 ENLKSLDLFNCSVTN  130 (260)
T ss_pred             cchhhhhcccCCccc
Confidence            667777777776554

>KOG2123|consensus

Probab=96.88  E-value=5.6e-05  Score=72.19  Aligned_cols=97  Identities=26%  Similarity=0.288  Sum_probs=45.8

Q ss_pred             cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch--hhhCCCCCcEEEc
Q psy12423        168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--LIRQIASLKYLFL  245 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L~~L~L  245 (567)
                      +.+.|++-+|.|..|. ....++.|+.|.|+-|+|+.+.+..-   +.+|++|+|..|.|.++.+  .+.++++|+.|.|
T Consensus        20 ~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL~pl~r---CtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL   95 (388)
T KOG2123|consen   20 NVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSLAPLQR---CTRLKELYLRKNCIESLDELEYLKNLPSLRTLWL   95 (388)
T ss_pred             HhhhhcccCCCccHHH-HHHhcccceeEEeeccccccchhHHH---HHHHHHHHHHhcccccHHHHHHHhcCchhhhHhh
Confidence            3444555555554432 23344555555555555555443221   4455555555555555443  2355555555555


Q ss_pred             cCCCCCCC-ch----hhhcCCCCCcEEE
Q psy12423        246 QSNSINIL-PQ----LFLQNSSKLKVLN  268 (567)
Q Consensus       246 s~N~l~~l-~~----~~l~~l~~L~~L~  268 (567)
                      ..|.-.+- +.    .++.-+|+|+.||
T Consensus        96 ~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   96 DENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             ccCCcccccchhHHHHHHHHcccchhcc
Confidence            55543311 11    1334556666553

>KOG4341|consensus

Probab=96.64  E-value=4.6e-05  Score=76.74  Aligned_cols=84  Identities=23%  Similarity=0.145  Sum_probs=39.9

Q ss_pred             CCcccEEecccCCC-CCcc--cccCCCcCCcEEECcCCC-CCCCChhhhhccCCCccEEECCCCCCCC---CchhhhCCC
Q psy12423        166 PARLQHLDISYNEL-ESLP--DWIDTCPELETIFASHNR-ITQLPSQFFCRELGKLHTLQLSFNRLTS---LPSLIRQIA  238 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l-~~lp--~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~---lp~~~~~l~  238 (567)
                      +..|+.|+.+++.- +..+  ..-.+..+|+.|-++.++ ++...........+.|+.+++..+....   +-..-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            44566666655532 2111  112345566666666653 4433333333335556666665554321   222224555


Q ss_pred             CCcEEEccCCC
Q psy12423        239 SLKYLFLQSNS  249 (567)
Q Consensus       239 ~L~~L~Ls~N~  249 (567)
                      .|+.|.|+++.
T Consensus       373 ~lr~lslshce  383 (483)
T KOG4341|consen  373 RLRVLSLSHCE  383 (483)
T ss_pred             hhccCChhhhh
Confidence            66666666553

>COG2208 RsbU Serine phosphatase RsbU, regulator of sigma subunit [Signal transduction mechanisms / Transcription]

Probab=95.88  E-value=0.13  Score=53.50  Aligned_cols=107  Identities=17%  Similarity=0.218  Sum_probs=69.2

Q ss_pred             CceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEE
Q psy12423        361 LSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILA  440 (567)
Q Consensus       361 ~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~  440 (567)
                      ...+++.....+...  .+..+++|=--+++.+.++......=+...+++|...     ...+.+....+.+ ++.+|+.
T Consensus       231 ~f~T~~~~~~d~~~~--~l~y~~aGH~p~~i~~~~~~~~~~~l~~~g~piG~~~-----~~~~~~~~~~l~~-gd~lvl~  302 (367)
T COG2208         231 MFVTLFLGVYDLDSG--ELTYSNAGHEPALILSADGEIEVEDLTALGLPIGLLP-----DYQYEVASLQLEP-GDLLVLY  302 (367)
T ss_pred             cEEEEEEEEEeccCC--EEEEeeCCCCCeeEEEcCCCceeEEccCCCceeeecC-----CccchheeEEecC-CCEEEEE
Confidence            445555554443322  6888999999998888766421112222445566443     2356677777888 5677899


Q ss_pred             cCCCC-------------------------CHHHHHHHHHHHHHHcC----CCCCcEEEEEEeC
Q psy12423        441 NKSVS-------------------------EPVLAAKRIQDLAQSYG----SEDNLSVLVLRFQ  475 (567)
Q Consensus       441 sDGl~-------------------------~~~~~a~~l~~~a~~~g----~~dnit~~vv~~~  475 (567)
                      |||+.                         .|+++++.+.+.....-    -.|++|++++++.
T Consensus       303 tDGv~Ea~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~i~~~l~~~~~~~~~~DDiTll~lk~~  366 (367)
T COG2208         303 TDGVTEARNSDGEFFGLERLLKILGRLLGQPAEEILEAILESLEELQGDQIQDDDITLLVLKVK  366 (367)
T ss_pred             cCCeeeeecCCccEecHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhCCccccCceEEEEEEec
Confidence            99998                         45666666666655533    3477999999875

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.70  E-value=0.0032  Score=36.23  Aligned_cols=20  Identities=25%  Similarity=0.458  Sum_probs=13.4

Q ss_pred             CcEEEccCCCCCcCCccCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDS   20 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~   20 (567)
                      |++|||++|+|++||++|++
T Consensus         2 L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTTTTT
T ss_pred             ccEEECCCCcCEeCChhhcC
Confidence            56777777777777665554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.33  E-value=0.0075  Score=34.70  Aligned_cols=21  Identities=38%  Similarity=0.539  Sum_probs=13.5

Q ss_pred             cccEEecccCCCCCcccccCC
Q psy12423        168 RLQHLDISYNELESLPDWIDT  188 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp~~l~~  188 (567)
                      +|++|+|++|+++.+|.+|++
T Consensus         1 ~L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESEEGTTTTT
T ss_pred             CccEEECCCCcCEeCChhhcC
Confidence            366777777777766665543

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.91  E-value=0.015  Score=31.07  Aligned_cols=16  Identities=44%  Similarity=0.737  Sum_probs=7.0

Q ss_pred             CCcEEEccCCcCCCCC
Q psy12423        263 KLKVLNISKNCLKMLP  278 (567)
Q Consensus       263 ~L~~L~Ls~N~l~~ip  278 (567)
                      +|+.|+|++|+|+.+|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            4556666666655554

...

>KOG4308|consensus

Probab=94.89  E-value=0.0004  Score=73.97  Aligned_cols=129  Identities=26%  Similarity=0.250  Sum_probs=77.5

Q ss_pred             CCcEEEcCCCccccccCCCC------CCcccEEecccCCCC-----Cccccc----CCCcCCcEEECcCCCCCCCChh--
Q psy12423        146 SLISVIAGNNKLQSLIVSPR------PARLQHLDISYNELE-----SLPDWI----DTCPELETIFASHNRITQLPSQ--  208 (567)
Q Consensus       146 ~L~~L~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~-----~lp~~l----~~l~~L~~L~Ls~N~l~~l~~~--  208 (567)
                      .+++|.+..|.++.......      ...++.++++.|.+.     .++..+    ....++++|.+++|.++.-...  
T Consensus       145 ~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l  224 (478)
T KOG4308|consen  145 LLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALL  224 (478)
T ss_pred             HHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHH
Confidence            34445555555554443332      456777777777664     122233    3467888888888887722111  


Q ss_pred             --hhhccCCC-ccEEECCCCCCCC-----CchhhhCC-CCCcEEEccCCCCCCCch----hhhcCCCCCcEEEccCCcCC
Q psy12423        209 --FFCRELGK-LHTLQLSFNRLTS-----LPSLIRQI-ASLKYLFLQSNSINILPQ----LFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       209 --~~~~~l~~-L~~L~Ls~N~l~~-----lp~~~~~l-~~L~~L~Ls~N~l~~l~~----~~l~~l~~L~~L~Ls~N~l~  275 (567)
                        .... .+. +..|++..|.+.+     +.+.+..+ +.+++++++.|.|++-..    ..+..++.++++.+++|++.
T Consensus       225 ~~~l~~-~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~  303 (478)
T KOG4308|consen  225 DEVLAS-GESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT  303 (478)
T ss_pred             HHHHhc-cchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence              1111 333 6668888888774     23334445 677888888888874222    23356778888888888776

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=94.45  E-value=0.037  Score=33.18  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.1

Q ss_pred             CCCCCEEeCcCCCCCCCChhhhc
Q psy12423         21 FPRLKFLSAAQNRISHLPVFLRH   43 (567)
Q Consensus        21 l~~L~~L~Ls~n~i~~lp~~~~~   43 (567)
                      +++|++|+|++|.|..+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            56899999999999999988764

>smart00370 LRR Leucine-rich repeats, outliers

Probab=94.45  E-value=0.037  Score=33.18  Aligned_cols=23  Identities=30%  Similarity=0.426  Sum_probs=20.1

Q ss_pred             CCCCCEEeCcCCCCCCCChhhhc
Q psy12423         21 FPRLKFLSAAQNRISHLPVFLRH   43 (567)
Q Consensus        21 l~~L~~L~Ls~n~i~~lp~~~~~   43 (567)
                      +++|++|+|++|.|..+|..+|.
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f~   23 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAFQ   23 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHcc
Confidence            56899999999999999988764

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.31  E-value=0.024  Score=30.30  Aligned_cols=17  Identities=41%  Similarity=0.817  Sum_probs=9.5

Q ss_pred             CCCCEEeCcCCCCCCCC
Q psy12423         22 PRLKFLSAAQNRISHLP   38 (567)
Q Consensus        22 ~~L~~L~Ls~n~i~~lp   38 (567)
                      ++|+.|+|++|+|+++|
T Consensus         1 ~~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    1 PNLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             TT-SEEEETSS--SSE-
T ss_pred             CccCEEECCCCCCCCCc
Confidence            46777888887777665

...

>KOG4308|consensus

Probab=93.85  E-value=0.00067  Score=72.30  Aligned_cols=59  Identities=31%  Similarity=0.353  Sum_probs=27.5

Q ss_pred             ccEEecccCCCCC-----cccccCCC-cCCcEEECcCCCCCCC-----ChhhhhccCCCccEEECCCCCCCC
Q psy12423        169 LQHLDISYNELES-----LPDWIDTC-PELETIFASHNRITQL-----PSQFFCRELGKLHTLQLSFNRLTS  229 (567)
Q Consensus       169 L~~L~Ls~n~l~~-----lp~~l~~l-~~L~~L~Ls~N~l~~l-----~~~~~~~~l~~L~~L~Ls~N~l~~  229 (567)
                      +..|++..|.+..     +...+..+ ..+++++++.|.|+.-     ...+..  ++.+++|.++.|.+..
T Consensus       235 ~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~--~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  235 LRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVS--CRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhh--hHHHHHhhcccCcccc
Confidence            4445555555542     12233333 4555666666655522     122222  3455666666665553

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=93.80  E-value=0.057  Score=32.34  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=10.8

Q ss_pred             CCCcEEEccCCCCCCCchhhh
Q psy12423        238 ASLKYLFLQSNSINILPQLFL  258 (567)
Q Consensus       238 ~~L~~L~Ls~N~l~~l~~~~l  258 (567)
                      ++|+.|+|++|+|+.+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=93.80  E-value=0.057  Score=32.34  Aligned_cols=21  Identities=29%  Similarity=0.357  Sum_probs=10.8

Q ss_pred             CCCcEEEccCCCCCCCchhhh
Q psy12423        238 ASLKYLFLQSNSINILPQLFL  258 (567)
Q Consensus       238 ~~L~~L~Ls~N~l~~l~~~~l  258 (567)
                      ++|+.|+|++|+|+.+|..+|
T Consensus         2 ~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        2 PNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCEEECCCCcCCcCCHHHc
Confidence            345555555555555555444

>KOG0473|consensus

Probab=92.59  E-value=0.0038  Score=58.48  Aligned_cols=93  Identities=22%  Similarity=0.186  Sum_probs=66.3

Q ss_pred             CCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhh
Q psy12423        180 ESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFL  258 (567)
Q Consensus       180 ~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l  258 (567)
                      +++|- .+......+.||++.|++-.+...+..  +..|..|+++.|.+.-+|..+.....+..+++..|..+..|... 
T Consensus        31 s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~--~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~-  107 (326)
T KOG0473|consen   31 SEIPVREIASFKRVTVLDLSSNRLVNLGKNFSI--LTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQ-  107 (326)
T ss_pred             cccchhhhhccceeeeehhhhhHHHhhccchHH--HHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccc-
Confidence            34542 355566777788888877766554433  66777888888888888887777777788888888888777753 


Q ss_pred             cCCCCCcEEEccCCcCC
Q psy12423        259 QNSSKLKVLNISKNCLK  275 (567)
Q Consensus       259 ~~l~~L~~L~Ls~N~l~  275 (567)
                      ...+.++++++-+|.|.
T Consensus       108 ~k~~~~k~~e~k~~~~~  124 (326)
T KOG0473|consen  108 KKEPHPKKNEQKKTEFF  124 (326)
T ss_pred             cccCCcchhhhccCcch
Confidence            67788888888777643

>KOG0473|consensus

Probab=91.53  E-value=0.0058  Score=57.31  Aligned_cols=84  Identities=19%  Similarity=0.076  Sum_probs=72.9

Q ss_pred             CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEc
Q psy12423        166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL  245 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  245 (567)
                      ....+.||++.|++..+-..|+-++.|..|+++.|.+..+|.....  ...+..+++..|..+..|.++...+.++++++
T Consensus        41 ~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q--~~e~~~~~~~~n~~~~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQ--QRETVNAASHKNNHSQQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             cceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHH--HHHHHHHHhhccchhhCCccccccCCcchhhh
Confidence            5678889999998887777788888999999999999999888765  67788899999999999999999999999999


Q ss_pred             cCCCCC
Q psy12423        246 QSNSIN  251 (567)
Q Consensus       246 s~N~l~  251 (567)
                      -+|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            998865

>KOG0699|consensus

Probab=91.26  E-value=0.25  Score=49.08  Aligned_cols=61  Identities=13%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             CCccccCCcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhh-hhHHHHHHHHHHHHHHhh
Q psy12423        294 LPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKET-ASDYMKYTMLTAHREIKD  354 (567)
Q Consensus       294 ~~~~~~~~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~-~~~~l~~a~l~~n~~i~~  354 (567)
                      ...|...-++|+++|||++.+++.+.+..+|.++.+....+.. ...++..+|+.++..+..
T Consensus        43 i~~ld~~t~mF~VYDGHGG~EVa~yca~kLPdflK~~k~yk~g~~~~aL~~AFl~fD~~l~~  104 (542)
T KOG0699|consen   43 IVDLDTDTHMFGVYDGHGGTEVAKYCAAKLPDFLKERKFYKAGDVAEALQKAFLDFDDFLRA  104 (542)
T ss_pred             cccccCcceEEEEecCCCcHHHHHHHHHhhhHHHHhHHhhhcccHHHHHHHHHhchhhhhcC
Confidence            3444555789999999999999999999999999998877654 489999999999885543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=86.39  E-value=0.46  Score=28.41  Aligned_cols=18  Identities=50%  Similarity=0.660  Sum_probs=15.1

Q ss_pred             CCCcEEEccCCcCCCCCC
Q psy12423        262 SKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       262 ~~L~~L~Ls~N~l~~ip~  279 (567)
                      ++|+.|++++|+|+++|+
T Consensus         2 ~~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        2 PSLKELNVSNNQLTSLPE   19 (26)
T ss_pred             cccceeecCCCccccCcc
Confidence            468888999999998886

>KOG3864|consensus

Probab=84.81  E-value=0.27  Score=45.51  Aligned_cols=33  Identities=6%  Similarity=0.137  Sum_probs=16.5

Q ss_pred             cccEEecccCCCCCc-ccccCCCcCCcEEECcCC
Q psy12423        168 RLQHLDISYNELESL-PDWIDTCPELETIFASHN  200 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N  200 (567)
                      .++.+|-++..|... -+.+..++.++.|.+.++
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~c  135 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANC  135 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccc
Confidence            455566665555422 133445555555555544

>KOG4341|consensus

Probab=84.75  E-value=0.12  Score=52.82  Aligned_cols=195  Identities=17%  Similarity=0.095  Sum_probs=106.9

Q ss_pred             CCCCCccEEEecCCC-CCCcc---ccCCCCCccEEEccCCCCCCCC-----CcccccCcEEEcccC-ccccee-----cC
Q psy12423         79 EVKGELTSVNLRSNQ-LKGTI---ILGNYGNLTTLDVSENSIESLD-----LGALNRLESIKCSRN-QLKTLV-----LN  143 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~-l~~~~---~l~~l~~L~~L~L~~n~l~~~~-----~~~l~~L~~L~ls~n-~l~~l~-----~~  143 (567)
                      ..+++|++|+++.+. +++..   ...++..++.+.+.+|.=.+..     -..+..+..+++..+ .++...     ..
T Consensus       213 ~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  213 EGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             HhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            346677777777663 33211   3444555666655544211110     112223334443332 333322     33


Q ss_pred             CCCCcEEEcCCCcc-ccccCCCC---CCcccEEecccCC-CCCc--ccccCCCcCCcEEECcCCCCCCCC-hhhhhccCC
Q psy12423        144 GSSLISVIAGNNKL-QSLIVSPR---PARLQHLDISYNE-LESL--PDWIDTCPELETIFASHNRITQLP-SQFFCRELG  215 (567)
Q Consensus       144 ~~~L~~L~l~~n~l-~~~~~~~~---~~~L~~L~Ls~n~-l~~l--p~~l~~l~~L~~L~Ls~N~l~~l~-~~~~~~~l~  215 (567)
                      +..|+.|..+++.- +......+   ..+|+.|.++.++ ++..  ...-.+++.|+.+++..+....-. ........+
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            55677777665432 22211111   6788888888875 3322  112246678888888888654211 111112277


Q ss_pred             CccEEECCCCCC-CC-----CchhhhCCCCCcEEEccCCCCC-CCchhhhcCCCCCcEEEccCCc
Q psy12423        216 KLHTLQLSFNRL-TS-----LPSLIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       216 ~L~~L~Ls~N~l-~~-----lp~~~~~l~~L~~L~Ls~N~l~-~l~~~~l~~l~~L~~L~Ls~N~  273 (567)
                      .|+.|.|+++.+ ++     +...-..+..|..+.|+++... +-.-..+..+++|+.+++-+++
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q  437 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQ  437 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechh
Confidence            899999998753 32     2333456778889999998654 4444456788888888887765

>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily

Probab=81.69  E-value=1.2  Score=26.78  Aligned_cols=18  Identities=28%  Similarity=0.451  Sum_probs=15.3

Q ss_pred             CCCCCEEeCcCCCCCCCC
Q psy12423         21 FPRLKFLSAAQNRISHLP   38 (567)
Q Consensus        21 l~~L~~L~Ls~n~i~~lp   38 (567)
                      +.+|+.|+|+.|+|+.+.
T Consensus         1 L~~L~~L~L~~NkI~~IE   18 (26)
T smart00365        1 LTNLEELDLSQNKIKKIE   18 (26)
T ss_pred             CCccCEEECCCCccceec
Confidence            468999999999998764

>KOG1947|consensus

Probab=81.38  E-value=0.9  Score=48.66  Aligned_cols=107  Identities=25%  Similarity=0.238  Sum_probs=47.7

Q ss_pred             CcccEEecccC-CCCC--cccccCCCcCCcEEECcCC--CCCCCC---hhhhhccCCCccEEECCCCC-CCC--Cchhhh
Q psy12423        167 ARLQHLDISYN-ELES--LPDWIDTCPELETIFASHN--RITQLP---SQFFCRELGKLHTLQLSFNR-LTS--LPSLIR  235 (567)
Q Consensus       167 ~~L~~L~Ls~n-~l~~--lp~~l~~l~~L~~L~Ls~N--~l~~l~---~~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~  235 (567)
                      +.|+.|.+..+ .+..  +-.....++.|+.|+++++  .+...+   ...... +++|+.|+++.+. ++.  +.....
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~-~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI-CRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhh-cCCcCccchhhhhccCchhHHHHHh
Confidence            44555555544 2222  2233445556666666552  111111   111111 4556666666654 443  112223


Q ss_pred             CCCCCcEEEccCCC-CCCCc-hhhhcCCCCCcEEEccCCcC
Q psy12423        236 QIASLKYLFLQSNS-INILP-QLFLQNSSKLKVLNISKNCL  274 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~-l~~l~-~~~l~~l~~L~~L~Ls~N~l  274 (567)
                      .+++|+.|.+.++. ++... ..+...++.|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            35566666655554 44211 12234556666666665543

>smart00364 LRR_BAC Leucine-rich repeats, bacterial type

Probab=80.24  E-value=1.2  Score=26.59  Aligned_cols=17  Identities=53%  Similarity=0.706  Sum_probs=7.5

Q ss_pred             CccEEECCCCCCCCCch
Q psy12423        216 KLHTLQLSFNRLTSLPS  232 (567)
Q Consensus       216 ~L~~L~Ls~N~l~~lp~  232 (567)
                      +|+.|++++|+++.+|+
T Consensus         3 ~L~~L~vs~N~Lt~LPe   19 (26)
T smart00364        3 SLKELNVSNNQLTSLPE   19 (26)
T ss_pred             ccceeecCCCccccCcc
Confidence            34444444444444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	567
3g06_A	622	The Salmonella Virulence Effector Ssph2 Functions A		1e-09
1p9a_G	290	Crystal Structure Of N-terminal Domain Of Human Pla		1e-09
1ook_G	290	Crystal Structure Of The Complex Of Platelet Recept		1e-09
3pmh_G	290	Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib		1e-09
1gwb_B	281	Structure Of Glycoprotein 1b Length = 281		2e-09
1m0z_A	290	Crystal Structure Of The Von Willebrand Factor Bind		2e-09
1sq0_B	288	Crystal Structure Of The Complex Of The Wild-Type V		2e-09
1m10_B	290	Crystal Structure Of The Complex Of Glycoprotein Ib		2e-09
1p8v_A	279	Crystal Structure Of The Complex Of Platelet Recept		3e-09
3p72_A	269	Structure Of Platelet Glycoprotein 1b Alpha With A		3e-09
1u0n_D	265	The Ternary Von Willebrand Factor A1-Glycoprotein I		4e-09
2o6s_A	208	Structural Diversity Of The Hagfish Variable Lympho		1e-07
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		4e-07
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		9e-07
1g9u_A	454	Crystal Structure Of Yopm-leucine Rich Effector Pro		3e-05
3o53_A	317	Crystal Structure Of Lrim1 Leucine-Rich Repeat Doma		7e-06
3oja_A	487	Crystal Structure Of Lrim1APL1C COMPLEX Length = 48		1e-05
4b8c_D	727	Nuclease Module Of The Yeast Ccr4-Not Complex Lengt		5e-05
3rfs_A	272	Design Of A Binding Scaffold Based On Variable Lymp		6e-05
2wfh_A	193	The Human Slit 2 Dimerization Domain D4 Length = 19		1e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-04
3m19_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		4e-04
3m18_A	251	Crystal Structure Of Variable Lymphocyte Receptor V		8e-04
3rfj_A	279	Design Of A Binding Scaffold Based On Variable Lymp		6e-04
3kj4_A	286	Structure Of Rat Nogo Receptor Bound To 1d9 Antagon		8e-04

>pdb|3G06|A Chain A, The Salmonella Virulence Effector Ssph2 Functions As A Novel E3 Ligase Length = 622

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 74/209 (35%), Positives = 99/209 (47%), Gaps = 33/209 (15%)
Query: 106 LTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR 165
           L TL+VS N + SL +     LE +    N L  L    S L  +    N+L SL V   
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLE-LSIFSNPLTHLPALPSGLCKLWIFGNQLTSLPV--L 139
Query: 166 PARLQHLDISYNELESLPDWIDTCP-ELETIFASHNRITQLPS-QFFCREL--------- 214
           P  LQ L +S N+L SLP      P EL  ++A +N++T LP      +EL         
Sbjct: 140 PPGLQELSVSDNQLASLP----ALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLAS 195
Query: 215 -----GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNI 269
                 +L+ L    NRLTSLP+L    + LK L +  N +  LP L     S+LK L +
Sbjct: 196 LPTLPSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPVL----PSELKELMV 248
Query: 270 SKNCLKMLPSLQKGFYLLNI--SQL-RLP 295
           S N L  LP L  G   L++  +QL RLP
Sbjct: 249 SGNRLTSLPMLPSGLLSLSVYRNQLTRLP 277

>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet Receptor Glycoprotein Ib-alpha At 1.7 Angstrom Resolution Length = 290

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 79  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N++  LP   L     L  L + +N L  +P    
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214

>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Human Alpha-thrombin Length = 290

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 79  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N++  LP   L     L  L + +N L  +P    
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214

>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib Interaction With Two Distinct Alpha-Thrombin Sites Length = 290

Iteration: 1
 Score = 61.2 bits (147), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 79  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N++  LP   L     L  L + +N L  +P    
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214

>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b Length = 281

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 35  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 79
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 80  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 133
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N++  LP   L     L  L + +N L  +P    
Sbjct: 134 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 193
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 194 GSHLLPFAFLHGNPWLCNCEIL 215

>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding Domain Of Glycoprotein Ib Alpha Length = 290

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 79  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N +  LP   L     L  L + +N L  +P    
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214

>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At 2.6 Angstrom Resolution Length = 288

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 79  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N +  LP   L     L  L + +N L  +P    
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214

>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha And The Von Willebrand Factor A1 Domain Length = 290

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 79  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N +  LP   L     L  L + +N L  +P    
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214

>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor Gpib-alpha And Alpha-thrombin At 2.6a Length = 279

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 90/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 79  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N++  LP   L     L  L + +N L  +P    
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214

>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound Peptide Inhibitor Length = 269

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 79  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N +  LP   L     L  L + +N L  +P    
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214

>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha- Botrocetin Complex Length = 265

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/202 (30%), Positives = 89/202 (44%), Gaps = 26/202 (12%)
Query: 107 TTLDVSENSIESLDLGAL---NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
           T L +SEN + +  L  L    RL  +   R +L  L ++G+  +               
Sbjct: 34  TILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV--------------- 78
Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
                L  LD+S+N+L+SLP    T P L  +  S NR+T LP     R LG+L  L L 
Sbjct: 79  -----LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL-RGLGELQELYLK 132
Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N L +L P L+     L+ L L +N +  LP   L     L  L + +N L  +P    
Sbjct: 133 GNELKTLPPGLLTPTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSLYTIPKGFF 192
Query: 283 GFYLLNISQLRL-PGFCNSDAL 303
           G +LL  + L   P  CN + L
Sbjct: 193 GSHLLPFAFLHGNPWLCNCEIL 214

>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors B59 Length = 208

Iteration: 1
 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)
Query: 166 PARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
           PA+  +LD+  N L+SLP+ + D    L  ++   N++  LP+  F  +L  L  L LS 
Sbjct: 27  PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVF-NKLTSLTYLNLST 85
Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           N+L SLP+ +  ++  LK L L +N +  LP       ++LK L + +N LK +P
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 79/150 (52%), Gaps = 9/150 (6%)
Query: 149 SVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPS 207
           SV   + KL + I S  PA  + LD+  N+L SLP        +L  ++ + N++  LP+
Sbjct: 20  SVDCSSKKLTA-IPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPA 78
Query: 208 QFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKV 266
             F +EL  L TL ++ N+L +LP  +  Q+ +L  L L  N +  LP     + +KL  
Sbjct: 79  GIF-KELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTY 137
Query: 267 LNISKNCLKMLPSLQKGFY--LLNISQLRL 294
           L++  N L+ LP   KG +  L ++ +LRL
Sbjct: 138 LSLGYNELQSLP---KGVFDKLTSLKELRL 164

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 52.0 bits (123), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 18/189 (9%)
Query: 106 LTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV-LNGSSLISVI-AGNNKLQSLIV 162
           L +L V  N++++L DL  L  LE +  S NQL+ L  L  SS + +I   NN L+ L  
Sbjct: 113 LKSLLVDNNNLKALSDLPPL--LEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKL-- 168
Query: 163 SPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL 222
              P  L+ +    N+LE LP+ +   P L  I+A +N + +LP          L ++  
Sbjct: 169 PDLPPSLEFIAAGNNQLEELPE-LQNLPFLTAIYADNNSLKKLPDLPLS-----LESIVA 222
Query: 223 SFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
             N L  LP L + +  L  ++  +N +  LP L       L+ LN+  N L  LP L +
Sbjct: 223 GNNILEELPEL-QNLPFLTTIYADNNLLKTLPDL----PPSLEALNVRDNYLTDLPELPQ 277
Query: 283 GFYLLNISQ 291
               L++S+
Sbjct: 278 SLTFLDVSE 286

>pdb|1G9U|A Chain A, Crystal Structure Of Yopm-leucine Rich Effector Protein From Yersinia Pestis Length = 454

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 68/140 (48%), Gaps = 18/140 (12%)
Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           L SLP+     P LE++ AS N +T+LP     + L  L     +   L+ LP L     
Sbjct: 83  LSSLPEL---PPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKALSDLPPL----- 132
Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG--FYLLNISQL-RLP 295
            L+YL + +N +  LP+L  QNSS LK++++  N LK LP L     F     +QL  LP
Sbjct: 133 -LEYLGVSNNQLEKLPEL--QNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 189
Query: 296 GFCNSDALIGIFDSGDNGDI 315
              N   L  I+   DN  +
Sbjct: 190 ELQNLPFLTAIY--ADNNSL 207

>pdb|3O53|A Chain A, Crystal Structure Of Lrim1 Leucine-Rich Repeat Domain Length = 317

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 56/207 (27%), Positives = 98/207 (47%), Gaps = 27/207 (13%)
Query: 78  PEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLG--------ALNRLES 129
           P  K EL  +NL SN L  T+ L +   L TLD++ N ++ L +G        A N +  
Sbjct: 56  PFTKLEL--LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113
Query: 130 IKCSRNQLKTLVLNGSSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESL--PDW 185
           + CSR Q K          ++   NNK+  L  +     +R+Q+LD+  NE++++   + 
Sbjct: 114 VSCSRGQGKK---------NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 186 IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245
             +   LE +   +N I  +  Q       KL TL LS N+L  +    +  A + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221
Query: 246 QSNSINILPQLFLQNSSKLKVLNISKN 272
           ++N + +L +  L+ S  L+  ++  N
Sbjct: 222 RNNKL-VLIEKALRFSQNLEHFDLRGN 247

>pdb|3OJA|A Chain A, Crystal Structure Of Lrim1APL1C COMPLEX Length = 487

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 54/197 (27%), Positives = 93/197 (47%), Gaps = 28/197 (14%)
Query: 78  PEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLG--------ALNRLES 129
           P  K EL  +NL SN L  T+ L +   L TLD++ N ++ L +G        A N +  
Sbjct: 56  PFTKLEL--LNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISR 113
Query: 130 IKCSRNQLKTLVLNGSSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESL--PDW 185
           + CSR Q K          ++   NNK+  L  +     +R+Q+LD+  NE++++   + 
Sbjct: 114 VSCSRGQGKK---------NIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164
Query: 186 IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245
             +   LE +   +N I  +  Q       KL TL LS N+L  +    +  A + ++ L
Sbjct: 165 AASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWISL 221
Query: 246 QSNSINILPQL--FLQN 260
           ++N + ++ +   F QN
Sbjct: 222 RNNKLVLIEKALRFSQN 238

>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex Length = 727

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 38/130 (29%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 151 IAGNNKLQSLIVSPRPAR----LQH-LDISYNELESLPDWIDTCPELETIFASHNRITQL 205
           I  ++ +++ +V P+ ++    L H LD+S  ++ ++   I     L  ++ + N +T+L
Sbjct: 203 IDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTEL 262
Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
           P++   + L  L  L LS NRLTSLP+ +     LKY +   N +  LP  F  N   L+
Sbjct: 263 PAEI--KNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVTTLPWEF-GNLCNLQ 319
Query: 266 VLNISKNCLK 275
            L +  N L+
Sbjct: 320 FLGVEGNPLE 329

>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 52/170 (30%), Positives = 86/170 (50%), Gaps = 34/170 (20%)
Query: 89  LRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIK---CSRNQLKTL---VL 142
           L  N+L     L    NLT L ++ N ++SL  G  ++L ++K      NQL++L   V 
Sbjct: 70  LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVF 129
Query: 143 NG-SSLISVIAGNNKLQSLI--VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
           +  ++L  +   +N+LQSL   V  +   L  LD+SYN+L+SLP         E +F   
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLP---------EGVF--- 177
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
           +++TQ            L  L+L  N+L S+P  +  ++ SL+Y++L  N
Sbjct: 178 DKLTQ------------LKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215

>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4 Length = 193

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 2/129 (1%)
Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
           + L +V+  +NK   ++    P  +  L +  N+   +P  +     L  I  S+NRI+ 
Sbjct: 9   TCLDTVVRCSNKGLKVLPKGIPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRIST 68
Query: 205 LPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSK 263
           L +Q F   + +L TL LS+NRL  +P      + SL+ L L  N I+++P+    + S 
Sbjct: 69  LSNQSF-SNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSA 127
Query: 264 LKVLNISKN 272
           L  L I  N
Sbjct: 128 LSHLAIGAN 136

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 51/194 (26%)
Query: 83  ELTSVNLRSNQLKGTIILGNYGNLT---TLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           +LT +NL  NQL+ T+  G + +LT   TL ++ N + SL LG  + L        QL  
Sbjct: 60  KLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-------TQLDK 111
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
           L L G+ L S+ +G        V  R  +L+ L ++ N+L+S+P              + 
Sbjct: 112 LYLGGNQLKSLPSG--------VFDRLTKLKELRLNTNQLQSIP------------AGAF 151
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINI------ 252
           +++T             L TL LS N+L S+P     ++  L+ + L  N  +       
Sbjct: 152 DKLT------------NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEIL 199
Query: 253 -LPQLFLQNSSKLK 265
            L Q   +NS+K+K
Sbjct: 200 YLSQWIRENSNKVK 213

>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R5.1 Length = 251

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 132 CSRNQLKTLV-LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW-IDTC 189
           C+ N+ K  V   G SL SV +G            PA  + LD+    L +L D      
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPSG-----------IPADTEKLDLQSTGLATLSDATFRGL 58
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
            +L  +   +N++  L +  F  +L +L TL L+ N+L SLP  +   +  L  L+L  N
Sbjct: 59  TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 249 SINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
            +  LP       +KLK L ++ N L+ +P+
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 43.1 bits (100), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/194 (27%), Positives = 88/194 (45%), Gaps = 51/194 (26%)
Query: 83  ELTSVNLRSNQLKGTIILGNYGNLT---TLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           +LT +NL  NQL+ T+  G + +LT   TL ++ N + SL LG  + L        QL  
Sbjct: 60  KLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHL-------TQLDK 111
Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
           L L G+ L S+ +G        V  R  +L+ L ++ N+L+S+P              + 
Sbjct: 112 LYLGGNQLKSLPSG--------VFDRLTKLKELRLNTNQLQSIP------------AGAF 151
Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINI------ 252
           +++T             L TL LS N+L S+P     ++  L+ + L  N  +       
Sbjct: 152 DKLT------------NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCETL 199
Query: 253 -LPQLFLQNSSKLK 265
            L Q   +NS+K+K
Sbjct: 200 YLSQWIRENSNKVK 213

>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor Vlra.R2.1 In Complex With Hen Egg Lysozyme Length = 251

Iteration: 1
 Score = 42.0 bits (97), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 15/151 (9%)
Query: 132 CSRNQLKTLV-LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW-IDTC 189
           C+ N+ K  V   G SL SV +G            PA  + LD+    L +L D      
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPSG-----------IPADTEKLDLQSTGLATLSDATFRGL 58
Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
            +L  +   +N++  L +  F  +L +L TL L+ N+L SLP  +   +  L  L+L  N
Sbjct: 59  TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 249 SINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
            +  LP       +KLK L ++ N L+ +P+
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPA 148

>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 47/162 (29%), Positives = 80/162 (49%), Gaps = 18/162 (11%)
Query: 89  LRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLI 148
           L  N+L     L    NLT L ++ N ++SL  G  ++L +       LK LVL  + L 
Sbjct: 70  LGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTN-------LKELVLVENQLQ 122
Query: 149 SVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPS 207
           S+  G        V  +   L +L + +N+L+SLP  + D    L  +   +N++  LP 
Sbjct: 123 SLPDG--------VFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPE 174
Query: 208 QFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
             F  +L +L  L L+ N+L S+P  +  ++ SL +++L +N
Sbjct: 175 GVF-DKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWLLNN 215

>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist Antibody Length = 286

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 28/74 (37%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 206 PSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKL 264
           P+ F  R LG LHTL L    L  L P L R +A+L+YL+LQ N++  LP    ++   L
Sbjct: 97  PTTF--RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNL 154
Query: 265 KVLNISKNCLKMLP 278
             L +  N +  +P
Sbjct: 155 THLFLHGNRIPSVP 168

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	567
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-30
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-29
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-26
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-25
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-14
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-11
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	4e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-21
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-20
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-30
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	6e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-10
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	8e-29
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-25
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-18
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-24
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-20
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	6e-19
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-29
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-24
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-23
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-17
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-28
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-25
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-24
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-23
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-22
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-19
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-27
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-16
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-12
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	6e-09
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-18
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	9e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-27
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-26
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	7e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-11
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-26
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-25
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-17
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-26
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-24
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-22
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-21
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	6e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-26
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-20
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	4e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	5e-15
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-26
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-24
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-21
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-20
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-19
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	7e-18
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-15
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	7e-25
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-25
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-23
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-20
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-25
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-22
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-21
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-13
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-25
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-19
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-15
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-25
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-24
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-22
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-20
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-19
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-18
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	9e-16
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-15
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-24
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-04
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	6e-24
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-23
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-22
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-11
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-08
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-24
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-23
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	6e-20
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-17
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-08
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	3e-04
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-24
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-19
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	9e-15
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-07
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-24
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-24
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	5e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-22
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	9e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	9e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-23
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-21
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-20
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	8e-14
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-22
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-14
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-10
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-09
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-06
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	6e-22
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	9e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-20
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-16
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-11
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-21
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-20
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-17
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	9e-16
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-15
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-21
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-15
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	8e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	6e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	9e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-07
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-20
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-18
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-20
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	4e-18
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-19
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-15
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-13
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-11
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-09
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	1e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-17
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	2e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-17
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-14
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	3e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-12
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	9e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-15
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-12
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-08
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-07
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-16
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	6e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-14
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	7e-16
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	9e-15
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-14
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-13
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	4e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-04
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-13
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-12
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-07
2iq1_A	274	Protein phosphatase 2C kappa, PPM1K; structural ge	1e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-12
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-10
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	8e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-12
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-11
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-11
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-12
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	8e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-11
3e6j_A	229	Variable lymphocyte receptor diversity region; var	5e-06
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	3e-11
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-09
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	3e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	9e-11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-10
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-10
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-10
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	6e-09
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	1e-09
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-05
2p8e_A	307	PPM1B beta isoform variant 6; structural genomics,	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-09
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
1a6q_A	382	Phosphatase 2C; catalytic mechanism, metalloenzyme	8e-09
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	1e-08
3d8k_A	377	PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR	4e-08
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	1e-07
3kdj_B	316	Protein phosphatase 2C 56; ABA, PYL1, abscisic aci	4e-07
3qn1_B	337	Protein phosphatase 2C 16; start domain, BET V dom	5e-07
2i0o_A	304	Ser/Thr phosphatase; beta sandwich, structural gen	3e-06
2isn_A	364	NYSGXRC-8828Z, phosphatase; pathogenic strain, pra	7e-06
2i44_A	324	Serine-threonine phosphatase 2C; PSI-2, 8817Z, str	2e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	2e-05
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	1e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	1e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	3e-04
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	4e-04

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  137 bits (347), Expect = 2e-35
 Identities = 77/283 (27%), Positives = 109/283 (38%), Gaps = 43/283 (15%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+      N LTE P    S   L   +     +S LP  L + +   NN +E       
Sbjct: 93  LESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY-LGVSNNQLEK------ 145

Query: 61  EEDFEQDEDGIIVERREPEVKG--ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
                            PE++    L  +++ +N L    +     +L  +    N +E 
Sbjct: 146 ----------------LPELQNSSFLKIIDVDNNSL--KKLPDLPPSLEFIAAGNNQLEE 187

Query: 119 L-DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
           L +L  L  L +I    N LK L     SL S++AGNN L+ L        L  +    N
Sbjct: 188 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 247

Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
            L++LPD     P LE +    N +T LP          L  L +S N  + L  L    
Sbjct: 248 LLKTLPDLP---PSLEALNVRDNYLTDLPE-----LPQSLTFLDVSENIFSGLSEL---P 296

Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL 280
            +L YL   SN I  L  L       L+ LN+S N L  LP+L
Sbjct: 297 PNLYYLNASSNEIRSLCDLP----PSLEELNVSNNKLIELPAL 335

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  122 bits (308), Expect = 3e-30
 Identities = 72/294 (24%), Positives = 111/294 (37%), Gaps = 37/294 (12%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           LQE     ++LTE P   ++         A +                      G  E+R
Sbjct: 13  LQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERN--------------APPGNGEQR 58

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
           E    +  D +           +   + L +  L  + +     +L +L  S NS+  L 
Sbjct: 59  EMAVSRLRDCL---------DRQAHELELNNLGL--SSLPELPPHLESLVASCNSLTELP 107

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
                 L+S+    N LK L      L  +   NN+L+ L      + L+ +D+  N L+
Sbjct: 108 -ELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK 166

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
            LPD     P LE I A +N++ +LP     + L  L  +    N L  LP L     SL
Sbjct: 167 KLPDLP---PSLEFIAAGNNQLEELPE---LQNLPFLTAIYADNNSLKKLPDL---PLSL 217

Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
           + +   +N +  LP+  LQN   L  +    N LK LP L      LN+    L
Sbjct: 218 ESIVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYL 269

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  120 bits (304), Expect = 1e-29
 Identities = 75/309 (24%), Positives = 121/309 (39%), Gaps = 50/309 (16%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+   VD N L + P   D  P L+F++A  N++  LP         L  +         
Sbjct: 155 LKIIDVDNNSLKKLP---DLPPSLEFIAAGNNQLEELPEL-----QNLPFLTAIYADNNS 206

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
            +               P++   L S+   +N L+    L N   LTT+    N +++L 
Sbjct: 207 LKKL-------------PDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLP 253

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
                 LE++    N L  L     SL  +    N    L  S  P  L +L+ S NE+ 
Sbjct: 254 DL-PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGL--SELPPNLYYLNASSNEIR 310

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
           SL D     P LE +  S+N++ +LP+        +L  L  SFN L  +P L     +L
Sbjct: 311 SLCDLP---PSLEELNVSNNKLIELPA-----LPPRLERLIASFNHLAEVPELP---QNL 359

Query: 241 KYLFLQSNSINILP-------QLFLQNS--------SKLKVLNISKNCLKMLPSLQKGFY 285
           K L ++ N +   P        L + +           LK L++  N L+  P + +   
Sbjct: 360 KQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPESVE 419

Query: 286 LLNISQLRL 294
            L ++  R+
Sbjct: 420 DLRMNSERV 428

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  110 bits (278), Expect = 3e-26
 Identities = 56/297 (18%), Positives = 97/297 (32%), Gaps = 74/297 (24%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L     D N L + P   D    L+ + A  N +  LP         L            
Sbjct: 197 LTAIYADNNSLKKLP---DLPLSLESIVAGNNILEELPEL-----QNLPF---------- 238

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  LT++   +N L    +     +L  L+V +N +  L 
Sbjct: 239 -----------------------LTTIYADNNLL--KTLPDLPPSLEALNVRDNYLTDLP 273

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
                 L  +  S N    L     +L  + A +N+++SL     P  L+ L++S N+L 
Sbjct: 274 -ELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL--CDLPPSLEELNVSNNKLI 330

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ---- 236
            LP      P LE + AS N + ++P          L  L + +N L   P +       
Sbjct: 331 ELPALP---PRLERLIASFNHLAEVPE-----LPQNLKQLHVEYNPLREFPDIPESVEDL 382

Query: 237 ------------IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
                         +LK L +++N +   P +       ++ L ++   +       
Sbjct: 383 RMNSHLAEVPELPQNLKQLHVETNPLREFPDIP----ESVEDLRMNSERVVDPYEFA 435

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  107 bits (270), Expect = 3e-25
 Identities = 56/274 (20%), Positives = 96/274 (35%), Gaps = 42/274 (15%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRH--PMSPLNNVIEHGIAE 58
           L+      N L E P    + P L  + A  N +  LP        ++  +N +      
Sbjct: 217 LESIVAGNNILEELP-ELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDL--- 272

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
                              PE+   LT +++  N    + +     NL  L+ S N I S
Sbjct: 273 -------------------PELPQSLTFLDVSENIF--SGLSELPPNLYYLNASSNEIRS 311

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           L       LE +  S N+L  L      L  +IA  N L  +     P  L+ L + YN 
Sbjct: 312 LC-DLPPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEV--PELPQNLKQLHVEYNP 368

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           L   PD  ++  +L      ++ + ++P          L  L +  N L   P +     
Sbjct: 369 LREFPDIPESVEDLR----MNSHLAEVPE-----LPQNLKQLHVETNPLREFPDIPE--- 416

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
           S++ L + S  +    +   + + KL+      +
Sbjct: 417 SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 73.1 bits (180), Expect = 6e-14
 Identities = 30/159 (18%), Positives = 57/159 (35%), Gaps = 17/159 (10%)

Query: 124 LNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP 183
              L+      + L  + +   ++ S     N       +  P   +  +++ + L    
Sbjct: 10  NTFLQEPLRHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCL 69

Query: 184 DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL 243
                  +   +  ++  ++ LP          L +L  S N LT LP L + + SL   
Sbjct: 70  -----DRQAHELELNNLGLSSLPE-----LPPHLESLVASCNSLTELPELPQSLKSLLVD 119

Query: 244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
                +++ LP         L+ L +S N L+ LP LQ 
Sbjct: 120 NNNLKALSDLP-------PLLEYLGVSNNQLEKLPELQN 151

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 63.5 bits (155), Expect = 6e-11
 Identities = 28/205 (13%), Positives = 57/205 (27%), Gaps = 50/205 (24%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L       N++       D  P L+ L+ + N++  LP                      
Sbjct: 299 LYYLNASSNEIRSLC---DLPPSLEELNVSNNKLIELPALP------------------- 336

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  L  +    N L    +     NL  L V  N +    
Sbjct: 337 ---------------------PRLERLIASFNHL--AEVPELPQNLKQLHVEYNPLREFP 373

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
                 +E ++ + + L  +     +L  +    N L+       P  ++ L ++   + 
Sbjct: 374 -DIPESVEDLRMN-SHLAEVPELPQNLKQLHVETNPLREF--PDIPESVEDLRMNSERVV 429

Query: 181 SLPDWI-DTCPELETIFASHNRITQ 204
              ++  +T  +LE     H+    
Sbjct: 430 DPYEFAHETTDKLEDDVFEHHHHHH 454

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  125 bits (317), Expect = 8e-32
 Identities = 59/319 (18%), Positives = 112/319 (35%), Gaps = 37/319 (11%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
           ++   ++   + E           ++ L    N I +LP  +   +  L       N + 
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 130

Query: 54  HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDV 111
                              + R       +LT++++ +N L+           +L  L +
Sbjct: 131 S------------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 172

Query: 112 SENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA--RL 169
           S N +  +DL  +  L     S N L TL     ++  + A +N +  +     P    L
Sbjct: 173 SSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNSINVV---RGPVNVEL 228

Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
             L + +N L     W+   P L  +  S+N + ++    F + + +L  L +S NRL +
Sbjct: 229 TILKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVA 286

Query: 230 LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP-SLQKGFYLLN 288
           L    + I +LK L L  N +  + +   Q    L+ L +  N +  L  S       L 
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHTLKNLT 345

Query: 289 ISQLRLPGFCNSDALIGIF 307
           +S               + 
Sbjct: 346 LSHNDWDCNSLRALFRNVA 364

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (308), Expect = 1e-30
 Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 45/309 (14%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
            +      + + + P    DSF +++ L+    +I  +  +       +       N I 
Sbjct: 47  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 106

Query: 54  HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLD 110
           + +     ++                    LT + L  N L  ++   I  N   LTTL 
Sbjct: 107 Y-LPPHVFQNVPL-----------------LTVLVLERNDLS-SLPRGIFHNTPKLTTLS 147

Query: 111 VSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRP 166
           +S N++E ++         L++++ S N+L  + L+   SL       N L +L     P
Sbjct: 148 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL---AIP 204

Query: 167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
             ++ LD S+N +  +        EL  +   HN +T             L  + LS+N 
Sbjct: 205 IAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNE 259

Query: 227 LTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
           L  +      ++  L+ L++ +N +  L     Q    LKVL++S N L  +   Q    
Sbjct: 260 LEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQ--PQ 316

Query: 286 LLNISQLRL 294
              +  L L
Sbjct: 317 FDRLENLYL 325

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  109 bits (275), Expect = 4e-26
 Identities = 61/288 (21%), Positives = 103/288 (35%), Gaps = 46/288 (15%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
           L    ++RNDL+  P     + P+L  LS + N +  +        + L      +N + 
Sbjct: 119 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 178

Query: 54  HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSE 113
           H                      +  +   L   N+  N L     L     +  LD S 
Sbjct: 179 HV---------------------DLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASH 214

Query: 114 NSIESLDLGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSPRPA---- 167
           NSI  +       L  +K   N L     +LN   L+ V    N+L+ +           
Sbjct: 215 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKI---MYHPFVKM 271

Query: 168 -RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
            RL+ L IS N L +L  +    P L+ +  SHN +  +       +  +L  L L  N 
Sbjct: 272 QRLERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDHNS 329

Query: 227 LTSLPSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNC 273
           + +L   +    +LK L L  N  +        +N ++  V +  ++C
Sbjct: 330 IVTLK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHC 375

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 95.5 bits (238), Expect = 2e-21
 Identities = 42/222 (18%), Positives = 90/222 (40%), Gaps = 28/222 (12%)

Query: 86  SVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTL-- 140
            +++++  +          N   +    +++  L    L +  ++E +  +  Q++ +  
Sbjct: 27  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT 86

Query: 141 -VLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPEL 192
                  ++  +  G N ++ L   P         L  L +  N+L SLP  I    P+L
Sbjct: 87  YAFAYAHTIQKLYMGFNAIRYL---PPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKL 143

Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI 252
            T+  S+N + ++    F +    L  LQLS NRLT +   +  I SL +  +  N ++ 
Sbjct: 144 TTLSMSNNNLERIEDDTF-QATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNLLST 200

Query: 253 LPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
           L          ++ L+ S N + ++         + ++ L+L
Sbjct: 201 LAIP-----IAVEELDASHNSINVVRGPV----NVELTILKL 233

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 92.4 bits (230), Expect = 2e-20
 Identities = 43/219 (19%), Positives = 84/219 (38%), Gaps = 16/219 (7%)

Query: 88  NLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSL 147
           N++  Q +   I  N          +  I+          E I  + N  K +    S++
Sbjct: 2   NVKPRQPEYKCIDSNLQYDCVF--YDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTM 57

Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLP 206
             + A    L S        +++ L+++  ++E +  +       ++ ++   N I  LP
Sbjct: 58  RKLPAA--LLDSF------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109

Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
              F + +  L  L L  N L+SLP  +      L  L + +N++  +     Q ++ L+
Sbjct: 110 PHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 168

Query: 266 VLNISKNCLKMLP-SLQKGFYLLNISQLRLPGFCNSDAL 303
            L +S N L  +  SL    +  N+S   L       A+
Sbjct: 169 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 207

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (322), Expect = 2e-31
 Identities = 74/280 (26%), Positives = 111/280 (39%), Gaps = 44/280 (15%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRH--PMSPLNNVIEHGIAE 58
           +    +  N+LT  P      P L+ L  + N+++ LPV       +S  +N + H    
Sbjct: 63  ITTLVIPDNNLTSLP---ALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTH---- 115

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
                              P +   L  + +  NQL  T +      L  L VS+N + S
Sbjct: 116 ------------------LPALPSGLCKLWIFGNQL--TSLPVLPPGLQELSVSDNQLAS 155

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           L     + L  +    NQL +L +  S L  +   +N+L SL     P+ L  L    N 
Sbjct: 156 LP-ALPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL--PTLPSELYKLWAYNNR 212

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           L SLP        L+ +  S NR+T LP         +L  L +S NRLTSLP L    +
Sbjct: 213 LTSLPALP---SGLKELIVSGNRLTSLPV-----LPSELKELMVSGNRLTSLPML---PS 261

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            L  L +  N +  LP+  +  SS    +N+  N L    
Sbjct: 262 GLLSLSVYRNQLTRLPESLIHLSS-ETTVNLEGNPLSERT 300

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  125 bits (314), Expect = 2e-30
 Identities = 73/340 (21%), Positives = 118/340 (34%), Gaps = 39/340 (11%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+   V  N LT  P        L   S     +  LP  L   +    N +        
Sbjct: 83  LRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALPSGLCK-LWIFGNQL-------- 133

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                            P +   L  +++  NQL    +      L  L    N + SL 
Sbjct: 134 --------------TSLPVLPPGLQELSVSDNQL--ASLPALPSELCKLWAYNNQLTSLP 177

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
           +   + L+ +  S NQL +L    S L  + A NN+L SL     P+ L+ L +S N L 
Sbjct: 178 ML-PSGLQELSVSDNQLASLPTLPSELYKLWAYNNRLTSL--PALPSGLKELIVSGNRLT 234

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
           SLP       EL+ +  S NR+T LP          L +L +  N+LT LP  +  ++S 
Sbjct: 235 SLPVLP---SELKELMVSGNRLTSLP-----MLPSGLLSLSVYRNQLTRLPESLIHLSSE 286

Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLN---ISKNCLKMLPSLQKGFYLLNISQLRLPGF 297
             + L+ N ++      L+  +     +   I  +        +     L  +   +P  
Sbjct: 287 TTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAR 346

Query: 298 CNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETA 337
               A    +      D A      + R+   E  +K+  
Sbjct: 347 EGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFIKDAG 386

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  121 bits (304), Expect = 4e-29
 Identities = 68/219 (31%), Positives = 94/219 (42%), Gaps = 24/219 (10%)

Query: 78  PEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRN 135
             +   +T++ +  N L  T +      L TL+VS N + SL      L  L        
Sbjct: 57  DCLPAHITTLVIPDNNL--TSLPALPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLT 114

Query: 136 QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETI 195
            L  L    S L  +    N+L SL     P  LQ L +S N+L SLP       EL  +
Sbjct: 115 HLPALP---SGLCKLWIFGNQLTSL--PVLPPGLQELSVSDNQLASLPALP---SELCKL 166

Query: 196 FASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQ 255
           +A +N++T LP          L  L +S N+L SLP+L    + L  L+  +N +  LP 
Sbjct: 167 WAYNNQLTSLPM-----LPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPA 218

Query: 256 LFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
           L     S LK L +S N L  LP L      L +S  RL
Sbjct: 219 LP----SGLKELIVSGNRLTSLPVLPSELKELMVSGNRL 253

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  117 bits (295), Expect = 4e-28
 Identities = 76/281 (27%), Positives = 107/281 (38%), Gaps = 48/281 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL---NNVIEHGIA 57
                V  + LT  P        +  L    N ++ LP      +  L    N +   + 
Sbjct: 42  NAVLNVGESGLTTLP--DCLPAHITTLVIPDNNLTSLPALPPE-LRTLEVSGNQLTS-LP 97

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
                               P    EL+  +     L           L  L +  N + 
Sbjct: 98  V------------------LPPGLLELSIFSNPLTHLPALP-----SGLCKLWIFGNQLT 134

Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
           SL       L+ +  S NQL +L    S L  + A NN+L SL     P+ LQ L +S N
Sbjct: 135 SLP-VLPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL--PMLPSGLQELSVSDN 191

Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
           +L SLP       EL  ++A +NR+T LP+         L  L +S NRLTSLP L  + 
Sbjct: 192 QLASLPTLP---SELYKLWAYNNRLTSLPA-----LPSGLKELIVSGNRLTSLPVLPSE- 242

Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
             LK L +  N +  LP L     S L  L++ +N L  LP
Sbjct: 243 --LKELMVSGNRLTSLPMLP----SGLLSLSVYRNQLTRLP 277

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  113 bits (283), Expect = 2e-26
 Identities = 53/190 (27%), Positives = 79/190 (41%), Gaps = 17/190 (8%)

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
               L+V E+ + +L       + ++    N L +L      L ++    N+L SL    
Sbjct: 41  GNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLTSL--PV 98

Query: 165 RPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
            P  L  L I  N L  LP        L  ++   N++T LP          L  L +S 
Sbjct: 99  LPPGLLELSIFSNPLTHLPALPS---GLCKLWIFGNQLTSLPV-----LPPGLQELSVSD 150

Query: 225 NRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGF 284
           N+L SLP+L    + L  L+  +N +  LP L     S L+ L++S N L  LP+L    
Sbjct: 151 NQLASLPAL---PSELCKLWAYNNQLTSLPMLP----SGLQELSVSDNQLASLPTLPSEL 203

Query: 285 YLLNISQLRL 294
           Y L     RL
Sbjct: 204 YKLWAYNNRL 213

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 88.4 bits (219), Expect = 1e-18
 Identities = 38/142 (26%), Positives = 59/142 (41%), Gaps = 14/142 (9%)

Query: 153 GNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCR 212
           G   +   + +        L++  + L +LPD +     + T+    N +T LP+     
Sbjct: 26  GRAAVVQKMRACLNNGNAVLNVGESGLTTLPDCL--PAHITTLVIPDNNLTSLPA----- 78

Query: 213 ELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
              +L TL++S N+LTSLP L   +  L         +  LP       S L  L I  N
Sbjct: 79  LPPELRTLEVSGNQLTSLPVLPPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGN 131

Query: 273 CLKMLPSLQKGFYLLNISQLRL 294
            L  LP L  G   L++S  +L
Sbjct: 132 QLTSLPVLPPGLQELSVSDNQL 153

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  117 bits (295), Expect = 2e-29
 Identities = 54/308 (17%), Positives = 111/308 (36%), Gaps = 54/308 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
            +  +V  + L +   +   S   +K L  + N +S +       ++P            
Sbjct: 12  YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS---AADLAPFTK--------- 59

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
                                   L  +NL SN L  T+ L +   L TLD++ N ++ L
Sbjct: 60  ------------------------LELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQEL 95

Query: 120 DLGALNRLESIKCSRNQLKTL-VLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLD 173
                  +E++  + N +  +    G    ++   NNK+  L            R+Q+LD
Sbjct: 96  --LVGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITML---RDLDEGCRSRVQYLD 150

Query: 174 ISYNELESLP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
           +  NE++++   +   +   LE +   +N I  +  Q       KL TL LS N+L  + 
Sbjct: 151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMG 207

Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQ 291
              +  A + ++ L++N + ++ +   + S  L+  ++  N                +  
Sbjct: 208 PEFQSAAGVTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQT 266

Query: 292 LRLPGFCN 299
           +       
Sbjct: 267 VAKQTVKK 274

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (292), Expect = 6e-29
 Identities = 43/207 (20%), Positives = 83/207 (40%), Gaps = 19/207 (9%)

Query: 83  ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQL 137
                 +  + LK  +  +  +  N+  LD+S N +  +    L    +LE +  S N L
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVL 70

Query: 138 KTL--VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETI 195
                + + S+L ++   NN +Q L        ++ L  + N +  +          + I
Sbjct: 71  YETLDLESLSTLRTLDLNNNYVQEL---LVGPSIETLHAANNNISRVS--CSRGQGKKNI 125

Query: 196 FASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP--SLIRQIASLKYLFLQSNSINIL 253
           + ++N+IT L          ++  L L  N + ++    L     +L++L LQ N I  +
Sbjct: 126 YLANNKITMLRDLDE-GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184

Query: 254 P-QLFLQNSSKLKVLNISKNCLKMLPS 279
             Q+       LK L++S N L  +  
Sbjct: 185 KGQVVFAK---LKTLDLSSNKLAFMGP 208

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  114 bits (287), Expect = 3e-28
 Identities = 45/291 (15%), Positives = 108/291 (37%), Gaps = 57/291 (19%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           ++E  +  N L++        F +L+ L+ + N +             L+          
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-----ESLST--------- 81

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
                                   L +++L +N ++    L    ++ TL  + N+I  +
Sbjct: 82  ------------------------LRTLDLNNNYVQE---LLVGPSIETLHAANNNISRV 114

Query: 120 DLGALNRLESIKCSRNQLKTL----VLNGSSLISVIAGNNKLQSL---IVSPRPARLQHL 172
                   ++I  + N++  L        S +  +    N++ ++    ++     L+HL
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232
           ++ YN +  +   +    +L+T+  S N++  +  +F       +  + L  N+L  +  
Sbjct: 175 NLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEK 231

Query: 233 LIRQIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
            +R   +L++  L+ N  +   L   F +N    +V  ++K  +K L    
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKN---QRVQTVAKQTVKKLTGQN 279

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 98.1 bits (245), Expect = 1e-22
 Identities = 38/191 (19%), Positives = 78/191 (40%), Gaps = 17/191 (8%)

Query: 99  ILGNYGNLTTLDVSENSIESLDLGALNRLESIKC---SRNQLKTL---VLNG-SSLISVI 151
           I  N        V+++S++           ++K    S N L  +    L   + L  + 
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLN 64

Query: 152 AGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFC 211
             +N L   +     + L+ LD++ N ++ L       P +ET+ A++N I+++      
Sbjct: 65  LSSNVLYETLDLESLSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISRVSCSRG- 119

Query: 212 RELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSINILP-QLFLQNSSKLKVLNI 269
                   + L+ N++T L  L     + ++YL L+ N I+ +       +S  L+ LN+
Sbjct: 120 ---QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 270 SKNCLKMLPSL 280
             N +  +   
Sbjct: 177 QYNFIYDVKGQ 187

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 40/295 (13%), Positives = 87/295 (29%), Gaps = 67/295 (22%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+   ++ N + E        P ++ L AA N IS +                       
Sbjct: 82  LRTLDLNNNYVQELLVG----PSIETLHAANNNISRVS---------------------- 115

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIES 118
               +                    ++ L +N++     +  G    +  LD+  N I++
Sbjct: 116 CSRGQG-----------------KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           ++   L            L+ L L            N +  +      A+L+ LD+S N+
Sbjct: 159 VNFAELAASSD------TLEHLNLQ----------YNFIYDVKGQVVFAKLKTLDLSSNK 202

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           L  +     +   +  I   +N++  +      R    L    L  N             
Sbjct: 203 LAFMGPEFQSAAGVTWISLRNNKLVLIEKAL--RFSQNLEHFDLRGNGFHCGTLRDFFSK 260

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
           + +   +   ++  L     +  +   + +    C + LP+     +   +  L 
Sbjct: 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAP----FADRLIALG 311

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 86.2 bits (214), Expect = 1e-18
 Identities = 32/178 (17%), Positives = 65/178 (36%), Gaps = 23/178 (12%)

Query: 137 LKTLVLNGSSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESLP-DWIDTCPELE 193
           +  +  NG+        ++ L+  + S       ++ LD+S N L  +    +    +LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL------------IRQI---- 237
            +  S N + +         L  L TL L+ N +  L               I ++    
Sbjct: 62  LLNLSSNVLYETLD---LESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR 118

Query: 238 -ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
               K ++L +N I +L  L     S+++ L++  N +  +   +       +  L L
Sbjct: 119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 69.2 bits (170), Expect = 5e-13
 Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIAS 239
           ++ +        +    + + + Q  +    +    +  L LS N L+ +  + +     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
           L+ L L SN +       L++ S L+ L+++ N ++ L     
Sbjct: 60  LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 59.2 bits (144), Expect = 9e-10
 Identities = 31/273 (11%), Positives = 66/273 (24%), Gaps = 81/273 (29%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
            +   +  N +T           R+++L    N I  +                      
Sbjct: 122 KKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN--------------------- 160

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
                              E+     +                   L  L++  N I  +
Sbjct: 161 -----------------FAELAASSDT-------------------LEHLNLQYNFIYDV 184

Query: 120 DLGA-LNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
                  +L+++  S N+L  +               + QS       A +  + +  N+
Sbjct: 185 KGQVVFAKLKTLDLSSNKLAFM-------------GPEFQSA------AGVTWISLRNNK 225

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           L  +   +     LE      N       + F  +  ++ T+      +  L     +  
Sbjct: 226 LVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEEC 283

Query: 239 SLKYLFLQSN-SINILPQLFLQNSSKLKVLNIS 270
           ++  L          LP  F      L   +  
Sbjct: 284 TVPTLGHYGAYCCEDLPAPFADRLIALGHHHHH 316

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  120 bits (302), Expect = 2e-29
 Identities = 57/308 (18%), Positives = 102/308 (33%), Gaps = 57/308 (18%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L       + +T+  G +     L  L    N I+ L +      S   N          
Sbjct: 44  LTSLDCHNSSITDMTGIEK-LTGLTKLICTSNNITTLDL------SQNTN---------- 86

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  LT +   SN+L   + +     LT L+   N +  LD
Sbjct: 87  -----------------------LTYLACDSNKLT-NLDVTPLTKLTYLNCDTNKLTKLD 122

Query: 121 LGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
           +     L  + C+RN L  + ++  + L  +    NK  + +      +L  LD S+N++
Sbjct: 123 VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKI 182

Query: 180 ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239
             L   +     L  +    N IT+L       +  +L  L  S N+LT +   +  +  
Sbjct: 183 TELD--VSQNKLLNRLNCDTNNITKLD----LNQNIQLTFLDCSSNKLTEID--VTPLTQ 234

Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ----KGFYLLNISQLRLP 295
           L Y     N +  L    +   SKL  L+  +  L  +          F      +++  
Sbjct: 235 LTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKEL 291

Query: 296 GFCNSDAL 303
              ++  L
Sbjct: 292 DVTHNTQL 299

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  118 bits (298), Expect = 8e-29
 Identities = 63/301 (20%), Positives = 105/301 (34%), Gaps = 68/301 (22%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L     D N LT+   +Q   P L +L+ A+N ++ + V      S              
Sbjct: 108 LTYLNCDTNKLTKLDVSQ--NPLLTYLNCARNTLTEIDV------SHNTQ---------- 149

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  LT ++   N+    + +     LTTLD S N I  LD
Sbjct: 150 -----------------------LTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELD 186

Query: 121 LGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
           +     L  + C  N +  L LN    L  +   +NKL  + V+P    L + D S N L
Sbjct: 187 VSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQ-LTYFDCSVNPL 245

Query: 180 ESLPDWIDTCPELETIFASHNRITQLPSQFFCR------------------ELGKLHTLQ 221
             L     T  +L T+      + ++      +                     +L+ L 
Sbjct: 246 TELDVS--TLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303

Query: 222 LSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
                +T L   + Q   L YL+L +  +  L    + +++KLK L+     ++   S+ 
Sbjct: 304 CQAAGITELD--LSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFSSVG 358

Query: 282 K 282
           K
Sbjct: 359 K 359

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  115 bits (291), Expect = 6e-28
 Identities = 61/330 (18%), Positives = 114/330 (34%), Gaps = 58/330 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L       N +TE   +Q     L  L+   N I+ L +      +              
Sbjct: 172 LTTLDCSFNKITELDVSQ--NKLLNRLNCDTNNITKLDL------NQNIQ---------- 213

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  LT ++  SN+L   I +     LT  D S N +  LD
Sbjct: 214 -----------------------LTFLDCSSNKLT-EIDVTPLTQLTYFDCSVNPLTELD 249

Query: 121 LGALNRLESIKCSRNQLKTL-VLNGSSLISV-IAGNNKLQSLIVSPRPARLQHLDISYNE 178
           +  L++L ++ C +  L  + + + + LI     G  K++ L V+    +L  LD     
Sbjct: 250 VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVT-HNTQLYLLDCQAAG 308

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           +  L   +   P+L  ++ ++  +T+L          KL +L      +    S + +I 
Sbjct: 309 ITELD--LSQNPKLVYLYLNNTELTELDV----SHNTKLKSLSCVNAHIQDFSS-VGKIP 361

Query: 239 SLKYLFLQSNSINILPQLFLQNSS-----KLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
           +L   F        +P+  L N+S        +L+   N + + P    G Y    + + 
Sbjct: 362 ALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMNIEPGD-GGVYDQATNTIT 420

Query: 294 LPGFCNSDALIGIFDSGDNGDIASTLVQSI 323
                  +  +    + +NG I  T+    
Sbjct: 421 WENLSTDNPAVTYTFTSENGAIVGTVTTPF 450

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  111 bits (280), Expect = 2e-26
 Identities = 62/282 (21%), Positives = 96/282 (34%), Gaps = 38/282 (13%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL---NNVIEHGIA 57
           L     D N LT          +L +L+   N+++ L V     ++ L    N +     
Sbjct: 87  LTYLACDSNKLTNLDVTP--LTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT---- 140

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
              E D                   +LT ++   N+    + +     LTTLD S N I 
Sbjct: 141 ---EIDVSH--------------NTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT 183

Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176
            LD+     L  + C  N +  L LN    L  +   +NKL  + V+P    L + D S 
Sbjct: 184 ELDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLTEIDVTPLTQ-LTYFDCSV 242

Query: 177 NELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236
           N L  L     T  +L T+      + ++          +L   Q    R       +  
Sbjct: 243 NPLTELDVS--TLSKLTTLHCIQTDLLEID----LTHNTQLIYFQAEGCRKIKELD-VTH 295

Query: 237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
              L  L  Q+  I  L    L  + KL  L ++   L  L 
Sbjct: 296 NTQLYLLDCQAAGITELD---LSQNPKLVYLYLNNTELTELD 334

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  107 bits (270), Expect = 3e-25
 Identities = 53/299 (17%), Positives = 108/299 (36%), Gaps = 72/299 (24%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L +     N++T    +Q     L +L+   N++++L V      +PL            
Sbjct: 66  LTKLICTSNNITTLDLSQ--NTNLTYLACDSNKLTNLDV------TPLTK---------- 107

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  LT +N  +N+L   + +     LT L+ + N++  +D
Sbjct: 108 -----------------------LTYLNCDTNKLT-KLDVSQNPLLTYLNCARNTLTEID 143

Query: 121 LGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           +    +L  + C  N+  T   V   + L ++    NK+  L VS +   L  L+   N 
Sbjct: 144 VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVS-QNKLLNRLNCDTNN 202

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           +  L   ++   +L  +  S N++T++        L +L     S N LT L   +  ++
Sbjct: 203 ITKLD--LNQNIQLTFLDCSSNKLTEIDV----TPLTQLTYFDCSVNPLTELD--VSTLS 254

Query: 239 SLKYLFLQSNSI-------------------NILPQLFLQNSSKLKVLNISKNCLKMLP 278
            L  L      +                     + +L + ++++L +L+     +  L 
Sbjct: 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELD 313

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.8 bits (218), Expect = 1e-18
 Identities = 33/179 (18%), Positives = 70/179 (39%), Gaps = 13/179 (7%)

Query: 102 NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQS 159
           N+ +         + +++    L  L S+ C  + +  +  +   + L  +I  +N + +
Sbjct: 19  NFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNITT 78

Query: 160 LIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHT 219
           L +S     L +L    N+L +L   +    +L  +    N++T+L       +   L  
Sbjct: 79  LDLSQNTN-LTYLACDSNKLTNLD--VTPLTKLTYLNCDTNKLTKLDV----SQNPLLTY 131

Query: 220 LQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           L  + N LT +   +     L  L    N    + +L +   ++L  L+ S N +  L 
Sbjct: 132 LNCARNTLTEID--VSHNTQLTELDCHLN--KKITKLDVTPQTQLTTLDCSFNKITELD 186

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  121 bits (304), Expect = 3e-29
 Identities = 59/308 (19%), Positives = 111/308 (36%), Gaps = 33/308 (10%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
           ++   ++   + E           ++ L    N I +LP  +   +  L       N + 
Sbjct: 77  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS 136

Query: 54  HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDV 111
                              + R       +LT++++ +N L+           +L  L +
Sbjct: 137 S------------------LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 112 SENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQH 171
           S N +  +DL  +  L     S N L TL     ++  + A +N +   +  P    L  
Sbjct: 179 SSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNSINV-VRGPVNVELTI 236

Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
           L + +N L     W+   P L  +  S+N + ++    F  ++ +L  L +S NRL +L 
Sbjct: 237 LKLQHNNLTDTA-WLLNYPGLVEVDLSYNELEKIMYHPF-VKMQRLERLYISNNRLVALN 294

Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP-SLQKGFYLLNIS 290
              + I +LK L L  N +  + +   Q    L+ L +  N +  L  S       L +S
Sbjct: 295 LYGQPIPTLKVLDLSHNHLLHVERNQPQFDR-LENLYLDHNSIVTLKLSTHHTLKNLTLS 353

Query: 291 QLRLPGFC 298
                   
Sbjct: 354 HNDWDCNS 361

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  116 bits (291), Expect = 2e-27
 Identities = 62/309 (20%), Positives = 115/309 (37%), Gaps = 45/309 (14%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
            +      + + + P    DSF +++ L+    +I  +  +       +       N I 
Sbjct: 53  QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR 112

Query: 54  HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLD 110
           + +     ++                    LT + L  N L  ++   I  N   LTTL 
Sbjct: 113 Y-LPPHVFQNVPL-----------------LTVLVLERNDLS-SLPRGIFHNTPKLTTLS 153

Query: 111 VSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRP 166
           +S N++E ++         L++++ S N+L  + L+   SL       N L +L     P
Sbjct: 154 MSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTL---AIP 210

Query: 167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
             ++ LD S+N +  +        EL  +   HN +T             L  + LS+N 
Sbjct: 211 IAVEELDASHNSINVVRG--PVNVELTILKLQHNNLTDTAW---LLNYPGLVEVDLSYNE 265

Query: 227 LTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
           L  +      ++  L+ L++ +N +  L     Q    LKVL++S N L  +   Q    
Sbjct: 266 LEKIMYHPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQ--PQ 322

Query: 286 LLNISQLRL 294
              +  L L
Sbjct: 323 FDRLENLYL 331

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  106 bits (265), Expect = 2e-24
 Identities = 80/430 (18%), Positives = 139/430 (32%), Gaps = 54/430 (12%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
           L    ++RNDL+  P     + P+L  LS + N +  +        + L      +N + 
Sbjct: 125 LTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT 184

Query: 54  HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSE 113
           H                      +  +   L   N+  N L     L     +  LD S 
Sbjct: 185 HV---------------------DLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASH 220

Query: 114 NSIESLDLGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSP--RPARL 169
           NSI  +       L  +K   N L     +LN   L+ V    N+L+ ++  P  +  RL
Sbjct: 221 NSINVVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRL 280

Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
           + L IS N L +L  +    P L+ +  SHN +  +       +  +L  L L  N + +
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLLHVERNQP--QFDRLENLYLDHNSIVT 338

Query: 230 LPSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNCL-----------KML 277
           L   +    +LK L L  N  +        +N ++  V +  ++C            K  
Sbjct: 339 LK--LSTHHTLKNLTLSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKES 396

Query: 278 PSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETA 337
                   L  I+   +          G   + D  +   +L   I +         E  
Sbjct: 397 DKPYLDRLLQYIALTSV--VEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQL 454

Query: 338 SDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGS 397
              +        +   + + +  L   L H  +     RY L    +  +   L +    
Sbjct: 455 EAEVNELRAEVQQLTNEQIQQEQLLQGL-HAEIDTNLRRYRLPKDGLARSSDNLNKVFTH 513

Query: 398 LTFTHAPTLS 407
           L    A  L 
Sbjct: 514 LKERQAFKLR 523

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 93.1 bits (231), Expect = 4e-20
 Identities = 37/199 (18%), Positives = 72/199 (36%), Gaps = 25/199 (12%)

Query: 86  SVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGS 145
            +++++  +          N   +    +++  L    L+          Q++ L LN  
Sbjct: 33  HIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSF-------RQVELLNLN-- 83

Query: 146 SLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRI 202
                   + +++ +          +Q L + +N +  LP  +    P L  +    N +
Sbjct: 84  --------DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL 135

Query: 203 TQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNS 261
           + LP   F     KL TL +S N L  +     +   SL+ L L SN +  +    + + 
Sbjct: 136 SSLPRGIF-HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS- 193

Query: 262 SKLKVLNISKNCLKMLPSL 280
             L   N+S N L  L   
Sbjct: 194 --LFHANVSYNLLSTLAIP 210

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 89.2 bits (221), Expect = 6e-19
 Identities = 43/219 (19%), Positives = 83/219 (37%), Gaps = 16/219 (7%)

Query: 88  NLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSL 147
           N++  Q +   I  N          +  I+          E I  +    K +    S++
Sbjct: 8   NVKPRQPEYKCIDSNLQYDCVF--YDVHIDMQTQDVYFGFEDITLNN--QKIVTFKNSTM 63

Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLP 206
             + A    L S        +++ L+++  ++E +  +       ++ ++   N I  LP
Sbjct: 64  RKLPAAL--LDSF------RQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115

Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
              F + +  L  L L  N L+SLP  I      L  L + +N++  +     Q ++ L+
Sbjct: 116 PHVF-QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQ 174

Query: 266 VLNISKNCLKMLP-SLQKGFYLLNISQLRLPGFCNSDAL 303
            L +S N L  +  SL    +  N+S   L       A+
Sbjct: 175 NLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAV 213

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  120 bits (303), Expect = 9e-29
 Identities = 51/312 (16%), Positives = 100/312 (32%), Gaps = 71/312 (22%)

Query: 1   LQEFRVDRNDLTEFPGNQD--SFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
           +Q F +  N+L EFP +       +L  L    N++ HL  F                  
Sbjct: 550 IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF-----GTNVK-------- 596

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSI 116
                                    LT + L  NQ++            +  L  S N +
Sbjct: 597 -------------------------LTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKL 631

Query: 117 ESL----DLGALNRLESIKCSRNQLKTL---------VLNGSSLISVIAGNNKLQSLIVS 163
           + +    +  ++  + S+  S N++ +             G +  +V    N++Q     
Sbjct: 632 KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTE 691

Query: 164 --PRPARLQHLDISYNELESLPDW--------IDTCPELETIFASHNRITQLPSQFFCRE 213
                + +  + +S N + S+P+               L TI    N++T L   F    
Sbjct: 692 LFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATT 751

Query: 214 LGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLF------LQNSSKLKVL 267
           L  L  + +S+N  +S P+     + LK   ++        ++       +     L  L
Sbjct: 752 LPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL 811

Query: 268 NISKNCLKMLPS 279
            I  N ++ +  
Sbjct: 812 QIGSNDIRKVDE 823

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  105 bits (263), Expect = 7e-24
 Identities = 43/241 (17%), Positives = 88/241 (36%), Gaps = 44/241 (18%)

Query: 83  ELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSIESL---------DLGALNRLESI 130
           + T +   +N++  T I   +     L  +  + +              +     + E+ 
Sbjct: 426 KDTQIGNLTNRI--TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENE 483

Query: 131 KCSRNQLKTL-VLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELES-- 181
           + S + LK L  +        +     +  L     P        LQ L+I+ N   S  
Sbjct: 484 ELSWSNLKDLTDVE-------LYNCPNMTQL-----PDFLYDLPELQSLNIACNRGISAA 531

Query: 182 --------LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233
                   L D  DT P+++  +  +N + + P+    +++ KL  L    N++  L + 
Sbjct: 532 QLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAF 591

Query: 234 IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
                 L  L L  N I  +P+ F   + +++ L  S N LK +P++     +  +  + 
Sbjct: 592 G-TNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVD 650

Query: 294 L 294
            
Sbjct: 651 F 651

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  104 bits (260), Expect = 2e-23
 Identities = 53/322 (16%), Positives = 97/322 (30%), Gaps = 89/322 (27%)

Query: 1   LQEFRVDRNDLTEFP--GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
           ++      N L   P   N  S   +  +  + N+I      +   M     +       
Sbjct: 621 VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGI------- 673

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSI 116
                                     ++V L  N+++     +      ++T+ +S N +
Sbjct: 674 ------------------------NASTVTLSYNEIQKFPTELFATGSPISTIILSNNLM 709

Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176
            S+               N LK    N  +                      L  +D+ +
Sbjct: 710 TSI-------------PENSLKPKDGNYKNTYL-------------------LTTIDLRF 737

Query: 177 NELESLPDWIDTC--PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR-------L 227
           N+L SL D       P L  +  S+N  +  P+Q       +L    +   R       L
Sbjct: 738 NKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPL--NSSQLKAFGIRHQRDAEGNRIL 795

Query: 228 TSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP------SLQ 281
              P+ I    SL  L + SN I  + +        L +L+I+ N    +        ++
Sbjct: 796 RQWPTGITTCPSLIQLQIGSNDIRKVDEKLTPQ---LYILDIADNPNISIDVTSVCPYIE 852

Query: 282 KGFYLLNISQLRLPGFCNSDAL 303
            G Y+L   + +       DAL
Sbjct: 853 AGMYVLLYDKTQD--IRGCDAL 872

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 85.7 bits (212), Expect = 1e-17
 Identities = 30/232 (12%), Positives = 67/232 (28%), Gaps = 24/232 (10%)

Query: 82  GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           G +T ++L     KG +   +G    L  L    +S         +   +   S  +   
Sbjct: 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 140 LVLNGSSLISVIAGNNKLQSL----------IVSPRPARLQHL-----DISYNELESLPD 184
           + ++   +         L  L          +   +      L         N +  +  
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISK 442

Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
            I    +L+ I+ +++  T          +           +  +       +  L  + 
Sbjct: 443 AIQRLTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497

Query: 245 LQSNS-INILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLP 295
           L +   +  LP     +  +L+ LNI+ N       L+  +  L   +   P
Sbjct: 498 LYNCPNMTQLPDFL-YDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 50.3 bits (120), Expect = 1e-06
 Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 2/99 (2%)

Query: 197 ASHNRITQLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSINILPQ 255
              +     P        G++  L L+       +P  I Q+  LK L   ++S  +  +
Sbjct: 306 KELDMWGDQPGVD-LDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGR 364

Query: 256 LFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
           LF        +    K+ ++M        Y   ++   L
Sbjct: 365 LFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDL 403

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  117 bits (296), Expect = 6e-28
 Identities = 61/317 (19%), Positives = 115/317 (36%), Gaps = 54/317 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEH----- 54
           L+   ++ ND+     N       LK+LS + +  S   +     +S  ++ +       
Sbjct: 331 LEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTK 390

Query: 55  -GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLD 110
             I++   + F                   L  ++L  N++   +         N+  + 
Sbjct: 391 NKISKIESDAFSWLG--------------HLEVLDLGLNEIGQELTGQEWRGLENIFEIY 436

Query: 111 VSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRP---- 166
           +S N    L   +   + S       L+ L+L              L+++  SP P    
Sbjct: 437 LSYNKYLQLTRNSFALVPS-------LQRLMLR----------RVALKNVDSSPSPFQPL 479

Query: 167 ARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRE-------LGKLH 218
             L  LD+S N + ++  D ++   +LE +   HN + +L               L  LH
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 219 TLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
            L L  N    +   + + +  LK + L  N++N LP     N   LK LN+ KN +  +
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSV 599

Query: 278 PSLQKGFYLLNISQLRL 294
                G    N+++L +
Sbjct: 600 EKKVFGPAFRNLTELDM 616

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  108 bits (272), Expect = 6e-25
 Identities = 58/331 (17%), Positives = 110/331 (33%), Gaps = 59/331 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLPVFLRHPMSPL------NNV 51
           L+   +  N+L++      +F     L  L    N I  +          L      +N 
Sbjct: 75  LKVLNLQHNELSQLS--DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNG 132

Query: 52  IEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQL----KGTIILGNYGNLT 107
           +                     +         L  + L +N++       + +    +L 
Sbjct: 133 LSS------------------TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 108 TLDVSENSIESLDLGALNRLESIKC---SRNQLKTLV-------LNGSSLISVIAGNNKL 157
            L++S N I+    G  + +  +     +  QL   +       L  +S+ ++   N++L
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 158 QSLIVSP----RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCR 212
            +   +     +   L  LD+SYN L  +  D     P+LE  F  +N I  L S     
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSL-H 293

Query: 213 ELGKLHTLQL---------SFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSS 262
            L  +  L L         S   L  +     + +  L++L ++ N I  +         
Sbjct: 294 GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLI 353

Query: 263 KLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
            LK L++S +   +     + F  L  S L 
Sbjct: 354 NLKYLSLSNSFTSLRTLTNETFVSLAHSPLH 384

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  107 bits (268), Expect = 2e-24
 Identities = 56/299 (18%), Positives = 105/299 (35%), Gaps = 56/299 (18%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           +    +  N L   P      + +L  L    N IS L          L           
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE---PELCQKLPM--------- 74

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
                                   L  +NL+ N+L            NLT L +  NSI+
Sbjct: 75  ------------------------LKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQ 110

Query: 118 SLD---LGALNRLESIKCSRNQLKTLVLNG----SSLISVIAGNNKLQSLIVSP----RP 166
            +          L ++  S N L +  L       +L  ++  NNK+Q+L          
Sbjct: 111 KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFAN 170

Query: 167 ARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELG--KLHTLQLS 223
           + L+ L++S N+++   P        L  +F ++ ++    ++  C EL    +  L LS
Sbjct: 171 SSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLS 230

Query: 224 FNRLTSLPSLI---RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
            ++L++  +      +  +L  L L  N++N++         +L+   +  N ++ L S
Sbjct: 231 NSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFS 289

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  105 bits (265), Expect = 4e-24
 Identities = 55/221 (24%), Positives = 82/221 (37%), Gaps = 28/221 (12%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
           +T +NL  NQL+         Y  LT+LDV  N+I  L+     +L         LK L 
Sbjct: 27  ITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLP-------MLKVLN 79

Query: 142 LNGSSLISVIAGNNKLQSLIVS--PRPARLQHLDISYNELESL-PDWIDTCPELETIFAS 198
           L           +N+L  L          L  L +  N ++ +  +       L T+  S
Sbjct: 80  LQ----------HNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLS 129

Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS---LIRQIASLKYLFLQSNSINILPQ 255
           HN ++        + L  L  L LS N++ +L S    I   +SLK L L SN I     
Sbjct: 130 HNGLSSTKLGTQVQ-LENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

Query: 256 LFLQNSSKLKVLNISKNCLK--MLPSLQKGFYLLNISQLRL 294
                  +L  L ++   L   +   L       +I  L L
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSL 229

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  103 bits (260), Expect = 1e-23
 Identities = 58/302 (19%), Positives = 101/302 (33%), Gaps = 53/302 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           L    +  N+L     +     P+L++     N I HL     H +  L NV        
Sbjct: 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLF---SHSLHGLFNV-------- 298

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
                           R   +K   T  ++    L             L  L++ +N I 
Sbjct: 299 ----------------RYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342

Query: 118 SLDLGALNRLESIKC---SRNQLKTLVLNGSSLISVIAGNNKLQSL------IVSPRP-- 166
            +       L ++K    S +      L   + +S+   ++ L  L      I       
Sbjct: 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSL--AHSPLHILNLTKNKISKIESDA 400

Query: 167 ----ARLQHLDISYNELESL--PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTL 220
                 L+ LD+  NE+              +  I+ S+N+  QL    F   +  L  L
Sbjct: 401 FSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFA-LVPSLQRL 459

Query: 221 QLSFNRLTSL---PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
            L    L ++   PS  + + +L  L L +N+I  +    L+   KL++L++  N L  L
Sbjct: 460 MLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARL 519

Query: 278 PS 279
             
Sbjct: 520 WK 521

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 98.9 bits (247), Expect = 7e-22
 Identities = 53/295 (17%), Positives = 97/295 (32%), Gaps = 62/295 (21%)

Query: 9   NDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDE 68
             LT+ P   D    +  L+   N++  LP       +  +                   
Sbjct: 14  LKLTQVP--DDLPTNITVLNLTHNQLRRLP---AANFTRYSQ------------------ 50

Query: 69  DGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNR 126
                          LTS+++  N +      +      L  L++  N +  L       
Sbjct: 51  ---------------LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAF 95

Query: 127 LESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDW 185
             +       L  L L  +S+  +                  L  LD+S+N L S     
Sbjct: 96  CTN-------LTELHLMSNSIQKIKNNP--FVKQ------KNLITLDLSHNGLSSTKLGT 140

Query: 186 IDTCPELETIFASHNRITQLPSQFFCR-ELGKLHTLQLSFNRLTSL-PSLIRQIASLKYL 243
                 L+ +  S+N+I  L S+         L  L+LS N++    P     I  L  L
Sbjct: 141 QVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGL 200

Query: 244 FLQSNSIN--ILPQLFLQ-NSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRL 294
           FL +  +   +  +L L+  ++ ++ L++S + L    +    G    N++ L L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 90.4 bits (225), Expect = 3e-19
 Identities = 35/191 (18%), Positives = 67/191 (35%), Gaps = 23/191 (12%)

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
           +    D S   +  +       +  +  + NQL+ L                        
Sbjct: 5   SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRL------------PAANFTRY---- 48

Query: 165 RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
             ++L  LD+ +N +  L P+     P L+ +   HN ++QL  + F      L  L L 
Sbjct: 49  --SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTF-AFCTNLTELHLM 105

Query: 224 FNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
            N +  +  +   +  +L  L L  N ++            L+ L +S N ++ L S  +
Sbjct: 106 SNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS--E 163

Query: 283 GFYLLNISQLR 293
              +   S L+
Sbjct: 164 ELDIFANSSLK 174

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 55.8 bits (135), Expect = 3e-08
 Identities = 43/261 (16%), Positives = 75/261 (28%), Gaps = 77/261 (29%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           + E  +  N   +   N     P L+ L   +  + ++      P  PL N         
Sbjct: 432 IFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSP-SPFQPLRN--------- 481

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
                                   LT ++L +N +      +L     L  LD+  N++ 
Sbjct: 482 ------------------------LTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLA 517

Query: 118 SLD-----------LGALNRLESIKCSRNQLKTL----VLNGSSLISVIAGNNKLQSLIV 162
            L            L  L+ L  +    N    +      +   L  +  G N L +L  
Sbjct: 518 RLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPA 577

Query: 163 S--PRPARLQHLDISYNELESLPD-------------------WIDTCPELET----IFA 197
           S       L+ L++  N + S+                     +  TC  +      I  
Sbjct: 578 SVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINE 637

Query: 198 SHNRITQLPSQFFCRELGKLH 218
           +H  I +L S + C      H
Sbjct: 638 THTNIPELSSHYLCNTPPHYH 658

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  115 bits (289), Expect = 1e-27
 Identities = 50/340 (14%), Positives = 117/340 (34%), Gaps = 58/340 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           ++E  +  N L++        F +L+ L+ + N +             L+          
Sbjct: 36  VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDL-----ESLST--------- 81

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
                                   L +++L +N ++    L    ++ TL  + N+I  +
Sbjct: 82  ------------------------LRTLDLNNNYVQE---LLVGPSIETLHAANNNISRV 114

Query: 120 DLGALNRLESIKCSRNQLKTL----VLNGSSLISVIAGNNKLQSL---IVSPRPARLQHL 172
                   ++I  + N++  L        S +  +    N++ ++    ++     L+HL
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232
           ++ YN +  +   +    +L+T+  S N++  +  +F       +  + L  N+L  +  
Sbjct: 175 NLQYNFIYDVKGQV-VFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEK 231

Query: 233 LIRQIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNIS 290
            +R   +L++  L+ N  +   L   F +N    +V  ++K  +K L    +       +
Sbjct: 232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKN---QRVQTVAKQTVKKLTGQNEEE-CTVPT 287

Query: 291 QLRLPGFCNSDALIGIFDSGDNGDIASTLVQSIPRILLEE 330
                 +C  D      D           + S      E 
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETER 327

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  114 bits (287), Expect = 2e-27
 Identities = 54/305 (17%), Positives = 108/305 (35%), Gaps = 38/305 (12%)

Query: 11  LTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIEHGIAEEREEDF 64
           + E   N     R K      + +      LR     +       N +    A +     
Sbjct: 2   IHEIKQNG---NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAAD----L 54

Query: 65  EQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGAL 124
                             +L  +NL SN L  T+ L +   L TLD++ N ++   L   
Sbjct: 55  AP--------------FTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE--LLVG 98

Query: 125 NRLESIKCSRNQLKTL-VLNGSSLISVIAGNNKLQSLIVS--PRPARLQHLDISYNELES 181
             +E++  + N +  +    G    ++   NNK+  L        +R+Q+LD+  NE+++
Sbjct: 99  PSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 182 LP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239
           +   +   +   LE +   +N I  +  Q       KL TL LS N+L  +    +  A 
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAG 215

Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCN 299
           + ++ L++N + ++ +   + S  L+  ++  N                +  +       
Sbjct: 216 VTWISLRNNKLVLIEKAL-RFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKK 274

Query: 300 SDALI 304
                
Sbjct: 275 LTGQN 279

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 82.2 bits (203), Expect = 1e-16
 Identities = 39/300 (13%), Positives = 81/300 (27%), Gaps = 36/300 (12%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIEH 54
           ++      N+++    +       K +  A N+I+ L        S +       N I+ 
Sbjct: 101 IETLHAANNNISRVSCS--RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158

Query: 55  GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSEN 114
               E     +                  L  +NL+ N +        +  L TLD+S N
Sbjct: 159 VNFAELAASSDT-----------------LEHLNLQYNFIYDVKGQVVFAKLKTLDLSSN 201

Query: 115 SIESLD--LGALNRLESIKCSRNQLKTL---VLNGSSLISVIAGNNKLQSLIVSPRPARL 169
            +  +     +   +  I    N+L  +   +    +L       N      +    ++ 
Sbjct: 202 KLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 170 QHL-DISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCR----ELGKLHTLQLS 223
           Q +  ++   ++ L     + C               LP+ F  R    +  +   L   
Sbjct: 262 QRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ 321

Query: 224 FNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG 283
            +    L       A  + +         +             L   K  L    S  + 
Sbjct: 322 GSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRR 381

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.9 bits (166), Expect = 3e-12
 Identities = 40/273 (14%), Positives = 69/273 (25%), Gaps = 49/273 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+   +  N L        S   + ++S   N++  +   LR   +              
Sbjct: 193 LKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVLIEKALRFSQN-------------- 238

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  L   +LR N         + G L         ++++ 
Sbjct: 239 -----------------------LEHFDLRGNGF-------HCGTLRDFFSKNQRVQTVA 268

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
              + +L         + TL   G+     +        LI   R      L    +E E
Sbjct: 269 KQTVKKLTGQNEEECTVPTLGHYGAYCCEDL-PAPFADRLIALKRK-EHALLSGQGSETE 326

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR-QIAS 239
            L    +       I A   +   +  Q          TL+     L    S  R   A 
Sbjct: 327 RLECERENQARQREIDALKEQYRTVIDQVT-LRKQAKITLEQKKKALDEQVSNGRRAHAE 385

Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
           L     Q+     L     +  S L++L     
Sbjct: 386 LDGTLQQAVGQIELQHAT-EEQSPLQLLRAIVK 417

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 67.2 bits (164), Expect = 5e-12
 Identities = 17/103 (16%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIAS 239
           ++ +        +    + + + Q  +    +    +  L LS N L+ +  + +     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTK 59

Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
           L+ L L SN +       L++ S L+ L+++ N ++ L     
Sbjct: 60  LELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLVGPS 100

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 57.5 bits (139), Expect = 6e-09
 Identities = 28/281 (9%), Positives = 67/281 (23%), Gaps = 49/281 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           +    +  N L            L+      N        LR   S              
Sbjct: 216 VTWISLRNNKLVLIEKALRFSQNLEHFDLRGNGFHCGT--LRDFFSKNQR---------- 263

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  + +V  ++ +             T         E L 
Sbjct: 264 -----------------------VQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
               +RL ++K   + L +   + +  +     N            AR + +D    +  
Sbjct: 301 APFADRLIALKRKEHALLSGQGSETERLECEREN-----------QARQREIDALKEQYR 349

Query: 181 SLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239
           ++ D +        T+      + +  S    R   +L            L     + + 
Sbjct: 350 TVIDQVTLRKQAKITLEQKKKALDEQVSNGR-RAHAELDGTLQQAVGQIELQHATEEQSP 408

Query: 240 LKYLFLQSNSINILP-QLFLQNSSKLKVLNISKNCLKMLPS 279
           L+ L         +  +     ++ ++  ++ ++    L  
Sbjct: 409 LQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAE 449

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (278), Expect = 3e-27
 Identities = 47/230 (20%), Positives = 85/230 (36%), Gaps = 21/230 (9%)

Query: 83  ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGA-----LNRLESIKCSRN 135
             T + L SN+L+     +      LT L +S N +      +        L+ +  S N
Sbjct: 29  SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88

Query: 136 QLKTLV---LNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPD-WI 186
            + T+    L    L  +   ++ L+ +  S          L +LDIS+       +   
Sbjct: 89  GVITMSSNFLGLEQLEHLDFQHSNLKQM--SEFSVFLSLRNLIYLDISHTHTRVAFNGIF 146

Query: 187 DTCPELETIFASHNR-ITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLF 244
           +    LE +  + N          F  EL  L  L LS  +L  L       ++SL+ L 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIF-TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLN 205

Query: 245 LQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
           +  N+   L     +  + L+VL+ S N +      +   +  +++ L L
Sbjct: 206 MSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  100 bits (252), Expect = 9e-24
 Identities = 40/197 (20%), Positives = 75/197 (38%), Gaps = 16/197 (8%)

Query: 85  TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
           T +   S  L  ++  G   + T L++  N ++SL  G  ++L        QL  L L+ 
Sbjct: 10  TEIRCNSKGLT-SVPTGIPSSATRLELESNKLQSLPHGVFDKL-------TQLTKLSLSS 61

Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
           + L      +              L++LD+S+N + ++        +LE +   H+ + Q
Sbjct: 62  NGLSFKGCCSQSDFGT------TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQ 115

Query: 205 LPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNS-INILPQLFLQNSS 262
           +        L  L  L +S        + I   ++SL+ L +  NS              
Sbjct: 116 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 175

Query: 263 KLKVLNISKNCLKMLPS 279
            L  L++S+  L+ L  
Sbjct: 176 NLTFLDLSQCQLEQLSP 192

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 50/261 (19%), Positives = 82/261 (31%), Gaps = 63/261 (24%)

Query: 1   LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLP-VFLRHPMSPLNNVIEHGI 56
           L +  +  N L+       S      LK+L  + N +  +   FL               
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE------------ 101

Query: 57  AEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSE 113
                                     +L  ++ + + LK      +  +  NL  LD+S 
Sbjct: 102 --------------------------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISH 135

Query: 114 NSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLD 173
                   G  N L S       L+ L + G+S        +    L        L  LD
Sbjct: 136 THTRVAFNGIFNGLSS-------LEVLKMAGNSFQENFL-PDIFTEL------RNLTFLD 181

Query: 174 ISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP- 231
           +S  +LE L     ++   L+ +  SHN    L +  + + L  L  L  S N + +   
Sbjct: 182 LSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKK 240

Query: 232 -SLIRQIASLKYLFLQSNSIN 251
             L    +SL +L L  N   
Sbjct: 241 QELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 19/77 (24%), Positives = 35/77 (45%), Gaps = 3/77 (3%)

Query: 219 TLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            ++ +   LTS+P+ I   +S   L L+SN +  LP       ++L  L++S N L    
Sbjct: 11  EIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 279 SLQKGFY-LLNISQLRL 294
              +  +   ++  L L
Sbjct: 69  CCSQSDFGTTSLKYLDL 85

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  112 bits (282), Expect = 1e-26
 Identities = 48/199 (24%), Positives = 87/199 (43%), Gaps = 16/199 (8%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
           +        N+    +        + L ++  ++ SL      ++  ++ ++N L +L  
Sbjct: 38  KQALPGENRNEAVSLLKECLINQFSELQLNRLNLSSLPDNLPPQITVLEITQNALISLPE 97

Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRI 202
             +SL  + A +N+L +L     PA L+HLD+  N+L  LP+       LE I A +N++
Sbjct: 98  LPASLEYLDACDNRLSTL--PELPASLKHLDVDNNQLTMLPELP---ALLEYINADNNQL 152

Query: 203 TQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSS 262
           T LP          L  L +  N+LT LP L     SL+ L + +N +  LP + ++N  
Sbjct: 153 TMLPEL-----PTSLEVLSVRNNQLTFLPELPE---SLEALDVSTNLLESLPAVPVRNHH 204

Query: 263 ---KLKVLNISKNCLKMLP 278
                      +N +  +P
Sbjct: 205 SEETEIFFRCRENRITHIP 223

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  108 bits (272), Expect = 3e-25
 Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 14/214 (6%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLKTLV 141
           +T + +  N L    +     +L  LD  +N + +L     +L  L       NQL  L 
Sbjct: 82  ITVLEITQNAL--ISLPELPASLEYLDACDNRLSTLPELPASLKHL---DVDNNQLTMLP 136

Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNR 201
              + L  + A NN+L  L     P  L+ L +  N+L  LP+  ++   LE +  S N 
Sbjct: 137 ELPALLEYINADNNQLTML--PELPTSLEVLSVRNNQLTFLPELPES---LEALDVSTNL 191

Query: 202 ITQLPSQFF-CRELGKLHT-LQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
           +  LP+         +     +   NR+T +P  I  +     + L+ N ++   +  L 
Sbjct: 192 LESLPAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 260 NSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
             +     +  +    M    Q   +      + 
Sbjct: 252 QQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVT 285

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  101 bits (253), Expect = 8e-23
 Identities = 58/277 (20%), Positives = 87/277 (31%), Gaps = 55/277 (19%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
             E +++R +L+  P N    P++  L   QN +  LP                      
Sbjct: 61  FSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPELP------------------- 99

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  L  ++   N+L  + +     +L  LDV  N +  L 
Sbjct: 100 ---------------------ASLEYLDACDNRL--STLPELPASLKHLDVDNNQLTMLP 136

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
                 LE I    NQL  L    +SL  +   NN+L  L     P  L+ LD+S N LE
Sbjct: 137 -ELPALLEYINADNNQLTMLPELPTSLEVLSVRNNQLTFL--PELPESLEALDVSTNLLE 193

Query: 181 SLPDWIDTCPELET----IFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236
           SLP         E          NRIT +P       L    T+ L  N L+S       
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITHIPENIL--SLDPTCTIILEDNPLSSRI--RES 249

Query: 237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC 273
           ++                    Q ++  + L  +   
Sbjct: 250 LSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADAVTA 286

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 95.4 bits (237), Expect = 7e-21
 Identities = 46/193 (23%), Positives = 80/193 (41%), Gaps = 30/193 (15%)

Query: 104 GNLTTL--DVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLI 161
            N  +L  +   N+I        +  +       + +   L G +        N+  SL+
Sbjct: 8   NNNFSLSQNSFYNTISGTYADYFSAWD-------KWEKQALPGEN-------RNEAVSLL 53

Query: 162 VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221
                 +   L ++   L SLPD +   P++  +  + N +  LP          L  L 
Sbjct: 54  KECLINQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALISLPE-----LPASLEYLD 106

Query: 222 LSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
              NRL++LP L    ASLK+L + +N + +LP+L     + L+ +N   N L MLP L 
Sbjct: 107 ACDNRLSTLPELP---ASLKHLDVDNNQLTMLPELP----ALLEYINADNNQLTMLPELP 159

Query: 282 KGFYLLNISQLRL 294
               +L++   +L
Sbjct: 160 TSLEVLSVRNNQL 172

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 64.6 bits (157), Expect = 4e-11
 Identities = 29/148 (19%), Positives = 53/148 (35%), Gaps = 17/148 (11%)

Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTC-PELETIFASHNRITQLP 206
           +S++   N   SL            +  YN +        +   + E          +  
Sbjct: 1   MSIMLPINNNFSLS----------QNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAV 50

Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKV 266
           S      + +   LQL+   L+SLP  +     +  L +  N++  LP+L     + L+ 
Sbjct: 51  SLLKECLINQFSELQLNRLNLSSLPDNLPP--QITVLEITQNALISLPELP----ASLEY 104

Query: 267 LNISKNCLKMLPSLQKGFYLLNISQLRL 294
           L+   N L  LP L      L++   +L
Sbjct: 105 LDACDNRLSTLPELPASLKHLDVDNNQL 132

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 43.8 bits (103), Expect = 1e-04
 Identities = 35/286 (12%), Positives = 82/286 (28%), Gaps = 60/286 (20%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+    D N LT  P   +    L+ LS   N+++ LP                      
Sbjct: 142 LEYINADNNQLTMLP---ELPTSLEVLSVRNNQLTFLPELPES----------------- 181

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG-TIILGNYGNLTT----LDVSENS 115
                                  L ++++ +N L+    +     +           EN 
Sbjct: 182 -----------------------LEALDVSTNLLESLPAVPVRNHHSEETEIFFRCRENR 218

Query: 116 IESL--DLGALNRLESIKCSRNQLKTLV-LNGSSLISVIAGNNKLQSLIVSPRPARLQHL 172
           I  +  ++ +L+   +I    N L + +  + S   +    +       +S       H 
Sbjct: 219 ITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR 278

Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQLPS----QFFCRELGKLHTLQLSFNRLT 228
            ++       P+      +   +    +             F   L    + + +     
Sbjct: 279 PLADAVTAWFPE-----NKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSGFRE 333

Query: 229 SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
            + + + ++++   L  QS ++        ++   L   N+ K  L
Sbjct: 334 QVAAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  111 bits (280), Expect = 2e-26
 Identities = 61/296 (20%), Positives = 116/296 (39%), Gaps = 51/296 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           +   + DR  +    G +     L  ++ + N+++ +      P+  L            
Sbjct: 48  VTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDIT-----PLKNLTK---------- 91

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  L  + + +NQ+     L N  NLT L +  N I  +D
Sbjct: 92  -----------------------LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 128

Query: 121 -LGALNRLESIKCSRNQLKTL-VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
            L  L  L  ++ S N +  +  L+G + +  ++  N++  L        L+ LDIS N+
Sbjct: 129 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 188

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           +  +   +     LE++ A++N+I+ +        L  L  L L+ N+L  + +L   + 
Sbjct: 189 VSDISV-LAKLTNLESLIATNNQISDITP---LGILTNLDELSLNGNQLKDIGTL-ASLT 243

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
           +L  L L +N I+ L    L   +KL  L +  N +  +  L     L  ++ L L
Sbjct: 244 NLTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNISPLAG---LTALTNLEL 294

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  107 bits (270), Expect = 3e-25
 Identities = 47/214 (21%), Positives = 95/214 (44%), Gaps = 13/214 (6%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL-- 140
           L  +++ SN++    +L    NL +L  + N I  +  LG L  L+ +  + NQLK +  
Sbjct: 179 LERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT 238

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
           + + ++L  +   NN++ +L       +L  L +  N++ ++   +     L  +  + N
Sbjct: 239 LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNEN 297

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
           ++  +        L  L  L L FN ++ +  +   +  L+ LF  +N ++ +    L N
Sbjct: 298 QLEDISP---ISNLKNLTYLTLYFNNISDISPV-SSLTKLQRLFFYNNKVSDVS--SLAN 351

Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
            + +  L+   N +  L  L     L  I+QL L
Sbjct: 352 LTNINWLSAGHNQISDLTPLAN---LTRITQLGL 382

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (268), Expect = 7e-25
 Identities = 44/213 (20%), Positives = 88/213 (41%), Gaps = 12/213 (5%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL--V 141
           L  + L SN +     L    +L  L       +   L  L  LE +  S N++  +  +
Sbjct: 136 LNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL 195

Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNR 201
              ++L S+IA NN++  +        L  L ++ N+L+ +   + +   L  +  ++N+
Sbjct: 196 AKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQ 254

Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
           I+ L        L KL  L+L  N+++++  L   + +L  L L  N +  +    + N 
Sbjct: 255 ISNLAP---LSGLTKLTELKLGANQISNISPL-AGLTALTNLELNENQLEDIS--PISNL 308

Query: 262 SKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
             L  L +  N +  +  +     L  + +L  
Sbjct: 309 KNLTYLTLYFNNISDISPVSS---LTKLQRLFF 338

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (266), Expect = 1e-24
 Identities = 57/296 (19%), Positives = 114/296 (38%), Gaps = 51/296 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L +     N LT+      +  +L  +    N+I+ +      P++ L N          
Sbjct: 70  LTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIADIT-----PLANLTN---------- 113

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  LT + L +NQ+     L N  NL  L++S N+I  + 
Sbjct: 114 -----------------------LTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDIS 150

Query: 121 -LGALNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
            L  L  L+ +           L   ++L  +   +NK+  + V  +   L+ L  + N+
Sbjct: 151 ALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQ 210

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           +  +   +     L+ +  + N++  + +      L  L  L L+ N++++L  L   + 
Sbjct: 211 ISDITP-LGILTNLDELSLNGNQLKDIGTL---ASLTNLTDLDLANNQISNLAPL-SGLT 265

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
            L  L L +N I+ +    L   + L  L +++N L+ +  +     L N++ L L
Sbjct: 266 KLTELKLGANQISNIS--PLAGLTALTNLELNENQLEDISPISN---LKNLTYLTL 316

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (266), Expect = 1e-24
 Identities = 49/233 (21%), Positives = 95/233 (40%), Gaps = 28/233 (12%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
           E     L    +  T+   +   +TTL      I+S+D +  LN L  I  S NQL  + 
Sbjct: 25  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 84

Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
            + N + L+ ++  NN++  +        L  L +  N++  +   +     L  +  S 
Sbjct: 85  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP-LKNLTNLNRLELSS 143

Query: 200 NRITQLPSQFFCRELGKLH------------------TLQLSFNRLTSLPSLIRQIASLK 241
           N I+ + +      L +L                    L +S N+++ +  L  ++ +L+
Sbjct: 144 NTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL-AKLTNLE 202

Query: 242 YLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
            L   +N I+ +    L   + L  L+++ N LK + +L     L N++ L L
Sbjct: 203 SLIATNNQISDIT--PLGILTNLDELSLNGNQLKDIGTLAS---LTNLTDLDL 250

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  105 bits (264), Expect = 2e-24
 Identities = 61/297 (20%), Positives = 113/297 (38%), Gaps = 53/297 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L    +  N +T+      +   L  L  + N IS +       +S L +          
Sbjct: 114 LTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDIS-----ALSGLTS---------- 157

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  L  ++   NQ+     L N   L  LD+S N +  + 
Sbjct: 158 -----------------------LQQLSF-GNQVTDLKPLANLTTLERLDISSNKVSDIS 193

Query: 121 -LGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
            L  L  LES+  + NQ+  +  +   ++L  +    N+L+ +        L  LD++ N
Sbjct: 194 VLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN 253

Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
           ++ +L   +    +L  +    N+I+ +        L  L  L+L+ N+L  +   I  +
Sbjct: 254 QISNLAP-LSGLTKLTELKLGANQISNISPL---AGLTALTNLELNENQLEDISP-ISNL 308

Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
            +L YL L  N+I+ +    + + +KL+ L    N +  + SL     L NI+ L  
Sbjct: 309 KNLTYLTLYFNNISDIS--PVSSLTKLQRLFFYNNKVSDVSSLAN---LTNINWLSA 360

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  102 bits (257), Expect = 1e-23
 Identities = 51/246 (20%), Positives = 98/246 (39%), Gaps = 10/246 (4%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL-- 140
           L S+   +NQ+     LG   NL  L ++ N ++ +  L +L  L  +  + NQ+  L  
Sbjct: 201 LESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAP 260

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
           +   + L  +  G N++ ++        L +L+++ N+LE +   I     L  +    N
Sbjct: 261 LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-ISNLKNLTYLTLYFN 319

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
            I+ +        L KL  L    N+++ + SL   + ++ +L    N I+ L  L   N
Sbjct: 320 NISDISPV---SSLTKLQRLFFYNNKVSDVSSL-ANLTNINWLSAGHNQISDLTPL--AN 373

Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLV 320
            +++  L ++       P   K    +  +   + G   + A I    S    DI   L 
Sbjct: 374 LTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLP 433

Query: 321 QSIPRI 326
                +
Sbjct: 434 SYTNEV 439

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 95.4 bits (238), Expect = 4e-21
 Identities = 40/217 (18%), Positives = 90/217 (41%), Gaps = 15/217 (6%)

Query: 82  GELTSVN-LRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKT 139
           G L S    +   +                + + ++        L+++ +++  R  +K+
Sbjct: 1   GPLGSATITQDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKS 60

Query: 140 L--VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFA 197
           +  V   ++L  +   NN+L  +       +L  + ++ N++  +   +     L  +  
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP-LANLTNLTGLTL 119

Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLF 257
            +N+IT +      + L  L+ L+LS N ++ + +L   + SL+ L   +   ++ P   
Sbjct: 120 FNNQITDIDPL---KNLTNLNRLELSSNTISDISAL-SGLTSLQQLSFGNQVTDLKP--- 172

Query: 258 LQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
           L N + L+ L+IS N +  +  L K   L N+  L  
Sbjct: 173 LANLTTLERLDISSNKVSDISVLAK---LTNLESLIA 206

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 83.9 bits (208), Expect = 2e-17
 Identities = 37/273 (13%), Positives = 82/273 (30%), Gaps = 63/273 (23%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L +  +  N ++          +L  L    N+IS++      P++ L            
Sbjct: 245 LTDLDLANNQISNLA-PLSGLTKLTELKLGANQISNIS-----PLAGLTA---------- 288

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  LT++ L  NQL+    + N  NLT L +  N+I  + 
Sbjct: 289 -----------------------LTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS 325

Query: 121 -LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
            + +L +L+ +    N++          +S +A    +              L   +N++
Sbjct: 326 PVSSLTKLQRLFFYNNKVSD--------VSSLANLTNINW------------LSAGHNQI 365

Query: 180 ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS 239
             L   +     +  +  +    T  P  +       +     +       P+ I    S
Sbjct: 366 SDLTP-LANLTRITQLGLNDQAWTNAPVNYK--ANVSIPNTVKNVTGALIAPATISDGGS 422

Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
                +  N  +   ++    S  + +   +  
Sbjct: 423 YTEPDITWNLPSYTNEVSYTFSQPVTIGKGTTT 455

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  112 bits (281), Expect = 3e-26
 Identities = 48/282 (17%), Positives = 97/282 (34%), Gaps = 40/282 (14%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL----DLGALNRLESIKCSRNQL 137
           L S+NL  NQ+        G    +  L  + N ++ +    D  +++ + +I  S N++
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEI 414

Query: 138 KTL-----------VLNGSSLISVIAGNNKLQSLI--VSPRPARLQHLDISYNELESLPD 184
            ++              G ++ S+   NN++      +    + L  +++  N L  +P 
Sbjct: 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPK 474

Query: 185 W--------IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236
                          L +I    N++T+L   F    L  L  + LS+N  +  P+    
Sbjct: 475 NSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLN 534

Query: 237 IASLKYLFLQSNSINILPQLF------LQNSSKLKVLNISKNCLKMLP-SLQKGFYLLNI 289
            ++LK   +++       +        +     L  L I  N ++ +   +     +L+I
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPNISVLDI 594

Query: 290 S-----QLRLPGFCNSDALIGIFDSGDN-GDIASTLVQSIPR 325
                  + L   C            D   DI       I R
Sbjct: 595 KDNPNISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDIKR 636

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  106 bits (267), Expect = 2e-24
 Identities = 57/319 (17%), Positives = 105/319 (32%), Gaps = 75/319 (23%)

Query: 1   LQEFRVDRNDLTEFPGNQDSF-PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           L    +  N +TE P N   F  +++ LS A N++ ++P         ++          
Sbjct: 355 LASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIF--DAKSVSV--------- 403

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII---------LGNYGNLTTLD 110
                                   +++++   N++                   N+++++
Sbjct: 404 ------------------------MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSIN 439

Query: 111 VSENSIESL---DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA 167
           +S N I           + L SI    N L  +  N     +    N             
Sbjct: 440 LSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTY----------- 488

Query: 168 RLQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLPSQFF----CRELGKLHTLQ 221
            L  +D+ +N+L  L D     T P L  I  S+N  ++ P+Q       +  G  +   
Sbjct: 489 LLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSSTLKGFGIRNQRD 548

Query: 222 LSFNRLT-SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP-- 278
              NR     P  I    SL  L + SN I  + +    N   + VL+I  N    +   
Sbjct: 549 AQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKITPN---ISVLDIKDNPNISIDLS 605

Query: 279 ----SLQKGFYLLNISQLR 293
                ++ G Y+L   + +
Sbjct: 606 YVCPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 99.3 bits (248), Expect = 4e-22
 Identities = 38/225 (16%), Positives = 83/225 (36%), Gaps = 30/225 (13%)

Query: 84  LTSVNLRSNQLKGTII--LGNYGNLTTLDVSENS-IESL--DLGALNRLESIKCSRNQLK 138
             + N    Q   T      N  +LT ++V     +  L   L AL  ++ I  + N+  
Sbjct: 227 WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 139 TLVLNGSSL--ISVIAGNNKLQSLIVS-------PRPA------RLQHLDISYNELESLP 183
           +          ++      K+Q + +        P         +L  L+  YN+LE   
Sbjct: 287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKL 346

Query: 184 DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL--IRQIASLK 241
               +  +L ++  ++N+IT++P+ F      ++  L  + N+L  +P++   + ++ + 
Sbjct: 347 PAFGSEIKLASLNLAYNQITEIPANFC-GFTEQVENLSFAHNKLKYIPNIFDAKSVSVMS 405

Query: 242 YLFLQSNSINILPQLFLQ-------NSSKLKVLNISKNCLKMLPS 279
            +    N I  +                 +  +N+S N +   P 
Sbjct: 406 AIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 97.4 bits (243), Expect = 2e-21
 Identities = 39/234 (16%), Positives = 84/234 (35%), Gaps = 30/234 (12%)

Query: 83  ELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           + T +   SN +  T +   +     L    +  +   + ++      E+ +    Q KT
Sbjct: 184 KDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-YAQQYKT 240

Query: 140 LVLNGSSLIS----VIAGNNKLQSLIVSPRPA------RLQHLDISYNELESLPDWID-- 187
             L   +L       +     L  L     P        +Q ++++ N   S     D  
Sbjct: 241 EDLKWDNLKDLTDVEVYNCPNLTKL-----PTFLKALPEMQLINVACNRGISGEQLKDDW 295

Query: 188 -------TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
                     +++ I+  +N +   P +   +++ KL  L+  +N+L            L
Sbjct: 296 QALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL 355

Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
             L L  N I  +P  F   + +++ L+ + N LK +P++     +  +S +  
Sbjct: 356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDF 409

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 87.0 bits (216), Expect = 3e-18
 Identities = 31/241 (12%), Positives = 72/241 (29%), Gaps = 44/241 (18%)

Query: 82  GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD-------LGALNRLESIKC 132
           G +T ++L      G +   +G    L  L +  +  +  +       + A    E  + 
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 133 SRNQLKTLVLNGSSLISV-------IAGNNKLQSLIVSPR-PARLQHLDISYNELESLPD 184
            R   +   ++              I  + + +S+  S R   +   +    N +  +  
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSK 200

Query: 185 WIDTCPELETIFASHNRITQLPSQFFCR---------------ELGKLHTLQ----LSFN 225
            +    +L   +  ++                           +   L  L      +  
Sbjct: 201 AVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 226 RLTSLPSLIRQIASLKYLFLQSNSINILPQLF--------LQNSSKLKVLNISKNCLKML 277
            LT LP+ ++ +  ++ + +  N      QL              K++++ I  N LK  
Sbjct: 261 NLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTF 320

Query: 278 P 278
           P
Sbjct: 321 P 321

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 72.4 bits (178), Expect = 2e-13
 Identities = 32/227 (14%), Positives = 63/227 (27%), Gaps = 40/227 (17%)

Query: 98  IILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLVL--------NGSS 146
           + L + G +T L +            +G L  LE +    +  K               S
Sbjct: 75  VSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMS 134

Query: 147 LISVIAGNNKLQSLIVSPRPA----RLQHLDISYNELE-SLPDWIDTCPELETIFASHNR 201
                      Q   V   P      L    I+ +  + S+        +   I    N 
Sbjct: 135 DEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNN 194

Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLT--------------------SLPSLIRQIASLK 241
           IT +        L KL    +  +                       +       +  L 
Sbjct: 195 ITFVSKAVM--RLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLT 252

Query: 242 YLFLQSNS-INILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLL 287
            + + +   +  LP  FL+   +++++N++ N       L+  +  L
Sbjct: 253 DVEVYNCPNLTKLPT-FLKALPEMQLINVACNRGISGEQLKDDWQAL 298

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 48.9 bits (117), Expect = 3e-06
 Identities = 30/243 (12%), Positives = 53/243 (21%), Gaps = 84/243 (34%)

Query: 1   LQEFRVDRNDLTEFPGNQDSF--------PRLKFLSAAQNRISHLPVFLRHPMSPLNNVI 52
           L    +  N LTE P N              L  +    N+++ L    R   + L    
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFR--ATTLPY-- 514

Query: 53  EHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII---LGNYGNLTTL 109
                                          L  ++L  N            N   L   
Sbjct: 515 -------------------------------LVGIDLSYNSFSK--FPTQPLNSSTLKGF 541

Query: 110 DVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARL 169
            +        D              N+              I       S         L
Sbjct: 542 GIRNQ----RDA-----------QGNRTLR------EWPEGIT---LCPS---------L 568

Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
             L I  N++  + + I   P +  +    N    +   + C    +     L +++   
Sbjct: 569 TQLQIGSNDIRKVNEKI--TPNISVLDIKDNPNISIDLSYVC-PYIEAGMYMLFYDKTQD 625

Query: 230 LPS 232
           +  
Sbjct: 626 IRG 628

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 41.6 bits (98), Expect = 6e-04
 Identities = 12/94 (12%), Positives = 29/94 (30%), Gaps = 14/94 (14%)

Query: 211 CRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSINI---------LPQLFLQN 260
               G++  L L     +  +P  I Q+  L+ L L S+   +         +       
Sbjct: 77  LNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDE 136

Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
             +   ++  K  +   P         ++ +  +
Sbjct: 137 QKQKMRMHYQKTFVDYDPRED----FSDLIKDCI 166

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  110 bits (278), Expect = 6e-26
 Identities = 41/204 (20%), Positives = 75/204 (36%), Gaps = 13/204 (6%)

Query: 82  GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA-----LNRLESIKCSRNQ 136
             L  +   SN+        +  +L  LD+S N +      +        L+ +  S N 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 137 LKTL---VLNGSSLISVIAGNNKLQSLI---VSPRPARLQHLDISYNELESLPDWI-DTC 189
           + T+    L    L  +   ++ L+ +    V      L +LDIS+       + I +  
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSN 248
             LE +  + N   +        EL  L  L LS  +L  L       ++SL+ L + SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 249 SINILPQLFLQNSSKLKVLNISKN 272
            +  +P       + L+ + +  N
Sbjct: 505 QLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  105 bits (263), Expect = 5e-24
 Identities = 34/203 (16%), Positives = 70/203 (34%), Gaps = 8/203 (3%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV-- 141
           ++S +L S  ++             L++            L  L+ +  + N+       
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 142 LNGSSLISVIAGNNKLQSLIVSP----RPARLQHLDISYNELESLPDWIDTCPELETIFA 197
           ++  SL  +    N L               L++LD+S+N + ++        +LE +  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSI-NILPQ 255
            H+ + Q+        L  L  L +S          +   ++SL+ L +  NS       
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 256 LFLQNSSKLKVLNISKNCLKMLP 278
                   L  L++S+  L+ L 
Sbjct: 464 DIFTELRNLTFLDLSQCQLEQLS 486

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 97.5 bits (243), Expect = 1e-21
 Identities = 53/324 (16%), Positives = 108/324 (33%), Gaps = 56/324 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQ--DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
           L+E  V  N +  F   +   +   L+ L  + N+I  +       +  +  +       
Sbjct: 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL- 184

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDV------- 111
                    + G   E R       L  + LR+N     ++      L  L+V       
Sbjct: 185 -SLNPMNFIQPGAFKEIR-------LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 112 --SENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAG----------NNKLQS 159
             +E ++E  D  AL  L ++     +L  L      +I +             +  ++ 
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER 296

Query: 160 L---------------------IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFAS 198
           +                       + +   L+ L  + N+  +    +D  P LE +  S
Sbjct: 297 VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLS 355

Query: 199 HNRITQ--LPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL 256
            N ++     SQ        L  L LSFN + ++ S    +  L++L  Q +++  + + 
Sbjct: 356 RNGLSFKGCCSQSDFG-TTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 257 -FLQNSSKLKVLNISKNCLKMLPS 279
               +   L  L+IS    ++  +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFN 438

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.2 bits (237), Expect = 8e-21
 Identities = 52/236 (22%), Positives = 107/236 (45%), Gaps = 26/236 (11%)

Query: 84  LTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLK 138
             +++L  N L+   +    ++  L  LD+S   I++++ GA   L+ L ++  + N ++
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89

Query: 139 TL---VLNG-SSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESL--PDWIDTCP 190
           +L     +G SSL  ++A    L SL   P      L+ L++++N ++S   P++     
Sbjct: 90  SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 191 ELETIFASHNRITQLPSQFFCRELGKLH----TLQLSFNRLTSLPSLIRQIASLKYLFLQ 246
            LE +  S N+I  +      R L ++     +L LS N +  +     +   L  L L+
Sbjct: 150 NLEHLDLSSNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLR 208

Query: 247 SNSINI-LPQLFLQNSSKLKVLNISKNCLKMLPSLQ-------KGFYLLNISQLRL 294
           +N  ++ + +  +Q  + L+V  +     +   +L+       +G   L I + RL
Sbjct: 209 NNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 92.5 bits (230), Expect = 6e-20
 Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 26/217 (11%)

Query: 85  TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
            +           I      +   LD+S N +  L   +            +L+ L L+ 
Sbjct: 10  ITYQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-------ELQVLDLSR 61

Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRIT 203
             + ++  G    QSL      + L  L ++ N ++SL          L+ + A    + 
Sbjct: 62  CEIQTIEDGA--YQSL------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSL--PSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
            L +      L  L  L ++ N + S   P     + +L++L L SN I  +    L+  
Sbjct: 114 SLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 262 SKLKV----LNISKNCLKMLPSLQKGFYLLNISQLRL 294
            ++ +    L++S N +  +      F  + + +L L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLHKLTL 207

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 79.0 bits (195), Expect = 1e-15
 Identities = 40/324 (12%), Positives = 96/324 (29%), Gaps = 67/324 (20%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
            +   +  N L         SFP L+ L  ++  I  +    +                 
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS------------- 76

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENS 115
                                     L+++ L  N ++           +L  L   E +
Sbjct: 77  -------------------------HLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111

Query: 116 IESLDLGALNRLESIKC---SRNQLKTLVLNG-----SSLISVIAGNNKLQSLI------ 161
           + SL+   +  L+++K    + N +++  L       ++L  +   +NK+QS+       
Sbjct: 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV 171

Query: 162 VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221
           +   P     LD+S N +  +         L  +   +N  +    +   + L  L   +
Sbjct: 172 LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHR 231

Query: 222 LSFNRLTSLPSLIR----QIASLKYLFLQSNSINILPQLFLQNSS------KLKVLNISK 271
           L      +  +L +     +  L  L ++   +  L                +   ++  
Sbjct: 232 LVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVS 291

Query: 272 NCLKMLPSLQKGFYLLNISQLRLP 295
             ++ +      F   ++  +   
Sbjct: 292 VTIERVKDFSYNFGWQHLELVNCK 315

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 77.1 bits (190), Expect = 4e-15
 Identities = 51/330 (15%), Positives = 90/330 (27%), Gaps = 70/330 (21%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           L    +  N +             L+ L A +  ++ L      P+  L           
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE---NFPIGHLKT--------- 125

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSI 116
                                   L  +N+  N ++   +     N  NL  LD+S N I
Sbjct: 126 ------------------------LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI 161

Query: 117 ESLDLGALNRLESIK-------CSRNQLKTL---VLNGSSLISVIAGNNKLQSLIVSPRP 166
           +S+    L  L  +         S N +  +         L  +   NN     ++    
Sbjct: 162 QSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCI 221

Query: 167 ARLQHLDISYNELESLPDW-------IDTCPELETIFASHNRITQLPSQFFC-----REL 214
             L  L++    L    +              L  +     R+  L             L
Sbjct: 222 QGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL 281

Query: 215 GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
             + +  L    +  +          ++L L +      P L L++   LK L  + N  
Sbjct: 282 TNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQFPTLKLKS---LKRLTFTSNKG 337

Query: 275 KMLPSLQKGFYL--LNIS--QLRLPGFCNS 300
               S      L  L++S   L   G C+ 
Sbjct: 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQ 367

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 76.7 bits (189), Expect = 5e-15
 Identities = 49/321 (15%), Positives = 94/321 (29%), Gaps = 69/321 (21%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           LQ+      +L             LK L+ A N I      L    S L N         
Sbjct: 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK--LPEYFSNLTN--------- 150

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLT----TLDVSE 113
                                   L  ++L SN+++      L     +     +LD+S 
Sbjct: 151 ------------------------LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 114 NSIESLDLGALN--RLESIKCSRNQLKTLVLNG-----------SSLISVIAGNNKLQSL 160
           N +  +  GA    RL  +    N     V+               ++        L+  
Sbjct: 187 NPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKF 246

Query: 161 IVSP----RPARLQHLDISYNEL--ESLPDWIDTCPELETIFASHNRITQLPSQFFCREL 214
             S         ++   ++Y +   + + D  +    + +       I ++    +    
Sbjct: 247 DKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGW 306

Query: 215 GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
             L  +   F +  +L     ++ SLK L   SN           +   L+ L++S+N L
Sbjct: 307 QHLELVNCKFGQFPTL-----KLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGL 359

Query: 275 KMLPSLQKGFY-LLNISQLRL 294
                  +  +   ++  L L
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDL 380

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 8e-10
 Identities = 31/239 (12%), Positives = 61/239 (25%), Gaps = 79/239 (33%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+   +  N +     N     +L+ L    + +  +        S   ++         
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-----EFSVFLSL--------- 420

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSI-E 117
                                  L  +++     +     I     +L  L ++ NS  E
Sbjct: 421 ---------------------RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
           +        L +                                       L  LD+S  
Sbjct: 460 NFLPDIFTELRN---------------------------------------LTFLDLSQC 480

Query: 178 ELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR 235
           +LE L     ++   L+ +  + N++  +P   F R L  L  + L  N        I 
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDR-LTSLQKIWLHTNPWDCSCPRID 538

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 3e-05
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
           C E+    T Q        +P  +    S K L L  N +  L      +  +L+VL++S
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 271 KNCLKMLPS 279
           +  ++ +  
Sbjct: 61  RCEIQTIED 69

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  111 bits (279), Expect = 6e-26
 Identities = 49/293 (16%), Positives = 93/293 (31%), Gaps = 31/293 (10%)

Query: 1   LQEFRVDRNDLTE-FPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           + EFR+   +              +  +S A   I +L    +H      ++I   + + 
Sbjct: 263 IDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQF 322

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
              D                    L S+ L  N+   +       +L+ LD+S N++   
Sbjct: 323 PTLDLPF-----------------LKSLTLTMNKGSISFKKVALPSLSYLDLSRNALSFS 365

Query: 120 DLGA-----LNRLESIKCSRNQLKTL---VLNGSSLISVIAGNNKLQSLIVS---PRPAR 168
              +      N L  +  S N    +    +    L  +   ++ L+ +          +
Sbjct: 366 GCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEK 425

Query: 169 LQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL 227
           L +LDISY   +   D I      L T+  + N                L  L LS  +L
Sbjct: 426 LLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQL 485

Query: 228 TSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
             +   +   +  L+ L +  N++  L          L  L+ S N ++    
Sbjct: 486 EQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKG 538

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  105 bits (264), Expect = 5e-24
 Identities = 54/313 (17%), Positives = 91/313 (29%), Gaps = 57/313 (18%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
            Q   + R  L +FP      P LK L+   N+ S     +  P                
Sbjct: 309 WQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVALP---------------- 350

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENSI 116
                                  L+ ++L  N L      +       +L  LD+S N  
Sbjct: 351 ----------------------SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388

Query: 117 ESLD--LGALNRLESIKCSRNQLKTLVLNG-----SSLISVIAGNNKLQSLIVS--PRPA 167
             +      L  L+ +    + LK +           L+ +       +           
Sbjct: 389 IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT 448

Query: 168 RLQHLDISYNELES--LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
            L  L ++ N  +   L +       L  +  S  ++ Q+    F   L +L  L +S N
Sbjct: 449 SLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVF-DTLHRLQLLNMSHN 507

Query: 226 RLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGF 284
            L  L  S   Q+ SL  L    N I     +       L   N++ N +  +   QK  
Sbjct: 508 NLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQKFL 567

Query: 285 YLLNISQLRLPGF 297
             +   +  L   
Sbjct: 568 QWVKEQKQFLVNV 580

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  104 bits (262), Expect = 7e-24
 Identities = 51/301 (16%), Positives = 89/301 (29%), Gaps = 27/301 (8%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
                +  N +           +L  L+   N  S     ++  +  L  +  H +    
Sbjct: 183 NLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNS--SNIMKTCLQNLAGLHVHRLILGE 240

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSI 116
            +D    E   I E    E   ++T    R                  N++ + ++  SI
Sbjct: 241 FKDERNLE---IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSI 297

Query: 117 ESLDLGA-LNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDI 174
           + L+      + +S+   R QLK         L S+    NK            L +LD+
Sbjct: 298 KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNKGSISFKKVALPSLSYLDL 357

Query: 175 SYNELESLPD---WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
           S N L               L  +  S N    + + F    L +L  L    + L  + 
Sbjct: 358 SRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMG--LEELQHLDFQHSTLKRVT 415

Query: 232 --SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK---------MLPSL 280
             S    +  L YL +   +  I         + L  L ++ N  K            +L
Sbjct: 416 EFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNL 475

Query: 281 Q 281
            
Sbjct: 476 T 476

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 98.2 bits (245), Expect = 1e-21
 Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 26/230 (11%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
             +++L  N LK        N+  L  LD+S   IE+++  A + L         L  L+
Sbjct: 34  TKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHH-------LSNLI 86

Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHN 200
           L G+ + S   G+     L        L++L     +L SL    I     L+ +  +HN
Sbjct: 87  LTGNPIQSFSPGS--FSGL------TSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-----LIRQIASLKYLFLQSNSINILPQ 255
            I       +   L  L  + LS+N + ++       L         L +  N I+ +  
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQD 198

Query: 256 LFLQNSSKLKVLNISKNCL--KMLPSLQKGFYLLNISQLRLPGFCNSDAL 303
              Q    L  L +  N     ++ +  +    L++ +L L  F +   L
Sbjct: 199 QAFQGIK-LHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL 247

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 97.0 bits (242), Expect = 2e-21
 Identities = 38/217 (17%), Positives = 82/217 (37%), Gaps = 26/217 (11%)

Query: 85  TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
            +      +L   +      +   +D+S N ++ L   + +         ++L+ L L+ 
Sbjct: 14  ITYQCMDQKLS-KVPDDIPSSTKNIDLSFNPLKILKSYSFSNF-------SELQWLDLSR 65

Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRIT 203
             + ++         L        L +L ++ N ++S  P        LE + A   ++ 
Sbjct: 66  CEIETIEDKA--WHGL------HHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTS--LPSLIRQIASLKYLFLQSNSINILP----QLF 257
            L S     +L  L  L ++ N + S  LP+    + +L ++ L  N I  +     Q  
Sbjct: 118 SLESFPIG-QLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 258 LQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
            +N      L++S N +  +    + F  + + +L L
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQD--QAFQGIKLHELTL 211

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 96.3 bits (240), Expect = 4e-21
 Identities = 40/241 (16%), Positives = 86/241 (35%), Gaps = 27/241 (11%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLK 138
           L+++ L  N ++           +L  L   E  + SL+   +G L  L+ +  + N + 
Sbjct: 82  LSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIH 141

Query: 139 TLVLNG-----SSLISVIAGNNKLQSLI------VSPRPARLQHLDISYNELESLPDWID 187
           +  L       ++L+ V    N +Q++       +   P     LD+S N ++ + D   
Sbjct: 142 SCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAF 201

Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS-------- 239
              +L  +    N  +    +   + L  LH  +L         +L     S        
Sbjct: 202 QGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDV 261

Query: 240 -LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYL--LNISQLRLPG 296
            +    L   +      +     + +  ++++   +K L  + K F    L+I + +L  
Sbjct: 262 TIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ 321

Query: 297 F 297
           F
Sbjct: 322 F 322

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 93.2 bits (232), Expect = 3e-20
 Identities = 53/323 (16%), Positives = 105/323 (32%), Gaps = 50/323 (15%)

Query: 1   LQEFRVDRNDLTEF--PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEH---- 54
           L++  V  N +     P    +   L  +  + N I  + V     +     V       
Sbjct: 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189

Query: 55  --GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDV- 111
              I   +++ F+                 +L  + LR N     I+     NL  L V 
Sbjct: 190 LNPIDFIQDQAFQG---------------IKLHELTLRGNFNSSNIMKTCLQNLAGLHVH 234

Query: 112 --------SENSIESLDLGALNRLESIK-----CSRNQLKTLVLNG----SSLISVIAGN 154
                    E ++E  +   +  L  +       +     +  +      +++ ++    
Sbjct: 235 RLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAG 294

Query: 155 NKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCREL 214
             ++ L   P+  + Q L I   +L+  P      P L+++  + N+ +    +     L
Sbjct: 295 VSIKYLEDVPKHFKWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVA---L 349

Query: 215 GKLHTLQLSFNRLTSLPSLIRQIA---SLKYLFLQSNSINILPQLFLQNSSKLKVLNISK 271
             L  L LS N L+             SL++L L  N   I+   F     +L+ L+   
Sbjct: 350 PSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANF-MGLEELQHLDFQH 408

Query: 272 NCLKMLPSLQKGFYLLNISQLRL 294
           + LK +        L  +  L +
Sbjct: 409 STLKRVTEFSAFLSLEKLLYLDI 431

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 89.3 bits (222), Expect = 7e-19
 Identities = 52/302 (17%), Positives = 101/302 (33%), Gaps = 68/302 (22%)

Query: 8   RNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQD 67
              L++ P   D     K +  + N +  L     +  S  +                  
Sbjct: 20  DQKLSKVP--DDIPSSTKNIDLSFNPLKILK---SYSFSNFSE----------------- 57

Query: 68  EDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALN 125
                           L  ++L   +++           +L+ L ++ N I+S   G+ +
Sbjct: 58  ----------------LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFS 101

Query: 126 RLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELES--LP 183
            L S       L+ LV   + L S+ +    +  L        L+ L++++N + S  LP
Sbjct: 102 GLTS-------LENLVAVETKLASLESFP--IGQL------ITLKKLNVAHNFIHSCKLP 146

Query: 184 DWIDTCPELETIFASHNRITQLPSQFFC---RELGKLHTLQLSFNRLTSLPSLIRQIASL 240
            +      L  +  S+N I  +                +L +S N +  +     Q   L
Sbjct: 147 AYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKL 206

Query: 241 KYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-------KGFYLLNISQL 292
             L L+ N  +  + +  LQN + L V  +     K   +L+       +G   + I + 
Sbjct: 207 HELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEF 266

Query: 293 RL 294
           RL
Sbjct: 267 RL 268

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 86.2 bits (214), Expect = 7e-18
 Identities = 50/318 (15%), Positives = 86/318 (27%), Gaps = 69/318 (21%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           L+        L             LK L+ A N I      L    S L N         
Sbjct: 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCK--LPAYFSNLTN--------- 154

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG------TIILGNYGNLTTLDVSE 113
                                   L  V+L  N ++         +  N     +LD+S 
Sbjct: 155 ------------------------LVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL 190

Query: 114 NSIESLDLGALN--RLESIKCSRNQLKTLVLNGSS-----------LISVIAGNNKLQSL 160
           N I+ +   A    +L  +    N   + ++               ++        L+  
Sbjct: 191 NPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIF 250

Query: 161 IVSP----RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELG 215
             S         +    ++Y    S           +  +  +   I  L          
Sbjct: 251 EPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF--- 307

Query: 216 KLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275
           K  +L +   +L   P+L   +  LK L L  N  +I  +        L  L++S+N L 
Sbjct: 308 KWQSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFK--KVALPSLSYLDLSRNALS 363

Query: 276 MLPSLQKGFYLLNISQLR 293
                   +  L  + LR
Sbjct: 364 FSGCCS--YSDLGTNSLR 379

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 77.4 bits (191), Expect = 4e-15
 Identities = 52/297 (17%), Positives = 93/297 (31%), Gaps = 81/297 (27%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+   +  N       N      L+ L    + +  +        S   ++         
Sbjct: 378 LRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVT-----EFSAFLSL--------- 423

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                 +L  +++     K     G +  LT+L        +L 
Sbjct: 424 ---------------------EKLLYLDISYTNTK-IDFDGIFLGLTSL-------NTLK 454

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
           +           + N  K   L+               +         L  LD+S  +LE
Sbjct: 455 M-----------AGNSFKDNTLSNV-----------FANTT------NLTFLDLSKCQLE 486

Query: 181 SLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIA 238
            +     DT   L+ +  SHN +  L S  +  +L  L TL  SFNR+ +    L     
Sbjct: 487 QISWGVFDTLHRLQLLNMSHNNLLFLDSSHY-NQLYSLSTLDCSFNRIETSKGILQHFPK 545

Query: 239 SLKYLFLQSNSINILPQL--FLQ--NSSKLKVLNISK-NCLKMLPSLQKGFYLLNIS 290
           SL +  L +NS+  + +   FLQ     K  ++N+ +  C    P       +L+ +
Sbjct: 546 SLAFFNLTNNSVACICEHQKFLQWVKEQKQFLVNVEQMTC--ATPVEMNTSLVLDFN 600

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 45.0 bits (107), Expect = 5e-05
 Identities = 18/69 (26%), Positives = 33/69 (47%), Gaps = 2/69 (2%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
           C E+    T Q    +L+ +P  I   +S K + L  N + IL      N S+L+ L++S
Sbjct: 7   CIEVVPNITYQCMDQKLSKVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLS 64

Query: 271 KNCLKMLPS 279
           +  ++ +  
Sbjct: 65  RCEIETIED 73

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  107 bits (270), Expect = 9e-26
 Identities = 44/215 (20%), Positives = 93/215 (43%), Gaps = 12/215 (5%)

Query: 84  LTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
           + S+NL +N     +  L N   L  L V+E+ ++ +  +  L  L S+  + NQ++ + 
Sbjct: 134 MYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDIS 193

Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
            + + +SL    A  N++  +       RL  L I  N++  L   +    +L  +    
Sbjct: 194 PLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGT 252

Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
           N+I+ + +    ++L KL  L +  N+++ +   +  ++ L  LFL +N +       + 
Sbjct: 253 NQISDINA---VKDLTKLKMLNVGSNQISDISV-LNNLSQLNSLFLNNNQLGNEDMEVIG 308

Query: 260 NSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
             + L  L +S+N +  +  L     L  +     
Sbjct: 309 GLTNLTTLFLSQNHITDIRPLAS---LSKMDSADF 340

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  104 bits (263), Expect = 7e-25
 Identities = 26/214 (12%), Positives = 79/214 (36%), Gaps = 12/214 (5%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTL-- 140
             ++      +       +        + + S+  +     L  +  +  +  ++ ++  
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVTQEELESITKLVVAGEKVASIQG 61

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
           +   ++L  +    N++  +       +L +L I  N++  +   +     L  ++ + +
Sbjct: 62  IEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNED 120

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
            I+ +        L K+++L L  N   S  S +  +  L YL +  + +  +    + N
Sbjct: 121 NISDISPL---ANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVT--PIAN 175

Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
            + L  L+++ N ++ +  L     L ++     
Sbjct: 176 LTDLYSLSLNYNQIEDISPLAS---LTSLHYFTA 206

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  101 bits (254), Expect = 1e-23
 Identities = 44/196 (22%), Positives = 90/196 (45%), Gaps = 10/196 (5%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL-V 141
           L  + +  +++K    + N  +L +L ++ N IE +  L +L  L       NQ+  +  
Sbjct: 157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP 216

Query: 142 LNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
           +   + L S+  GNNK+  L      ++L  L+I  N++  +   +    +L+ +    N
Sbjct: 217 VANMTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKMLNVGSN 275

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQ 259
           +I+ +        L +L++L L+ N+L +    +I  + +L  LFL  N I  +    L 
Sbjct: 276 QISDISV---LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR--PLA 330

Query: 260 NSSKLKVLNISKNCLK 275
           + SK+   + +   +K
Sbjct: 331 SLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 48.3 bits (116), Expect = 3e-06
 Identities = 37/185 (20%), Positives = 68/185 (36%), Gaps = 44/185 (23%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L  F    N +T+      +  RL  L    N+I+ L      P++ L+ +    I   +
Sbjct: 201 LHYFTAYVNQITDIT-PVANMTRLNSLKIGNNKITDLS-----PLANLSQLTWLEIGTNQ 254

Query: 61  EEDFEQDEDGIIVERREPEVKG--ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
             D                VK   +L  +N+ SNQ+    +L N   L +L ++ N + +
Sbjct: 255 ISDI-------------NAVKDLTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGN 301

Query: 119 LD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
            D   +G L  L ++  S+N +          I  +A  +K+ S             D +
Sbjct: 302 EDMEVIGGLTNLTTLFLSQNHITD--------IRPLASLSKMDS------------ADFA 341

Query: 176 YNELE 180
              ++
Sbjct: 342 NQVIK 346

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  106 bits (266), Expect = 2e-25
 Identities = 42/228 (18%), Positives = 94/228 (41%), Gaps = 23/228 (10%)

Query: 84  LTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           L ++ L +N++  + I          L  L +S+N +  +     + L  ++   N+++ 
Sbjct: 80  LYALVLVNNKI--SKIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSLVELRIHDNRIRK 137

Query: 140 L---VLNG-SSLISVIAGNNKLQSLIVSPR---PARLQHLDISYNELESLPDWIDTCPEL 192
           +   V +G  ++  +  G N L++    P      +L +L IS  +L  +P   D    L
Sbjct: 138 VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPK--DLPETL 195

Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSIN 251
             +   HN+I  +  +       KL+ L L  N++  + +     + +L+ L L +N ++
Sbjct: 196 NELHLDHNKIQAIELEDL-LRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254

Query: 252 ILPQLFLQNSSKLKVLNISKNCLKMLPS-----LQKGFYLLNISQLRL 294
            +P     +   L+V+ +  N +  +       +  G      + + L
Sbjct: 255 RVPAGL-PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISL 301

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 40/229 (17%), Positives = 87/229 (37%), Gaps = 23/229 (10%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKC---SRNQLKTL 140
           L  + +  N L   I      +L  L + +N I  +  G  + L ++ C     N L+  
Sbjct: 104 LQKLYISKNHLV-EIPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENS 162

Query: 141 -----VLNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWI-DTCPEL 192
                  +G  L  +     KL  +   P+  P  L  L + +N+++++         +L
Sbjct: 163 GFEPGAFDGLKLNYLRISEAKLTGI---PKDLPETLNELHLDHNKIQAIELEDLLRYSKL 219

Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI 252
             +   HN+I  + +      L  L  L L  N+L+ +P+ +  +  L+ ++L +N+I  
Sbjct: 220 YRLGLGHNQIRMIENGSL-SFLPTLRELHLDNNKLSRVPAGLPDLKLLQVVYLHTNNITK 278

Query: 253 LPQ------LFLQNSSKLKVLNISKNCLKMLPSLQKGFY-LLNISQLRL 294
           +         F    +    +++  N +         F  + +   ++ 
Sbjct: 279 VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQF 327

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 94.7 bits (236), Expect = 2e-21
 Identities = 44/228 (19%), Positives = 93/228 (40%), Gaps = 29/228 (12%)

Query: 84  LTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQ 136
            T ++L++N +  + +         +L  L +  N I  +   A   L +L+ +  S+N 
Sbjct: 56  TTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113

Query: 137 LKTLVLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELES--LPDWIDT 188
           L  +  N  SSL+ +   +N+++ +   P+        +  +++  N LE+         
Sbjct: 114 LVEIPPNLPSSLVELRIHDNRIRKV---PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFD 170

Query: 189 CPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQS 247
             +L  +  S  ++T +P          L+ L L  N++ ++      + + L  L L  
Sbjct: 171 GLKLNYLRISEAKLTGIPKDLP----ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY-LLNISQLRL 294
           N I ++    L     L+ L++  N L  +P+   G   L  +  + L
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRVPA---GLPDLKLLQVVYL 271

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 89.7 bits (223), Expect = 9e-20
 Identities = 44/205 (21%), Positives = 75/205 (36%), Gaps = 12/205 (5%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKT 139
            L  V      LK  +      + T LD+  N I  L       L  L ++    N++  
Sbjct: 34  HLRVVQCSDLGLK-AVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISK 92

Query: 140 L---VLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELET 194
           +     +    L  +    N L   I    P+ L  L I  N +  +P  +      +  
Sbjct: 93  IHEKAFSPLRKLQKLYISKNHLVE-IPPNLPSSLVELRIHDNRIRKVPKGVFSGLRNMNC 151

Query: 195 IFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILP 254
           I    N +     +    +  KL+ L++S  +LT +P  +    +L  L L  N I  + 
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNELHLDHNKIQAIE 209

Query: 255 QLFLQNSSKLKVLNISKNCLKMLPS 279
              L   SKL  L +  N ++M+ +
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRMIEN 234

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.5 bits (220), Expect = 2e-19
 Identities = 42/286 (14%), Positives = 88/286 (30%), Gaps = 73/286 (25%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           LQ+  + +N L E P N      L  L    NRI  +P   +   S L N          
Sbjct: 104 LQKLYISKNHLVEIPPN--LPSSLVELRIHDNRIRKVP---KGVFSGLRN---------- 148

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGN---YGNLTTLDVSENSIE 117
                                  +  + +  N L+ +           L  L +SE  + 
Sbjct: 149 -----------------------MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT 185

Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
            +       L  +    N+++ +                L         ++L  L + +N
Sbjct: 186 GIPKDLPETLNELHLDHNKIQAI------------ELEDLLRY------SKLYRLGLGHN 227

Query: 178 ELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS---- 232
           ++  + +  +   P L  +   +N+++++P+      L  L  + L  N +T +      
Sbjct: 228 QIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD--LKLLQVVYLHTNNITKVGVNDFC 285

Query: 233 ---LIRQIASLKYLFLQSNSI---NILPQLFLQNSSKLKVLNISKN 272
                 + A    + L +N +    + P  F +  +    +     
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATF-RCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 11/122 (9%)

Query: 165 RPARLQHLDISYNELESLP-DWIDTCP-----ELETIFASHNRITQLPSQFFCRELGKLH 218
             A          +L+SLP  +   CP      L  +  S   +  +P +          
Sbjct: 2   EEASGAETTSGIPDLDSLPPTYSAMCPFGCHCHLRVVQCSDLGLKAVPKEISPD----TT 57

Query: 219 TLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
            L L  N ++ L     + +  L  L L +N I+ + +       KL+ L ISKN L  +
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI 117

Query: 278 PS 279
           P 
Sbjct: 118 PP 119

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 3e-05
 Identities = 29/209 (13%), Positives = 54/209 (25%), Gaps = 59/209 (28%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L   R+    LT  P  +D    L  L    N+I  + +     +   +           
Sbjct: 174 LNYLRISEAKLTGIP--KDLPETLNELHLDHNKIQAIELED---LLRYSK---------- 218

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIE 117
                                  L  + L  NQ++  I    L     L  L +  N + 
Sbjct: 219 -----------------------LYRLGLGHNQIR-MIENGSLSFLPTLRELHLDNNKLS 254

Query: 118 SL--DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
            +   L  L  L+ +    N +  +            G N    +    + A    + + 
Sbjct: 255 RVPAGLPDLKLLQVVYLHTNNITKV------------GVNDFCPVGFGVKRAYYNGISLF 302

Query: 176 YNELESL---PDWIDTCPELETIFASHNR 201
            N +      P       +   I   + +
Sbjct: 303 NNPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  109 bits (274), Expect = 2e-25
 Identities = 61/296 (20%), Positives = 103/296 (34%), Gaps = 42/296 (14%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIEH 54
           LQE  +    L+E P        LK L  + N+  +L          L       N    
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 55  GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII----LGNYGNLTTLD 110
            +     E+ E                  L  ++L  + ++ +      L N  +L +L+
Sbjct: 340 ELGTGCLENLEN-----------------LRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382

Query: 111 VSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG-----SSLISVIAGNNKLQSLIV 162
           +S N   SL   A     +LE +  +  +LK             L  +   ++ L     
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE 442

Query: 163 S--PRPARLQHLDISYNELESL----PDWIDTCPELETIFASHNRITQLPSQFFCRELGK 216
                   LQHL++  N          + + T   LE +  S   ++ +    F   L  
Sbjct: 443 QLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAF-TSLKM 501

Query: 217 LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
           ++ + LS NRLTS            YL L SN I+I+    L   S+ + +N+ +N
Sbjct: 502 MNHVDLSHNRLTSSSIEALSHLKGIYLNLASNHISIILPSLLPILSQQRTINLRQN 557

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  107 bits (268), Expect = 1e-24
 Identities = 55/318 (17%), Positives = 96/318 (30%), Gaps = 43/318 (13%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
           L    + R  +     +   S  RL  L    N +  +          L           
Sbjct: 59  LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQT--- 115

Query: 54  HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDV 111
            GI+                       +  L S+ L SN +             L  LD 
Sbjct: 116 -GISSIDFIPLHN--------------QKTLESLYLGSNHISSIKLPKGFPTEKLKVLDF 160

Query: 112 SENSIESLDLGALNRLESIKC-----SRNQLKTL---VLNGSSLISVIAGNNKLQSLIVS 163
             N+I  L    ++ L+         + N +  +     + +   S+  G  +   +I  
Sbjct: 161 QNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 164 P----RPARLQHLDISYNELESLPDWI---DTCPELETIFASHNRITQLPSQFFCRELGK 216
                    L        + E +   +        +E+I    +    + S  F      
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF-HCFSG 279

Query: 217 LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM 276
           L  L L+   L+ LPS +  +++LK L L +N    L Q+   N   L  L+I  N  ++
Sbjct: 280 LQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 277 LPSLQKGFYLLNISQLRL 294
                    L N+ +L L
Sbjct: 340 ELGTGCLENLENLRELDL 357

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (264), Expect = 4e-24
 Identities = 44/315 (13%), Positives = 106/315 (33%), Gaps = 59/315 (18%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           L+     +  ++        +   L+ L    N IS + +    P               
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTE------------- 153

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLT--TLDVSENS 115
                                  +L  ++ ++N +       + +    T  +L+++ N 
Sbjct: 154 -----------------------KLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190

Query: 116 IESLDLGALN--RLESIKCSRNQLKTLVLNG------SSLISVIAGNNKLQSL----IVS 163
           I  ++ GA +    +S+     Q   ++  G       SL      +   + +       
Sbjct: 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEG 250

Query: 164 PRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL 222
                ++ +++  +   ++  +       L+ +  +   +++LPS      L  L  L L
Sbjct: 251 LCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLV--GLSTLKKLVL 308

Query: 223 SFNRLTSLPSL-IRQIASLKYLFLQSNSINI-LPQLFLQNSSKLKVLNISKNCLKMLPSL 280
           S N+  +L  +      SL +L ++ N+  + L    L+N   L+ L++S + ++     
Sbjct: 309 SANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCC 368

Query: 281 QKGFY-LLNISQLRL 294
                 L ++  L L
Sbjct: 369 NLQLRNLSHLQSLNL 383

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  105 bits (263), Expect = 6e-24
 Identities = 56/316 (17%), Positives = 115/316 (36%), Gaps = 40/316 (12%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
                ++ ND+             + L+    +   L +F     S + ++      +  
Sbjct: 181 NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNL-LVIFKGLKNSTIQSLWLGTFEDMD 239

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES 118
           +ED        + E         + S+NL+ +            +  L  LD++   +  
Sbjct: 240 DEDISPAVFEGLCEMS-------VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSE 292

Query: 119 LD--LGALNRLESIKCSRNQ--------------LKTLVLNGSSLISVIAGNNKLQSLIV 162
           L   L  L+ L+ +  S N+              L  L + G++    + G   L++L  
Sbjct: 293 LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLEL-GTGCLENLE- 350

Query: 163 SPRPARLQHLDISYNELESLP---DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHT 219
                 L+ LD+S++++E+       +     L+++  S+N    L ++ F +E  +L  
Sbjct: 351 -----NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAF-KECPQLEL 404

Query: 220 LQLSFNRLTSL--PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
           L L+F RL      S  + +  LK L L  + ++I  +        L+ LN+  N     
Sbjct: 405 LDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKG 464

Query: 278 PSLQKGFYLLNISQLR 293
              +    L  + +L 
Sbjct: 465 NIQKTNS-LQTLGRLE 479

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  100 bits (251), Expect = 2e-22
 Identities = 52/297 (17%), Positives = 102/297 (34%), Gaps = 53/297 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
           ++   + ++       N    F  L+ L      +S LP  L   +S L       N  E
Sbjct: 256 VESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG-LSTLKKLVLSANKFE 314

Query: 54  HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII---LGNYGNLTTLD 110
           +                  + +        LT ++++ N  +  +    L N  NL  LD
Sbjct: 315 N------------------LCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELD 356

Query: 111 VSENSIESLDL--GALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPAR 168
           +S + IE+ D     L  L         L++L L+ +  +S+       +         +
Sbjct: 357 LSHDDIETSDCCNLQLRNLSH-------LQSLNLSYNEPLSLKTEA--FKEC------PQ 401

Query: 169 LQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
           L+ LD+++  L+             L+ +  SH+ +     Q F   L  L  L L  N 
Sbjct: 402 LELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF-DGLPALQHLNLQGNH 460

Query: 227 LTSL----PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
                    + ++ +  L+ L L    ++ + Q    +   +  +++S N L     
Sbjct: 461 FPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSI 517

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 98.9 bits (247), Expect = 5e-22
 Identities = 37/228 (16%), Positives = 77/228 (33%), Gaps = 18/228 (7%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLK 138
              +    N L            NLT LD++   I  +        +RL+++  + N L 
Sbjct: 35  TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLI 94

Query: 139 TL---VLNG-SSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESLPD-WIDTCPE 191
            +    L+G  +L  +      + S+   P      L+ L +  N + S+         +
Sbjct: 95  FMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEK 154

Query: 192 LETIFASHNRITQLPSQFFCRELGKLH--TLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
           L+ +   +N I  L  +     L +    +L L+ N +  +       A  + L      
Sbjct: 155 LKVLDFQNNAIHYLSKEDM-SSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

Query: 250 IN--ILPQLFLQNSSKLKVLNISKNCLKML-PSLQKGFYLLNISQLRL 294
               I   L       L +        + + P++ +G   +++  + L
Sbjct: 214 NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL 261

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 96.6 bits (241), Expect = 3e-21
 Identities = 40/223 (17%), Positives = 75/223 (33%), Gaps = 23/223 (10%)

Query: 86  SVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGS 145
           + N  +  L   I      +   L+ S N + ++     +RL         L  L L   
Sbjct: 16  TYNCENLGLN-EIPGTLPNSTECLEFSFNVLPTIQNTTFSRLI-------NLTFLDLTRC 67

Query: 146 SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQ 204
            +  +       QS        RL  L ++ N L  + +  +     L+ +F     I+ 
Sbjct: 68  QIYWIHEDT--FQSQ------HRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS 119

Query: 205 LPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSK 263
           +           L +L L  N ++S+          LK L  Q+N+I+ L +  + +  +
Sbjct: 120 IDFIPL-HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQ 178

Query: 264 LKV--LNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALI 304
                LN++ N +  +      F       L   G  N   + 
Sbjct: 179 ATNLSLNLNGNDIAGIEP--GAFDSAVFQSLNFGGTQNLLVIF 219

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 72.4 bits (178), Expect = 1e-13
 Identities = 19/111 (17%), Positives = 39/111 (35%), Gaps = 4/111 (3%)

Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
           +  +     L  +P  +      E +  S N +  + +  F R L  L  L L+  ++  
Sbjct: 15  KTYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSR-LINLTFLDLTRCQIYW 71

Query: 230 LPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           +     +    L  L L +N +  + +  L     LK L   +  +  +  
Sbjct: 72  IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDF 122

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 53.1 bits (128), Expect = 2e-07
 Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 72/239 (30%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           L+   +  + L        D  P L+ L+   N      +   + +  L           
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR--------- 477

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
                                   L  + L    L         +   +  +D+S N + 
Sbjct: 478 ------------------------LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLT 513

Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS--PRPARLQHLDIS 175
           S  + AL          + LK + LN +        +N +  ++ S  P  ++ + +++ 
Sbjct: 514 SSSIEAL----------SHLKGIYLNLA--------SNHISIILPSLLPILSQQRTINLR 555

Query: 176 YN------ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
            N            +W             + +  +      C     L  ++LS   L+
Sbjct: 556 QNPLDCTCSNIYFLEWYK----------ENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 4/69 (5%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
            +E+ K  T       L  +P  +    S + L    N +  +          L  L+++
Sbjct: 10  EKEVNK--TYNCENLGLNEIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLT 65

Query: 271 KNCLKMLPS 279
           +  +  +  
Sbjct: 66  RCQIYWIHE 74

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score =  104 bits (261), Expect = 4e-25
 Identities = 59/212 (27%), Positives = 85/212 (40%), Gaps = 22/212 (10%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
              VN     L   +      + T L +SEN + +  L  L           +L  L L+
Sbjct: 12  HLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPY-------TRLTQLNLD 63

Query: 144 GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT 203
                       +L  L V      L  LD+S+N+L+SLP    T P L  +  S NR+T
Sbjct: 64  ----------RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT 113

Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSS 262
            LP     R LG+L  L L  N L +LP  L+     L+ L L +N++  LP   L    
Sbjct: 114 SLPLGAL-RGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 263 KLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
            L  L + +N L  +P  +  F    +    L
Sbjct: 173 NLDTLLLQENSLYTIP--KGFFGSHLLPFAFL 202

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 86.3 bits (214), Expect = 7e-19
 Identities = 49/176 (27%), Positives = 77/176 (43%), Gaps = 14/176 (7%)

Query: 84  LTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGA-LNRLESIKCSRNQLKTL 140
            T ++L  N L       L  Y  LT L++    +  L +   L  L ++  S NQL++L
Sbjct: 33  TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL 92

Query: 141 --VLNG-SSLISVIAGNNKLQSLIVSP----RPARLQHLDISYNELESLPDWI-DTCPEL 192
             +     +L  +    N+L SL            LQ L +  NEL++LP  +    P+L
Sbjct: 93  PLLGQTLPALTVLDVSFNRLTSL--PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKL 150

Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSN 248
           E +  ++N +T+LP+      L  L TL L  N L ++P        L + FL  N
Sbjct: 151 EKLSLANNNLTELPAGLL-NGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 75.9 bits (187), Expect = 2e-15
 Identities = 38/138 (27%), Positives = 56/138 (40%), Gaps = 9/138 (6%)

Query: 145 SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWI-DTCPELETIFASHNR 201
           +S + V      L +L   P   P     L +S N L +           L  +      
Sbjct: 10  ASHLEVNCDKRNLTAL---PPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
           +T+L        L  L TL LS N+L SLP L + + +L  L +  N +  LP   L+  
Sbjct: 67  LTKLQVD---GTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL 123

Query: 262 SKLKVLNISKNCLKMLPS 279
            +L+ L +  N LK LP 
Sbjct: 124 GELQELYLKGNELKTLPP 141

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 40/201 (19%), Positives = 62/201 (30%), Gaps = 74/201 (36%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIAE 58
           L    +  N L   P    + P L  L  + NR++ LP                      
Sbjct: 79  LGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGAL------------------ 120

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENS 115
                      G+          GEL  + L+ N+LK T+   +L     L  L ++ N+
Sbjct: 121 ----------RGL----------GELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNN 159

Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA----RLQH 171
           +  L  G LN L         L TL+L            N L ++   P+       L  
Sbjct: 160 LTELPAGLLNGL-------ENLDTLLLQ----------ENSLYTI---PKGFFGSHLLPF 199

Query: 172 LDISYN------ELESLPDWI 186
             +  N      E+     W+
Sbjct: 200 AFLHGNPWLCNCEILYFRRWL 220

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 47.0 bits (112), Expect = 7e-06
 Identities = 16/84 (19%), Positives = 27/84 (32%), Gaps = 5/84 (5%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
             ++     +      LT+LP  +        L L  N +       L   ++L  LN+ 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 271 KNCLKMLPSLQKGFYLLNISQLRL 294
           +  L  L        L  +  L L
Sbjct: 64  RAELTKLQVDGT---LPVLGTLDL 84

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  107 bits (270), Expect = 7e-25
 Identities = 42/210 (20%), Positives = 75/210 (35%), Gaps = 17/210 (8%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-----LGALNRLESIKCSRNQLK 138
           L  +   SN+        +  +L  LD+S N +               L+ +  S N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 139 TL---VLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESL-PDWIDTC 189
           T+    L    L  +   ++ L+ +             L +LDIS+           +  
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMS--EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSN 248
             LE +  + N   +        EL  L  L LS  +L  L P+    ++SL+ L +  N
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 504

Query: 249 SINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           +   L     +  + L+VL+ S N +    
Sbjct: 505 NFFSLDTFPYKCLNSLQVLDYSLNHIMTSK 534

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  104 bits (261), Expect = 9e-24
 Identities = 38/204 (18%), Positives = 76/204 (37%), Gaps = 10/204 (4%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV-- 141
           ++S +L S  ++             L++            L  L+ +  + N+       
Sbjct: 284 VSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSE 343

Query: 142 LNGSSLISVIAGNNKLQSLIVSPR----PARLQHLDISYNELESLPDWIDTCPELETIFA 197
           ++  SL  +    N L       +       L++LD+S+N + ++        +LE +  
Sbjct: 344 VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 403

Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSI--NILP 254
            H+ + Q+        L  L  L +S          +   ++SL+ L +  NS   N LP
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP 463

Query: 255 QLFLQNSSKLKVLNISKNCLKMLP 278
            +F      L  L++S+  L+ L 
Sbjct: 464 DIF-TELRNLTFLDLSQCQLEQLS 486

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 98.6 bits (246), Expect = 7e-22
 Identities = 53/236 (22%), Positives = 90/236 (38%), Gaps = 26/236 (11%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
             +++L  N L+        ++  L  LD+S   I++++ GA   L       + L TL+
Sbjct: 30  TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSL-------SHLSTLI 82

Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHN 200
           L G+ + S+  G      L        LQ L      L SL    I     L+ +  +HN
Sbjct: 83  LTGNPIQSLALGA--FSGLS------SLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKY----LFLQSNSINILPQ 255
            I       +   L  L  L LS N++ S+  + +R +  +      L L  N +N +  
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP 194

Query: 256 LFLQNSSKLKVLNISKNCL--KMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDS 309
              +    L  L +  N     ++ +  +G   L + +L L  F N   L     S
Sbjct: 195 GAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKS 249

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 92.8 bits (231), Expect = 6e-20
 Identities = 51/228 (22%), Positives = 101/228 (44%), Gaps = 32/228 (14%)

Query: 83  ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
           EL  ++L   +++        +  +L+TL ++ N I+SL LGA + L S       L+ L
Sbjct: 53  ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS-------LQKL 105

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL--PDWIDTCPELETIFAS 198
           V   ++L S+   N  +  L        L+ L++++N ++S   P++      LE +  S
Sbjct: 106 VAVETNLASLE--NFPIGHL------KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS 157

Query: 199 HNRITQLPSQFFCRELGKLH----TLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI-L 253
            N+I  +      R L ++     +L LS N +  +     +   L  L L++N  ++ +
Sbjct: 158 SNKIQSIYCTDL-RVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNV 216

Query: 254 PQLFLQNSSKLKVLNISKNCLKMLPSLQ-------KGFYLLNISQLRL 294
            +  +Q  + L+V  +     +   +L+       +G   L I + RL
Sbjct: 217 MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 90.5 bits (225), Expect = 3e-19
 Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 26/217 (11%)

Query: 85  TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
            +           I      +   LD+S N +  L   +            +L+ L L+ 
Sbjct: 10  ITYQCMELNFY-KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFP-------ELQVLDLSR 61

Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRIT 203
             + ++  G    QSL      + L  L ++ N ++SL          L+ + A    + 
Sbjct: 62  CEIQTIEDGA--YQSL------SHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSL--PSLIRQIASLKYLFLQSNSINILPQLFLQNS 261
            L +      L  L  L ++ N + S   P     + +L++L L SN I  +    L+  
Sbjct: 114 SLENFPI-GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 172

Query: 262 SKLKV----LNISKNCLKMLPSLQKGFYLLNISQLRL 294
            ++ +    L++S N +  +      F  + + +L L
Sbjct: 173 HQMPLLNLSLDLSLNPMNFIQP--GAFKEIRLHKLTL 207

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 85.9 bits (213), Expect = 7e-18
 Identities = 36/245 (14%), Positives = 84/245 (34%), Gaps = 28/245 (11%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLK 138
           L+++ L  N ++           +L  L   E ++ SL+   +G L  L+ +  + N ++
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ 137

Query: 139 TLVL-----NGSSLISVIAGNNKLQSLIVSP------RPARLQHLDISYNELESLPDWID 187
           +  L     N ++L  +   +NK+QS+  +        P     LD+S N +  +     
Sbjct: 138 SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAF 197

Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR----QIASLKYL 243
               L  +   +N  +    +   + L  L   +L      +  +L +     +  L  L
Sbjct: 198 KEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL 257

Query: 244 FLQSNSINILPQLF------LQNSSKLKVLNISKNCLKMLPSLQKGFYL--LNISQLRLP 295
            ++   +  L              + +   ++    ++ +      F    L +   +  
Sbjct: 258 TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFG 317

Query: 296 GFCNS 300
            F   
Sbjct: 318 QFPTL 322

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 79.3 bits (196), Expect = 9e-16
 Identities = 42/237 (17%), Positives = 80/237 (33%), Gaps = 33/237 (13%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLT----TLDVSENSIESLDLGALN--RLESIKCSRN 135
           L  ++L SN+++      L     +     +LD+S N +  +  GA    RL  +    N
Sbjct: 151 LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNN 210

Query: 136 QLKTLV-------LNGSSLISVIAGNNKLQSLIVSPRPA---RLQHLDISYNELESL--- 182
                V       L G  +  ++ G  + +  +     +    L +L I    L  L   
Sbjct: 211 FDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270

Query: 183 ----PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
                D  +    + +       I ++    +         L+L   +    P+L   + 
Sbjct: 271 LDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY---NFGWQHLELVNCKFGQFPTLK--LK 325

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY-LLNISQLRL 294
           SLK L   SN           +   L+ L++S+N L       +  +   ++  L L
Sbjct: 326 SLKRLTFTSNKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDL 380

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 77.4 bits (191), Expect = 4e-15
 Identities = 47/299 (15%), Positives = 89/299 (29%), Gaps = 84/299 (28%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+   +  N +     N     +L+ L    + +  +        S   ++         
Sbjct: 375 LKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS-----EFSVFLSLR-------- 421

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSI-E 117
                                  L  +++     +     I     +L  L ++ NS  E
Sbjct: 422 ----------------------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 459

Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
           +        L +                                       L  LD+S  
Sbjct: 460 NFLPDIFTELRN---------------------------------------LTFLDLSQC 480

Query: 178 ELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP--SLI 234
           +LE L P   ++   L+ +  SHN    L +  + + L  L  L  S N + +     L 
Sbjct: 481 QLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQ 539

Query: 235 RQIASLKYLFLQSNSI--NILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNIS 290
              +SL +L L  N        Q FLQ     + L +    ++   PS ++G  +L+++
Sbjct: 540 HFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLSLN 598

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
           C E+    T Q        +P  +    S K L L  N +  L      +  +L+VL++S
Sbjct: 3   CVEVVPNITYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60

Query: 271 KNCLKMLPS 279
           +  ++ +  
Sbjct: 61  RCEIQTIED 69

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score =  103 bits (258), Expect = 1e-24
 Identities = 46/201 (22%), Positives = 76/201 (37%), Gaps = 19/201 (9%)

Query: 83  ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
               + L  N++            NLT L +  N +  +D  A   L         L+ L
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLAL-------LEQL 85

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASH 199
            L+ ++ +  +        L       RL  L +    L+ L          L+ ++   
Sbjct: 86  DLSDNAQLRSVD-PATFHGLG------RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQD 138

Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFL 258
           N +  LP   F R+LG L  L L  NR++S+P    R + SL  L L  N +  +     
Sbjct: 139 NALQALPDDTF-RDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF 197

Query: 259 QNSSKLKVLNISKNCLKMLPS 279
           ++  +L  L +  N L  LP+
Sbjct: 198 RDLGRLMTLYLFANNLSALPT 218

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 80.8 bits (200), Expect = 4e-17
 Identities = 52/261 (19%), Positives = 88/261 (33%), Gaps = 72/261 (27%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
            Q   +  N ++  P     +   L  L    N ++ +    F     + L         
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAF-----TGLAL------- 81

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSEN 114
                                     L  ++L  N    ++        G L TL +   
Sbjct: 82  --------------------------LEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115

Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RL 169
            ++ L  G    L +       L+ L L           +N LQ+L   P         L
Sbjct: 116 GLQELGPGLFRGLAA-------LQYLYLQ----------DNALQAL---PDDTFRDLGNL 155

Query: 170 QHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
            HL +  N + S+P+        L+ +    NR+  +    F R+LG+L TL L  N L+
Sbjct: 156 THLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAF-RDLGRLMTLYLFANNLS 214

Query: 229 SLPS-LIRQIASLKYLFLQSN 248
           +LP+  +  + +L+YL L  N
Sbjct: 215 ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 37/201 (18%), Positives = 58/201 (28%), Gaps = 72/201 (35%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
           L    +DR  L E           L++L    N +  LP   F       L N       
Sbjct: 107 LHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF-----RDLGN------- 154

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSEN 114
                                     LT + L  N++  ++         +L  L + +N
Sbjct: 155 --------------------------LTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQN 187

Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL---IVSPRPARLQH 171
            +  +   A   L         L TL L            N L +L    ++P  A LQ+
Sbjct: 188 RVAHVHPHAFRDLGR-------LMTLYLF----------ANNLSALPTEALAPLRA-LQY 229

Query: 172 LDISYN------ELESLPDWI 186
           L ++ N          L  W+
Sbjct: 230 LRLNDNPWVCDCRARPLWAWL 250

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 26/62 (41%), Gaps = 2/62 (3%)

Query: 218 HTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML 277
            T       L ++P  I   A+ + +FL  N I+ +P    +    L +L +  N L  +
Sbjct: 14  VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 278 PS 279
            +
Sbjct: 72  DA 73

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  105 bits (265), Expect = 1e-24
 Identities = 52/218 (23%), Positives = 95/218 (43%), Gaps = 25/218 (11%)

Query: 83  ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
           E   ++L  N++K        ++ +L  L+++EN + +++ GA N L +       L+TL
Sbjct: 33  ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN-------LRTL 85

Query: 141 VLNGSSLISVIAGNNKLQSLIVS--PRPARLQHLDISYNELESLPD-WIDTCPELETIFA 197
            L           +N+L+ + +      + L  LDIS N++  L D        L+++  
Sbjct: 86  GLR----------SNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135

Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQL 256
             N +  +  + F   L  L  L L    LTS+P+  +  +  L  L L+  +IN +   
Sbjct: 136 GDNDLVYISHRAF-SGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDY 194

Query: 257 FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
             +   +LKVL IS        +     Y LN++ L +
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMT-PNCLYGLNLTSLSI 231

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  104 bits (260), Expect = 6e-24
 Identities = 48/281 (17%), Positives = 88/281 (31%), Gaps = 61/281 (21%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
           L +  +  N +             LK L    N + ++    F     S LN+       
Sbjct: 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAF-----SGLNS------- 153

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENS 115
                                     L  + L    L    T  L +   L  L +   +
Sbjct: 154 --------------------------LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLN 187

Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
           I ++   +  RL        +LK L ++    +  +  N              L  L I+
Sbjct: 188 INAIRDYSFKRLY-------RLKVLEISHWPYLDTMTPN--------CLYGLNLTSLSIT 232

Query: 176 YNELESLPDW-IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI 234
           +  L ++P   +     L  +  S+N I+ +       EL +L  +QL   +L  +    
Sbjct: 233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSML-HELLRLQEIQLVGGQLAVVEPYA 291

Query: 235 -RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
            R +  L+ L +  N +  L +    +   L+ L +  N L
Sbjct: 292 FRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  102 bits (257), Expect = 2e-23
 Identities = 58/288 (20%), Positives = 96/288 (33%), Gaps = 56/288 (19%)

Query: 7   DRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIEHGIAEER 60
            R      P  +      + L   +NRI  L          L       N++        
Sbjct: 19  HRKRFVAVP--EGIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSA------ 70

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIES 118
                       VE         L ++ LRSN+LK     +     NLT LD+SEN I  
Sbjct: 71  ------------VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVI 118

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLD 173
           L       L         LK+L +           +N L  +      A      L+ L 
Sbjct: 119 LLDYMFQDL-------YNLKSLEVG----------DNDLVYI---SHRAFSGLNSLEQLT 158

Query: 174 ISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF-NRLTSLP 231
           +    L S+P   +     L  +   H  I  +    F + L +L  L++S    L ++ 
Sbjct: 159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF-KRLYRLKVLEISHWPYLDTMT 217

Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
                  +L  L +   ++  +P L +++   L+ LN+S N +  +  
Sbjct: 218 PNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEG 265

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  100 bits (250), Expect = 1e-22
 Identities = 53/295 (17%), Positives = 118/295 (40%), Gaps = 57/295 (19%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           L+E  ++ N ++       ++   L+ L    NR+  +P+ +   +S             
Sbjct: 58  LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS------------- 104

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIE 117
                                   LT +++  N++      +  +  NL +L+V +N + 
Sbjct: 105 -----------------------NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV 141

Query: 118 SLDLGA---LNRLESIKCSRNQLKTL---VLNG-SSLISVIAGNNKLQSLIVSPRPA--- 167
            +   A   LN LE +   +  L ++    L+    LI +   +  + ++      +   
Sbjct: 142 YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAI---RDYSFKR 198

Query: 168 --RLQHLDISYNE-LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
             RL+ L+IS+   L+++         L ++  +H  +T +P     R L  L  L LS+
Sbjct: 199 LYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV-RHLVYLRFLNLSY 257

Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           N ++++   ++ ++  L+ + L    + ++     +  + L+VLN+S N L  L 
Sbjct: 258 NPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE 312

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 64.4 bits (157), Expect = 4e-11
 Identities = 40/256 (15%), Positives = 79/256 (30%), Gaps = 81/256 (31%)

Query: 1   LQEFRVDRNDLTEFPGNQDS-FPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           L++  +++ +LT  P    S    L  L      I+ +     +    L           
Sbjct: 154 LEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR---DYSFKRLYR--------- 201

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE 117
                                   L  + +       T+        NLT+L ++  ++ 
Sbjct: 202 ------------------------LKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
           ++   A+  L                                         L+ L++SYN
Sbjct: 238 AVPYLAVRHLVY---------------------------------------LRFLNLSYN 258

Query: 178 ELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIR 235
            + ++   +      L+ I     ++  +    F R L  L  L +S N+LT+L  S+  
Sbjct: 259 PISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAF-RGLNYLRVLNVSGNQLTTLEESVFH 317

Query: 236 QIASLKYLFLQSNSIN 251
            + +L+ L L SN + 
Sbjct: 318 SVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 2e-08
 Identities = 19/94 (20%), Positives = 32/94 (34%), Gaps = 6/94 (6%)

Query: 188 TC-PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFL 245
            C  +   +     R   +P             L L  NR+ +L          L+ L L
Sbjct: 8   ECSAQDRAVLCHRKRFVAVPEGIPTE----TRLLDLGKNRIKTLNQDEFASFPHLEELEL 63

Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
             N ++ +      N   L+ L +  N LK++P 
Sbjct: 64  NENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPL 97

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 13/69 (18%), Positives = 25/69 (36%), Gaps = 2/69 (2%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
           C    +   +     R  ++P  I      + L L  N I  L Q    +   L+ L ++
Sbjct: 7   CECSAQDRAVLCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELN 64

Query: 271 KNCLKMLPS 279
           +N +  +  
Sbjct: 65  ENIVSAVEP 73

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  107 bits (268), Expect = 2e-24
 Identities = 57/306 (18%), Positives = 103/306 (33%), Gaps = 55/306 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           ++   +    +        ++   LK L+ A N+I+ +          L+N         
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA---DEAFYGLDN--------- 315

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIE 117
                                   L  +NL  N L    +        +  +D+ +N I 
Sbjct: 316 ------------------------LQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIA 351

Query: 118 SLDLGALNRLESIKC---SRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDI 174
            +       LE ++      N L T+     S+  +    NKL +L           + +
Sbjct: 352 IIQDQTFKFLEKLQTLDLRDNALTTI-HFIPSIPDIFLSGNKLVTL--PKINLTANLIHL 408

Query: 175 SYNELESLPDWIDTC--PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-- 230
           S N LE+L         P L+ +  + NR +         E   L  L L  N L     
Sbjct: 409 SENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWE 468

Query: 231 ----PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP--SLQKGF 284
                 +   ++ L+ L+L  N +N LP     + + L+ L+++ N L +L    L    
Sbjct: 469 TELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANL 528

Query: 285 YLLNIS 290
            +L+IS
Sbjct: 529 EILDIS 534

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  103 bits (258), Expect = 3e-23
 Identities = 64/302 (21%), Positives = 116/302 (38%), Gaps = 42/302 (13%)

Query: 1   LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIE---H 54
           L E R+    L++       F     L  L  ++N+I  L   L      LN++      
Sbjct: 99  LFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY--LHPSFGKLNSLKSIDFS 156

Query: 55  G--IAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILG--------NYG 104
              I    E + E            P     L+  +L +N L   + +            
Sbjct: 157 SNQIFLVCEHELE------------PLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNM 204

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
            L  LDVS N       G  +       S++Q  +L+L    ++    G + ++    + 
Sbjct: 205 VLEILDVSGNGWTVDITGNFSNA----ISKSQAFSLILA-HHIMGAGFGFHNIKDPDQNT 259

Query: 165 ----RPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHT 219
                 + ++HLD+S+  + SL     +T  +L+ +  ++N+I ++  + F   L  L  
Sbjct: 260 FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAF-YGLDNLQV 318

Query: 220 LQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           L LS+N L  L S     +  + Y+ LQ N I I+     +   KL+ L++  N L  + 
Sbjct: 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIH 378

Query: 279 SL 280
            +
Sbjct: 379 FI 380

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 94.5 bits (235), Expect = 2e-20
 Identities = 48/247 (19%), Positives = 88/247 (35%), Gaps = 27/247 (10%)

Query: 87  VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSS 146
              R   L  T +         L +S N I ++   +   LE       QL+ L L    
Sbjct: 9   AFYRFCNL--TQVPQVLNTTERLLLSFNYIRTVTASSFPFLE-------QLQLLELGSQY 59

Query: 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQL 205
               I      ++L        L+ LD+  +++  L  D       L  +      ++  
Sbjct: 60  TPLTID-KEAFRNL------PNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDA 112

Query: 206 P-SQFFCRELGKLHTLQLSFNRLTSLP--SLIRQIASLKYLFLQSNSINILPQLFLQN-- 260
                + R L  L  L LS N++ SL       ++ SLK +   SN I ++ +  L+   
Sbjct: 113 VLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172

Query: 261 SSKLKVLNISKNCLKMLPSLQ-----KGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDI 315
              L   +++ N L    S+        F  + +  L + G   +  + G F +  +   
Sbjct: 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ 232

Query: 316 ASTLVQS 322
           A +L+ +
Sbjct: 233 AFSLILA 239

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 92.9 bits (231), Expect = 6e-20
 Identities = 59/348 (16%), Positives = 106/348 (30%), Gaps = 68/348 (19%)

Query: 1   LQEFRVDRNDLT--EFPGNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGI 56
           L    + +N +       +      LK +  + N+I  +            L+       
Sbjct: 125 LTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAAN 184

Query: 57  AEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII--------------LGN 102
                            +   P     L  +++  N     I               L  
Sbjct: 185 ------SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238

Query: 103 YGNLTTLDVSENSIESLDLGAL-----NRLESIKCSRNQLKTL---VLNG-SSLISVIAG 153
             ++       ++I+  D         + +  +  S   + +L   V      L  +   
Sbjct: 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLA 298

Query: 154 NNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWIDT-CPELETIFASHNRITQLPS 207
            NK+  +      A      LQ L++SYN L  L        P++  I    N I  +  
Sbjct: 299 YNKINKI---ADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQD 355

Query: 208 QFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL----------- 256
           Q F + L KL TL L  N LT++  +     S+  +FL  N +  LP++           
Sbjct: 356 QTF-KFLEKLQTLDLRDNALTTIHFI----PSIPDIFLSGNKLVTLPKINLTANLIHLSE 410

Query: 257 ----------FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
                     FL     L++L +++N        Q      ++ QL L
Sbjct: 411 NRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFL 458

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 85.6 bits (212), Expect = 1e-17
 Identities = 42/235 (17%), Positives = 76/235 (32%), Gaps = 38/235 (16%)

Query: 83  ELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQ 136
           +L  + L S     TI      N  NL  LD+  + I  L   A   L  L  ++     
Sbjct: 49  QLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCG 108

Query: 137 LKTLVLNG------SSLISVIAGNNKLQSLIVSPRPA---RLQHLDISYNELESLPD--- 184
           L   VL         +L  +    N+++SL + P       L+ +D S N++  + +   
Sbjct: 109 LSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHEL 168

Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGK-----LHTLQLSFNRLTSLPS------- 232
                  L     + N +    S  + + +       L  L +S N  T   +       
Sbjct: 169 EPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAI 228

Query: 233 ------LIRQIASLKYLFLQSNSINILPQLFLQN--SSKLKVLNISKNCLKMLPS 279
                  +     +       ++I    Q        S ++ L++S   +  L S
Sbjct: 229 SKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS 283

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 55.2 bits (133), Expect = 4e-08
 Identities = 43/219 (19%), Positives = 76/219 (34%), Gaps = 40/219 (18%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEH---- 54
           LQ   +  N LT         P +  +  + N++  LP      + +    N +E+    
Sbjct: 364 LQTLDLRDNALTTIHF----IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL 419

Query: 55  ----GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI-------ILGNY 103
                +   +     Q+        + P     L  + L  N L+          +    
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479

Query: 104 GNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVS 163
            +L  L ++ N + SL  G  + L +       L+ L LN          +N+L  L  +
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTA-------LRGLSLN----------SNRLTVLSHN 522

Query: 164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRI 202
             PA L+ LDIS N+L +          L  +  +HN+ 
Sbjct: 523 DLPANLEILDISRNQLLAPNPD--VFVSLSVLDITHNKF 559

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 12/66 (18%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
           C   G++      F  LT +P ++    + + L L  N I  +         +L++L + 
Sbjct: 2   CSFDGRI--AFYRFCNLTQVPQVLN---TTERLLLSFNYIRTVTASSFPFLEQLQLLELG 56

Query: 271 KNCLKM 276
                +
Sbjct: 57  SQYTPL 62

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  103 bits (259), Expect = 2e-24
 Identities = 43/225 (19%), Positives = 94/225 (41%), Gaps = 21/225 (9%)

Query: 84  LTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           L ++ L +N++  + I          L  L +S+N ++ L       L+ ++   N++  
Sbjct: 78  LHTLILINNKI--SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITK 135

Query: 140 L---VLNG-SSLISVIAGNNKLQSLIVSPR----PARLQHLDISYNELESLPDWIDTCPE 191
           +   V NG + +I V  G N L+S  +         +L ++ I+   + ++P      P 
Sbjct: 136 VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ--GLPPS 193

Query: 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSI 250
           L  +    N+IT++ +    + L  L  L LSFN ++++ +  +     L+ L L +N +
Sbjct: 194 LTELHLDGNKITKVDAASL-KGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL 252

Query: 251 NILPQLFLQNSSKLKVLNISKNCLKMLP--SLQKGFYLLNISQLR 293
             +P     +   ++V+ +  N +  +         Y    +   
Sbjct: 253 VKVPGGL-ADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 296

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 99.3 bits (248), Expect = 4e-23
 Identities = 38/211 (18%), Positives = 80/211 (37%), Gaps = 23/211 (10%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKTL 140
           L  + L  NQLK  +       L  L V EN I  +       LN++  ++   N LK+ 
Sbjct: 102 LERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS 160

Query: 141 VLNG------SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWI-DTCPE 191
            +          L  +   +  + ++   P+  P  L  L +  N++  +          
Sbjct: 161 GIENGAFQGMKKLSYIRIADTNITTI---PQGLPPSLTELHLDGNKITKVDAASLKGLNN 217

Query: 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN 251
           L  +  S N I+ + +         L  L L+ N+L  +P  +     ++ ++L +N+I+
Sbjct: 218 LAKLGLSFNSISAVDNGSL-ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNIS 276

Query: 252 IL------PQLFLQNSSKLKVLNISKNCLKM 276
            +      P  +    +    +++  N ++ 
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQY 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 97.4 bits (243), Expect = 2e-22
 Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 30/230 (13%)

Query: 83  ELTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGALNRLESIKC---SRN 135
           +   ++L++N++  T I      N  NL TL +  N I  +  GA   L  ++    S+N
Sbjct: 53  DTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110

Query: 136 QLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESL---PDWI 186
           QLK L      +L  +    N++  +    +       ++  +++  N L+S        
Sbjct: 111 QLKELPEKMPKTLQELRVHENEITKV---RKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167

Query: 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFL 245
               +L  I  +   IT +P          L  L L  N++T + +   + + +L  L L
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPP----SLTELHLDGNKITKVDAASLKGLNNLAKLGL 223

Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY-LLNISQLRL 294
             NSI+ +    L N+  L+ L+++ N L  +P    G      I  + L
Sbjct: 224 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG---GLADHKYIQVVYL 270

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 89.3 bits (222), Expect = 1e-19
 Identities = 43/287 (14%), Positives = 94/287 (32%), Gaps = 74/287 (25%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L+   + +N L E P        L+ L   +N I+ +    +   + LN           
Sbjct: 102 LERLYLSKNQLKELPEK--MPKTLQELRVHENEITKVR---KSVFNGLNQ---------- 146

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSI 116
                                  +  V L +N LK + I          L+ + +++ +I
Sbjct: 147 -----------------------MIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183

Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISY 176
            ++  G    L  +    N++  +                L+ L        L  L +S+
Sbjct: 184 TTIPQGLPPSLTELHLDGNKITKV------------DAASLKGL------NNLAKLGLSF 225

Query: 177 NELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--- 232
           N + ++ +      P L  +  ++N++ ++P      +   +  + L  N ++++ S   
Sbjct: 226 NSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA--DHKYIQVVYLHNNNISAIGSNDF 283

Query: 233 ----LIRQIASLKYLFLQSNSI---NILPQLFLQNSSKLKVLNISKN 272
                  + AS   + L SN +    I P  F +       + +   
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 74.7 bits (184), Expect = 9e-15
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 4/111 (3%)

Query: 166 PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
           P     LD+  N++  +          L T+   +N+I+++    F   L KL  L LS 
Sbjct: 51  PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAF-APLVKLERLYLSK 109

Query: 225 NRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275
           N+L  LP  +    +L+ L +  N I  + +      +++ V+ +  N LK
Sbjct: 110 NQLKELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 158

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 178 ELESLPDWIDTCP-----ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP- 231
           E+  +      CP      L  +  S   + ++P             L L  N++T +  
Sbjct: 14  EVPEIEPMGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPD----TALLDLQNNKITEIKD 69

Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
              + + +L  L L +N I+ +         KL+ L +SKN LK LP 
Sbjct: 70  GDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPE 117

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 34/235 (14%), Positives = 63/235 (26%), Gaps = 86/235 (36%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           L   R+   ++T  P  Q   P L  L    N+I+ +       +  LNN          
Sbjct: 173 LSYIRIADTNITTIP--QGLPPSLTELHLDGNKITKVD---AASLKGLNN---------- 217

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  L  + L  N                       I ++D
Sbjct: 218 -----------------------LAKLGLSFNS----------------------ISAVD 232

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
            G+L            L+ L LN + L+ V  G    +          +Q + +  N + 
Sbjct: 233 NGSLANTPH-------LRELHLNNNKLVKVPGGLADHKY---------IQVVYLHNNNIS 276

Query: 181 SLPD-------WIDTCPELETIFASHNRI--TQLPSQFFCRELGKLHTLQLSFNR 226
           ++         +         +    N +   ++    F R +     +QL   +
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF-RCVYVRAAVQLGNYK 330

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  105 bits (262), Expect = 5e-24
 Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 11/210 (5%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
           E    NL+   +   +      ++  +  + + I+S+  +  L  +  +  + N+L  + 
Sbjct: 22  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 81

Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
            + N  +L  +    NK++ L       +L+ L + +N +  +   +   P+LE+++  +
Sbjct: 82  PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN 140

Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
           N+IT +        L KL TL L  N+++ +  L   +  L+ L+L  N I+ L    L 
Sbjct: 141 NKITDITVL---SRLTKLDTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLR--ALA 194

Query: 260 NSSKLKVLNISKN-CLKMLPSLQKGFYLLN 288
               L VL +    CL    + Q    + N
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPN 224

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score =  100 bits (250), Expect = 2e-22
 Identities = 43/214 (20%), Positives = 89/214 (41%), Gaps = 13/214 (6%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL-- 140
           +      S  +K       +      ++ + S+        LN ++ I  + + +K++  
Sbjct: 1   MGETITVSTPIKQIFPDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG 60

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
           +    ++  +    NKL  +        L  L +  N+++ L   +    +L+++   HN
Sbjct: 61  IQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSS-LKDLKKLKSLSLEHN 119

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
            I+ +        L +L +L L  N++T +  L  ++  L  L L+ N I+ +    L  
Sbjct: 120 GISDING---LVHLPQLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIV--PLAG 173

Query: 261 SSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
            +KL+ L +SKN +  L +L     L N+  L L
Sbjct: 174 LTKLQNLYLSKNHISDLRALAG---LKNLDVLEL 204

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score =  101 bits (254), Expect = 6e-24
 Identities = 32/203 (15%), Positives = 80/203 (39%), Gaps = 10/203 (4%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
               +    + +  T+   +   +TTL      + +++ +  LN L  ++   NQ+  L 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79

Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
            + N + +  +    N L+++        ++ LD++  ++  +   +     L+ ++   
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDL 138

Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
           N+IT +        L  L  L +   +++ L  L   ++ L  L    N I+ +    L 
Sbjct: 139 NQITNISPL---AGLTNLQYLSIGNAQVSDLTPL-ANLSKLTTLKADDNKISDIS--PLA 192

Query: 260 NSSKLKVLNISKNCLKMLPSLQK 282
           +   L  +++  N +  +  L  
Sbjct: 193 SLPNLIEVHLKNNQISDVSPLAN 215

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.9 bits (239), Expect = 5e-22
 Identities = 49/275 (17%), Positives = 105/275 (38%), Gaps = 50/275 (18%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
             +    ++++T+    Q     +  LSA    ++ +       +  LNN          
Sbjct: 21  AIKIAAGKSNVTDTV-TQADLDGITTLSAFGTGVTTIE-----GVQYLNN---------- 64

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  L  + L+ NQ+     L N   +T L++S N ++++ 
Sbjct: 65  -----------------------LIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101

Query: 121 -LGALNRLESIKCSRNQLKTL-VLNG-SSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
            +  L  ++++  +  Q+  +  L G S+L  +    N++ ++        LQ+L I   
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161

Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
           ++  L   +    +L T+ A  N+I+ +        L  L  + L  N+++ +  L    
Sbjct: 162 QVSDLTP-LANLSKLTTLKADDNKISDISP---LASLPNLIEVHLKNNQISDVSPL-ANT 216

Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
           ++L  + L + +I   P  +  N   L V N+ K 
Sbjct: 217 SNLFIVTLTNQTITNQPVFYNNN---LVVPNVVKG 248

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 95.1 bits (237), Expect = 9e-22
 Identities = 38/207 (18%), Positives = 85/207 (41%), Gaps = 13/207 (6%)

Query: 91  SNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL--VLNGSSL 147
              +          N   +   ++++        L+ + ++      + T+  V   ++L
Sbjct: 6   PTAINVIFPDPALANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNL 65

Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPS 207
           I +   +N++  L       ++  L++S N L+++   I     ++T+  +  +IT +  
Sbjct: 66  IGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSA-IAGLQSIKTLDLTSTQITDVTP 124

Query: 208 QFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVL 267
                 L  L  L L  N++T++  L   + +L+YL + +  ++ L    L N SKL  L
Sbjct: 125 ---LAGLSNLQVLYLDLNQITNISPL-AGLTNLQYLSIGNAQVSDLT--PLANLSKLTTL 178

Query: 268 NISKNCLKMLPSLQKGFYLLNISQLRL 294
               N +  +  L     L N+ ++ L
Sbjct: 179 KADDNKISDISPLAS---LPNLIEVHL 202

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 24/165 (14%), Positives = 51/165 (30%), Gaps = 40/165 (24%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           LQ   +D N +T           L++LS    ++S L      P++ L+           
Sbjct: 131 LQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQVSDLT-----PLANLSK---------- 174

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  LT++    N++     L +  NL  + +  N I  + 
Sbjct: 175 -----------------------LTTLKADDNKISDISPLASLPNLIEVHLKNNQISDVS 211

Query: 121 -LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
            L   + L  +  +   +    +  ++ + V           ++P
Sbjct: 212 PLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAP 256

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (254), Expect = 3e-23
 Identities = 50/279 (17%), Positives = 97/279 (34%), Gaps = 62/279 (22%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
            +   +  N +     N       L+ L  ++N I  +    F     + L N       
Sbjct: 66  TRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAF-----NGLAN------- 113

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSEN 114
                                     L ++ L  N+L  TI          L  L +  N
Sbjct: 114 --------------------------LNTLELFDNRLT-TIPNGAFVYLSKLKELWLRNN 146

Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDI 174
            IES+   A NR+ S       L+ L L     +S I+     + L      + L++L++
Sbjct: 147 PIESIPSYAFNRIPS-------LRRLDLGELKRLSYIS-EGAFEGL------SNLRYLNL 192

Query: 175 SYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-L 233
           +   L  +P+      +L+ +  S N ++ +    F + L  L  L +  +++  +    
Sbjct: 193 AMCNLREIPNLTPL-IKLDELDLSGNHLSAIRPGSF-QGLMHLQKLWMIQSQIQVIERNA 250

Query: 234 IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
              + SL  + L  N++ +LP         L+ +++  N
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  100 bits (250), Expect = 9e-23
 Identities = 47/213 (22%), Positives = 93/213 (43%), Gaps = 23/213 (10%)

Query: 83  ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQL 137
               +NL  NQ++        +  +L  L +S N I ++++GA   L  L +++   N+L
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRL 124

Query: 138 KTL---VLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDIS-YNELESLPDWI- 186
            T+        S L  +   NN ++S+   P  A      L+ LD+     L  + +   
Sbjct: 125 TTIPNGAFVYLSKLKELWLRNNPIESI---PSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFL 245
           +    L  +  +   + ++P+      L KL  L LS N L+++     + +  L+ L++
Sbjct: 182 EGLSNLRYLNLAMCNLREIPN--LTP-LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238

Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
             + I ++ +    N   L  +N++ N L +LP
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLTLLP 271

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 73.2 bits (180), Expect = 5e-14
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 9/140 (6%)

Query: 145 SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
           +    VI     L+ +   P       + L++  N+++ +  +       LE +  S N 
Sbjct: 43  NQFSKVICVRKNLREV---PDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQN 260
           I  +    F   L  L+TL+L  NRLT++P+     ++ LK L+L++N I  +P      
Sbjct: 100 IRTIEIGAF-NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNR 158

Query: 261 SSKLKVLNISK-NCLKMLPS 279
              L+ L++ +   L  +  
Sbjct: 159 IPSLRRLDLGELKRLSYISE 178

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 63.6 bits (155), Expect = 6e-11
 Identities = 46/256 (17%), Positives = 76/256 (29%), Gaps = 82/256 (32%)

Query: 1   LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIA 57
           L    +  N LT  P    +F    +LK L    N I  +P +  + +            
Sbjct: 114 LNTLELFDNRLTTIP--NGAFVYLSKLKELWLRNNPIESIPSYAFNRIP----------- 160

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
                                         +LR       + LG    L+ +        
Sbjct: 161 ------------------------------SLRR------LDLGELKRLSYISE------ 178

Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
               GA   L +       L+ L L              L+ +       +L  LD+S N
Sbjct: 179 ----GAFEGLSN-------LRYLNLA----------MCNLREIPNLTPLIKLDELDLSGN 217

Query: 178 ELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIR 235
            L ++          L+ ++   ++I  +    F   L  L  + L+ N LT LP  L  
Sbjct: 218 HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAF-DNLQSLVEINLAHNNLTLLPHDLFT 276

Query: 236 QIASLKYLFLQSNSIN 251
            +  L+ + L  N  N
Sbjct: 277 PLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 49.7 bits (119), Expect = 2e-06
 Identities = 13/69 (18%), Positives = 28/69 (40%), Gaps = 2/69 (2%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
           C    +   +      L  +P  I    + + L L  N I I+     ++   L++L +S
Sbjct: 39  CSCSNQFSKVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLS 96

Query: 271 KNCLKMLPS 279
           +N ++ +  
Sbjct: 97  RNHIRTIEI 105

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  102 bits (257), Expect = 3e-23
 Identities = 43/211 (20%), Positives = 79/211 (37%), Gaps = 25/211 (11%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKC---SRNQLK 138
           +  +++    L   +  +      +  + V  + +  +       L+S++    S N + 
Sbjct: 288 IRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV 347

Query: 139 TLVLNGS-------SLISVIAGNNKLQSLIVSPRP----ARLQHLDISYNELESLPDWID 187
              L  S       SL +++   N L+S+  +         L  LDIS N    +PD   
Sbjct: 348 EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQ 407

Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247
              ++  +  S   I  + +         L  L +S N L S       +  L+ L++  
Sbjct: 408 WPEKMRFLNLSSTGIRVVKTCIPQ----TLEVLDVSNNNLDSFSL---FLPRLQELYISR 460

Query: 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           N +  LP   L     L V+ IS+N LK +P
Sbjct: 461 NKLKTLPDASL--FPVLLVMKISRNQLKSVP 489

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 96.3 bits (240), Expect = 3e-21
 Identities = 46/305 (15%), Positives = 98/305 (32%), Gaps = 32/305 (10%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
           L E  +    L  +      S   +  L+   +  + L       +S +  +        
Sbjct: 150 LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLA 209

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
           R +      D +    ++   +G + +    +  LK    +     +   D + N +   
Sbjct: 210 RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF 269

Query: 120 DLGALNRLESIKCSRN-QLKTLVLNGSSLISVIAG--------------NNKLQSLIVSP 164
           +    + +  +       ++ L +    L   ++               N+K+  +   P
Sbjct: 270 NPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLV---P 326

Query: 165 RPA-----RLQHLDISYNELESL----PDWIDTCPELETIFASHNRITQLPSQ-FFCREL 214
                    L+ LD+S N +              P L+T+  S N +  +         L
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 215 GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
             L +L +S N    +P   +    +++L L S  I ++     Q    L+VL++S N L
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQT---LEVLDVSNNNL 443

Query: 275 KMLPS 279
                
Sbjct: 444 DSFSL 448

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 92.5 bits (230), Expect = 6e-20
 Identities = 43/223 (19%), Positives = 85/223 (38%), Gaps = 28/223 (12%)

Query: 84  LTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
           + S++L  N++   G   L    NL  L +  + I +++  A   L S       L+ L 
Sbjct: 28  MKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGS-------LEHLD 80

Query: 142 LNGSSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESLPD--WIDTCPELETIFA 197
           L+          +N L SL  S     + L++L++  N  ++L           L+T+  
Sbjct: 81  LS----------DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRI 130

Query: 198 SH-NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQ 255
            +    +++    F   L  L+ L++    L +  S  ++ I  + +L L  +    L +
Sbjct: 131 GNVETFSEIRRIDF-AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189

Query: 256 LFLQNSSKLKVLNISKNCLKMLP--SLQKGFYLLNISQLRLPG 296
           +F    S ++ L +    L       L        + +L   G
Sbjct: 190 IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRG 232

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 78.2 bits (193), Expect = 2e-15
 Identities = 51/334 (15%), Positives = 102/334 (30%), Gaps = 73/334 (21%)

Query: 9   NDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDE 68
              T  P        +K L  + N+I+++       +    N                  
Sbjct: 15  RSFTSIP--SGLTAAMKSLDLSFNKITYIG---HGDLRACAN------------------ 51

Query: 69  DGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGALN 125
                          L  + L+S+++  TI      + G+L  LD+S+N + SL      
Sbjct: 52  ---------------LQVLILKSSRIN-TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFG 95

Query: 126 RLESIKC---SRNQLKTLVLNG-----SSLISV-IAGNNKLQSLIVSP--RPARLQHLDI 174
            L S+K      N  +TL +       ++L ++ I        +          L  L+I
Sbjct: 96  PLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEI 155

Query: 175 SYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL 233
               L +     + +  ++  +    +    L   F    L  +  L+L    L      
Sbjct: 156 KALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFA-DILSSVRYLELRDTNLARFQFS 214

Query: 234 IRQIA---------SLKYLFLQSNSINILPQLF--LQNSSKLKVLNISKNCLKMLPSLQK 282
              +          + +   L   S N L +L   +   S+++  + + N L      + 
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274

Query: 283 GFY-------LLNISQLRLPGFCNSDALIGIFDS 309
                      + I +L +P F     L  ++  
Sbjct: 275 DVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSL 308

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 39/208 (18%), Positives = 67/208 (32%), Gaps = 40/208 (19%)

Query: 1   LQEFRVDRNDLTEFPGNQDSF----PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGI 56
           L+   +  N + E      +     P L+ L  +QN +  +       +  L N      
Sbjct: 336 LEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQK-TGEILLTLKN------ 388

Query: 57  AEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG-TIILGNYGNLTTLDVSENS 115
                                      LTS+++  N              +  L++S   
Sbjct: 389 ---------------------------LTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTG 421

Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
           I  +       LE +  S N L +  L    L  +    NKL++L  +     L  + IS
Sbjct: 422 IRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDASLFPVLLVMKIS 481

Query: 176 YNELESLP-DWIDTCPELETIFASHNRI 202
            N+L+S+P    D    L+ I+   N  
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 73.2 bits (180), Expect = 8e-14
 Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 4/108 (3%)

Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
            D       S+P  +     ++++  S N+IT +      R    L  L L  +R+ ++ 
Sbjct: 10  CDGRSRSFTSIPSGL--TAAMKSLDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIE 66

Query: 232 -SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
                 + SL++L L  N ++ L   +    S LK LN+  N  + L 
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 68.6 bits (168), Expect = 2e-12
 Identities = 37/308 (12%), Positives = 88/308 (28%), Gaps = 61/308 (19%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPL------NNVIE 53
           LQ   +  + +    G+   S   L+ L  + N +S L      P+S L       N  +
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 54  HGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLD 110
                             +           L ++ + + +    I         +L  L+
Sbjct: 112 T-----------------LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELE 154

Query: 111 VSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQ 170
           +   S+ +    +L  +         +  L L+ S    ++     + S         ++
Sbjct: 155 IKALSLRNYQSQSLKSIRD-------IHHLTLHLSESAFLLEIFADILS--------SVR 199

Query: 171 HLDISYNELESLPDWIDTCPE-LETIFASHNRITQLPSQFFCR---------ELGKLHTL 220
           +L++    L           E    +     R + L  + F           EL ++   
Sbjct: 200 YLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259

Query: 221 QLSFNRLTSLPSLIRQI---------ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK 271
             + N L         +          +++ L +    +            K+K + +  
Sbjct: 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVEN 319

Query: 272 NCLKMLPS 279
           + + ++P 
Sbjct: 320 SKVFLVPC 327

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 25/93 (26%), Positives = 42/93 (45%), Gaps = 5/93 (5%)

Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQ 246
           +C             T +PS         + +L LSFN++T +    +R  A+L+ L L+
Sbjct: 3   SCDASGVCDGRSRSFTSIPSGLT----AAMKSLDLSFNKITYIGHGDLRACANLQVLILK 58

Query: 247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           S+ IN +      +   L+ L++S N L  L S
Sbjct: 59  SSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSS 91

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  101 bits (254), Expect = 3e-23
 Identities = 49/280 (17%), Positives = 91/280 (32%), Gaps = 64/280 (22%)

Query: 1   LQEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
            +   +  N++     +       L+ L   +N I  +    F     + L +       
Sbjct: 77  TRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF-----NGLAS------- 124

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII----LGNYGNLTTLDVSE 113
                                     L ++ L  N L  T+I          L  L +  
Sbjct: 125 --------------------------LNTLELFDNWL--TVIPSGAFEYLSKLRELWLRN 156

Query: 114 NSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLD 173
           N IES+   A NR+         L  L L     +  I+     + L        L++L+
Sbjct: 157 NPIESIPSYAFNRVP-------SLMRLDLGELKKLEYIS-EGAFEGL------FNLKYLN 202

Query: 174 ISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS- 232
           +    ++ +P+       LE +  S N   ++    F   L  L  L +  ++++ +   
Sbjct: 203 LGMCNIKDMPNLTPL-VGLEELEMSGNHFPEIRPGSF-HGLSSLKKLWVMNSQVSLIERN 260

Query: 233 LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
               +ASL  L L  N+++ LP         L  L++  N
Sbjct: 261 AFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 99.4 bits (248), Expect = 2e-22
 Identities = 45/213 (21%), Positives = 88/213 (41%), Gaps = 23/213 (10%)

Query: 83  ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQL 137
               +NL  N ++        +  +L  L +  NSI  +++GA   L  L +++   N L
Sbjct: 76  NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWL 135

Query: 138 KTL---VLNG-SSLISVIAGNNKLQSLIVSPRPA-----RLQHLDIS-YNELESLPDWI- 186
             +        S L  +   NN ++S+   P  A      L  LD+    +LE + +   
Sbjct: 136 TVIPSGAFEYLSKLRELWLRNNPIESI---PSYAFNRVPSLMRLDLGELKKLEYISEGAF 192

Query: 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFL 245
           +    L+ +      I  +P+      L  L  L++S N    +       ++SLK L++
Sbjct: 193 EGLFNLKYLNLGMCNIKDMPN--L-TPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWV 249

Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            ++ ++++ +      + L  LN++ N L  LP
Sbjct: 250 MNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 74.4 bits (183), Expect = 3e-14
 Identities = 32/140 (22%), Positives = 61/140 (43%), Gaps = 9/140 (6%)

Query: 145 SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNR 201
           +    V+     L  +   P+  P+  ++L++  N ++ +  D       LE +    N 
Sbjct: 54  NQFSKVVCTRRGLSEV---PQGIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS 110

Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQN 260
           I Q+    F   L  L+TL+L  N LT +PS     ++ L+ L+L++N I  +P      
Sbjct: 111 IRQIEVGAF-NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNR 169

Query: 261 SSKLKVLNISK-NCLKMLPS 279
              L  L++ +   L+ +  
Sbjct: 170 VPSLMRLDLGELKKLEYISE 189

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 60.9 bits (148), Expect = 5e-10
 Identities = 45/258 (17%), Positives = 77/258 (29%), Gaps = 86/258 (33%)

Query: 1   LQEFRVDRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHG 55
           L    +  N LT  P    +F    +L+ L    N I  +P   F     + + +     
Sbjct: 125 LNTLELFDNWLTVIP--SGAFEYLSKLRELWLRNNPIESIPSYAF-----NRVPS----- 172

Query: 56  IAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENS 115
                                       L  ++L           G    L  +  SE +
Sbjct: 173 ----------------------------LMRLDL-----------GELKKLEYI--SEGA 191

Query: 116 IESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDIS 175
            E L       L+ +      +K +                L  L        L+ L++S
Sbjct: 192 FEGLF-----NLKYLNLGMCNIKDM--------------PNLTPL------VGLEELEMS 226

Query: 176 YNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SL 233
            N    +          L+ ++  +++++ +    F   L  L  L L+ N L+SLP  L
Sbjct: 227 GNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAF-DGLASLVELNLAHNNLSSLPHDL 285

Query: 234 IRQIASLKYLFLQSNSIN 251
              +  L  L L  N  N
Sbjct: 286 FTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 56.7 bits (137), Expect = 9e-09
 Identities = 18/94 (19%), Positives = 36/94 (38%), Gaps = 6/94 (6%)

Query: 188 TC-PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFL 245
           +C  +   +  +   ++++P             L L  N +  + +   R +  L+ L L
Sbjct: 51  SCSNQFSKVVCTRRGLSEVPQGIPSN----TRYLNLMENNIQMIQADTFRHLHHLEVLQL 106

Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
             NSI  +        + L  L +  N L ++PS
Sbjct: 107 GRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPS 140

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 13/69 (18%), Positives = 32/69 (46%), Gaps = 2/69 (2%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
           C    +   +  +   L+ +P  I   ++ +YL L  N+I ++     ++   L+VL + 
Sbjct: 50  CSCSNQFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLG 107

Query: 271 KNCLKMLPS 279
           +N ++ +  
Sbjct: 108 RNSIRQIEV 116

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 41.3 bits (97), Expect = 7e-04
 Identities = 30/194 (15%), Positives = 53/194 (27%), Gaps = 72/194 (37%)

Query: 7   DRNDLTEFPGNQDSF---PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREED 63
           +   L      + +F     LK+L+     I  +P       +PL               
Sbjct: 180 ELKKLEYIS--EGAFEGLFNLKYLNLGMCNIKDMPNL-----TPLVG------------- 219

Query: 64  FEQDEDGIIVERREPEVKGELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDL 121
                               L  + +  N              +L  L V  + +  ++ 
Sbjct: 220 --------------------LEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIER 259

Query: 122 GALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL---IVSPRPARLQHLDISYN- 177
            A + L S       L  L L           +N L SL   + +P    L  L + +N 
Sbjct: 260 NAFDGLAS-------LVELNLA----------HNNLSSLPHDLFTPLRY-LVELHLHHNP 301

Query: 178 -----ELESLPDWI 186
                ++  L  W+
Sbjct: 302 WNCDCDILWLAWWL 315

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 96.7 bits (241), Expect = 2e-22
 Identities = 44/210 (20%), Positives = 90/210 (42%), Gaps = 11/210 (5%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
           E    NL+   +   +      ++  +  + + I+S+  +  L  +  +  + N+L  + 
Sbjct: 25  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
            + N  +L  +    NK++ L       +L+ L + +N +  +   +   P+LE+++  +
Sbjct: 85  PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING-LVHLPQLESLYLGN 143

Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
           N+IT +        L KL TL L  N+++ +  L   +  L+ L+L  N I+ L    L 
Sbjct: 144 NKITDITV---LSRLTKLDTLSLEDNQISDIVPL-AGLTKLQNLYLSKNHISDLR--ALA 197

Query: 260 NSSKLKVLNISKN-CLKMLPSLQKGFYLLN 288
               L VL +    CL    + Q    + N
Sbjct: 198 GLKNLDVLELFSQECLNKPINHQSNLVVPN 227

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 87.8 bits (218), Expect = 2e-19
 Identities = 42/209 (20%), Positives = 87/209 (41%), Gaps = 13/209 (6%)

Query: 89  LRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL--VLNGS 145
                +K       +      ++ + S+        LN ++ I  + + +K++  +    
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLP 68

Query: 146 SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQL 205
           ++  +    NKL  +        L  L +  N+++ L   +    +L+++   HN I+ +
Sbjct: 69  NVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLEHNGISDI 127

Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
                   L +L +L L  N++T +  L  ++  L  L L+ N I+ +    L   +KL+
Sbjct: 128 NG---LVHLPQLESLYLGNNKITDITVL-SRLTKLDTLSLEDNQISDIV--PLAGLTKLQ 181

Query: 266 VLNISKNCLKMLPSLQKGFYLLNISQLRL 294
            L +SKN +  L +L     L N+  L L
Sbjct: 182 NLYLSKNHISDLRALAG---LKNLDVLEL 207

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 66.2 bits (162), Expect = 3e-12
 Identities = 25/132 (18%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 151 IAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFF 210
           I     ++ +      A     ++    +       +    ++ I A+++ I  +     
Sbjct: 8   ITVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ---G 63

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
            + L  +  L L+ N+LT +  L   + +L +LFL  N +  L    L++  KLK L++ 
Sbjct: 64  IQYLPNVTKLFLNGNKLTDIKPL-ANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLSLE 120

Query: 271 KNCLKMLPSLQK 282
            N +  +  L  
Sbjct: 121 HNGISDINGLVH 132

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 95.0 bits (237), Expect = 6e-22
 Identities = 45/208 (21%), Positives = 91/208 (43%), Gaps = 22/208 (10%)

Query: 84  LTSVNLRSNQLKGTII----LGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQ 136
             +++L  N L    +      ++  L  LD+S   I++++ GA   L+ L ++  + N 
Sbjct: 30  TKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 137 LKTL---VLNG-SSLISVIAGNNKLQSLIVSP--RPARLQHLDISYNELESLP--DWIDT 188
           +++L     +G SSL  ++A    L SL   P      L+ L++++N ++S    ++   
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147

Query: 189 CPELETIFASHNRITQLPSQFFCRELGKL----HTLQLSFNRLTSLPSLIRQIASLKYLF 244
              LE +  S N+I  +        L ++     +L LS N +  +     +   LK L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELA 206

Query: 245 LQSNSINILPQLFLQNSSKLKVLNISKN 272
           L +N +  +P       + L+ + +  N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 77.7 bits (192), Expect = 5e-16
 Identities = 34/134 (25%), Positives = 54/134 (40%), Gaps = 12/134 (8%)

Query: 154 NNKLQSLIVSP----RPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQ 208
            N L+ L            LQ LD+S  E++++ D    +   L T+  + N I  L   
Sbjct: 37  FNPLRHL--GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 94

Query: 209 FFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQ--LFLQNSSKLK 265
            F   L  L  L      L SL +  I  + +LK L +  N I        F  N + L+
Sbjct: 95  AF-SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF-SNLTNLE 152

Query: 266 VLNISKNCLKMLPS 279
            L++S N ++ +  
Sbjct: 153 HLDLSSNKIQSIYC 166

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 29/116 (25%), Positives = 52/116 (44%), Gaps = 3/116 (2%)

Query: 166 PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
           P   ++LD+S+N L  L      + PEL+ +  S   I  +    + + L  L TL L+ 
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAY-QSLSHLSTLILTG 85

Query: 225 NRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           N + SL       ++SL+ L     ++  L    + +   LK LN++ N ++    
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 97.1 bits (242), Expect = 9e-22
 Identities = 59/300 (19%), Positives = 106/300 (35%), Gaps = 39/300 (13%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPR---LKFLSAAQNRISHL-PVFLRHPMSPLNNVIEHG- 55
           L+   + + +L     + + F     L+ L    N I  + P      M   + +     
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 56  -IAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLK-------GTIILGNY---G 104
            +    EED                     T + L S  L+       G    GN     
Sbjct: 165 KVKSICEEDLL------------NFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNT 212

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL---- 160
           ++TTLD+S N  +               +  ++++L+L+ S  +    G+   +      
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDA----IAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268

Query: 161 IVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHT 219
                 + ++  D+S +++ +L   +     +LE +  + N I ++    F   L  L  
Sbjct: 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAF-WGLTHLLK 327

Query: 220 LQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           L LS N L S+ S +   +  L+ L L  N I  L          LK L +  N LK +P
Sbjct: 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVP 387

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 92.9 bits (231), Expect = 3e-20
 Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 40/236 (16%)

Query: 84  LTSVNLRSNQLKGTIILGNY----GNLTTLDVSENSIESLDLGA----LNRLESIKCSRN 135
           L  + L    L G ++ GN+     +L  L + +N+I+ +   +    + R   +  + N
Sbjct: 105 LEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFN 164

Query: 136 QLKTL------VLNGSSLISVIAGNNKLQSL----------IVSPRPARLQHLDISYNEL 179
           ++K++         G     +   +  LQ +              +   +  LD+S N  
Sbjct: 165 KVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGF 224

Query: 180 ESLP--------------DWIDTCPELETIFASHNRITQLPS-QFFCRELGKLHTLQLSF 224
           +                   I +          H       +  F   E   + T  LS 
Sbjct: 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSK 284

Query: 225 NRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           +++ +L   +      L+ L L  N IN +        + L  LN+S+N L  + S
Sbjct: 285 SKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 80.2 bits (198), Expect = 3e-16
 Identities = 44/255 (17%), Positives = 95/255 (37%), Gaps = 35/255 (13%)

Query: 105 NLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG-----SSLISVIAGNNK 156
           ++  +D+S NSI  L+  +   L  L+ +K  +     ++ N      SSLI +    N+
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 157 LQSLIVSPRPA-------RLQHLDISYNELESL---PDWIDTCPELETIFASHNRITQLP 206
              L               L+ L ++   L+      ++      LE +    N I ++ 
Sbjct: 91  FLQL-----ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPSLI---RQIASLKYLFLQSNSINILPQLFLQNS-- 261
              F   + + H L L+FN++ S+        Q      L L S ++  + + +L     
Sbjct: 146 PASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC 205

Query: 262 ------SKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDI 315
                 + +  L++S N  K   + +  F  +  ++++     NS  +   F   +  D 
Sbjct: 206 GNPFKNTSITTLDLSGNGFKESMAKRF-FDAIAGTKIQSLILSNSYNMGSSFGHTNFKDP 264

Query: 316 ASTLVQSIPRILLEE 330
            +   + +    ++ 
Sbjct: 265 DNFTFKGLEASGVKT 279

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 64.8 bits (158), Expect = 3e-11
 Identities = 24/117 (20%), Positives = 52/117 (44%), Gaps = 4/117 (3%)

Query: 166 PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
           PA + ++D+S N +  L +       +L+ +         +      R L  L  L+L +
Sbjct: 29  PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNCLKMLP 278
           N+   L +     +A+L+ L L   +++  +L   F +  + L++L +  N +K + 
Sbjct: 89  NQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQ 145

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 98.4 bits (246), Expect = 1e-21
 Identities = 52/224 (23%), Positives = 91/224 (40%), Gaps = 15/224 (6%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLK--- 138
           L  + +  N++ G + +    NL  LDVS N+  +    LG  + L+ +  S N+L    
Sbjct: 180 LKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF 239

Query: 139 -TLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWIDT-CPELETI 195
              +   + L  +   +N+    I       LQ+L ++ N+    +PD++   C  L  +
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGL 299

Query: 196 FASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLP-SLIRQIASLKYLFLQSNSIN- 251
             S N     +P  F       L +L LS N  +  LP   + ++  LK L L  N  + 
Sbjct: 300 DLSGNHFYGAVPPFFG--SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSG 357

Query: 252 ILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRL 294
            LP+     S+ L  L++S N     +           + +L L
Sbjct: 358 ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 96.1 bits (240), Expect = 5e-21
 Identities = 49/200 (24%), Positives = 80/200 (40%), Gaps = 29/200 (14%)

Query: 84  LTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIES---LDLGALNRLESIKCSRNQL 137
           L  ++L  N+  G I   + G    LT LD+S N          G+ + LES+  S N  
Sbjct: 271 LQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNF 330

Query: 138 KTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWI-DTCPELETI 195
                +G   +  +    K++ L         + LD+S+NE    LP+ + +    L T+
Sbjct: 331 -----SGELPMDTLL---KMRGL---------KVLDLSFNEFSGELPESLTNLSASLLTL 373

Query: 196 FASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSIN-I 252
             S N  +  +           L  L L  N  T  +P  +   + L  L L  N ++  
Sbjct: 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433

Query: 253 LPQLFLQNSSKLKVLNISKN 272
           +P   L + SKL+ L +  N
Sbjct: 434 IPS-SLGSLSKLRDLKLWLN 452

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 93.4 bits (233), Expect = 4e-20
 Identities = 52/235 (22%), Positives = 83/235 (35%), Gaps = 51/235 (21%)

Query: 84  LTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSI------ESLDLGALNRLESIKCSR 134
           L  +N+ SN L             +L  LD+S NSI        +       L+ +  S 
Sbjct: 128 LKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISG 187

Query: 135 NQ------------LKTLVLNG-------------SSLISVIAGNNKLQSLIVSPRPA-- 167
           N+            L+ L ++              S+L  +    NKL            
Sbjct: 188 NKISGDVDVSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDF----SRAI 243

Query: 168 ----RLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQ 221
                L+ L+IS N+    +P        L+ +  + N+ T ++P          L  L 
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGA-CDTLTGLD 300

Query: 222 LSFNRLT-SLPSLIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNCL 274
           LS N    ++P      + L+ L L SN+ +  LP   L     LKVL++S N  
Sbjct: 301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF 355

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 83.8 bits (208), Expect = 5e-17
 Identities = 54/238 (22%), Positives = 90/238 (37%), Gaps = 28/238 (11%)

Query: 81  KGELTSVNLRSNQLKGTI--ILGNYG--NLTTLDVSENSIE---SLDLGALNRLESIKCS 133
              L +++L SN   G I   L       L  L +  N         L   + L S+  S
Sbjct: 367 SASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLS 426

Query: 134 RNQLK----TLVLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE-SL 182
            N L     + + + S L  +    N L+  I    P        L+ L + +N+L   +
Sbjct: 427 FNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI----PQELMYVKTLETLILDFNDLTGEI 482

Query: 183 PDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASL 240
           P  +  C  L  I  S+NR+T ++P       L  L  L+LS N  + ++P+ +    SL
Sbjct: 483 PSGLSNCTNLNWISLSNNRLTGEIPKWIG--RLENLAILKLSNNSFSGNIPAELGDCRSL 540

Query: 241 KYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYL-LNISQLRLPG 296
            +L L +N  N  +P    + S K+    I+      + +           + L   G
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQG 598

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 82.3 bits (204), Expect = 1e-16
 Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 42/241 (17%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE---SLDLGALNRLESIKCSRNQLK 138
           L  + L++N   G I   L N   L +L +S N +       LG+L++L  +K   N L+
Sbjct: 396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLE 455

Query: 139 ----TLVLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE-SLPDWID 187
                 ++   +L ++I   N L   I    P+       L  + +S N L   +P WI 
Sbjct: 456 GEIPQELMYVKTLETLILDFNDLTGEI----PSGLSNCTNLNWISLSNNRLTGEIPKWIG 511

Query: 188 TCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFL 245
               L  +  S+N  +  +P++    +   L  L L+ N    ++P+ + + +      +
Sbjct: 512 RLENLAILKLSNNSFSGNIPAELG--DCRSLIWLDLNTNLFNGTIPAAMFKQSGK----I 565

Query: 246 QSNSINILPQLFLQNSSKLKVLNISKN----------CLKMLPSLQKGFYLLNISQLRLP 295
            +N I     ++++N    K  + + N           L  L +        NI+     
Sbjct: 566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP----CNITSRVYG 621

Query: 296 G 296
           G
Sbjct: 622 G 622

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 79.6 bits (197), Expect = 9e-16
 Identities = 47/214 (21%), Positives = 86/214 (40%), Gaps = 29/214 (13%)

Query: 82  GELTSVNLRSNQLKGTII-----LGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSR 134
            ++TS++L S  L          L +   L +L +S + I            L S+  SR
Sbjct: 50  DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109

Query: 135 NQL------KTLVLNGSSLISVIAGNNKLQSLIVSP---RPARLQHLDISYNELE-SLPD 184
           N L       T + + S L  +   +N L          +   L+ LD+S N +  +   
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169

Query: 185 WIDT---CPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIAS 239
                  C EL+ +  S N+I+  +           L  L +S N  +  +P  +   ++
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVDVS----RCVNLEFLDVSSNNFSTGIPF-LGDCSA 224

Query: 240 LKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKN 272
           L++L +  N ++    +  +   ++LK+LNIS N
Sbjct: 225 LQHLDISGNKLSGDFSR-AISTCTELKLLNISSN 257

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 76.9 bits (190), Expect = 8e-15
 Identities = 38/208 (18%), Positives = 75/208 (36%), Gaps = 22/208 (10%)

Query: 83  ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE---SLDLGALNRLESIKCSRNQL 137
            L  + L +N   G I   LG+  +L  LD++ N         +   +   +      + 
Sbjct: 515 NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKR 574

Query: 138 KTLVLNGSSLISVIAGNNKLQSLIVSP----RPARLQHLDISYNELE-SLPDWIDTCPEL 192
              + N           N L+   +      R +     +I+            D    +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634

Query: 193 ETIFASHNRIT-QLPSQFFCRELGKLHTLQ---LSFNRLT-SLPSLIRQIASLKYLFLQS 247
             +  S+N ++  +P      E+G +  L    L  N ++ S+P  +  +  L  L L S
Sbjct: 635 MFLDMSYNMLSGYIPK-----EIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS 689

Query: 248 NSIN-ILPQLFLQNSSKLKVLNISKNCL 274
           N ++  +PQ  +   + L  +++S N L
Sbjct: 690 NKLDGRIPQ-AMSALTMLTEIDLSNNNL 716

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 41/248 (16%), Positives = 75/248 (30%), Gaps = 42/248 (16%)

Query: 1   LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNRIS-HLPVFLRHPMSPL-------NN- 50
           L    +  N LT E P        L  L  + N  S ++P  L      L       N  
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD-CRSLIWLDLNTNLF 550

Query: 51  --VIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNL 106
              I   + ++  +       G      + +   +         + +G     L      
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610

Query: 107 TTLDVSENSI---ESLDLGALNRLESIKCSRNQLKTLVLNGSSLI-SVIAGNNKLQSLIV 162
              +++        S        +  +  S N L     +G   I   I     +  L  
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNML-----SGY--IPKEIG---SMPYL-- 658

Query: 163 SPRPARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTL 220
                    L++ +N++  S+PD +     L  +  S N++  ++P       L  L  +
Sbjct: 659 -------FILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAM--SALTMLTEI 709

Query: 221 QLSFNRLT 228
            LS N L+
Sbjct: 710 DLSNNNLS 717

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 27/100 (27%), Positives = 42/100 (42%), Gaps = 4/100 (4%)

Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN--ILPQL 256
           +   + + S      L  L +L LS + +    S  +  ASL  L L  NS++  +    
Sbjct: 63  NVGFSAVSSSLL--SLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLT 120

Query: 257 FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
            L + S LK LN+S N L     +  G  L ++  L L  
Sbjct: 121 SLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 5e-05
 Identities = 29/137 (21%), Positives = 52/137 (37%), Gaps = 31/137 (22%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES---LDLGALNRLESIKCSRNQLK 138
               N+ S    G       N G++  LD+S N +      ++G++  L  +    N   
Sbjct: 610 RNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHND-- 667

Query: 139 TLVLNGS--SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWIDTCPELETI 195
              ++GS    +        L+          L  LD+S N+L+  +P  +     L  I
Sbjct: 668 ---ISGSIPDEVG------DLRG---------LNILDLSSNKLDGRIPQAMSALTMLTEI 709

Query: 196 FASHNRIT-QLPS--QF 209
             S+N ++  +P   QF
Sbjct: 710 DLSNNNLSGPIPEMGQF 726

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 93.9 bits (234), Expect = 1e-21
 Identities = 55/202 (27%), Positives = 95/202 (47%), Gaps = 13/202 (6%)

Query: 82  GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLK 138
               SV+  S +L   I      +   LD+  N + SL   A   L +L  +  + N+L+
Sbjct: 16  NNKNSVDCSSKKLT-AIPSNIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ 74

Query: 139 TL---VLNG-SSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESLPDWI-DTCPE 191
           TL   +     +L ++   +NKLQ+L   V  +   L  L +  N+L+SLP  + D+  +
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTK 134

Query: 192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSI 250
           L  +   +N +  LP   F  +L  L  L+L  N+L  +P     ++  LK L L +N +
Sbjct: 135 LTYLSLGYNELQSLPKGVF-DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL 193

Query: 251 NILPQLFLQNSSKLKVLNISKN 272
             +P+    +  KLK+L + +N
Sbjct: 194 KRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 73.9 bits (182), Expect = 8e-15
 Identities = 44/161 (27%), Positives = 76/161 (47%), Gaps = 15/161 (9%)

Query: 122 GALNRLESIKCS-RNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
            AL + +   CS  N   ++  +   L ++ +        I    PA  + LD+  N+L 
Sbjct: 2   EALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSN-------I----PADTKKLDLQSNKLS 50

Query: 181 SLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIA 238
           SLP        +L  ++ + N++  LP+  F +EL  L TL ++ N+L +LP  +  Q+ 
Sbjct: 51  SLPSKAFHRLTKLRLLYLNDNKLQTLPAGIF-KELKNLETLWVTDNKLQALPIGVFDQLV 109

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           +L  L L  N +  LP     + +KL  L++  N L+ LP 
Sbjct: 110 NLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPK 150

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 93.3 bits (232), Expect = 8e-21
 Identities = 36/207 (17%), Positives = 80/207 (38%), Gaps = 32/207 (15%)

Query: 83  ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
            + S++L +N++       L    NL  L ++ N I +++  + + L         L+ L
Sbjct: 53  AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSL-------GSLEHL 105

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPD--WIDTCPELE 193
            L+           N L +L             L  L++  N  ++L +        +L+
Sbjct: 106 DLS----------YNYLSNL---SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQ 152

Query: 194 TIFASHN-RITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSIN 251
            +   +    T++  + F   L  L  L++  + L S     ++ I ++ +L L      
Sbjct: 153 ILRVGNMDTFTKIQRKDFAG-LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI 211

Query: 252 ILPQLFLQNSSKLKVLNISKNCLKMLP 278
           +L ++F+  +S ++ L +    L    
Sbjct: 212 LLLEIFVDVTSSVECLELRDTDLDTFH 238

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 6e-18
 Identities = 40/235 (17%), Positives = 77/235 (32%), Gaps = 47/235 (20%)

Query: 84  LTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQL 137
           L ++ L SN +  TI      + G+L  LD+S N + +L       L+ L  +    N  
Sbjct: 78  LQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPY 136

Query: 138 KTLVLNG-----SSLISVIAGNNKLQSLI---VSPRPARLQHLDISYNELESLPD-WIDT 188
           KTL         + L  +  GN    + I          L+ L+I  ++L+S     + +
Sbjct: 137 KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS 196

Query: 189 CPELETIFASHNRITQLPSQFF-------------------------------CRELGKL 217
              +  +     +   L   F                                  +    
Sbjct: 197 IQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTF 256

Query: 218 HTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
             ++++   L  +  L+ QI+ L  L    N +  +P       + L+ + +  N
Sbjct: 257 RNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 69.0 bits (169), Expect = 9e-13
 Identities = 27/118 (22%), Positives = 51/118 (43%), Gaps = 5/118 (4%)

Query: 166 PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
              ++ LD+S N +  +    +  C  L+ +  + N I  +    F   LG L  L LS+
Sbjct: 51  TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSF-SSLGSLEHLDLSY 109

Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSI-NILPQLFLQNSSKLKVLNISKN-CLKMLPS 279
           N L++L S   + ++SL +L L  N    +       + +KL++L +        +  
Sbjct: 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 29/125 (23%), Positives = 54/125 (43%), Gaps = 4/125 (3%)

Query: 171 HLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL 230
               S   L S+P  +     ++++  S+NRIT + +    +    L  L L+ N + ++
Sbjct: 35  ICKGSSGSLNSIPSGLTE--AVKSLDLSNNRITYISNSDL-QRCVNLQALVLTSNGINTI 91

Query: 231 PS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNI 289
                  + SL++L L  N ++ L   + +  S L  LN+  N  K L       +L  +
Sbjct: 92  EEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKL 151

Query: 290 SQLRL 294
             LR+
Sbjct: 152 QILRV 156

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 5/93 (5%)

Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQ 246
           +C        S   +  +PS         + +L LS NR+T +  S +++  +L+ L L 
Sbjct: 29  SCDRNGICKGSSGSLNSIPSGLTEA----VKSLDLSNNRITYISNSDLQRCVNLQALVLT 84

Query: 247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           SN IN + +    +   L+ L++S N L  L S
Sbjct: 85  SNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSS 117

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.9 bits (229), Expect = 1e-20
 Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 43/234 (18%)

Query: 84  LTSVNLRSNQLK---GTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLK 138
                     LK     +          L++    +         L+ L+ +      L 
Sbjct: 58  PQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM 117

Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFAS 198
            L                            L+ L ++ N L +LP  I +   L  +   
Sbjct: 118 ELPDTMQQFAG-------------------LETLTLARNPLRALPASIASLNRLRELSIR 158

Query: 199 H-NRITQLPSQF-------FCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSI 250
               +T+LP            + L  L +L+L +  + SLP+ I  + +LK L ++++ +
Sbjct: 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPL 218

Query: 251 NILPQLFLQNSSKLKVLNISK-NCLKMLP-------SLQKGFYLLNISQLR-LP 295
           + L    + +  KL+ L++     L+  P        L++   L + S L  LP
Sbjct: 219 SALGP-AIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR-LILKDCSNLLTLP 270

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 91.2 bits (227), Expect = 3e-20
 Identities = 44/222 (19%), Positives = 81/222 (36%), Gaps = 35/222 (15%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSR-NQLK 138
           L  + + +  L   +   +  +  L TL ++ N + +L   + +LNRL  +      +L 
Sbjct: 106 LQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELT 164

Query: 139 TL------------VLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE 180
            L                 +L S+      ++SL     PA       L+ L I  + L 
Sbjct: 165 ELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSL-----PASIANLQNLKSLKIRNSPLS 219

Query: 181 SLPDWIDTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQLS-FNRLTSLPSLIRQIA 238
           +L   I   P+LE +       +   P  F       L  L L   + L +LP  I ++ 
Sbjct: 220 ALGPAIHHLPKLEELDLRGCTALRNYPPIFG--GRAPLKRLILKDCSNLLTLPLDIHRLT 277

Query: 239 SLKYLFLQSNS-INILPQLFLQNSSKLKVLNISKNCLKMLPS 279
            L+ L L+    ++ LP L +       ++ +  +    L  
Sbjct: 278 QLEKLDLRGCVNLSRLPSL-IAQLPANCIILVPPHLQAQLDQ 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 85.4 bits (212), Expect = 2e-18
 Identities = 31/190 (16%), Positives = 59/190 (31%), Gaps = 27/190 (14%)

Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVL-------------NGSSLISVIAGNNKLQSLI 161
             E+L       L       +Q +                 N ++          L++  
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATA 72

Query: 162 VSPRPAR---LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLH 218
                A       L++    L   PD       L+ +      + +LP          L 
Sbjct: 73  DLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQ--FAGLE 130

Query: 219 TLQLSFNRLTSLPSLIRQIASLKYLFLQS-NSINILPQLFLQNS--------SKLKVLNI 269
           TL L+ N L +LP+ I  +  L+ L +++   +  LP+                L+ L +
Sbjct: 131 TLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190

Query: 270 SKNCLKMLPS 279
               ++ LP+
Sbjct: 191 EWTGIRSLPA 200

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 83.8 bits (208), Expect = 8e-18
 Identities = 51/271 (18%), Positives = 82/271 (30%), Gaps = 74/271 (27%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
           LQ   +D   L E P     F  L+ L+ A+N +  LP  +      LN           
Sbjct: 106 LQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIAS----LNR---------- 151

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSN-----------QLKGTIILGNYGNLTTL 109
                                  L  +++R+                +       NL +L
Sbjct: 152 -----------------------LRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 110 DVSENSIESL--DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA 167
            +    I SL   +  L  L+S+K   + L  L      L                    
Sbjct: 189 RLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPK------------------ 230

Query: 168 RLQHLDISY-NELESLPDWIDTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQLSFN 225
            L+ LD+     L + P        L+ +     + +  LP       L +L  L L   
Sbjct: 231 -LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI--HRLTQLEKLDLRGC 287

Query: 226 -RLTSLPSLIRQIASLKYLFLQSNSINILPQ 255
             L+ LPSLI Q+ +   + +  +    L Q
Sbjct: 288 VNLSRLPSLIAQLPANCIILVPPHLQAQLDQ 318

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 88.9 bits (221), Expect = 5e-20
 Identities = 36/193 (18%), Positives = 71/193 (36%), Gaps = 12/193 (6%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL- 140
                NL    +   +       +   +   ++I+SL  +     L+ +  S NQ+  L 
Sbjct: 20  NAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS 79

Query: 141 -VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASH 199
            + + + L  +    N+L++L   P    L  L +  NEL      +     LE +   +
Sbjct: 80  PLKDLTKLEELSVNRNRLKNLNGIPSAC-LSRLFLDNNELRDTDS-LIHLKNLEILSIRN 137

Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQ 259
           N++  +        L KL  L L  N +T+   L  ++  + ++ L        P  +  
Sbjct: 138 NKLKSIVM---LGFLSKLEVLDLHGNEITNTGGL-TRLKKVNWIDLTGQKCVNEPVKYQP 193

Query: 260 NSSKLKVLNISKN 272
               L + N  K+
Sbjct: 194 E---LYITNTVKD 203

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 83.2 bits (206), Expect = 4e-18
 Identities = 36/204 (17%), Positives = 77/204 (37%), Gaps = 12/204 (5%)

Query: 89  LRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL--VLNGS 145
            R   +          N    ++ + S+  L     L+ +++     + +++L  +   +
Sbjct: 4   QRPTPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFT 63

Query: 146 SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQL 205
           +L  +   +N++  L       +L+ L ++ N L++L         L  +F  +N +   
Sbjct: 64  NLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLNG--IPSACLSRLFLDNNELRDT 121

Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLK 265
            S      L  L  L +  N+L S+  L   ++ L+ L L  N I       L    K+ 
Sbjct: 122 DS---LIHLKNLEILSIRNNKLKSIVML-GFLSKLEVLDLHGNEITNTG--GLTRLKKVN 175

Query: 266 VLNISKNCLKMLP-SLQKGFYLLN 288
            ++++       P   Q   Y+ N
Sbjct: 176 WIDLTGQKCVNEPVKYQPELYITN 199

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 74.3 bits (183), Expect = 5e-15
 Identities = 36/285 (12%), Positives = 81/285 (28%), Gaps = 64/285 (22%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
             +  + +  +T+   +Q     ++  +   + I  L       M    N          
Sbjct: 21  AVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-----GMQFFTN---------- 64

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
                                  L  ++L  NQ+     L +   L  L V+ N +++L+
Sbjct: 65  -----------------------LKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN 101

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE 180
                 L  +    N+L+            +     L+             L I  N+L+
Sbjct: 102 GIPSACLSRLFLDNNELRD--------TDSLIHLKNLEI------------LSIRNNKLK 141

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL 240
           S+   +    +LE +    N IT          L K++ + L+  +  + P   +    +
Sbjct: 142 SIVM-LGFLSKLEVLDLHGNEITNTGG---LTRLKKVNWIDLTGQKCVNEPVKYQPELYI 197

Query: 241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
               ++      +   ++ N        +          +   F 
Sbjct: 198 TNT-VKDPDGRWISPYYISNGGSYVDGCVLWELPVYTDEVSYKFS 241

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 87.6 bits (217), Expect = 6e-19
 Identities = 36/204 (17%), Positives = 76/204 (37%), Gaps = 22/204 (10%)

Query: 83  ELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSI-ESLDLGALNRLESIKCSRNQLK 138
               +     +L+  I       +G+L  +++S+N + E ++    + L        +L 
Sbjct: 31  NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNL-------PKLH 82

Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFA 197
            + +  ++ +  I      Q+L        LQ+L IS   ++ LPD       +   +  
Sbjct: 83  EIRIEKANNLLYIN-PEAFQNL------PNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 198 SHN-RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQ 255
             N  I  +    F     +   L L+ N +  + +         +     +N++  LP 
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPN 195

Query: 256 LFLQNSSKLKVLNISKNCLKMLPS 279
                +S   +L+IS+  +  LPS
Sbjct: 196 DVFHGASGPVILDISRTRIHSLPS 219

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 66.4 bits (162), Expect = 5e-12
 Identities = 25/111 (22%), Positives = 47/111 (42%), Gaps = 5/111 (4%)

Query: 166 PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQ-LPSQFFCRELGKLHTLQLS 223
           P     L     +L  +         +LE I  S N + + + +  F   L KLH +++ 
Sbjct: 29  PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVF-SNLPKLHEIRIE 87

Query: 224 -FNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
             N L  +     + + +L+YL + +  I  LP +   +S +  +L+I  N
Sbjct: 88  KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 31/196 (15%), Positives = 70/196 (35%), Gaps = 27/196 (13%)

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
           +       E+ +  +          ++    +L+ +                        
Sbjct: 10  SNRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVI------------QKGAFSGF---- 53

Query: 165 RPARLQHLDISYNE-LESLPDWI-DTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQ 221
               L+ ++IS N+ LE +   +    P+L  I     N +  +  + F + L  L  L 
Sbjct: 54  --GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAF-QNLPNLQYLL 110

Query: 222 LSFNRLTSLPSLI-RQIASLKYLFLQSN-SINILPQ-LFLQNSSKLKVLNISKNCLKMLP 278
           +S   +  LP +          L +Q N +I+ + +  F+  S +  +L ++KN ++ + 
Sbjct: 111 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH 170

Query: 279 SLQKGFYLLNISQLRL 294
           +    F    + +L L
Sbjct: 171 N--SAFNGTQLDELNL 184

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 40/269 (14%), Positives = 71/269 (26%), Gaps = 77/269 (28%)

Query: 9   NDLTEFPGNQ-DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQD 67
           N+L         + P L++L  +   I HLP   +                         
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL--------------------- 128

Query: 68  EDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRL 127
                          +   ++++ N                      +I +++  +   L
Sbjct: 129 ---------------QKVLLDIQDN---------------------INIHTIERNSFVGL 152

Query: 128 ESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWI 186
                   +   L LN + +  +         L         +      N LE LP D  
Sbjct: 153 ------SFESVILWLNKNGIQEIHNSAFNGTQL--------DELNLSDNNNLEELPNDVF 198

Query: 187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQ 246
                   +  S  RI  LPS      L KL         L  LP+L  ++ +L    L 
Sbjct: 199 HGASGPVILDISRTRIHSLPSYGL-ENLKKLRARST--YNLKKLPTL-EKLVALMEASLT 254

Query: 247 SNSINILPQLFLQNSSKLKVLNISKNCLK 275
             S       + +  S+L  +       +
Sbjct: 255 YPSHCCAFANWRRQISELHPICNKSILRQ 283

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.1 bits (213), Expect = 6e-18
 Identities = 37/208 (17%), Positives = 79/208 (37%), Gaps = 24/208 (11%)

Query: 83  ELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGALNRLESIK---CSRNQL 137
            L+   + S+      + I   + N+   + + +    + +   +++        S N L
Sbjct: 277 ALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLL 336

Query: 138 KTLVLNG----SSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI 186
              V       + L ++I   N+L+ L    + A        LQ LDIS N +       
Sbjct: 337 TDTVFENCGHLTELETLILQMNQLKEL---SKIAEMTTQMKSLQQLDISQNSVSYDEKKG 393

Query: 187 --DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
                  L ++  S N +T    +       ++  L L  N++ S+P  + ++ +L+ L 
Sbjct: 394 DCSWTKSLLSLNMSSNILTDTIFRCL---PPRIKVLDLHSNKIKSIPKQVVKLEALQELN 450

Query: 245 LQSNSINILPQLFLQNSSKLKVLNISKN 272
           + SN +  +P       + L+ + +  N
Sbjct: 451 VASNQLKSVPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 79.1 bits (195), Expect = 1e-15
 Identities = 43/286 (15%), Positives = 89/286 (31%), Gaps = 20/286 (6%)

Query: 3   EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISH--LPVFLRHPMSPLNNVIEHGIAEER 60
           +  +   +      + +        S      ++      L   +  + N+    I    
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD 120
           E++       I+ + +       LT  N+ +       IL    + T   V   SI ++ 
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT---VWYFSISNVK 258

Query: 121 LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNE 178
           L           S   LK L ++          ++        +    + +   + + + 
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVV-------SDVFGFPQSYIYEIFSNMNIKNFTVSG 311

Query: 179 LESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR-- 235
              +             +  S+N +T    +     L +L TL L  N+L  L  +    
Sbjct: 312 TRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMT 370

Query: 236 -QIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNCLKMLPS 279
            Q+ SL+ L +  NS++    +     +  L  LN+S N L     
Sbjct: 371 TQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF 416

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 72.2 bits (177), Expect = 1e-13
 Identities = 37/137 (27%), Positives = 56/137 (40%), Gaps = 10/137 (7%)

Query: 166 PARLQHLDISYNELESLPDW-IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
             +   L+IS N +  L    I +  +L  +  SHNRI  L    F     +L  L LS 
Sbjct: 20  SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKF-NQELEYLDLSH 78

Query: 225 NRLTSLPSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNCLK-----MLP 278
           N+L  +        +LK+L L  N+ + LP      N S+LK L +S   L+      + 
Sbjct: 79  NKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIA 136

Query: 279 SLQKGFYLLNISQLRLP 295
            L     LL + +    
Sbjct: 137 HLNISKVLLVLGETYGE 153

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 66.4 bits (162), Expect = 1e-11
 Identities = 42/237 (17%), Positives = 83/237 (35%), Gaps = 30/237 (12%)

Query: 83  ELTSVNLRSNQLK--GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
           + T +N+  N +    T  + +   L  L +S N I+ LD+              +L+ L
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFN-------QELEYL 74

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDW--IDTCPELETIFAS 198
            L+          +NKL  +        L+HLD+S+N  ++LP         +L+ +  S
Sbjct: 75  DLS----------HNKLVKIS-CHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLS 123

Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQL-- 256
              + +            L+  ++      +          L+    +S  I        
Sbjct: 124 TTHLEKSSVLPIA----HLNISKVLLVLGETYGEKE-DPEGLQDFNTESLHIVFPTNKEF 178

Query: 257 -FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDN 312
            F+ + S   V N+  + +K +    K  Y L+I          S+  +   ++  N
Sbjct: 179 HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWN 235

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.7 bits (142), Expect = 2e-09
 Identities = 44/325 (13%), Positives = 97/325 (29%), Gaps = 73/325 (22%)

Query: 1   LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIA 57
                + +N ++E    +  S  +L+ L  + NRI +L   VF  +              
Sbjct: 23  TTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQ------------- 69

Query: 58  EEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
                                    EL  ++L  N+L   I      NL  LD+S N+ +
Sbjct: 70  -------------------------ELEYLDLSHNKLV-KISCHPTVNLKHLDLSFNAFD 103

Query: 118 SLDLGA----LNRLESIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPRPARLQHL 172
           +L +      +++L+ +  S   L+   +   + L          ++      P  LQ  
Sbjct: 104 ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDF 163

Query: 173 DISYNELESLPD----WIDTCPELETIFASHNRITQLPSQFFCRELGK------------ 216
           +     +    +    +I             + I  +     C                 
Sbjct: 164 NTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLS 223

Query: 217 ---LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSS-----KLKVLN 268
              L+ ++ ++N    +  L+    ++ Y  + +  +         + S      L +  
Sbjct: 224 NLTLNNIETTWNSFIRILQLVWHT-TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQ 282

Query: 269 ISKNCLKMLPS-LQKGFYLLNISQL 292
           +  +      S + + F  +NI   
Sbjct: 283 VVSDVFGFPQSYIYEIFSNMNIKNF 307

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 58.0 bits (140), Expect = 5e-09
 Identities = 43/314 (13%), Positives = 102/314 (32%), Gaps = 23/314 (7%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPV-----------FLRHPMSPLN 49
           L+   +  N L +          LK L  + N    LP+           FL    + L 
Sbjct: 71  LEYLDLSHNKLVKISC--HPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE 128

Query: 50  NVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTII--LGNYGNLT 107
                 IA                E+ +PE   +  + +L            + +    T
Sbjct: 129 KSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKT 188

Query: 108 TLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA 167
             ++  ++I+ +             ++ Q    + N  +L ++    N    ++      
Sbjct: 189 VANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSN-LTLNNIETTWNSFIRILQLVWHT 247

Query: 168 RLQHLDISYNELESLPDWID---TCPELETIFASH--NRITQLPSQFFCRELGKLHTLQL 222
            + +  IS  +L+   D+ D   +   L+ +      + +   P  +       ++    
Sbjct: 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNF 307

Query: 223 SFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
           + +    +  L   +I+   +L   +N +         + ++L+ L +  N LK L  + 
Sbjct: 308 TVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIA 367

Query: 282 KGF-YLLNISQLRL 294
           +    + ++ QL +
Sbjct: 368 EMTTQMKSLQQLDI 381

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 53.3 bits (128), Expect = 1e-07
 Identities = 35/239 (14%), Positives = 79/239 (33%), Gaps = 22/239 (9%)

Query: 83  ELTSVNLRSNQLKGTIILGNY---GNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           +L  + +  N+++  + +  +     L  LD+S N +  +       L+ +  S N    
Sbjct: 46  KLRILIISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDA 104

Query: 140 LVLNG-----SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPE--L 192
           L +       S L  +      L+   V P    + HL+IS   L     + +      L
Sbjct: 105 LPICKEFGNMSQLKFLGLSTTHLEKSSVLP----IAHLNISKVLLVLGETYGEKEDPEGL 160

Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI 252
           +        I    ++ F   +  +    ++   L+++  ++       +L + +     
Sbjct: 161 QDFNTESLHIVFPTNKEF-HFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219

Query: 253 LPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYL--LNISQLRLPGFCNSDALIGIFDS 309
                L     L  +  + N    +  L     +   +IS ++L G  +         S
Sbjct: 220 PKLSNLT----LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTS 274

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 48.7 bits (116), Expect = 3e-06
 Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 5/83 (6%)

Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQL 256
           S N +  +P         K   L +S N ++ L  S I  ++ L+ L +  N I  L   
Sbjct: 8   SKNGLIHVPKDLS----QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDIS 63

Query: 257 FLQNSSKLKVLNISKNCLKMLPS 279
             + + +L+ L++S N L  +  
Sbjct: 64  VFKFNQELEYLDLSHNKLVKISC 86

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 16/61 (26%), Positives = 27/61 (44%), Gaps = 2/61 (3%)

Query: 219 TLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            +  S N L  +P  +        L +  N I+ L    + + SKL++L IS N ++ L 
Sbjct: 4   LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 279 S 279
            
Sbjct: 62  I 62

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 84.8 bits (209), Expect = 2e-17
 Identities = 50/294 (17%), Positives = 108/294 (36%), Gaps = 19/294 (6%)

Query: 14  FPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV 73
              ++            +NR SH+ +      S  + + +H           Q E  ++ 
Sbjct: 276 LMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLK 335

Query: 74  ERREPEVKGELTSVNLRSNQL------KGTIILGNYGNLTTLDVSENSIESLDLGALNRL 127
           +R E   +   T   L   +L           L +   L  L+          +  +  L
Sbjct: 336 DRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRAL 395

Query: 128 ESIKCSR------NQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELES 181
           + +   +      + LK +    ++ +  +     L++ ++    A ++ L +++ +L  
Sbjct: 396 DPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV 455

Query: 182 LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLK 241
           L   ++    +  +  SHNR+  LP       L  L  LQ S N L ++  +   +  L+
Sbjct: 456 LCH-LEQLLLVTHLDLSHNRLRALPPAL--AALRCLEVLQASDNALENVDGV-ANLPRLQ 511

Query: 242 YLFLQSNSINILPQL-FLQNSSKLKVLNISKNCLKMLPSLQK--GFYLLNISQL 292
            L L +N +     +  L +  +L +LN+  N L     +Q+     L ++S +
Sbjct: 512 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 75.2 bits (184), Expect = 2e-14
 Identities = 43/298 (14%), Positives = 90/298 (30%), Gaps = 13/298 (4%)

Query: 5   RVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDF 64
           R +      F        R+  L    +       +         + +          + 
Sbjct: 252 REEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLND 311

Query: 65  EQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD--LG 122
           +  +    V     + + E   +  R               L   ++S      L   L 
Sbjct: 312 QLPQHTFRVIWTGSDSQKECVLLKDRPECW--CRDSATDEQLFRCELSVEKSTVLQSELE 369

Query: 123 ALNRLESIK-CSRNQLKTLVL---NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           +   L+ ++  ++  L T++L       L+          +L            D+    
Sbjct: 370 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF 429

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
           L           ++  +  +H  +T L       +L  +  L LS NRL +LP  +  + 
Sbjct: 430 LLENSVLKMEYADVRVLHLAHKDLTVLCH---LEQLLLVTHLDLSHNRLRALPPALAALR 486

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
            L+ L    N++  +  +   N  +L+ L +  N L+   ++Q       +  L L G
Sbjct: 487 CLEVLQASDNALENVDGV--ANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQG 542

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 84.5 bits (208), Expect = 3e-17
 Identities = 73/440 (16%), Positives = 128/440 (29%), Gaps = 140/440 (31%)

Query: 6   VDR--NDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHG-------- 55
            DR  ND   F   + +  RL+     +  +  L         P  NV+  G        
Sbjct: 116 RDRLYNDNQVFA--KYNVSRLQPYLKLRQALLEL--------RPAKNVLIDGVLGSGKTW 165

Query: 56  IAEE--REEDFEQD-EDGI----IVERREPE------------VKGELT-----SVNLRS 91
           +A +       +   +  I    +     PE            +    T     S N++ 
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 92  N------QLKGTIILGNYGN-LTTLD-V-SENSIESLDLGALNRLESIKCSRNQLKTLVL 142
                  +L+  +    Y N L  L  V +  +  + +L          C     K L+ 
Sbjct: 226 RIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS---------C-----KILLT 271

Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFAS--HN 200
             +    V    + L +   +     L H  ++               E++++       
Sbjct: 272 --TRFKQVT---DFLSAATTTHIS--LDHHSMTLTP-----------DEVKSLLLKYLDC 313

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
           R   LP     RE+   +            P  +  IA         + +         N
Sbjct: 314 RPQDLP-----REVLTTN------------PRRLSIIAESI-----RDGLATWDNWKHVN 351

Query: 261 SSKLKVLNISKNCLKMLPS--LQKGFYLLNISQLRLPGFCNSDALI-----GIF----DS 309
             KL    I ++ L +L     +K F  L++       F    A I      +       
Sbjct: 352 CDKLT--TIIESSLNVLEPAEYRKMFDRLSV-------F-PPSAHIPTILLSLIWFDVIK 401

Query: 310 GDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHR-----YSLSAT 364
            D   + + L +     L+E++  + T S    Y  L    E + +LHR     Y++  T
Sbjct: 402 SDVMVVVNKLHK---YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT 458

Query: 365 LCHLSLHPVTHR-YML-HIA 382
                L P     Y   HI 
Sbjct: 459 FDSDDLIPPYLDQYFYSHIG 478

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 1e-04
 Identities = 62/478 (12%), Positives = 142/478 (29%), Gaps = 131/478 (27%)

Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQL----------PSQFFCRELGKLHTLQL 222
           +    +++ +P  I +  E++ I  S + ++              +   + + ++  L++
Sbjct: 32  NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV--LRI 89

Query: 223 SFNRLTSL-------PSLIRQ--IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC 273
           ++  L S        PS++ +  I     L+   N   +  +  +        L   +  
Sbjct: 90  NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY---NDNQVFAKYNVSRLQPYLKL---RQA 143

Query: 274 LKMLPSLQKGFYLLNISQLR-LPGF---------CNSDALIGIFDSG------DNGDIAS 317
           L     L+    +L    +  + G          C S  +    D         N +   
Sbjct: 144 LL---ELRPAKNVL----IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196

Query: 318 TLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSL------- 370
           T+++ + ++L +      + SD+     L  H  I+  L R   S    +  L       
Sbjct: 197 TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELRRLLKSKPYEN-CLLVLLNVQ 254

Query: 371 HP-------------VTHRYMLHIASVGEAKAI-LCRQAGSLTFTHAPTLS--------- 407
           +              +T R+      +  A    +     S+T T     S         
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCR 314

Query: 408 ----PPVPPQGSCPLSFPDPHVTEV--MLHEN----DHFLILANKSVSEPV---LAAKRI 454
               P      + P       ++ +   + +     D++  +    ++  +   L     
Sbjct: 315 PQDLPREVLTTN-PR-----RLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368

Query: 455 QDLAQSYGSEDNLSVL------------VLRFQGSEFDSRTRDAKLSSMRKLGVQDPECP 502
            +  + +   D LSV             ++ F   + D      KL     L  + P   
Sbjct: 369 AEYRKMF---DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHK-YSLVEKQP-KE 423

Query: 503 WTIE-YDRS-SPSGQSDQASSGHTAVMTDTIYNKMDKYNFGDRR---------SSLGY 549
            TI           + +   + H +++    YN    ++  D           S +G+
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDH--YNIPKTFDSDDLIPPYLDQYFYSHIGH 479

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 80.0 bits (198), Expect = 3e-17
 Identities = 40/216 (18%), Positives = 75/216 (34%), Gaps = 34/216 (15%)

Query: 78  PEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSEN-SIESLDLGALNRLESIKCS 133
           P +     ++ L    L+ TI      N  N++ + VS + +++ L+  +   L      
Sbjct: 27  PSLPPSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSK---- 81

Query: 134 RNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPD--WI 186
              +  + +              L  +      A      L+ L I    L+  PD   +
Sbjct: 82  ---VTHIEI---------RNTRNLTYI---DPDALKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 187 DTCPELETIFASHN-RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL 245
            +      +  + N  +T +P   F     +  TL+L  N  TS+         L  ++L
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYL 186

Query: 246 QSNSI--NILPQLFLQNSSKLKVLNISKNCLKMLPS 279
             N     I    F    S   +L++S+  +  LPS
Sbjct: 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPS 222

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 72.0 bits (177), Expect = 2e-14
 Identities = 31/199 (15%), Positives = 70/199 (35%), Gaps = 30/199 (15%)

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGN--NKLQSLIV 162
           +  TL + E  + ++   A + L         +  + ++    +  +  +    L  +  
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNL-------PNISRIYVSIDVTLQQLESHSFYNLSKV-- 82

Query: 163 SPRPARLQHLDISYN-ELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTL 220
                   H++I     L  +  D +   P L+ +   +  +   P             L
Sbjct: 83  -------THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFIL 135

Query: 221 QLSFN-RLTSLP--SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC-LKM 276
           +++ N  +TS+P  +          L L +N    +      N +KL  + ++KN  L +
Sbjct: 136 EITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAF-NGTKLDAVYLNKNKYLTV 194

Query: 277 LPS-----LQKGFYLLNIS 290
           +       +  G  LL++S
Sbjct: 195 IDKDAFGGVYSGPSLLDVS 213

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 23/129 (17%), Positives = 52/129 (40%), Gaps = 7/129 (5%)

Query: 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN-RL 227
            +   ++  +++ +P      P  +T+      +  +PS  F   L  +  + +S +  L
Sbjct: 13  EEDFRVTCKDIQRIPSLP---PSTQTLKLIETHLRTIPSHAF-SNLPNISRIYVSIDVTL 68

Query: 228 TSLPSLI-RQIASLKYLFLQSN-SINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFY 285
             L S     ++ + ++ +++  ++  +    L+    LK L I    LKM P L K + 
Sbjct: 69  QQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYS 128

Query: 286 LLNISQLRL 294
                 L +
Sbjct: 129 TDIFFILEI 137

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 80.3 bits (199), Expect = 1e-16
 Identities = 45/198 (22%), Positives = 68/198 (34%), Gaps = 31/198 (15%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES---LDLGALNRLESIKCSRNQLK 138
           L  + +    + G I   L     L TLD S N++       + +L  L  I    N++ 
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI- 161

Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWIDTCPELETIFA 197
               +G+  I    G+     L           + IS N L   +P        L  +  
Sbjct: 162 ----SGA--IPDSYGS--FSKL--------FTSMTISRNRLTGKIPPTFANL-NLAFVDL 204

Query: 198 SHNRIT-QLPSQFFCRELGKLHTLQLSFNRLT-SLPSLIRQIASLKYLFLQSNSIN-ILP 254
           S N +       F          + L+ N L   L  +     +L  L L++N I   LP
Sbjct: 205 SRNMLEGDASVLFG--SDKNTQKIHLAKNSLAFDLGKV-GLSKNLNGLDLRNNRIYGTLP 261

Query: 255 QLFLQNSSKLKVLNISKN 272
           Q  L     L  LN+S N
Sbjct: 262 Q-GLTQLKFLHSLNVSFN 278

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 78.7 bits (195), Expect = 3e-16
 Identities = 39/221 (17%), Positives = 76/221 (34%), Gaps = 46/221 (20%)

Query: 82  GELTSVNLRSNQLKGTII----LGNYGNLTTLDVS-ENSIE---SLDLGALNRLESIKCS 133
             + +++L    L         L N   L  L +   N++       +  L +L  +  +
Sbjct: 50  YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYIT 109

Query: 134 RNQLKTLVLNG---------SSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNE 178
                   ++G          +L+++    N L   +    P        L  +    N 
Sbjct: 110 HTN-----VSGAIPDFLSQIKTLVTLDFSYNALSGTL----PPSISSLPNLVGITFDGNR 160

Query: 179 LE-SLPDWIDTCPELETIFA-SHNRIT-QLPSQFFCRELGKLH--TLQLSFNRLT-SLPS 232
           +  ++PD   +  +L T    S NR+T ++P          L+   + LS N L      
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP-----TFANLNLAFVDLSRNMLEGDASV 215

Query: 233 LIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKN 272
           L     + + + L  NS+   L ++    S  L  L++  N
Sbjct: 216 LFGSDKNTQKIHLAKNSLAFDLGKVG--LSKNLNGLDLRNN 254

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 67.6 bits (166), Expect = 1e-12
 Identities = 49/230 (21%), Positives = 84/230 (36%), Gaps = 59/230 (25%)

Query: 100 LGNYGNLTTLDVSENSI----------------ESLDLGALNRL-----ESI-KCSRNQL 137
                 +  LD+S  ++                  L +G +N L      +I K ++  L
Sbjct: 46  DTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQ--L 103

Query: 138 KTLVLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE-SLPDWIDTCP 190
             L +           +  +   I    P        L  LD SYN L  +LP  I + P
Sbjct: 104 HYLYIT----------HTNVSGAI----PDFLSQIKTLVTLDFSYNALSGTLPPSISSLP 149

Query: 191 ELETIFASHNRIT-QLPSQFFCRELGKLHT-LQLSFNRLT-SLPSLIRQIASLKYLFLQS 247
            L  I    NRI+  +P  +      KL T + +S NRLT  +P     + +L ++ L  
Sbjct: 150 NLVGITFDGNRISGAIPDSYG--SFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSR 206

Query: 248 NSI--NILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRL 294
           N +  +        +    + ++++KN L   L  +       N++ L L
Sbjct: 207 NMLEGDASVLFG--SDKNTQKIHLAKNSLAFDLGKVGL---SKNLNGLDL 251

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 45.6 bits (109), Expect = 2e-05
 Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 19/111 (17%)

Query: 84  LTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE---SLDLGALNRLESIKCSRNQLK 138
            TS+ +  N+L G I     N  NL  +D+S N +E   S+  G+    + I  ++N L 
Sbjct: 176 FTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234

Query: 139 -TL--VLNGSSLISVIAGNNKLQSLIVSPRPA------RLQHLDISYNELE 180
             L  V    +L  +   NN++   +    P        L  L++S+N L 
Sbjct: 235 FDLGKVGLSKNLNGLDLRNNRIYGTL----PQGLTQLKFLHSLNVSFNNLC 281

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 79.9 bits (197), Expect = 1e-16
 Identities = 35/216 (16%), Positives = 70/216 (32%), Gaps = 29/216 (13%)

Query: 84  LTSVNLRSNQLKGT----IILGNYGNLTTLDVSENSIESLDLG-------ALNRLESIKC 132
           L  + L + ++ GT    ++     +L  L++   S  + D             L+ +  
Sbjct: 97  LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156

Query: 133 SRNQLKTLVLNGSSLISV----------IAGNNKLQSLIVSPRPARLQHLDISYNELESL 182
           ++            +               G   L S +   +   LQ L +    +E+ 
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 183 PDWIDTC----PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
                       +L+ +  SHN +        C    +L++L LSF  L  +P  +    
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA-- 274

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL 274
            L  L L  N ++  P        ++  L++  N  
Sbjct: 275 KLSVLDLSYNRLDRNP--SPDELPQVGNLSLKGNPF 308

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 73.8 bits (181), Expect = 1e-14
 Identities = 30/164 (18%), Positives = 62/164 (37%), Gaps = 24/164 (14%)

Query: 84  LTSVNLRSNQLKGTII--LGNYGNLTTLDVSENSI-------ESLDLGALNRLESIKCSR 134
           L  +++            +  +  L+TLD+S+N          +L       L+ +    
Sbjct: 151 LKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRN 210

Query: 135 NQLKTL-------VLNGSSLISVIAGNNKLQSLIVSPR---PARLQHLDISYNELESLPD 184
             ++T              L  +   +N L+    +P    P++L  L++S+  L+ +P 
Sbjct: 211 AGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK 270

Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
            +    +L  +  S+NR+ + P      EL ++  L L  N   
Sbjct: 271 GLP--AKLSVLDLSYNRLDRNP---SPDELPQVGNLSLKGNPFL 309

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 71.5 bits (175), Expect = 8e-14
 Identities = 48/241 (19%), Positives = 84/241 (34%), Gaps = 37/241 (15%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
           L  + +R+ ++   I+ G    L    + E ++E+L++        ++ +   L  L L 
Sbjct: 70  LKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLR 129

Query: 144 GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRI 202
             S  +  A   +LQ  +       L+ L I+     +   + +   P L T+  S N  
Sbjct: 130 NVSWATRDAWLAELQQWL----KPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPE 185

Query: 203 T---QLPSQFFCRELGKLHTLQLSFNRLTSL----PSLIRQIASLKYLFLQSNSI----- 250
                L S     +   L  L L    + +      +L      L+ L L  NS+     
Sbjct: 186 LGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 251 -----------------NILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
                              L Q+     +KL VL++S N L   PS  +   L  +  L 
Sbjct: 246 APSCDWPSQLNSLNLSFTGLKQVPKGLPAKLSVLDLSYNRLDRNPSPDE---LPQVGNLS 302

Query: 294 L 294
           L
Sbjct: 303 L 303

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 66.1 bits (161), Expect = 5e-12
 Identities = 39/224 (17%), Positives = 75/224 (33%), Gaps = 25/224 (11%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
           L  V+  ++  + T I+ +  +L  L V    I S  L    R+  I    + L+ L L 
Sbjct: 49  LKRVDTEADLGQFTDIIKS-LSLKRLTVRAARIPSRILFGALRVLGI----SGLQELTLE 103

Query: 144 GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTC-----PELETIFAS 198
              +             ++      L  L++      +   W+        P L+ +  +
Sbjct: 104 NLEV------TGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIA 157

Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-----RQIASLKYLFLQSNSINIL 253
                    +   R    L TL LS N       LI      +  +L+ L L++  +   
Sbjct: 158 QAHSLNFSCEQV-RVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216

Query: 254 PQLF---LQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
             +         +L+ L++S N L+         +   ++ L L
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNL 260

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.7 bits (103), Expect = 9e-05
 Identities = 25/175 (14%), Positives = 49/175 (28%), Gaps = 13/175 (7%)

Query: 132 CSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP---RPARLQHLDISYNEL--ESLPDWI 186
           C       L   G SL  ++   +    L       +   L+ L +    +    L   +
Sbjct: 30  CLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGAL 89

Query: 187 D--TCPELETIFASHNRITQL-PSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI-----A 238
                  L+ +   +  +T   P          L+ L L      +  + + ++      
Sbjct: 90  RVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKP 149

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
            LK L +            ++    L  L++S N       L      L    L+
Sbjct: 150 GLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQ 204

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.8 bits (202), Expect = 1e-16
 Identities = 33/179 (18%), Positives = 65/179 (36%), Gaps = 10/179 (5%)

Query: 104 GNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKTLVLNG----SSLISVIAGNNK 156
             +    +S +    + +      +    +  ++N     V  G      L ++I   N 
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 157 LQSL-IVSPRPARLQHLDISYNELESLPDWI--DTCPELETIFASHNRITQLPSQFFCRE 213
           L++   V+     +  L+     L SL       TC   E+I   +     L    F   
Sbjct: 389 LKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448

Query: 214 LGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
             K+  L L  NR+ S+P  +  + +L+ L + SN +  +P       + L+ + +  N
Sbjct: 449 PPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 76.1 bits (187), Expect = 9e-15
 Identities = 39/301 (12%), Positives = 77/301 (25%), Gaps = 26/301 (8%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKF--LSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
           L    +D        G  +S        L    +  S   V +   ++ L ++    I  
Sbjct: 171 LSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKL 230

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
             E           + R    +   L  +                  +  L++   +I  
Sbjct: 231 NDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIA------------GNNKLQSL--IVSP 164
                             ++ +                          +    +  +  P
Sbjct: 291 RIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP 350

Query: 165 RPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
            P+    L+ + N           T   L+T+    N +              + +L+  
Sbjct: 351 SPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALM--TKNMSSLETL 408

Query: 224 FNRLTSLPS-----LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
              L SL S           S+  L L SN   +   +F     K+KVL++  N +  +P
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSN--MLTGSVFRCLPPKVKVLDLHNNRIMSIP 466

Query: 279 S 279
            
Sbjct: 467 K 467

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 67.2 bits (164), Expect = 6e-12
 Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 33/243 (13%)

Query: 85  TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
           + V+  +  L   +          L +S+NSI  L +  ++ L       ++L+ L L+ 
Sbjct: 34  SMVDYSNRNLT-HVPKDLPPRTKALSLSQNSISELRMPDISFL-------SELRVLRLSH 85

Query: 145 SSLISVIAG--------------NNKLQSLIVSPRP-ARLQHLDISYNELESLPDW--ID 187
           + + S+                 +N+LQ++  S  P A L+HLD+S+N+ + LP      
Sbjct: 86  NRIRSLDFHVFLFNQDLEYLDVSHNRLQNI--SCCPMASLRHLDLSFNDFDVLPVCKEFG 143

Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247
              +L  +  S  +  QL              L L    +    +   QI +   L L  
Sbjct: 144 NLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVF 203

Query: 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLP------SLQKGFYLLNISQLRLPGFCNSD 301
           +  ++       + + L  L +S   L           L +      +  + L     + 
Sbjct: 204 HPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW 263

Query: 302 ALI 304
              
Sbjct: 264 KCS 266

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 61.4 bits (149), Expect = 4e-10
 Identities = 40/256 (15%), Positives = 86/256 (33%), Gaps = 33/256 (12%)

Query: 84  LTSVNLRSNQLK---GTIILGNYGNLTTLDVSENSIESLDLGALNRLE---------SIK 131
           L  ++L  N           GN   LT L +S      LDL  +  L          S  
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYH 182

Query: 132 CSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE--------SLP 183
               + ++L +  ++++ ++   N L S+ V+     L HL +S  +L         +  
Sbjct: 183 IKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFL 242

Query: 184 DWIDTCPELETIFASH-----NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA 238
             +   P L  +   H         +L   F+ R +  L+   L+               
Sbjct: 243 SELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSET 302

Query: 239 SLKYLFLQSNSINILPQLFLQNS-----SKLKVLNISKNCLKMLPSLQKGFYLLNISQLR 293
           +LK L ++     +   LF + +     +++ +  +S +    +  +       + + L 
Sbjct: 303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP-SPSSFTFLN 359

Query: 294 LPGFCNSDALIGIFDS 309
                 +D++     +
Sbjct: 360 FTQNVFTDSVFQGCST 375

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 56.8 bits (137), Expect = 1e-08
 Identities = 32/282 (11%), Positives = 70/282 (24%), Gaps = 37/282 (13%)

Query: 1   LQEFRVDRNDLTEFPGNQ--DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE 58
           L+   +  ND    P  +   +  +L FL  +  +   L +       P+ ++    I  
Sbjct: 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDL------LPVAHLHLSCILL 176

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES 118
           +      +  +              +  +    N L    +  +   L  L +S   +  
Sbjct: 177 DLVSYHIKGGE----TESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232

Query: 119 LDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
            +   L    S       L  + L                 L     P  +++L+I    
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTW-----KCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQI 237
           +    D  +                     +    L  L    +           +    
Sbjct: 288 ITERIDREE-------------------FTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           A +    L  +    +  +   + S    LN ++N       
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVF 370

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 52.2 bits (125), Expect = 3e-07
 Identities = 36/235 (15%), Positives = 70/235 (29%), Gaps = 42/235 (17%)

Query: 83  ELTSVNLRSNQLKGTIILG---NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           EL  + L  N+++ ++         +L  LDVS N ++++    +  L  +  S N    
Sbjct: 77  ELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHLDLSFNDFDV 135

Query: 140 LVLNG--SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFA 197
           L +     +L                     L  L +S  +   L         L  I  
Sbjct: 136 LPVCKEFGNLTK-------------------LTFLGLSAAKFRQLDLLPVAHLHLSCIL- 175

Query: 198 SHNRITQLPS-QFFCRELGKLHTLQLSFNRLTSLPSLIRQ-IASLKYLFLQSNSINILPQ 255
                  +   +    ++     L L F+  +     +   + +L +L L +  +N    
Sbjct: 176 LDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 256 LFLQNSSK------------LKVLNISKNCLKMLPSLQKGFYL--LNISQLRLPG 296
             L                 L+ +  +  C   L        +  LNI  L +  
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITE 290

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 45.2 bits (107), Expect = 4e-05
 Identities = 33/202 (16%), Positives = 59/202 (29%), Gaps = 51/202 (25%)

Query: 1   LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE 59
                  +N  T+       +  RL+ L   +N + +         +  +          
Sbjct: 355 FTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS---------L 405

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
              D   +        R       +  +NL SN L G++       +  LD+  N I S+
Sbjct: 406 ETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSI 465

Query: 120 DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
                                                LQ+         LQ L+++ N+L
Sbjct: 466 PKDVT-------------------------------HLQA---------LQELNVASNQL 485

Query: 180 ESLPD-WIDTCPELETIFASHN 200
           +S+PD   D    L+ I+   N
Sbjct: 486 KSVPDGVFDRLTSLQYIWLHDN 507

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 79.1 bits (195), Expect = 4e-16
 Identities = 43/242 (17%), Positives = 89/242 (36%), Gaps = 39/242 (16%)

Query: 83  ELTSVNLRSNQ---LKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
               ++L  N    L+         NL +L +S N +  +   A   +         L+ 
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-------NLRY 92

Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPELE 193
           L L+          +N L +L             L+ L +  N +  +     +   +L+
Sbjct: 93  LDLS----------SNHLHTL---DEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ 139

Query: 194 TIFASHNRITQLPSQFF--CRELGKLHTLQLSFNRLTSLP-SLIRQIASLK--YLFLQSN 248
            ++ S N+I++ P +      +L KL  L LS N+L  LP + ++++ +     L+L +N
Sbjct: 140 KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

Query: 249 SINILPQLF-----LQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDAL 303
            +    +L+      Q      V++  ++   M        + L+            +A 
Sbjct: 200 PLECDCKLYQLFSHWQYRQLSSVMDFQEDLYCMHSKKLHNIFSLDFFNCSEYKESAWEAH 259

Query: 304 IG 305
           +G
Sbjct: 260 LG 261

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 75.7 bits (186), Expect = 6e-15
 Identities = 28/111 (25%), Positives = 53/111 (47%), Gaps = 3/111 (2%)

Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
             L  S  +L ++P  +        +  SHN +++L +++    L  LH+L LS N L  
Sbjct: 21  NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNF 78

Query: 230 LPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           + S     + +L+YL L SN ++ L +    +   L+VL +  N + ++  
Sbjct: 79  ISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDR 129

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 74.5 bits (183), Expect = 1e-14
 Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 6/134 (4%)

Query: 166 PARLQHLDISYNELESLPDWIDTC--PELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
           P+    LD+S+N L  L           L ++  SHN +  + S+ F   +  L  L LS
Sbjct: 38  PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAF-VPVPNLRYLDLS 96

Query: 224 FNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS--L 280
            N L +L   +   + +L+ L L +N I ++ +   ++ ++L+ L +S+N +   P   +
Sbjct: 97  SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELI 156

Query: 281 QKGFYLLNISQLRL 294
           + G  L  +  L L
Sbjct: 157 KDGNKLPKLMLLDL 170

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 77.7 bits (192), Expect = 4e-16
 Identities = 40/175 (22%), Positives = 74/175 (42%), Gaps = 5/175 (2%)

Query: 108 TLDVSENSIESLDLGALNRLESIKCSRNQLKTL--VLNGSSLISVIAGNNKLQSLIVSPR 165
           T+ VS    +     A          +  +         +S+  +IA N+ ++S+     
Sbjct: 2   TITVSTPIKQIFPDDAFAETIKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQY 61

Query: 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
              +++L +  N+L  +         L  +  + N++  LP+  F  +L  L  L L  N
Sbjct: 62  LPNVRYLALGGNKLHDISAL-KELTNLTYLILTGNQLQSLPNGVF-DKLTNLKELVLVEN 119

Query: 226 RLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           +L SLP  +  ++ +L YL L  N +  LP+      + L  L++S N L+ LP 
Sbjct: 120 QLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPE 174

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 77.0 bits (190), Expect = 7e-16
 Identities = 46/171 (26%), Positives = 81/171 (47%), Gaps = 8/171 (4%)

Query: 85  TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTL-VL 142
              NL+   +   +      ++  +  + + I+S+  +  L  +  +    N+L  +  L
Sbjct: 22  IKANLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISAL 81

Query: 143 NG-SSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFAS 198
              ++L  +I   N+LQSL   V  +   L+ L +  N+L+SLPD + D    L  +  +
Sbjct: 82  KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLA 141

Query: 199 HNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSN 248
           HN++  LP   F + L  L  L LS+N+L SLP  +  ++  LK L L  N
Sbjct: 142 HNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 72.0 bits (177), Expect = 3e-14
 Identities = 47/181 (25%), Positives = 88/181 (48%), Gaps = 22/181 (12%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQLKT 139
            +  +   ++ +K    +    N+  L +  N +  +   A   L  L  +  + NQL++
Sbjct: 42  SIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS 99

Query: 140 L---VLNG-SSLISVIAGNNKLQSLI--VSPRPARLQHLDISYNELESLPDWI-DTCPEL 192
           L   V +  ++L  ++   N+LQSL   V  +   L +L++++N+L+SLP  + D    L
Sbjct: 100 LPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNL 159

Query: 193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-----SLIRQIASLKYLFLQS 247
             +  S+N++  LP   F + L +L  L+L  N+L S+P      L     SL+Y++L  
Sbjct: 160 TELDLSYNQLQSLPEGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRL----TSLQYIWLHD 214

Query: 248 N 248
           N
Sbjct: 215 N 215

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 72.8 bits (179), Expect = 9e-15
 Identities = 28/153 (18%), Positives = 62/153 (40%), Gaps = 32/153 (20%)

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
            +T + + +N+I+ +  GA +          +L+ + L+          NN++  L    
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPY-------KKLRRIDLS----------NNQISEL---- 71

Query: 165 RPA-------RLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGK 216
                      L  L +  N++  LP  + +    L+ +  + N+I  L    F ++L  
Sbjct: 72  -APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAF-QDLHN 129

Query: 217 LHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
           L+ L L  N+L ++       + +++ + L  N
Sbjct: 130 LNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.4 bits (173), Expect = 6e-14
 Identities = 36/132 (27%), Positives = 63/132 (47%), Gaps = 6/132 (4%)

Query: 166 PARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
           P  +  + +  N ++ +P        +L  I  S+N+I++L    F + L  L++L L  
Sbjct: 31  PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAF-QGLRSLNSLVLYG 89

Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKG 283
           N++T LP  L   + SL+ L L +N IN L     Q+   L +L++  N L+ +   +  
Sbjct: 90  NKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIA--KGT 147

Query: 284 F-YLLNISQLRL 294
           F  L  I  + L
Sbjct: 148 FSPLRAIQTMHL 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 70.1 bits (172), Expect = 7e-14
 Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 11/126 (8%)

Query: 154 NNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPS 207
            N ++ +   P  A     +L+ +D+S N++  L          L ++    N+IT+LP 
Sbjct: 41  QNTIKVI---PPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPK 97

Query: 208 QFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKV 266
             F   L  L  L L+ N++  L     + + +L  L L  N +  + +        ++ 
Sbjct: 98  SLF-EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQT 156

Query: 267 LNISKN 272
           +++++N
Sbjct: 157 MHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 68.1 bits (167), Expect = 4e-13
 Identities = 33/151 (21%), Positives = 50/151 (33%), Gaps = 33/151 (21%)

Query: 85  TSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
           T + L  N +K         Y  L  +D+S N I  L   A   L         L +LVL
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-------SLNSLVL 87

Query: 143 NGSSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI-DTCPELET 194
                       NK+  L     P         LQ L ++ N++  L          L  
Sbjct: 88  Y----------GNKITEL-----PKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNL 132

Query: 195 IFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
           +    N++  +    F   L  + T+ L+ N
Sbjct: 133 LSLYDNKLQTIAKGTFSP-LRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 30/127 (23%)

Query: 83  ELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           +L  ++L +NQ+   +         +L +L +  N I  L       L         L+ 
Sbjct: 57  KLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLF-------SLQL 108

Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPELE 193
           L+LN           NK+  L      A      L  L +  N+L+++          ++
Sbjct: 109 LLLN----------ANKINCL---RVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQ 155

Query: 194 TIFASHN 200
           T+  + N
Sbjct: 156 TMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.4 bits (95), Expect = 7e-04
 Identities = 36/205 (17%), Positives = 67/205 (32%), Gaps = 74/205 (36%)

Query: 2   QEFRVDRNDLTEFPGNQ-DSFPRLKFLSAAQNRISHLP--VFLRHPMSPLNNVIEHGIAE 58
            E R+++N +   P      + +L+ +  + N+IS L    F       L +        
Sbjct: 35  TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-----LRS-------- 81

Query: 59  EREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG--TIILGNYGNLTTLDVSENSI 116
                                    L S+ L  N++      +     +L  L ++ N I
Sbjct: 82  -------------------------LNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKI 116

Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQH 171
             L + A   L +       L  L L           +NKLQ++    +        +Q 
Sbjct: 117 NCLRVDAFQDLHN-------LNLLSLY----------DNKLQTI---AKGTFSPLRAIQT 156

Query: 172 LDISYN------ELESLPDWIDTCP 190
           + ++ N       L+ L D++ T P
Sbjct: 157 MHLAQNPFICDCHLKWLADYLHTNP 181

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 26/192 (13%), Positives = 65/192 (33%), Gaps = 26/192 (13%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
              +  L  +     I      +LT + ++  ++  L  +   + ++ +  +        
Sbjct: 24  AYLNGLLGQSST-ANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATN-- 80

Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHN 200
                  + I+G + L+             L I   ++ S     +     L  +  SH+
Sbjct: 81  ------YNPISGLSNLE------------RLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
                        L K++++ LS+N   +    ++ +  LK L +Q + ++      +++
Sbjct: 123 AHDDSILTKI-NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYR--GIED 179

Query: 261 SSKLKVLNISKN 272
             KL  L     
Sbjct: 180 FPKLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 70.8 bits (174), Expect = 3e-14
 Identities = 33/171 (19%), Positives = 68/171 (39%), Gaps = 25/171 (14%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVL 142
           LT + L +  +     +    N+  L ++     + + +  L+ LE ++     +     
Sbjct: 46  LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVT---- 101

Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE-SLPDWIDTCPELETIFASHN- 200
             S  I  ++G   L              LDIS++  + S+   I+T P++ +I  S+N 
Sbjct: 102 --SDKIPNLSGLTSLTL------------LDISHSAHDDSILTKINTLPKVNSIDLSYNG 147

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSIN 251
            IT +      + L +L +L + F+ +     +      L  L+  S +I 
Sbjct: 148 AITDIMP---LKTLPELKSLNIQFDGVHDYRGI-EDFPKLNQLYAFSQTIG 194

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 24/153 (15%), Positives = 59/153 (38%), Gaps = 17/153 (11%)

Query: 146 SLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQL 205
           + ++ + G +   ++  + +   L ++ ++   +  L   I+    ++ +  ++   T  
Sbjct: 24  AYLNGLLGQSSTANITEA-QMNSLTYITLANINVTDLTG-IEYAHNIKDLTINNIHATNY 81

Query: 206 PSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKL 264
                   L  L  L++    +TS     +  + SL  L +  ++ +      +    K+
Sbjct: 82  N---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKV 138

Query: 265 KVLNISKNC-------LKMLPSLQKGFYLLNIS 290
             +++S N        LK LP L+     LNI 
Sbjct: 139 NSIDLSYNGAITDIMPLKTLPELKS----LNIQ 167

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 67.8 bits (166), Expect = 5e-13
 Identities = 28/116 (24%), Positives = 52/116 (44%), Gaps = 4/116 (3%)

Query: 166 PARLQHLDISYNELESLP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
           P     L ++ NE   L         P+L  I  S+N+IT +    F      ++ + L+
Sbjct: 31  PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAF-EGASGVNEILLT 89

Query: 224 FNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            NRL ++   + + + SLK L L+SN I  +        S +++L++  N +  + 
Sbjct: 90  SNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVA 145

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.4 bits (160), Expect = 3e-12
 Identities = 27/124 (21%), Positives = 54/124 (43%), Gaps = 6/124 (4%)

Query: 154 NNKLQSLIVS---PRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQF 209
           NN+   L  +    +  +L+ ++ S N++  + +   +    +  I  + NR+  +  + 
Sbjct: 41  NNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKM 100

Query: 210 FCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLN 268
           F + L  L TL L  NR+T + +     ++S++ L L  N I  +          L  LN
Sbjct: 101 F-KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLN 159

Query: 269 ISKN 272
           +  N
Sbjct: 160 LLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 65.1 bits (159), Expect = 4e-12
 Identities = 27/152 (17%), Positives = 53/152 (34%), Gaps = 34/152 (22%)

Query: 85  TSVNLRSNQ---LKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
             + L +N+   L+ T I      L  ++ S N I  ++ GA             +  ++
Sbjct: 35  AELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-------GVNEIL 87

Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI-DTCPELE 193
           L           +N+L+++       +       L+ L +  N +  + +        + 
Sbjct: 88  LT----------SNRLENV-----QHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVR 132

Query: 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
            +    N+IT +    F   L  L TL L  N
Sbjct: 133 LLSLYDNQITTVAPGAFDT-LHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 60.4 bits (147), Expect = 1e-10
 Identities = 19/106 (17%), Positives = 43/106 (40%), Gaps = 3/106 (2%)

Query: 175 SYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI 234
           S  +L  +P+ I        +  ++N  T L +    ++L +L  +  S N++T +    
Sbjct: 19  SNQKLNKIPEHIPQ--YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGA 76

Query: 235 -RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
               + +  + L SN +  +     +    LK L +  N +  + +
Sbjct: 77  FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGN 122

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 50.0 bits (120), Expect = 4e-07
 Identities = 22/127 (17%), Positives = 48/127 (37%), Gaps = 30/127 (23%)

Query: 83  ELTSVNLRSNQLKGTIILG---NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT 139
           +L  +N  +N++   I  G       +  + ++ N +E++       LE        LKT
Sbjct: 58  QLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLE-------SLKT 109

Query: 140 LVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPELE 193
           L+L           +N++  +      +      ++ L +  N++ ++     DT   L 
Sbjct: 110 LMLR----------SNRITCV---GNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLS 156

Query: 194 TIFASHN 200
           T+    N
Sbjct: 157 TLNLLAN 163

>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens} Length = 274

 Score = 67.4 bits (165), Expect = 1e-12
 Identities = 40/242 (16%), Positives = 76/242 (31%), Gaps = 65/242 (26%)

Query: 294 LPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEERTVKETASDYMKYTMLTAHREI 352
                +      ++D G  G  A+    + + + +++    ++     +    L   +  
Sbjct: 28  FAQLTDEVLYFAVYD-GHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAF 86

Query: 353 KDSLHRYSLSAT-------LCHLSLHPVTHRYMLHIASVGEAKAILCR--QAGSLTFTHA 403
                  + +            L    +     L +ASVG+++AILCR  +   LT  H 
Sbjct: 87  SSHARLSADATLLTSGTTATVAL----LRDGIELVVASVGDSRAILCRKGKPMKLTIDHT 142

Query: 404 PTL----------------SPPVPP--QGS--------------CPLSFPDPHVTEVML- 430
           P                  +    P   G                 +   +P    + L 
Sbjct: 143 PERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVI-AEPETKRIKLH 201

Query: 431 HENDHFLILA---------N-------KSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRF 474
           H +D FL+L          +           +P  AA  + + A  YG+EDN + +V+ F
Sbjct: 202 HADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPF 261

Query: 475 QG 476
             
Sbjct: 262 GA 263

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 67.0 bits (164), Expect = 1e-12
 Identities = 45/170 (26%), Positives = 76/170 (44%), Gaps = 24/170 (14%)

Query: 85  TSVNLRSNQLKG--TIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
             ++L+S  L             LT L++  N +++L  G  + L        +L TL L
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL-------TELGTLGL 90

Query: 143 NGSSLISVIAGNNKLQSL--IVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASH 199
                      NN+L SL   V     +L  L +  N+L+SLP  + D   +L+ +  + 
Sbjct: 91  A----------NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNT 140

Query: 200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSN 248
           N++  +P+  F  +L  L TL LS N+L S+P     ++  L+ + L  N
Sbjct: 141 NQLQSIPAGAF-DKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 61.2 bits (149), Expect = 1e-10
 Identities = 45/150 (30%), Positives = 70/150 (46%), Gaps = 15/150 (10%)

Query: 132 CSRNQLKTLV-LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTC 189
           C+ N+ K  V   G SL SV +G       I    PA  + LD+    L +L D      
Sbjct: 10  CTCNEGKKEVDCQGKSLDSVPSG-------I----PADTEKLDLQSTGLATLSDATFRGL 58

Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI-RQIASLKYLFLQSN 248
            +L  +   +N++  L +  F  +L +L TL L+ N+L SLP  +   +  L  L+L  N
Sbjct: 59  TKLTWLNLDYNQLQTLSAGVF-DDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117

Query: 249 SINILPQLFLQNSSKLKVLNISKNCLKMLP 278
            +  LP       +KLK L ++ N L+ +P
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIP 147

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 3e-08
 Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 8/110 (7%)

Query: 173 DISYNELESLPDWI--DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL 230
           D     L+S+P  I  DT    E +      +  L    F R L KL  L L +N+L +L
Sbjct: 20  DCQGKSLDSVPSGIPADT----EKLDLQSTGLATLSDATF-RGLTKLTWLNLDYNQLQTL 74

Query: 231 PSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
            + +   +  L  L L +N +  LP     + ++L  L +  N LK LPS
Sbjct: 75  SAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPS 124

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 39/128 (30%), Positives = 57/128 (44%), Gaps = 32/128 (25%)

Query: 83  ELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLK 138
           EL ++ L +NQL     G  +  +   L  L +  N ++SL  G  +RL        +LK
Sbjct: 84  ELGTLGLANNQLASLPLG--VFDHLTQLDKLYLGGNQLKSLPSGVFDRL-------TKLK 134

Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPRPA-----RLQHLDISYNELESLPDWI-DTCPEL 192
            L LN           N+LQS+   P  A      LQ L +S N+L+S+P    D   +L
Sbjct: 135 ELRLN----------TNQLQSI---PAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKL 181

Query: 193 ETIFASHN 200
           +TI    N
Sbjct: 182 QTITLFGN 189

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 65.9 bits (161), Expect = 1e-12
 Identities = 45/194 (23%), Positives = 69/194 (35%), Gaps = 30/194 (15%)

Query: 68  EDGI-IVERREPEVKGELTSVNL--RSNQLKG-TIILGNYGNLTTLDVSENSIESLD-LG 122
           +D I I E R+  V  E   V L      ++     L        L +S N+IE +  L 
Sbjct: 8   KDAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLS 67

Query: 123 ALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL 182
            +  L  +   RN            I  I   + +           L+ L ISYN++ SL
Sbjct: 68  GMENLRILSLGRNL-----------IKKIENLDAV--------ADTLEELWISYNQIASL 108

Query: 183 PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKY 242
              I+    L  ++ S+N+IT          L KL  L L+ N L +        +  + 
Sbjct: 109 SG-IEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRI 167

Query: 243 LFLQSNSINILPQL 256
                  +  LP L
Sbjct: 168 EV-----VKRLPNL 176

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 29/150 (19%), Positives = 54/150 (36%), Gaps = 10/150 (6%)

Query: 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLP 206
            I +      + +       A    L      +E +   + T    + +  S N I ++ 
Sbjct: 10  AIRIFEERKSVVAT-----EAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKIS 64

Query: 207 SQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKV 266
           S      +  L  L L  N +  + +L     +L+ L++  N I  L    ++    L+V
Sbjct: 65  S---LSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG--IEKLVNLRV 119

Query: 267 LNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
           L +S N +     + K   L  +  L L G
Sbjct: 120 LYMSNNKITNWGEIDKLAALDKLEDLLLAG 149

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 61.6 bits (150), Expect = 3e-11
 Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 31/177 (17%)

Query: 109 LDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPAR 168
           L      IE +D   L+ L++        K L L  ++ I  I+    L  +        
Sbjct: 30  LHGMIPPIEKMDAT-LSTLKA-------CKHLAL-STNNIEKISS---LSGME------N 71

Query: 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
           L+ L +  N ++ + +       LE ++ S+N+I  L       +L  L  L +S N++T
Sbjct: 72  LRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG---IEKLVNLRVLYMSNNKIT 128

Query: 229 SLPSL--IRQIASLKYLFLQSNSI-NILPQLFLQNSSKLKVLNISKNCLKMLPSLQK 282
           +   +  +  +  L+ L L  N + N   +    +  +++V       +K LP+L+K
Sbjct: 129 NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEV-------VKRLPNLKK 178

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 64.3 bits (157), Expect = 3e-12
 Identities = 30/130 (23%), Positives = 54/130 (41%), Gaps = 16/130 (12%)

Query: 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
             R + LD+   ++  + +   T  + + I  S N I +L   F    L +L TL ++ N
Sbjct: 18  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPL--LRRLKTLLVNNN 74

Query: 226 RLTSL-PSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKN----------- 272
           R+  +   L + +  L  L L +NS+  L  L  L +   L  L I +N           
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 134

Query: 273 CLKMLPSLQK 282
            +  +P ++ 
Sbjct: 135 VIYKVPQVRV 144

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 63.5 bits (155), Expect = 5e-12
 Identities = 26/162 (16%), Positives = 62/162 (38%), Gaps = 23/162 (14%)

Query: 87  VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSS 146
           V L +  ++      N      LD+    I          +E++  + +Q   +  +   
Sbjct: 2   VKLTAELIEQAAQYTNAVRDRELDLRGYKIP--------VIENLGATLDQFDAIDFS--- 50

Query: 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQL 205
                  +N+++ L   P   RL+ L ++ N +  + + +    P+L  +  ++N + +L
Sbjct: 51  -------DNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 103

Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLPS----LIRQIASLKYL 243
                   L  L  L +  N +T+       +I ++  ++ L
Sbjct: 104 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 145

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 4e-08
 Identities = 20/125 (16%), Positives = 42/125 (33%), Gaps = 4/125 (3%)

Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP 231
           + ++   +E              +     +I  +  +     L +   +  S N +  L 
Sbjct: 2   VKLTAELIEQAAQ-YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDNEIRKLD 58

Query: 232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQ 291
                +  LK L + +N I  + +   Q    L  L ++ N L  L  L     L +++ 
Sbjct: 59  GF-PLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 117

Query: 292 LRLPG 296
           L +  
Sbjct: 118 LCILR 122

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 66.9 bits (164), Expect = 5e-12
 Identities = 40/242 (16%), Positives = 76/242 (31%), Gaps = 54/242 (22%)

Query: 84  LTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
           L ++ L S  +       L     +  +L  L +  N +   D+G       +    ++L
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLG--DVGMAELCPGLLHPSSRL 258

Query: 138 KTLVLNG--------SSLISVIAGNNKLQSLIVS------------------PRPARLQH 171
           +TL +            L  V+     L+ L ++                  P    L+ 
Sbjct: 259 RTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ-LES 317

Query: 172 LDISYNEL-----ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG----KLHTLQL 222
           L +                +     L  +  S+NR+     +  C+ LG     L  L L
Sbjct: 318 LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWL 377

Query: 223 SFNRLT-----SLPSLIRQIASLKYLFLQSNSI-----NILPQLFLQNSSKLKVLNISKN 272
           +   ++     SL + +    SL+ L L +N +       L +   Q    L+ L +   
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDI 437

Query: 273 CL 274
             
Sbjct: 438 YW 439

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 65.8 bits (161), Expect = 1e-11
 Identities = 42/241 (17%), Positives = 78/241 (32%), Gaps = 52/241 (21%)

Query: 84  LTSVNLRSNQLKGT------IILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
           +  ++L++  L G         L     L  L +S+N +   D G     E +   + +L
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG--DAGLQLLCEGLLDPQCRL 144

Query: 138 KTLVLNG--------SSLISVIAGNNKLQSLIVS-----------------PRPARLQHL 172
           + L L            L SV+      + L VS                   P +L+ L
Sbjct: 145 EKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEAL 204

Query: 173 DISYNEL-----ESLPDWIDTCPELETIFASHNRIT----QLPSQFFCRELGKLHTLQLS 223
            +    +       L   + +   L  +    N++                 +L TL + 
Sbjct: 205 KLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264

Query: 224 FNRLTS-----LPSLIRQIASLKYLFLQSNSI-----NILPQLFLQNSSKLKVLNISKNC 273
              +T+     L  ++R   SLK L L  N +      +L +  L+   +L+ L +    
Sbjct: 265 ECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCS 324

Query: 274 L 274
            
Sbjct: 325 F 325

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 63.4 bits (155), Expect = 8e-11
 Identities = 50/242 (20%), Positives = 85/242 (35%), Gaps = 54/242 (22%)

Query: 84  LTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
              V L    L       +         L  L++  N +   D+G    L+ ++    ++
Sbjct: 30  CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG--DVGVHCVLQGLQTPSCKI 87

Query: 138 KTLVLNG--------SSLISVIAGNNKLQSLIVS------------------PRPARLQH 171
           + L L            L S +     LQ L +S                  P+  RL+ 
Sbjct: 88  QKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC-RLEK 146

Query: 172 LDISYNEL-----ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG----KLHTLQL 222
           L + Y  L     E L   +   P+ + +  S+N I +   +  C+ L     +L  L+L
Sbjct: 147 LQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKL 206

Query: 223 SFNRLT-----SLPSLIRQIASLKYLFLQSNSI-----NILPQLFLQNSSKLKVLNISKN 272
               +T      L  ++   ASL+ L L SN +       L    L  SS+L+ L I + 
Sbjct: 207 ESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC 266

Query: 273 CL 274
            +
Sbjct: 267 GI 268

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.3 bits (139), Expect = 6e-09
 Identities = 39/214 (18%), Positives = 73/214 (34%), Gaps = 50/214 (23%)

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG--------SSLISVIAGNNK 156
           ++ +LD+    +       L  L  ++    Q + + L+           + S +  N  
Sbjct: 4   DIQSLDIQCEELSDARWAEL--LPLLQ----QCQVVRLDDCGLTEARCKDISSALRVNPA 57

Query: 157 LQSLIVS-----------------PRPARLQHLDISYNEL-----ESLPDWIDTCPELET 194
           L  L +                      ++Q L +    L       L   + T P L+ 
Sbjct: 58  LAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQE 117

Query: 195 IFASHNRITQLPSQFFCRELG----KLHTLQLSFNRLTS-----LPSLIRQIASLKYLFL 245
           +  S N +     Q  C  L     +L  LQL +  L++     L S++R     K L +
Sbjct: 118 LHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTV 177

Query: 246 QSNSIN-----ILPQLFLQNSSKLKVLNISKNCL 274
            +N IN     +L Q    +  +L+ L +    +
Sbjct: 178 SNNDINEAGVRVLCQGLKDSPCQLEALKLESCGV 211

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 56.1 bits (136), Expect = 1e-08
 Identities = 44/222 (19%), Positives = 71/222 (31%), Gaps = 41/222 (18%)

Query: 84  LTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
           L  + L    L       L        +   L VS N I   + G     + +K S  QL
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN--EAGVRVLCQGLKDSPCQL 201

Query: 138 KTLVLNGSSL----ISVIAGNNKLQSLIVSPRPARLQHLDISYNELES------LPDWID 187
           + L L    +       +        +        L+ L +  N+L         P  + 
Sbjct: 202 EALKLESCGVTSDNCRDLC-----GIVASKAS---LRELALGSNKLGDVGMAELCPGLLH 253

Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQ---LSFNRLTS------LPSLIRQIA 238
               L T++     IT       CR L    +L+   L+ N L          +L+    
Sbjct: 254 PSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGC 313

Query: 239 SLKYLFLQSNSIN-----ILPQLFLQNSSKLKVLNISKNCLK 275
            L+ L+++S S           + L  +  L  L IS N L+
Sbjct: 314 QLESLWVKSCSFTAACCSHFSSV-LAQNRFLLELQISNNRLE 354

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 63.2 bits (154), Expect = 2e-11
 Identities = 42/156 (26%), Positives = 66/156 (42%), Gaps = 16/156 (10%)

Query: 131 KCSRNQLKTLVLNGSSLISVIAG-----------NNKLQSL--IVSPRPARLQHLDISYN 177
           +CS +   T+        SV AG           +N++  L   V      L+ L +  N
Sbjct: 16  QCSCSG-TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN 74

Query: 178 ELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ 236
           +L +LP  + D+  +L  +    N++T LPS  F R L  L  L +  N+LT LP  I +
Sbjct: 75  QLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDR-LVHLKELFMCCNKLTELPRGIER 133

Query: 237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
           +  L +L L  N +  +P       S L    +  N
Sbjct: 134 LTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 34/127 (26%), Positives = 46/127 (36%), Gaps = 31/127 (24%)

Query: 83  ELTSVNLRSNQLK----GTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLK 138
            L  + L SNQL     G  +  +   LT LD+  N +  L     +RL         LK
Sbjct: 65  NLKELYLGSNQLGALPVG--VFDSLTQLTVLDLGTNQLTVLPSAVFDRL-------VHLK 115

Query: 139 TLVLNGSSLISVIAGNNKLQSLIVSPR----PARLQHLDISYNELESLPDWI-DTCPELE 193
            L +            NKL  L   PR       L HL +  N+L+S+P    D    L 
Sbjct: 116 ELFMC----------CNKLTEL---PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLT 162

Query: 194 TIFASHN 200
             +   N
Sbjct: 163 HAYLFGN 169

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 47/220 (21%), Positives = 89/220 (40%), Gaps = 35/220 (15%)

Query: 84  LTSVNLRSNQL--KGTIILG-----NYGNLTTLDVSENSIESLDLGAL-NRLESIKCSRN 135
           +TS++L  N L    T+ L         ++T+L++S NS+   +   L   L +I  +  
Sbjct: 24  VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN-- 81

Query: 136 QLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL-----ESLPDWIDTCP 190
            + +L L+G+ L      +++L   + +  P  +  LD+ +N+                P
Sbjct: 82  -VTSLNLSGNFLSY--KSSDELVKTLAAI-PFTITVLDLGWNDFSSKSSSEFKQAFSNLP 137

Query: 191 E-LETIFASHNRITQLPSQFFCREL----GKLHTLQLSFNRLTS-----LPSLIRQI-AS 239
             + ++    N +    S    + L      +++L L  N L S     L   +  I AS
Sbjct: 138 ASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPAS 197

Query: 240 LKYLFLQSNSIN-----ILPQLFLQNSSKLKVLNISKNCL 274
           +  L L +N +       L  +F    + +  LN+  NCL
Sbjct: 198 VTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCL 237

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 37/246 (15%), Positives = 80/246 (32%), Gaps = 57/246 (23%)

Query: 84  LTSVNLRSNQL--KGTIILG-----NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQ 136
           +TS+NL  N L  K +  L         N+T+L++S N +      +   ++++      
Sbjct: 53  VTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS--YKSSDELVKTLAAIPFT 110

Query: 137 LKTLVLNG--------SSLISVIAGNNK-LQSLIVS-----------------PRPARLQ 170
           +  L L          S      +     + SL +                    PA + 
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170

Query: 171 HLDISYNEL-----ESLPDWIDTCPE-LETIFASHNRITQLPSQFFCREL----GKLHTL 220
            L++  N L       L  ++ + P  + ++  S N +                  + +L
Sbjct: 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSL 230

Query: 221 QLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQ-------LFLQNSSKLKVLN 268
            L  N L       L  L   +  L+ ++L  + +  + +           N  K+ +++
Sbjct: 231 NLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVD 290

Query: 269 ISKNCL 274
            +   +
Sbjct: 291 KNGKEI 296

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A Length = 389

 Score = 64.1 bits (156), Expect = 3e-11
 Identities = 40/234 (17%), Positives = 75/234 (32%), Gaps = 65/234 (27%)

Query: 302 ALIGIFDSGDNGDIASTLVQS-IPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYS 360
               ++D G  G  A+    + + + +++    ++     +    L   +         +
Sbjct: 150 LYFAVYD-GHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSA 208

Query: 361 L-------SATLCHLSLHPVTHRYMLHIASVGEAKAILCR--QAGSLTFTHAPTL----- 406
                   +     L    +     L +ASVG+++AILCR  +   LT  H P       
Sbjct: 209 DATLLTSGTTATVAL----LRDGIELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKE 264

Query: 407 -----------SPPVPP--QGS--------------CPLSFPDPHVTEVML-HENDHFLI 438
                      +    P   G                 +   +P    + L H +D FL+
Sbjct: 265 RIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVI-AEPETKRIKLHHADDSFLV 323

Query: 439 LA---------N-------KSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG 476
           L          +           +P  AA  + + A  YG+EDN + +V+ F  
Sbjct: 324 LTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGA 377

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 62.8 bits (152), Expect = 9e-11
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 164 PRPARLQHLDISYN-ELESLPDW-IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221
           P    L  L I     L+ L    +    EL  +    + +  +    F     +L  L 
Sbjct: 28  PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAF-HFTPRLSRLN 86

Query: 222 LSFNRLTSLPSLIRQIASLKYLFLQSNSIN 251
           LSFN L SL     Q  SL+ L L  N ++
Sbjct: 87  LSFNALESLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.0 bits (116), Expect = 2e-06
 Identities = 20/119 (16%), Positives = 40/119 (33%), Gaps = 9/119 (7%)

Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR-LTSLPS-LIRQIASLKYLFL 245
                  +  + +                L  L +   + L  L    +R +  L+ L +
Sbjct: 6   CPHGSSGLRCTRDGALDSLHHL--PGAENLTELYIENQQHLQHLELRDLRGLGELRNLTI 63

Query: 246 QSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL---PGFCNSD 301
             + +  +       + +L  LN+S N L+ L    K    L++ +L L   P  C+  
Sbjct: 64  VKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS--WKTVQGLSLQELVLSGNPLHCSCA 120

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.8 bits (100), Expect = 2e-04
 Identities = 19/85 (22%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 83  ELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGA---LNRLESIKCSRNQ 136
            LT + + + Q    +    L   G L  L + ++ +  +   A     RL  +  S N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 137 LKTL---VLNGSSLISVIAGNNKLQ 158
           L++L    + G SL  ++   N L 
Sbjct: 92  LESLSWKTVQGLSLQELVLSGNPLH 116

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 57.8 bits (140), Expect = 3e-10
 Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 16/124 (12%)

Query: 172 LDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL- 230
           LD S +    L    D   ELE +   +  +T + +     +L KL  L+LS NR++   
Sbjct: 24  LDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN---LPKLNKLKKLELSDNRVSGGL 80

Query: 231 PSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKN-----------CLKMLP 278
             L  +  +L +L L  N I  L  +  L+    LK L++                K+LP
Sbjct: 81  EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLP 140

Query: 279 SLQK 282
            L  
Sbjct: 141 QLTY 144

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.4 bits (113), Expect = 1e-06
 Identities = 32/166 (19%), Positives = 57/166 (34%), Gaps = 46/166 (27%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
           EL   N RSN+ K   +   +  L  L      + S+                       
Sbjct: 21  ELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIA---------------------- 58

Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNR 201
                         L  L       +L+ L++S N +    + + + CP L  +  S N+
Sbjct: 59  -------------NLPKLN------KLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNK 99

Query: 202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLP----SLIRQIASLKYL 243
           I  L +    ++L  L +L L    +T+L     ++ + +  L YL
Sbjct: 100 IKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.8 bits (109), Expect = 5e-06
 Identities = 25/109 (22%), Positives = 49/109 (44%), Gaps = 1/109 (0%)

Query: 188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247
           T  +++ +   ++R  +   +    E  +L  L      LTS+ +L  ++  LK L L  
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANL-PKLNKLKKLELSD 73

Query: 248 NSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
           N ++   ++  +    L  LN+S N +K L +++    L N+  L L  
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFN 122

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 58.8 bits (143), Expect = 3e-10
 Identities = 34/108 (31%), Positives = 53/108 (49%), Gaps = 2/108 (1%)

Query: 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
           P  +  L +  N+   +P  +     L  I  S+NRI+ L +Q F   + +L TL LS+N
Sbjct: 30  PRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN-MTQLLTLILSYN 88

Query: 226 RLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
           RL  +P      + SL+ L L  N I+++P+    + S L  L I  N
Sbjct: 89  RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 29/125 (23%), Positives = 50/125 (40%), Gaps = 31/125 (24%)

Query: 85  TSVNLRSNQLKGT-IILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLN 143
           T + L  NQ       L NY +LT +D+S N I +L   + + +        QL TL+L+
Sbjct: 34  TELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNM-------TQLLTLILS 86

Query: 144 GSSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI-DTCPELETI 195
                      N+L+ +     P R       L+ L +  N++  +P+   +    L  +
Sbjct: 87  ----------YNRLRCI-----PPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHL 131

Query: 196 FASHN 200
               N
Sbjct: 132 AIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 44.6 bits (106), Expect = 2e-05
 Identities = 17/60 (28%), Positives = 28/60 (46%)

Query: 220 LQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           L L  N+ T +P  +     L  + L +N I+ L      N ++L  L +S N L+ +P 
Sbjct: 36  LYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPP 95

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 58.9 bits (143), Expect = 4e-10
 Identities = 49/170 (28%), Positives = 80/170 (47%), Gaps = 27/170 (15%)

Query: 85  TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
           T+V   S     ++  G     T LD+  NS++SL  G  + L         L  L L G
Sbjct: 10  TTVECYSQGRT-SVPTGIPAQTTYLDLETNSLKSLPNGVFDEL-------TSLTQLYLGG 61

Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRIT 203
           + L S+  G        V  +   L +L++S N+L+SLP+ + D   +L+ +  + N++ 
Sbjct: 62  NKLQSLPNG--------VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ 113

Query: 204 QLPSQFFCRELGKLHTLQLSFNRLTSLP-----SLIRQIASLKYLFLQSN 248
            LP   F + L +L  L+L  N+L S+P      L     SL+Y++L  N
Sbjct: 114 SLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRL----TSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 55.5 bits (134), Expect = 6e-09
 Identities = 39/115 (33%), Positives = 63/115 (54%), Gaps = 3/115 (2%)

Query: 166 PARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
           PA+  +LD+  N L+SLP+ + D    L  ++   N++  LP+  F + L  L  L LS 
Sbjct: 27  PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNK-LTSLTYLNLST 85

Query: 225 NRLTSLPSLI-RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP 278
           N+L SLP+ +  ++  LK L L +N +  LP       ++LK L + +N LK +P
Sbjct: 86  NQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVP 140

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 57.4 bits (139), Expect = 5e-10
 Identities = 31/147 (21%), Positives = 59/147 (40%), Gaps = 20/147 (13%)

Query: 117 ESLDLGALNRLESIKCSRNQLKTLVLNGSSL-ISVIAG--------------NNKLQSLI 161
             +D+     LE    +   ++ LVL+        I G              N  L S+ 
Sbjct: 6   SGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVS 65

Query: 162 VSPRPARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTL 220
             P+  +L+ L++S N +    D + +  P L  +  S N++  + +    ++L  L +L
Sbjct: 66  NLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSL 125

Query: 221 QLSFNRLTSLP----SLIRQIASLKYL 243
            L    +T+L     S+ + +  L YL
Sbjct: 126 DLFNCEVTNLNDYRESVFKLLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 45.9 bits (109), Expect = 5e-06
 Identities = 24/107 (22%), Positives = 40/107 (37%), Gaps = 1/107 (0%)

Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS 249
             +  +   + +      +    E   L  L L    L S+ +L  ++  LK L L  N 
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNL-PKLPKLKKLELSENR 82

Query: 250 INILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG 296
           I     +  +    L  LN+S N LK + +L+    L  +  L L  
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFN 129

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 57.3 bits (139), Expect = 1e-09
 Identities = 24/110 (21%), Positives = 45/110 (40%), Gaps = 4/110 (3%)

Query: 166 PARLQHLDISYNELESLPDW--IDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS 223
           P     L ++ NEL  +         P L  +    N++T +    F      +  LQL 
Sbjct: 28  PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLG 86

Query: 224 FNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
            N++  + + +   +  LK L L  N I+ +     ++ + L  LN++ N
Sbjct: 87  ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.8 bits (109), Expect = 8e-06
 Identities = 18/82 (21%), Positives = 33/82 (40%), Gaps = 1/82 (1%)

Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQL 256
           + N + ++ S      L  L  L+L  N+LT +        + ++ L L  N I  +   
Sbjct: 37  NDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNK 96

Query: 257 FLQNSSKLKVLNISKNCLKMLP 278
                 +LK LN+  N +  + 
Sbjct: 97  MFLGLHQLKTLNLYDNQISCVM 118

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 17/127 (13%), Positives = 43/127 (33%), Gaps = 33/127 (25%)

Query: 85  TSVNLRSNQ---LKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV 141
           T + L  N+   +    + G   +L  L++  N +  ++  A             ++ L 
Sbjct: 32  TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-------HIQELQ 84

Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPAR-------LQHLDISYNELESLPDWI-DTCPELE 193
           L            NK++ +       +       L+ L++  N++  +     +    L 
Sbjct: 85  LG----------ENKIKEI-----SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLT 129

Query: 194 TIFASHN 200
           ++  + N
Sbjct: 130 SLNLASN 136

>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens} Length = 307

 Score = 58.2 bits (141), Expect = 2e-09
 Identities = 32/260 (12%), Positives = 72/260 (27%), Gaps = 77/260 (29%)

Query: 289 ISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEERTVKETASDYMKYTMLT 347
            + + +P      +   ++D G  G   +    + +   +      +   +      +  
Sbjct: 43  TAVVGIPHGLEDWSFFAVYD-GHAGSRVANYCSTHLLEHITTNEDFRA--AGKSGSALEL 99

Query: 348 AHREIKDSLHRYSLSATLCHLSLHPVTHRY---------------MLHIASVGEAKAILC 392
           +   +K+ +    L       +   + +                  ++  + G+++A+L 
Sbjct: 100 SVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGSTAVGVMISPKHIYFINCGDSRAVLY 159

Query: 393 R--QAGSLTFTHAPTLS-----------------------------------PPVPPQGS 415
           R  Q    T  H P                                              
Sbjct: 160 RNGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGDYDYKCVDGKGPTE 219

Query: 416 CPLSFPDPHVTEVMLHENDHFLILA--------------------NKSVSEPVLAAKRIQ 455
             +S P+P V E++  E D F+ILA                     +   +       + 
Sbjct: 220 QLVS-PEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVV 278

Query: 456 DLAQSYGSEDNLSVLVLRFQ 475
           D     GS DN+S++++ F 
Sbjct: 279 DTCLHKGSRDNMSIVLVCFS 298

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 58.6 bits (142), Expect = 2e-09
 Identities = 40/224 (17%), Positives = 71/224 (31%), Gaps = 37/224 (16%)

Query: 84  LTSVNLRSNQL--KGTIILGNY----GNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
           L +V L  N         L ++      L  L +  N +            ++      +
Sbjct: 96  LHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG--PQAGAKIARAL--QELAV 151

Query: 138 KTLVLNGSSLISVIAGNNKLQSLIVS------PRPARLQHLDISYNELES------LPDW 185
                N   L S+I G N+L++  +            L  + +  N +        L + 
Sbjct: 152 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 211

Query: 186 IDTCPELETIFASHNRITQLPSQFFCRELGK---LHTLQLSFNRLTS-----LPSLIRQI 237
           +  C EL+ +    N  T L S      L     L  L L+   L++     +     ++
Sbjct: 212 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271

Query: 238 A--SLKYLFLQSNSIN-----ILPQLFLQNSSKLKVLNISKNCL 274
               L+ L LQ N I       L  +  +    L  L ++ N  
Sbjct: 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 40/231 (17%), Positives = 77/231 (33%), Gaps = 46/231 (19%)

Query: 84  LTSVNLRSNQL--KGTIILG----NYGNLTTLDVSENSIESLDLGALNRLESI-----KC 132
           +  + L  N +  +    L     +  +L   + S+     +       L  +     KC
Sbjct: 34  VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC 93

Query: 133 SRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL---------ESLP 183
              +L T+ L+ ++          L   +    P  L+HL +  N L          +L 
Sbjct: 94  P--KLHTVRLSDNAFGP--TAQEPLIDFLSKHTP--LEHLYLHNNGLGPQAGAKIARALQ 147

Query: 184 D-----WIDTCPELETIFASHNRITQLPSQFFCRELGK---LHTLQLSFNRLTS------ 229
           +          P L +I    NR+     + + +       LHT+++  N +        
Sbjct: 148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHL 207

Query: 230 LPSLIRQIASLKYLFLQSNSI-----NILPQLFLQNSSKLKVLNISKNCLK 275
           L   +     LK L LQ N+      + L    L++   L+ L ++   L 
Sbjct: 208 LLEGLAYCQELKVLDLQDNTFTHLGSSALAIA-LKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.3 bits (136), Expect = 1e-08
 Identities = 32/236 (13%), Positives = 65/236 (27%), Gaps = 46/236 (19%)

Query: 79  EVKGELTSVNLRSNQLKGTIILGNYG------------NLTTLDVSENSIESLDLGALNR 126
             K +L                                 L T+ +S+N+           
Sbjct: 57  ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG--PTAQEPL 114

Query: 127 LESIKCSRNQLKTLVLN--------GSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
           ++ +      L+ L L+        G+ +   +      +    +P    L+ +    N 
Sbjct: 115 IDFLSKHTP-LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAP---PLRSIICGRNR 170

Query: 179 LES-----LPDWIDTCPELETIFASHNRITQLPSQFFCRELGK----LHTLQLSFNRLT- 228
           LE+           +   L T+    N I     +    E       L  L L  N  T 
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 229 ----SLPSLIRQIASLKYLFLQSNSI------NILPQLFLQNSSKLKVLNISKNCL 274
               +L   ++   +L+ L L    +       ++       +  L+ L +  N +
Sbjct: 231 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI 286

>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A Length = 382

 Score = 56.7 bits (137), Expect = 8e-09
 Identities = 38/275 (13%), Positives = 75/275 (27%), Gaps = 75/275 (27%)

Query: 289 ISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEERTVKETASDYMKYTMLT 347
            + + LP    S +   ++D G  G   +      +   +   +  K +A       +  
Sbjct: 41  TAVIGLPSGLESWSFFAVYD-GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKN 99

Query: 348 AHREIKDSLHRYSLSATLCHLSLHPVTH-----------RYMLHIASVGEAKAILCR--Q 394
               I+           +     H                   +  + G+++ +LCR  +
Sbjct: 100 G---IRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRK 156

Query: 395 AGSLTFTHAPTL-----------------------------------SPPVPPQGSCPLS 419
               T  H P+                                               +S
Sbjct: 157 VHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVS 216

Query: 420 FPDPHVTEVML-HENDHFLILA--------------------NKSVSEPVLAAKRIQDLA 458
            P+P V ++    E+D F+ILA                     +   +       + D  
Sbjct: 217 -PEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTC 275

Query: 459 QSYGSEDNLSVLVLRFQGSEFDSRTRDAKLSSMRK 493
              GS DN+SV+++ F  +   S     K + + K
Sbjct: 276 LYKGSRDNMSVILICFPNAPKVSPEAVKKEAELDK 310

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 53.8 bits (130), Expect = 1e-08
 Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 3/109 (2%)

Query: 166 PARLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF 224
           P+    L++  N+L+SLP  + D   +L  +  S N+I  LP   F + L KL  L L  
Sbjct: 27  PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-LTKLTILYLHE 85

Query: 225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN 272
           N+L SLP+ +  ++  LK L L +N +  +P       + L+ + +  N
Sbjct: 86  NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134

>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii} Length = 377

 Score = 54.6 bits (131), Expect = 4e-08
 Identities = 29/202 (14%), Positives = 54/202 (26%), Gaps = 66/202 (32%)

Query: 375 HRYMLHIASVGEAKAILCR--QAGSLTFTHAPTL-------------------------- 406
             Y +H+AS+G ++ +L     A  L+  H  +                           
Sbjct: 164 GIYTIHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRVQAAGGVFTTVNGELLLGGV 223

Query: 407 -------------SPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILA------------- 440
                                   +S   P VT    +  D  ++               
Sbjct: 224 VPMTRAFGSFDFKKGGQGKLQQDLVS-AVPDVTTFFAYPGD-DIVAGTAGAFAHFRSHAA 281

Query: 441 --------NKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDAKLSSMR 492
                     S    + AAK +   A+      N+S  V     S   +R++     +  
Sbjct: 282 IAAAIALYPVSPETVLDAAKAMVVNAKRRKVTKNISTFVRHLPESR--TRSQKMLEGTSG 339

Query: 493 KLGVQDPECPWTIEYDRSSPSG 514
           + G +D     T E  ++  +G
Sbjct: 340 ENGEEDFSIDRTNELTQALQAG 361

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174

 Score = 50.7 bits (122), Expect = 1e-07
 Identities = 33/124 (26%), Positives = 58/124 (46%), Gaps = 23/124 (18%)

Query: 131 KCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI-DTC 189
           +CS +Q   +      L SV AG       I    P   Q L ++ N++  L   + D  
Sbjct: 9   QCSCDQ-TLVNCQNIRLASVPAG-------I----PTDKQRLWLNNNQITKLEPGVFDHL 56

Query: 190 PELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-----SLIRQIASLKYLF 244
             L+ ++ + N++T +P+  F + L +L  L L+ N L S+P     +L     SL +++
Sbjct: 57  VNLQQLYFNSNKLTAIPTGVFDK-LTQLTQLDLNDNHLKSIPRGAFDNL----KSLTHIY 111

Query: 245 LQSN 248
           L +N
Sbjct: 112 LYNN 115

>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B* Length = 316

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 50/264 (18%), Positives = 79/264 (29%), Gaps = 95/264 (35%)

Query: 302 ALIGIFDSGDNGDIASTLVQS-IPRILLEE-RTVKETASDY----------MKYTMLTAH 349
              G++D G  G   +   +  +   L EE    K   SD           +  + L   
Sbjct: 53  HFFGVYD-GHGGSQVANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVD 111

Query: 350 REIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCR--QAGSLTFTHAPTLS 407
            EI+        S ++  +    V     + +A+ G+++A+LCR   A  L+  H P   
Sbjct: 112 SEIESVAPETVGSTSVVAV----VFPS-HIFVANCGDSRAVLCRGKTALPLSVDHKPDRE 166

Query: 408 ------------------PPVPPQGSCPLS------------FPDPHVTEVMLHENDHFL 437
                               V   G   +S             PDP VT V   + D  L
Sbjct: 167 DEAARIEAAGGKVIQWNGARV--FGVLAMSRSIGDRYLKPSIIPDPEVTAVKRVKEDDCL 224

Query: 438 ILA-------------------------------------------NKSVSEPVLAAKRI 454
           ILA                                                  + AA+ +
Sbjct: 225 ILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMSAAEYL 284

Query: 455 QDLAQSYGSEDNLSVLVLRFQGSE 478
             LA   GS+DN+SV+V+  +   
Sbjct: 285 SKLAIQRGSKDNISVVVVDLKPRR 308

>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3ujg_B 3nmt_B* 3rt0_A 3kb3_B* Length = 337

 Score = 51.1 bits (122), Expect = 5e-07
 Identities = 46/305 (15%), Positives = 83/305 (27%), Gaps = 95/305 (31%)

Query: 273 CLKMLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEER 331
                  L     + +   +       +    G++D G  G   +   +  +   L EE 
Sbjct: 34  VSPHFLKLPIKMLMGDHEGMSPSLTHLTGHFFGVYD-GHGGHKVADYCRDRLHFALAEEI 92

Query: 332 TVKETAS--------------DYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHP----- 372
              +                        LT   EI+  + R  + ++   L         
Sbjct: 93  ERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDKVLEAVASETVG 152

Query: 373 ------VTHRYMLHIASVGEAKAILCR--QAGSLTFTHAPTLSP----------PVPPQG 414
                 +     + +++ G+++A+L R  +A  L+  H P               V    
Sbjct: 153 STAVVALVCSSHIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQ 212

Query: 415 SC------------------PLSFPDPHVTEVMLHENDHFLILA---------------- 440
                               P   P+P VT +     D  LILA                
Sbjct: 213 GARVFGVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEI 272

Query: 441 ---------------------NKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ-GSE 478
                                         AA  +  LA   GS+DN+S++V+  +   +
Sbjct: 273 ARRRILMWHKKNGAPPLAERGKGIDPACQAAADYLSMLALQKGSKDNISIIVIDLKAQRK 332

Query: 479 FDSRT 483
           F +RT
Sbjct: 333 FKTRT 337

>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae} Length = 304

 Score = 48.5 bits (116), Expect = 3e-06
 Identities = 29/264 (10%), Positives = 78/264 (29%), Gaps = 85/264 (32%)

Query: 294 LPGFCNSDALIGIFDSGDNGDIASTLVQS-IPRILLEE-------------RTVKETASD 339
           +  F +  +   ++D G  G   +      +P  L                       + 
Sbjct: 44  ILNFDDQCSFFAVYD-GHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDAT 102

Query: 340 YMKYTMLTAHREIKDSLHRYSLSATLCHLS--LHPVTHRYMLHIASVGEAKAILCR--QA 395
            ++  ++   + +                   +  + H   L++A+ G+++ ++CR  +A
Sbjct: 103 LLQEKVIEELKVLSGDSAGSDAEPGKDSGCTAVVALLHGKDLYVANAGDSRCVVCRNGKA 162

Query: 396 GSLTFTHAPTL-------------------------------------SPPVPPQGSCPL 418
             ++F H P                                       +  +P +    +
Sbjct: 163 LEMSFDHKPEDTVEYQRIEKAGGRVTLDGRVNGGLNLSRAIGDHGYKMNKSLPAEEQ-MI 221

Query: 419 SFPDPHVTEVMLHENDHFLILA---------------------NKSVSEPVLAAKRIQDL 457
           S   P + ++ +   D F++LA                     NK   +     + + D 
Sbjct: 222 S-ALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDH 280

Query: 458 AQSYGSE------DNLSVLVLRFQ 475
             +  +       DN++ ++++F+
Sbjct: 281 CLAPHTRGDGTGCDNMTAIIVQFK 304

>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii} Length = 364

 Score = 47.4 bits (112), Expect = 7e-06
 Identities = 30/193 (15%), Positives = 54/193 (27%), Gaps = 66/193 (34%)

Query: 371 HPVTHRYMLHIASVGEAKAILCRQAGS---LTFTHAPTL--------------------- 406
                 +++   ++G+++A L    G    L+  H P                       
Sbjct: 167 TIPAGSFLVTAINIGDSRATLIHSDGGLTRLSKDHKPNHPTEASRIEKAGGSVETFDVPR 226

Query: 407 -----------------SPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILA--------- 440
                              P  P     +    P V +         L+LA         
Sbjct: 227 VDGVLALSRAFGDSDFKMNPNLPPEEQKVI-AVPDVRQFYALS-SDLLLLACDGVYEPSG 284

Query: 441 --------------NKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSEFDSRTRDA 486
                          +S  +    A R+ D A    S+DN+SV+++ F   E +  T   
Sbjct: 285 MDWAYVRDLTVAEMQRSKGDLEEVAARVMDYAYDMNSQDNISVMLVAFHNQEVEHPTAVY 344

Query: 487 KLSSMRKLGVQDP 499
           K+ S +   V+  
Sbjct: 345 KVVSGQVDKVEWD 357

>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii} Length = 324

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 12/80 (15%), Positives = 26/80 (32%), Gaps = 22/80 (27%)

Query: 421 PDPHVTEVMLHENDHFLILA-----------------NKSVSEPVLAAKRI-----QDLA 458
             P V  V +      +ILA                  ++  E    A+ +      +  
Sbjct: 245 NQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQARQEGRNPAQALVEMTLAEQQ 304

Query: 459 QSYGSEDNLSVLVLRFQGSE 478
               S DN++ + + F+ ++
Sbjct: 305 SRNQSADNITAMTVFFKKTD 324

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 46.1 bits (108), Expect = 2e-05
 Identities = 49/311 (15%), Positives = 99/311 (31%), Gaps = 44/311 (14%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER 60
            ++  V+  +        ++         A+  ++ +   L+    P    I  G     
Sbjct: 61  TKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLPSLKQITIGXWGYE 120

Query: 61  EEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNY-GNLTTLDVSENSIESL 119
            ED     DGI+  + +         +       +   I      +L+ +  +   + +L
Sbjct: 121 GEDCSDIADGIVENKEKFA---HFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNL 177

Query: 120 DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
            +   N L   K  R  LK+L +     IS    ++ ++ ++ S  P  L+ L +     
Sbjct: 178 KIKGTNNLSIGKKPRPNLKSLEI-----ISGGLPDSVVEDILGSDLPN-LEKLVLYVGVE 231

Query: 180 ESLPD----------WIDTCPELETIFASHNRITQLPSQFF--CRELGKLHTLQLSFNRL 227
           +   D            D  P L+ +         +  + F     L +L T+ +S   L
Sbjct: 232 DYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVL 291

Query: 228 TSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL--KMLPSLQKGF- 284
           T      R +                    +     LK +N+  N L  +M   LQK   
Sbjct: 292 TD--EGARLLLDH-----------------VDKIKHLKFINMKYNYLSDEMKKELQKSLP 332

Query: 285 YLLNISQLRLP 295
             +++S  +  
Sbjct: 333 MKIDVSDSQEY 343

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 30/191 (15%), Positives = 62/191 (32%), Gaps = 33/191 (17%)

Query: 105 NLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSP 164
           +L  L+++   +  +    +     +   R+ L  + L    L         L++L   P
Sbjct: 73  SLRQLNLAGVRMTPVKCTVV--AAVLGSGRHALDEVNLASCQL-----DPAGLRTL--LP 123

Query: 165 RPARLQHLDISYNEL---------ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG 215
              R + L +  N L         + L   +    ++ T+  S+N +T          L 
Sbjct: 124 VFLRARKLGLQLNSLGPEACKDLRDLL---LHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180

Query: 216 ---KLHTLQLSFNRLT-----SLPSLIRQIASLKYLFLQSNSINILP----QLFLQNSSK 263
               +  L L    L       L + + +   L+ L +  N              +    
Sbjct: 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPS 240

Query: 264 LKVLNISKNCL 274
           L++L++  N L
Sbjct: 241 LELLHLYFNEL 251

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 33/218 (15%), Positives = 66/218 (30%), Gaps = 47/218 (21%)

Query: 79  EVKGELTSVNLRSNQLK-------GTIILGNYGNLTTLDVSENSI-----ESLDLGALNR 126
           EV   L  +NL   ++          ++      L  ++++   +      +L L    R
Sbjct: 69  EVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTL-LPVFLR 127

Query: 127 LESIKCSRNQL---------KTLVLNGSSLISVIAGNNKLQS---------LIVSPRPAR 168
              +    N L           L+ +   + ++   NN L +         L  +     
Sbjct: 128 ARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTS--- 184

Query: 169 LQHLDISYNEL-----ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELG---KLHTL 220
           + HL + +  L     E L   +D   +L+ +  ++N      +    R       L  L
Sbjct: 185 VTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELL 244

Query: 221 QLSFNRLT-----SLPSLIRQIASLKYLFLQSNSINIL 253
            L FN L+      L  L         + +       +
Sbjct: 245 HLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAV 282

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Length = 267

 Score = 43.1 bits (101), Expect = 1e-04
 Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 24/182 (13%)

Query: 123 ALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE--LE 180
           AL  +      R   +  ++  SS       N      +   +    +  D S     L+
Sbjct: 76  ALKAVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKLIMSKRYDGSQQALDLK 135

Query: 181 SLPDWIDTCPELETIFASHNRITQLPSQFF--CRELGKLHTLQLSFNRLTSL---PSLIR 235
            L    D     + I    NR + + +        + +L +L LS NRL  L    S+++
Sbjct: 136 GLR--SDPDLVAQNIDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQ 193

Query: 236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKN---------------CLKMLPSL 280
           +  +LK L L  N +    +L      KL+ L +  N                 +  P L
Sbjct: 194 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAIRERFPKL 253

Query: 281 QK 282
            +
Sbjct: 254 LR 255

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 4/80 (5%)

Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
             +D S   L S+P  I T    + ++   N+IT+L    F R L +L  L L  N+LT 
Sbjct: 12  TTVDCSGKSLASVPTGIPT--TTQVLYLYDNQITKLEPGVFDR-LTQLTRLDLDNNQLTV 68

Query: 230 LPS-LIRQIASLKYLFLQSN 248
           LP+ +  ++  L  L L  N
Sbjct: 69  LPAGVFDKLTQLTQLSLNDN 88

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170

 Score = 40.3 bits (95), Expect = 4e-04
 Identities = 34/136 (25%), Positives = 54/136 (39%), Gaps = 47/136 (34%)

Query: 131 KCSRNQLKTLVLNGSSLISVIAG-----------NNKLQSLI--VSPRPARLQHLDISYN 177
           +CS +   T+  +G SL SV  G           +N++  L   V  R  +L  LD+  N
Sbjct: 6   QCSCSG-TTVDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNN 64

Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-----S 232
           +L  LP           +F                 L +L  L L+ N+L S+P     +
Sbjct: 65  QLTVLP---------AGVFDK---------------LTQLTQLSLNDNQLKSIPRGAFDN 100

Query: 233 LIRQIASLKYLFLQSN 248
           L     SL +++L +N
Sbjct: 101 L----KSLTHIWLLNN 112

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	567
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.97
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.96
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.96
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.96
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.95
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.95
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.95
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.95
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.95
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.95
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.95
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.95
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.95
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.95
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.95
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.95
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.95
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.94
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.94
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.94
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.94
2p8e_A	307	PPM1B beta isoform variant 6; structural genomics,	99.94
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.93
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.93
3qn1_B	337	Protein phosphatase 2C 16; start domain, BET V dom	99.93
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
3kdj_B	316	Protein phosphatase 2C 56; ABA, PYL1, abscisic aci	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.93
1a6q_A	382	Phosphatase 2C; catalytic mechanism, metalloenzyme	99.93
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.93
2i0o_A	304	Ser/Thr phosphatase; beta sandwich, structural gen	99.93
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.92
2iq1_A	274	Protein phosphatase 2C kappa, PPM1K; structural ge	99.92
3d8k_A	377	PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR	99.92
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.92
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.92
2isn_A	364	NYSGXRC-8828Z, phosphatase; pathogenic strain, pra	99.91
2irm_A	358	Mitogen-activated protein kinase kinase kinase 7 i	99.91
4da1_A	389	Protein phosphatase 1K, mitochondrial; metal-ION-a	99.91
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.91
2pnq_A	467	[pyruvate dehydrogenase [lipoamide]]-phosphatase 1	99.91
2i44_A	324	Serine-threonine phosphatase 2C; PSI-2, 8817Z, str	99.91
2j4o_A	401	Mitogen-activated protein kinase kinase kinase 7-i	99.91
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.9
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.9
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.9
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.9
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.89
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.89
2pk0_A	250	Serine/threonine protein phosphatase STP1; SI moti	99.88
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
1txo_A	237	Putative bacterial enzyme; serine/threonine protei	99.88
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.87
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.87
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.87
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2j82_A	240	TPPHA, protein serine-threonine phosphatase; PP2C	99.86
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.86
3rnr_A	211	Stage II sporulation E family protein; structural	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.85
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.85
2jfr_A	234	Ser-Thr phosphatase MSPP; hydrolase, PPM phosphata	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.84
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.83
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.82
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.82
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.81
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.81
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.81
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.8
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.8
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.79
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.76
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.73
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.73
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.73
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.7
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.69
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.69
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.68
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.66
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.63
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.58
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.57
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.57
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.56
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.56
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.55
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.55
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.53
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.53
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.53
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.52
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.51
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.47
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.45
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.41
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.35
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.34
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.21
3pu9_A	242	Protein serine/threonine phosphatase; PSI-biology,	99.15
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.13
3t91_A	242	Stage II sporulation protein E; SPOIIE, phosphatas	99.12
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.01
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.01
3f79_A	255	Probable two-component response regulator; adaptor	98.79
3zt9_A	193	Serine phosphatase; hydrolase, signal transduction	98.77
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.7
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.64
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.61
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.51
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.51
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.35
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.27
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.08
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.9
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.62
3ke6_A	399	Protein RV1364C/MT1410; anti-sigma factor, anti-si	97.62
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.5
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	97.36
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.18
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.96
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	96.87
3eq2_A	394	Probable two-component response regulator; adaptor	95.21

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2.8e-29  Score=262.01  Aligned_cols=280  Identities=19%  Similarity=0.198  Sum_probs=210.4

Q ss_pred             CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc-CCC
Q psy12423          1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER-REP   78 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~   78 (567)
                      |++|+|++|.++.++. .|..+++|++|+|++|.++.+++..+..++.|+.+             +...+.+...+ ..+
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~L~~n~l~~l~~~~~  137 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL-------------VLERNDLSSLPRGIF  137 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-------------ECCSSCCCCCCTTTT
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE-------------ECCCCccCcCCHHHh
Confidence            5677777777776653 67777777777777777777776666666666654             22222222222 224


Q ss_pred             CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCc
Q psy12423         79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK  156 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~  156 (567)
                      ..+++|++|++++|.++...  .+..+++|++|++++|.++.+++..+++|+.|++++|.+..+. ...+|+.|++++|.
T Consensus       138 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~L~~L~l~~n~  216 (390)
T 3o6n_A          138 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNS  216 (390)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEECCSSCCSEEE-CCSSCSEEECCSSC
T ss_pred             cCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeecccccccccC-CCCcceEEECCCCe
Confidence            66778888888888777654  4677778888888888887777777788888888888777654 33578888888888


Q ss_pred             cccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhC
Q psy12423        157 LQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ  236 (567)
Q Consensus       157 l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  236 (567)
                      ++.++.. .+++|+.|++++|.++.+ .++..+++|++|++++|.++.+++..+.. +++|++|+|++|+++.+|..+..
T Consensus       217 l~~~~~~-~~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~  293 (390)
T 3o6n_A          217 INVVRGP-VNVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVALNLYGQP  293 (390)
T ss_dssp             CCEEECC-CCSSCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECCSSCCCEEECSSSC
T ss_pred             eeecccc-ccccccEEECCCCCCccc-HHHcCCCCccEEECCCCcCCCcChhHccc-cccCCEEECCCCcCcccCcccCC
Confidence            8877543 357899999999988876 46888899999999999998776555554 88999999999999988887788


Q ss_pred             CCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       237 l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      +++|++|+|++|.++.+|..+ ..+++|+.|++++|+|+.+|  ...++.|..+++..|.+.+.
T Consensus       294 l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~N~i~~~~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          294 IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCCEEECCCCcceecCccc-cccCcCCEEECCCCccceeC--chhhccCCEEEcCCCCccch
Confidence            899999999999999888764 57889999999999998887  45666777777777776543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.97  E-value=8.8e-30  Score=271.07  Aligned_cols=287  Identities=19%  Similarity=0.233  Sum_probs=215.8

Q ss_pred             CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCC-CCChhhhccCcCchhhhhhccchhhccccccccCCccc-ccCC
Q psy12423          1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRIS-HLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV-ERRE   77 (567)
Q Consensus         1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~-~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~   77 (567)
                      |++|+|++|.|+.+ |..|.++++|++|+|++|.+. .+++..+.+++.|+.+             +...+.+.. .+..
T Consensus        32 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L-------------~Ls~n~l~~~~~~~   98 (455)
T 3v47_A           32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL-------------KLDYNQFLQLETGA   98 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE-------------ECTTCTTCEECTTT
T ss_pred             cCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE-------------eCCCCccCccChhh
Confidence            68999999999977 678999999999999999987 5777777778877766             222333322 2456


Q ss_pred             CCCCCCccEEEecCCCCCCcc----ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccceec-------
Q psy12423         78 PEVKGELTSVNLRSNQLKGTI----ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLVL-------  142 (567)
Q Consensus        78 ~~~l~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~~-------  142 (567)
                      +..+++|++|+|++|.+++..    .+..+++|++|++++|.++.+.    +..+++|++|++++|.+.....       
T Consensus        99 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~  178 (455)
T 3v47_A           99 FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQ  178 (455)
T ss_dssp             TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGT
T ss_pred             ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccc
Confidence            777889999999999888632    3788889999999999888762    5678889999999888776532       


Q ss_pred             -------------------------------CCCCCcEEEcCCCccccccCCC---------------------------
Q psy12423        143 -------------------------------NGSSLISVIAGNNKLQSLIVSP---------------------------  164 (567)
Q Consensus       143 -------------------------------~~~~L~~L~l~~n~l~~~~~~~---------------------------  164 (567)
                                                     ..++|+.|++++|.+++..+..                           
T Consensus       179 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~  258 (455)
T 3v47_A          179 GKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH  258 (455)
T ss_dssp             TCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred             cccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccch
Confidence                                           1145666666666554321110                           


Q ss_pred             ----------C----CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423        165 ----------R----PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS  229 (567)
Q Consensus       165 ----------~----~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  229 (567)
                                +    .++|++|++++|.+..+ |.++..+++|++|+|++|.++.++...+.. +++|++|+|++|.+++
T Consensus       259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~  337 (455)
T 3v47_A          259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWG-LTHLLKLNLSQNFLGS  337 (455)
T ss_dssp             CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTT-CTTCCEEECCSSCCCE
T ss_pred             hhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcC-cccCCEEECCCCccCC
Confidence                      0    24677777777777754 567888888888888888888776666554 7888888888888887


Q ss_pred             C-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccCC
Q psy12423        230 L-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNSD  301 (567)
Q Consensus       230 l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~~  301 (567)
                      + |..+..+++|++|+|++|.|+.+++..|..+++|++|+|++|+|+.+|... ..+++|..+++..|.+.+.+
T Consensus       338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~  411 (455)
T 3v47_A          338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  411 (455)
T ss_dssp             ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred             cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCC
Confidence            5 456788888888888888888887777788888888888888888888754 46777888888877776553

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.97  E-value=2.7e-29  Score=269.17  Aligned_cols=292  Identities=18%  Similarity=0.207  Sum_probs=246.6

Q ss_pred             CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc-CCC
Q psy12423          1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER-REP   78 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~   78 (567)
                      |++|+|++|.|+.++ ..|.++++|++|+|++|.|+.+++..+.+++.|+.+             +...+.+...+ ..+
T Consensus        34 l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L-------------~L~~n~l~~~~~~~~  100 (477)
T 2id5_A           34 TRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTL-------------GLRSNRLKLIPLGVF  100 (477)
T ss_dssp             CSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE-------------ECCSSCCCSCCTTSS
T ss_pred             CcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEE-------------ECCCCcCCccCcccc
Confidence            578999999999884 679999999999999999998877777778877766             22222232222 346


Q ss_pred             CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccccee----cCCCCCcE
Q psy12423         79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLV----LNGSSLIS  149 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~  149 (567)
                      ..+++|++|+|++|.+....  .+..+++|++|++++|.+..+   .+..+++|++|++++|.++.++    ..+++|+.
T Consensus       101 ~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  180 (477)
T 2id5_A          101 TGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIV  180 (477)
T ss_dssp             TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCE
T ss_pred             cCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcE
Confidence            78899999999999998764  688899999999999999876   3778899999999999998875    46789999


Q ss_pred             EEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC
Q psy12423        150 VIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR  226 (567)
Q Consensus       150 L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~  226 (567)
                      |++++|.+..+....+  +++|++|++++|.+. .+|..+....+|+.|+|++|.++.+|...+.. +++|+.|+|++|.
T Consensus       181 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~  259 (477)
T 2id5_A          181 LRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRH-LVYLRFLNLSYNP  259 (477)
T ss_dssp             EEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTT-CTTCCEEECCSSC
T ss_pred             EeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcC-ccccCeeECCCCc
Confidence            9999999999887766  889999999998655 66766666679999999999999999877766 9999999999999


Q ss_pred             CCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccCCcce
Q psy12423        227 LTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNSDALI  304 (567)
Q Consensus       227 l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~~~~~  304 (567)
                      ++.++. .+..+++|+.|+|++|.++.+++..|..+++|+.|+|++|+|+.+|+.. ..+.+|..+++..|.+.+.+.+.
T Consensus       260 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~  339 (477)
T 2id5_A          260 ISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLL  339 (477)
T ss_dssp             CCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGH
T ss_pred             CCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchH
Confidence            998664 5789999999999999999998888899999999999999999999765 46788999999999888776554


Q ss_pred             ee
Q psy12423        305 GI  306 (567)
Q Consensus       305 ~~  306 (567)
                      .+
T Consensus       340 ~~  341 (477)
T 2id5_A          340 WV  341 (477)
T ss_dssp             HH
T ss_pred             hH
Confidence            33

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.96  E-value=1.7e-28  Score=270.25  Aligned_cols=280  Identities=19%  Similarity=0.198  Sum_probs=231.1

Q ss_pred             CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc-CCC
Q psy12423          1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER-REP   78 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~-~~~   78 (567)
                      |++|+|++|.|+.+|. .|..+++|++|+|++|.|+.+|+..+..++.|+.+             +...+.+...+ ..+
T Consensus        77 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~L~~n~l~~l~~~~~  143 (597)
T 3oja_B           77 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL-------------VLERNDLSSLPRGIF  143 (597)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE-------------ECCSSCCCCCCTTTT
T ss_pred             CcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE-------------EeeCCCCCCCCHHHh
Confidence            6788888888887764 78888889999999888888888777777777765             22223333222 335


Q ss_pred             CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCc
Q psy12423         79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK  156 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~  156 (567)
                      ..+++|++|+|++|.+++..  .+..+++|++|++++|.++.++++.+++|+.|++++|.+..+. ...+|+.|++++|.
T Consensus       144 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~l~~l~-~~~~L~~L~ls~n~  222 (597)
T 3oja_B          144 HNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLA-IPIAVEELDASHNS  222 (597)
T ss_dssp             TTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSCCSEEE-CCTTCSEEECCSSC
T ss_pred             ccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCcccccc-CCchhheeeccCCc
Confidence            77889999999999888765  5788889999999999998888888899999999999888764 34679999999999


Q ss_pred             cccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhC
Q psy12423        157 LQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ  236 (567)
Q Consensus       157 l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  236 (567)
                      ++.++... +++|+.|+|++|.++.. .++..+++|+.|+|++|.++.+++..+.. +++|+.|+|++|.++.+|..+..
T Consensus       223 l~~~~~~~-~~~L~~L~L~~n~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~~~  299 (597)
T 3oja_B          223 INVVRGPV-NVELTILKLQHNNLTDT-AWLLNYPGLVEVDLSYNELEKIMYHPFVK-MQRLERLYISNNRLVALNLYGQP  299 (597)
T ss_dssp             CCEEECSC-CSCCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCEEESGGGTT-CSSCCEEECTTSCCCEEECSSSC
T ss_pred             cccccccc-CCCCCEEECCCCCCCCC-hhhccCCCCCEEECCCCccCCCCHHHhcC-ccCCCEEECCCCCCCCCCccccc
Confidence            88776543 57899999999999875 56889999999999999999876666655 89999999999999999888888


Q ss_pred             CCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       237 l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      +++|+.|+|++|.++.+|..+ ..+++|+.|+|++|+|+.+|  ...++.|..+++..|.+.|.
T Consensus       300 l~~L~~L~Ls~N~l~~i~~~~-~~l~~L~~L~L~~N~l~~~~--~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          300 IPTLKVLDLSHNHLLHVERNQ-PQFDRLENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             CTTCCEEECCSSCCCCCGGGH-HHHTTCSEEECCSSCCCCCC--CCTTCCCSEEECCSSCEEHH
T ss_pred             CCCCcEEECCCCCCCccCccc-ccCCCCCEEECCCCCCCCcC--hhhcCCCCEEEeeCCCCCCh
Confidence            999999999999999998875 68899999999999999887  45667788888888887654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.96  E-value=6.4e-28  Score=247.41  Aligned_cols=274  Identities=18%  Similarity=0.263  Sum_probs=163.9

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |++|++++|.+..+|. +..+++|++|++++|.++.++.  +..++.|+.+          ++..+....+    ..+..
T Consensus        46 L~~L~l~~~~i~~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L----------~L~~n~i~~~----~~~~~  108 (347)
T 4fmz_A           46 ITKLVVAGEKVASIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNL----------YIGTNKITDI----SALQN  108 (347)
T ss_dssp             CSEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE----------ECCSSCCCCC----GGGTT
T ss_pred             ccEEEEeCCccccchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEE----------EccCCcccCc----hHHcC
Confidence            4667777777766653 6667777777777777776665  3445555444          1111111111    12344


Q ss_pred             CCCccEEEecCCCCCCcccc-----------------------CCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCc
Q psy12423         81 KGELTSVNLRSNQLKGTIIL-----------------------GNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQ  136 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l-----------------------~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~  136 (567)
                      +++|++|++++|.+.....+                       ..+++|++|++++|.+..++ +..+++|++|++++|.
T Consensus       109 l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~  188 (347)
T 4fmz_A          109 LTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ  188 (347)
T ss_dssp             CTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC
T ss_pred             CCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc
Confidence            45555555555555444444                       44445555555555544432 4555566666666665


Q ss_pred             cccee--cCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccC
Q psy12423        137 LKTLV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCREL  214 (567)
Q Consensus       137 l~~l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l  214 (567)
                      +..+.  ..+++|+.|++++|.++...+...+++|++|++++|.++.++. +..+++|++|++++|.++.++.  +.. +
T Consensus       189 l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~-l  264 (347)
T 4fmz_A          189 IEDISPLASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDINA--VKD-L  264 (347)
T ss_dssp             CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTT-C
T ss_pred             ccccccccCCCccceeecccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCChh--Hhc-C
Confidence            55543  3445666666666666655543336677777777777776655 6677777777777777776632  222 6


Q ss_pred             CCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccC
Q psy12423        215 GKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL  294 (567)
Q Consensus       215 ~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~  294 (567)
                      ++|++|++++|.++.++ .+..+++|+.|++++|.++.+++..+..+++|+.|++++|+++.+|+ ...++.|..+++..
T Consensus       265 ~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~  342 (347)
T 4fmz_A          265 TKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-LASLSKMDSADFAN  342 (347)
T ss_dssp             TTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-GGGCTTCSEESSSC
T ss_pred             CCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-hhhhhccceeehhh
Confidence            77777777777777764 36667777777777777777766666777777777777777776665 55566666666665


Q ss_pred             Ccc
Q psy12423        295 PGF  297 (567)
Q Consensus       295 ~~~  297 (567)
                      |.+
T Consensus       343 N~i  345 (347)
T 4fmz_A          343 QVI  345 (347)
T ss_dssp             C--
T ss_pred             hcc
Confidence            543

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.96  E-value=5.2e-28  Score=264.61  Aligned_cols=281  Identities=19%  Similarity=0.162  Sum_probs=187.2

Q ss_pred             CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|.|+.+| ..|.++++|++|+|++|.|+++++..+..++.|+.+             +...+.+...+..  
T Consensus        54 L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L-------------~Ls~N~l~~lp~~--  118 (562)
T 3a79_B           54 TKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL-------------DVSHNRLQNISCC--  118 (562)
T ss_dssp             CCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE-------------ECTTSCCCEECSC--
T ss_pred             cCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE-------------ECCCCcCCccCcc--
Confidence            578888888888776 478888888888888888888776666677777665             2222223222222  


Q ss_pred             CCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCCCcccccC--cEEEcccCcc--ccee----cC-----
Q psy12423         80 VKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGALNRL--ESIKCSRNQL--KTLV----LN-----  143 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~l~~L--~~L~ls~n~l--~~l~----~~-----  143 (567)
                      .+++|++|+|++|+++...   .+.++++|++|++++|.++...+..+++|  ++|++++|.+  ....    ..     
T Consensus       119 ~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~  198 (562)
T 3a79_B          119 PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTV  198 (562)
T ss_dssp             CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEE
T ss_pred             ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcce
Confidence            6778888888888887632   57778888888888888877666666666  7777776655  1110    00     


Q ss_pred             ----------------------------------------------------------------------------CCCC
Q psy12423        144 ----------------------------------------------------------------------------GSSL  147 (567)
Q Consensus       144 ----------------------------------------------------------------------------~~~L  147 (567)
                                                                                                  ..+|
T Consensus       199 l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L  278 (562)
T 3a79_B          199 LHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPV  278 (562)
T ss_dssp             EEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSE
T ss_pred             EEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccc
Confidence                                                                                        0144


Q ss_pred             cEEEcCCCcccc-ccCC------------------------------------------------------CCCCcccEE
Q psy12423        148 ISVIAGNNKLQS-LIVS------------------------------------------------------PRPARLQHL  172 (567)
Q Consensus       148 ~~L~l~~n~l~~-~~~~------------------------------------------------------~~~~~L~~L  172 (567)
                      +.|++++|.+++ ++..                                                      ..+++|++|
T Consensus       279 ~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L  358 (562)
T 3a79_B          279 EYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFL  358 (562)
T ss_dssp             EEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred             cEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEE
Confidence            455555554442 1111                                                      225678888


Q ss_pred             ecccCCCCC-cccccCCCcCCcEEECcCCCCCCCCh--hhhhccCCCccEEECCCCCCCC-Cchh-hhCCCCCcEEEccC
Q psy12423        173 DISYNELES-LPDWIDTCPELETIFASHNRITQLPS--QFFCRELGKLHTLQLSFNRLTS-LPSL-IRQIASLKYLFLQS  247 (567)
Q Consensus       173 ~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~~~l~~L~~L~Ls~  247 (567)
                      ++++|.++. +|.++..+++|+.|++++|+++.++.  ..+.. +++|++|+|++|.++. +|.. +..+++|++|++++
T Consensus       359 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~  437 (562)
T 3a79_B          359 NFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKN-MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS  437 (562)
T ss_dssp             ECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTT-CTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred             ECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcC-CCCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence            888888875 56778888888888888888887764  22333 7788888888888876 6653 56677777777777


Q ss_pred             CCCCCCchhhhcCC-CCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        248 NSINILPQLFLQNS-SKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       248 N~l~~l~~~~l~~l-~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      |.+++..+.   .+ ++|+.|+|++|+|+.||...++++.|..+++..|.+...
T Consensus       438 n~l~~~~~~---~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l  488 (562)
T 3a79_B          438 NMLTGSVFR---CLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVASNQLKSV  488 (562)
T ss_dssp             SCCCGGGGS---SCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECCSSCCCCC
T ss_pred             CCCCcchhh---hhcCcCCEEECCCCcCcccChhhcCCCCCCEEECCCCCCCCC
Confidence            777643322   22 577777777777777777666666776666666666544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=5.1e-27  Score=239.11  Aligned_cols=257  Identities=18%  Similarity=0.197  Sum_probs=147.3

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccc-cCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVE-RREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~   79 (567)
                      |+.++++++.++.+|..+.  ++|++|+|++|.|+.++...+..++.|+.+             +...+.+... +..+.
T Consensus        33 l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L-------------~L~~n~l~~~~~~~~~   97 (330)
T 1xku_A           33 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTL-------------ILINNKISKISPGAFA   97 (330)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEE-------------ECCSSCCCCBCTTTTT
T ss_pred             CeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEE-------------ECCCCcCCeeCHHHhc
Confidence            5678888888888887654  678888998888888877655555555443             1111112111 23445


Q ss_pred             CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccce--e----cCCCCCcEE
Q psy12423         80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTL--V----LNGSSLISV  150 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l--~----~~~~~L~~L  150 (567)
                      .+++|++|++++|+++.... .-.++|++|++++|.++.++   +..+++|++|++++|.+...  .    ..+++|+.|
T Consensus        98 ~l~~L~~L~Ls~n~l~~l~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A           98 PLVKLERLYLSKNQLKELPE-KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             TCTTCCEEECCSSCCSBCCS-SCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCCCCCEEECCCCcCCccCh-hhcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence            55566666666666554331 11245666666666665543   44555666666666655431  1    234556666


Q ss_pred             EcCCCccccccCCCCCCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423        151 IAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS  229 (567)
Q Consensus       151 ~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  229 (567)
                      ++++|.++.++... .++|++|++++|.++.+ |..+..+++|+.|++++|.++.++...+.. +++|++|+|++|.++.
T Consensus       177 ~l~~n~l~~l~~~~-~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~  254 (330)
T 1xku_A          177 RIADTNITTIPQGL-PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLVK  254 (330)
T ss_dssp             ECCSSCCCSCCSSC-CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCSS
T ss_pred             ECCCCccccCCccc-cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC-CCCCCEEECCCCcCcc
Confidence            66666665544322 35566666666666544 345556666666666666666555444433 5566666666666666


Q ss_pred             CchhhhCCCCCcEEEccCCCCCCCchhhhcC------CCCCcEEEccCCcCC
Q psy12423        230 LPSLIRQIASLKYLFLQSNSINILPQLFLQN------SSKLKVLNISKNCLK  275 (567)
Q Consensus       230 lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~------l~~L~~L~Ls~N~l~  275 (567)
                      +|..+..+++|++|++++|.|+.++...|..      .+.|+.|++++|++.
T Consensus       255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~  306 (330)
T 1xku_A          255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  306 (330)
T ss_dssp             CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCccc
Confidence            6655556666666666666666655554432      245556666666654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.96  E-value=1.3e-27  Score=256.14  Aligned_cols=262  Identities=19%  Similarity=0.240  Sum_probs=227.1

Q ss_pred             CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccc-ccCCC
Q psy12423          1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV-ERREP   78 (567)
Q Consensus         1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~   78 (567)
                      |++|+|++|.|+.+ |..|.++++|++|+|++|.++.+|...+.+++.|+.+             +...+.+.. .+..+
T Consensus        58 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~Ls~n~i~~~~~~~~  124 (477)
T 2id5_A           58 LEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKL-------------DISENKIVILLDYMF  124 (477)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEE-------------ECTTSCCCEECTTTT
T ss_pred             CCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEE-------------ECCCCccccCChhHc
Confidence            78999999999977 6789999999999999999999999888888888766             222222222 23567


Q ss_pred             CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcE
Q psy12423         79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLIS  149 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~  149 (567)
                      ..+++|++|+|++|.+....  .+..+++|++|++++|.++.++   +..+++|+.|++++|.+..+.    ..+++|+.
T Consensus       125 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~  204 (477)
T 2id5_A          125 QDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKV  204 (477)
T ss_dssp             TTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCE
T ss_pred             cccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccce
Confidence            78999999999999998765  6889999999999999999876   678999999999999998875    35789999


Q ss_pred             EEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC
Q psy12423        150 VIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR  226 (567)
Q Consensus       150 L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~  226 (567)
                      |++++|......+...  ..+|++|+|++|.++.+|. .+..+++|+.|+|++|.++.++...+.. +++|+.|+|++|.
T Consensus       205 L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~  283 (477)
T 2id5_A          205 LEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHE-LLRLQEIQLVGGQ  283 (477)
T ss_dssp             EEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTT-CTTCCEEECCSSC
T ss_pred             eeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccc-cccCCEEECCCCc
Confidence            9999987655444333  5699999999999999984 7899999999999999999998887766 9999999999999


Q ss_pred             CCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423        227 LTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM  276 (567)
Q Consensus       227 l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~  276 (567)
                      ++.+ |..+..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|++..
T Consensus       284 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          284 LAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             CSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred             cceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccC
Confidence            9985 6688999999999999999999999999999999999999999873

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.2e-27  Score=259.08  Aligned_cols=162  Identities=20%  Similarity=0.151  Sum_probs=104.7

Q ss_pred             CCcccEEecccCCCCC-cccccCCCcCCcEEECcCCCCCCCCh--hhhhccCCCccEEECCCCCCCC-Cchh-hhCCCCC
Q psy12423        166 PARLQHLDISYNELES-LPDWIDTCPELETIFASHNRITQLPS--QFFCRELGKLHTLQLSFNRLTS-LPSL-IRQIASL  240 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~Ls~N~l~~-lp~~-~~~l~~L  240 (567)
                      +++|++|++++|.++. +|.++..+++|++|++++|+++.++.  ..+.. +++|++|+|++|.++. +|.. +..+++|
T Consensus       323 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~-l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L  401 (520)
T 2z7x_B          323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQ-MKSLQQLDISQNSVSYDEKKGDCSWTKSL  401 (520)
T ss_dssp             CCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTT-CTTCCEEECCSSCCBCCGGGCSCCCCTTC
T ss_pred             CCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhh-CCCCCEEECCCCcCCcccccchhccCccC
Confidence            5678888888888875 57777888888888888888876543  22333 7788888888888877 7764 5667777


Q ss_pred             cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccCCc--c-----eeeccCCCCc
Q psy12423        241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDA--L-----IGIFDSGDNG  313 (567)
Q Consensus       241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~--~-----~~~~dg~~~~  313 (567)
                      ++|++++|.+++..+..+  .++|+.|++++|+|+.+|..+..++.|..+++..|.+...+.  +     ...++-.++.
T Consensus       402 ~~L~Ls~N~l~~~~~~~l--~~~L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~  479 (520)
T 2z7x_B          402 LSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIKSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNP  479 (520)
T ss_dssp             CEEECCSSCCCGGGGGSC--CTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             CEEECcCCCCCcchhhhh--cccCCEEECCCCcccccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCC
Confidence            777777777764332221  157777777777777777766666677776666666654422  1     1123334555


Q ss_pred             hhhhHHhhhh-HHHHHhh
Q psy12423        314 DIASTLVQSI-PRILLEE  330 (567)
Q Consensus       314 ~is~~l~~~l-P~~l~~~  330 (567)
                      ..+.+-..++ ..|+.+.
T Consensus       480 ~~c~c~~~~~~~~~~~~~  497 (520)
T 2z7x_B          480 WDCSCPRIDYLSRWLNKN  497 (520)
T ss_dssp             BCCCHHHHHHHHHHHHHT
T ss_pred             CcccCCchHHHHHHHHhc
Confidence            5555544555 5555443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.95  E-value=1.3e-27  Score=254.39  Aligned_cols=267  Identities=20%  Similarity=0.235  Sum_probs=217.0

Q ss_pred             CcEEEccCCCCC-cCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCC
Q psy12423          1 LQEFRVDRNDLT-EFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREP   78 (567)
Q Consensus         1 L~~L~Ls~n~l~-~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~   78 (567)
                      |++|+|++|.+. .++ ..|.++++|++|+|++|.++.+++..+..++.|+.+          ++..+...+.......+
T Consensus        56 L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L----------~L~~n~l~~~~~~~~~~  125 (455)
T 3v47_A           56 LQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL----------TLTQCNLDGAVLSGNFF  125 (455)
T ss_dssp             CCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE----------ECTTSCCBTHHHHSSTT
T ss_pred             ccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE----------eCCCCCCCccccCcccc
Confidence            789999999987 664 579999999999999999998766666777777765          22222222222223446


Q ss_pred             CCCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCC---Cc------------------------------
Q psy12423         79 EVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLD---LG------------------------------  122 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~---~~------------------------------  122 (567)
                      ..+++|++|+|++|.+++..   .+..+++|++|++++|.++.+.   +.                              
T Consensus       126 ~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~  205 (455)
T 3v47_A          126 KPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKC  205 (455)
T ss_dssp             TTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHH
T ss_pred             cCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhcccccc
Confidence            77888999999998888764   2778888899998888877642   22                              


Q ss_pred             ----ccccCcEEEcccCcccceec-------------------------------------------CCCCCcEEEcCCC
Q psy12423        123 ----ALNRLESIKCSRNQLKTLVL-------------------------------------------NGSSLISVIAGNN  155 (567)
Q Consensus       123 ----~l~~L~~L~ls~n~l~~l~~-------------------------------------------~~~~L~~L~l~~n  155 (567)
                          .+++|++|++++|.+.....                                           ..++|+.|++++|
T Consensus       206 ~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n  285 (455)
T 3v47_A          206 GNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKS  285 (455)
T ss_dssp             CCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSS
T ss_pred             ccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCc
Confidence                23678999999997753210                                           1258999999999


Q ss_pred             ccccccCCCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-c
Q psy12423        156 KLQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-P  231 (567)
Q Consensus       156 ~l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p  231 (567)
                      .++...+..+  +++|++|+|++|.++.+ |..|..+++|++|+|++|.++.++...+.. +++|++|+|++|.++.+ |
T Consensus       286 ~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~  364 (455)
T 3v47_A          286 KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFEN-LDKLEVLDLSYNHIRALGD  364 (455)
T ss_dssp             CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTT-CTTCCEEECCSSCCCEECT
T ss_pred             cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcC-cccCCEEECCCCcccccCh
Confidence            9999887766  89999999999999977 568999999999999999999988777765 99999999999999986 6


Q ss_pred             hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC-CC
Q psy12423        232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM-LP  278 (567)
Q Consensus       232 ~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~-ip  278 (567)
                      ..+..+++|++|+|++|+|+.+|+..+..+++|+.|++++|+++. +|
T Consensus       365 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            789999999999999999999999988999999999999999984 44

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=6.6e-28  Score=266.07  Aligned_cols=164  Identities=21%  Similarity=0.231  Sum_probs=86.7

Q ss_pred             CCcccEEecccCCCCCcc--cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC--CchhhhCCCCCc
Q psy12423        166 PARLQHLDISYNELESLP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS--LPSLIRQIASLK  241 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~  241 (567)
                      +++|+.|++++|.+..++  ..+..+++|++|++++|.+....+..+.. +++|++|++++|.+++  +|..+..+++|+
T Consensus       398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG-LTSLNTLKMAGNSFKDNTLSNVFANTTNLT  476 (606)
T ss_dssp             CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred             CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcC-CCCCCEEECCCCcCCCcchHHhhccCCCCC
Confidence            445555555555554332  24455555555555555555433333332 5556666666665554  455556666666


Q ss_pred             EEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCC-CCCCcCCccceeecccCCccccCCc-c------eeeccCCCCc
Q psy12423        242 YLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML-PSLQKGFYLLNISQLRLPGFCNSDA-L------IGIFDSGDNG  313 (567)
Q Consensus       242 ~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i-p~~~~~~~~L~~~~l~~~~~~~~~~-~------~~~~dg~~~~  313 (567)
                      +|+|++|.++.+++..+..+++|+.|+|++|+++.+ |..+.++++|..+++..|.+...+. +      ...++-.++.
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~p~~~~~l~~~L~~l~l~~N~  556 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNS  556 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCCEESCGGGSCTTCCEEECCSCC
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcccCHhHhhhcccCcEEEccCCC
Confidence            666666666666555556666666666666666654 4444455556666665555543311 1      1122334444


Q ss_pred             hhhhHHhhhhHHHHHhh
Q psy12423        314 DIASTLVQSIPRILLEE  330 (567)
Q Consensus       314 ~is~~l~~~lP~~l~~~  330 (567)
                      ..+.+-..++..|+...
T Consensus       557 ~~c~c~~~~~~~~l~~~  573 (606)
T 3vq2_A          557 VACICEHQKFLQWVKEQ  573 (606)
T ss_dssp             CCCSSTTHHHHTTTTTS
T ss_pred             cccCCccHHHHHHHHcC
Confidence            44444445555555443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=4.7e-27  Score=239.62  Aligned_cols=257  Identities=18%  Similarity=0.213  Sum_probs=126.2

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccc-cCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVE-RREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~   79 (567)
                      |+.++++++.++.+|..+.  ++|+.|+|++|.|+.+++..+..++.|+.+             +...+.+... +..+.
T Consensus        35 l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L-------------~L~~n~l~~~~~~~~~   99 (332)
T 2ft3_A           35 LRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYAL-------------VLVNNKISKIHEKAFS   99 (332)
T ss_dssp             TTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEE-------------ECCSSCCCEECGGGST
T ss_pred             CCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEE-------------ECCCCccCccCHhHhh
Confidence            3566666666666665443  466666666666666655444444444433             1111111111 23334


Q ss_pred             CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccce--ec---CCCCCcEEE
Q psy12423         80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTL--VL---NGSSLISVI  151 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l--~~---~~~~L~~L~  151 (567)
                      .+++|++|++++|.++.... .-.++|++|++++|.++.++   +..+++|++|++++|.++..  ..   ...+|+.|+
T Consensus       100 ~l~~L~~L~L~~n~l~~l~~-~~~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~  178 (332)
T 2ft3_A          100 PLRKLQKLYISKNHLVEIPP-NLPSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLR  178 (332)
T ss_dssp             TCTTCCEEECCSSCCCSCCS-SCCTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCB
T ss_pred             CcCCCCEEECCCCcCCccCc-cccccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEE
Confidence            45555555555555543321 11145555555555555443   34455555555555555321  10   011455555


Q ss_pred             cCCCccccccCCCCCCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423        152 AGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL  230 (567)
Q Consensus       152 l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l  230 (567)
                      +++|.++.++... .++|++|++++|.++.++ ..+..+++|+.|++++|.++.++...+.. +++|++|+|++|+++.+
T Consensus       179 l~~n~l~~l~~~~-~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l  256 (332)
T 2ft3_A          179 ISEAKLTGIPKDL-PETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF-LPTLRELHLDNNKLSRV  256 (332)
T ss_dssp             CCSSBCSSCCSSS-CSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG-CTTCCEEECCSSCCCBC
T ss_pred             CcCCCCCccCccc-cCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC-CCCCCEEECCCCcCeec
Confidence            5555555443322 245555555555555443 34555555555555555555554443333 55555555555555555


Q ss_pred             chhhhCCCCCcEEEccCCCCCCCchhhhcC------CCCCcEEEccCCcCC
Q psy12423        231 PSLIRQIASLKYLFLQSNSINILPQLFLQN------SSKLKVLNISKNCLK  275 (567)
Q Consensus       231 p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~------l~~L~~L~Ls~N~l~  275 (567)
                      |..+..+++|++|++++|.|+.++...|..      .+.|+.|++++|++.
T Consensus       257 p~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~  307 (332)
T 2ft3_A          257 PAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVP  307 (332)
T ss_dssp             CTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSC
T ss_pred             ChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCccc
Confidence            555555555555555555555555444432      234555555555554

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=7.3e-28  Score=267.02  Aligned_cols=279  Identities=20%  Similarity=0.215  Sum_probs=148.4

Q ss_pred             CcEEEccCCCCCc------------------CCccCC--CCCCCCEEeCcCCCCCC-CChhhhccCcCchhhhhhccchh
Q psy12423          1 LQEFRVDRNDLTE------------------FPGNQD--SFPRLKFLSAAQNRISH-LPVFLRHPMSPLNNVIEHGIAEE   59 (567)
Q Consensus         1 L~~L~Ls~n~l~~------------------lp~~~~--~l~~L~~L~Ls~n~i~~-lp~~~~~~L~~L~~l~~~~~~~~   59 (567)
                      |++|+|++|.++.                  +|+.++  ++++|++|+|++|.+.+ +|..+ ..++.|+.+.       
T Consensus       208 L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~-------  279 (636)
T 4eco_A          208 LRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFL-KALPEMQLIN-------  279 (636)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTT-TTCSSCCEEE-------
T ss_pred             CCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHH-hcCCCCCEEE-------
Confidence            7899999999997                  999998  99999999999999775 77554 4566666541       


Q ss_pred             hccccccc-cCCcccccCCCC------CCCCccEEEecCCCCCCccc---cCCCCCccEEEccCCCCC-CCC-CcccccC
Q psy12423         60 REEDFEQD-EDGIIVERREPE------VKGELTSVNLRSNQLKGTII---LGNYGNLTTLDVSENSIE-SLD-LGALNRL  127 (567)
Q Consensus        60 ~~~~~~~~-~~~l~~~~~~~~------~l~~L~~L~Ls~n~l~~~~~---l~~l~~L~~L~L~~n~l~-~~~-~~~l~~L  127 (567)
                         +..+. ..+. ..+..+.      .+++|++|++++|+++..+.   ++.+++|++|++++|.++ .++ +..+++|
T Consensus       280 ---Ls~n~~l~~~-~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L  355 (636)
T 4eco_A          280 ---VACNRGISGE-QLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKL  355 (636)
T ss_dssp             ---CTTCTTSCHH-HHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEE
T ss_pred             ---CcCCCCCccc-cchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCC
Confidence               11111 1110 0011111      12456666666666554332   555556666666666555 332 4445555


Q ss_pred             cEEEcccCcccceec---CCCC-CcEEEcCCCccccccCCCC---CCcccEEecccCCCCC-cccccC-------CCcCC
Q psy12423        128 ESIKCSRNQLKTLVL---NGSS-LISVIAGNNKLQSLIVSPR---PARLQHLDISYNELES-LPDWID-------TCPEL  192 (567)
Q Consensus       128 ~~L~ls~n~l~~l~~---~~~~-L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~-lp~~l~-------~l~~L  192 (567)
                      ++|++++|.+..++.   .+++ |+.|++++|.++.++....   +++|++|++++|.++. +|..+.       .+++|
T Consensus       356 ~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L  435 (636)
T 4eco_A          356 ASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINV  435 (636)
T ss_dssp             SEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCE
T ss_pred             CEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCC
Confidence            555555555554432   2334 5555555555554433211   2245555555555542 333444       44455


Q ss_pred             cEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhC-C-------CCCcEEEccCCCCCCCchhhh-cCCCC
Q psy12423        193 ETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ-I-------ASLKYLFLQSNSINILPQLFL-QNSSK  263 (567)
Q Consensus       193 ~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~-l-------~~L~~L~Ls~N~l~~l~~~~l-~~l~~  263 (567)
                      ++|+|++|.++.+|..++.. +++|++|+|++|.++.+|..+.. .       ++|+.|+|++|.|+.+|..++ ..+++
T Consensus       436 ~~L~Ls~N~l~~lp~~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~  514 (636)
T 4eco_A          436 SSINLSNNQISKFPKELFST-GSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPY  514 (636)
T ss_dssp             EEEECCSSCCCSCCTHHHHT-TCCCSEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTT
T ss_pred             CEEECcCCccCcCCHHHHcc-CCCCCEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCCccChhhhhccCCC
Confidence            55555555555555554443 45555555555555554442211 1       145555555555555554432 24555


Q ss_pred             CcEEEccCCcCCCCCCCCcCCccceeecc
Q psy12423        264 LKVLNISKNCLKMLPSLQKGFYLLNISQL  292 (567)
Q Consensus       264 L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l  292 (567)
                      |+.|+|++|+|+.+|..+..+..|+.+++
T Consensus       515 L~~L~Ls~N~l~~ip~~~~~l~~L~~L~L  543 (636)
T 4eco_A          515 LVGIDLSYNSFSKFPTQPLNSSTLKGFGI  543 (636)
T ss_dssp             CCEEECCSSCCSSCCCGGGGCSSCCEEEC
T ss_pred             cCEEECCCCCCCCcChhhhcCCCCCEEEC
Confidence            55555555555555555444444444444

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1.3e-26  Score=247.60  Aligned_cols=213  Identities=20%  Similarity=0.331  Sum_probs=126.4

Q ss_pred             CCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCccccee--cCCCCCcEEEcCCC
Q psy12423         79 EVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNN  155 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n  155 (567)
                      ..+++|++|++++|.+.....+..+++|++|++++|.+..+ +++.+++|+.|++++|.+..+.  ..+++|+.|++++|
T Consensus       174 ~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          174 ANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANN  253 (466)
T ss_dssp             TTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSS
T ss_pred             ccCCCCCEEECcCCcCCCChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCC
Confidence            34555555666665555544555555666666666655554 3455556666666666655443  34556666666666


Q ss_pred             ccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhh
Q psy12423        156 KLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR  235 (567)
Q Consensus       156 ~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  235 (567)
                      .++...+...+++|++|++++|.++.++. +..+++|+.|++++|+++.++.  +.. +++|+.|+|++|++++++. +.
T Consensus       254 ~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~-l~~L~~L~L~~n~l~~~~~-~~  328 (466)
T 1o6v_A          254 QISNLAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISN-LKNLTYLTLYFNNISDISP-VS  328 (466)
T ss_dssp             CCCCCGGGTTCTTCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGG-CTTCSEEECCSSCCSCCGG-GG
T ss_pred             ccccchhhhcCCCCCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcC-CCCCCEEECcCCcCCCchh-hc
Confidence            66665553335666666666666665554 5566666666666666666554  222 6666666666666666554 55


Q ss_pred             CCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcccc
Q psy12423        236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCN  299 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~  299 (567)
                      .+++|+.|++++|.+++++.  +.++++|+.|++++|+++.+++ ...++.|..+++..+.+.+
T Consensus       329 ~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          329 SLTKLQRLFFYNNKVSDVSS--LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCGG-GTTCTTCCEEECCCEEEEC
T ss_pred             cCccCCEeECCCCccCCchh--hccCCCCCEEeCCCCccCccch-hhcCCCCCEEeccCCcccC
Confidence            66666666666666666642  4566666666666666665554 4555566666665555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.95  E-value=2.2e-27  Score=247.56  Aligned_cols=278  Identities=22%  Similarity=0.253  Sum_probs=233.9

Q ss_pred             CcEEEccCCCCCcCCcc-CCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccc-cCCC
Q psy12423          1 LQEFRVDRNDLTEFPGN-QDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVE-RREP   78 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~   78 (567)
                      |++|++++|.++.+|.. |..+++|++|+|++|.++.+++..+..++.|+.+             +...+.+... +..+
T Consensus        47 l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L-------------~L~~n~l~~~~~~~~  113 (390)
T 3o6n_A           47 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL-------------YMGFNAIRYLPPHVF  113 (390)
T ss_dssp             CSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEE-------------ECCSSCCCCCCTTTT
T ss_pred             ceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEE-------------ECCCCCCCcCCHHHh
Confidence            57899999999999875 7889999999999999999888777778887766             2222333222 2456


Q ss_pred             CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee-cCCCCCcEEEc
Q psy12423         79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV-LNGSSLISVIA  152 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~-~~~~~L~~L~l  152 (567)
                      ..+++|++|+|++|.++...  .+..+++|++|++++|.++.++   +..+++|++|++++|.++.+. ..+++|+.|++
T Consensus       114 ~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~L~~L~l  193 (390)
T 3o6n_A          114 QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANV  193 (390)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCCGGGCTTCSEEEC
T ss_pred             cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccccccccccceeec
Confidence            78899999999999999766  3688999999999999998874   778899999999999998876 45789999999


Q ss_pred             CCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-c
Q psy12423        153 GNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-P  231 (567)
Q Consensus       153 ~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p  231 (567)
                      ++|.++.+..   +.+|++|++++|.+..+|..+  .++|+.|++++|.++.++ . +.. +++|++|+|++|.++++ |
T Consensus       194 ~~n~l~~~~~---~~~L~~L~l~~n~l~~~~~~~--~~~L~~L~l~~n~l~~~~-~-l~~-l~~L~~L~Ls~n~l~~~~~  265 (390)
T 3o6n_A          194 SYNLLSTLAI---PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA-W-LLN-YPGLVEVDLSYNELEKIMY  265 (390)
T ss_dssp             CSSCCSEEEC---CSSCSEEECCSSCCCEEECCC--CSSCCEEECCSSCCCCCG-G-GGG-CTTCSEEECCSSCCCEEES
T ss_pred             ccccccccCC---CCcceEEECCCCeeeeccccc--cccccEEECCCCCCcccH-H-HcC-CCCccEEECCCCcCCCcCh
Confidence            9999887643   468999999999999887643  579999999999999874 2 333 89999999999999985 6


Q ss_pred             hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       232 ~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      ..+..+++|++|+|++|.++.+|... ..+++|+.|+|++|+++.+|..+..++.|..+++..|.+...
T Consensus       266 ~~~~~l~~L~~L~L~~n~l~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          266 HPFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             GGGTTCSSCCEEECCSSCCCEEECSS-SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             hHccccccCCEEECCCCcCcccCccc-CCCCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee
Confidence            78899999999999999999988754 689999999999999999998877788888888888776544

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=5.5e-27  Score=265.60  Aligned_cols=296  Identities=22%  Similarity=0.201  Sum_probs=186.0

Q ss_pred             CcEEEccCCCCCc------------------CCccCC--CCCCCCEEeCcCCCCC-CCChhhhccCcCchhhh--hhc-c
Q psy12423          1 LQEFRVDRNDLTE------------------FPGNQD--SFPRLKFLSAAQNRIS-HLPVFLRHPMSPLNNVI--EHG-I   56 (567)
Q Consensus         1 L~~L~Ls~n~l~~------------------lp~~~~--~l~~L~~L~Ls~n~i~-~lp~~~~~~L~~L~~l~--~~~-~   56 (567)
                      |++|+|++|.|+.                  +|+.++  ++++|++|+|++|.+. .+|..+ ..++.|+.+.  .+. +
T Consensus       450 L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l-~~L~~L~~L~Ls~N~~l  528 (876)
T 4ecn_A          450 LQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFL-YDLPELQSLNIACNRGI  528 (876)
T ss_dssp             CCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGG-GGCSSCCEEECTTCTTS
T ss_pred             CCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHH-hCCCCCCEEECcCCCCc
Confidence            6899999999998                  999888  9999999999999876 477554 4566666541  111 1


Q ss_pred             ch-h----------------hccccccccCCcccccC--CCCCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCC
Q psy12423         57 AE-E----------------REEDFEQDEDGIIVERR--EPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE  117 (567)
Q Consensus        57 ~~-~----------------~~~~~~~~~~~l~~~~~--~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~  117 (567)
                      .. .                .+.......+.+...+.  .+..+++|+.|+|++|.++..+.++.+++|+.|++++|.++
T Consensus       529 sg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~~L~~L~~L~Ls~N~l~  608 (876)
T 4ecn_A          529 SAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLEAFGTNVKLTDLKLDYNQIE  608 (876)
T ss_dssp             CHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCCTTSEESEEECCSSCCS
T ss_pred             ccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccchhhcCCCcceEEECcCCccc
Confidence            11 0                11122222333333333  45566667777777776664445666667777777777666


Q ss_pred             CCC--Cccccc-CcEEEcccCcccceecC-----CCCCcEEEcCCCccccccCCCC-------CCcccEEecccCCCCCc
Q psy12423        118 SLD--LGALNR-LESIKCSRNQLKTLVLN-----GSSLISVIAGNNKLQSLIVSPR-------PARLQHLDISYNELESL  182 (567)
Q Consensus       118 ~~~--~~~l~~-L~~L~ls~n~l~~l~~~-----~~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~Ls~n~l~~l  182 (567)
                      .++  +..+++ |+.|++++|.+..++..     .++|+.|++++|.+.+..+...       +++|+.|+|++|.++.+
T Consensus       609 ~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~l  688 (876)
T 4ecn_A          609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF  688 (876)
T ss_dssp             CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSC
T ss_pred             cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCcc
Confidence            554  556666 77777777766655422     1236667777776655432211       34677777777777766


Q ss_pred             cccc-CCCcCCcEEECcCCCCCCCChhhhhcc------CCCccEEECCCCCCCCCchhhh--CCCCCcEEEccCCCCCCC
Q psy12423        183 PDWI-DTCPELETIFASHNRITQLPSQFFCRE------LGKLHTLQLSFNRLTSLPSLIR--QIASLKYLFLQSNSINIL  253 (567)
Q Consensus       183 p~~l-~~l~~L~~L~Ls~N~l~~l~~~~~~~~------l~~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~l~~l  253 (567)
                      |..+ ..+++|+.|+|++|.|+.+|...+...      +++|+.|+|++|+|+.+|..+.  .+++|+.|+|++|.|+.+
T Consensus       689 p~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~l  768 (876)
T 4ecn_A          689 PTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSF  768 (876)
T ss_dssp             CHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSC
T ss_pred             CHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCcc
Confidence            6543 366777777777777777776665420      1267777777777777776665  677777777777777776


Q ss_pred             chhhhcCCCCCcEEEccC------CcCC-CCCCCCcCCccceeecccCCccc
Q psy12423        254 PQLFLQNSSKLKVLNISK------NCLK-MLPSLQKGFYLLNISQLRLPGFC  298 (567)
Q Consensus       254 ~~~~l~~l~~L~~L~Ls~------N~l~-~ip~~~~~~~~L~~~~l~~~~~~  298 (567)
                      |..+ ..+++|+.|+|++      |++. .+|..+..+++|..+++..|.+.
T Consensus       769 p~~l-~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~  819 (876)
T 4ecn_A          769 PTQP-LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR  819 (876)
T ss_dssp             CCGG-GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCCC
T ss_pred             chhh-hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCCC
Confidence            6554 4667777777765      4433 66666666666666666666653

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.95  E-value=1.4e-27  Score=270.52  Aligned_cols=295  Identities=19%  Similarity=0.157  Sum_probs=219.8

Q ss_pred             CcEEEccCCCCC-cCCccCCCCCCCCEEeCcCCC-CCC--CChhhhc------cCcCchhhh--hhccchh---------
Q psy12423          1 LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNR-ISH--LPVFLRH------PMSPLNNVI--EHGIAEE---------   59 (567)
Q Consensus         1 L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~Ls~n~-i~~--lp~~~~~------~L~~L~~l~--~~~~~~~---------   59 (567)
                      |++|+|++|.+. .+|..|.++++|++|+|++|+ ++.  +|..+..      .++.|+.+.  .+.+...         
T Consensus       493 L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L  572 (876)
T 4ecn_A          493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM  572 (876)
T ss_dssp             CCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTC
T ss_pred             CCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcC
Confidence            577888887755 667777778888888888776 664  6654432      111333221  1111100         


Q ss_pred             -hccccccccCCcccccCCCCCCCCccEEEecCCCCCCcc-ccCCCCC-ccEEEccCCCCCCCC--Cccc--ccCcEEEc
Q psy12423         60 -REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI-ILGNYGN-LTTLDVSENSIESLD--LGAL--NRLESIKC  132 (567)
Q Consensus        60 -~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l~~l~~-L~~L~L~~n~l~~~~--~~~l--~~L~~L~l  132 (567)
                       .+...+...+.+...+ .+..+++|+.|+|++|++...+ .+..+++ |+.|++++|.++.++  +..+  ++|+.|++
T Consensus       573 ~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~L  651 (876)
T 4ecn_A          573 VKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF  651 (876)
T ss_dssp             TTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEEC
T ss_pred             CCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEEC
Confidence             0111122333333334 6788899999999999999655 6888888 999999999999775  3333  34999999


Q ss_pred             ccCcccceec---------CCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcccccCC--------CcCCc
Q psy12423        133 SRNQLKTLVL---------NGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDT--------CPELE  193 (567)
Q Consensus       133 s~n~l~~l~~---------~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~--------l~~L~  193 (567)
                      ++|.+.+.++         ..++|+.|++++|.++.++...+  +++|+.|+|++|.++.+|..+..        +++|+
T Consensus       652 s~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~  731 (876)
T 4ecn_A          652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLT  731 (876)
T ss_dssp             CSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCC
T ss_pred             cCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCcc
Confidence            9999976543         23489999999999997766544  78999999999999999875443        23999


Q ss_pred             EEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccC------CCCCCCchhhhcCCCCCcEE
Q psy12423        194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS------NSINILPQLFLQNSSKLKVL  267 (567)
Q Consensus       194 ~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~------N~l~~l~~~~l~~l~~L~~L  267 (567)
                      .|+|++|+|+.+|..++...+++|+.|+|++|.|+++|..+..+++|+.|+|++      |.+....+..+.++++|+.|
T Consensus       732 ~L~Ls~N~L~~lp~~l~~~~l~~L~~L~Ls~N~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L  811 (876)
T 4ecn_A          732 TIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQL  811 (876)
T ss_dssp             EEECCSSCCCCCCGGGSTTTCTTCCEEECCSSCCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred             EEECCCCCCccchHHhhhccCCCcCEEEeCCCCCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEE
Confidence            999999999999988861128999999999999999999999999999999977      66665545556899999999


Q ss_pred             EccCCcCCCCCCCCcCCccceeecccCCccc
Q psy12423        268 NISKNCLKMLPSLQKGFYLLNISQLRLPGFC  298 (567)
Q Consensus       268 ~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~  298 (567)
                      +|++|+|..||..+.  +.|..+++..|.+.
T Consensus       812 ~Ls~N~L~~Ip~~l~--~~L~~LdLs~N~l~  840 (876)
T 4ecn_A          812 QIGSNDIRKVDEKLT--PQLYILDIADNPNI  840 (876)
T ss_dssp             ECCSSCCCBCCSCCC--SSSCEEECCSCTTC
T ss_pred             ECCCCCCCccCHhhc--CCCCEEECCCCCCC
Confidence            999999999998755  46777777666553

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.95  E-value=1.2e-26  Score=237.87  Aligned_cols=257  Identities=20%  Similarity=0.292  Sum_probs=189.2

Q ss_pred             CCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCc
Q psy12423         18 QDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGT   97 (567)
Q Consensus        18 ~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~   97 (567)
                      +..+++|++|++++|.+..+|.  +..++.|+.+          ++..+....++   . +..+++|++|++++|.++..
T Consensus        40 ~~~l~~L~~L~l~~~~i~~~~~--~~~~~~L~~L----------~l~~n~i~~~~---~-~~~l~~L~~L~L~~n~i~~~  103 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVASIQG--IEYLTNLEYL----------NLNGNQITDIS---P-LSNLVKLTNLYIGTNKITDI  103 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCCCTT--GGGCTTCCEE----------ECCSSCCCCCG---G-GTTCTTCCEEECCSSCCCCC
T ss_pred             chhcccccEEEEeCCccccchh--hhhcCCccEE----------EccCCccccch---h-hhcCCcCCEEEccCCcccCc
Confidence            4578899999999999999875  3456666655          22222233322   2 67889999999999999988


Q ss_pred             cccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccc-ee--cCCCCCcEEEcCCCccccccCCCCCCcccEEe
Q psy12423         98 IILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKT-LV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHLD  173 (567)
Q Consensus        98 ~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~-l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~  173 (567)
                      ..+..+++|++|++++|.+..++ +..+++|++|++++|.... +.  ..+++|+.|++++|.+........+++|++|+
T Consensus       104 ~~~~~l~~L~~L~l~~n~i~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~  183 (347)
T 4fmz_A          104 SALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLS  183 (347)
T ss_dssp             GGGTTCTTCSEEECTTSCCCCCGGGTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEE
T ss_pred             hHHcCCCcCCEEECcCCcccCchhhccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEE
Confidence            78999999999999999999874 7788999999999984333 22  45678888888888887776644477888888


Q ss_pred             cccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCC
Q psy12423        174 ISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINIL  253 (567)
Q Consensus       174 Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l  253 (567)
                      +++|.+..++. +..+++|+.|++++|.+..++.  +.. +++|++|++++|.++.++. +..+++|++|++++|.++.+
T Consensus       184 l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~--~~~-~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~  258 (347)
T 4fmz_A          184 LNYNQIEDISP-LASLTSLHYFTAYVNQITDITP--VAN-MTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQISDI  258 (347)
T ss_dssp             CTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCC
T ss_pred             ccCCccccccc-ccCCCccceeecccCCCCCCch--hhc-CCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCccCCC
Confidence            88888887765 6677777777777777776655  222 6777777777777777766 66777777777777777776


Q ss_pred             chhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccc
Q psy12423        254 PQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFC  298 (567)
Q Consensus       254 ~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~  298 (567)
                      +.  +..+++|+.|++++|+++.+| .+..+++|..+++..+.+.
T Consensus       259 ~~--~~~l~~L~~L~l~~n~l~~~~-~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          259 NA--VKDLTKLKMLNVGSNQISDIS-VLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             GG--GTTCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCC
T ss_pred             hh--HhcCCCcCEEEccCCccCCCh-hhcCCCCCCEEECcCCcCC
Confidence            43  467777777777777777764 3445556666666655543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.95  E-value=1e-26  Score=248.50  Aligned_cols=271  Identities=20%  Similarity=0.280  Sum_probs=130.1

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |+.|+++++.++.+|. +..+++|++|+|++|.++.+|+  +..++.|+.+          .+..+...+++   . +..
T Consensus        48 l~~L~l~~~~i~~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L----------~l~~n~l~~~~---~-~~~  110 (466)
T 1o6v_A           48 VTTLQADRLGIKSIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDI----------LMNNNQIADIT---P-LAN  110 (466)
T ss_dssp             CCEEECCSSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE----------ECCSSCCCCCG---G-GTT
T ss_pred             ccEEecCCCCCccCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEE----------ECCCCccccCh---h-hcC
Confidence            3556666666655553 5555666666666666665554  3344444433          11111111111   1 334


Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC----------------------CCcccccCcEEEcccCccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL----------------------DLGALNRLESIKCSRNQLK  138 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~----------------------~~~~l~~L~~L~ls~n~l~  138 (567)
                      +++|++|++++|.+++...+..+++|++|++++|.+..+                      ++..+++|+.|++++|.+.
T Consensus       111 l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  190 (466)
T 1o6v_A          111 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS  190 (466)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCCCCCChHHcCCCCCCEEECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCC
Confidence            444444444444444443444444444444444443332                      2344455555555555555


Q ss_pred             cee--cCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCC
Q psy12423        139 TLV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGK  216 (567)
Q Consensus       139 ~l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~  216 (567)
                      .+.  ..+++|+.|++++|.++...+...+++|+.|++++|.++.++ .+..+++|+.|++++|.++.++.  +.. +++
T Consensus       191 ~~~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~l~~~~~--~~~-l~~  266 (466)
T 1o6v_A          191 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP--LSG-LTK  266 (466)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTT-CTT
T ss_pred             CChhhccCCCCCEEEecCCcccccccccccCCCCEEECCCCCcccch-hhhcCCCCCEEECCCCccccchh--hhc-CCC
Confidence            443  234555555555555555544333555555555555555543 24455555555555555554443  222 455


Q ss_pred             ccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCc
Q psy12423        217 LHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPG  296 (567)
Q Consensus       217 L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~  296 (567)
                      |+.|++++|.++.++. +..+++|+.|++++|.++.+++  +..+++|+.|++++|+++.+++ ...+++|..+++..|.
T Consensus       267 L~~L~l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~l~~n~  342 (466)
T 1o6v_A          267 LTELKLGANQISNISP-LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP-VSSLTKLQRLFFYNNK  342 (466)
T ss_dssp             CSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSC
T ss_pred             CCEEECCCCccCcccc-ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh-hccCccCCEeECCCCc
Confidence            5555555555555444 4445555555555555555444  3445555555555555554443 2333444444444333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.95  E-value=2e-26  Score=252.83  Aligned_cols=257  Identities=30%  Similarity=0.307  Sum_probs=212.2

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      +++|++++|.|+.+|..+.  ++|++|+|++|.|+.+|. .   ++.|+.+          ++..+....++      ..
T Consensus        42 l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~-~---l~~L~~L----------~Ls~N~l~~lp------~~   99 (622)
T 3g06_A           42 NAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA-L---PPELRTL----------EVSGNQLTSLP------VL   99 (622)
T ss_dssp             CCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC-C---CTTCCEE----------EECSCCCSCCC------CC
T ss_pred             CcEEEecCCCcCccChhhC--CCCcEEEecCCCCCCCCC-c---CCCCCEE----------EcCCCcCCcCC------CC
Confidence            5789999999999998776  799999999999999987 2   3444443          11223222222      26


Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL  160 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~  160 (567)
                      +++|++|+|++|.++....  .+++|+.|++++|.++.++. .+++|++|++++|+++.++....+|+.|++++|.++.+
T Consensus       100 l~~L~~L~Ls~N~l~~l~~--~l~~L~~L~L~~N~l~~lp~-~l~~L~~L~Ls~N~l~~l~~~~~~L~~L~L~~N~l~~l  176 (622)
T 3g06_A          100 PPGLLELSIFSNPLTHLPA--LPSGLCKLWIFGNQLTSLPV-LPPGLQELSVSDNQLASLPALPSELCKLWAYNNQLTSL  176 (622)
T ss_dssp             CTTCCEEEECSCCCCCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC
T ss_pred             CCCCCEEECcCCcCCCCCC--CCCCcCEEECCCCCCCcCCC-CCCCCCEEECcCCcCCCcCCccCCCCEEECCCCCCCCC
Confidence            7899999999999988655  67899999999999998764 35899999999999998887788999999999999987


Q ss_pred             cCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC
Q psy12423        161 IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL  240 (567)
Q Consensus       161 ~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  240 (567)
                      +  ..+++|+.|++++|.++.+|..   +++|+.|++++|.++.+|..     +++|+.|+|++|.|+.+|   ..+++|
T Consensus       177 ~--~~~~~L~~L~Ls~N~l~~l~~~---~~~L~~L~L~~N~l~~l~~~-----~~~L~~L~Ls~N~L~~lp---~~l~~L  243 (622)
T 3g06_A          177 P--MLPSGLQELSVSDNQLASLPTL---PSELYKLWAYNNRLTSLPAL-----PSGLKELIVSGNRLTSLP---VLPSEL  243 (622)
T ss_dssp             C--CCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSSCCCC-----CTTCCEEECCSSCCSCCC---CCCTTC
T ss_pred             c--ccCCCCcEEECCCCCCCCCCCc---cchhhEEECcCCcccccCCC-----CCCCCEEEccCCccCcCC---CCCCcC
Confidence            7  4478999999999999988864   47899999999999988852     578999999999999988   456889


Q ss_pred             cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcccc
Q psy12423        241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCN  299 (567)
Q Consensus       241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~  299 (567)
                      +.|+|++|.|+.+|.    .+++|+.|+|++|+|+.||..+.++++|..+++..|.+.+
T Consensus       244 ~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N~L~~lp~~l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          244 KELMVSGNRLTSLPM----LPSGLLSLSVYRNQLTRLPESLIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             CEEECCSSCCSCCCC----CCTTCCEEECCSSCCCSCCGGGGGSCTTCEEECCSCCCCH
T ss_pred             cEEECCCCCCCcCCc----ccccCcEEeCCCCCCCcCCHHHhhccccCEEEecCCCCCC
Confidence            999999999998887    5688999999999999999888888888888888877654

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.4e-26  Score=255.43  Aligned_cols=280  Identities=16%  Similarity=0.170  Sum_probs=174.3

Q ss_pred             CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccc-ccCCC
Q psy12423          1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV-ERREP   78 (567)
Q Consensus         1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~~   78 (567)
                      +++|+|++|.|+.+ |..|.++++|++|+|++|.+..+++..+.+++.|+.+             +...+.+.. .+..+
T Consensus        35 l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L-------------~Ls~n~l~~~~~~~~  101 (606)
T 3t6q_A           35 TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTL-------------VLTANPLIFMAETAL  101 (606)
T ss_dssp             CCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEE-------------ECTTCCCSEECTTTT
T ss_pred             CcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCee-------------eCCCCcccccChhhh
Confidence            57899999999987 5679999999999999999998877777778877765             222222222 23556


Q ss_pred             CCCCCccEEEecCCCCCCc--cccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCc-
Q psy12423         79 EVKGELTSVNLRSNQLKGT--IILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLI-  148 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~-  148 (567)
                      ..+++|++|++++|.+++.  ..+..+++|++|++++|.+..++   +..+++|++|++++|.+..+.    ..+.+|+ 
T Consensus       102 ~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  181 (606)
T 3t6q_A          102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN  181 (606)
T ss_dssp             SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCS
T ss_pred             cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccce
Confidence            7788888888888888875  36778888888888888887752   444778888888888877664    3456666 


Q ss_pred             -EEEcCCCccccccCCCC-CC----------------------------------------------------cccEEec
Q psy12423        149 -SVIAGNNKLQSLIVSPR-PA----------------------------------------------------RLQHLDI  174 (567)
Q Consensus       149 -~L~l~~n~l~~~~~~~~-~~----------------------------------------------------~L~~L~L  174 (567)
                       .|++++|.++...+..+ ..                                                    +|+.|++
T Consensus       182 l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l  261 (606)
T 3t6q_A          182 LSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINL  261 (606)
T ss_dssp             EEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEEC
T ss_pred             eEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEe
Confidence             66777777666554433 11                                                    3445555


Q ss_pred             ccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCC-
Q psy12423        175 SYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSIN-  251 (567)
Q Consensus       175 s~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~-  251 (567)
                      ++|.++.++. .|..+++|++|++++|.++.+|..+..  +++|++|++++|.++.+ |..+..+++|++|++++|.+. 
T Consensus       262 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~--l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~  339 (606)
T 3t6q_A          262 QKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVG--LSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL  339 (606)
T ss_dssp             TTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCS--CTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCC
T ss_pred             ecCccCccCHHHhccccCCCEEeccCCccCCCChhhcc--cccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCccc
Confidence            5555554432 355555555555555555555554332  55555555555555543 234455555555555555544 


Q ss_pred             CCchhhhcCCCCCcEEEccCCcCCCC---CCCCcCCccceeecccCC
Q psy12423        252 ILPQLFLQNSSKLKVLNISKNCLKML---PSLQKGFYLLNISQLRLP  295 (567)
Q Consensus       252 ~l~~~~l~~l~~L~~L~Ls~N~l~~i---p~~~~~~~~L~~~~l~~~  295 (567)
                      .++...+..+++|++|++++|+++.+   |..+.++++|+.+++..+
T Consensus       340 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n  386 (606)
T 3t6q_A          340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN  386 (606)
T ss_dssp             BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred             ccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC
Confidence            44444445555555555555555533   333334444444444433

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.95  E-value=1.1e-26  Score=251.50  Aligned_cols=111  Identities=22%  Similarity=0.160  Sum_probs=75.9

Q ss_pred             CCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC---chhhhCCCCCcEEEccCCCCCC-CchhhhcCCC
Q psy12423        187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL---PSLIRQIASLKYLFLQSNSINI-LPQLFLQNSS  262 (567)
Q Consensus       187 ~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l---p~~~~~l~~L~~L~Ls~N~l~~-l~~~~l~~l~  262 (567)
                      ..+++|++|++++|.++...+..+.. +++|++|+|++|+++++   |..+..+++|++|++++|.++. +|...+..++
T Consensus       321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~  399 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTDTVFENCGH-LTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTK  399 (520)
T ss_dssp             SSCCCCCEEECCSSCCCTTTTTTCCC-CSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCT
T ss_pred             hhCCcccEEEeECCccChhhhhhhcc-CCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCc
Confidence            56677888888888887633333333 77888888888888753   4567778888888888888887 7777677788


Q ss_pred             CCcEEEccCCcCC-CCCCCCcCCccceeecccCCccccC
Q psy12423        263 KLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       263 ~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      +|+.|++++|+++ .+|....  ..|..+++..|.+...
T Consensus       400 ~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~i  436 (520)
T 2z7x_B          400 SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSI  436 (520)
T ss_dssp             TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCC
T ss_pred             cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccccc
Confidence            8888888888885 4443332  3455555555555433

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.95  E-value=3.6e-27  Score=260.15  Aligned_cols=178  Identities=19%  Similarity=0.164  Sum_probs=144.3

Q ss_pred             cccCcEEEcccCccccee---cCCCCCcEEEcCCCccccccC-CCC--CCcccEEecccCCCCC-cccccCCCcCCcEEE
Q psy12423        124 LNRLESIKCSRNQLKTLV---LNGSSLISVIAGNNKLQSLIV-SPR--PARLQHLDISYNELES-LPDWIDTCPELETIF  196 (567)
Q Consensus       124 l~~L~~L~ls~n~l~~l~---~~~~~L~~L~l~~n~l~~~~~-~~~--~~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~  196 (567)
                      +++|++|++++|.+..++   ..+++|+.|++++|.+....+ ..+  +++|++|++++|.+.. +|..+..+++|++|+
T Consensus       375 ~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          375 TNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             CSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEE
T ss_pred             CCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEE
Confidence            344444444444444333   235778888888888888766 333  8899999999999985 577899999999999


Q ss_pred             CcCCCCCC--CChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCc
Q psy12423        197 ASHNRITQ--LPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       197 Ls~N~l~~--l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~  273 (567)
                      +++|.++.  +|..+ .. +++|++|+|++|.++++ |..+..+++|++|+|++|+++.+++..+..+++|+.|+|++|+
T Consensus       455 l~~n~l~~~~~~~~~-~~-l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~  532 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVF-AN-TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR  532 (606)
T ss_dssp             CTTCEEGGGEECSCC-TT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSC
T ss_pred             CCCCcCCCcchHHhh-cc-CCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCc
Confidence            99999986  44444 33 89999999999999985 5678999999999999999999988888999999999999999


Q ss_pred             CCCCCCCCcCCc-cceeecccCCccccCCcc
Q psy12423        274 LKMLPSLQKGFY-LLNISQLRLPGFCNSDAL  303 (567)
Q Consensus       274 l~~ip~~~~~~~-~L~~~~l~~~~~~~~~~~  303 (567)
                      |+.+|..+..+. .|...++..|++.|.+.+
T Consensus       533 l~~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          533 IETSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CCCEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CcccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            999999877776 588888888888766443

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.95  E-value=7.8e-28  Score=266.78  Aligned_cols=285  Identities=21%  Similarity=0.198  Sum_probs=210.9

Q ss_pred             CcEEEccCCCCC-cCCccCCCCCCCCEEeCcCCC-CCC--CChhhhc-----cCcCchhhhhhccchhhccccccccCCc
Q psy12423          1 LQEFRVDRNDLT-EFPGNQDSFPRLKFLSAAQNR-ISH--LPVFLRH-----PMSPLNNVIEHGIAEEREEDFEQDEDGI   71 (567)
Q Consensus         1 L~~L~Ls~n~l~-~lp~~~~~l~~L~~L~Ls~n~-i~~--lp~~~~~-----~L~~L~~l~~~~~~~~~~~~~~~~~~~l   71 (567)
                      |++|+|++|.+. .+|+.|+++++|++|+|++|+ ++.  +|..++.     .++.|+.+             ....+.+
T Consensus       251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L-------------~L~~n~l  317 (636)
T 4eco_A          251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQII-------------YIGYNNL  317 (636)
T ss_dssp             CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEE-------------ECCSSCC
T ss_pred             CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEE-------------ECCCCcC
Confidence            789999999877 789999999999999999998 885  8877653     12444443             2233333


Q ss_pred             ccccC--CCCCCCCccEEEecCCCCCC-ccccCCCCCccEEEccCCCCCCCC--Cccccc-CcEEEcccCcccceecC--
Q psy12423         72 IVERR--EPEVKGELTSVNLRSNQLKG-TIILGNYGNLTTLDVSENSIESLD--LGALNR-LESIKCSRNQLKTLVLN--  143 (567)
Q Consensus        72 ~~~~~--~~~~l~~L~~L~Ls~n~l~~-~~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~-L~~L~ls~n~l~~l~~~--  143 (567)
                      ...+.  .+..+++|++|++++|++++ .+.+..+++|++|++++|.++.++  +..+++ |++|++++|.++.++..  
T Consensus       318 ~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~  397 (636)
T 4eco_A          318 KTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFD  397 (636)
T ss_dssp             SSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCSSCCSCCC
T ss_pred             CccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCcccchhhh
Confidence            33344  56678889999999998884 336777788888888888887664  677777 88888888888866532  


Q ss_pred             ---CCCCcEEEcCCCccccccCCCC---------CCcccEEecccCCCCCcccc-cCCCcCCcEEECcCCCCCCCChhhh
Q psy12423        144 ---GSSLISVIAGNNKLQSLIVSPR---------PARLQHLDISYNELESLPDW-IDTCPELETIFASHNRITQLPSQFF  210 (567)
Q Consensus       144 ---~~~L~~L~l~~n~l~~~~~~~~---------~~~L~~L~Ls~n~l~~lp~~-l~~l~~L~~L~Ls~N~l~~l~~~~~  210 (567)
                         +++|+.|++++|.+++..+..+         +.+|++|+|++|.++.+|.. +..+++|+.|+|++|.++.+|...+
T Consensus       398 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~  477 (636)
T 4eco_A          398 AKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSL  477 (636)
T ss_dssp             TTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSS
T ss_pred             hcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHh
Confidence               2368888888888877554332         35788888888888888764 4557888888888888888887766


Q ss_pred             hccCC-------CccEEECCCCCCCCCchhhh--CCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccC------CcCC
Q psy12423        211 CRELG-------KLHTLQLSFNRLTSLPSLIR--QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK------NCLK  275 (567)
Q Consensus       211 ~~~l~-------~L~~L~Ls~N~l~~lp~~~~--~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~------N~l~  275 (567)
                      .. ..       +|+.|+|++|+++.+|..+.  .+++|+.|+|++|+|+.+|..+ ..+++|+.|+|++      |++.
T Consensus       478 ~~-~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~l~~L~~L~Ls~N~l~~ip~~~-~~l~~L~~L~Ls~N~~ls~N~l~  555 (636)
T 4eco_A          478 KD-ENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSKFPTQP-LNSSTLKGFGIRNQRDAQGNRTL  555 (636)
T ss_dssp             EE-TTEECTTGGGCCEEECCSSCCCBCCGGGSTTTCTTCCEEECCSSCCSSCCCGG-GGCSSCCEEECCSCBCTTCCBCC
T ss_pred             cc-ccccccccCCccEEECcCCcCCccChhhhhccCCCcCEEECCCCCCCCcChhh-hcCCCCCEEECCCCcccccCccc
Confidence            53 32       78888888888888887775  7888888888888888877665 4678888888844      4443


Q ss_pred             -CCCCCCcCCccceeecccCCccccC
Q psy12423        276 -MLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       276 -~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                       .+|..+..+++|+.+++..|.+...
T Consensus       556 ~~~p~~l~~l~~L~~L~Ls~N~l~~i  581 (636)
T 4eco_A          556 REWPEGITLCPSLTQLQIGSNDIRKV  581 (636)
T ss_dssp             CCCCTTGGGCSSCCEEECCSSCCCBC
T ss_pred             ccChHHHhcCCCCCEEECCCCcCCcc
Confidence             7777777777777777777776443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.95  E-value=1.3e-26  Score=255.84  Aligned_cols=286  Identities=20%  Similarity=0.159  Sum_probs=225.0

Q ss_pred             CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|.++.+ |..|.++++|++|+|++|.++.+++..+.+++.|+.+          ++..+....+.  +..+.
T Consensus        59 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L----------~L~~n~i~~l~--~~~~~  126 (606)
T 3t6q_A           59 LTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHL----------FFIQTGISSID--FIPLH  126 (606)
T ss_dssp             CSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEE----------ECTTSCCSCGG--GSCCT
T ss_pred             ceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEe----------eccccCcccCC--cchhc
Confidence            78999999999977 6789999999999999999998877777778888766          22222222221  35567


Q ss_pred             CCCCccEEEecCCCCCCc--cccCCCCCccEEEccCCCCCCCC---CcccccCc--EEEcccCcccceecCC--------
Q psy12423         80 VKGELTSVNLRSNQLKGT--IILGNYGNLTTLDVSENSIESLD---LGALNRLE--SIKCSRNQLKTLVLNG--------  144 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~--~L~ls~n~l~~l~~~~--------  144 (567)
                      .+++|++|++++|.+.+.  ..+..+++|++|++++|.++.+.   +..+++|+  .|++++|.+..++...        
T Consensus       127 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~  206 (606)
T 3t6q_A          127 NQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS  206 (606)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEE
T ss_pred             cCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccChhHhhhccccc
Confidence            889999999999999875  35556899999999999998864   56778888  8889998887654211        


Q ss_pred             -----------------------------------------------CCCcEEEcCCCccccccCCCC--CCcccEEecc
Q psy12423        145 -----------------------------------------------SSLISVIAGNNKLQSLIVSPR--PARLQHLDIS  175 (567)
Q Consensus       145 -----------------------------------------------~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls  175 (567)
                                                                     .+|+.|++++|.++.+++..+  +++|++|+++
T Consensus       207 L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  286 (606)
T 3t6q_A          207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLT  286 (606)
T ss_dssp             EECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECT
T ss_pred             cccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCHHHhccccCCCEEecc
Confidence                                                           167788888888888887766  7899999999


Q ss_pred             cCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC-CCch-hhhCCCCCcEEEccCCCCCCC
Q psy12423        176 YNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT-SLPS-LIRQIASLKYLFLQSNSINIL  253 (567)
Q Consensus       176 ~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~-~lp~-~~~~l~~L~~L~Ls~N~l~~l  253 (567)
                      +|.++.+|..+..+++|++|++++|.++.+++..+.. +++|++|++++|.+. .+|. .+..+++|++|++++|.++.+
T Consensus       287 ~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~  365 (606)
T 3t6q_A          287 ATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETS  365 (606)
T ss_dssp             TSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEE
T ss_pred             CCccCCCChhhcccccCCEEECccCCcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccc
Confidence            9999999988999999999999999999876655554 888999999998877 4554 477888888888888888876


Q ss_pred             c--hhhhcCCCCCcEEEccCCcCCCCC-CCCcCCccceeecccCCcccc
Q psy12423        254 P--QLFLQNSSKLKVLNISKNCLKMLP-SLQKGFYLLNISQLRLPGFCN  299 (567)
Q Consensus       254 ~--~~~l~~l~~L~~L~Ls~N~l~~ip-~~~~~~~~L~~~~l~~~~~~~  299 (567)
                      +  +..+..+++|+.|++++|+++.++ ..+..+++|..+++..+.+..
T Consensus       366 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          366 DCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             EESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             cCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            5  455678888888888888887554 445566777777776665543

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=5.4e-27  Score=262.35  Aligned_cols=291  Identities=20%  Similarity=0.234  Sum_probs=154.7

Q ss_pred             CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhh-ccchhhccccccccCCcccc-cCC
Q psy12423          1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEH-GIAEEREEDFEQDEDGIIVE-RRE   77 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~-~~~~~~~~~~~~~~~~l~~~-~~~   77 (567)
                      |++|+|++|.++.++ ..|..+++|++|+|++|.+.++++..+.+++.|+.+.-. +....     ......++.. ...
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~-----~~~~~~lp~i~~~~  324 (680)
T 1ziw_A          250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQ-----SISLASLPKIDDFS  324 (680)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-----------CCEECTTT
T ss_pred             CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhc-----ccccccccccChhh
Confidence            567888888887654 567888888888888888877666555566665554100 00000     0000011110 113


Q ss_pred             CCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccC----------------------------CCCCCC---CCccc
Q psy12423         78 PEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSE----------------------------NSIESL---DLGAL  124 (567)
Q Consensus        78 ~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~----------------------------n~l~~~---~~~~l  124 (567)
                      +..+++|++|++++|.+.+..  .+..+++|++|++++                            |+++.+   .+..+
T Consensus       325 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l  404 (680)
T 1ziw_A          325 FQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL  404 (680)
T ss_dssp             TTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTC
T ss_pred             cccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCC
Confidence            344555555555555555433  244444444444444                            444433   24455


Q ss_pred             ccCcEEEcccCccccee-----cCCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCC---CcccccCCCcCCcE
Q psy12423        125 NRLESIKCSRNQLKTLV-----LNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELE---SLPDWIDTCPELET  194 (567)
Q Consensus       125 ~~L~~L~ls~n~l~~l~-----~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~---~lp~~l~~l~~L~~  194 (567)
                      ++|+.|++++|.+....     ..+++|+.|++++|.+..+.+..+  +++|+.|++++|.+.   .+|..+..+++|+.
T Consensus       405 ~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~  484 (680)
T 1ziw_A          405 GHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTI  484 (680)
T ss_dssp             TTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCE
T ss_pred             CCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCE
Confidence            66677777777665321     245566666666666655544444  455555555555543   33555556666666


Q ss_pred             EECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch---------hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCc
Q psy12423        195 IFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS---------LIRQIASLKYLFLQSNSINILPQLFLQNSSKLK  265 (567)
Q Consensus       195 L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~---------~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~  265 (567)
                      |++++|+++.++...+.. +++|++|+|++|.++.++.         .+..+++|++|+|++|.|+.+|...|.++++|+
T Consensus       485 L~Ls~N~l~~i~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~  563 (680)
T 1ziw_A          485 LDLSNNNIANINDDMLEG-LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELK  563 (680)
T ss_dssp             EECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             EECCCCCCCcCChhhhcc-ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcc
Confidence            666666666655554443 5556666666655554321         144555555555555555555555555555555


Q ss_pred             EEEccCCcCCCCCCCCc-CCccceeecccCCcc
Q psy12423        266 VLNISKNCLKMLPSLQK-GFYLLNISQLRLPGF  297 (567)
Q Consensus       266 ~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~~  297 (567)
                      .|+|++|+|+.+|+..+ ++.+|..+++..|.+
T Consensus       564 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l  596 (680)
T 1ziw_A          564 IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLI  596 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECTTSCC
T ss_pred             eeECCCCCCCcCCHhHhCCCCCCCEEECCCCcC
Confidence            55555555555555432 344444444444433

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.95  E-value=1.1e-26  Score=259.89  Aligned_cols=220  Identities=26%  Similarity=0.339  Sum_probs=187.6

Q ss_pred             CCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC-C---CCcccccCcEEEcccCccccee----cCCCCCcEEE
Q psy12423         82 GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES-L---DLGALNRLESIKCSRNQLKTLV----LNGSSLISVI  151 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~---~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~  151 (567)
                      ++|+.|++++|++++..  .+..+++|+.|++++|.+.. +   .+..+++|++|++++|++..+.    ..+++|+.|+
T Consensus       381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~  460 (680)
T 1ziw_A          381 SPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLM  460 (680)
T ss_dssp             SCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEE
T ss_pred             CcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccch
Confidence            57889999999988764  68889999999999999874 3   3778899999999999988765    3578999999


Q ss_pred             cCCCccccc--cCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChh--------hhhccCCCcc
Q psy12423        152 AGNNKLQSL--IVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQ--------FFCRELGKLH  218 (567)
Q Consensus       152 l~~n~l~~~--~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~--------~~~~~l~~L~  218 (567)
                      +++|.++..  .+..+  +++|+.|++++|.++.+|. .+..+++|+.|++++|.++.++..        .+.. +++|+
T Consensus       461 l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~-l~~L~  539 (680)
T 1ziw_A          461 LRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKG-LSHLH  539 (680)
T ss_dssp             CTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTT-CTTCC
T ss_pred             hccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcC-CCCCC
Confidence            999998743  33333  8899999999999998864 689999999999999999876332        2444 89999


Q ss_pred             EEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc--CCccceeecccCC
Q psy12423        219 TLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK--GFYLLNISQLRLP  295 (567)
Q Consensus       219 ~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~--~~~~L~~~~l~~~  295 (567)
                      .|+|++|+++.+|. .+..+++|+.|+|++|+|+.+|+..|..+++|+.|+|++|+|+.+|+..+  .+.+|...++..|
T Consensus       540 ~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N  619 (680)
T 1ziw_A          540 ILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFN  619 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTC
T ss_pred             EEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCC
Confidence            99999999999987 58999999999999999999999999999999999999999999987654  4677888888888


Q ss_pred             ccccCCc
Q psy12423        296 GFCNSDA  302 (567)
Q Consensus       296 ~~~~~~~  302 (567)
                      +|.|.|.
T Consensus       620 ~~~c~c~  626 (680)
T 1ziw_A          620 PFDCTCE  626 (680)
T ss_dssp             CCCBCCC
T ss_pred             CcccCCc
Confidence            8876654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.95  E-value=8.7e-27  Score=257.81  Aligned_cols=334  Identities=19%  Similarity=0.206  Sum_probs=210.8

Q ss_pred             CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      +++|||++|.|+.+|+ +|.++++|++|+|++|+|+.+|+..|.+++.|+.+          ++..+....++  ...+.
T Consensus        54 ~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L----------~Ls~N~l~~l~--~~~f~  121 (635)
T 4g8a_A           54 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL----------ILTGNPIQSLA--LGAFS  121 (635)
T ss_dssp             CCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE----------ECTTCCCCEEC--GGGGT
T ss_pred             CCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEE----------EccCCcCCCCC--HHHhc
Confidence            5789999999999874 79999999999999999999998888888888776          12222222222  13456


Q ss_pred             CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccceecC----------
Q psy12423         80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLVLN----------  143 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~~~----------  143 (567)
                      .+++|++|+|++|++++..  .|+++++|++|++++|.++.+.    +..+++|++|++++|+++.+...          
T Consensus       122 ~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~  201 (635)
T 4g8a_A          122 GLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL  201 (635)
T ss_dssp             TCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTT
T ss_pred             CCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhh
Confidence            7778888888888877665  4777788888888888776542    45567777777777765432100          


Q ss_pred             --------------------------------------------------------------------------------
Q psy12423        144 --------------------------------------------------------------------------------  143 (567)
Q Consensus       144 --------------------------------------------------------------------------------  143 (567)
                                                                                                      
T Consensus       202 ~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l  281 (635)
T 4g8a_A          202 LNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNL  281 (635)
T ss_dssp             CCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGS
T ss_pred             hhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccch
Confidence                                                                                            


Q ss_pred             ---------------------------------------------CCCCcEEEcCCCccccccCC---------------
Q psy12423        144 ---------------------------------------------GSSLISVIAGNNKLQSLIVS---------------  163 (567)
Q Consensus       144 ---------------------------------------------~~~L~~L~l~~n~l~~~~~~---------------  163 (567)
                                                                   ...++.|++.+|.+..+...               
T Consensus       282 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~  361 (635)
T 4g8a_A          282 TIEEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG  361 (635)
T ss_dssp             EEEEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCS
T ss_pred             hhhhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccC
Confidence                                                         01122222222222211110               


Q ss_pred             ------CCCCcccEEecccCCCC--------------------------Ccc-------------------------ccc
Q psy12423        164 ------PRPARLQHLDISYNELE--------------------------SLP-------------------------DWI  186 (567)
Q Consensus       164 ------~~~~~L~~L~Ls~n~l~--------------------------~lp-------------------------~~l  186 (567)
                            ..+++|+.|++++|.+.                          .++                         ..+
T Consensus       362 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~  441 (635)
T 4g8a_A          362 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF  441 (635)
T ss_dssp             CCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTT
T ss_pred             CCCcccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccc
Confidence                  00345555555555432                          001                         123


Q ss_pred             CCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC--CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCC
Q psy12423        187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS--LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKL  264 (567)
Q Consensus       187 ~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L  264 (567)
                      ..+.+++.++++.|.+..++...+.. ++.|+.|+|++|.+..  +|..+..+++|++|+|++|+|+++++..|.++++|
T Consensus       442 ~~l~~l~~l~ls~n~l~~~~~~~~~~-~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L  520 (635)
T 4g8a_A          442 LSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL  520 (635)
T ss_dssp             TTCTTCCEEECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             cccccccccccccccccccccccccc-chhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCC
Confidence            44556666666666666555555544 6677777777775432  45566777777777777777777777777777777


Q ss_pred             cEEEccCCcCCCCCCC-CcCCccceeecccCCccccC--Ccc------eeeccCCCCchhhhHHhhhhHHHHHhhhhhhh
Q psy12423        265 KVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNS--DAL------IGIFDSGDNGDIASTLVQSIPRILLEERTVKE  335 (567)
Q Consensus       265 ~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~--~~~------~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~  335 (567)
                      ++|+|++|+|+.+|+. +.++++|+.++++.|.+.+.  ..+      ...++-++++..|+|-..++..|+.+......
T Consensus       521 ~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~~~~wl~~~~~~~~  600 (635)
T 4g8a_A          521 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV  600 (635)
T ss_dssp             CEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGHHHHHHHHHTTTTBS
T ss_pred             CEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcHHHHHHHHhCCCccC
Confidence            7777777777777654 33566777777776666544  111      22344566777777777788888876655444


Q ss_pred             hhhHHHHHHHHH
Q psy12423        336 TASDYMKYTMLT  347 (567)
Q Consensus       336 ~~~~~l~~a~l~  347 (567)
                      ...++.|..+..
T Consensus       601 ~~~~~~C~~P~~  612 (635)
T 4g8a_A          601 EVERMECATPSD  612 (635)
T ss_dssp             CGGGCBBCSSTT
T ss_pred             CCCCceeCCchH
Confidence            445566665543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.95  E-value=1e-26  Score=253.39  Aligned_cols=133  Identities=23%  Similarity=0.319  Sum_probs=82.1

Q ss_pred             CCcccEEecccCCCCC-cc---cccCCCcCCcEEECcCCCCCCCCh--hhhhccCCCccEEECCCCCCCCCchhhhCCCC
Q psy12423        166 PARLQHLDISYNELES-LP---DWIDTCPELETIFASHNRITQLPS--QFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS  239 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~-lp---~~l~~l~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  239 (567)
                      +++|++|++++|.++. +|   ..+..+++|++|++++|.++.++.  ..+.. +++|++|+|++|+++.+|..+..+++
T Consensus       333 l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~lp~~~~~~~~  411 (549)
T 2z81_A          333 LKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT-LKNLTSLDISRNTFHPMPDSCQWPEK  411 (549)
T ss_dssp             CTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGG-CTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred             CccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhc-CCCCCEEECCCCCCccCChhhccccc
Confidence            4556666666666553 22   234556666666666666665543  22333 66777777777777766666666666


Q ss_pred             CcEEEccCCCCCCCchhhh-----------------cCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        240 LKYLFLQSNSINILPQLFL-----------------QNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       240 L~~L~Ls~N~l~~l~~~~l-----------------~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      |++|++++|.|+.+|..+.                 ..+++|++|+|++|+|+.||.. ..++.|..+++..|.+.+.
T Consensus       412 L~~L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls~N~l~~ip~~-~~l~~L~~L~Ls~N~l~~~  488 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYISRNKLKTLPDA-SLFPVLLVMKISRNQLKSV  488 (549)
T ss_dssp             CCEEECTTSCCSCCCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCG-GGCTTCCEEECCSSCCCCC
T ss_pred             ccEEECCCCCcccccchhcCCceEEECCCCChhhhcccCChhcEEECCCCccCcCCCc-ccCccCCEEecCCCccCCc
Confidence            6666666666665554321                 2567778888888888877763 4566677777766666544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.95  E-value=5.5e-26  Score=248.56  Aligned_cols=280  Identities=21%  Similarity=0.172  Sum_probs=209.4

Q ss_pred             cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccc-cCCCCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVE-RREPEV   80 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~   80 (567)
                      +++++++|+++.+|..+.  ++|++|+|++|.|+.+++..+..++.|+.+             +...+.+... +..+..
T Consensus        34 ~~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L-------------~Ls~N~l~~~~~~~~~~   98 (562)
T 3a79_B           34 SMVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVL-------------RLSHNRIRSLDFHVFLF   98 (562)
T ss_dssp             CEEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEE-------------ECCSCCCCEECTTTTTT
T ss_pred             cEEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEE-------------ECCCCCCCcCCHHHhCC
Confidence            579999999999998665  899999999999999998888888888776             3333333332 456788


Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCccccee-cCCCCC--cEEEcC
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLV-LNGSSL--ISVIAG  153 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~-~~~~~L--~~L~l~  153 (567)
                      +++|++|+|++|+++..... .+++|++|++++|.++.++    ++.+++|++|++++|.+.... ..+++|  +.|+++
T Consensus        99 l~~L~~L~Ls~N~l~~lp~~-~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~  177 (562)
T 3a79_B           99 NQDLEYLDVSHNRLQNISCC-PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLD  177 (562)
T ss_dssp             CTTCCEEECTTSCCCEECSC-CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEE
T ss_pred             CCCCCEEECCCCcCCccCcc-ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEee
Confidence            99999999999999965544 8999999999999998854    678899999999999988643 334555  999999


Q ss_pred             CCcc--ccccCCCC--C---------------------------------------------------------------
Q psy12423        154 NNKL--QSLIVSPR--P---------------------------------------------------------------  166 (567)
Q Consensus       154 ~n~l--~~~~~~~~--~---------------------------------------------------------------  166 (567)
                      +|.+  +...+..+  +                                                               
T Consensus       178 ~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~  257 (562)
T 3a79_B          178 LVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQ  257 (562)
T ss_dssp             ESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEE
T ss_pred             cccccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEec
Confidence            9887  33322211  1                                                               


Q ss_pred             ------------------CcccEEecccCCCC-Cccccc-----------------------------------------
Q psy12423        167 ------------------ARLQHLDISYNELE-SLPDWI-----------------------------------------  186 (567)
Q Consensus       167 ------------------~~L~~L~Ls~n~l~-~lp~~l-----------------------------------------  186 (567)
                                        .+|++|++++|.++ .+|..+                                         
T Consensus       258 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~  337 (562)
T 3a79_B          258 HIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLS  337 (562)
T ss_dssp             EEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEE
T ss_pred             CCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEE
Confidence                              26777888888776 666544                                         


Q ss_pred             ------------CCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCc---hhhhCCCCCcEEEccCCCCC
Q psy12423        187 ------------DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP---SLIRQIASLKYLFLQSNSIN  251 (567)
Q Consensus       187 ------------~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~Ls~N~l~  251 (567)
                                  ..+++|++|++++|.++...+..+.. +++|++|+|++|+++.++   ..+..+++|++|++++|.++
T Consensus       338 l~~n~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~  416 (562)
T 3a79_B          338 ISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCST-LKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN  416 (562)
T ss_dssp             EESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCS-CSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred             ccCCCcccccCccCCCCceEEECCCCccccchhhhhcc-cCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence                        56678888888888888643333333 788888888888888765   35678888888888888888


Q ss_pred             C-CchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCccccC
Q psy12423        252 I-LPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       252 ~-l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      . +|...+..+++|+.|++++|+++ .+|....  .+|..+++..|.+...
T Consensus       417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i  465 (562)
T 3a79_B          417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI  465 (562)
T ss_dssp             SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC
T ss_pred             CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc
Confidence            7 88777778888888888888886 4444332  3455555555554433

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.95  E-value=3.1e-27  Score=267.77  Aligned_cols=299  Identities=23%  Similarity=0.291  Sum_probs=223.6

Q ss_pred             CcEEEccCCCCC-cCCcc-CCCCCCCCEEeCcCCCCC-CCChhhhc---cCcCchhhhhhccchh-----------hccc
Q psy12423          1 LQEFRVDRNDLT-EFPGN-QDSFPRLKFLSAAQNRIS-HLPVFLRH---PMSPLNNVIEHGIAEE-----------REED   63 (567)
Q Consensus         1 L~~L~Ls~n~l~-~lp~~-~~~l~~L~~L~Ls~n~i~-~lp~~~~~---~L~~L~~l~~~~~~~~-----------~~~~   63 (567)
                      |++|+|++|.++ .+|.. |.++++|++|+|++|.++ .+|..+..   .|+.|... .+.+...           .+..
T Consensus       320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls-~N~l~~~~~~~~~~~~~~~L~~  398 (768)
T 3rgz_A          320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS-SNNFSGPILPNLCQNPKNTLQE  398 (768)
T ss_dssp             CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECC-SSEEEEECCTTTTCSTTCCCCE
T ss_pred             ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEcc-CCCcCCCcChhhhhcccCCccE
Confidence            689999999998 88865 899999999999999998 67776653   23333221 1111100           0111


Q ss_pred             cccccCCcc-cccCCCCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCcc
Q psy12423         64 FEQDEDGII-VERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQL  137 (567)
Q Consensus        64 ~~~~~~~l~-~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l  137 (567)
                      .....+.+. ..+..+..+++|++|+|++|.+++..  .+..+++|+.|++++|.+.+.   .+..+++|++|++++|++
T Consensus       399 L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l  478 (768)
T 3rgz_A          399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDL  478 (768)
T ss_dssp             EECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred             EECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcc
Confidence            111222222 23345567788888888888887644  577888888888888888753   266788889999999888


Q ss_pred             ccee----cCCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCCC-CCChhh
Q psy12423        138 KTLV----LNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRIT-QLPSQF  209 (567)
Q Consensus       138 ~~l~----~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~-~l~~~~  209 (567)
                      .+..    ..+++|+.|++++|.+++..+..+  +++|++|+|++|.+. .+|..+..+++|+.|++++|.++ .+|..+
T Consensus       479 ~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~  558 (768)
T 3rgz_A          479 TGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM  558 (768)
T ss_dssp             CSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG
T ss_pred             cCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH
Confidence            7543    356888999999999887766665  788999999999888 67888888999999999999887 666554


Q ss_pred             hhc--------------------------------------------------------------------cCCCccEEE
Q psy12423        210 FCR--------------------------------------------------------------------ELGKLHTLQ  221 (567)
Q Consensus       210 ~~~--------------------------------------------------------------------~l~~L~~L~  221 (567)
                      +..                                                                    .+++|+.|+
T Consensus       559 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~Ld  638 (768)
T 3rgz_A          559 FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD  638 (768)
T ss_dssp             GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEE
T ss_pred             hcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEE
Confidence            320                                                                    135688899


Q ss_pred             CCCCCCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCcccc
Q psy12423        222 LSFNRLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCN  299 (567)
Q Consensus       222 Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~  299 (567)
                      |++|++++ +|..++.++.|+.|+|++|.+++..+..++++++|+.|||++|+++ .+|..+..+..|..+++..|.+.+
T Consensus       639 Ls~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g  718 (768)
T 3rgz_A          639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG  718 (768)
T ss_dssp             CCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE
T ss_pred             CcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc
Confidence            99999885 8888999999999999999998555555688999999999999998 888888888888888888887765


Q ss_pred             C
Q psy12423        300 S  300 (567)
Q Consensus       300 ~  300 (567)
                      .
T Consensus       719 ~  719 (768)
T 3rgz_A          719 P  719 (768)
T ss_dssp             E
T ss_pred             c
Confidence            4

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.95  E-value=9.4e-27  Score=256.38  Aligned_cols=279  Identities=22%  Similarity=0.235  Sum_probs=234.1

Q ss_pred             CcEEEccCCCCCcCCcc-CCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGN-QDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~-~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      ++.|++++|.++.+|.. |..+++|++|+|++|.|+.+++..+..++.|+.+          ++..+...+++  +..+.
T Consensus        53 l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L----------~L~~n~l~~~~--~~~~~  120 (597)
T 3oja_B           53 QKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKL----------YMGFNAIRYLP--PHVFQ  120 (597)
T ss_dssp             CSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEE----------ECCSSCCCCCC--TTTTT
T ss_pred             ceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEE----------ECCCCcCCCCC--HHHHc
Confidence            57899999999999864 7889999999999999999888777778877766          22223333322  24567


Q ss_pred             CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee-cCCCCCcEEEcC
Q psy12423         80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV-LNGSSLISVIAG  153 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~-~~~~~L~~L~l~  153 (567)
                      .+++|++|+|++|.++..+  .+..+++|++|++++|.++.++   +..+++|++|++++|.+..++ ..+++|+.|+++
T Consensus       121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~  200 (597)
T 3oja_B          121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVS  200 (597)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECC
T ss_pred             CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcc
Confidence            8899999999999999876  3789999999999999998874   678899999999999999876 457899999999


Q ss_pred             CCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-ch
Q psy12423        154 NNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PS  232 (567)
Q Consensus       154 ~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~  232 (567)
                      +|.++.+..   +.+|+.|++++|.+..+|..+  .++|+.|+|++|.++..+ .+ .. +++|+.|+|++|.++++ |.
T Consensus       201 ~n~l~~l~~---~~~L~~L~ls~n~l~~~~~~~--~~~L~~L~L~~n~l~~~~-~l-~~-l~~L~~L~Ls~N~l~~~~~~  272 (597)
T 3oja_B          201 YNLLSTLAI---PIAVEELDASHNSINVVRGPV--NVELTILKLQHNNLTDTA-WL-LN-YPGLVEVDLSYNELEKIMYH  272 (597)
T ss_dssp             SSCCSEEEC---CTTCSEEECCSSCCCEEECSC--CSCCCEEECCSSCCCCCG-GG-GG-CTTCSEEECCSSCCCEEESG
T ss_pred             cCccccccC---CchhheeeccCCccccccccc--CCCCCEEECCCCCCCCCh-hh-cc-CCCCCEEECCCCccCCCCHH
Confidence            999887643   468999999999999887644  368999999999999863 33 33 89999999999999985 67


Q ss_pred             hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        233 LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       233 ~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      .+..+++|+.|+|++|.++.+|... ..+++|+.|+|++|+++.+|..+..++.|..+++..|.+...
T Consensus       273 ~~~~l~~L~~L~Ls~N~l~~l~~~~-~~l~~L~~L~Ls~N~l~~i~~~~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          273 PFVKMQRLERLYISNNRLVALNLYG-QPIPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             GGTTCSSCCEEECTTSCCCEEECSS-SCCTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             HhcCccCCCEEECCCCCCCCCCccc-ccCCCCcEEECCCCCCCccCcccccCCCCCEEECCCCCCCCc
Confidence            8999999999999999999988764 679999999999999999998888888888888888877654

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.95  E-value=1.6e-25  Score=238.05  Aligned_cols=270  Identities=19%  Similarity=0.203  Sum_probs=174.7

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |++|++++|.++.+| .|..+++|++|+|++|.|+++|   +..++.|+.+          ++..+...++     .+..
T Consensus        44 L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~~---~~~l~~L~~L----------~Ls~N~l~~~-----~~~~  104 (457)
T 3bz5_A           44 LTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITTLD---LSQNTNLTYL----------ACDSNKLTNL-----DVTP  104 (457)
T ss_dssp             CCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSCCC---CTTCTTCSEE----------ECCSSCCSCC-----CCTT
T ss_pred             CCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCeEc---cccCCCCCEE----------ECcCCCCcee-----ecCC
Confidence            688999999999887 6889999999999999999886   3456666554          2222233332     2567


Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCc-cccee-cCCCCCcEEEcCCCccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQ-LKTLV-LNGSSLISVIAGNNKLQ  158 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~-l~~l~-~~~~~L~~L~l~~n~l~  158 (567)
                      +++|++|++++|++++. +++.+++|++|++++|.++.++++.+++|++|++++|. +..+. ..+++|+.|++++|.++
T Consensus       105 l~~L~~L~L~~N~l~~l-~~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~  183 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKL-DVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKIT  183 (457)
T ss_dssp             CTTCCEEECCSSCCSCC-CCTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCC
T ss_pred             CCcCCEEECCCCcCCee-cCCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccc
Confidence            78888888888888775 47778888888888888888777777788888887773 33332 34567777777777777


Q ss_pred             cccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-----
Q psy12423        159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-----  233 (567)
Q Consensus       159 ~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-----  233 (567)
                      .++ ...+++|+.|++++|.++.++  +..+++|+.|++++|+++.+|  + .. +++|+.|++++|+++++|..     
T Consensus       184 ~l~-l~~l~~L~~L~l~~N~l~~~~--l~~l~~L~~L~Ls~N~l~~ip--~-~~-l~~L~~L~l~~N~l~~~~~~~l~~L  256 (457)
T 3bz5_A          184 ELD-VSQNKLLNRLNCDTNNITKLD--LNQNIQLTFLDCSSNKLTEID--V-TP-LTQLTYFDCSVNPLTELDVSTLSKL  256 (457)
T ss_dssp             CCC-CTTCTTCCEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--C-TT-CTTCSEEECCSSCCSCCCCTTCTTC
T ss_pred             eec-cccCCCCCEEECcCCcCCeec--cccCCCCCEEECcCCcccccC--c-cc-cCCCCEEEeeCCcCCCcCHHHCCCC
Confidence            754 222566777777777776653  566677777777777777665  2 22 66677777777766665420     


Q ss_pred             -------------------------hhCCCCCcEEEccCCCCC-CCchh-------hhcCCCCCcEEEccCCcCCCCCCC
Q psy12423        234 -------------------------IRQIASLKYLFLQSNSIN-ILPQL-------FLQNSSKLKVLNISKNCLKMLPSL  280 (567)
Q Consensus       234 -------------------------~~~l~~L~~L~Ls~N~l~-~l~~~-------~l~~l~~L~~L~Ls~N~l~~ip~~  280 (567)
                                               +..+++|+.|++++|... .+|..       .+..+++|+.|++++|+|+.+|  
T Consensus       257 ~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~--  334 (457)
T 3bz5_A          257 TTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD--  334 (457)
T ss_dssp             CEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC--
T ss_pred             CEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc--
Confidence                                     122344444444444311 11110       1345566666667777666664  


Q ss_pred             CcCCccceeecccCCcccc
Q psy12423        281 QKGFYLLNISQLRLPGFCN  299 (567)
Q Consensus       281 ~~~~~~L~~~~l~~~~~~~  299 (567)
                      +..++.|..+++..|.+.+
T Consensus       335 l~~l~~L~~L~l~~N~l~~  353 (457)
T 3bz5_A          335 VSHNTKLKSLSCVNAHIQD  353 (457)
T ss_dssp             CTTCTTCSEEECCSSCCCB
T ss_pred             cccCCcCcEEECCCCCCCC
Confidence            4555666666666655554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.94  E-value=4.5e-26  Score=232.15  Aligned_cols=256  Identities=14%  Similarity=0.238  Sum_probs=211.6

Q ss_pred             CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|.|+.++. .|.++++|++|+|++|.++.+++..+..++.|+.+             +...+.+...+.  .
T Consensus        54 l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~Ls~n~l~~l~~--~  118 (330)
T 1xku_A           54 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERL-------------YLSKNQLKELPE--K  118 (330)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEE-------------ECCSSCCSBCCS--S
T ss_pred             CeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEE-------------ECCCCcCCccCh--h
Confidence            6789999999999875 79999999999999999999866666777777765             222222222222  2


Q ss_pred             CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC--C---CCcccccCcEEEcccCcccceecC-CCCCcEEE
Q psy12423         80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES--L---DLGALNRLESIKCSRNQLKTLVLN-GSSLISVI  151 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~--~---~~~~l~~L~~L~ls~n~l~~l~~~-~~~L~~L~  151 (567)
                      ..++|++|++++|.++...  .+..+++|++|++++|.+..  .   .+..+++|++|++++|.++.++.. .++|+.|+
T Consensus       119 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~~~~~~L~~L~  198 (330)
T 1xku_A          119 MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELH  198 (330)
T ss_dssp             CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEE
T ss_pred             hcccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCccccccCCEEE
Confidence            2379999999999999876  58899999999999999974  2   367789999999999999988743 47999999


Q ss_pred             cCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC
Q psy12423        152 AGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT  228 (567)
Q Consensus       152 l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  228 (567)
                      +++|.++...+..+  +++|++|++++|.++.++. ++..+++|+.|+|++|.++.+|..+..  +++|++|+|++|.|+
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~--l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLAD--HKYIQVVYLHNNNIS  276 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSSCCTTTTT--CSSCCEEECCSSCCC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCccCChhhcc--CCCcCEEECCCCcCC
Confidence            99999999876665  8899999999999997754 789999999999999999999988754  899999999999999


Q ss_pred             CCchh-hh------CCCCCcEEEccCCCCC--CCchhhhcCCCCCcEEEccCCc
Q psy12423        229 SLPSL-IR------QIASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       229 ~lp~~-~~------~l~~L~~L~Ls~N~l~--~l~~~~l~~l~~L~~L~Ls~N~  273 (567)
                      .++.. +.      ..+.|+.|++++|.+.  .+++..|..+.+|+.++|++|+
T Consensus       277 ~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred             ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence            98753 32      2478999999999997  4777788899999999999985

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.94  E-value=2.3e-26  Score=250.67  Aligned_cols=169  Identities=25%  Similarity=0.241  Sum_probs=120.7

Q ss_pred             ccccCcEEEcccCccccee-------cCCCCCcEEEcCCCccccccC----CCCCCcccEEecccCCCCCcccccCCCcC
Q psy12423        123 ALNRLESIKCSRNQLKTLV-------LNGSSLISVIAGNNKLQSLIV----SPRPARLQHLDISYNELESLPDWIDTCPE  191 (567)
Q Consensus       123 ~l~~L~~L~ls~n~l~~l~-------~~~~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~  191 (567)
                      .+++|++|++++|++.+..       ..+++|+.|++++|.++.++.    ...+++|++|++++|+++.+|..+..+++
T Consensus       332 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~~~~  411 (549)
T 2z81_A          332 HLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPEK  411 (549)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCCCCSCCCCCTT
T ss_pred             cCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCccCChhhccccc
Confidence            3556666666666665421       234566666666666665542    11156677777777777766666666677


Q ss_pred             CcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccC
Q psy12423        192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK  271 (567)
Q Consensus       192 L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~  271 (567)
                      |++|++++|.++.++..+    +++|+.|+|++|++++++   ..+++|++|+|++|+|+.+|..  ..+++|+.|+|++
T Consensus       412 L~~L~Ls~N~l~~l~~~~----~~~L~~L~Ls~N~l~~~~---~~l~~L~~L~Ls~N~l~~ip~~--~~l~~L~~L~Ls~  482 (549)
T 2z81_A          412 MRFLNLSSTGIRVVKTCI----PQTLEVLDVSNNNLDSFS---LFLPRLQELYISRNKLKTLPDA--SLFPVLLVMKISR  482 (549)
T ss_dssp             CCEEECTTSCCSCCCTTS----CTTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSSCCCG--GGCTTCCEEECCS
T ss_pred             ccEEECCCCCcccccchh----cCCceEEECCCCChhhhc---ccCChhcEEECCCCccCcCCCc--ccCccCCEEecCC
Confidence            777777777776666543    346777777777777654   4789999999999999999974  4789999999999


Q ss_pred             CcCCCCCCC-CcCCccceeecccCCccccC
Q psy12423        272 NCLKMLPSL-QKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       272 N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~  300 (567)
                      |+|+.+|+. +..+..|..+++..|.+.|.
T Consensus       483 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  512 (549)
T 2z81_A          483 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  512 (549)
T ss_dssp             SCCCCCCTTGGGGCTTCCEEECCSSCBCCC
T ss_pred             CccCCcCHHHHhcCcccCEEEecCCCccCC
Confidence            999988876 56788898888888887654

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=2.7e-26  Score=251.11  Aligned_cols=154  Identities=22%  Similarity=0.238  Sum_probs=77.8

Q ss_pred             CCCcEEEcCCCcccccc--CCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCC-----------------
Q psy12423        145 SSLISVIAGNNKLQSLI--VSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRIT-----------------  203 (567)
Q Consensus       145 ~~L~~L~l~~n~l~~~~--~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~-----------------  203 (567)
                      ++|+.|++++|.++...  +..+  +++|++|++++|.+..+|..+..+++|++|++++|.+.                 
T Consensus       347 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             TTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCCCEEeCcCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            45556666666655442  1111  45566666666655554444445555555555555444                 


Q ss_pred             --------CCChhhhhccCCCccEEECCCCCCC--CCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCc
Q psy12423        204 --------QLPSQFFCRELGKLHTLQLSFNRLT--SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       204 --------~l~~~~~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~  273 (567)
                              .++...+.. +++|++|+|++|.++  .+|..+..+++|++|+|++|.++.+++..+..+++|+.|++++|+
T Consensus       427 ~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  505 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQ  505 (570)
T ss_dssp             ECTTSCCEECCTTTTTT-CTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             eCcCCcccccchhhhhc-CCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCc
Confidence                    333333332 445555555555544  244445555555555555555555544444555555555555555


Q ss_pred             CCCCCCC-CcCCccceeecccCCcccc
Q psy12423        274 LKMLPSL-QKGFYLLNISQLRLPGFCN  299 (567)
Q Consensus       274 l~~ip~~-~~~~~~L~~~~l~~~~~~~  299 (567)
                      ++.+|+. +..+++|...++..|.+.|
T Consensus       506 l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          506 LKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             CSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             CCCCCHHHhhcccCCcEEEecCCcccC
Confidence            5555443 2344555555555554443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.94  E-value=6e-26  Score=231.44  Aligned_cols=255  Identities=15%  Similarity=0.246  Sum_probs=210.9

Q ss_pred             CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|.++.++ ..|.++++|++|+|++|.++.+++..+..++.|+.+             +...+.+...+... 
T Consensus        56 l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L-------------~L~~n~l~~l~~~~-  121 (332)
T 2ft3_A           56 TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKL-------------YISKNHLVEIPPNL-  121 (332)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEE-------------ECCSSCCCSCCSSC-
T ss_pred             CeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEE-------------ECCCCcCCccCccc-
Confidence            689999999999885 579999999999999999999877777778887766             22222222222222 


Q ss_pred             CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC--C---CCcccccCcEEEcccCcccceecC-CCCCcEEE
Q psy12423         80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES--L---DLGALNRLESIKCSRNQLKTLVLN-GSSLISVI  151 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~--~---~~~~l~~L~~L~ls~n~l~~l~~~-~~~L~~L~  151 (567)
                       .++|++|++++|+++...  .+..+++|+.|++++|.++.  .   .+..+ +|++|++++|.++.++.. .++|+.|+
T Consensus       122 -~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~~~~~~L~~L~  199 (332)
T 2ft3_A          122 -PSSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPKDLPETLNELH  199 (332)
T ss_dssp             -CTTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCSSSCSSCSCCB
T ss_pred             -cccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCccccCCCCEEE
Confidence             279999999999999876  48899999999999999964  2   24455 899999999999988744 36899999


Q ss_pred             cCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC
Q psy12423        152 AGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT  228 (567)
Q Consensus       152 l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  228 (567)
                      +++|.++...+..+  +++|++|++++|.++.++. ++..+++|+.|++++|+++.+|..+..  +++|+.|++++|+|+
T Consensus       200 l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~lp~~l~~--l~~L~~L~l~~N~l~  277 (332)
T 2ft3_A          200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD--LKLLQVVYLHTNNIT  277 (332)
T ss_dssp             CCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCBCCTTGGG--CTTCCEEECCSSCCC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCeecChhhhc--CccCCEEECCCCCCC
Confidence            99999999987666  8899999999999998864 789999999999999999999988654  999999999999999


Q ss_pred             CCch-hhhC------CCCCcEEEccCCCCC--CCchhhhcCCCCCcEEEccCCc
Q psy12423        229 SLPS-LIRQ------IASLKYLFLQSNSIN--ILPQLFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       229 ~lp~-~~~~------l~~L~~L~Ls~N~l~--~l~~~~l~~l~~L~~L~Ls~N~  273 (567)
                      .++. .+..      ...|+.|++++|.+.  .+++..|..+++|+.|++++|+
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             BCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             ccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            8765 3322      467999999999998  7888888999999999999985

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.94  E-value=6.2e-26  Score=257.05  Aligned_cols=297  Identities=21%  Similarity=0.227  Sum_probs=171.7

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhh--hhccchh-------hccccccccCCc
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVI--EHGIAEE-------REEDFEQDEDGI   71 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~--~~~~~~~-------~~~~~~~~~~~l   71 (567)
                      |++|+|++|.++..++.++++++|++|+|++|.+++..+..+..++.|+.+.  .+.+...       .+...+...+.+
T Consensus       202 L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l  281 (768)
T 3rgz_A          202 LEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKF  281 (768)
T ss_dssp             CCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEE
T ss_pred             CCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCcc
Confidence            6788888888885443488888888888888888864444445566666541  1111100       000011111111


Q ss_pred             c-cccCCCCC-CCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCC-CCC---CcccccCcEEEcccCcccce-ec
Q psy12423         72 I-VERREPEV-KGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIE-SLD---LGALNRLESIKCSRNQLKTL-VL  142 (567)
Q Consensus        72 ~-~~~~~~~~-l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~-~~~---~~~l~~L~~L~ls~n~l~~l-~~  142 (567)
                      . ..+..+.. +++|++|+|++|.+++..  .++.+++|++|++++|.+. .++   +..+++|++|++++|.+.+. +.
T Consensus       282 ~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~  361 (768)
T 3rgz_A          282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE  361 (768)
T ss_dssp             EESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT
T ss_pred             CCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH
Confidence            1 11222222 366777777777665433  4666677777777777665 333   55666777777777766532 21


Q ss_pred             ---CCC-CCcEEEcCCCccccccCCCC----CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCCCCCChhhhhcc
Q psy12423        143 ---NGS-SLISVIAGNNKLQSLIVSPR----PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRITQLPSQFFCRE  213 (567)
Q Consensus       143 ---~~~-~L~~L~l~~n~l~~~~~~~~----~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~  213 (567)
                         .++ +|+.|++++|.+++..+..+    +++|++|++++|.++ .+|.++..+++|+.|++++|.++...+..+.. 
T Consensus       362 ~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~-  440 (768)
T 3rgz_A          362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS-  440 (768)
T ss_dssp             THHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG-
T ss_pred             HHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc-
Confidence               122 56666666666654433332    345666666666666 45666666666666666666666332222322 


Q ss_pred             CCCccEEECCCCCCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeec
Q psy12423        214 LGKLHTLQLSFNRLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQ  291 (567)
Q Consensus       214 l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~  291 (567)
                      +++|+.|+|++|.+++ +|..+..+++|++|+|++|.+++..+..+.++++|+.|+|++|+++ .+|..+..+++|..++
T Consensus       441 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          441 LSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILK  520 (768)
T ss_dssp             CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEE
T ss_pred             CCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEE
Confidence            6666666666666663 5666666666666666666666444444556666666666666666 5565555666666666


Q ss_pred             ccCCccc
Q psy12423        292 LRLPGFC  298 (567)
Q Consensus       292 l~~~~~~  298 (567)
                      +..|.+.
T Consensus       521 L~~N~l~  527 (768)
T 3rgz_A          521 LSNNSFS  527 (768)
T ss_dssp             CCSSCCE
T ss_pred             CCCCccc
Confidence            6665554

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.94  E-value=9.2e-26  Score=246.83  Aligned_cols=129  Identities=21%  Similarity=0.259  Sum_probs=88.5

Q ss_pred             CCcccEEecccCCCCCc---ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch--hhhCCCCC
Q psy12423        166 PARLQHLDISYNELESL---PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS--LIRQIASL  240 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~l---p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~--~~~~l~~L  240 (567)
                      +++|++|++++|.++.+   |..+..+++|++|++++|.+..++.. +.. +++|++|++++|.+..++.  .+..+++|
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~-l~~L~~L~l~~n~l~~~~~~~~~~~l~~L  423 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG-LEQLEHLDFQHSNLKQMSEFSVFLSLRNL  423 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET-CTTCCEEECTTSEEESCTTSCTTTTCTTC
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc-cCCCCEEEccCCccccccchhhhhcCCCC
Confidence            56788888888888855   56788999999999999999988776 333 7788888888877766432  45666677


Q ss_pred             cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC--CCCCCCcCCccceeecccCCc
Q psy12423        241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK--MLPSLQKGFYLLNISQLRLPG  296 (567)
Q Consensus       241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~--~ip~~~~~~~~L~~~~l~~~~  296 (567)
                      ++|++++|.+..+++..+..+++|+.|++++|+++  .+|..+..+++|+.+++..|.
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~  481 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQ  481 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCc
Confidence            77777777666655555556666666666666654  355544445544444444443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.8e-25  Score=235.47  Aligned_cols=218  Identities=21%  Similarity=0.284  Sum_probs=159.1

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG  153 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~  153 (567)
                      +++.|+|++|+++...  .|.++++|++|+|++|.++.++   +..+++|++|++++|+++.++.    .+++|+.|+++
T Consensus        65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  144 (440)
T 3zyj_A           65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR  144 (440)
T ss_dssp             TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred             CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence            4556666666665543  4556666666666666665543   4455666666666666665542    34667777777


Q ss_pred             CCccccccCCCC--CCcccEEeccc-CCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423        154 NNKLQSLIVSPR--PARLQHLDISY-NELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS  229 (567)
Q Consensus       154 ~n~l~~~~~~~~--~~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  229 (567)
                      +|.++.++...+  +++|++|+|++ +.+..++. .|..+++|++|+|++|.++.+|. + .. +++|+.|+|++|.|+.
T Consensus       145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~-l~~L~~L~Ls~N~l~~  221 (440)
T 3zyj_A          145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-L-TP-LIKLDELDLSGNHLSA  221 (440)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-C-TT-CSSCCEEECTTSCCCE
T ss_pred             CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCccccc-c-CC-CcccCEEECCCCccCc
Confidence            777776666555  77888888888 45666654 68888899999999999888875 2 22 7889999999998887


Q ss_pred             C-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecccCCccccCCcc
Q psy12423        230 L-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQLRLPGFCNSDAL  303 (567)
Q Consensus       230 l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~~~~~~~~  303 (567)
                      + |..+..+++|+.|+|++|.|+.+++..|.++++|+.|+|++|+|+.+|...+ .+.+|..+++..|+|.|.|.+
T Consensus       222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~l  297 (440)
T 3zyj_A          222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCDI  297 (440)
T ss_dssp             ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSSTT
T ss_pred             cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCCc
Confidence            5 5678888899999999999998888888888999999999999998887654 677888888888887666543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=6.5e-26  Score=228.35  Aligned_cols=238  Identities=25%  Similarity=0.254  Sum_probs=132.4

Q ss_pred             cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK   81 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l   81 (567)
                      +.++++++.++++|..+.  ++|++|+|++|.++.+|..++.                                    .+
T Consensus        10 ~~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~------------------------------------~l   51 (306)
T 2z66_A           10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFD------------------------------------KL   51 (306)
T ss_dssp             TEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTT------------------------------------TC
T ss_pred             CEEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhh------------------------------------cc
Confidence            467788888888887554  5788888888888887765532                                    34


Q ss_pred             CCccEEEecCCCCCCc----cccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423         82 GELTSVNLRSNQLKGT----IILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN  155 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~----~~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n  155 (567)
                      ++|++|+|++|.++..    ..+..+++|++|++++|.+..++  +..+++|++|++++|.+..+.              
T Consensus        52 ~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~--------------  117 (306)
T 2z66_A           52 TQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMS--------------  117 (306)
T ss_dssp             TTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESST--------------
T ss_pred             ccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccc--------------
Confidence            4777788888877643    13445677777777777776553  455666666666666555443              


Q ss_pred             ccccccC-CCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCC--CChhhhhccCCCccEEECCCCCCCC
Q psy12423        156 KLQSLIV-SPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQ--LPSQFFCRELGKLHTLQLSFNRLTS  229 (567)
Q Consensus       156 ~l~~~~~-~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~--l~~~~~~~~l~~L~~L~Ls~N~l~~  229 (567)
                            . ..+  +++|++|++++|.+..+ +..+..+++|++|++++|.++.  +|..+. . +++|++|+|++|.++.
T Consensus       118 ------~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-~-l~~L~~L~Ls~n~l~~  189 (306)
T 2z66_A          118 ------EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFT-E-LRNLTFLDLSQCQLEQ  189 (306)
T ss_dssp             ------TTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCT-T-CTTCCEEECTTSCCCE
T ss_pred             ------cchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHh-h-CcCCCEEECCCCCcCC
Confidence                  2 111  34455555555555422 3344455555555555555543  232222 1 4555555555555554


Q ss_pred             C-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC-CCcCC-ccceeecccCCcccc
Q psy12423        230 L-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS-LQKGF-YLLNISQLRLPGFCN  299 (567)
Q Consensus       230 l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~-~~~~~-~~L~~~~l~~~~~~~  299 (567)
                      + |..+..+++|++|+|++|.++.+++..+..+++|+.|+|++|+++.+++ .+..+ ..|..+++..|.+.+
T Consensus       190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~  262 (306)
T 2z66_A          190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  262 (306)
T ss_dssp             ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred             cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence            3 3344555555555555555555554444555555555555555553322 22333 244444444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.94  E-value=5.7e-26  Score=233.65  Aligned_cols=258  Identities=20%  Similarity=0.188  Sum_probs=200.4

Q ss_pred             EEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423          3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG   82 (567)
Q Consensus         3 ~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~   82 (567)
                      ..+++++.++++|..+.  ++|++|+|++|.|+.+|...+                                    ..++
T Consensus        35 ~c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~------------------------------------~~l~   76 (353)
T 2z80_A           35 ICKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDL------------------------------------QRCV   76 (353)
T ss_dssp             EEECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTT------------------------------------TTCT
T ss_pred             EeeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHh------------------------------------ccCC
Confidence            45778888888887655  478888888888887765443                                    3456


Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec-----CCCCCcEEEc
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL-----NGSSLISVIA  152 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~-----~~~~L~~L~l  152 (567)
                      +|++|++++|++++..  .+..+++|++|++++|.++.++   +..+++|++|++++|+++.++.     .+++|+.|++
T Consensus        77 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l  156 (353)
T 2z80_A           77 NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRV  156 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEE
T ss_pred             CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEEC
Confidence            7888888888888754  4778888888888888888875   5678888888888888877653     4678888888


Q ss_pred             CCC-ccccccCCCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCC
Q psy12423        153 GNN-KLQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT  228 (567)
Q Consensus       153 ~~n-~l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~  228 (567)
                      ++| .++.+.+..+  +++|++|++++|.++.+ |..+..+++|++|++++|.++.++...+.. +++|+.|++++|.++
T Consensus       157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~  235 (353)
T 2z80_A          157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV-TSSVECLELRDTDLD  235 (353)
T ss_dssp             EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHH-TTTEEEEEEESCBCT
T ss_pred             CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhh-cccccEEECCCCccc
Confidence            888 4777766555  78899999999998865 678888899999999999998888777655 889999999999888


Q ss_pred             CCch----hhhCCCCCcEEEccCCCCCC-----CchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccc
Q psy12423        229 SLPS----LIRQIASLKYLFLQSNSINI-----LPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFC  298 (567)
Q Consensus       229 ~lp~----~~~~l~~L~~L~Ls~N~l~~-----l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~  298 (567)
                      .++.    .......++.++++++.++.     +|. .+..+++|+.|++++|+|+.+|... ..+++|..+++..|.+.
T Consensus       236 ~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~-~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~~~  314 (353)
T 2z80_A          236 TFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMK-LLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWD  314 (353)
T ss_dssp             TCCCC------CCCCCCEEEEESCBCCHHHHHHHHH-HHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cccccccccccccchhhccccccccccCcchhhhHH-HHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeCCCcc
Confidence            7542    12346678888888888774     443 3578889999999999999998875 57788888888888776


Q ss_pred             cC
Q psy12423        299 NS  300 (567)
Q Consensus       299 ~~  300 (567)
                      +.
T Consensus       315 ~~  316 (353)
T 2z80_A          315 CS  316 (353)
T ss_dssp             CC
T ss_pred             Cc
Confidence            54

>2p8e_A PPM1B beta isoform variant 6; structural genomics, hydrolase, PSI-2, protein structure initiative; 1.82A {Homo sapiens}

Probab=99.94  E-value=3.8e-26  Score=229.86  Aligned_cols=173  Identities=17%  Similarity=0.261  Sum_probs=142.4

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh-------------hhhhhHHHHHHHHHHHHHHhhhcc----cccCce
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV-------------KETASDYMKYTMLTAHREIKDSLH----RYSLSA  363 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l-------------~~~~~~~l~~a~l~~n~~i~~~~~----~~~~st  363 (567)
                      ..++.++||+++...+.+....++..+.+...+             .....+++..+|..+++.+.....    ...+++
T Consensus        55 ~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~Gt  134 (307)
T 2p8e_A           55 WSFFAVYDGHAGSRVANYCSTHLLEHITTNEDFRAAGKSGSALELSVENVKNGIRTGFLKIDEYMRNFSDLRNGMDRSGS  134 (307)
T ss_dssp             EEEEEEEEEESCSHHHHHHHHHHHHHHHTSTTTC-----------CHHHHHHHHHHHHHHHHHHHHTSTTTC---CCCEE
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHHHHHhhHhhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCC
Confidence            468999999999999999998888877653222             123478899999999998876532    234566


Q ss_pred             eEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCCC
Q psy12423        364 TLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGSC  416 (567)
Q Consensus       364 ~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~~  416 (567)
                      |++.+.+.+.    ++++||+||||+|++|+|+..+||+||+                           ++|++|+..++
T Consensus       135 T~~~~~i~~~----~l~vanvGDSRa~l~r~g~~~~lT~DH~~~~~~E~~rI~~~gg~v~~~rv~g~l~ltRalGd~~~k  210 (307)
T 2p8e_A          135 TAVGVMISPK----HIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVMIQRVNGSLAVSRALGDYDYK  210 (307)
T ss_dssp             CEEEEEECSS----EEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHHHHHHTTCCEETTEETTTBSCSBCEECGGGS
T ss_pred             eEEEEEEECC----cEEEEEccCcEEEEEECCccccCCCCCCCCCHHHHHHHHHcCCEEEeCcccCeEeccccccCHHHh
Confidence            6666666665    8999999999999999999999999997                           46888886543


Q ss_pred             ---------CCccCCCceEEEEecCCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCc
Q psy12423        417 ---------PLSFPDPHVTEVMLHENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNL  467 (567)
Q Consensus       417 ---------~~~~~~p~v~~~~l~~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dni  467 (567)
                               ++++++||+..+++.++|+||||||||||                    +++.+|++|++.|+.+|+.|||
T Consensus       211 ~~~~~~~~~~~v~~~pdv~~~~l~~~d~~llL~SDGl~d~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~g~~DNi  290 (307)
T 2p8e_A          211 CVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKSRLEVSDDLENVCNWVVDTCLHKGSRDNM  290 (307)
T ss_dssp             CCTTCCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCSCE
T ss_pred             cCcccCCCCCeEeccCeEEEEEcCCCCeEEEEECCCcccCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCe
Confidence                     56789999999999999999999999999                    5778999999999999999999


Q ss_pred             EEEEEEeCCC
Q psy12423        468 SVLVLRFQGS  477 (567)
Q Consensus       468 t~~vv~~~~~  477 (567)
                      |||||++..+
T Consensus       291 Tvivv~~~~~  300 (307)
T 2p8e_A          291 SIVLVCFSNE  300 (307)
T ss_dssp             EEEEEEC---
T ss_pred             EEEEEECCCC
Confidence            9999998744

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.94  E-value=5.6e-25  Score=233.76  Aligned_cols=224  Identities=28%  Similarity=0.314  Sum_probs=104.6

Q ss_pred             CCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCccccC
Q psy12423         22 PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILG  101 (567)
Q Consensus        22 ~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~  101 (567)
                      ++|++|++++|.++++|.  +..++.|+.+          ++..+...+++      ...++|++|++++|++++...++
T Consensus       131 ~~L~~L~L~~n~l~~lp~--~~~l~~L~~L----------~l~~N~l~~lp------~~~~~L~~L~L~~n~l~~l~~~~  192 (454)
T 1jl5_A          131 PLLEYLGVSNNQLEKLPE--LQNSSFLKII----------DVDNNSLKKLP------DLPPSLEFIAAGNNQLEELPELQ  192 (454)
T ss_dssp             TTCCEEECCSSCCSSCCC--CTTCTTCCEE----------ECCSSCCSCCC------CCCTTCCEEECCSSCCSSCCCCT
T ss_pred             CCCCEEECcCCCCCCCcc--cCCCCCCCEE----------ECCCCcCcccC------CCcccccEEECcCCcCCcCcccc
Confidence            456666666666666662  3344444443          11111111111      11235555555555555544455


Q ss_pred             CCCCccEEEccCCCCCCCCCcccccCcEEEcccCccccee--cCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCC
Q psy12423        102 NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL  179 (567)
Q Consensus       102 ~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l  179 (567)
                      .+++|++|++++|.++.++- ..++|++|++++|.+..++  ..+++|+.|++++|+++.++.  .+++|++|++++|.+
T Consensus       193 ~l~~L~~L~l~~N~l~~l~~-~~~~L~~L~l~~n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~--~~~~L~~L~l~~N~l  269 (454)
T 1jl5_A          193 NLPFLTAIYADNNSLKKLPD-LPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPD--LPPSLEALNVRDNYL  269 (454)
T ss_dssp             TCTTCCEEECCSSCCSSCCC-CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCS--CCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCcCCcCCC-CcCcccEEECcCCcCCcccccCCCCCCCEEECCCCcCCcccc--cccccCEEECCCCcc
Confidence            55555555555555554321 1234555555555554433  233445555555555544332  134555555555555


Q ss_pred             CCcccccCCCcCCcEEECcCCCCCCCChhh---------------hhccCCCccEEECCCCCCCCCchhhhCCCCCcEEE
Q psy12423        180 ESLPDWIDTCPELETIFASHNRITQLPSQF---------------FCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF  244 (567)
Q Consensus       180 ~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~---------------~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~  244 (567)
                      +.+|..   +++|+.|++++|.++.++...               +...+++|+.|++++|+++++|..   +++|++|+
T Consensus       270 ~~l~~~---~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~  343 (454)
T 1jl5_A          270 TDLPEL---PQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLI  343 (454)
T ss_dssp             SCCCCC---CTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEE
T ss_pred             cccCcc---cCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc---CCcCCEEE
Confidence            544432   244555555555544433210               000023455555555555554442   34555555


Q ss_pred             ccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423        245 LQSNSINILPQLFLQNSSKLKVLNISKNCLKM  276 (567)
Q Consensus       245 Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~  276 (567)
                      +++|.++.+|.    .+++|+.|++++|+++.
T Consensus       344 L~~N~l~~lp~----~l~~L~~L~L~~N~l~~  371 (454)
T 1jl5_A          344 ASFNHLAEVPE----LPQNLKQLHVEYNPLRE  371 (454)
T ss_dssp             CCSSCCSCCCC----CCTTCCEEECCSSCCSS
T ss_pred             CCCCccccccc----hhhhccEEECCCCCCCc
Confidence            55555555554    24455555555555554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.93  E-value=3.9e-25  Score=235.19  Aligned_cols=218  Identities=20%  Similarity=0.254  Sum_probs=161.2

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG  153 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~  153 (567)
                      +|++|+|++|+++...  .|..+++|++|+|++|.++.++   +..+++|++|++++|.++.++.    .+++|+.|+++
T Consensus        76 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  155 (452)
T 3zyi_A           76 NTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLR  155 (452)
T ss_dssp             TCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECC
T ss_pred             CccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECC
Confidence            5666666666666543  4666666666666666666543   4556666667776666665542    35677777777


Q ss_pred             CCccccccCCCC--CCcccEEeccc-CCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423        154 NNKLQSLIVSPR--PARLQHLDISY-NELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS  229 (567)
Q Consensus       154 ~n~l~~~~~~~~--~~~L~~L~Ls~-n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  229 (567)
                      +|.++.++...+  +++|++|++++ |.+..++. .|..+++|+.|+|++|.++.+|. + .. +++|+.|+|++|.|++
T Consensus       156 ~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~-~~-l~~L~~L~Ls~N~l~~  232 (452)
T 3zyi_A          156 NNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-L-TP-LVGLEELEMSGNHFPE  232 (452)
T ss_dssp             SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-C-TT-CTTCCEEECTTSCCSE
T ss_pred             CCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccccc-c-cc-cccccEEECcCCcCcc
Confidence            777777666555  77888888887 45666654 67888889999999998888875 2 22 7888999999998887


Q ss_pred             C-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecccCCccccCCcc
Q psy12423        230 L-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQLRLPGFCNSDAL  303 (567)
Q Consensus       230 l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l~~~~~~~~~~~  303 (567)
                      + |..+..+++|+.|+|++|.|+.+++..|..+++|+.|+|++|+|+.+|...+ .+.+|..+++..|.|.|.|.+
T Consensus       233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~~  308 (452)
T 3zyi_A          233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCDI  308 (452)
T ss_dssp             ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTTT
T ss_pred             cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCCc
Confidence            5 5678888899999999999888888878888899999999999988887644 577788888888887766554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=5e-26  Score=260.43  Aligned_cols=283  Identities=20%  Similarity=0.205  Sum_probs=227.4

Q ss_pred             CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|.+..+ |..|..+++|+.|+|++|.|+.+++..+.+++.|+.+          ++..+....+  .+..+.
T Consensus       268 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L----------~Ls~N~l~~~--~~~~~~  335 (844)
T 3j0a_A          268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVL----------NLSYNLLGEL--YSSNFY  335 (844)
T ss_dssp             CCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEE----------EEESCCCSCC--CSCSCS
T ss_pred             ccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEE----------ECCCCCCCcc--CHHHhc
Confidence            57899999999976 4678999999999999999998877777778877765          2222222222  235667


Q ss_pred             CCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423         80 VKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL  157 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l  157 (567)
                      .+++|++|++++|.+....  .+..+++|++|++++|.++.++.  +++|+.|++++|++..++....+++.|++++|.+
T Consensus       336 ~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~--~~~L~~L~l~~N~l~~l~~~~~~l~~L~ls~N~l  413 (844)
T 3j0a_A          336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF--IPSIPDIFLSGNKLVTLPKINLTANLIHLSENRL  413 (844)
T ss_dssp             SCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS--CCSCSEEEEESCCCCCCCCCCTTCCEEECCSCCC
T ss_pred             CCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC--CCCcchhccCCCCcccccccccccceeecccCcc
Confidence            8899999999999998766  58889999999999999987654  8889999999999998887788999999999999


Q ss_pred             ccccCCCC---CCcccEEecccCCCCCccc--ccCCCcCCcEEECcCCCCCCCC-----hhhhhccCCCccEEECCCCCC
Q psy12423        158 QSLIVSPR---PARLQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLP-----SQFFCRELGKLHTLQLSFNRL  227 (567)
Q Consensus       158 ~~~~~~~~---~~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~N~l~~l~-----~~~~~~~l~~L~~L~Ls~N~l  227 (567)
                      +.+....+   +++|+.|+|++|.++.++.  .+..+++|+.|+|++|.++.++     ...+.. +++|+.|+|++|.|
T Consensus       414 ~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~-l~~L~~L~Ls~N~l  492 (844)
T 3j0a_A          414 ENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEG-LSHLQVLYLNHNYL  492 (844)
T ss_dssp             CSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSC-BCCEECCCCCHHHH
T ss_pred             ccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcC-cccccEEECCCCcc
Confidence            88765432   7899999999999997643  4667899999999999997433     344554 89999999999999


Q ss_pred             CCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccCCc
Q psy12423        228 TSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDA  302 (567)
Q Consensus       228 ~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~  302 (567)
                      +++|. .+..+++|+.|+|++|+|+.+|+..+.  ++|+.|+|++|+|+.+++..+  ..|..+++..|+|.|.|.
T Consensus       493 ~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~--~~L~~l~l~~Np~~C~c~  564 (844)
T 3j0a_A          493 NSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF--VSLSVLDITHNKFICECE  564 (844)
T ss_dssp             TTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC--SSCCEEEEEEECCCCSSS
T ss_pred             cccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh--CCcCEEEecCCCcccccc
Confidence            98765 578999999999999999999987764  899999999999997776543  356666666666655543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.93  E-value=2e-24  Score=229.69  Aligned_cols=251  Identities=22%  Similarity=0.297  Sum_probs=153.6

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |++|+|++|.|+.+|  ++.+++|++|++++|.|+++|   +..++.|+.+          ++..+...++     .+..
T Consensus        66 L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~---~~~l~~L~~L----------~L~~N~l~~l-----~~~~  125 (457)
T 3bz5_A           66 LTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD---VTPLTKLTYL----------NCDTNKLTKL-----DVSQ  125 (457)
T ss_dssp             CSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEE----------ECCSSCCSCC-----CCTT
T ss_pred             CCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee---cCCCCcCCEE----------ECCCCcCCee-----cCCC
Confidence            678888888888886  788888888888888888875   3455555554          1112222221     1455


Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCC-CCCCCCCcccccCcEEEcccCccccee-cCCCCCcEEEcCCCccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSEN-SIESLDLGALNRLESIKCSRNQLKTLV-LNGSSLISVIAGNNKLQ  158 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~L~~L~ls~n~l~~l~-~~~~~L~~L~l~~n~l~  158 (567)
                      +++|++|++++|++++. .++.+++|++|++++| .+..+++..+++|++|++++|+++.++ ..+++|+.|++++|.++
T Consensus       126 l~~L~~L~l~~N~l~~l-~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~l~l~~l~~L~~L~l~~N~l~  204 (457)
T 3bz5_A          126 NPLLTYLNCARNTLTEI-DVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCDTNNIT  204 (457)
T ss_dssp             CTTCCEEECTTSCCSCC-CCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCCCCCTTCTTCCEEECCSSCCS
T ss_pred             CCcCCEEECCCCcccee-ccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccceeccccCCCCCEEECcCCcCC
Confidence            66666666666666653 3555555555555555 344444555555555555555555543 23345555555555555


Q ss_pred             cccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhh---------------------------
Q psy12423        159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFC---------------------------  211 (567)
Q Consensus       159 ~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~---------------------------  211 (567)
                      .+. ...+++|++|++++|+++.+|  +..+++|+.|++++|.++.+|...+.                           
T Consensus       205 ~~~-l~~l~~L~~L~Ls~N~l~~ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~  281 (457)
T 3bz5_A          205 KLD-LNQNIQLTFLDCSSNKLTEID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ  281 (457)
T ss_dssp             CCC-CTTCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE
T ss_pred             eec-cccCCCCCEEECcCCcccccC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCccc
Confidence            442 111445555555555555544  44455555555555555444322111                           


Q ss_pred             -ccCCCccEEECCCCCCCC-Cch--------hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423        212 -RELGKLHTLQLSFNRLTS-LPS--------LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP  278 (567)
Q Consensus       212 -~~l~~L~~L~Ls~N~l~~-lp~--------~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip  278 (567)
                       ..+++|+.|+|++|...+ +|.        .+..+++|++|++++|+|++++   +..+++|+.|++++|+|+.+|
T Consensus       282 ~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l~---l~~l~~L~~L~l~~N~l~~l~  355 (457)
T 3bz5_A          282 AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTELD---VSHNTKLKSLSCVNAHIQDFS  355 (457)
T ss_dssp             CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCCC---CTTCTTCSEEECCSSCCCBCT
T ss_pred             ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcccccc---cccCCcCcEEECCCCCCCCcc
Confidence             114677777777775332 221        2567789999999999999985   578999999999999999876

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.93  E-value=2.8e-25  Score=254.21  Aligned_cols=265  Identities=23%  Similarity=0.252  Sum_probs=182.2

Q ss_pred             CcEEEccCCCCCcC-CccCCCCCCCCEEeCcCCC-CCCCChhhhccCcCchhhhhhccchhhccccccccCCccc-ccCC
Q psy12423          1 LQEFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNR-ISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV-ERRE   77 (567)
Q Consensus         1 L~~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~-i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~-~~~~   77 (567)
                      |++|+|++|.|+.+ |..|.++++|++|+|++|. +..+++..+.+++.|+.+             +...+.+.. .+..
T Consensus        26 l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L-------------~Ls~N~l~~~~p~~   92 (844)
T 3j0a_A           26 TERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL-------------DLGSSKIYFLHPDA   92 (844)
T ss_dssp             CCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE-------------ECTTCCCCEECTTS
T ss_pred             cCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE-------------ECCCCcCcccCHhH
Confidence            57889999988876 5678888888888888884 445766666777777765             222222222 2455


Q ss_pred             CCCCCCccEEEecCCCCCCcc----ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccceecC----C-
Q psy12423         78 PEVKGELTSVNLRSNQLKGTI----ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKTLVLN----G-  144 (567)
Q Consensus        78 ~~~l~~L~~L~Ls~n~l~~~~----~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~l~~~----~-  144 (567)
                      +..+++|++|+|++|.+++..    .+.++++|++|++++|.++.+.    ++.+++|++|++++|.+......    + 
T Consensus        93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~  172 (844)
T 3j0a_A           93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ  172 (844)
T ss_dssp             SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred             ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence            667777777777777777522    2677777777777777776642    56677777777777766543210    0 


Q ss_pred             -CC------------------------------CcEEEcCCCccccccCCC-----------------------------
Q psy12423        145 -SS------------------------------LISVIAGNNKLQSLIVSP-----------------------------  164 (567)
Q Consensus       145 -~~------------------------------L~~L~l~~n~l~~~~~~~-----------------------------  164 (567)
                       ++                              |+.|++++|.++...+..                             
T Consensus       173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l  252 (844)
T 3j0a_A          173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI  252 (844)
T ss_dssp             HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred             CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence             22                              666666666443221110                             


Q ss_pred             -------C----CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-c
Q psy12423        165 -------R----PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-P  231 (567)
Q Consensus       165 -------~----~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p  231 (567)
                             +    +++|+.|++++|.+..+ |..+..+++|+.|+|++|.++.++...|.. +++|++|+|++|.++.+ |
T Consensus       253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~  331 (844)
T 3j0a_A          253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYG-LDNLQVLNLSYNLLGELYS  331 (844)
T ss_dssp             TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTT-CSSCCEEEEESCCCSCCCS
T ss_pred             CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcC-CCCCCEEECCCCCCCccCH
Confidence                   0    24677777777777755 456777788888888888888776666655 77888888888888775 5


Q ss_pred             hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       232 ~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      ..+..+++|++|++++|.|+.+++..|..+++|+.|+|++|.++.+|.
T Consensus       332 ~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~  379 (844)
T 3j0a_A          332 SNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHF  379 (844)
T ss_dssp             CSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSS
T ss_pred             HHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccC
Confidence            567778888888888888888877777778888888888888877664

>3qn1_B Protein phosphatase 2C 16; start domain, BET V domain, PYR/PYL/RCAR, PP2C, abscisic ACI receptor, type 2C protein phosphatase; HET: A8S; 1.80A {Arabidopsis thaliana} PDB: 3zvu_B* 3ujg_B 3nmt_B* 4ds8_B* 3rt0_A 3kb3_B*

Probab=99.93  E-value=7.3e-26  Score=230.48  Aligned_cols=173  Identities=21%  Similarity=0.296  Sum_probs=146.6

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh--------------hhhhhHHHHHHHHHHHHHHhhhc----------
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV--------------KETASDYMKYTMLTAHREIKDSL----------  356 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l--------------~~~~~~~l~~a~l~~n~~i~~~~----------  356 (567)
                      ..+|+++||+++...+.+....++..+.+....              ...+.+++..+|..+++.+....          
T Consensus        62 ~~l~~V~DGhGG~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~d~~l~~~~~~~~~~~~~~  141 (337)
T 3qn1_B           62 GHFFGVYDGHGGHKVADYCRDRLHFALAEEIERIKDELCKRNTGEGRQVQWDKVFTSCFLTVDGEIEGKIGRAVVGSSDK  141 (337)
T ss_dssp             EEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHTC------------CHHHHHHHHHHHHHHHHHHHTSSCBCCTTCSSC
T ss_pred             eEEEEEEeCCCChhHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHhhHHHHhhhhccccccccc
Confidence            568999999999999999888888777664221              23457899999999999887654          


Q ss_pred             -----ccccCceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC--------------------------
Q psy12423        357 -----HRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT--------------------------  405 (567)
Q Consensus       357 -----~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~--------------------------  405 (567)
                           ....+++|++.+.+.+.    ++++||+||||+|++|+|+.++||+||+                          
T Consensus       142 ~~~~~~~~~~GtT~~~~~i~~~----~l~~anvGDSR~~l~r~g~~~~lT~DH~~~~~~e~~ri~~~gg~v~~~~~~r~~  217 (337)
T 3qn1_B          142 VLEAVASETVGSTAVVALVCSS----HIVVSNCGDSRAVLFRGKEAMPLSVDHKPDREDEYARIENAGGKVIQWQGARVF  217 (337)
T ss_dssp             BCCCSSCTTCEECEEEEEECSS----EEEEEEESSCEEEEEETTEEEESCCCCCTTSHHHHHHHHHTTCCEEESSSEEET
T ss_pred             cccccccCCCCceEEEEEEECC----EEEEEeccCcEEEEEeCCEeeeecCCCCCCCHHHHHHHHHcCCeEEecCCceec
Confidence                 12346677776776666    8999999999999999999999999997                          


Q ss_pred             ----CCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC-------------C----------------------
Q psy12423        406 ----LSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS-------------E----------------------  446 (567)
Q Consensus       406 ----~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~-------------~----------------------  446 (567)
                          ++|++|+..++++++++|++..+.+.+.|+||||||||||             .                      
T Consensus       218 g~l~~sRalGd~~~~~~v~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (337)
T 3qn1_B          218 GVLAMSRSIGDRYLKPYVIPEPEVTFMPRSREDECLILASDGLWDVMNNQEVCEIARRRILMWHKKNGAPPLAERGKGID  297 (337)
T ss_dssp             TTBSCSBCEECGGGTTTSBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHHHHHHHHCCC----CCSSCC
T ss_pred             CccccccccccccccCCCCCcceEEEEEeCCCCCEEEEEecCcccCCCHHHHHHHHHHHhhhhccccccccccccccccC
Confidence                5789999888899999999999999888999999999999             1                      


Q ss_pred             --HHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423        447 --PVLAAKRIQDLAQSYGSEDNLSVLVLRFQGS  477 (567)
Q Consensus       447 --~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~  477 (567)
                        ++.+|+.|++.|+.+|+.||||||||++...
T Consensus       298 ~~~~~~a~~Lv~~A~~~g~~DNiTvivv~l~~~  330 (337)
T 3qn1_B          298 PACQAAADYLSMLALQKGSKDNISIIVIDLKAQ  330 (337)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSCEEEEEEECCSC
T ss_pred             hhHHHHHHHHHHHHHHcCCCCCEEEEEEEecCC
Confidence              2468999999999999999999999999843

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.93  E-value=8.8e-25  Score=241.70  Aligned_cols=290  Identities=20%  Similarity=0.179  Sum_probs=209.7

Q ss_pred             CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|.|+.+|+ +|.++++|++|+|++|+|+.+|+..|.+++.|+.+          ++..+...+++  ...+.
T Consensus        78 L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L----------~Ls~N~l~~l~--~~~~~  145 (635)
T 4g8a_A           78 LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL----------VAVETNLASLE--NFPIG  145 (635)
T ss_dssp             CCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEE----------ECTTSCCCCST--TCCCT
T ss_pred             CCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEE----------ECCCCcCCCCC--hhhhh
Confidence            7899999999999965 69999999999999999999999998888888876          22222233322  23466


Q ss_pred             CCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCCCcc---------------------------------
Q psy12423         80 VKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLDLGA---------------------------------  123 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~~~~---------------------------------  123 (567)
                      .+++|++|+|++|.++...   .+..+++|++|++++|+++.+....                                 
T Consensus       146 ~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~  225 (635)
T 4g8a_A          146 HLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR  225 (635)
T ss_dssp             TCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCE
T ss_pred             cCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchh
Confidence            7788888888888876532   4667778888888877654321000                                 


Q ss_pred             --------------------------------------------------------------------------------
Q psy12423        124 --------------------------------------------------------------------------------  123 (567)
Q Consensus       124 --------------------------------------------------------------------------------  123 (567)
                                                                                                      
T Consensus       226 ~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~  305 (635)
T 4g8a_A          226 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL  305 (635)
T ss_dssp             EEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG
T ss_pred             hhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhh
Confidence                                                                                            


Q ss_pred             ---------------------cccCcEEEcccCccccee-----------------------cCCCCCcEEEcCCCcccc
Q psy12423        124 ---------------------LNRLESIKCSRNQLKTLV-----------------------LNGSSLISVIAGNNKLQS  159 (567)
Q Consensus       124 ---------------------l~~L~~L~ls~n~l~~l~-----------------------~~~~~L~~L~l~~n~l~~  159 (567)
                                           ...|+.|++.+|.+..+.                       ..+++|+.|+++.|.+..
T Consensus       306 ~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~  385 (635)
T 4g8a_A          306 TNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSF  385 (635)
T ss_dssp             TTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBE
T ss_pred             cccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhcccccc
Confidence                                 001223333333222110                       123455566655554422


Q ss_pred             c-------------------------------------------------cCC-CC--CCcccEEecccCCCCCc-cccc
Q psy12423        160 L-------------------------------------------------IVS-PR--PARLQHLDISYNELESL-PDWI  186 (567)
Q Consensus       160 ~-------------------------------------------------~~~-~~--~~~L~~L~Ls~n~l~~l-p~~l  186 (567)
                      .                                                 ... .+  +.+++.++++.|.+..+ +..+
T Consensus       386 ~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~  465 (635)
T 4g8a_A          386 KGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF  465 (635)
T ss_dssp             EEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred             ccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence            1                                                 111 11  55677788888888754 5678


Q ss_pred             CCCcCCcEEECcCCCCC-CCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCC
Q psy12423        187 DTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKL  264 (567)
Q Consensus       187 ~~l~~L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L  264 (567)
                      ..++.|+.|++++|.+. .+++..+.. +++|++|+|++|+|+++ |..+.++++|++|+|++|+|+.+++..|.++++|
T Consensus       466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~-l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L  544 (635)
T 4g8a_A          466 NGLSSLEVLKMAGNSFQENFLPDIFTE-LRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL  544 (635)
T ss_dssp             TTCTTCCEEECTTCEEGGGEECSCCTT-CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTC
T ss_pred             ccchhhhhhhhhhcccccccCchhhhh-ccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCC
Confidence            88999999999999754 444455554 89999999999999986 5678999999999999999999999989999999


Q ss_pred             cEEEccCCcCCCCCCCCc-CC-ccceeecccCCccccCCcc
Q psy12423        265 KVLNISKNCLKMLPSLQK-GF-YLLNISQLRLPGFCNSDAL  303 (567)
Q Consensus       265 ~~L~Ls~N~l~~ip~~~~-~~-~~L~~~~l~~~~~~~~~~~  303 (567)
                      +.|+|++|+|+.+|+... .+ .+|..+++..|+|.|.|.+
T Consensus       545 ~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~  585 (635)
T 4g8a_A          545 QVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEH  585 (635)
T ss_dssp             CEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGG
T ss_pred             CEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCc
Confidence            999999999998876544 55 5789999999999777554

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=1.2e-26  Score=235.10  Aligned_cols=248  Identities=22%  Similarity=0.260  Sum_probs=191.2

Q ss_pred             EEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423          4 FRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG   82 (567)
Q Consensus         4 L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~   82 (567)
                      ++++.+.+..++ ..+..+++|++|+|++|.|+.+++..+.                                    .++
T Consensus        15 ~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~------------------------------------~l~   58 (317)
T 3o53_A           15 EKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLA------------------------------------PFT   58 (317)
T ss_dssp             ESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHT------------------------------------TCT
T ss_pred             eeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhh------------------------------------CCC
Confidence            445555555443 3356677899999999999988765532                                    345


Q ss_pred             CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCccccee-cCCCCCcEEEcCCCcccccc
Q psy12423         83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV-LNGSSLISVIAGNNKLQSLI  161 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~-~~~~~L~~L~l~~n~l~~~~  161 (567)
                      +|++|+|++|.+++...+..+++|++|++++|.++.++  ..++|++|++++|.+..++ ..+++|+.|++++|.++.+.
T Consensus        59 ~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~l~--~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~  136 (317)
T 3o53_A           59 KLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELL--VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLR  136 (317)
T ss_dssp             TCCEEECTTSCCEEEEEETTCTTCCEEECCSSEEEEEE--ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGG
T ss_pred             cCCEEECCCCcCCcchhhhhcCCCCEEECcCCcccccc--CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCcc
Confidence            78889999999887667888899999999999887754  3478999999999988776 34678888889888888887


Q ss_pred             CCCC--CCcccEEecccCCCCCcc-ccc-CCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCC
Q psy12423        162 VSPR--PARLQHLDISYNELESLP-DWI-DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI  237 (567)
Q Consensus       162 ~~~~--~~~L~~L~Ls~n~l~~lp-~~l-~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l  237 (567)
                      +..+  +++|++|++++|.++.++ ..+ ..+++|++|+|++|.++.++...+   +++|++|+|++|.++.+|..+..+
T Consensus       137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~l~~~~~~l  213 (317)
T 3o53_A          137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSA  213 (317)
T ss_dssp             GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGG
T ss_pred             chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccccccc---cccCCEEECCCCcCCcchhhhccc
Confidence            7666  788889999998888653 444 467888999999998887765543   778899999999888888778888


Q ss_pred             CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC--CCCCCCcCCccceeeccc
Q psy12423        238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK--MLPSLQKGFYLLNISQLR  293 (567)
Q Consensus       238 ~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~--~ip~~~~~~~~L~~~~l~  293 (567)
                      ++|++|+|++|.|+.+|.. +..+++|+.|++++|+++  .+|..+..+..|....+.
T Consensus       214 ~~L~~L~L~~N~l~~l~~~-~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          214 AGVTWISLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TTCSEEECTTSCCCEECTT-CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CcccEEECcCCcccchhhH-hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            8899999999988888775 467888899999999887  555555555555544443

>3kdj_B Protein phosphatase 2C 56; ABA, PYL1, abscisic acid signaling pathway, cell membr hydrolase, magnesium, manganese, metal-binding, nucleus; HET: A8S; 1.88A {Arabidopsis thaliana} PDB: 3nmn_B* 3jrq_A* 3ujk_A 3nmv_B 3ujl_B*

Probab=99.93  E-value=1.6e-25  Score=226.29  Aligned_cols=172  Identities=26%  Similarity=0.369  Sum_probs=143.1

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh-----------hhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEe
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV-----------KETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLS  369 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l-----------~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~  369 (567)
                      ..+|.++||+++...+.+....++..+.+....           .+...+++..+|..+++.+..... ..+++|++.+.
T Consensus        52 ~~~~~V~DG~GG~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~-~~~GtT~~~~~  130 (316)
T 3kdj_B           52 AHFFGVYDGHGGSQVANYCRERMHLALAEEIAKEKPMLSDGDTWLEKWKKALFNSFLRVDSEIESVAP-ETVGSTSVVAV  130 (316)
T ss_dssp             CEEEEEEEEESSSHHHHHHHHHHHHHHHHHHHHHCCCGGGTHHHHHHHHHHHHHHHHHHHHHGGGTSC-TTCEECEEEEE
T ss_pred             eEEEEEEeCCCcHHHHHHHHHHHHHHHHHHHHhhhcccccccchHHHHHHHHHHHHHHHHHHHhcccC-CCCCCcEEEEE
Confidence            678999999999999988888888776554221           123578888999999988755432 34556666666


Q ss_pred             ecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------------CCCCCCCCCCCCCc
Q psy12423        370 LHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------------LSPPVPPQGSCPLS  419 (567)
Q Consensus       370 ~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------------~~r~~g~~~~~~~~  419 (567)
                      +.+.    ++++||+||||+|++|+|+.++||+||+                              ++|++|+..+++++
T Consensus       131 i~~~----~l~vanvGDSR~yl~r~g~~~~lT~DH~~~~~~e~~ri~~~~g~v~~~~~~r~~g~l~~sRalGd~~~~~~~  206 (316)
T 3kdj_B          131 VFPS----HIFVANCGDSRAVLCRGKTALPLSVDHKPDREDEAARIEAAGGKVIQWNGARVFGVLAMSRSIGDRYLKPSI  206 (316)
T ss_dssp             ECSS----EEEEEEESSCEEEEEETTEEEESCCCCCTTSHHHHHHHHHTTCCEEESSSEEETTTBSCSBCEECGGGTTTS
T ss_pred             EECC----EEEEEEccCCEEEEEECCEecccCCCCCCCCHHHHHHHHHcCCeEEecCCceEcceeccccccCccccCCCc
Confidence            6665    8999999999999999999999999998                              37999998888999


Q ss_pred             cCCCceEEEEecCCCeEEEEEcCCCC-------------C------------------------------HHHHHHHHHH
Q psy12423        420 FPDPHVTEVMLHENDHFLILANKSVS-------------E------------------------------PVLAAKRIQD  456 (567)
Q Consensus       420 ~~~p~v~~~~l~~~d~~lil~sDGl~-------------~------------------------------~~~~a~~l~~  456 (567)
                      .++|++..+.+...|+||||||||||             .                              ++.+|++|++
T Consensus       207 ~~~pdv~~~~~~~~~d~llL~SDGl~d~l~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~Lv~  286 (316)
T 3kdj_B          207 IPDPEVTAVKRVKEDDCLILASDGVWDVMTDEEACEMARKRILLWHKKNAVAGGASLLADERRKEGKDPAAMSAAEYLSK  286 (316)
T ss_dssp             BCCCEEEEEECCTTEEEEEEECHHHHTSSCHHHHHHHHHHHHHHHTTC-----------------CCCHHHHHHHHHHHH
T ss_pred             CCCCceEEEEecCCCCEEEEEccCcccCCCHHHHHHHHHHHhhhhccccccccccccccccccccccCchHHHHHHHHHH
Confidence            99999999997778899999999999             1                              3468899999


Q ss_pred             HHHHcCCCCCcEEEEEEeCCC
Q psy12423        457 LAQSYGSEDNLSVLVLRFQGS  477 (567)
Q Consensus       457 ~a~~~g~~dnit~~vv~~~~~  477 (567)
                      .|+.+|+.||||||||++...
T Consensus       287 ~A~~~g~~DNiTvivv~l~~~  307 (316)
T 3kdj_B          287 LAIQRGSKDNISVVVVDLKPR  307 (316)
T ss_dssp             HHHHTTCCSCEEEEEEECSCC
T ss_pred             HHHHcCCCCCeEEEEEEccCC
Confidence            999999999999999999843

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.8e-24  Score=235.75  Aligned_cols=236  Identities=30%  Similarity=0.335  Sum_probs=200.5

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |++|+|++|.|+.||.   .+++|++|+|++|+|+.+|.    .++.|+.+          ++..+....++      ..
T Consensus        63 L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L----------~Ls~N~l~~l~------~~  119 (622)
T 3g06_A           63 ITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTSLPV----LPPGLLEL----------SIFSNPLTHLP------AL  119 (622)
T ss_dssp             CSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSCCCC----CCTTCCEE----------EECSCCCCCCC------CC
T ss_pred             CcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCcCCC----CCCCCCEE----------ECcCCcCCCCC------CC
Confidence            6899999999999997   57899999999999999997    34444443          11223333322      25


Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL  160 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~  160 (567)
                      +++|+.|++++|+++....  .+++|++|++++|.++.++. .+++|+.|++++|.++.++..+++|+.|++++|.++.+
T Consensus       120 l~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~~l~~-~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls~N~l~~l  196 (622)
T 3g06_A          120 PSGLCKLWIFGNQLTSLPV--LPPGLQELSVSDNQLASLPA-LPSELCKLWAYNNQLTSLPMLPSGLQELSVSDNQLASL  196 (622)
T ss_dssp             CTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCC
T ss_pred             CCCcCEEECCCCCCCcCCC--CCCCCCEEECcCCcCCCcCC-ccCCCCEEECCCCCCCCCcccCCCCcEEECCCCCCCCC
Confidence            6899999999999988653  35899999999999998753 56889999999999999997889999999999999987


Q ss_pred             cCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC
Q psy12423        161 IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL  240 (567)
Q Consensus       161 ~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  240 (567)
                      +..  +++|+.|++++|.++.+|..   +++|+.|+|++|.|+.+|.    . +++|+.|+|++|.|+.+|.   .+++|
T Consensus       197 ~~~--~~~L~~L~L~~N~l~~l~~~---~~~L~~L~Ls~N~L~~lp~----~-l~~L~~L~Ls~N~L~~lp~---~~~~L  263 (622)
T 3g06_A          197 PTL--PSELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLTSLPV----L-PSELKELMVSGNRLTSLPM---LPSGL  263 (622)
T ss_dssp             CCC--CTTCCEEECCSSCCSSCCCC---CTTCCEEECCSSCCSCCCC----C-CTTCCEEECCSSCCSCCCC---CCTTC
T ss_pred             CCc--cchhhEEECcCCcccccCCC---CCCCCEEEccCCccCcCCC----C-CCcCcEEECCCCCCCcCCc---ccccC
Confidence            643  58999999999999999864   4889999999999999982    2 7899999999999999988   67899


Q ss_pred             cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423        241 KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM  276 (567)
Q Consensus       241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~  276 (567)
                      +.|+|++|.|+.+|.. +.++++|+.|+|++|+++.
T Consensus       264 ~~L~Ls~N~L~~lp~~-l~~l~~L~~L~L~~N~l~~  298 (622)
T 3g06_A          264 LSLSVYRNQLTRLPES-LIHLSSETTVNLEGNPLSE  298 (622)
T ss_dssp             CEEECCSSCCCSCCGG-GGGSCTTCEEECCSCCCCH
T ss_pred             cEEeCCCCCCCcCCHH-HhhccccCEEEecCCCCCC
Confidence            9999999999999876 5799999999999999983

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.93  E-value=5.2e-24  Score=226.28  Aligned_cols=276  Identities=26%  Similarity=0.259  Sum_probs=155.3

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccch-----hhccccccccCCccccc
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAE-----EREEDFEQDEDGIIVER   75 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~-----~~~~~~~~~~~~l~~~~   75 (567)
                      |++|++++|.++.+|..   .++|++|++++|.++++|... ..++.|... .+.+..     ..+...+...+.+...+
T Consensus        73 l~~L~l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp~~~-~~L~~L~l~-~n~l~~l~~~~~~L~~L~L~~n~l~~lp  147 (454)
T 1jl5_A           73 AHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP-QSLKSLLVD-NNNLKALSDLPPLLEYLGVSNNQLEKLP  147 (454)
T ss_dssp             CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC-TTCCEEECC-SSCCSCCCSCCTTCCEEECCSSCCSSCC
T ss_pred             CCEEEecCCccccCCCC---cCCCCEEEccCCcCCcccccc-CCCcEEECC-CCccCcccCCCCCCCEEECcCCCCCCCc
Confidence            46788888888877762   357888888888887777532 333333321 111100     00111111111111122


Q ss_pred             CCCCCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCC
Q psy12423         76 REPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGN  154 (567)
Q Consensus        76 ~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~  154 (567)
                       .+..+++|++|++++|++++...  ...+|++|++++|.++.++ ++.+++|++|++++|.+++++....+|+.|++++
T Consensus       148 -~~~~l~~L~~L~l~~N~l~~lp~--~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~~l~~~~~~L~~L~l~~  224 (454)
T 1jl5_A          148 -ELQNSSFLKIIDVDNNSLKKLPD--LPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGN  224 (454)
T ss_dssp             -CCTTCTTCCEEECCSSCCSCCCC--CCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCCCCTTCCEEECCS
T ss_pred             -ccCCCCCCCEEECCCCcCcccCC--CcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCCcCCCCcCcccEEECcC
Confidence             24555666666666666554332  1235666666666665552 5556666666666666666554455666677766


Q ss_pred             CccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh
Q psy12423        155 NKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI  234 (567)
Q Consensus       155 n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~  234 (567)
                      |.++.++....+++|++|++++|.++.+|..   +++|+.|++++|.++.+|..     +++|++|++++|.++++|...
T Consensus       225 n~l~~lp~~~~l~~L~~L~l~~N~l~~l~~~---~~~L~~L~l~~N~l~~l~~~-----~~~L~~L~ls~N~l~~l~~~~  296 (454)
T 1jl5_A          225 NILEELPELQNLPFLTTIYADNNLLKTLPDL---PPSLEALNVRDNYLTDLPEL-----PQSLTFLDVSENIFSGLSELP  296 (454)
T ss_dssp             SCCSSCCCCTTCTTCCEEECCSSCCSSCCSC---CTTCCEEECCSSCCSCCCCC-----CTTCCEEECCSSCCSEESCCC
T ss_pred             CcCCcccccCCCCCCCEEECCCCcCCccccc---ccccCEEECCCCcccccCcc-----cCcCCEEECcCCccCcccCcC
Confidence            6666555322266677777777766666542   35677777777777666542     356666666666666533211


Q ss_pred             ----------------hCC-CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcc
Q psy12423        235 ----------------RQI-ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGF  297 (567)
Q Consensus       235 ----------------~~l-~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~  297 (567)
                                      ..+ ++|++|++++|+++++|..    +++|+.|++++|+++.+|.   .+.+|+.+++..|.+
T Consensus       297 ~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~lp~~----~~~L~~L~L~~N~l~~lp~---~l~~L~~L~L~~N~l  369 (454)
T 1jl5_A          297 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPE---LPQNLKQLHVEYNPL  369 (454)
T ss_dssp             TTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC----CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCC
T ss_pred             CcCCEEECcCCcCCcccCCcCcCCEEECCCCcccccccc----CCcCCEEECCCCccccccc---hhhhccEEECCCCCC
Confidence                            011 3566666666666666542    4667777777777777776   244555555555555


Q ss_pred             cc
Q psy12423        298 CN  299 (567)
Q Consensus       298 ~~  299 (567)
                      .+
T Consensus       370 ~~  371 (454)
T 1jl5_A          370 RE  371 (454)
T ss_dssp             SS
T ss_pred             Cc
Confidence            54

>1a6q_A Phosphatase 2C; catalytic mechanism, metalloenzyme, transductuin, hydrolase; 2.00A {Homo sapiens} SCOP: a.159.1.1 d.219.1.1 PDB: 3fxk_A 3fxj_A 3fxl_A* 3fxm_A* 3fxo_A

Probab=99.93  E-value=4.3e-25  Score=227.72  Aligned_cols=171  Identities=18%  Similarity=0.297  Sum_probs=142.7

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh--------hhhhhHHHHHHHHHHHHHHhhhc----ccccCceeEEEE
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV--------KETASDYMKYTMLTAHREIKDSL----HRYSLSATLCHL  368 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l--------~~~~~~~l~~a~l~~n~~i~~~~----~~~~~st~~~~~  368 (567)
                      ..+|.++|||++...+.+....++..+.....+        ...+.+++..+|..+++.+....    ....+++|++.+
T Consensus        53 ~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~af~~~n~~i~~~~~~~~~~~~~GtT~~~~  132 (382)
T 1a6q_A           53 WSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV  132 (382)
T ss_dssp             EEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEE
T ss_pred             eEEEEEEcCCCcHHHHHHHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCcceEEEE
Confidence            468999999999999999888888877643222        23347889999999999886543    123456666666


Q ss_pred             eecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCCC-----
Q psy12423        369 SLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGSC-----  416 (567)
Q Consensus       369 ~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~~-----  416 (567)
                      .+.+.    ++++||+||||+|++|+|+..+||+||+                           ++|++|+..++     
T Consensus       133 li~~~----~l~vanvGDSRayl~r~g~~~~LT~DHs~~~~~E~~RI~~~gg~v~~~Rv~g~l~ltRalGd~~~K~~~~~  208 (382)
T 1a6q_A          133 LISPQ----HTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGK  208 (382)
T ss_dssp             EECSS----EEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHHHHHHTTCCEETTEETTTBSCSBCEECGGGSCCTTC
T ss_pred             EEECC----eEEEEEcCCCeEEEEECCceEEeCCCCCCCCHHHHHHHHhcCcEEecccccCceeeeeecCcHhhcccccC
Confidence            66666    8999999999999999999999999997                           46788886542     


Q ss_pred             ----CCccCCCceEEEEec-CCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCcEEEE
Q psy12423        417 ----PLSFPDPHVTEVMLH-ENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNLSVLV  471 (567)
Q Consensus       417 ----~~~~~~p~v~~~~l~-~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dnit~~v  471 (567)
                          ++|+++|++..+.+. ++|+||||||||||                    +++.+|+.|++.|+.+|+.|||||||
T Consensus       209 ~~~~~~v~~~Pdv~~~~l~~~~dd~llLaSDGlwd~ls~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~g~~DNiTviv  288 (382)
T 1a6q_A          209 GPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVIL  288 (382)
T ss_dssp             CGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred             CCccCeeeeeeeEEEEEccCCCCeEEEEeccCccCCCChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCcCCEEEEE
Confidence                567899999999999 88899999999999                    57789999999999999999999999


Q ss_pred             EEeC
Q psy12423        472 LRFQ  475 (567)
Q Consensus       472 v~~~  475 (567)
                      |++.
T Consensus       289 v~~~  292 (382)
T 1a6q_A          289 ICFP  292 (382)
T ss_dssp             EECT
T ss_pred             EEec
Confidence            9998

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.93  E-value=1e-25  Score=227.88  Aligned_cols=212  Identities=20%  Similarity=0.182  Sum_probs=144.6

Q ss_pred             CCccEEEecC-CCCCCcc--ccCCCCCccEEEccCCCCCC-CC--CcccccCcEEEcccCccccee----cCCCCCcEEE
Q psy12423         82 GELTSVNLRS-NQLKGTI--ILGNYGNLTTLDVSENSIES-LD--LGALNRLESIKCSRNQLKTLV----LNGSSLISVI  151 (567)
Q Consensus        82 ~~L~~L~Ls~-n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~~--~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~  151 (567)
                      ++|++|+|++ |.+.+..  .+..+++|++|++++|.++. ++  +..+++|++|++++|.+....    ..+++|+.|+
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~  155 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGIT  155 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEE
Confidence            3555555553 5554322  35555555666665555552 22  455555666666666555221    2345666666


Q ss_pred             cCCCccccccCCCC--CC-cccEEecccCCCC-CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423        152 AGNNKLQSLIVSPR--PA-RLQHLDISYNELE-SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL  227 (567)
Q Consensus       152 l~~n~l~~~~~~~~--~~-~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l  227 (567)
                      +++|.+++..+..+  ++ +|++|++++|.++ .+|..+..+. |+.|++++|.++..++..+.. +++|+.|+|++|.+
T Consensus       156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSL  233 (313)
T ss_dssp             CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEE
T ss_pred             CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhc-CCCCCEEECCCCce
Confidence            66666664444333  44 7888888888888 6677777776 888999888888666666654 88889999998888


Q ss_pred             CCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCc
Q psy12423        228 TSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPG  296 (567)
Q Consensus       228 ~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~  296 (567)
                      +..+..+..+++|++|+|++|.|++..+..+..+++|+.|+|++|+++ .+|.. ..+++|..+++..|.
T Consensus       234 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             CCBGGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             eeecCcccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            876666778888999999999888444445678888999999999888 67765 677778777777765

>2i0o_A Ser/Thr phosphatase; beta sandwich, structural genomics, PSI, protei structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Anopheles gambiae}

Probab=99.93  E-value=2.3e-25  Score=223.88  Aligned_cols=171  Identities=16%  Similarity=0.273  Sum_probs=135.5

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhh-hhhhHHHHHHHHHHHHHHhhhc------------------ccccC
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVK-ETASDYMKYTMLTAHREIKDSL------------------HRYSL  361 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~-~~~~~~l~~a~l~~n~~i~~~~------------------~~~~~  361 (567)
                      ..++.++|||++...+.+....++..+.+..... ..+.+++..+|..+++.+....                  ....+
T Consensus        51 ~~l~~V~DGhGG~~~a~~as~~~~~~l~~~~~~~~~~~~~~l~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  130 (304)
T 2i0o_A           51 CSFFAVYDGHGGAEVAQYCSLHLPTFLKTVEAYGRKEFEKALKEAFLGFDATLLQEKVIEELKVLSGDSAGSDAEPGKDS  130 (304)
T ss_dssp             EEEEEEEECSSCSHHHHHHHHHHHHHHHHSHHHHTTCHHHHHHHHHHHHHHHTTSHHHHHHHHHHHCC-----CCTTTSC
T ss_pred             eEEEEEEcCCCCHHHHHHHHHHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHhhhhHHHHhhhccccccccccCCCCC
Confidence            5689999999999999999999988887654332 3457899999999998765421                  13345


Q ss_pred             ceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC----------------------------CCCCCCCC
Q psy12423        362 SATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT----------------------------LSPPVPPQ  413 (567)
Q Consensus       362 st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~----------------------------~~r~~g~~  413 (567)
                      ++|++.+.+.+.    .+++||+||||+|++|+|+.++||+||+                            ++|++|+.
T Consensus       131 GtT~~~~~i~~~----~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~e~~rI~~~gg~v~~~~rv~g~l~ltRalGd~  206 (304)
T 2i0o_A          131 GCTAVVALLHGK----DLYVANAGDSRCVVCRNGKALEMSFDHKPEDTVEYQRIEKAGGRVTLDGRVNGGLNLSRAIGDH  206 (304)
T ss_dssp             EEEEEEEEEETT----EEEEEEESSCEEEEEETTEEEECCCCCCTTSHHHHHHHHHTTCCBCTTSCBTTSCSCSBCEECG
T ss_pred             CccEEEEEEECC----EEEEEEccCcEEEEEECCEEEEcCCCcCCcCHHHHHHHHhCCCEEEeCCeEcCceeccccccCH
Confidence            666666666665    8999999999999999999999999997                            46778876


Q ss_pred             CCC---------CCccCCCceEEEEecCCCeEEEEEcCCCC---------------------CHHHHHHHHHHHHHH---
Q psy12423        414 GSC---------PLSFPDPHVTEVMLHENDHFLILANKSVS---------------------EPVLAAKRIQDLAQS---  460 (567)
Q Consensus       414 ~~~---------~~~~~~p~v~~~~l~~~d~~lil~sDGl~---------------------~~~~~a~~l~~~a~~---  460 (567)
                      .++         ++|+++||+..+++.++|.||||||||||                     +++++|++|++.|++   
T Consensus       207 ~~k~~~~l~~~~~~v~~~pdi~~~~l~~~D~fllL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~~a~~L~~~a~~~~~  286 (304)
T 2i0o_A          207 GYKMNKSLPAEEQMISALPDIEKITVGPEDEFMVLACDGIWNFMTSEQVVQFVQERINKPGMKLSKICEELFDHCLAPHT  286 (304)
T ss_dssp             GGCCCTTSCGGGSSSBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHC----
T ss_pred             HHccCccCCccCCeEEeeCeEEEEEcCCCCeEEEEECcCccccCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHhhh
Confidence            542         46789999999999999999999999999                     367789999999987   


Q ss_pred             ---cCCCCCcEEEEEEeC
Q psy12423        461 ---YGSEDNLSVLVLRFQ  475 (567)
Q Consensus       461 ---~g~~dnit~~vv~~~  475 (567)
                         .|+.||||||||+|+
T Consensus       287 ~g~~g~~DNiTvivv~~~  304 (304)
T 2i0o_A          287 RGDGTGCDNMTAIIVQFK  304 (304)
T ss_dssp             --------CEEEEEEEEC
T ss_pred             ccCCCCCCCeEEEEEEeC
Confidence               468999999999974

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.92  E-value=2.4e-24  Score=228.29  Aligned_cols=233  Identities=18%  Similarity=0.276  Sum_probs=200.4

Q ss_pred             EEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423          3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG   82 (567)
Q Consensus         3 ~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~   82 (567)
                      .++.+++.++.+|..+.  ++++.|+|++|.|+.++...                                    +..++
T Consensus        47 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~------------------------------------~~~l~   88 (440)
T 3zyj_A           47 KVICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNS------------------------------------FKHLR   88 (440)
T ss_dssp             EEECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTT------------------------------------TSSCS
T ss_pred             EEEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHH------------------------------------hhCCC
Confidence            56667777777776554  57778888777777665433                                    24566


Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG  153 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~  153 (567)
                      +|++|+|++|.++...  .|.++++|++|+|++|+++.++   +..+++|++|++++|.+..++.    .+++|+.|+++
T Consensus        89 ~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~  168 (440)
T 3zyj_A           89 HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLG  168 (440)
T ss_dssp             SCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCC
Confidence            8999999999998765  6889999999999999999874   6788999999999999998763    57899999999


Q ss_pred             C-CccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423        154 N-NKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL  230 (567)
Q Consensus       154 ~-n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l  230 (567)
                      + +.+..++...+  +++|++|+|++|.++.+|. +..+++|+.|+|++|.++.++...|.. +++|+.|+|++|.|+.+
T Consensus       169 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~  246 (440)
T 3zyj_A          169 ELKRLSYISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKLDELDLSGNHLSAIRPGSFQG-LMHLQKLWMIQSQIQVI  246 (440)
T ss_dssp             CCTTCCEECTTTTTTCSSCCEEECTTSCCSSCCC-CTTCSSCCEEECTTSCCCEECTTTTTT-CTTCCEEECTTCCCCEE
T ss_pred             CCCCcceeCcchhhcccccCeecCCCCcCccccc-cCCCcccCEEECCCCccCccChhhhcc-CccCCEEECCCCceeEE
Confidence            8 56666666555  8999999999999999985 889999999999999999987777776 99999999999999986


Q ss_pred             c-hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        231 P-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       231 p-~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      + ..+..+++|+.|+|++|+|+.++...|..+++|+.|+|++|++.
T Consensus       247 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  292 (440)
T 3zyj_A          247 ERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN  292 (440)
T ss_dssp             CTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred             ChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence            4 57889999999999999999999999999999999999999886

>2iq1_A Protein phosphatase 2C kappa, PPM1K; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Homo sapiens}

Probab=99.92  E-value=6.5e-25  Score=217.34  Aligned_cols=172  Identities=20%  Similarity=0.345  Sum_probs=138.7

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcc------cccCceeEEEEeec-Cc
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLH------RYSLSATLCHLSLH-PV  373 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~------~~~~st~~~~~~~~-~~  373 (567)
                      ..++.++||+++...+.+....++..+.+.......+.+++..+|..+++.+.....      ...+++|++.+.+. ..
T Consensus        35 ~~l~~V~DG~GG~~~a~~as~~~~~~l~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~~~GtT~~~~~i~~~~  114 (274)
T 2iq1_A           35 VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGI  114 (274)
T ss_dssp             EEEEEEEEEESSTHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHC---CCGGGCEECEEEEEEETTT
T ss_pred             eEEEEEECCCCCHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHhhhccccCCCCCCCcEEEEEEECCC
Confidence            468999999999988888888887776654333445688999999999998865431      23455555554443 33


Q ss_pred             cceEEEEEEEecCceEEEEeCCeeeeCCCCCCC--------------------------------CCCCCCCCCCC-Ccc
Q psy12423        374 THRYMLHIASVGEAKAILCRQAGSLTFTHAPTL--------------------------------SPPVPPQGSCP-LSF  420 (567)
Q Consensus       374 ~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~--------------------------------~r~~g~~~~~~-~~~  420 (567)
                          .+++||+||||+|++|+|+..+||+||+.                                +|++|+..+++ ++.
T Consensus       115 ----~l~~anvGDSR~~l~r~g~~~~lT~DH~~~~~~E~~Ri~~~gG~v~~~~~~~~~~~~~~~ltralGd~~~k~~~v~  190 (274)
T 2iq1_A          115 ----ELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVI  190 (274)
T ss_dssp             ----EEEEEEESSCEEEEEETTEEEECCCCCCTTSHHHHHHHHHTTCCEEECTTSCEEETTTBSCSBCEECGGGTTTTCB
T ss_pred             ----EEEEEEecCceEEEEeCCEeeECCCCCCCcCHHHHHHHHHcCCEEEcCCCCceeECCeEeeccccCChhhccCCEE
Confidence                78999999999999999999999999983                                45566655443 478


Q ss_pred             CCCceEEEEecCC-CeEEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCC
Q psy12423        421 PDPHVTEVMLHEN-DHFLILANKSVS----------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG  476 (567)
Q Consensus       421 ~~p~v~~~~l~~~-d~~lil~sDGl~----------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~  476 (567)
                      ++|++..+++.++ |+||||||||||                +|+++|+.|++.|+.+|+.|||||+||++..
T Consensus       191 ~~pdi~~~~l~~g~d~~lll~SDGl~d~l~~~ei~~~~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~~~~  263 (274)
T 2iq1_A          191 AEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGA  263 (274)
T ss_dssp             CCCEEEEEECCTTTEEEEEEECHHHHTTCCHHHHHHHHHTSSSHHHHHHHHHHHHHHTTCCSCEEEEEEECTT
T ss_pred             eCCEEEEEEeCCCCCcEEEEEccCcccCCCHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCCCeEEEEEEccC
Confidence            9999999999984 679999999999                6889999999999999999999999999983

>3d8k_A PP2C, protein phosphatase 2C; nysgrc, PSI-II, STR genomics, protein structure initiative, NEW YORK structural research consortium, nysgxrc; 2.71A {Toxoplasma gondii}

Probab=99.92  E-value=6.8e-25  Score=225.64  Aligned_cols=172  Identities=17%  Similarity=0.180  Sum_probs=139.1

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeec---------
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLH---------  371 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~---------  371 (567)
                      ..+|+++|||++..++.++...++..+.+..   ..+.+++..+|..+++.+.......+.+++++.+...         
T Consensus        48 ~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~---~~~~~al~~af~~~d~~l~~~~~~~GtTa~~~~i~~~~~~~~~~~~  124 (377)
T 3d8k_A           48 TRVHAMFDGFQGRHSAMWLAQNVMNYLNDLR---DVNEEEITRQFERMDGDLRAANLPGGSSALIIFVRYEKKPTEARVV  124 (377)
T ss_dssp             EEEEEEEEBSSSSHHHHHHHHHHHHHHTTCS---SSSHHHHHHHHHHHHHHHHHHTCCCCBCEEEEEEEEESSCCCEEEE
T ss_pred             eEEEEEEcCCCcHHHHHHHHHHHHHHHHHhc---ccHHHHHHHHHHHHHHHHHhcccCCCCceEEEEEeccccccccccc
Confidence            4689999999999999999999998886532   3457899999999999988765443333333322110         


Q ss_pred             -----Cc-------------------------------cceEEEEEEEecCceEEEEeCCeeeeCCCCCC----------
Q psy12423        372 -----PV-------------------------------THRYMLHIASVGEAKAILCRQAGSLTFTHAPT----------  405 (567)
Q Consensus       372 -----~~-------------------------------~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~----------  405 (567)
                           |.                               ....++++||+||||||++|+|+.++||+||+          
T Consensus       125 g~~~~p~~~~~~~~~~~~~g~ta~a~vali~~~~p~~~~~~~~l~vanvGDSRa~l~r~g~~~~LT~DH~~~~~~E~~RI  204 (377)
T 3d8k_A          125 GRQIVPEGAKEFTSVAEALGGPLMPVVAMNFRRDPRAAKGIYTIHVASLGNSRCVLKSGRTAIHLSTPHTASSHKERHRV  204 (377)
T ss_dssp             TTEEECCC---CCCHHHHSSCCCCCCEEECGGGCGGGTTCEEEEEEEEESSCEEEEEETTEEEESSCCCSSSSHHHHHHH
T ss_pred             cccccccccccccccccccccccccceeeecccccccccCCCeEEEEEcccceEEEEECCEEEECCcCCCCCCHHHHHHH
Confidence                 00                               00238999999999999999999999999997          


Q ss_pred             ---------------------CCCCCCCCCCC---------CCccCCCceEEEEecCCCeEEEEEcCCCC----------
Q psy12423        406 ---------------------LSPPVPPQGSC---------PLSFPDPHVTEVMLHENDHFLILANKSVS----------  445 (567)
Q Consensus       406 ---------------------~~r~~g~~~~~---------~~~~~~p~v~~~~l~~~d~~lil~sDGl~----------  445 (567)
                                           ++|++|+..++         ++++++|||..++++++| ||||||||||          
T Consensus       205 ~~~gg~v~~~~g~~rv~G~l~vtRalGd~~~k~~~~~~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDGl~d~ls~~e~v~  283 (377)
T 3d8k_A          205 QAAGGVFTTVNGELLLGGVVPMTRAFGSFDFKKGGQGKLQQDLVSAVPDVTTFFAYPGD-DIVAGTAGAFAHFRSHAAIA  283 (377)
T ss_dssp             HTTTCCEEECSSSEEETTTBSCSBCSSCGGGSCC---CCSSCSSBCCCEEEEEEECTTC-EEEEECGGGGCSCSSHHHHH
T ss_pred             HHcCCEEEecCCcEEEcCceecceeecChhhhcccccccccCccccCCcEEEEEcCCCC-EEEEEECCcccCCCcHHHHH
Confidence                                 47888887653         578999999999999875 6889999999          


Q ss_pred             -----------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCC
Q psy12423        446 -----------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG  476 (567)
Q Consensus       446 -----------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~  476 (567)
                                 +++.+|++|++.|+.+|+.||||||||++..
T Consensus       284 ~v~~~~~~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~  325 (377)
T 3d8k_A          284 AAIALYPVSPETVLDAAKAMVVNAKRRKVTKNISTFVRHLPE  325 (377)
T ss_dssp             HHHTTSCCCGGGHHHHHHHHHHTTTTSSCCSCCCEEEEECCS
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEecC
Confidence                       3567899999999999999999999999973

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.92  E-value=4.5e-24  Score=227.03  Aligned_cols=233  Identities=19%  Similarity=0.262  Sum_probs=200.7

Q ss_pred             EEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423          3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG   82 (567)
Q Consensus         3 ~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~   82 (567)
                      .++.+++.++.+|..+.  ++|++|+|++|.|+.+++..+                                    ..++
T Consensus        58 ~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~------------------------------------~~l~   99 (452)
T 3zyi_A           58 KVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTF------------------------------------RHLH   99 (452)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTT------------------------------------TTCT
T ss_pred             EEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHc------------------------------------CCCC
Confidence            56667777777776554  578888888887776654332                                    4566


Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG  153 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~  153 (567)
                      +|++|+|++|.+++..  .+.++++|++|+|++|.++.++   +..+++|++|++++|.+..++.    .+++|+.|+++
T Consensus       100 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~  179 (452)
T 3zyi_A          100 HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLG  179 (452)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCC
Confidence            8999999999999765  6889999999999999999875   6778999999999999998763    57899999999


Q ss_pred             C-CccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423        154 N-NKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL  230 (567)
Q Consensus       154 ~-n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l  230 (567)
                      + +.+..++...+  +++|++|+|++|.++.+|. +..+++|+.|+|++|.++.+++..+.. +++|+.|+|++|.++.+
T Consensus       180 ~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~  257 (452)
T 3zyi_A          180 ELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPN-LTPLVGLEELEMSGNHFPEIRPGSFHG-LSSLKKLWVMNSQVSLI  257 (452)
T ss_dssp             CCTTCCEECTTTTTTCTTCCEEECTTSCCSSCCC-CTTCTTCCEEECTTSCCSEECGGGGTT-CTTCCEEECTTSCCCEE
T ss_pred             CCCCccccChhhccCCCCCCEEECCCCccccccc-ccccccccEEECcCCcCcccCcccccC-ccCCCEEEeCCCcCceE
Confidence            8 56777766555  8899999999999999975 888999999999999999988877776 99999999999999985


Q ss_pred             -chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        231 -PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       231 -p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                       +..+..+++|+.|+|++|+|+.+|...|..+++|+.|+|++|++.
T Consensus       258 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~  303 (452)
T 3zyi_A          258 ERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN  303 (452)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred             CHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence             557899999999999999999999999999999999999999886

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.6e-25  Score=240.15  Aligned_cols=238  Identities=22%  Similarity=0.261  Sum_probs=200.5

Q ss_pred             cCCccCCC----CCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEE
Q psy12423         13 EFPGNQDS----FPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVN   88 (567)
Q Consensus        13 ~lp~~~~~----l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~   88 (567)
                      .+|..+..    +++|++|+|++|.|+.+++..+                                    ..+++|++|+
T Consensus        21 ~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~------------------------------------~~l~~L~~L~   64 (487)
T 3oja_A           21 SLKQALASLRQSAWNVKELDLSGNPLSQISAADL------------------------------------APFTKLELLN   64 (487)
T ss_dssp             THHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGG------------------------------------TTCTTCCEEE
T ss_pred             hhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHH------------------------------------hCCCCCCEEE
Confidence            45554444    3489999999999998876543                                    2355899999


Q ss_pred             ecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceec-CCCCCcEEEcCCCccccccCCCC--
Q psy12423         89 LRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL-NGSSLISVIAGNNKLQSLIVSPR--  165 (567)
Q Consensus        89 Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~-~~~~L~~L~l~~n~l~~~~~~~~--  165 (567)
                      |++|.+++..++..+++|++|+|++|.++.++.  .++|++|++++|.+..++. .+++|+.|++++|.+++..+..+  
T Consensus        65 Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l~~--~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~  142 (487)
T 3oja_A           65 LSSNVLYETLDLESLSTLRTLDLNNNYVQELLV--GPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGC  142 (487)
T ss_dssp             CTTSCCEEEEECTTCTTCCEEECCSSEEEEEEE--CTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGG
T ss_pred             eeCCCCCCCcccccCCCCCEEEecCCcCCCCCC--CCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcC
Confidence            999999887789999999999999999887653  3899999999999998774 46899999999999999887766  


Q ss_pred             CCcccEEecccCCCCCc-ccccC-CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEE
Q psy12423        166 PARLQHLDISYNELESL-PDWID-TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL  243 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~l-p~~l~-~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  243 (567)
                      +++|+.|+|++|.++.+ |..+. .+++|+.|+|++|.|+.++...+   +++|+.|+|++|.|+++|..+..+++|+.|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~~~~---l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L  219 (487)
T 3oja_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV---FAKLKTLDLSSNKLAFMGPEFQSAAGVTWI  219 (487)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEECCCC---CTTCCEEECCSSCCCEECGGGGGGTTCSEE
T ss_pred             CCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccccccccc---CCCCCEEECCCCCCCCCCHhHcCCCCccEE
Confidence            88999999999999964 55665 78999999999999998866543   889999999999999998889999999999


Q ss_pred             EccCCCCCCCchhhhcCCCCCcEEEccCCcCC--CCCCCCcCCccceeecc
Q psy12423        244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLK--MLPSLQKGFYLLNISQL  292 (567)
Q Consensus       244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~--~ip~~~~~~~~L~~~~l  292 (567)
                      +|++|.|+.+|.. +..+++|+.|++++|++.  .+|..+..+..+....+
T Consensus       220 ~Ls~N~l~~lp~~-l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~  269 (487)
T 3oja_A          220 SLRNNKLVLIEKA-LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK  269 (487)
T ss_dssp             ECTTSCCCEECTT-CCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHH
T ss_pred             EecCCcCcccchh-hccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEec
Confidence            9999999999886 578999999999999998  67766666666555444

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.92  E-value=6.1e-24  Score=211.68  Aligned_cols=215  Identities=28%  Similarity=0.335  Sum_probs=156.9

Q ss_pred             cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK   81 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l   81 (567)
                      ++++.+++.++.+|..+  .++|++|+|++|.|+.+++..+                                    ..+
T Consensus        14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~------------------------------------~~~   55 (285)
T 1ozn_A           14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASF------------------------------------RAC   55 (285)
T ss_dssp             CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTT------------------------------------TTC
T ss_pred             eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHc------------------------------------ccC
Confidence            35677777777777544  3577777777777776654332                                    234


Q ss_pred             CCccEEEecCCCCCCcc--ccCCCCCccEEEccCCC-CCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423         82 GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENS-IESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN  155 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~-l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n  155 (567)
                      ++|++|+|++|.+++..  .+..+++|++|++++|. ++.++   +..+++|++|+++                    +|
T Consensus        56 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~--------------------~n  115 (285)
T 1ozn_A           56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLD--------------------RC  115 (285)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECT--------------------TS
T ss_pred             CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECC--------------------CC
Confidence            46777777777776543  56667777777777775 65552   3444455554444                    44


Q ss_pred             ccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-c
Q psy12423        156 KLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-P  231 (567)
Q Consensus       156 ~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p  231 (567)
                      .++.+.+..+  +++|++|++++|.++.++. .+..+++|++|++++|.++.++...+.. +++|+.|+|++|.++.+ |
T Consensus       116 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~  194 (285)
T 1ozn_A          116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHP  194 (285)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECT
T ss_pred             cCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcC-ccccCEEECCCCcccccCH
Confidence            4444444333  6788888888888887764 5788889999999999998888776665 88899999999988875 6


Q ss_pred             hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        232 SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       232 ~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      ..+..+++|+.|++++|.|+.+++..+..+++|+.|++++|++.
T Consensus       195 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  238 (285)
T 1ozn_A          195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (285)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             hHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCcc
Confidence            67888889999999999999988887888999999999999876

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.92  E-value=1.9e-24  Score=217.64  Aligned_cols=230  Identities=22%  Similarity=0.266  Sum_probs=175.2

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC-----CCcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL-----DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN  155 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n  155 (567)
                      +|++|+|++|+++...  .+..+++|++|++++|.++.+     .+..+++|++|++++|.+..++              
T Consensus        29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~--------------   94 (306)
T 2z66_A           29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMS--------------   94 (306)
T ss_dssp             TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEE--------------
T ss_pred             CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccCh--------------
Confidence            6777777777777655  366777777777777777643     1334556666666666554432              


Q ss_pred             ccccccCCCC-CCcccEEecccCCCCCccc--ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC--C
Q psy12423        156 KLQSLIVSPR-PARLQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS--L  230 (567)
Q Consensus       156 ~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~--l  230 (567)
                            .... +++|++|++++|.++.++.  .+..+++|++|++++|.+..++...+.. +++|++|+|++|.+++  +
T Consensus        95 ------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~  167 (306)
T 2z66_A           95 ------SNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNG-LSSLEVLKMAGNSFQENFL  167 (306)
T ss_dssp             ------EEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTT-CTTCCEEECTTCEEGGGEE
T ss_pred             ------hhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhccc-CcCCCEEECCCCccccccc
Confidence                  2211 6789999999999998864  7899999999999999999877776665 8999999999999986  7


Q ss_pred             chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccC--Ccc----
Q psy12423        231 PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNS--DAL----  303 (567)
Q Consensus       231 p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~--~~~----  303 (567)
                      |..+..+++|++|+|++|.++.+++..+..+++|+.|+|++|+++.+|.. +..+.+|..+++..|.+.+.  ..+    
T Consensus       168 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  247 (306)
T 2z66_A          168 PDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP  247 (306)
T ss_dssp             CSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCC
T ss_pred             hhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhh
Confidence            88899999999999999999999888889999999999999999998874 45678888888888877654  122    


Q ss_pred             --eeeccCCCCchhhhHHhhhhHHHHHhhhhh
Q psy12423        304 --IGIFDSGDNGDIASTLVQSIPRILLEERTV  333 (567)
Q Consensus       304 --~~~~dg~~~~~is~~l~~~lP~~l~~~~~l  333 (567)
                        ...++-.++...+.+-..+++.|+.+....
T Consensus       248 ~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~  279 (306)
T 2z66_A          248 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQL  279 (306)
T ss_dssp             TTCCEEECTTCCEECSGGGHHHHHHHHHTGGG
T ss_pred             ccCCEEEccCCCeecccChHHHHHHHHhhhhh
Confidence              223444666666666666777777665543

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=6.5e-26  Score=229.72  Aligned_cols=228  Identities=17%  Similarity=0.234  Sum_probs=197.5

Q ss_pred             CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|.++.++ ..|..+++|++|+|++|.++++++ +                                     .
T Consensus        36 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~-------------------------------------~   77 (317)
T 3o53_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-------------------------------------E   77 (317)
T ss_dssp             CSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-E-------------------------------------T
T ss_pred             CCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-h-------------------------------------h
Confidence            689999999999886 579999999999999999986553 1                                     2


Q ss_pred             CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceec----CCCCCcEEEcCCC
Q psy12423         80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL----NGSSLISVIAGNN  155 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~~n  155 (567)
                      .+++|++|++++|.+++..   ..++|++|++++|.++.++...+++|++|++++|+++.+..    .+++|+.|++++|
T Consensus        78 ~l~~L~~L~Ls~n~l~~l~---~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (317)
T 3o53_A           78 SLSTLRTLDLNNNYVQELL---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (317)
T ss_dssp             TCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSCCSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTS
T ss_pred             hcCCCCEEECcCCcccccc---CCCCcCEEECCCCccCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCC
Confidence            3568999999999887644   34899999999999999887788999999999999988753    4688999999999


Q ss_pred             ccccccCCCC---CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423        156 KLQSLIVSPR---PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS  232 (567)
Q Consensus       156 ~l~~~~~~~~---~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~  232 (567)
                      .++...+..+   +++|++|+|++|.++.++.. ..+++|++|+|++|.++.+|..+..  +++|+.|+|++|.|+.+|.
T Consensus       155 ~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~l~~L~~L~Ls~N~l~~l~~~~~~--l~~L~~L~L~~N~l~~l~~  231 (317)
T 3o53_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQ-VVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEK  231 (317)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEECC-CCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECTTSCCCEECT
T ss_pred             CCCcccHHHHhhccCcCCEEECCCCcCcccccc-cccccCCEEECCCCcCCcchhhhcc--cCcccEEECcCCcccchhh
Confidence            9998876654   68999999999999988653 3589999999999999999888543  8999999999999999999


Q ss_pred             hhhCCCCCcEEEccCCCCC-CCchhhhcCCCCCcEEEccCC
Q psy12423        233 LIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKN  272 (567)
Q Consensus       233 ~~~~l~~L~~L~Ls~N~l~-~l~~~~l~~l~~L~~L~Ls~N  272 (567)
                      .+..+++|+.|++++|.+. ...+.++..+++|+.|++++|
T Consensus       232 ~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence            9999999999999999999 556667789999999999954

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.92  E-value=3.4e-24  Score=218.07  Aligned_cols=204  Identities=22%  Similarity=0.235  Sum_probs=126.5

Q ss_pred             CCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccc
Q psy12423         82 GELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQ  158 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~  158 (567)
                      ++|++|+|++|.++..+ .++.+++|++|++++|.++.++  +..+++|++|++++|++....+.  .+....+...   
T Consensus       104 ~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~--~~~~~~~~~~---  178 (328)
T 4fcg_A          104 SHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPE--PLASTDASGE---  178 (328)
T ss_dssp             TTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCS--CSEEEC-CCC---
T ss_pred             CCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccCh--hHhhccchhh---
Confidence            35666666666666433 4556666666666666666553  55566666666666543322111  0111100000   


Q ss_pred             cccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC-CchhhhCC
Q psy12423        159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQI  237 (567)
Q Consensus       159 ~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l  237 (567)
                          ...+++|++|+|++|.++.+|..+..+++|++|+|++|.++.+|..+..  +++|++|+|++|.+.+ +|..+..+
T Consensus       179 ----~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~--l~~L~~L~Ls~n~~~~~~p~~~~~l  252 (328)
T 4fcg_A          179 ----HQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSALGPAIHH--LPKLEELDLRGCTALRNYPPIFGGR  252 (328)
T ss_dssp             ----EEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGG--CTTCCEEECTTCTTCCBCCCCTTCC
T ss_pred             ----hccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCcCchhhcc--CCCCCEEECcCCcchhhhHHHhcCC
Confidence                0015677777777777777777777777777777777777777765443  7777777777776654 66677777


Q ss_pred             CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCc
Q psy12423        238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPG  296 (567)
Q Consensus       238 ~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~  296 (567)
                      ++|++|+|++|.+....+..+.++++|+.|+|++|++. .+|..+..++.+....+..+.
T Consensus       253 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~  312 (328)
T 4fcg_A          253 APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL  312 (328)
T ss_dssp             CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred             CCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence            77777777777655333333567777777777776654 777777777777666665443

>2isn_A NYSGXRC-8828Z, phosphatase; pathogenic strain, praseodymium, sulfate structural genomics, PSI-2, protein structure initiative; 1.90A {Toxoplasma gondii}

Probab=99.91  E-value=2.4e-24  Score=220.86  Aligned_cols=173  Identities=20%  Similarity=0.246  Sum_probs=135.9

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcc-cccCceeEEEEeecC----c--
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLH-RYSLSATLCHLSLHP----V--  373 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~-~~~~st~~~~~~~~~----~--  373 (567)
                      ..+|++||||++..++.++...++..+.+..   ..+.+.+..+|..+++.+..... ...++++++.+.+..    .  
T Consensus        43 ~~lf~VfDGHGG~~as~~a~~~l~~~l~~~~---~~~~~~l~~a~~~~d~~i~~~~~~~~~~GtT~v~~~i~~~~~p~~~  119 (364)
T 2isn_A           43 VRIKAVFDGHAGEATSQYCAKHAAKHLGKLS---EFTFAEVKKACLSLDAEIIRKLGPKHVAGSTGIIVAIERLSAPVVE  119 (364)
T ss_dssp             EEEEEEEEEESCSHHHHHHHHHHHHHHTTCS---SCCHHHHHHHHHHHHHHHHHHHCSSSCCEECEEEEEEEECSSCEEE
T ss_pred             eEEEEEEECCCCHHHHHHHHHHHHHHHHHhh---cccHHHHHHHHHHHHHHHHHhcccCCCCCcceehhhhhcccccccc
Confidence            5689999999999999999999998876532   23467899999999998855432 233444444333210    0  


Q ss_pred             --------------------------------------------------cceEEEEEEEecCceEEEE-eCCeeeeCCC
Q psy12423        374 --------------------------------------------------THRYMLHIASVGEAKAILC-RQAGSLTFTH  402 (567)
Q Consensus       374 --------------------------------------------------~~~~~l~~a~~Gdsr~~l~-r~~~~~~lt~  402 (567)
                                                                        ....++++||+||||+|++ |+|+..+||+
T Consensus       120 ~~~g~~~~~~~~~~~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~l~vanvGDSRayl~~r~g~~~~LT~  199 (364)
T 2isn_A          120 NVVGREIVPRAHEETFVPLEKLIQEEEEAEHPELVGRYPRVPDVQQKTIPAGSFLVTAINIGDSRATLIHSDGGLTRLSK  199 (364)
T ss_dssp             EEETTEECCC-----CCCHHHHHHHHHHC-----CCSSCCCCCCEEEEECTTCEEEEEEEESSCEEEEECTTSCEEECCC
T ss_pred             ccccccccccccccchhhhhhhhhhhhhcccccccccccccccccccccccCccEEEEEECccCEEEEEeeCCEEEEcCc
Confidence                                                              0013799999999999999 6899999999


Q ss_pred             CCC------------------------------CCCCCCCCCCC---------CCccCCCceEEEEecCCCeEEEEEcCC
Q psy12423        403 APT------------------------------LSPPVPPQGSC---------PLSFPDPHVTEVMLHENDHFLILANKS  443 (567)
Q Consensus       403 dh~------------------------------~~r~~g~~~~~---------~~~~~~p~v~~~~l~~~d~~lil~sDG  443 (567)
                      ||+                              ++|++|+..++         ++++++|||..+.+.++| ||||||||
T Consensus       200 DH~~~~~~e~~rI~~~gG~v~~~~~~rv~g~l~ltRalGd~~~k~~~~l~~~~~~v~~~Pdv~~~~l~~~D-~llL~SDG  278 (364)
T 2isn_A          200 DHKPNHPTEASRIEKAGGSVETFDVPRVDGVLALSRAFGDSDFKMNPNLPPEEQKVIAVPDVRQFYALSSD-LLLLACDG  278 (364)
T ss_dssp             CCCTTSHHHHHHHHHTTCCEEESSSEEETTTBSCSBCEECGGGSCCCSSCGGGSSSBCCCEEEEEEECTTC-EEEEECHH
T ss_pred             CCCCCCHHHHHHHHHcCCeEecCCCcccCCceeeEEEecchhhccccccCcccCceEEEeEEEEEECCCCC-EEEEEcCC
Confidence            997                              36777876543         467899999999999876 89999999


Q ss_pred             CC-----------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423        444 VS-----------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGS  477 (567)
Q Consensus       444 l~-----------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~  477 (567)
                      ||                       +++++|++|++.|+.+|+.||||||||++...
T Consensus       279 l~d~l~~~~~~v~~~~~~~~~~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~~  335 (364)
T 2isn_A          279 VYEPSGMDWAYVRDLTVAEMQRSKGDLEEVAARVMDYAYDMNSQDNISVMLVAFHNQ  335 (364)
T ss_dssp             HHCSSSCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECSS
T ss_pred             CCCCCCCCHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEcCCC
Confidence            99                       35678899999999999999999999999743

>2irm_A Mitogen-activated protein kinase kinase kinase 7 interacting protein 1; TAK1-binding protein, TAB1; 3.00A {Anopheles gambiae}

Probab=99.91  E-value=1.1e-24  Score=223.71  Aligned_cols=171  Identities=15%  Similarity=0.259  Sum_probs=139.2

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhh----hhhhhhhHHHHHHHHHHHHHHhhhc--------------------
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEER----TVKETASDYMKYTMLTAHREIKDSL--------------------  356 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~----~l~~~~~~~l~~a~l~~n~~i~~~~--------------------  356 (567)
                      ..+|+++|||++...+.+....++..+.+..    .....+.+++..+|..+++.+....                    
T Consensus        50 ~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~l~~~~~~~~~~~~l~~a~~~~d~~i~~~~~~~~~~~~~~~~~~~~~g~~  129 (358)
T 2irm_A           50 TSLYAILSGHNGVTVAENALQEMAAELLLGQLNVCNTDEAVKELIRQSFMSVEKGYFDSINPHVATKTAIQLHLSADGMN  129 (358)
T ss_dssp             EEEEEEEEEESCSHHHHHHHHHHHHHSSSSTTTTCCSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHTTC-----
T ss_pred             EEEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHHHHHHHHhhhhccccccccccccccc
Confidence            5689999999999999999999998876521    1223457899999999998775421                    


Q ss_pred             -------------------ccccCceeEEEEeecCccceEEEEEEEecCceEEEEeC---C--eeeeCCCCCC-------
Q psy12423        357 -------------------HRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQ---A--GSLTFTHAPT-------  405 (567)
Q Consensus       357 -------------------~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~---~--~~~~lt~dh~-------  405 (567)
                                         ....+++|++++.+.+.    ++++||+||||||++|+   |  .+++||+||+       
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~GtTav~~li~~~----~l~vAnvGDSRa~l~r~~~~g~~~~~~LT~DH~~~~~~E~  205 (358)
T 2irm_A          130 QYEISQQFENVLQKLDSLNNALSVGSSAVLALIHRS----HLYLGNIGNCRALLCKTDEHDTLTVTQLSVDHNLLNAEEA  205 (358)
T ss_dssp             ----------CCCTHHHHHTTTTCEEEEEEEEEESS----EEEEEEESSCEEEEEECCTTCSCEEEECSCCCBTTSHHHH
T ss_pred             cccchhhccchhhhcccccCCCCCCCcEEEEEEECC----EEEEEEcccCeEEEEEecCCCceeeEeCCCCCCCCCHHHH
Confidence                               12246677777776666    89999999999999998   8  8999999996       


Q ss_pred             -------------------CCCCCCCCCCC--------------CCccCCCceEE-EEecCCCeEEEEEcCCCC---C--
Q psy12423        406 -------------------LSPPVPPQGSC--------------PLSFPDPHVTE-VMLHENDHFLILANKSVS---E--  446 (567)
Q Consensus       406 -------------------~~r~~g~~~~~--------------~~~~~~p~v~~-~~l~~~d~~lil~sDGl~---~--  446 (567)
                                         ++|++|+..++              ++++++|||.. +.++++|+||||||||||   +  
T Consensus       206 ~Ri~~~Gg~v~~~r~~g~llTRalGd~~~K~~~~~~~~~~~~~~~~v~~~Pdi~~~~~l~~~d~fllL~SDGl~d~l~~~  285 (358)
T 2irm_A          206 ARLFRLGLMAQNFEGVPLYSTRCIGNYLGKAGYKDCNFLSSATAEPVIFEPEIVGGIQITPACRFLVLMSSGLCRALHEI  285 (358)
T ss_dssp             HHHHTTTCCGGGGTTCTTCBSBCEECHHHHTTGGGSSSSTTCSSCSSBCCCEEEEEEECCTTEEEEEEECHHHHHHHHHH
T ss_pred             HHHHHcCCeEeccCcCCEEcccCCcCHHHhccccccccccccCCCCEeccCeEEEEEEeCCCCcEEEEECCCcccCcccc
Confidence                               67889985432              47899999995 999999999999999999   2  


Q ss_pred             -------------------------HHHHHHHHHHHHHH---------------cC--CCCCcEEEEEEeC
Q psy12423        447 -------------------------PVLAAKRIQDLAQS---------------YG--SEDNLSVLVLRFQ  475 (567)
Q Consensus       447 -------------------------~~~~a~~l~~~a~~---------------~g--~~dnit~~vv~~~  475 (567)
                                               ++.+|+.|++.|+.               +|  +.||||||||+|.
T Consensus       286 ~~~~~~~~~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~~~~~~~~~~~~~~~~Gg~~~DNiTvivv~~~  356 (358)
T 2irm_A          286 FPGDASTGNRELVRMISEEFQNQSTLGGVAQSVVHRIVQAHHDTYMQLVEEHRSVTFNSRDDVTLLIRNFN  356 (358)
T ss_dssp             SCSSSSHHHHHHHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCCCCEECCEEEEEEESC
T ss_pred             ccccccccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhhccccccccccCCCCCCCeEEEEEeCC
Confidence                                     34578899999976               57  8999999999985

>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A

Probab=99.91  E-value=3.6e-24  Score=222.01  Aligned_cols=172  Identities=20%  Similarity=0.355  Sum_probs=140.5

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcc------cccCceeEEEEeec-Cc
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLH------RYSLSATLCHLSLH-PV  373 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~------~~~~st~~~~~~~~-~~  373 (567)
                      ..++.++||+++...+......++..+.+.......+.+++..+|..+++.+.....      ...+++|++.+.+. ..
T Consensus       149 ~~l~~VaDG~GG~~~g~~as~~~~~~l~~~~~~~~~~~~~l~~a~~~~n~~i~~~~~~~~~~~~~~~GtT~~~~li~~~~  228 (389)
T 4da1_A          149 VLYFAVYDGHGGPAAADFCHTHMEKCIMDLLPKEKNLETLLTLAFLEIDKAFSSHARLSADATLLTSGTTATVALLRDGI  228 (389)
T ss_dssp             EEEEEEEEEESSTHHHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHHHHHHHSSCGGGGGCEECEEEEEEETTT
T ss_pred             EEEEEEEECCCCHHHHHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCeEEEEEEEcCC
Confidence            468899999999999888888888877665544556688999999999998765432      22345555544443 33


Q ss_pred             cceEEEEEEEecCceEEEEeCCeeeeCCCCCC--------------------------------CCCCCCCCCCCC-Ccc
Q psy12423        374 THRYMLHIASVGEAKAILCRQAGSLTFTHAPT--------------------------------LSPPVPPQGSCP-LSF  420 (567)
Q Consensus       374 ~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~--------------------------------~~r~~g~~~~~~-~~~  420 (567)
                          .+++||+||||+|++|+|+.++||+||+                                ++|++|+..+++ .+.
T Consensus       229 ----~l~vanvGDSRayl~r~g~~~~LT~DHs~~~~~E~~Ri~~~gG~v~~~~~~~~~~~g~l~ltRalGd~~~k~~~v~  304 (389)
T 4da1_A          229 ----ELVVASVGDSRAILCRKGKPMKLTIDHTPERKDEKERIKKCGGFVAWNSLGQPHVNGRLAMTRSIGDLDLKTSGVI  304 (389)
T ss_dssp             ----EEEEEEESSCEEEEEETTEEEECCCCCCTTSHHHHHHHHHHTCCEECC---CCEETTTBSCSBCEECGGGGGGTCB
T ss_pred             ----eEEEEEeeccEEEEEECCEeEEeCCCCCCCCHHHHHHHHHcCCeEecccCCCccCCCeEeeEeeeCChhhccCCCC
Confidence                7899999999999999999999999997                                356777765543 478


Q ss_pred             CCCceEEEEecCC-CeEEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCC
Q psy12423        421 PDPHVTEVMLHEN-DHFLILANKSVS----------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQG  476 (567)
Q Consensus       421 ~~p~v~~~~l~~~-d~~lil~sDGl~----------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~  476 (567)
                      ++|++..+.+.++ |+||||||||||                +|+++|+.|++.|+.+|+.||||||||++..
T Consensus       305 ~~pdi~~~~l~~~~dd~llL~SDGL~d~l~~~ei~~il~~~~~~~~~a~~Lv~~A~~~g~~DNiTvivv~~~~  377 (389)
T 4da1_A          305 AEPETKRIKLHHADDSFLVLTTDGINFMVNSQEICDFVNQCHDPNEAAHAVTEQAIQYGTEDNSTAVVVPFGA  377 (389)
T ss_dssp             CCCEEEEEECCSSSCEEEEEECHHHHTTCCHHHHHHHHHHSSSHHHHHHHHHHHHHHHTCCSCEEEEEEEECC
T ss_pred             CCCceEEEEEcCCCCcEEEEEeCCcccCCCHHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCeEEEEEEecC
Confidence            9999999999964 789999999999                7889999999999999999999999999984

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.91  E-value=3.1e-23  Score=207.21  Aligned_cols=200  Identities=27%  Similarity=0.296  Sum_probs=157.2

Q ss_pred             CCCCccEEEccCCCCCCCCCcccccCcEEEcccCccccee----cCCCCCcEEEcCCCccccccCCCCCCcccEEecccC
Q psy12423        102 NYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYN  177 (567)
Q Consensus       102 ~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n  177 (567)
                      ++++++++++++|.++.++..-.++++.|++++|.+..+.    ..+++|+.|++++|.++.++....+++|++|+|++|
T Consensus         8 ~l~~l~~l~~~~~~l~~ip~~~~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N   87 (290)
T 1p9a_G            8 KVASHLEVNCDKRNLTALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHN   87 (290)
T ss_dssp             CSTTCCEEECTTSCCSSCCSCCCTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSS
T ss_pred             ccCCccEEECCCCCCCcCCCCCCCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCC
Confidence            3444555555555555444333345555555555554443    234556666666666666555545789999999999


Q ss_pred             CCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchh
Q psy12423        178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQL  256 (567)
Q Consensus       178 ~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~  256 (567)
                      .++.+|..+..+++|++|++++|+|+.++...|.. +++|++|+|++|+|+.+|. .+..+++|+.|+|++|+|+.+|+.
T Consensus        88 ~l~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~  166 (290)
T 1p9a_G           88 QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAG  166 (290)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTT
T ss_pred             cCCcCchhhccCCCCCEEECCCCcCcccCHHHHcC-CCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHH
Confidence            99999998999999999999999999999887776 9999999999999999876 468899999999999999999999


Q ss_pred             hhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccCCc
Q psy12423        257 FLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDA  302 (567)
Q Consensus       257 ~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~  302 (567)
                      +|..+++|+.|+|++|+|+.+|..++....|....+..|+|.|.|.
T Consensus       167 ~~~~l~~L~~L~L~~N~l~~ip~~~~~~~~L~~l~L~~Np~~C~c~  212 (290)
T 1p9a_G          167 LLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (290)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             HhcCcCCCCEEECCCCcCCccChhhcccccCCeEEeCCCCccCcCc
Confidence            9999999999999999999999998888888888888888776544

>2pnq_A [pyruvate dehydrogenase [lipoamide]]-phosphatase 1; pyruvate dehydrogenase phosphatase 1, catalytic subunit, PDP1C, hydrolase; 1.81A {Rattus norvegicus} PDB: 3n3c_A 3mq3_A

Probab=99.91  E-value=1.8e-24  Score=228.14  Aligned_cols=171  Identities=20%  Similarity=0.279  Sum_probs=134.4

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhh-------hhh----------------------------------------
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEE-------RTV----------------------------------------  333 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~-------~~l----------------------------------------  333 (567)
                      ..+|++||||+|..++.++...++..+...       ...                                        
T Consensus        66 ~~lfgVfDGHGG~~aa~~as~~L~~~i~~~l~~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~y~~~~~~~~  145 (467)
T 2pnq_A           66 GMLLGVFDGHAGCACSQAVSERLFYYIAVSLLPHETLLEIENAVESGRALLPILQWHKHPNDYFSKEASKLYFNGLRTYW  145 (467)
T ss_dssp             CEEEEEEEEESSSHHHHHHHHHHHHHHHHHHCCHHHHHHHHTTTC----CCCCEEECCCTTCCCCSTTHHHHHHHHHHHH
T ss_pred             cEEEEEECCCCCHHHHHHHHHHHHHHHHHhhcchhhhhhhhhhhhccccccccccccccccccchhhhhhhhhcchhhhh
Confidence            468999999999999999988887766432       000                                        


Q ss_pred             -----------h-hhhhHHHHHHHHHHHHHHhhhcc--------------cccCceeEEEEeecCccceEEEEEEEecCc
Q psy12423        334 -----------K-ETASDYMKYTMLTAHREIKDSLH--------------RYSLSATLCHLSLHPVTHRYMLHIASVGEA  387 (567)
Q Consensus       334 -----------~-~~~~~~l~~a~l~~n~~i~~~~~--------------~~~~st~~~~~~~~~~~~~~~l~~a~~Gds  387 (567)
                                 . ....+++..+|..+++.+.....              ...+++|++++.+.+.    .+++||+|||
T Consensus       146 ~~~~~~~~~~~~~~~~~~aL~~af~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~GtTa~v~li~~~----~l~vAnvGDS  221 (467)
T 2pnq_A          146 QELIDLNTGESADIDVKEALINAFKRLDNDISLEAQVGDPNSFLNYLVLRVAFSGATACVAHVDGV----DLHVANTGDS  221 (467)
T ss_dssp             HHHHHC------CCCHHHHHHHHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHSEECEEEEEEETT----EEEEEEESSC
T ss_pred             hhhccccccccchhhHHHHHHHHHHHHHHHHHHhhhhcccccccccccccCCCCcceEEEEEEECC----EEEEEECCCc
Confidence                       0 14578899999999998865432              2345666666666665    8999999999


Q ss_pred             eEEEEeC---C--eeeeCCCCCC---------------------------------CCCCCCCCCC--------------
Q psy12423        388 KAILCRQ---A--GSLTFTHAPT---------------------------------LSPPVPPQGS--------------  415 (567)
Q Consensus       388 r~~l~r~---~--~~~~lt~dh~---------------------------------~~r~~g~~~~--------------  415 (567)
                      |||++|.   |  .+++||+||+                                 ++|++|+..+              
T Consensus       222 Ra~l~r~~~~g~~~~~~LT~DH~~~~~~E~~Ri~~~g~~~~~~~~~~~~Rv~G~l~vtRAlGd~~~K~~~~~~~~~~~~~  301 (467)
T 2pnq_A          222 RAMLGVQEEDGSWSAVTLSNDHNAQNERELQRLKLEHPKNEAKSVVKQDRLLGLLMPFRAFGDVKFKWSIDLQKRVIESG  301 (467)
T ss_dssp             EEEEEEECTTSCEEEEECCCCCSTTCHHHHHHHHHTSCGGGHHHHBSSSSBTTTBSSSBCEECGGGTSCHHHHHHHHSSS
T ss_pred             eEEEEEecCCCcEEEEECCCCCCCCCHHHHHHHHHcCCCcccceeEecCccccccccchhcCchhhcccchhhhhhhccc
Confidence            9999994   6  6899999998                                 4788888742              


Q ss_pred             -------------------CCCccCCCceEEEEecCCCeEEEEEcCCCC----------------------CH-------
Q psy12423        416 -------------------CPLSFPDPHVTEVMLHENDHFLILANKSVS----------------------EP-------  447 (567)
Q Consensus       416 -------------------~~~~~~~p~v~~~~l~~~d~~lil~sDGl~----------------------~~-------  447 (567)
                                         .|+++++|||..+.++++|+||||||||||                      +|       
T Consensus       302 ~G~~~~~~~~~~~~~~~~~~p~v~~~Pdv~~~~l~~~D~fLVLaSDGLwd~ls~~eiv~iv~~~~~~~~~~~p~~~~~~~  381 (467)
T 2pnq_A          302 PDQLNDNEYTKFIPPNYHTPPYLTAEPEVTYHRLRPQDKFLVLATDGLWETMHRQDVVRIVGEYLTGMHHQQPIAVGGYK  381 (467)
T ss_dssp             CC-----------CTTCSSSCCCBCCCEEEEEECCTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCSSCC--------
T ss_pred             ccccccccccccccccccCCCcccccceEEEEEcCCCCeEEEEEecCccccCChHHHHHHHHHHHhhccccCcccccccC
Confidence                               256899999999999999999999999999                      23       


Q ss_pred             -----------------------HHHHHHHHHHHHHcC-----------------------CCCCcEEEEEEeC
Q psy12423        448 -----------------------VLAAKRIQDLAQSYG-----------------------SEDNLSVLVLRFQ  475 (567)
Q Consensus       448 -----------------------~~~a~~l~~~a~~~g-----------------------~~dnit~~vv~~~  475 (567)
                                             +.+|..|++.|+..|                       ++|||||+||+|.
T Consensus       382 ~~~~~~~~~l~~r~~~~~~~~~~~naA~~Lir~Al~~~~~Ge~~~~~~~~ll~~~~~~~R~~~DdITViVv~~~  455 (467)
T 2pnq_A          382 VTLGQMHGLLTERRAKMSSVFEDQNAATHLIRHAVGNNEFGAVDHERLSKMLSLPEELARMYRDDITIIVVQFN  455 (467)
T ss_dssp             -----------------------CCHHHHHHHHHHC-------------------------CCSCEEEEEEEEC
T ss_pred             ccHHHHHHHHHHhhhcccCCchhhHHHHHHHHHHhcCCCcCcchHHHHHhhhcCCccccccCCCCcEEEEEEeC
Confidence                                   346889999999875                       4899999999996

>2i44_A Serine-threonine phosphatase 2C; PSI-2, 8817Z, structural genomics, protein structure initiative; 2.04A {Toxoplasma gondii}

Probab=99.91  E-value=3.4e-24  Score=217.60  Aligned_cols=171  Identities=13%  Similarity=0.130  Sum_probs=135.4

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhh--------------------hhhhhHHHHHHHHHHHHHHhhhcc---
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTV--------------------KETASDYMKYTMLTAHREIKDSLH---  357 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l--------------------~~~~~~~l~~a~l~~n~~i~~~~~---  357 (567)
                      ..+|.++|||++...+.+....++..+.+...+                    ...+.+++..+|..+++.+.....   
T Consensus        53 ~~l~~V~DGhGG~~~~~~as~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~  132 (324)
T 2i44_A           53 CAFFGVFDGTVGDFASENVKDLVVPQLISSPAWQEVTEMLRSDVPATEVDEKLPQLLDQAVDDMYKNADNELVKMCEQLN  132 (324)
T ss_dssp             EEEEEEEEEESSSHHHHHHHHHHHHHHHTCHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             eEEEEEeCCCCchHHHHHHHHHHHHHHHhhhHHHHHHHHhhccCCccccccccchhHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            568999999999999999888888877653211                    223478899999999998865432   


Q ss_pred             --cccCceeEEEEeecCccceEEEEEEEecCceEEEEeC---C-eeeeCCCCCCC-------------------------
Q psy12423        358 --RYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQ---A-GSLTFTHAPTL-------------------------  406 (567)
Q Consensus       358 --~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~---~-~~~~lt~dh~~-------------------------  406 (567)
                        ..+++++++.  +...    ++++||+||||+|++|+   | ..++||+||+.                         
T Consensus       133 ~~~~g~gtt~~~--i~~~----~l~vanvGDSRa~l~r~~~~g~~~~~LT~DH~~~~~~E~~Ri~~~Gg~v~~~~~~~~~  206 (324)
T 2i44_A          133 KDYASSTSVTAV--LAKG----FVAVGHLGDSRIAMGVETPNGLNCEFLTVDHKPDMPHEKLRIMRNGGSVEYLHNHNNK  206 (324)
T ss_dssp             CSSCEECEEEEE--EETT----EEEEEEESSCEEEEEEEETTEEEEEESCCCCCTTSHHHHHHHHHTTCEEECCTTCTTS
T ss_pred             CCCCCCCeEEEE--EECC----eEEEEEccCceEEEEeccCCCceEEECCCCCCCcCHHHHHHHHHcCCEEEecccccCC
Confidence              2344555543  3444    89999999999999997   6 78999999983                         


Q ss_pred             ----------CCCCCC----CCC----------CCCccCCCceEEEEecCCCeEEEEEcCCCC-----------------
Q psy12423        407 ----------SPPVPP----QGS----------CPLSFPDPHVTEVMLHENDHFLILANKSVS-----------------  445 (567)
Q Consensus       407 ----------~r~~g~----~~~----------~~~~~~~p~v~~~~l~~~d~~lil~sDGl~-----------------  445 (567)
                                +|++|+    ..+          .++++++|||..+++.++|+||||||||||                 
T Consensus       207 ~~~~~g~l~~sra~Gd~p~~~~~~~~~g~~~~~~~~v~~~pdv~~~~l~~~d~~llLaSDGl~d~ls~~ei~~~v~~~~~  286 (324)
T 2i44_A          207 PFIRGGDFSFRKSRGEQPMQLQYSRAFGGKDLKMYGLSNQPDVRVVRVTPQHRVMILATDGLWDVMSAAQAVEIAMQARQ  286 (324)
T ss_dssp             CEEECTTHHHHHHTTCCCCCBSSSBCEECGGGTTTTCBCCCEEEEEECCTTEEEEEEECHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CccccCcccchhhcCCccccceeccccCCccccCCeEeecCEEEEEEcCCCCeEEEEEcCchhccCCHHHHHHHHHHHHh
Confidence                      346677    221          356789999999999999889999999999                 


Q ss_pred             ---CHHH--HHHHHHHHHHHcCCCCCcEEEEEEeCCC
Q psy12423        446 ---EPVL--AAKRIQDLAQSYGSEDNLSVLVLRFQGS  477 (567)
Q Consensus       446 ---~~~~--~a~~l~~~a~~~g~~dnit~~vv~~~~~  477 (567)
                         +++.  +|+.|++.|+.+|+.||||||||++.+.
T Consensus       287 ~~~~~~~~~~a~~L~~~A~~~g~~DNiTvivv~~~~~  323 (324)
T 2i44_A          287 EGRNPAQALVEMTLAEQQSRNQSADNITAMTVFFKKT  323 (324)
T ss_dssp             TTCCHHHHHHHHHHHHHHHTTCCCCCEEEEEEEEC--
T ss_pred             cCCCHHHHHHHHHHHHHHHhcCCCCCCEEEEEEeeCC
Confidence               4677  9999999999999999999999998743

>2j4o_A Mitogen-activated protein kinase kinase kinase 7-interacting protein 1; TGF-beta, pseudo-phosphatase, TAK1 binding protein, protein binding; 2.25A {Homo sapiens} PDB: 2pom_A 2pop_A

Probab=99.91  E-value=2e-24  Score=224.59  Aligned_cols=172  Identities=18%  Similarity=0.238  Sum_probs=137.1

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhh----hhhhhhHHHHHHHHHHHHHHhhhc--------------------
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERT----VKETASDYMKYTMLTAHREIKDSL--------------------  356 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~----l~~~~~~~l~~a~l~~n~~i~~~~--------------------  356 (567)
                      ..+|+++|||++..++.+....++..+.+...    ....+.+++..+|..+++.+....                    
T Consensus        62 ~~lf~V~DGhGG~~aa~~as~~l~~~l~~~~~~~~~~~~~~~~~l~~af~~~~~~i~~~~~~~~~~~~~~~~~~~~g~~~  141 (401)
T 2j4o_A           62 CFLYGVFNGYDGNRVTNFVAQRLSAELLLGQLNAEHAEADVRRVLLQAFDVVERSFLESIDDALAEKASLQSQLPEGVPQ  141 (401)
T ss_dssp             EEEEEEEEEESSSHHHHHHHHHHHHTTSSSSCCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCS
T ss_pred             eEEEEEEcCCCCHHHHHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccccccc
Confidence            56899999999999999999999887754221    123457888889988877654321                    


Q ss_pred             ------------------ccccCceeEEEEeecCccceEEEEEEEecCceEEEEeCC----eeeeCCCCCC---------
Q psy12423        357 ------------------HRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQA----GSLTFTHAPT---------  405 (567)
Q Consensus       357 ------------------~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~----~~~~lt~dh~---------  405 (567)
                                        ....+++|++++.+...    ++++||+||||||++|++    ..++||+||+         
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~GtTa~~~li~~~----~l~vanvGDSRa~l~r~~~~g~~~~~LT~DH~~~~~~E~~R  217 (401)
T 2j4o_A          142 HQLPPQYQKILERLKTLEREISGGAMAVVAVLLNN----KLYVANVGTNRALLCKSTVDGLQVTQLNVDHTTENEDELFR  217 (401)
T ss_dssp             SCSCGGGHHHHHHHHHHHHHHCCEEEEEEEEEETT----EEEEEEESSCEEEEEEECSSSEEEEECSCCCSTTSHHHHHH
T ss_pred             cccccccchhhhhhhcccccCCCccCEEEEEEECC----EEEEEEccCceEEEEEcCCCCceEEECCCCCCCCCHHHHHH
Confidence                              12245666666666665    899999999999999988    8999999997         


Q ss_pred             ---------------------CCCCCCCCCC--------------CCCccCCCceEE-EEecCCCeEEEEEcCCCCC---
Q psy12423        406 ---------------------LSPPVPPQGS--------------CPLSFPDPHVTE-VMLHENDHFLILANKSVSE---  446 (567)
Q Consensus       406 ---------------------~~r~~g~~~~--------------~~~~~~~p~v~~-~~l~~~d~~lil~sDGl~~---  446 (567)
                                           ++|++|+..+              .++++++|||.. +.++++|+||||||||||+   
T Consensus       218 i~~~Gg~v~~~~~~r~~g~l~vtRalGd~~~k~~~~~~~~~~~~~~~~v~~~Pdv~~~~~l~~~d~flvLaSDGlwd~l~  297 (401)
T 2j4o_A          218 LSQLGLDAGKIKQVGIICGQESTRRIGDYKVKYGYTDIDLLSAAKSKPIIAEPEIHGAQPLDGVTGFLVLMSEGLYKALE  297 (401)
T ss_dssp             HHTTTCCHHHHHHHCCBTTBCCSBCEECHHHHHSGGGSTTTTTCSSCSSBCCCEEEEEEECTTCCEEEEEECHHHHHHHH
T ss_pred             HHHcCCCeeeccCccccCCcccccccCCHhhcccccccccccccCCCCeeccceEEEeEEeCCCCcEEEEEccchhhccc
Confidence                                 5688887532              267899999996 9999999999999999992   


Q ss_pred             -------------------------HHHHHHHHHHHHHH-------cCC--------CCCcEEEEEEeCC
Q psy12423        447 -------------------------PVLAAKRIQDLAQS-------YGS--------EDNLSVLVLRFQG  476 (567)
Q Consensus       447 -------------------------~~~~a~~l~~~a~~-------~g~--------~dnit~~vv~~~~  476 (567)
                                               ++.+|+.|++.|+.       +|+        .||||||||+|..
T Consensus       298 ~~~~~~~s~~ei~~~v~~~l~~~~~~~~~a~~Lv~~A~~~~~~a~~~G~~~~~~~~~~DNiTvivv~~~~  367 (401)
T 2j4o_A          298 AAHGPGQANQEIAAMIDTEFAKQTSLDAVAQAVVDRVKRIHSDTFASGGERARFCPRHEDMTLLVRNFGY  367 (401)
T ss_dssp             HHHCTTCHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHSCSSGGGGCSEECCEEEEEEEEBC
T ss_pred             ccccCCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhhhhhhhcCCcccccCCCCCCeEEEEEEcCC
Confidence                                     34578999999875       776        8999999999984

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.91  E-value=2.3e-23  Score=211.99  Aligned_cols=199  Identities=20%  Similarity=0.174  Sum_probs=158.3

Q ss_pred             CCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423         81 KGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL  157 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l  157 (567)
                      .++++.|+|++|.++..+ .+..+++|++|++++|.++.++  ++.+++|++|++++|.+..++....            
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~------------  147 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIA------------  147 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGG------------
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHh------------
Confidence            357888888888887655 4667888888888888887664  5677777777777776654432110            


Q ss_pred             ccccCCCCCCcccEEecccCCCC-CcccccC---------CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423        158 QSLIVSPRPARLQHLDISYNELE-SLPDWID---------TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL  227 (567)
Q Consensus       158 ~~~~~~~~~~~L~~L~Ls~n~l~-~lp~~l~---------~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l  227 (567)
                             .+++|++|++++|++. .+|..+.         .+++|++|+|++|.++.+|..+..  +++|++|+|++|.+
T Consensus       148 -------~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~--l~~L~~L~L~~N~l  218 (328)
T 4fcg_A          148 -------SLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIAN--LQNLKSLKIRNSPL  218 (328)
T ss_dssp             -------GCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGG--CTTCCEEEEESSCC
T ss_pred             -------cCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcC--CCCCCEEEccCCCC
Confidence                   1457777888775443 5665544         499999999999999999987654  99999999999999


Q ss_pred             CCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCccccC
Q psy12423        228 TSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       228 ~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      +++|..+..+++|++|+|++|.+....+..+..+++|+.|+|++|++. .+|..+.++.+|..+++..|.+.+.
T Consensus       219 ~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~  292 (328)
T 4fcg_A          219 SALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSR  292 (328)
T ss_dssp             CCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCC
T ss_pred             CcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhh
Confidence            999999999999999999999888666666789999999999998765 8898888999999999988776654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=3.6e-23  Score=205.06  Aligned_cols=214  Identities=22%  Similarity=0.278  Sum_probs=157.1

Q ss_pred             EEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423          3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG   82 (567)
Q Consensus         3 ~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~   82 (567)
                      .++..+..++++|..+.  ++|++|+|++|.++.++...+                                    ..++
T Consensus        11 ~~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~------------------------------------~~l~   52 (276)
T 2z62_A           11 TYQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSF------------------------------------FSFP   52 (276)
T ss_dssp             EEECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTT------------------------------------TTCT
T ss_pred             eEEecCCCccccCCCCC--CCccEEECCCCcccccCHhHh------------------------------------cccc
Confidence            34556667777776554  467888888887777654332                                    2345


Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL  157 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l  157 (567)
                      +|++|++++|+++...  .+..+++|++|++++|.++.++   +..+++|++|++++|.                    +
T Consensus        53 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--------------------l  112 (276)
T 2z62_A           53 ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN--------------------L  112 (276)
T ss_dssp             TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC--------------------C
T ss_pred             CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECCCCC--------------------c
Confidence            6777777777777554  4667777777777777776653   4444555555555444                    4


Q ss_pred             ccccCCCC--CCcccEEecccCCCCC--cccccCCCcCCcEEECcCCCCCCCChhhhhccCCCcc----EEECCCCCCCC
Q psy12423        158 QSLIVSPR--PARLQHLDISYNELES--LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLH----TLQLSFNRLTS  229 (567)
Q Consensus       158 ~~~~~~~~--~~~L~~L~Ls~n~l~~--lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~----~L~Ls~N~l~~  229 (567)
                      +.+....+  +++|++|++++|.++.  +|..+..+++|++|++++|+++.++...+.. +.+|+    .|++++|.++.
T Consensus       113 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~l~l~L~ls~n~l~~  191 (276)
T 2z62_A          113 ASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRV-LHQMPLLNLSLDLSLNPMNF  191 (276)
T ss_dssp             CCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHH-HHTCTTCCEEEECCSSCCCE
T ss_pred             cccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhh-hhhccccceeeecCCCcccc
Confidence            44443333  6789999999999886  6788899999999999999999887766554 55666    89999999998


Q ss_pred             CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        230 LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       230 lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      ++.......+|+.|+|++|.|+.+|+..|..+++|+.|+|++|+++
T Consensus       192 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~  237 (276)
T 2z62_A          192 IQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD  237 (276)
T ss_dssp             ECTTSSCSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred             cCccccCCCcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence            8776656668999999999999999888888999999999999887

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.90  E-value=2.5e-23  Score=213.91  Aligned_cols=242  Identities=17%  Similarity=0.147  Sum_probs=200.3

Q ss_pred             CCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCcc
Q psy12423         19 DSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI   98 (567)
Q Consensus        19 ~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~   98 (567)
                      ..++.....+++++.++.+|..++                                       ++|++|++++|+++...
T Consensus        28 ~~C~~~~~c~~~~~~l~~iP~~~~---------------------------------------~~L~~L~l~~n~i~~~~   68 (353)
T 2z80_A           28 LSCDRNGICKGSSGSLNSIPSGLT---------------------------------------EAVKSLDLSNNRITYIS   68 (353)
T ss_dssp             CEECTTSEEECCSTTCSSCCTTCC---------------------------------------TTCCEEECTTSCCCEEC
T ss_pred             CCCCCCeEeeCCCCCccccccccc---------------------------------------ccCcEEECCCCcCcccC
Confidence            345667778899999998887552                                       37999999999999765


Q ss_pred             --ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcEEEcCCCccccccC-CCC--C
Q psy12423         99 --ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGNNKLQSLIV-SPR--P  166 (567)
Q Consensus        99 --~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~n~l~~~~~-~~~--~  166 (567)
                        .+..+++|++|++++|.++.+.   +..+++|++|++++|+++.++    ..+++|+.|++++|.++.++. ..+  +
T Consensus        69 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l  148 (353)
T 2z80_A           69 NSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHL  148 (353)
T ss_dssp             TTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTC
T ss_pred             HHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccC
Confidence              5899999999999999999863   778899999999999999876    357899999999999998877 334  8


Q ss_pred             CcccEEecccC-CCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEE
Q psy12423        167 ARLQHLDISYN-ELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYL  243 (567)
Q Consensus       167 ~~L~~L~Ls~n-~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L  243 (567)
                      ++|++|++++| .++.++ ..+..+++|++|++++|.++.+++..+.. +++|++|++++|.++.+|.. +..+++|+.|
T Consensus       149 ~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~-l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L  227 (353)
T 2z80_A          149 TKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKS-IQNVSHLILHMKQHILLLEIFVDVTSSVECL  227 (353)
T ss_dssp             TTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT-CSEEEEEEEECSCSTTHHHHHHHHTTTEEEE
T ss_pred             CCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhc-cccCCeecCCCCccccchhhhhhhcccccEE
Confidence            99999999999 577774 57899999999999999999776555554 89999999999999988875 4568999999


Q ss_pred             EccCCCCCCCchhhh---cCCCCCcEEEccCCcCC-----CCCCCCcCCccceeecccCCccccC
Q psy12423        244 FLQSNSINILPQLFL---QNSSKLKVLNISKNCLK-----MLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       244 ~Ls~N~l~~l~~~~l---~~l~~L~~L~Ls~N~l~-----~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      ++++|.++.++...+   .....++.+++++|.++     .+|+.+..+++|..+++..|.+...
T Consensus       228 ~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i  292 (353)
T 2z80_A          228 ELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV  292 (353)
T ss_dssp             EEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred             ECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence            999999998765432   34677889999999887     5777667777888888887777654

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.90  E-value=2.7e-24  Score=230.65  Aligned_cols=226  Identities=17%  Similarity=0.239  Sum_probs=194.4

Q ss_pred             CcEEEccCCCCCcCC-ccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFP-GNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp-~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|.|+.++ ..|..+++|++|+|++|.|+++++ +                                     .
T Consensus        36 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l-------------------------------------~   77 (487)
T 3oja_A           36 VKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-L-------------------------------------E   77 (487)
T ss_dssp             CCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-C-------------------------------------T
T ss_pred             ccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-c-------------------------------------c
Confidence            689999999999886 589999999999999999986543 1                                     2


Q ss_pred             CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCccccee----cCCCCCcEEEcCCC
Q psy12423         80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGNN  155 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~n  155 (567)
                      .+++|++|+|++|.+++..   ..++|+.|++++|.++.++...+++|+.|++++|.++.+.    ..+++|+.|++++|
T Consensus        78 ~l~~L~~L~Ls~N~l~~l~---~~~~L~~L~L~~N~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  154 (487)
T 3oja_A           78 SLSTLRTLDLNNNYVQELL---VGPSIETLHAANNNISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN  154 (487)
T ss_dssp             TCTTCCEEECCSSEEEEEE---ECTTCCEEECCSSCCCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS
T ss_pred             cCCCCCEEEecCCcCCCCC---CCCCcCEEECcCCcCCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC
Confidence            3568999999999887654   3388999999999999988778899999999999998774    34689999999999


Q ss_pred             ccccccCCCC---CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423        156 KLQSLIVSPR---PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS  232 (567)
Q Consensus       156 ~l~~~~~~~~---~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~  232 (567)
                      .+++..+..+   +++|++|+|++|.++.+|. +..+++|+.|+|++|.|+.+|+.+..  +++|+.|+|++|.|+.+|.
T Consensus       155 ~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~Ls~N~l~~~~~~~~~--l~~L~~L~Ls~N~l~~lp~  231 (487)
T 3oja_A          155 EIDTVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLDLSSNKLAFMGPEFQS--AAGVTWISLRNNKLVLIEK  231 (487)
T ss_dssp             CCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEECCSSCCCEECGGGGG--GTTCSEEECTTSCCCEECT
T ss_pred             CCCCcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEECCCCCCCCCCHhHcC--CCCccEEEecCCcCcccch
Confidence            9998776655   6899999999999998865 34689999999999999999888543  8999999999999999999


Q ss_pred             hhhCCCCCcEEEccCCCCC-CCchhhhcCCCCCcEEEcc
Q psy12423        233 LIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNIS  270 (567)
Q Consensus       233 ~~~~l~~L~~L~Ls~N~l~-~l~~~~l~~l~~L~~L~Ls  270 (567)
                      .+..+++|+.|++++|.+. ..++.++..++.|+.|+++
T Consensus       232 ~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          232 ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             TCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             hhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            9999999999999999998 4444556788888888886

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.90  E-value=1e-22  Score=202.87  Aligned_cols=199  Identities=24%  Similarity=0.321  Sum_probs=158.1

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCc-
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK-  156 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~-  156 (567)
                      +|++|++++|.++...  .+..+++|++|++++|.++.+.   +..+++|++|++                    ++|. 
T Consensus        33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--------------------~~n~~   92 (285)
T 1ozn_A           33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDL--------------------SDNAQ   92 (285)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC--------------------CSCTT
T ss_pred             CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeC--------------------CCCCC
Confidence            5667777777766544  3666667777777777666542   444445555544                    4454 


Q ss_pred             cccccCCCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-
Q psy12423        157 LQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-  232 (567)
Q Consensus       157 l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-  232 (567)
                      ++.+.+..+  +++|++|++++|.++.+ |..+..+++|++|++++|.++.++...+.. +++|++|+|++|.++.+|. 
T Consensus        93 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~  171 (285)
T 1ozn_A           93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPER  171 (285)
T ss_dssp             CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEECTT
T ss_pred             ccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhcc-CCCccEEECCCCcccccCHH
Confidence            444444444  78999999999999977 567899999999999999999999887765 9999999999999999876 


Q ss_pred             hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccCCc
Q psy12423        233 LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSDA  302 (567)
Q Consensus       233 ~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~~  302 (567)
                      .+..+++|++|+|++|.++.+++..+..+++|+.|++++|+++.+|.. +..+..|..+++..|.+.+.+.
T Consensus       172 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             HhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            588999999999999999999887889999999999999999999865 5578888888888888876544

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.90  E-value=1.4e-24  Score=219.46  Aligned_cols=240  Identities=19%  Similarity=0.136  Sum_probs=119.2

Q ss_pred             CCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCC-------CCCCCccEEEec
Q psy12423         18 QDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREP-------EVKGELTSVNLR   90 (567)
Q Consensus        18 ~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~-------~~l~~L~~L~Ls   90 (567)
                      ++..++|+.|++++|.+ .+|..++..++.|...             .+....... +...       ..+++|++|+|+
T Consensus        39 ~~~~~~L~~l~l~~n~l-~~p~~~~~~L~~L~L~-------------~n~l~~~~~-~~~~~~~~~~~~~l~~L~~L~L~  103 (312)
T 1wwl_A           39 YGGGRSLEYLLKRVDTE-ADLGQFTDIIKSLSLK-------------RLTVRAARI-PSRILFGALRVLGISGLQELTLE  103 (312)
T ss_dssp             EEEEEECTTHHHHCCTT-CCCHHHHHHHHHCCCC-------------EEEEEEEEC-BHHHHHHHHHHHTTSCCCEEEEE
T ss_pred             EccCCCceeEeeccccc-ccHHHHHHHHhhcccc-------------cccccCCCc-CHHHHHHHHHhcCcCCccEEEcc
Confidence            45667899999999999 8888776543333211             111110000 0000       135677777777


Q ss_pred             CCCCCCcc--cc--CCCCCccEEEccCCCCCCCC--Cccc-----ccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423         91 SNQLKGTI--IL--GNYGNLTTLDVSENSIESLD--LGAL-----NRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS  159 (567)
Q Consensus        91 ~n~l~~~~--~l--~~l~~L~~L~L~~n~l~~~~--~~~l-----~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~  159 (567)
                      +|.+++..  .+  ..+++|++|++++|.++.++  +..+     ++|++|++++|++..++                  
T Consensus       104 ~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~------------------  165 (312)
T 1wwl_A          104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS------------------  165 (312)
T ss_dssp             EEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC------------------
T ss_pred             CCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch------------------
Confidence            77776533  22  66677777777777776652  2233     55666666666555443                  


Q ss_pred             ccCCCC--CCcccEEecccCCCCC---ccccc--CCCcCCcEEECcCCCCCCC---ChhhhhccCCCccEEECCCCCCCC
Q psy12423        160 LIVSPR--PARLQHLDISYNELES---LPDWI--DTCPELETIFASHNRITQL---PSQFFCRELGKLHTLQLSFNRLTS  229 (567)
Q Consensus       160 ~~~~~~--~~~L~~L~Ls~n~l~~---lp~~l--~~l~~L~~L~Ls~N~l~~l---~~~~~~~~l~~L~~L~Ls~N~l~~  229 (567)
                        +..+  +++|++|+|++|.+..   +|..+  ..+++|++|+|++|.++.+   +..++.. +++|++|+|++|.+++
T Consensus       166 --~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~-l~~L~~L~Ls~N~l~~  242 (312)
T 1wwl_A          166 --CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAA-RVQLQGLDLSHNSLRD  242 (312)
T ss_dssp             --TTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHT-TCCCSEEECTTSCCCS
T ss_pred             --HHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhc-CCCCCEEECCCCcCCc
Confidence              3222  4445555555554431   12222  4445555555555555422   2222222 4455555555555544


Q ss_pred             Cc--hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCcc
Q psy12423        230 LP--SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGF  297 (567)
Q Consensus       230 lp--~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~  297 (567)
                      .+  ..+..+++|++|+|++|.|+.+|..++   ++|+.|+|++|+|+.+|. +..+++|..+++..|.+
T Consensus       243 ~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p~-~~~l~~L~~L~L~~N~l  308 (312)
T 1wwl_A          243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNPS-PDELPQVGNLSLKGNPF  308 (312)
T ss_dssp             SCCCSCCCCCTTCCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred             ccchhhhhhcCCCCEEECCCCccChhhhhcc---CCceEEECCCCCCCCChh-HhhCCCCCEEeccCCCC
Confidence            22  223334455555555555554444332   445555555555554443 34444444444444443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.89  E-value=6.3e-22  Score=195.56  Aligned_cols=193  Identities=24%  Similarity=0.387  Sum_probs=139.6

Q ss_pred             CCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCcc--cc
Q psy12423         23 RLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI--IL  100 (567)
Q Consensus        23 ~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l  100 (567)
                      +++.++++++.++.+|..++                                       ++|++|+|++|+++...  .+
T Consensus        17 ~~~~l~~~~~~l~~ip~~~~---------------------------------------~~l~~L~l~~n~l~~~~~~~~   57 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPSNIP---------------------------------------ADTKKLDLQSNKLSSLPSKAF   57 (270)
T ss_dssp             TTTEEECTTSCCSSCCSCCC---------------------------------------TTCSEEECCSSCCSCCCTTSS
T ss_pred             CCCEEEccCCCCCccCCCCC---------------------------------------CCCCEEECcCCCCCeeCHHHh
Confidence            56778888888887775442                                       26777888888877655  47


Q ss_pred             CCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCC--CCcccEEecc
Q psy12423        101 GNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDIS  175 (567)
Q Consensus       101 ~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls  175 (567)
                      ..+++|++|++++|.++.++   +..+++|++|++++|.+..+                    ++..+  +++|++|+++
T Consensus        58 ~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~--------------------~~~~~~~l~~L~~L~l~  117 (270)
T 2o6q_A           58 HRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL--------------------PIGVFDQLVNLAELRLD  117 (270)
T ss_dssp             SSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCC--------------------CTTTTTTCSSCCEEECC
T ss_pred             cCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcC--------------------CHhHcccccCCCEEECC
Confidence            77888888888888877664   34455555555555544332                    22222  4677778888


Q ss_pred             cCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCC
Q psy12423        176 YNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINIL  253 (567)
Q Consensus       176 ~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l  253 (567)
                      +|.++.++. .|..+++|++|+|++|.++.++...+.. +++|++|+|++|.++.++. .+..+++|++|+|++|.|+.+
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  196 (270)
T 2o6q_A          118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK-LTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRV  196 (270)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccC-CcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcC
Confidence            887776653 5677888888888888888887776655 7888888888888887765 467788888888888888888


Q ss_pred             chhhhcCCCCCcEEEccCCcCC
Q psy12423        254 PQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       254 ~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      |+..|..+++|+.|+|++|++.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          197 PEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBC
T ss_pred             CHHHhccccCCCEEEecCCCee
Confidence            8877777888888888888775

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.89  E-value=2.7e-24  Score=217.32  Aligned_cols=214  Identities=17%  Similarity=0.127  Sum_probs=160.2

Q ss_pred             CCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC----Cc-------ccccCcEEEcccCccccee------c
Q psy12423         81 KGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD----LG-------ALNRLESIKCSRNQLKTLV------L  142 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~----~~-------~l~~L~~L~ls~n~l~~l~------~  142 (567)
                      .++|+.|++++|.+ ..+ .+..  .|+.|++++|.+....    +.       .+++|++|++++|.+++..      .
T Consensus        42 ~~~L~~l~l~~n~l-~~p~~~~~--~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  118 (312)
T 1wwl_A           42 GRSLEYLLKRVDTE-ADLGQFTD--IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEA  118 (312)
T ss_dssp             EEECTTHHHHCCTT-CCCHHHHH--HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSC
T ss_pred             CCCceeEeeccccc-ccHHHHHH--HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHh
Confidence            34667777777777 322 2222  2777777777775432    11       4677888888888776422      3


Q ss_pred             CCCCCcEEEcCCCccccccCCCC--C-----CcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCC---CChhh-h
Q psy12423        143 NGSSLISVIAGNNKLQSLIVSPR--P-----ARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQ---LPSQF-F  210 (567)
Q Consensus       143 ~~~~L~~L~l~~n~l~~~~~~~~--~-----~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~---l~~~~-~  210 (567)
                      .+++|+.|++++|.+++. +..+  +     ++|++|+|++|.++.++ ..+..+++|++|++++|++..   ++..+ +
T Consensus       119 ~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~  197 (312)
T 1wwl_A          119 TGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCP  197 (312)
T ss_dssp             CSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCT
T ss_pred             cCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHh
Confidence            457788888888888777 3322  2     89999999999999886 689999999999999999763   23333 2


Q ss_pred             hccCCCccEEECCCCCCCCCch----hhhCCCCCcEEEccCCCCCCCc-hhhhcCCCCCcEEEccCCcCCCCCCCCcCCc
Q psy12423        211 CRELGKLHTLQLSFNRLTSLPS----LIRQIASLKYLFLQSNSINILP-QLFLQNSSKLKVLNISKNCLKMLPSLQKGFY  285 (567)
Q Consensus       211 ~~~l~~L~~L~Ls~N~l~~lp~----~~~~l~~L~~L~Ls~N~l~~l~-~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~  285 (567)
                      .. +++|++|+|++|.|+.++.    .+..+++|++|+|++|.|+..+ ...+..+++|+.|+|++|+|+.+|..+.  .
T Consensus       198 ~~-l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~~ip~~~~--~  274 (312)
T 1wwl_A          198 LK-FPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP--A  274 (312)
T ss_dssp             TS-CTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCSSCCSSCC--S
T ss_pred             cc-CCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccChhhhhcc--C
Confidence            33 8999999999999996543    3467899999999999999866 3456678999999999999999998776  6


Q ss_pred             cceeecccCCccccCC
Q psy12423        286 LLNISQLRLPGFCNSD  301 (567)
Q Consensus       286 ~L~~~~l~~~~~~~~~  301 (567)
                      +|..+++..|.+.+.+
T Consensus       275 ~L~~L~Ls~N~l~~~p  290 (312)
T 1wwl_A          275 KLSVLDLSYNRLDRNP  290 (312)
T ss_dssp             EEEEEECCSSCCCSCC
T ss_pred             CceEEECCCCCCCCCh
Confidence            7778888777776553

>2pk0_A Serine/threonine protein phosphatase STP1; SI motif, signaling protein; 2.65A {Streptococcus agalactiae}

Probab=99.88  E-value=4.4e-22  Score=194.43  Aligned_cols=168  Identities=16%  Similarity=0.201  Sum_probs=132.7

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhh-hh--h--hhhhhHHHHHHHHHHHHHHhhhccc---ccCceeEEEEeecC
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEE-RT--V--KETASDYMKYTMLTAHREIKDSLHR---YSLSATLCHLSLHP  372 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~-~~--l--~~~~~~~l~~a~l~~n~~i~~~~~~---~~~st~~~~~~~~~  372 (567)
                      ..++.++||+++...+......+...+.++ ..  .  ...+.+++..++..+++.+......   .++++|++.+.+.+
T Consensus        34 ~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~gtT~~~~~i~~  113 (250)
T 2pk0_A           34 VPLIILADGMGGHRAGNIASEMTVTDLGSDWAETDFSELSEIRDWMLVSIETENRKIYELGQSDDYKGMGTTIEAVAIVG  113 (250)
T ss_dssp             CEEEEEEEEECTTTHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEECEEEEEEET
T ss_pred             cEEEEEEeCCCCcHHHHHHHHHHHHHHHHHHhhcccCChhhHHHHHHHHHHHHHHHHHHHHhhCCCCCCcceEEEEEEEC
Confidence            468899999998877666666666655422 11  1  3345778999999999987665432   34556666666665


Q ss_pred             ccceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEEE
Q psy12423        373 VTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTEV  428 (567)
Q Consensus       373 ~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~~  428 (567)
                      .    ++++||+||||+|++|+|+..+||.||+                        ++|++|+..     .++|++..+
T Consensus       114 ~----~l~~anvGDsr~~l~r~g~~~~lt~dh~~~~~~~~~g~i~~~~~~~~~~~~~ltralG~~~-----~~~p~~~~~  184 (250)
T 2pk0_A          114 D----NIIFAHVGDSRIGIVRQGEYHLLTSDHSLVNELVKAGQLTEEEAASHPQKNIITQSIGQAN-----PVEPDLGVH  184 (250)
T ss_dssp             T----EEEEEEESSCEEEEEETTEEEECCCCCBHHHHHHHTTSSCHHHHHTCCSCCCBSCCBSCSS-----CCCCEEEEE
T ss_pred             C----eEEEEEeCCCeEEEEcCCcEEEeCCCCCHHHHHHHcCCCCHHHHHhCCCcceEEeecCCCC-----CccceEEEE
Confidence            5    8999999999999999999999999997                        377888654     568999999


Q ss_pred             EecCCCeEEEEEcCCCC----------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeCCCC
Q psy12423        429 MLHENDHFLILANKSVS----------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQGSE  478 (567)
Q Consensus       429 ~l~~~d~~lil~sDGl~----------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~~~~  478 (567)
                      ++.++| +|||||||||                +++.+|+.|++.|..+|+.|||||+||++.+++
T Consensus       185 ~l~~gd-~lll~SDGl~d~l~~~~i~~~~~~~~~~~~~a~~L~~~a~~~g~~DniTvivv~~~~~~  249 (250)
T 2pk0_A          185 LLEEGD-YLVVNSDGLTNMLSNADIATVLTQEKTLDDKNQDLITLANHRGGLDNITVALVYVESEA  249 (250)
T ss_dssp             ECCTTC-EEEEECHHHHTTSCHHHHHHHHTSSSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECC--
T ss_pred             EcCCCC-EEEEECCCCCCCcCHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCCCeEEEEEEeeCCc
Confidence            999875 6889999999                688899999999999999999999999998543

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=9.3e-22  Score=196.47  Aligned_cols=198  Identities=28%  Similarity=0.369  Sum_probs=155.1

Q ss_pred             cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCC
Q psy12423         17 NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKG   96 (567)
Q Consensus        17 ~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~   96 (567)
                      .+.++++|+++++++|.++.+|..++                                       ++++.|+|++|.++.
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~ip~~~~---------------------------------------~~l~~L~L~~N~l~~   45 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTALPPDLP---------------------------------------KDTTILHLSENLLYT   45 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSSCCSCCC---------------------------------------TTCCEEECTTSCCSE
T ss_pred             cccccCCccEEECCCCCCCcCCCCCC---------------------------------------CCCCEEEcCCCcCCc
Confidence            36678888888888888888886552                                       267888888888876


Q ss_pred             cc--ccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCC-CCcccEE
Q psy12423         97 TI--ILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR-PARLQHL  172 (567)
Q Consensus        97 ~~--~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~-~~~L~~L  172 (567)
                      ..  .+..+++|++|++++|.++.++ ...+++|++|++++|++..++                    .... +++|++|
T Consensus        46 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~l~--------------------~~~~~l~~L~~L  105 (290)
T 1p9a_G           46 FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP--------------------LLGQTLPALTVL  105 (290)
T ss_dssp             EEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCC--------------------CCTTTCTTCCEE
T ss_pred             cCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCcCc--------------------hhhccCCCCCEE
Confidence            54  5778888888888888887753 355566666666666554332                    2111 5688889


Q ss_pred             ecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccCCCC
Q psy12423        173 DISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSI  250 (567)
Q Consensus       173 ~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l  250 (567)
                      +|++|+++.+| ..|..+++|++|+|++|+|+.++...|.. +++|+.|+|++|+|+.+|.. +..+++|++|+|++|+|
T Consensus       106 ~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          106 DVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP-TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             ECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhccc-ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence            99999888886 57888899999999999999888887765 88999999999999988764 57789999999999999


Q ss_pred             CCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        251 NILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       251 ~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      +.+|..++ .+++|+.|+|++|++.
T Consensus       185 ~~ip~~~~-~~~~L~~l~L~~Np~~  208 (290)
T 1p9a_G          185 YTIPKGFF-GSHLLPFAFLHGNPWL  208 (290)
T ss_dssp             CCCCTTTT-TTCCCSEEECCSCCBC
T ss_pred             CccChhhc-ccccCCeEEeCCCCcc
Confidence            99988875 5678999999999886

>1txo_A Putative bacterial enzyme; serine/threonine protein phosphatases, PSTP/PPP, structural genomics, PSI, protein structure initiative; 1.95A {Mycobacterium tuberculosis} SCOP: d.219.1.1 PDB: 2cm1_A

Probab=99.88  E-value=7.5e-22  Score=191.17  Aligned_cols=164  Identities=17%  Similarity=0.204  Sum_probs=131.5

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhh--hhhhhhHHHHHHHHHHHHHHhhhcc----cccCceeEEEEeecCcc
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERT--VKETASDYMKYTMLTAHREIKDSLH----RYSLSATLCHLSLHPVT  374 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~--l~~~~~~~l~~a~l~~n~~i~~~~~----~~~~st~~~~~~~~~~~  374 (567)
                      ..++.++||+++...+......+...+.+...  ....+.+++..++..++..+.....    ..++++|++.+...+. 
T Consensus        28 ~~~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~l~~a~~~~~~~i~~~~~~~~~~~~~gtT~~~~~i~~~-  106 (237)
T 1txo_A           28 ARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAGNSAIAAQVEMEPDLEGMGTTLTAILFAGN-  106 (237)
T ss_dssp             SSEEEEEEEECTTTHHHHHHHHHHHHHGGGGSSCCCSCHHHHHHHHHHHHHHHHHHHHHHCGGGTTCEECEEEEEEETT-
T ss_pred             CCEEEEEeCCCCcHHHHHHHHHHHHHHHHHhhhCCchhHHHHHHHHHHHHHHHHHHHHhhCCCCCCCcceEEEEEEECC-
Confidence            56899999999988888888877777655332  1234578899999999887765432    2345666666666665 


Q ss_pred             ceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEEEEe
Q psy12423        375 HRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTEVML  430 (567)
Q Consensus       375 ~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~~~l  430 (567)
                         ++++||+||||+|++|+|+..+||+||+                        ++|++|+      ..++|++..+++
T Consensus       107 ---~l~~a~vGDsr~~l~r~g~~~~lt~dh~~~~~~~~~G~i~~~~~~~~~~~~~~tr~lg~------~~~~p~~~~~~l  177 (237)
T 1txo_A          107 ---RLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEAHSHPQRSLIMRALTG------HEVEPTLTMREA  177 (237)
T ss_dssp             ---EEEEEEESSCEEEEEETTEEEECSCCCBHHHHHHHTTSSCTTGGGGCTTTTCBCCCBSS------SCCCCEEEEEEC
T ss_pred             ---EEEEEEEccCcEEEEeCCEeEEeCCCCCHHHHHHHcCCCCHHHHhhCccccceeeccCC------CCccceEEEEec
Confidence               8999999999999999999999999998                        2444443      357899999999


Q ss_pred             cCCCeEEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423        431 HENDHFLILANKSVS---------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ  475 (567)
Q Consensus       431 ~~~d~~lil~sDGl~---------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~  475 (567)
                      .++|. +||||||||               +|+.+|+.|++.|+.+|+.|||||+||++.
T Consensus       178 ~~~d~-lvl~SDGl~d~l~~~~i~~~~~~~~~~~~a~~L~~~a~~~g~~DniTvivv~~~  236 (237)
T 1txo_A          178 RAGDR-YLLCSDGLSDPVSDETILEALQIPEVAESAHRLIELALRGGGPDNVTVVVADLE  236 (237)
T ss_dssp             CTTCE-EEEECHHHHTTSCHHHHHHHHTSSSHHHHHHHHHHHHHHTTCCSCEEEEEEEEE
T ss_pred             CCCCE-EEEECCCCCCCCCHHHHHHHHhcCCHHHHHHHHHHHHHHcCCCCCeEEEEEEee
Confidence            99865 579999999               688999999999999999999999999874

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.87  E-value=1.1e-21  Score=197.79  Aligned_cols=194  Identities=18%  Similarity=0.291  Sum_probs=170.5

Q ss_pred             CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee--cCCCCCcEEEcCCCc
Q psy12423         80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNK  156 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~  156 (567)
                      .+++|++|++++|.++....+..+++|++|++++|.++.++ +..+++|++|++++|.++.++  ..+++|+.|++++|.
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~  118 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQ  118 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSC
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhhcCCCCCCEEECCCCC
Confidence            46689999999999988778888999999999999998875 888999999999999998875  457899999999999


Q ss_pred             cccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhC
Q psy12423        157 LQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ  236 (567)
Q Consensus       157 l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  236 (567)
                      ++.++....+++|++|++++|.++.++. +..+++|+.|++++|.++.++.  +.. +++|+.|+|++|.++.++. +..
T Consensus       119 l~~~~~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~~n~l~~~~~-l~~  193 (308)
T 1h6u_A          119 ITDVTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LAN-LSKLTTLKADDNKISDISP-LAS  193 (308)
T ss_dssp             CCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCCCGG-GGG
T ss_pred             CCCchhhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCCChh--hcC-CCCCCEEECCCCccCcChh-hcC
Confidence            9988764448899999999999998876 8889999999999999998877  333 8999999999999999876 788


Q ss_pred             CCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423        237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL  280 (567)
Q Consensus       237 l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~  280 (567)
                      +++|++|+|++|.++.+++  +..+++|+.|++++|+++.+|..
T Consensus       194 l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~~~~  235 (308)
T 1h6u_A          194 LPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVF  235 (308)
T ss_dssp             CTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECCCEE
T ss_pred             CCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecCCee
Confidence            9999999999999998885  67899999999999999988754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.87  E-value=6.1e-21  Score=188.49  Aligned_cols=197  Identities=28%  Similarity=0.348  Sum_probs=157.0

Q ss_pred             CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423         83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS  159 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~  159 (567)
                      .++.++++++.++..+. .-.++|+.|++++|.++.++   +..+++|++|++                    ++|.++.
T Consensus        17 ~~~~l~~~~~~l~~ip~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l--------------------~~n~l~~   75 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAIPS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYL--------------------NDNKLQT   75 (270)
T ss_dssp             TTTEEECTTSCCSSCCS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEEC--------------------CSSCCSC
T ss_pred             CCCEEEccCCCCCccCC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEEC--------------------CCCccCe
Confidence            46677777777765441 11256777777777776654   344445555555                    4555555


Q ss_pred             ccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hh
Q psy12423        160 LIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IR  235 (567)
Q Consensus       160 ~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~  235 (567)
                      ++...+  +++|++|++++|.++.+|. .+..+++|++|++++|.++.++...+.. +++|++|+|++|.++.+|.. +.
T Consensus        76 i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~l~~~~~~~~~  154 (270)
T 2o6q_A           76 LPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS-LTKLTYLSLGYNELQSLPKGVFD  154 (270)
T ss_dssp             CCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTT
T ss_pred             eChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCc-CcCCCEEECCCCcCCccCHhHcc
Confidence            544443  6899999999999998874 6789999999999999999999888766 99999999999999998864 78


Q ss_pred             CCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccCC
Q psy12423        236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNSD  301 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~~  301 (567)
                      .+++|++|+|++|.|+.+++..|..+++|+.|+|++|+|+.+|... ..+.+|..+++..|.+.+.+
T Consensus       155 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          155 KLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            9999999999999999999988899999999999999999999864 46788999999888886554

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.87  E-value=6e-22  Score=200.13  Aligned_cols=215  Identities=19%  Similarity=0.258  Sum_probs=186.7

Q ss_pred             CCccEEEecCCCCCC--cc--ccCCCCCccEEEccC-CCCCC-C--CCcccccCcEEEcccCccccee----cCCCCCcE
Q psy12423         82 GELTSVNLRSNQLKG--TI--ILGNYGNLTTLDVSE-NSIES-L--DLGALNRLESIKCSRNQLKTLV----LNGSSLIS  149 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~--~~--~l~~l~~L~~L~L~~-n~l~~-~--~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~  149 (567)
                      .+++.|+|++|.+.+  ..  .+..+++|++|++++ |.+.. +  .+..+++|++|++++|.+....    ..+++|++
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~  129 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCE
Confidence            589999999999997  33  788999999999995 88875 3  3788999999999999998443    45789999


Q ss_pred             EEcCCCccccccCCCC--CCcccEEecccCCCC-CcccccCCCc-CCcEEECcCCCCC-CCChhhhhccCCCccEEECCC
Q psy12423        150 VIAGNNKLQSLIVSPR--PARLQHLDISYNELE-SLPDWIDTCP-ELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSF  224 (567)
Q Consensus       150 L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~-~lp~~l~~l~-~L~~L~Ls~N~l~-~l~~~~~~~~l~~L~~L~Ls~  224 (567)
                      |++++|.+++..+..+  +++|++|++++|.++ .+|..+..++ +|++|++++|.++ .+|..+..  +. |+.|+|++
T Consensus       130 L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--l~-L~~L~Ls~  206 (313)
T 1ogq_A          130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFAN--LN-LAFVDLSR  206 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGG--CC-CSEEECCS
T ss_pred             EeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhC--Cc-ccEEECcC
Confidence            9999999997666655  899999999999999 8899999998 9999999999999 56665543  55 99999999


Q ss_pred             CCCCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCccccC
Q psy12423        225 NRLTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       225 N~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      |.+++ +|..+..+++|+.|+|++|.++..++. +..+++|++|+|++|+|+ .+|..+..+.+|..+++..|.+.+.
T Consensus       207 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~  283 (313)
T 1ogq_A          207 NMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             SEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             CcccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccccc
Confidence            99985 667889999999999999999977766 578999999999999999 8888888899999999988887643

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=8.8e-22  Score=190.82  Aligned_cols=97  Identities=23%  Similarity=0.217  Sum_probs=48.9

Q ss_pred             EEecccC-CCCCccc-ccCCCcCCc-EEECcCCCCCCCChhhhhccCCCccEEECCCCC-CCCCch-hhhCC-CCCcEEE
Q psy12423        171 HLDISYN-ELESLPD-WIDTCPELE-TIFASHNRITQLPSQFFCRELGKLHTLQLSFNR-LTSLPS-LIRQI-ASLKYLF  244 (567)
Q Consensus       171 ~L~Ls~n-~l~~lp~-~l~~l~~L~-~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~lp~-~~~~l-~~L~~L~  244 (567)
                      +|++++| .++.+|. .|..+++|+ .|++++|.++.+|...|.  .++|+.|+|++|. ++.+|. .+..+ ++|+.|+
T Consensus       134 ~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~--~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~  211 (239)
T 2xwt_C          134 ILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFN--GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLD  211 (239)
T ss_dssp             EEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTT--TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEE
T ss_pred             EEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcC--CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEE
Confidence            5555555 5555443 355555555 555555555555554443  2455555555552 554432 34444 5555555


Q ss_pred             ccCCCCCCCchhhhcCCCCCcEEEccCC
Q psy12423        245 LQSNSINILPQLFLQNSSKLKVLNISKN  272 (567)
Q Consensus       245 Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N  272 (567)
                      +++|.|+.+|..   .+++|+.|+++++
T Consensus       212 l~~N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          212 VSQTSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CCCCccccCChh---HhccCceeeccCc
Confidence            555555555543   3444555555443

>2j82_A TPPHA, protein serine-threonine phosphatase; PP2C family phosphatase, hydrolase; 1.28A {Synechococcus elongatus} PDB: 2j86_A 2y09_A 2xzv_A

Probab=99.86  E-value=5.6e-21  Score=185.37  Aligned_cols=162  Identities=17%  Similarity=0.202  Sum_probs=123.6

Q ss_pred             ceeeccCCCCchhhhHHhhhhHHHHHhhhh--h---hhhhhHHHHHHHHHHHHHHhhhccc----ccCceeEEEEeec--
Q psy12423        303 LIGIFDSGDNGDIASTLVQSIPRILLEERT--V---KETASDYMKYTMLTAHREIKDSLHR----YSLSATLCHLSLH--  371 (567)
Q Consensus       303 ~~~~~dg~~~~~is~~l~~~lP~~l~~~~~--l---~~~~~~~l~~a~l~~n~~i~~~~~~----~~~st~~~~~~~~--  371 (567)
                      ++.++||+++...+......+...+.+...  .   ...+.+++..++..+++.+......    .++++|++.+.+.  
T Consensus        29 ~~~V~DG~Gg~~~~~~as~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtT~~~~~i~~~  108 (240)
T 2j82_A           29 FFIVADGMGGHAGGEEASRLAVDHIRQYLETHLEDLQHDPVTLLRQAFLAANHAIVEQQRQNSARADMGTTAVVILLDEK  108 (240)
T ss_dssp             EEEEEEBC---CHHHHHHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHTTSCSCTTCCBCEEEEEECTT
T ss_pred             EEEEEcCCCCchHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHhhcccCCCCCCceEEEEEEEec
Confidence            899999998875555444444443332211  1   3356788999999999988765432    2345666666666  


Q ss_pred             CccceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEE
Q psy12423        372 PVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTE  427 (567)
Q Consensus       372 ~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~  427 (567)
                      ..    ++++||+||||+|++|+|+..+||.||+                        ++|++|+..     .++|++..
T Consensus       109 ~~----~l~~anvGDsr~~l~r~~~~~~lt~dh~~~~~~~~~g~i~~~~~~~~~~~~~ltralG~~~-----~~~p~~~~  179 (240)
T 2j82_A          109 GD----RAWCAHVGDSRIYRWRKDQLQQITSDHTWIAQAVQLGSLTIEQARQHPWRHVLSQCLGRED-----LSQIDIQP  179 (240)
T ss_dssp             SS----EEEEEEESSCEEEEEETTEEEECSCCCBHHHHC----------------CCCBSCCBSCTT-----CCCCEEEE
T ss_pred             CC----EEEEEEEccCceEEEeCCEEEEECCCCcHHHHHHHcCCCCHHHHhcCCCcCeEeecCCCCC-----ceeEEEEE
Confidence            44    8999999999999999999999999997                        466777643     56899999


Q ss_pred             EEecCCCeEEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEe
Q psy12423        428 VMLHENDHFLILANKSVS---------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRF  474 (567)
Q Consensus       428 ~~l~~~d~~lil~sDGl~---------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~  474 (567)
                      +.+.++|. |||||||||               +++.+|+.|++.|..+|+.|||||+||++
T Consensus       180 ~~l~~gd~-lll~SDGl~d~l~~~~i~~~l~~~~~~~~a~~l~~~a~~~g~~DniTvivv~~  240 (240)
T 2j82_A          180 IDLEPGDR-LLLCSDGLTEELTDDVISIYLSEPNVQKAAAALVDAAKTHGGRDNVTVVVISV  240 (240)
T ss_dssp             EECCTTCE-EEEECHHHHTTSCHHHHHHHHTCSSHHHHHHHHHHHHHHTTCCSCEEEEEEEC
T ss_pred             EeeCCCCE-EEEECCCCCCCCCHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCeEEEEEeC
Confidence            99999765 779999999               57889999999999999999999999975

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.86  E-value=8.4e-21  Score=194.80  Aligned_cols=233  Identities=21%  Similarity=0.249  Sum_probs=156.2

Q ss_pred             cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK   81 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l   81 (567)
                      ++++.+++++++||..+.  ++|++|+|++|+|+.+|+..|.                                    .+
T Consensus        12 ~~v~C~~~~Lt~iP~~l~--~~l~~L~Ls~N~i~~i~~~~f~------------------------------------~l   53 (350)
T 4ay9_X           12 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFS------------------------------------GF   53 (350)
T ss_dssp             TEEEEESTTCCSCCTTCC--TTCSEEEEESCCCSEECTTSST------------------------------------TC
T ss_pred             CEEEecCCCCCccCcCcC--CCCCEEEccCCcCCCcCHHHHc------------------------------------CC
Confidence            356777888888887653  5788888888888888765543                                    34


Q ss_pred             CCccEEEecCCCCCCcc---ccCCCCCccE-EEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCC
Q psy12423         82 GELTSVNLRSNQLKGTI---ILGNYGNLTT-LDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGN  154 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~---~l~~l~~L~~-L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~  154 (567)
                      ++|++|+|++|++.+..   .|.++++|.+ +.+..|+++.++   +..+++|++|++++|++..++             
T Consensus        54 ~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~-------------  120 (350)
T 4ay9_X           54 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLP-------------  120 (350)
T ss_dssp             TTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCC-------------
T ss_pred             CCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCC-------------
Confidence            47788888888876533   4667777654 556667777764   455666777777666665443             


Q ss_pred             CccccccCCCC--CCcccEEeccc-CCCCCccc-ccCCCc-CCcEEECcCCCCCCCChhhhhccCCCccEEECCC-CCCC
Q psy12423        155 NKLQSLIVSPR--PARLQHLDISY-NELESLPD-WIDTCP-ELETIFASHNRITQLPSQFFCRELGKLHTLQLSF-NRLT  228 (567)
Q Consensus       155 n~l~~~~~~~~--~~~L~~L~Ls~-n~l~~lp~-~l~~l~-~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~-N~l~  228 (567)
                             ...+  ..++..|++.+ +.+..++. .|..+. .++.|+|++|+|+.++...|.  ..+|++|++++ |.++
T Consensus       121 -------~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~--~~~L~~l~l~~~n~l~  191 (350)
T 4ay9_X          121 -------DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFN--GTQLDELNLSDNNNLE  191 (350)
T ss_dssp             -------CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSST--TEEEEEEECTTCTTCC
T ss_pred             -------chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCChhhcc--ccchhHHhhccCCccc
Confidence                   2222  23456666654 46666653 455543 577788888888888877775  56788888864 6777


Q ss_pred             CCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEcc-CCcCCCCCCCCcCCccceeecccCCccc
Q psy12423        229 SLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS-KNCLKMLPSLQKGFYLLNISQLRLPGFC  298 (567)
Q Consensus       229 ~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls-~N~l~~ip~~~~~~~~L~~~~l~~~~~~  298 (567)
                      .+|. .|..+++|++|+|++|+|+.+|...|.   +|+.|.+. .+.++.+|+ ...+.+|..+++..+..|
T Consensus       192 ~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~---~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~~c  259 (350)
T 4ay9_X          192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLE---NLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPSHC  259 (350)
T ss_dssp             CCCTTTTTTEECCSEEECTTSCCCCCCSSSCT---TCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHHHH
T ss_pred             CCCHHHhccCcccchhhcCCCCcCccChhhhc---cchHhhhccCCCcCcCCC-chhCcChhhCcCCCCccc
Confidence            7775 467788888888888888888876544   44444433 345777774 556777777777666555

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.86  E-value=1.2e-20  Score=186.77  Aligned_cols=196  Identities=26%  Similarity=0.291  Sum_probs=153.2

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL  157 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l  157 (567)
                      +|++|++++|++++..  .+..+++|++|++++|.++.++   +..+++|++|++++|.+                    
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l--------------------   88 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI--------------------   88 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC--------------------
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc--------------------
Confidence            6778888888877654  5677778888888888777653   44455555555555554                    


Q ss_pred             ccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCC--CChhhhhccCCCccEEECCCCCCCCCc-
Q psy12423        158 QSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQ--LPSQFFCRELGKLHTLQLSFNRLTSLP-  231 (567)
Q Consensus       158 ~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~--l~~~~~~~~l~~L~~L~Ls~N~l~~lp-  231 (567)
                      +.+.+..+  +++|++|++++|.+..++. .+..+++|++|++++|.++.  +|..+. . +++|++|+|++|+++.++ 
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~-~-l~~L~~L~Ls~N~l~~~~~  166 (276)
T 2z62_A           89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS-N-LTNLEHLDLSSNKIQSIYC  166 (276)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGG-G-CTTCCEEECCSSCCCEECG
T ss_pred             CccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhc-c-CCCCCEEECCCCCCCcCCH
Confidence            44444333  6799999999999998865 78999999999999999997  455544 3 899999999999999865 


Q ss_pred             hhhhCCCCCc----EEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccCC
Q psy12423        232 SLIRQIASLK----YLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNSD  301 (567)
Q Consensus       232 ~~~~~l~~L~----~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~~  301 (567)
                      ..+..+++|+    .|++++|.++.+++..+. ..+|+.|+|++|+++.+|... ..+.+|..+++..|.+.+.+
T Consensus       167 ~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          167 TDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             GGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             HHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            3565555555    899999999999988764 458999999999999999875 46888988899888887654

>3rnr_A Stage II sporulation E family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.00A {Thermanaerovibrio acidaminovorans}

Probab=99.85  E-value=1.5e-20  Score=178.43  Aligned_cols=159  Identities=13%  Similarity=0.090  Sum_probs=111.3

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhh----cccccCceeEEEEeec--Ccc
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDS----LHRYSLSATLCHLSLH--PVT  374 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~----~~~~~~st~~~~~~~~--~~~  374 (567)
                      ..++.++||+++..............+.+.......+    ..++..+++.+...    ....++++|++.+.+.  .. 
T Consensus        10 ~~l~~VaDG~GG~~~g~~AS~~~~~~l~~~~~~~~~~----~~~~~~an~~l~~~~~~~~~~~~~GtT~~~~~i~~~~~-   84 (211)
T 3rnr_A           10 KAYCVVVDGMGGMIRGDEAAQRALSASVGVLDAGGSP----LDAVLAAQAAVHRWASQGGILGRTGATMAVAAVNLRDG-   84 (211)
T ss_dssp             EEEEEEEEECTTSTTHHHHHHHHHHHHHHHHHTTCCH----HHHHHHHHHHHHHHHHHTTCTTSCCEEEEEEEEETTTT-
T ss_pred             ccEEEEEeCCcCcHHHHHHHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHhhccCCCCcchhheeeeeeeCCC-
Confidence            5678899998876665555554444443322211222    34555555555433    2334566776666666  44 


Q ss_pred             ceEEEEEEEecCceEEEEeCCeeeeCCCCCC--------------------CCCCCCCCCCCCCccCCCce--EEEEecC
Q psy12423        375 HRYMLHIASVGEAKAILCRQAGSLTFTHAPT--------------------LSPPVPPQGSCPLSFPDPHV--TEVMLHE  432 (567)
Q Consensus       375 ~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~--------------------~~r~~g~~~~~~~~~~~p~v--~~~~l~~  432 (567)
                         ++++||+||||+|++|+|+..+||+||+                    ++|++|...     .++|++  ..+++.+
T Consensus        85 ---~~~~anvGDSr~yl~r~g~~~~lt~dh~~~~~~~~~g~~~~~~~~~~~ltralG~~~-----~~~~~~~~~~~~l~~  156 (211)
T 3rnr_A           85 ---TLEWASVGDCRVYLFKGGRLSRLSLDHNVSSEMVLLGRGPVPGPAGEMITSFIGIEN-----LTEISTSEAPLPLEA  156 (211)
T ss_dssp             ---EEEEEEESSCEEEEEETTEEEECCCCCBHHHHHHHTTSCCCCSHHHHCBSCCBTCSS-----CCCCEECSSCEECCT
T ss_pred             ---EEEEEEEccCeEEEEeCCEEEEECCCcHHHHHHHHcCCChhhCCCccEEecccCCCC-----CcceeEecceecCCC
Confidence               8899999999999999999999999996                    478888644     457888  7889998


Q ss_pred             CCeEEEEEcCCCC-------------CHHHHHHHHHHHHHHcC--CCCCcEEEEEEe
Q psy12423        433 NDHFLILANKSVS-------------EPVLAAKRIQDLAQSYG--SEDNLSVLVLRF  474 (567)
Q Consensus       433 ~d~~lil~sDGl~-------------~~~~~a~~l~~~a~~~g--~~dnit~~vv~~  474 (567)
                      +|.| ||||||||             .... |+.|++.|..+|  +.|||||+||++
T Consensus       157 gd~l-lL~SDGl~d~~~~~~i~~~l~~~~~-a~~L~~~a~~~g~~~~DNiTvivv~L  211 (211)
T 3rnr_A          157 GEGV-LVVSDGVYRSLHEDRIAMALSRGSD-ARGILQEVEAQGRPYQDNATLALVIL  211 (211)
T ss_dssp             TCEE-EEEEC-----CCTTEEEEEECTTSC-HHHHHHHHHHSCTTSCSSCEEEEEEC
T ss_pred             CCEE-EEEcCCCCCCcCHHHHHHHHhcCCh-HHHHHHHHHHcCCCCCCceEEEEEeC
Confidence            7655 68999999             1111 999999999999  999999999985

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=9.3e-21  Score=190.91  Aligned_cols=206  Identities=17%  Similarity=0.266  Sum_probs=179.6

Q ss_pred             EEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee--cCCCCCcEEEcCCCccccccCC
Q psy12423         87 VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLIVS  163 (567)
Q Consensus        87 L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~~~  163 (567)
                      +.+..+.+........+++|+.|++++|.++.++ +..+++|++|++++|.+..+.  ..+++|+.|++++|.++.++..
T Consensus        24 ~~l~~~~~~~~~~~~~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~~~~  103 (308)
T 1h6u_A           24 IAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAI  103 (308)
T ss_dssp             HHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGG
T ss_pred             HHhCCCCcCceecHHHcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCchhh
Confidence            3455566666556667889999999999999874 778999999999999998876  4678999999999999998654


Q ss_pred             CCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEE
Q psy12423        164 PRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL  243 (567)
Q Consensus       164 ~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L  243 (567)
                      ..+++|++|++++|.++.++. +..+++|++|++++|.++.++.  +.. +++|+.|+|++|.++.++. +..+++|+.|
T Consensus       104 ~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~--l~~-l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L  178 (308)
T 1h6u_A          104 AGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISP--LAG-LTNLQYLSIGNAQVSDLTP-LANLSKLTTL  178 (308)
T ss_dssp             TTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGG-CTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred             cCCCCCCEEECCCCCCCCchh-hcCCCCCCEEECCCCccCcCcc--ccC-CCCccEEEccCCcCCCChh-hcCCCCCCEE
Confidence            448999999999999999876 8999999999999999998877  333 8999999999999999887 8899999999


Q ss_pred             EccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccC
Q psy12423        244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      ++++|.++.+++  +..+++|+.|+|++|+++.+|+ +..+++|..+++..|.+.+.
T Consensus       179 ~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~-l~~l~~L~~L~l~~N~i~~~  232 (308)
T 1h6u_A          179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTLTNQTITNQ  232 (308)
T ss_dssp             ECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEEEEEEEECC
T ss_pred             ECCCCccCcChh--hcCCCCCCEEEccCCccCcccc-ccCCCCCCEEEccCCeeecC
Confidence            999999999987  6799999999999999999984 66788888888888877665

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=8.3e-21  Score=187.73  Aligned_cols=175  Identities=26%  Similarity=0.364  Sum_probs=111.4

Q ss_pred             cCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee--cCCCCCcEEEcCCCccccccCCCC--CCcccEEec
Q psy12423        100 LGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDI  174 (567)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~L  174 (567)
                      ...+++|+.|++++|.++.++ +..+++|++|++++|.+..+.  ..+++|+.|++++|.++.+++..+  +++|++|++
T Consensus        37 ~~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  116 (272)
T 3rfs_A           37 QNELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVL  116 (272)
T ss_dssp             HHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             cccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEEC
Confidence            333444444444444444432 344444444444444444332  234455555555555555555443  667777777


Q ss_pred             ccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccCCCCCC
Q psy12423        175 SYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSINI  252 (567)
Q Consensus       175 s~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~  252 (567)
                      ++|.++.++. .+..+++|++|++++|.++.++...+.. +++|+.|+|++|+++.++.. +..+++|++|++++|.++.
T Consensus       117 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  195 (272)
T 3rfs_A          117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDK-LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKS  195 (272)
T ss_dssp             TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             CCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhcc-CccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCc
Confidence            7777776654 4677777788888777777777766554 77778888887777776553 5677778888888887777


Q ss_pred             CchhhhcCCCCCcEEEccCCcCC
Q psy12423        253 LPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       253 l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      +++..+..+++|+.|++++|++.
T Consensus       196 ~~~~~~~~l~~L~~L~l~~N~~~  218 (272)
T 3rfs_A          196 VPDGVFDRLTSLQYIWLHDNPWD  218 (272)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCBC
T ss_pred             cCHHHHhCCcCCCEEEccCCCcc
Confidence            77777777777888888877766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.85  E-value=7.7e-21  Score=187.96  Aligned_cols=199  Identities=23%  Similarity=0.316  Sum_probs=174.6

Q ss_pred             CCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceec----CCCCCcEEEcC
Q psy12423         79 EVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVL----NGSSLISVIAG  153 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~----~~~~L~~L~l~  153 (567)
                      ..+++|+.|++++|.++....+..+++|++|++++|.++.++ +..+++|++|++++|.++.++.    .+++|+.|+++
T Consensus        38 ~~l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  117 (272)
T 3rfs_A           38 NELNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV  117 (272)
T ss_dssp             HHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence            346789999999999998778889999999999999999875 7889999999999999998763    46899999999


Q ss_pred             CCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423        154 NNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL  230 (567)
Q Consensus       154 ~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l  230 (567)
                      +|.++.+++..+  +++|++|++++|.++.+|. .+..+++|+.|++++|+++.++...+.. +++|+.|+|++|.++++
T Consensus       118 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~L~~N~l~~~  196 (272)
T 3rfs_A          118 ENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDK-LTQLKDLRLYQNQLKSV  196 (272)
T ss_dssp             TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCC
T ss_pred             CCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcC-CccCCEEECCCCcCCcc
Confidence            999999888765  8999999999999998865 5789999999999999999999887765 89999999999999997


Q ss_pred             ch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCc
Q psy12423        231 PS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFY  285 (567)
Q Consensus       231 p~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~  285 (567)
                      +. .+..+++|++|+|++|.+.       ..++.|+.|+++.|.++ .+|..+..+.
T Consensus       197 ~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          197 PDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             CHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCcccCcccccC
Confidence            76 4789999999999999876       34678899999999998 7887665543

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.85  E-value=7e-23  Score=218.03  Aligned_cols=260  Identities=20%  Similarity=0.172  Sum_probs=123.8

Q ss_pred             CcEEEccCCCCC-----cCCccCCCCCCCCEEeCcCCCCCC-CChhhhccCc----CchhhhhhccchhhccccccccCC
Q psy12423          1 LQEFRVDRNDLT-----EFPGNQDSFPRLKFLSAAQNRISH-LPVFLRHPMS----PLNNVIEHGIAEEREEDFEQDEDG   70 (567)
Q Consensus         1 L~~L~Ls~n~l~-----~lp~~~~~l~~L~~L~Ls~n~i~~-lp~~~~~~L~----~L~~l~~~~~~~~~~~~~~~~~~~   70 (567)
                      |++|+|++|.++     .++..+..+++|++|+|++|.++. .+..++..++    .|+.+             +...+.
T Consensus        30 L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L-------------~L~~n~   96 (461)
T 1z7x_W           30 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL-------------SLQNCC   96 (461)
T ss_dssp             CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE-------------ECTTSC
T ss_pred             ccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEE-------------EccCCC
Confidence            456666666665     334555566666666666666553 2222333222    23322             111111


Q ss_pred             cc-----cccCCCCCCCCccEEEecCCCCCCcc-------ccCCCCCccEEEccCCCCCCCC-------CcccccCcEEE
Q psy12423         71 II-----VERREPEVKGELTSVNLRSNQLKGTI-------ILGNYGNLTTLDVSENSIESLD-------LGALNRLESIK  131 (567)
Q Consensus        71 l~-----~~~~~~~~l~~L~~L~Ls~n~l~~~~-------~l~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~~L~  131 (567)
                      +.     ..+..+..+++|++|+|++|.++...       .....++|++|++++|.++...       +..+++|++|+
T Consensus        97 i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  176 (461)
T 1z7x_W           97 LTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELT  176 (461)
T ss_dssp             CBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEE
Confidence            11     22334455667777777777665321       1223455666666666665421       33446666666


Q ss_pred             cccCccccee---------cCCCCCcEEEcCCCccccccCC----CC--CCcccEEecccCCCCCc------ccccCCCc
Q psy12423        132 CSRNQLKTLV---------LNGSSLISVIAGNNKLQSLIVS----PR--PARLQHLDISYNELESL------PDWIDTCP  190 (567)
Q Consensus       132 ls~n~l~~l~---------~~~~~L~~L~l~~n~l~~~~~~----~~--~~~L~~L~Ls~n~l~~l------p~~l~~l~  190 (567)
                      +++|.+....         ...++|+.|++++|.++.....    .+  +++|++|++++|.++..      +..+..++
T Consensus       177 L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~  256 (461)
T 1z7x_W          177 VSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS  256 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             CcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC
Confidence            6666655321         1234666666666665543211    11  45566666666655421      12223455


Q ss_pred             CCcEEECcCCCCCC-----CChhhhhccCCCccEEECCCCCCCCC-----chhh-hCCCCCcEEEccCCCCCCCc----h
Q psy12423        191 ELETIFASHNRITQ-----LPSQFFCRELGKLHTLQLSFNRLTSL-----PSLI-RQIASLKYLFLQSNSINILP----Q  255 (567)
Q Consensus       191 ~L~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~Ls~N~l~~l-----p~~~-~~l~~L~~L~Ls~N~l~~l~----~  255 (567)
                      +|++|++++|.++.     ++..+..  +++|++|+|++|.++..     ...+ ...++|++|++++|.++...    +
T Consensus       257 ~L~~L~L~~n~l~~~~~~~l~~~l~~--~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~  334 (461)
T 1z7x_W          257 RLRTLWIWECGITAKGCGDLCRVLRA--KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFS  334 (461)
T ss_dssp             CCCEEECTTSCCCHHHHHHHHHHHHH--CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHH
T ss_pred             CceEEECcCCCCCHHHHHHHHHHHhh--CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHH
Confidence            55556665555553     3332221  45555555555554421     1111 11234555555555544321    1


Q ss_pred             hhhcCCCCCcEEEccCCcCC
Q psy12423        256 LFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       256 ~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      ..+..+++|++|++++|+++
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCH
T ss_pred             HHHhhCCCccEEEccCCccc
Confidence            12234455555555555544

>2jfr_A Ser-Thr phosphatase MSPP; hydrolase, PPM phosphatase, manganese, phosphate; 0.83A {Mycobacterium smegmatis} PDB: 2jfs_A 2jft_A 2v06_A

Probab=99.84  E-value=1.9e-20  Score=180.82  Aligned_cols=159  Identities=16%  Similarity=0.209  Sum_probs=125.7

Q ss_pred             CcceeeccCCCCc--hhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhccccc--CceeEEEEeecCccce
Q psy12423        301 DALIGIFDSGDNG--DIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYS--LSATLCHLSLHPVTHR  376 (567)
Q Consensus       301 ~~~~~~~dg~~~~--~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~--~st~~~~~~~~~~~~~  376 (567)
                      ..++.++||+++.  ..+......+...+...    .. .+++..++..+++.+........  +++|++.+.+.+.   
T Consensus        29 ~~~~~V~DG~Gg~G~~as~~~~~~l~~~~~~~----~~-~~~l~~~~~~~~~~l~~~~~~~~~~~gtT~~~~~i~~~---  100 (234)
T 2jfr_A           29 GILYAVADGFGARGHHASATALKTLSAGFAAA----PD-RDGLLEAVQQANLRVFELLGDEPTVSGTTLTAVAVFEP---  100 (234)
T ss_dssp             TTEEEEEEEESTTHHHHHHHHHHHHHHHHHHS----CS-HHHHHHHHHHHHHHHHHHHTTSSSCCEECEEEEECCCG---
T ss_pred             CcEEEEEeCCCccHHHHHHHHHHHHHHHHhcC----Cc-HHHHHHHHHHHHHHHHHhhccCCCCCCccEEEEEEECC---
Confidence            4688999998865  55666666666655433    11 67888999999998876543321  5566665666554   


Q ss_pred             EE---EEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEEEE
Q psy12423        377 YM---LHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTEVM  429 (567)
Q Consensus       377 ~~---l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~~~  429 (567)
                       .   ++++|+||||+|++|+|+..+||+||+                        ++|++|+..     .++|++..++
T Consensus       101 -~~~~l~~anvGDsr~~l~r~g~~~~lt~dh~~~~~~~~~g~i~~~~~~~~~~~~~~tralG~~~-----~~~~~~~~~~  174 (234)
T 2jfr_A          101 -GQGGPLVVNIGDSPLYRIRDGHMEQLTDDHSVAGELVRMGEITRHEARWHPQRHLLTRALGIGP-----HIGPDVFGID  174 (234)
T ss_dssp             -GGTSCEEEEESSCCEEEEETTEEEECSCCCBHHHHHHHTTSSCHHHHTTCTTTTCBSCCBSSSS-----CCCCEEEECC
T ss_pred             -CccEEEEEEEccCceEEEECCEEEEeCCCCCHHHHHHHcCCCCHHHHhcCcccceeeecCcCCC-----CceeEEEEEe
Confidence             5   899999999999999999999999997                        367777643     5689999999


Q ss_pred             ecCCCeEEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEe
Q psy12423        430 LHENDHFLILANKSVS---------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRF  474 (567)
Q Consensus       430 l~~~d~~lil~sDGl~---------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~  474 (567)
                      +.++| +|||||||||               +|+.+|+.|++.|..+|+.|||||+||++
T Consensus       175 l~~gd-~lll~SDGl~d~~~~~~i~~~~~~~~~~~~a~~l~~~a~~~g~~DniTvivv~~  233 (234)
T 2jfr_A          175 CGPGD-RLLISSDGLFAAADEALIVDAATSPDPQVAVRRLVEVANDAGGSDNTTVVVIDL  233 (234)
T ss_dssp             CCTTC-EEEEECGGGGTTSCHHHHHHHHTCSSHHHHHHHHHHHHHHTTCCSCEEEEEEEE
T ss_pred             cCCCC-EEEEECCCCccccCHHHHHHHHccCCHHHHHHHHHHHHHHcCCCCCeEEEEEEe
Confidence            99875 5679999999               67889999999999999999999999987

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.84  E-value=2.6e-20  Score=201.97  Aligned_cols=184  Identities=23%  Similarity=0.255  Sum_probs=129.0

Q ss_pred             CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccC
Q psy12423         83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIV  162 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~  162 (567)
                      +|++|+|++|.|+..+  ..+++|+.|++++|.|+.++. -..+|++|++++|+|+.++..+++|+.|++++|.++.++.
T Consensus        81 ~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~ip~-l~~~L~~L~Ls~N~l~~lp~~l~~L~~L~Ls~N~l~~lp~  157 (571)
T 3cvr_A           81 QITVLEITQNALISLP--ELPASLEYLDACDNRLSTLPE-LPASLKHLDVDNNQLTMLPELPALLEYINADNNQLTMLPE  157 (571)
T ss_dssp             TCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSCCCC-CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred             CCCEEECcCCCCcccc--cccCCCCEEEccCCCCCCcch-hhcCCCEEECCCCcCCCCCCcCccccEEeCCCCccCcCCC
Confidence            5677777777776544  556777777777777776653 2227777777777777766666778888888888877655


Q ss_pred             CCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCc-------cEEECCCCCCCCCchhhh
Q psy12423        163 SPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKL-------HTLQLSFNRLTSLPSLIR  235 (567)
Q Consensus       163 ~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L-------~~L~Ls~N~l~~lp~~~~  235 (567)
                        .+++|++|+|++|.|+.+|. +.  ++|+.|+|++|.|+.+|. +    ..+|       +.|+|++|.|+.+|..+.
T Consensus       158 --~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~~lp~-~----~~~L~~~~~~L~~L~Ls~N~l~~lp~~l~  227 (571)
T 3cvr_A          158 --LPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLESLPA-V----PVRNHHSEETEIFFRCRENRITHIPENIL  227 (571)
T ss_dssp             --CCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCSSCCC-C----C--------CCEEEECCSSCCCCCCGGGG
T ss_pred             --cCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCCchhh-H----HHhhhcccccceEEecCCCcceecCHHHh
Confidence              56789999999999999888 65  899999999999998888 3    2266       999999999999999888


Q ss_pred             CCCCCcEEEccCCCCCCCchhhhcCCCC-------CcEEEccCCcCCCCCC
Q psy12423        236 QIASLKYLFLQSNSINILPQLFLQNSSK-------LKVLNISKNCLKMLPS  279 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~l~~l~~~~l~~l~~-------L~~L~Ls~N~l~~ip~  279 (567)
                      .+++|+.|+|++|.|++..+..+..++.       -..+++++|.+..+|.
T Consensus       228 ~l~~L~~L~L~~N~l~~~~p~~l~~l~~~~~~~~~~~~~~l~~~~~~~~~~  278 (571)
T 3cvr_A          228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHR  278 (571)
T ss_dssp             GSCTTEEEECCSSSCCHHHHHHHHHHHHSCC---CEEECCC----------
T ss_pred             cCCCCCEEEeeCCcCCCcCHHHHHHhhcCccccCCeeEEeecccccccccc
Confidence            8999999999999998655544443321       1234566666665554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.83  E-value=3.3e-20  Score=201.10  Aligned_cols=177  Identities=26%  Similarity=0.316  Sum_probs=155.0

Q ss_pred             CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccC
Q psy12423         83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIV  162 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~  162 (567)
                      +|+.|+|++|.+++.+. .-+++|++|++++|.|+.++ ..+++|++|++++|+|+.++.-..+|+.|++++|.++.++.
T Consensus        60 ~L~~L~Ls~n~L~~lp~-~l~~~L~~L~Ls~N~l~~ip-~~l~~L~~L~Ls~N~l~~ip~l~~~L~~L~Ls~N~l~~lp~  137 (571)
T 3cvr_A           60 QFSELQLNRLNLSSLPD-NLPPQITVLEITQNALISLP-ELPASLEYLDACDNRLSTLPELPASLKHLDVDNNQLTMLPE  137 (571)
T ss_dssp             TCSEEECCSSCCSCCCS-CCCTTCSEEECCSSCCSCCC-CCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSCCCC
T ss_pred             CccEEEeCCCCCCccCH-hHcCCCCEEECcCCCCcccc-cccCCCCEEEccCCCCCCcchhhcCCCEEECCCCcCCCCCC
Confidence            79999999999988552 12478999999999999988 78899999999999999877622399999999999999776


Q ss_pred             CCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC--
Q psy12423        163 SPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL--  240 (567)
Q Consensus       163 ~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L--  240 (567)
                        .+++|+.|+|++|.|+.+|.   .+++|+.|+|++|.|+.+|.  +   .++|+.|+|++|.|+.+|. +..  +|  
T Consensus       138 --~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~L~~lp~--l---~~~L~~L~Ls~N~L~~lp~-~~~--~L~~  204 (571)
T 3cvr_A          138 --LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQLTFLPE--L---PESLEALDVSTNLLESLPA-VPV--RNHH  204 (571)
T ss_dssp             --CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSCCCC--C---CTTCCEEECCSSCCSSCCC-CC-------
T ss_pred             --cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCCCCCcch--h---hCCCCEEECcCCCCCchhh-HHH--hhhc
Confidence              68899999999999999987   57899999999999999998  3   3799999999999999988 543  77  


Q ss_pred             -----cEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        241 -----KYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       241 -----~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                           +.|+|++|.|+.+|..++ .+++|+.|+|++|+|+
T Consensus       205 ~~~~L~~L~Ls~N~l~~lp~~l~-~l~~L~~L~L~~N~l~  243 (571)
T 3cvr_A          205 SEETEIFFRCRENRITHIPENIL-SLDPTCTIILEDNPLS  243 (571)
T ss_dssp             ---CCEEEECCSSCCCCCCGGGG-GSCTTEEEECCSSSCC
T ss_pred             ccccceEEecCCCcceecCHHHh-cCCCCCEEEeeCCcCC
Confidence                 999999999999999876 4999999999999997

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.83  E-value=2.9e-20  Score=180.03  Aligned_cols=199  Identities=17%  Similarity=0.229  Sum_probs=162.6

Q ss_pred             CCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEE
Q psy12423          8 RNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSV   87 (567)
Q Consensus         8 ~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L   87 (567)
                      .+.++++|. +.  ++|++|+|++|+|+.+|+..+.                                    .+++|++|
T Consensus        20 c~~l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~------------------------------------~l~~L~~L   60 (239)
T 2xwt_C           20 CKDIQRIPS-LP--PSTQTLKLIETHLRTIPSHAFS------------------------------------NLPNISRI   60 (239)
T ss_dssp             ECSCSSCCC-CC--TTCCEEEEESCCCSEECTTTTT------------------------------------TCTTCCEE
T ss_pred             ccCccccCC-CC--CcccEEEEeCCcceEECHHHcc------------------------------------CCCCCcEE
Confidence            334788887 44  3899999999999988765432                                    34578888


Q ss_pred             EecCCC-CCCcc--ccCCCCCccEEEccC-CCCCCCC---CcccccCcEEEcccCccccee--cCCCCCc---EEEcCCC
Q psy12423         88 NLRSNQ-LKGTI--ILGNYGNLTTLDVSE-NSIESLD---LGALNRLESIKCSRNQLKTLV--LNGSSLI---SVIAGNN  155 (567)
Q Consensus        88 ~Ls~n~-l~~~~--~l~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~~L~ls~n~l~~l~--~~~~~L~---~L~l~~n  155 (567)
                      ++++|. ++...  .+.++++|++|++++ |.++.++   +..+++|++|++++|.++.++  ..+++|+   .|++++|
T Consensus        61 ~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N  140 (239)
T 2xwt_C           61 YVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDN  140 (239)
T ss_dssp             EEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEEEEECCCSCCCCTTCCBCCSEEEEEEESC
T ss_pred             eCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeCCCCCCccccccccccccccccEEECCCC
Confidence            999986 77655  577888999999988 8888764   557888999999999888766  3456666   9999999


Q ss_pred             -ccccccCCCC--CCccc-EEecccCCCCCcccccCCCcCCcEEECcCCC-CCCCChhhhhccC-CCccEEECCCCCCCC
Q psy12423        156 -KLQSLIVSPR--PARLQ-HLDISYNELESLPDWIDTCPELETIFASHNR-ITQLPSQFFCREL-GKLHTLQLSFNRLTS  229 (567)
Q Consensus       156 -~l~~~~~~~~--~~~L~-~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~~l-~~L~~L~Ls~N~l~~  229 (567)
                       .++.+++..+  +++|+ +|++++|.++.+|......++|+.|++++|+ ++.++...|.. + ++|+.|+|++|+++.
T Consensus       141 ~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~-l~~~L~~L~l~~N~l~~  219 (239)
T 2xwt_C          141 PYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGG-VYSGPSLLDVSQTSVTA  219 (239)
T ss_dssp             TTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTCEEEEEECTTCTTCCEECTTTTTT-CSBCCSEEECTTCCCCC
T ss_pred             cchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhc-cccCCcEEECCCCcccc
Confidence             8988887766  88999 9999999999988754444899999999995 99998888776 7 899999999999999


Q ss_pred             CchhhhCCCCCcEEEccCC
Q psy12423        230 LPSLIRQIASLKYLFLQSN  248 (567)
Q Consensus       230 lp~~~~~l~~L~~L~Ls~N  248 (567)
                      +|..  .+++|+.|+++++
T Consensus       220 l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          220 LPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCCT--TCTTCSEEECTTC
T ss_pred             CChh--HhccCceeeccCc
Confidence            9875  6889999999886

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.4e-19  Score=176.60  Aligned_cols=173  Identities=25%  Similarity=0.389  Sum_probs=113.1

Q ss_pred             CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423         83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS  159 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~  159 (567)
                      ..++++++++.++..+. .-.++|+.|++++|.++.+.   +..+++                    |+.|++++|.++.
T Consensus        15 ~~~~l~~~~~~l~~~p~-~~~~~l~~L~L~~n~l~~~~~~~~~~l~~--------------------L~~L~L~~n~l~~   73 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPS-GIPADTEKLDLQSTGLATLSDATFRGLTK--------------------LTWLNLDYNQLQT   73 (251)
T ss_dssp             GGTEEECTTCCCSSCCS-CCCTTCCEEECTTSCCCCCCTTTTTTCTT--------------------CCEEECTTSCCCC
T ss_pred             CCeEEecCCCCccccCC-CCCCCCCEEEccCCCcCccCHhHhcCccc--------------------CCEEECCCCcCCc
Confidence            34556666665554431 11145555666655555542   333334                    4444444444444


Q ss_pred             ccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhh
Q psy12423        160 LIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIR  235 (567)
Q Consensus       160 ~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~  235 (567)
                      +.+..+  +++|++|+|++|.++.+| ..|..+++|++|+|++|.|+.++...+.. +++|++|+|++|+|+.+|. .+.
T Consensus        74 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~  152 (251)
T 3m19_A           74 LSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDR-LTKLKELRLNTNQLQSIPAGAFD  152 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTT
T ss_pred             cCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhcc-CCcccEEECcCCcCCccCHHHcC
Confidence            444333  567777888888777665 35677778888888888888777776654 7788888888888877766 567


Q ss_pred             CCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCC
Q psy12423        236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML  277 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i  277 (567)
                      .+++|++|+|++|.|+.+++..|..+++|+.|+|++|+++.-
T Consensus       153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            777888888888888877777777778888888888877644

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1e-20  Score=190.84  Aligned_cols=211  Identities=17%  Similarity=0.143  Sum_probs=113.3

Q ss_pred             CccEEEecCCCCCCcc-----ccCCCCCccEEEccCCCCCCCC---C--cccccCcEEEcccCccccee--------cCC
Q psy12423         83 ELTSVNLRSNQLKGTI-----ILGNYGNLTTLDVSENSIESLD---L--GALNRLESIKCSRNQLKTLV--------LNG  144 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~-----~l~~l~~L~~L~L~~n~l~~~~---~--~~l~~L~~L~ls~n~l~~l~--------~~~  144 (567)
                      .++.|.+.++.+....     .+..+++|++|++++|.+....   +  ..+++|++|++++|.+....        ..+
T Consensus        65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~  144 (310)
T 4glp_A           65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK  144 (310)
T ss_dssp             CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred             ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence            3455555555443211     1122344556666665555421   2  44555666666666555321        124


Q ss_pred             CCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCC---cc--cccCCCcCCcEEECcCCCCCCCChh---hhhccC
Q psy12423        145 SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELES---LP--DWIDTCPELETIFASHNRITQLPSQ---FFCREL  214 (567)
Q Consensus       145 ~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~---lp--~~l~~l~~L~~L~Ls~N~l~~l~~~---~~~~~l  214 (567)
                      ++|+.|++++|.++..++..+  +++|++|+|++|++..   ++  .++..+++|++|+|++|+++.++..   ++.. +
T Consensus       145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~-l  223 (310)
T 4glp_A          145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAA-G  223 (310)
T ss_dssp             SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHH-T
T ss_pred             cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhc-C
Confidence            556666666666655555444  5666666666666542   22  2235566666666666666544432   2222 5


Q ss_pred             CCccEEECCCCCCCCC-chhhhCC---CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceee
Q psy12423        215 GKLHTLQLSFNRLTSL-PSLIRQI---ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNIS  290 (567)
Q Consensus       215 ~~L~~L~Ls~N~l~~l-p~~~~~l---~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~  290 (567)
                      ++|++|+|++|.++.+ |..+..+   ++|++|+|++|+|+.+|..++   ++|+.|+|++|+|+.+|. ...++.|..+
T Consensus       224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~---~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L  299 (310)
T 4glp_A          224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLEQVPKGLP---AKLRVLDLSSNRLNRAPQ-PDELPEVDNL  299 (310)
T ss_dssp             CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCCSCCSCCC---SCCSCEECCSCCCCSCCC-TTSCCCCSCE
T ss_pred             CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCCchhhhhc---CCCCEEECCCCcCCCCch-hhhCCCccEE
Confidence            6666666666666654 5444443   466666666666666665442   566666666666666554 3445555555


Q ss_pred             cccCCccc
Q psy12423        291 QLRLPGFC  298 (567)
Q Consensus       291 ~l~~~~~~  298 (567)
                      ++..|.+.
T Consensus       300 ~L~~N~l~  307 (310)
T 4glp_A          300 TLDGNPFL  307 (310)
T ss_dssp             ECSSTTTS
T ss_pred             ECcCCCCC
Confidence            55555443

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.82  E-value=4.8e-21  Score=197.59  Aligned_cols=241  Identities=17%  Similarity=0.165  Sum_probs=172.5

Q ss_pred             EEEccCCCCCcC-CccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423          3 EFRVDRNDLTEF-PGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK   81 (567)
Q Consensus         3 ~L~Ls~n~l~~l-p~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l   81 (567)
                      ++.|+.|.++.. |..+...++|++|+|++|.|+.++.....                                ..+..+
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~--------------------------------~~l~~~   49 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELI--------------------------------QAFANT   49 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHH--------------------------------HHHHTC
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHH--------------------------------HHHHhC
Confidence            578999999954 55566666799999999999987752210                                001234


Q ss_pred             C-CccEEEecCCCCCCcc--ccCCC-----CCccEEEccCCCCCCCC-------Cccc-ccCcEEEcccCcccceec---
Q psy12423         82 G-ELTSVNLRSNQLKGTI--ILGNY-----GNLTTLDVSENSIESLD-------LGAL-NRLESIKCSRNQLKTLVL---  142 (567)
Q Consensus        82 ~-~L~~L~Ls~n~l~~~~--~l~~l-----~~L~~L~L~~n~l~~~~-------~~~l-~~L~~L~ls~n~l~~l~~---  142 (567)
                      + +|++|+|++|.++...  .+..+     ++|++|++++|.++...       +..+ ++|++|++++|.++....   
T Consensus        50 ~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l  129 (362)
T 3goz_A           50 PASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEF  129 (362)
T ss_dssp             CTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHH
Confidence            4 7999999999998754  33332     89999999999998754       3334 789999999999887652   


Q ss_pred             -----C-CCCCcEEEcCCCccccccCCCC-------CCcccEEecccCCCCCcc-c----ccCCC-cCCcEEECcCCCCC
Q psy12423        143 -----N-GSSLISVIAGNNKLQSLIVSPR-------PARLQHLDISYNELESLP-D----WIDTC-PELETIFASHNRIT  203 (567)
Q Consensus       143 -----~-~~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~Ls~n~l~~lp-~----~l~~l-~~L~~L~Ls~N~l~  203 (567)
                           . ..+|+.|++++|.++......+       ..+|++|+|++|.++... .    .+..+ ++|++|+|++|.|+
T Consensus       130 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~  209 (362)
T 3goz_A          130 KQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLG  209 (362)
T ss_dssp             HHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCC
Confidence                 1 3588888988888875443322       248888888888887443 2    34445 48888888888888


Q ss_pred             C-----CChhhhhccCCCccEEECCCCCCCCCch-----hhhCCCCCcEEEccCCCCCCCchh-------hhcCCCCCcE
Q psy12423        204 Q-----LPSQFFCRELGKLHTLQLSFNRLTSLPS-----LIRQIASLKYLFLQSNSINILPQL-------FLQNSSKLKV  266 (567)
Q Consensus       204 ~-----l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-----~~~~l~~L~~L~Ls~N~l~~l~~~-------~l~~l~~L~~  266 (567)
                      .     ++..+... .++|++|+|++|.|+..+.     .+..+++|+.|+|++|.+..+...       .+..+++|+.
T Consensus       210 ~~~~~~l~~~l~~~-~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~  288 (362)
T 3goz_A          210 LKSYAELAYIFSSI-PNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIIL  288 (362)
T ss_dssp             GSCHHHHHHHHHHS-CTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEE
T ss_pred             hhHHHHHHHHHhcC-CCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEE
Confidence            6     44444331 3588888888888887543     346778888888888886655543       3456778888


Q ss_pred             EEccCCcCCC
Q psy12423        267 LNISKNCLKM  276 (567)
Q Consensus       267 L~Ls~N~l~~  276 (567)
                      ||+++|++..
T Consensus       289 LdL~~N~l~~  298 (362)
T 3goz_A          289 VDKNGKEIHP  298 (362)
T ss_dssp             ECTTSCBCCG
T ss_pred             EecCCCcCCC
Confidence            8888888763

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.82  E-value=1.9e-21  Score=202.40  Aligned_cols=231  Identities=19%  Similarity=0.164  Sum_probs=177.4

Q ss_pred             cCCccCCCCCCCCEEeCcCCCCCCCC-hhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecC
Q psy12423         13 EFPGNQDSFPRLKFLSAAQNRISHLP-VFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRS   91 (567)
Q Consensus        13 ~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~   91 (567)
                      .++..+..+++|++|+|++|.|+... ..+.                                 ..+..+++|++|+|++
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~---------------------------------~~l~~~~~L~~L~Ls~   69 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLS---------------------------------ENIASKKDLEIAEFSD   69 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHH---------------------------------HTTTTCTTCCEEECCS
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHH---------------------------------HHHHhCCCccEEeCcc
Confidence            56667788899999999999888532 2221                                 1223456899999999


Q ss_pred             CCCCCcc------------ccCCCCCccEEEccCCCCCCC-------CCcccccCcEEEcccCccccee----c----CC
Q psy12423         92 NQLKGTI------------ILGNYGNLTTLDVSENSIESL-------DLGALNRLESIKCSRNQLKTLV----L----NG  144 (567)
Q Consensus        92 n~l~~~~------------~l~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~~L~ls~n~l~~l~----~----~~  144 (567)
                      |.+....            .+..+++|++|+|++|.+...       .+..+++|++|++++|.+....    .    .+
T Consensus        70 ~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l  149 (386)
T 2ca6_A           70 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL  149 (386)
T ss_dssp             CCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred             cccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHH
Confidence            7655321            246789999999999998873       2567889999999999886432    1    12


Q ss_pred             ---------CCCcEEEcCCCccccccCCC----C--CCcccEEecccCCCC------CcccccCCCcCCcEEECcCCCCC
Q psy12423        145 ---------SSLISVIAGNNKLQSLIVSP----R--PARLQHLDISYNELE------SLPDWIDTCPELETIFASHNRIT  203 (567)
Q Consensus       145 ---------~~L~~L~l~~n~l~~~~~~~----~--~~~L~~L~Ls~n~l~------~lp~~l~~l~~L~~L~Ls~N~l~  203 (567)
                               ++|+.|++++|.++......    +  +++|++|+|++|.++      -+|..+..+++|+.|+|++|.++
T Consensus       150 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~  229 (386)
T 2ca6_A          150 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  229 (386)
T ss_dssp             HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             hhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCC
Confidence                     79999999999987433221    1  679999999999998      23447889999999999999994


Q ss_pred             -----CCChhhhhccCCCccEEECCCCCCCC-----CchhhhC--CCCCcEEEccCCCCCC-----CchhhhcCCCCCcE
Q psy12423        204 -----QLPSQFFCRELGKLHTLQLSFNRLTS-----LPSLIRQ--IASLKYLFLQSNSINI-----LPQLFLQNSSKLKV  266 (567)
Q Consensus       204 -----~l~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~--l~~L~~L~Ls~N~l~~-----l~~~~l~~l~~L~~  266 (567)
                           .++..+..  +++|++|+|++|.|+.     ++..+..  +++|+.|+|++|.|+.     +|..++.++++|+.
T Consensus       230 ~~g~~~l~~~l~~--~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~  307 (386)
T 2ca6_A          230 HLGSSALAIALKS--WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  307 (386)
T ss_dssp             HHHHHHHHHHGGG--CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             cHHHHHHHHHHcc--CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence                 45554443  8899999999999986     3566643  8999999999999997     77777677899999


Q ss_pred             EEccCCcCCCCC
Q psy12423        267 LNISKNCLKMLP  278 (567)
Q Consensus       267 L~Ls~N~l~~ip  278 (567)
                      |++++|+++..+
T Consensus       308 L~l~~N~l~~~~  319 (386)
T 2ca6_A          308 LELNGNRFSEED  319 (386)
T ss_dssp             EECTTSBSCTTS
T ss_pred             EEccCCcCCcch
Confidence            999999998555

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.82  E-value=3.8e-20  Score=189.90  Aligned_cols=192  Identities=19%  Similarity=0.210  Sum_probs=147.6

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC-CC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCc
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES-LD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK  156 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~  156 (567)
                      ++++|+|++|+|+.+.  .|.++++|++|+|++|++.. ++   +..++++.+                   .+.+..|+
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~-------------------~l~~~~N~   91 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHE-------------------IRIEKANN   91 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCE-------------------EEEEEETT
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhh-------------------hhcccCCc
Confidence            6778888888887655  47778888888888887644 33   333444332                   23334455


Q ss_pred             cccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcC-CCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423        157 LQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS  232 (567)
Q Consensus       157 l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~  232 (567)
                      ++.+++..+  +++|++|++++|.++.+|. .+....++..|++.+ +.+..++...|......++.|+|++|+|+.+|.
T Consensus        92 l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~  171 (350)
T 4ay9_X           92 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN  171 (350)
T ss_dssp             CCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             ccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCCh
Confidence            555555554  7899999999999998875 455677888999966 689999888776523579999999999999988


Q ss_pred             hhhCCCCCcEEEccC-CCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeeccc
Q psy12423        233 LIRQIASLKYLFLQS-NSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLR  293 (567)
Q Consensus       233 ~~~~l~~L~~L~Ls~-N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~  293 (567)
                      ......+|+.|++.+ |.++.+|..+|..+++|++|+|++|+|+.+|... .++.+|+...+.
T Consensus       172 ~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~~  234 (350)
T 4ay9_X          172 SAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTY  234 (350)
T ss_dssp             TSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTCT
T ss_pred             hhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhhhccchHhhhccCC
Confidence            776778899999975 7899999999999999999999999999999764 367777766553

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.81  E-value=1.4e-22  Score=215.64  Aligned_cols=286  Identities=15%  Similarity=0.160  Sum_probs=205.6

Q ss_pred             CcEEEccCCCCCcCC--ccCCCCCCCCEEeCcCCCCCC-----CChhhhccCcCchhhhhhccchhhccccccccCC--c
Q psy12423          1 LQEFRVDRNDLTEFP--GNQDSFPRLKFLSAAQNRISH-----LPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDG--I   71 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp--~~~~~l~~L~~L~Ls~n~i~~-----lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~--l   71 (567)
                      |++|+|++|.++..+  ..+..+++|++|+|++|.++.     ++.. +..++.|+.+          ++..+....  .
T Consensus         5 l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~-l~~~~~L~~L----------~Ls~n~l~~~~~   73 (461)
T 1z7x_W            5 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSA-LRVNPALAEL----------NLRSNELGDVGV   73 (461)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHH-HHTCTTCCEE----------ECTTCCCHHHHH
T ss_pred             ceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHH-HHhCCCcCEE----------eCCCCcCChHHH
Confidence            578999999998553  347889999999999999884     2322 2344555544          111111110  1


Q ss_pred             ccccCCCC-CCCCccEEEecCCCCCCcc------ccCCCCCccEEEccCCCCCCCC--------CcccccCcEEEcccCc
Q psy12423         72 IVERREPE-VKGELTSVNLRSNQLKGTI------ILGNYGNLTTLDVSENSIESLD--------LGALNRLESIKCSRNQ  136 (567)
Q Consensus        72 ~~~~~~~~-~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~~--------~~~l~~L~~L~ls~n~  136 (567)
                      ......+. ..++|++|+|++|+++...      .+..+++|++|++++|.++...        ....++|++|++++|.
T Consensus        74 ~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~  153 (461)
T 1z7x_W           74 HCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCS  153 (461)
T ss_dssp             HHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred             HHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCC
Confidence            11111111 1227999999999998521      5788999999999999987532        2234579999999999


Q ss_pred             cccee--------cCCCCCcEEEcCCCccccccCCCC-------CCcccEEecccCCCCC-----cccccCCCcCCcEEE
Q psy12423        137 LKTLV--------LNGSSLISVIAGNNKLQSLIVSPR-------PARLQHLDISYNELES-----LPDWIDTCPELETIF  196 (567)
Q Consensus       137 l~~l~--------~~~~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~  196 (567)
                      ++...        ..+++|+.|++++|.++......+       .++|++|++++|.++.     ++..+..+++|++|+
T Consensus       154 l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~  233 (461)
T 1z7x_W          154 LSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA  233 (461)
T ss_dssp             CBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred             CCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEe
Confidence            88632        246899999999999877554433       3489999999999986     577788899999999


Q ss_pred             CcCCCCCCCC-----hhhhhccCCCccEEECCCCCCCC-----CchhhhCCCCCcEEEccCCCCCCCchhh-----hcCC
Q psy12423        197 ASHNRITQLP-----SQFFCRELGKLHTLQLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQLF-----LQNS  261 (567)
Q Consensus       197 Ls~N~l~~l~-----~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l~~~~-----l~~l  261 (567)
                      +++|.++...     ..++.. +++|++|+|++|.++.     ++..+..+++|++|+|++|.++......     ....
T Consensus       234 Ls~n~l~~~~~~~l~~~~~~~-~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~  312 (461)
T 1z7x_W          234 LGSNKLGDVGMAELCPGLLHP-SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG  312 (461)
T ss_dssp             CCSSBCHHHHHHHHHHHHTST-TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTT
T ss_pred             ccCCcCChHHHHHHHHHHhcC-CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCC
Confidence            9999987532     333323 7899999999999997     6777888999999999999998543332     2344


Q ss_pred             CCCcEEEccCCcCCC-----CCCCCcCCccceeecccCCccc
Q psy12423        262 SKLKVLNISKNCLKM-----LPSLQKGFYLLNISQLRLPGFC  298 (567)
Q Consensus       262 ~~L~~L~Ls~N~l~~-----ip~~~~~~~~L~~~~l~~~~~~  298 (567)
                      ++|+.|++++|.++.     +|..+..++.|..+++..|.+.
T Consensus       313 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~  354 (461)
T 1z7x_W          313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLE  354 (461)
T ss_dssp             CCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCH
T ss_pred             ccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccc
Confidence            799999999999984     3444445566777777666554

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.81  E-value=4.5e-20  Score=186.05  Aligned_cols=192  Identities=19%  Similarity=0.182  Sum_probs=160.4

Q ss_pred             CCCccEEEecCCCCCCcc--cc--CCCCCccEEEccCCCCCCC-------CCcccccCcEEEcccCcccceec----CCC
Q psy12423         81 KGELTSVNLRSNQLKGTI--IL--GNYGNLTTLDVSENSIESL-------DLGALNRLESIKCSRNQLKTLVL----NGS  145 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~--~l--~~l~~L~~L~L~~n~l~~~-------~~~~l~~L~~L~ls~n~l~~l~~----~~~  145 (567)
                      +++|++|++++|.+.+..  .+  ..+++|++|++++|.++..       .+..+++|++|++++|.+..++.    .++
T Consensus        90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~  169 (310)
T 4glp_A           90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP  169 (310)
T ss_dssp             HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred             cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence            457999999999998755  34  7899999999999999873       24568999999999999987763    578


Q ss_pred             CCcEEEcCCCcccc---ccCCC---CCCcccEEecccCCCCCccc----ccCCCcCCcEEECcCCCCCCC-Chhhhhc-c
Q psy12423        146 SLISVIAGNNKLQS---LIVSP---RPARLQHLDISYNELESLPD----WIDTCPELETIFASHNRITQL-PSQFFCR-E  213 (567)
Q Consensus       146 ~L~~L~l~~n~l~~---~~~~~---~~~~L~~L~Ls~n~l~~lp~----~l~~l~~L~~L~Ls~N~l~~l-~~~~~~~-~  213 (567)
                      +|+.|++++|++.+   +....   .+++|++|+|++|.++.++.    .+..+++|++|+|++|.++.+ |..+..- .
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            99999999999765   32222   27899999999999997765    357889999999999999976 5554331 0


Q ss_pred             CCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423        214 LGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM  276 (567)
Q Consensus       214 l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~  276 (567)
                      +++|++|+|++|+|+.+|..+.  ++|++|+|++|+|+++|.  +..+++|+.|+|++|+|+.
T Consensus       250 ~~~L~~L~Ls~N~l~~lp~~~~--~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          250 SSALNSLNLSFAGLEQVPKGLP--AKLRVLDLSSNRLNRAPQ--PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CTTCCCEECCSSCCCSCCSCCC--SCCSCEECCSCCCCSCCC--TTSCCCCSCEECSSTTTSC
T ss_pred             cCcCCEEECCCCCCCchhhhhc--CCCCEEECCCCcCCCCch--hhhCCCccEEECcCCCCCC
Confidence            3799999999999999998764  899999999999999876  5789999999999999873

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.81  E-value=3.4e-21  Score=200.39  Aligned_cols=243  Identities=20%  Similarity=0.202  Sum_probs=184.0

Q ss_pred             CcEEEccCCCCCc-----CCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccccc
Q psy12423          1 LQEFRVDRNDLTE-----FPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVER   75 (567)
Q Consensus         1 L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~   75 (567)
                      |++|+|++|.|+.     ++..|..+++|++|+|++|.+..+...++..+..|.                          
T Consensus        34 L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~--------------------------   87 (386)
T 2ca6_A           34 VKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLL--------------------------   87 (386)
T ss_dssp             CCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHH--------------------------
T ss_pred             ccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHH--------------------------
Confidence            6899999999984     455688999999999999987766544332222211                          


Q ss_pred             CCCCCCCCccEEEecCCCCCCc----c--ccCCCCCccEEEccCCCCCCCC-------Cccc---------ccCcEEEcc
Q psy12423         76 REPEVKGELTSVNLRSNQLKGT----I--ILGNYGNLTTLDVSENSIESLD-------LGAL---------NRLESIKCS  133 (567)
Q Consensus        76 ~~~~~l~~L~~L~Ls~n~l~~~----~--~l~~l~~L~~L~L~~n~l~~~~-------~~~l---------~~L~~L~ls  133 (567)
                      ..+..+++|++|+|++|.++..    .  .+..+++|++|+|++|.++...       +..+         ++|++|+++
T Consensus        88 ~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~  167 (386)
T 2ca6_A           88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICG  167 (386)
T ss_dssp             HHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECC
T ss_pred             HHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECC
Confidence            1124567999999999999873    2  5678899999999999997431       2333         899999999


Q ss_pred             cCcccc--ee------cCCCCCcEEEcCCCccccc-----cC--CCCCCcccEEecccCCC-----CCcccccCCCcCCc
Q psy12423        134 RNQLKT--LV------LNGSSLISVIAGNNKLQSL-----IV--SPRPARLQHLDISYNEL-----ESLPDWIDTCPELE  193 (567)
Q Consensus       134 ~n~l~~--l~------~~~~~L~~L~l~~n~l~~~-----~~--~~~~~~L~~L~Ls~n~l-----~~lp~~l~~l~~L~  193 (567)
                      +|.+..  ++      ..+++|+.|++++|.++..     .+  ...+++|++|+|++|.+     ..+|..+..+++|+
T Consensus       168 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~  247 (386)
T 2ca6_A          168 RNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR  247 (386)
T ss_dssp             SSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCC
T ss_pred             CCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcC
Confidence            999972  22      2578999999999999832     22  12278999999999999     46788899999999


Q ss_pred             EEECcCCCCCCC-----ChhhhhccCCCccEEECCCCCCCC-----Cchhh-hCCCCCcEEEccCCCCCCCch---hhhc
Q psy12423        194 TIFASHNRITQL-----PSQFFCRELGKLHTLQLSFNRLTS-----LPSLI-RQIASLKYLFLQSNSINILPQ---LFLQ  259 (567)
Q Consensus       194 ~L~Ls~N~l~~l-----~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~-~~l~~L~~L~Ls~N~l~~l~~---~~l~  259 (567)
                      .|+|++|.|+..     +..+....+++|+.|+|++|.|+.     +|..+ ..+++|++|+|++|.++...+   .+..
T Consensus       248 ~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~  327 (386)
T 2ca6_A          248 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIRE  327 (386)
T ss_dssp             EEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHH
T ss_pred             EEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHH
Confidence            999999999854     333321227899999999999997     88877 668999999999999997763   3333


Q ss_pred             CCCCCcEEEc
Q psy12423        260 NSSKLKVLNI  269 (567)
Q Consensus       260 ~l~~L~~L~L  269 (567)
                      .+++++.+++
T Consensus       328 ~l~~~~~~~l  337 (386)
T 2ca6_A          328 VFSTRGRGEL  337 (386)
T ss_dssp             HHHHHTCCEE
T ss_pred             HhhhcCcchh
Confidence            3444443333

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.80  E-value=1.3e-18  Score=169.81  Aligned_cols=174  Identities=25%  Similarity=0.316  Sum_probs=145.3

Q ss_pred             cCcEEEcccCcccceecC-CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCC
Q psy12423        126 RLESIKCSRNQLKTLVLN-GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNR  201 (567)
Q Consensus       126 ~L~~L~ls~n~l~~l~~~-~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~  201 (567)
                      ..+.++++++.++.++.. ..+++.|++++|.++.+.+..+  +++|++|+|++|.++.++ ..|..+++|++|+|++|.
T Consensus        15 ~~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~   94 (251)
T 3m19_A           15 GKKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ   94 (251)
T ss_dssp             GGTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             CCeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCc
Confidence            345556666655555532 2456677777777777766555  789999999999999875 468999999999999999


Q ss_pred             CCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423        202 ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL  280 (567)
Q Consensus       202 l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~  280 (567)
                      ++.++...+.. +++|++|+|++|.|+.+|.. +..+++|++|+|++|.|+.+++..|..+++|+.|+|++|+|+.+|+.
T Consensus        95 l~~~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~  173 (251)
T 3m19_A           95 LASLPLGVFDH-LTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG  173 (251)
T ss_dssp             CCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             ccccChhHhcc-cCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence            99999888776 99999999999999998874 68899999999999999999998889999999999999999999874


Q ss_pred             -CcCCccceeecccCCccccC
Q psy12423        281 -QKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       281 -~~~~~~L~~~~l~~~~~~~~  300 (567)
                       +..+.+|..+++..|.+.+.
T Consensus       174 ~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          174 AFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTCTTCCEEECCSCCBCTT
T ss_pred             HHhCCCCCCEEEeeCCceeCC
Confidence             45788898888888887654

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.80  E-value=5e-19  Score=176.71  Aligned_cols=172  Identities=23%  Similarity=0.333  Sum_probs=126.5

Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS  159 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~  159 (567)
                      +++|+.|++++|.+.....+..+++|++|++++|.++.++ +..+                    ++|+.|++++|.++.
T Consensus        45 l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~~~l~~l--------------------~~L~~L~l~~n~l~~  104 (291)
T 1h6t_A           45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANL--------------------KNLGWLFLDENKVKD  104 (291)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTC--------------------TTCCEEECCSSCCCC
T ss_pred             cCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCCcccccC--------------------CCCCEEECCCCcCCC
Confidence            4455555555555554444555555555555555555442 3444                    445555555555555


Q ss_pred             ccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCC
Q psy12423        160 LIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS  239 (567)
Q Consensus       160 ~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  239 (567)
                      ++....+++|++|++++|.++.++ .+..+++|+.|++++|.++.++ . +.. +++|+.|+|++|.++.++. +..+++
T Consensus       105 ~~~l~~l~~L~~L~L~~n~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~-l~~-l~~L~~L~L~~N~l~~~~~-l~~l~~  179 (291)
T 1h6t_A          105 LSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-V-LSR-LTKLDTLSLEDNQISDIVP-LAGLTK  179 (291)
T ss_dssp             GGGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCG-G-GGG-CTTCSEEECCSSCCCCCGG-GTTCTT
T ss_pred             ChhhccCCCCCEEECCCCcCCCCh-hhcCCCCCCEEEccCCcCCcch-h-hcc-CCCCCEEEccCCccccchh-hcCCCc
Confidence            444333778999999999999875 5788999999999999999883 3 333 8999999999999999877 889999


Q ss_pred             CcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       240 L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      |+.|+|++|.|+.++.  +..+++|+.|++++|+++..|.
T Consensus       180 L~~L~L~~N~i~~l~~--l~~l~~L~~L~l~~n~i~~~~~  217 (291)
T 1h6t_A          180 LQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI  217 (291)
T ss_dssp             CCEEECCSSCCCBCGG--GTTCTTCSEEEEEEEEEECCCE
T ss_pred             cCEEECCCCcCCCChh--hccCCCCCEEECcCCcccCCcc
Confidence            9999999999999875  6789999999999999987764

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.79  E-value=7.9e-20  Score=188.43  Aligned_cols=219  Identities=19%  Similarity=0.180  Sum_probs=172.6

Q ss_pred             CCccEEEecCCCCCCcc------ccCCCC-CccEEEccCCCCCCCC---Cccc-----ccCcEEEcccCcccceec----
Q psy12423         82 GELTSVNLRSNQLKGTI------ILGNYG-NLTTLDVSENSIESLD---LGAL-----NRLESIKCSRNQLKTLVL----  142 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~------~l~~l~-~L~~L~L~~n~l~~~~---~~~l-----~~L~~L~ls~n~l~~l~~----  142 (567)
                      ++|++|+|++|.++...      .+..++ +|++|++++|.++...   +..+     ++|++|++++|.++....    
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~  101 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELV  101 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHH
Confidence            46999999999998754      467788 8999999999998864   3333     899999999999986542    


Q ss_pred             ----CC-CCCcEEEcCCCccccccCCCC-------CCcccEEecccCCCC-----CcccccCCCc-CCcEEECcCCCCCC
Q psy12423        143 ----NG-SSLISVIAGNNKLQSLIVSPR-------PARLQHLDISYNELE-----SLPDWIDTCP-ELETIFASHNRITQ  204 (567)
Q Consensus       143 ----~~-~~L~~L~l~~n~l~~~~~~~~-------~~~L~~L~Ls~n~l~-----~lp~~l~~l~-~L~~L~Ls~N~l~~  204 (567)
                          .. ++|+.|++++|.++......+       +.+|++|+|++|.++     .++..+..++ +|++|+|++|.++.
T Consensus       102 ~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~  181 (362)
T 3goz_A          102 KTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLAS  181 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGG
T ss_pred             HHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCch
Confidence                23 799999999999988776443       359999999999998     3455566665 99999999999997


Q ss_pred             CChhhhhc---cC-CCccEEECCCCCCCC-----CchhhhC-CCCCcEEEccCCCCCCCch----hhhcCCCCCcEEEcc
Q psy12423        205 LPSQFFCR---EL-GKLHTLQLSFNRLTS-----LPSLIRQ-IASLKYLFLQSNSINILPQ----LFLQNSSKLKVLNIS  270 (567)
Q Consensus       205 l~~~~~~~---~l-~~L~~L~Ls~N~l~~-----lp~~~~~-l~~L~~L~Ls~N~l~~l~~----~~l~~l~~L~~L~Ls  270 (567)
                      .....+..   .. ++|++|+|++|.|+.     ++..+.. .++|++|+|++|.|+..+.    ..+..+++|+.|+|+
T Consensus       182 ~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~  261 (362)
T 3goz_A          182 KNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLD  261 (362)
T ss_dssp             SCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEE
T ss_pred             hhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEec
Confidence            76533221   14 599999999999997     6666665 4699999999999998776    345678999999999


Q ss_pred             CCcCCCCC--------CCCcCCccceeecccCCccccC
Q psy12423        271 KNCLKMLP--------SLQKGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       271 ~N~l~~ip--------~~~~~~~~L~~~~l~~~~~~~~  300 (567)
                      +|.+..++        ..+..+..|..+++..|.+.+.
T Consensus       262 ~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          262 YDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             cCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            99965444        3455677788888887765543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.77  E-value=2.7e-18  Score=171.40  Aligned_cols=156  Identities=24%  Similarity=0.286  Sum_probs=128.9

Q ss_pred             CCCCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423         77 EPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN  155 (567)
Q Consensus        77 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n  155 (567)
                      .+..+++|++|++++|++++...+..+++|++|++++|.++.++ +..+++|++|++++|++..+               
T Consensus        63 ~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~i~~~---------------  127 (291)
T 1h6t_A           63 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDI---------------  127 (291)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCC---------------
T ss_pred             hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCChhhccCCCCCEEECCCCcCCCC---------------
Confidence            36678999999999999998878999999999999999998864 66677777777777766543               


Q ss_pred             ccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhh
Q psy12423        156 KLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR  235 (567)
Q Consensus       156 ~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  235 (567)
                           .....+++|+.|++++|.++.+ ..+..+++|+.|++++|.++.++.  +.. +++|+.|+|++|.|+.++. +.
T Consensus       128 -----~~l~~l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~~~~--l~~-l~~L~~L~L~~N~i~~l~~-l~  197 (291)
T 1h6t_A          128 -----NGLVHLPQLESLYLGNNKITDI-TVLSRLTKLDTLSLEDNQISDIVP--LAG-LTKLQNLYLSKNHISDLRA-LA  197 (291)
T ss_dssp             -----GGGGGCTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCBCGG-GT
T ss_pred             -----hhhcCCCCCCEEEccCCcCCcc-hhhccCCCCCEEEccCCccccchh--hcC-CCccCEEECCCCcCCCChh-hc
Confidence                 2112256899999999999888 468889999999999999998876  333 8999999999999999875 88


Q ss_pred             CCCCCcEEEccCCCCCCCchhh
Q psy12423        236 QIASLKYLFLQSNSINILPQLF  257 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~l~~l~~~~  257 (567)
                      .+++|+.|++++|.++..|...
T Consensus       198 ~l~~L~~L~l~~n~i~~~~~~~  219 (291)
T 1h6t_A          198 GLKNLDVLELFSQECLNKPINH  219 (291)
T ss_dssp             TCTTCSEEEEEEEEEECCCEEC
T ss_pred             cCCCCCEEECcCCcccCCcccc
Confidence            8999999999999998877543

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.76  E-value=1.6e-18  Score=189.77  Aligned_cols=173  Identities=22%  Similarity=0.323  Sum_probs=107.9

Q ss_pred             CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccc
Q psy12423         80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQ  158 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~  158 (567)
                      .+++|+.|++++|.+.....+..+++|+.|+|++|.+..++ +..+++|+.|+|++|.+                    +
T Consensus        41 ~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l--------------------~  100 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKI--------------------K  100 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCC--------------------C
T ss_pred             cCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCC--------------------C
Confidence            34556666666666655555555666666666666665543 45555555555555554                    4


Q ss_pred             cccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCC
Q psy12423        159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIA  238 (567)
Q Consensus       159 ~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~  238 (567)
                      .++....+++|+.|+|++|.+..++ .+..+++|+.|+|++|.|+.++ . +.. +++|+.|+|++|.|+.++. +..++
T Consensus       101 ~l~~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~-l~~-l~~L~~L~Ls~N~l~~~~~-l~~l~  175 (605)
T 1m9s_A          101 DLSSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDIT-V-LSR-LTKLDTLSLEDNQISDIVP-LAGLT  175 (605)
T ss_dssp             CCTTSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEECCSSCCCCCG-G-GGS-CTTCSEEECCSSCCCCCGG-GTTCT
T ss_pred             CChhhccCCCCCEEEecCCCCCCCc-cccCCCccCEEECCCCccCCch-h-hcc-cCCCCEEECcCCcCCCchh-hccCC
Confidence            4332223566777777777777664 3666777777777777777662 2 222 6777777777777777655 66777


Q ss_pred             CCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       239 ~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      +|+.|+|++|.|+.++.  +..+++|+.|+|++|++...|.
T Consensus       176 ~L~~L~Ls~N~i~~l~~--l~~l~~L~~L~L~~N~l~~~p~  214 (605)
T 1m9s_A          176 KLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPI  214 (605)
T ss_dssp             TCCEEECCSSCCCBCGG--GTTCTTCSEEECCSEEEECCCC
T ss_pred             CCCEEECcCCCCCCChH--HccCCCCCEEEccCCcCcCCcc
Confidence            77777777777777643  4667777777777777765543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.76  E-value=1.4e-19  Score=184.29  Aligned_cols=193  Identities=18%  Similarity=0.188  Sum_probs=110.0

Q ss_pred             CCCccEEEecCCCCCCc-c--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccC-cccc--e---ecCCCCCc
Q psy12423         81 KGELTSVNLRSNQLKGT-I--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRN-QLKT--L---VLNGSSLI  148 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~-~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n-~l~~--l---~~~~~~L~  148 (567)
                      +++|++|++++|.+... .  .+..+++|++|++++|.++..   .+..+++|++|++++| .++.  +   ...+++|+
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~  171 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  171 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCC
Confidence            45677777777776643 1  456677777777777776642   2455677777777777 4553  1   23456677


Q ss_pred             EEEcCCC-ccccccCCC-C--CC-cccEEecccCC--CC--CcccccCCCcCCcEEECcCCC-CC-CCChhhhhccCCCc
Q psy12423        149 SVIAGNN-KLQSLIVSP-R--PA-RLQHLDISYNE--LE--SLPDWIDTCPELETIFASHNR-IT-QLPSQFFCRELGKL  217 (567)
Q Consensus       149 ~L~l~~n-~l~~~~~~~-~--~~-~L~~L~Ls~n~--l~--~lp~~l~~l~~L~~L~Ls~N~-l~-~l~~~~~~~~l~~L  217 (567)
                      .|++++| .+++..... +  ++ +|++|++++|.  ++  .+|..+..+++|+.|++++|. ++ ..+..+ .. +++|
T Consensus       172 ~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l-~~-l~~L  249 (336)
T 2ast_B          172 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF-FQ-LNYL  249 (336)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG-GG-CTTC
T ss_pred             EEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHH-hC-CCCC
Confidence            7777776 665432111 1  55 67777777773  33  445556666777777777776 44 233333 22 6677


Q ss_pred             cEEECCCCC-CCC-CchhhhCCCCCcEEEccCCCCCCCchhhhcCC-CCCcEEEccCCcCCCCCC
Q psy12423        218 HTLQLSFNR-LTS-LPSLIRQIASLKYLFLQSNSINILPQLFLQNS-SKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       218 ~~L~Ls~N~-l~~-lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l-~~L~~L~Ls~N~l~~ip~  279 (567)
                      ++|+|++|. +.. ....+..+++|+.|++++| ++   ...+..+ ..|..|++++|+++.+.+
T Consensus       250 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~---~~~~~~l~~~l~~L~l~~n~l~~~~~  310 (336)
T 2ast_B          250 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VP---DGTLQLLKEALPHLQINCSHFTTIAR  310 (336)
T ss_dssp             CEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SC---TTCHHHHHHHSTTSEESCCCSCCTTC
T ss_pred             CEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cC---HHHHHHHHhhCcceEEecccCccccC
Confidence            777777764 221 0113556677777777776 33   2222222 124445567777764433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.75  E-value=2.2e-17  Score=158.77  Aligned_cols=148  Identities=24%  Similarity=0.311  Sum_probs=105.4

Q ss_pred             cEEEcccCcccceecC-CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCC
Q psy12423        128 ESIKCSRNQLKTLVLN-GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRIT  203 (567)
Q Consensus       128 ~~L~ls~n~l~~l~~~-~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~  203 (567)
                      +.++++++.+..++.. .++|+.|++++|.++.+.+..+  +++|++|+|++|.|+.+|. .|..+++|+.|+|++|+|+
T Consensus        22 ~~v~c~~~~l~~ip~~~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~  101 (229)
T 3e6j_A           22 TTVDCRSKRHASVPAGIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT  101 (229)
T ss_dssp             TEEECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CEeEccCCCcCccCCCCCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC
Confidence            3344444444444321 2345555555555555544444  6778888888888887764 5677888888888888888


Q ss_pred             CCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423        204 QLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKM  276 (567)
Q Consensus       204 ~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~  276 (567)
                      .++...|.. +++|++|+|++|+|+.+|..+..+++|++|+|++|.|+.+++..|..+++|+.|+|++|++..
T Consensus       102 ~l~~~~~~~-l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c  173 (229)
T 3e6j_A          102 VLPSAVFDR-LVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC  173 (229)
T ss_dssp             CCCTTTTTT-CTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred             ccChhHhCc-chhhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence            887776655 788888888888888888877888888888888888888887777788888888888887763

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=1.7e-17  Score=158.45  Aligned_cols=146  Identities=20%  Similarity=0.338  Sum_probs=78.4

Q ss_pred             EEEcccCcccceecCC-CCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCC
Q psy12423        129 SIKCSRNQLKTLVLNG-SSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQ  204 (567)
Q Consensus       129 ~L~ls~n~l~~l~~~~-~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~  204 (567)
                      .++++++.++.++... ++++.|++++|.++.+++..+  +++|++|+|++|.++.+ |..|..+++|++|+|++|.|+.
T Consensus        15 ~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~   94 (220)
T 2v9t_B           15 IVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE   94 (220)
T ss_dssp             EEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC
T ss_pred             EEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc
Confidence            3444444444443221 234444444444444443333  45566666666666544 4455566666666666666666


Q ss_pred             CChhhhhccCCCccEEECCCCCCCCCc-hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        205 LPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       205 l~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      +|...|.. +++|++|+|++|.|+.++ ..+..+++|++|+|++|.|+.+++..|..+++|+.|+|++|++.
T Consensus        95 l~~~~f~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B           95 LPKSLFEG-LFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             CCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             cCHhHccC-CCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence            66555544 556666666666666542 34555566666666666666665555555566666666665543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.74  E-value=8.8e-18  Score=173.00  Aligned_cols=137  Identities=26%  Similarity=0.286  Sum_probs=99.4

Q ss_pred             CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEE
Q psy12423        166 PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYL  243 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L  243 (567)
                      +++|++|+|++|.|+.++ ..|..+++|++|+|++|+|+.++...|.. +++|+.|+|++|.|+.+ |..+..+++|+.|
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSD-LQALEVLLLYNNHIVVVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCC-CcCCCEEECCCCcccEECHHHhCCcccCCEE
Confidence            467778888888887765 46778888888888888888777776665 78888888888888875 4567788888888


Q ss_pred             EccCCCCCCCchhhh---cCCCCCcEEEccCCcCCCCCCC-CcCCcc--ceeecccCCccccCCcc
Q psy12423        244 FLQSNSINILPQLFL---QNSSKLKVLNISKNCLKMLPSL-QKGFYL--LNISQLRLPGFCNSDAL  303 (567)
Q Consensus       244 ~Ls~N~l~~l~~~~l---~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~--L~~~~l~~~~~~~~~~~  303 (567)
                      +|++|.|+.+|..+|   ..+++|+.|+|++|+|+.+|.. +..+..  +..+.+..|.+.|.|.+
T Consensus       142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l  207 (361)
T 2xot_A          142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCKL  207 (361)
T ss_dssp             ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHHH
T ss_pred             ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcCc
Confidence            888888888888776   5678888888888888888743 223433  24456666666655443

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=6.8e-18  Score=184.78  Aligned_cols=195  Identities=20%  Similarity=0.235  Sum_probs=135.2

Q ss_pred             CCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCccccC
Q psy12423         22 PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILG  101 (567)
Q Consensus        22 ~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~  101 (567)
                      ..+..+.+..+.+..+...  ..|+.|+.+             ....+.+... ..+..+++|+.|+|++|++.+...+.
T Consensus        21 ~~l~~l~l~~~~i~~~~~~--~~L~~L~~L-------------~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~~~~~l~   84 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDAVTQ--NELNSIDQI-------------IANNSDIKSV-QGIQYLPNVTKLFLNGNKLTDIKPLT   84 (605)
T ss_dssp             HHHHHHHTTCSCTTSEECH--HHHTTCCCC-------------BCTTCCCCCC-TTGGGCTTCCEEECTTSCCCCCGGGG
T ss_pred             HHHHHHhccCCCcccccch--hcCCCCCEE-------------ECcCCCCCCC-hHHccCCCCCEEEeeCCCCCCChhhc
Confidence            3455667777777764432  234444433             2222222222 24677899999999999999988899


Q ss_pred             CCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCC
Q psy12423        102 NYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE  180 (567)
Q Consensus       102 ~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~  180 (567)
                      .+++|+.|+|++|.+..++ +..+++|+.|+|++|.+..+.                    ....+++|+.|+|++|.++
T Consensus        85 ~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~l~--------------------~l~~l~~L~~L~Ls~N~l~  144 (605)
T 1m9s_A           85 NLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGISDIN--------------------GLVHLPQLESLYLGNNKIT  144 (605)
T ss_dssp             GCTTCCEEECCSSCCCCCTTSTTCTTCCEEECTTSCCCCCG--------------------GGGGCTTCSEEECCSSCCC
T ss_pred             cCCCCCEEECcCCCCCCChhhccCCCCCEEEecCCCCCCCc--------------------cccCCCccCEEECCCCccC
Confidence            9999999999999999874 667777877777777766532                    1112556777777777777


Q ss_pred             CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhh
Q psy12423        181 SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLF  257 (567)
Q Consensus       181 ~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~  257 (567)
                      .+ ..+..+++|+.|+|++|.|+.+++  +.. +++|+.|+|++|.|+.+| .+..+++|+.|+|++|.+...|...
T Consensus       145 ~l-~~l~~l~~L~~L~Ls~N~l~~~~~--l~~-l~~L~~L~Ls~N~i~~l~-~l~~l~~L~~L~L~~N~l~~~p~~~  216 (605)
T 1m9s_A          145 DI-TVLSRLTKLDTLSLEDNQISDIVP--LAG-LTKLQNLYLSKNHISDLR-ALAGLKNLDVLELFSQECLNKPINH  216 (605)
T ss_dssp             CC-GGGGSCTTCSEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCBCG-GGTTCTTCSEEECCSEEEECCCCCC
T ss_pred             Cc-hhhcccCCCCEEECcCCcCCCchh--hcc-CCCCCEEECcCCCCCCCh-HHccCCCCCEEEccCCcCcCCcccc
Confidence            66 456777777777777777777655  332 777777778777777774 4677777888888877777666543

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.73  E-value=5.3e-18  Score=162.03  Aligned_cols=155  Identities=23%  Similarity=0.282  Sum_probs=136.9

Q ss_pred             CcEEEcCCCccccccCCCCCCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC
Q psy12423        147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN  225 (567)
Q Consensus       147 L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N  225 (567)
                      -+.++++++.++.++.. ++++|+.|+|++|.|+.++. .|..+++|+.|+|++|.|+.+++..|.. +++|++|+|++|
T Consensus        13 ~~~v~c~~~~l~~iP~~-l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~-l~~L~~L~Ls~N   90 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTN-LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQG-LRSLNSLVLYGN   90 (220)
T ss_dssp             TTEEECTTSCCSSCCSS-CCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTT-CSSCCEEECCSS
T ss_pred             CCEEEcCCCCcCcCCCc-cCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhC-CcCCCEEECCCC
Confidence            35788999999988653 45799999999999998865 7899999999999999999887777766 999999999999


Q ss_pred             CCCCCchh-hhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccCCcc
Q psy12423        226 RLTSLPSL-IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSDAL  303 (567)
Q Consensus       226 ~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~~~  303 (567)
                      .|+.+|.. +..+++|++|+|++|.|+.+++..|..+++|+.|+|++|+|+.+|+. +..+.+|..+++..|.|.+.+.+
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l  170 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL  170 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence            99999875 68899999999999999999998899999999999999999999876 45688898899999888766544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.73  E-value=3.3e-17  Score=154.94  Aligned_cols=109  Identities=27%  Similarity=0.422  Sum_probs=60.9

Q ss_pred             CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEE
Q psy12423        166 PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYL  243 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L  243 (567)
                      +++|++|+|++|.++.+|. .+..+++|++|++++|.++.++...+.. +++|+.|+|++|.++.++.. +..+++|++|
T Consensus        75 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L  153 (208)
T 2o6s_A           75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDK-LTQLKDLRLYQNQLKSVPDGVFDRLTSLQYI  153 (208)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred             CCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhcc-CCcCCEEECCCCccceeCHHHhccCCCccEE
Confidence            4556666666666655543 3455566666666666666555554443 55666666666666655443 4555666666


Q ss_pred             EccCCCCCCCchhhhcCCCCCcEEEccCCcCC-CCCCCCc
Q psy12423        244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLK-MLPSLQK  282 (567)
Q Consensus       244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~  282 (567)
                      ++++|.+.       ..+++|+.|+++.|+++ .+|..+.
T Consensus       154 ~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ip~~~~  186 (208)
T 2o6s_A          154 WLHDNPWD-------CTCPGIRYLSEWINKHSGVVRNSAG  186 (208)
T ss_dssp             ECCSCCBC-------CCTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred             EecCCCee-------cCCCCHHHHHHHHHhCCceeeccCc
Confidence            66666443       23445555666666655 5554433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.73  E-value=1e-17  Score=172.45  Aligned_cols=169  Identities=24%  Similarity=0.289  Sum_probs=146.7

Q ss_pred             ccEEEccCCCCCCCCCcccccCcEEEcccCcccceec-----CCCCCcEEEcCCCccccccCCCC--CCcccEEecccCC
Q psy12423        106 LTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL-----NGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNE  178 (567)
Q Consensus       106 L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~-----~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~  178 (567)
                      -+.++++++.++.++..-...++.|++++|+|+.++.     .+++|+.|++++|.++.+.+..+  +++|++|+|++|.
T Consensus        20 ~~~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           20 SNILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             TTEEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             CCEEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCc
Confidence            4689999999999886666789999999999998763     67899999999999999987766  8899999999999


Q ss_pred             CCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhh----hCCCCCcEEEccCCCCCCC
Q psy12423        179 LESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLI----RQIASLKYLFLQSNSINIL  253 (567)
Q Consensus       179 l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~----~~l~~L~~L~Ls~N~l~~l  253 (567)
                      |+.++. .|..+++|+.|+|++|.|+.++...|.. +++|+.|+|++|.|+.+|..+    ..+++|+.|+|++|.|+.+
T Consensus       100 l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~-l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l  178 (361)
T 2xot_A          100 LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFED-MAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKL  178 (361)
T ss_dssp             CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCC
T ss_pred             CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCC-cccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCcc
Confidence            998864 6889999999999999999887777766 899999999999999998764    5789999999999999999


Q ss_pred             chhhhcCCCC--CcEEEccCCcCC
Q psy12423        254 PQLFLQNSSK--LKVLNISKNCLK  275 (567)
Q Consensus       254 ~~~~l~~l~~--L~~L~Ls~N~l~  275 (567)
                      |...+..++.  |+.|+|++|++.
T Consensus       179 ~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          179 PLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             CHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CHHHhhhccHhhcceEEecCCCcc
Confidence            9888888887  488999999886

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=5.8e-17  Score=154.83  Aligned_cols=109  Identities=22%  Similarity=0.346  Sum_probs=62.4

Q ss_pred             CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEE
Q psy12423        166 PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYL  243 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L  243 (567)
                      +++|++|+|++|.|+.++. .|..+++|++|+|++|.|+.++...|.. +++|++|+|++|.|+.+ |..+..+++|++|
T Consensus        56 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  134 (220)
T 2v70_A           56 LPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKG-LESLKTLMLRSNRITCVGNDSFIGLSSVRLL  134 (220)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTT-CSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred             CCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcC-CcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence            4555666666665555543 4555566666666666666555555443 55666666666666554 3445555566666


Q ss_pred             EccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        244 FLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       244 ~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      +|++|.|+.+++..|..+++|+.|+|++|++.
T Consensus       135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             ECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred             ECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence            66666666555555555566666666665554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.71  E-value=1e-17  Score=164.68  Aligned_cols=171  Identities=19%  Similarity=0.259  Sum_probs=125.5

Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS  159 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~  159 (567)
                      +.++..++++.|.++....+..+++|+.|++++|.++.++ +..+++|++|++++|+++.+                   
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~-------------------   78 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDL-------------------   78 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC-------------------
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCC-------------------
Confidence            4466777788888777666677778888888888777664 45566666666666655443                   


Q ss_pred             ccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCC
Q psy12423        160 LIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS  239 (567)
Q Consensus       160 ~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  239 (567)
                       ++...+++|++|+|++|.++.+|....  ++|+.|++++|.++.++.  +.. +++|+.|+|++|+|++++ .+..+++
T Consensus        79 -~~l~~l~~L~~L~L~~N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~--l~~-l~~L~~L~Ls~N~i~~~~-~l~~l~~  151 (263)
T 1xeu_A           79 -SPLKDLTKLEELSVNRNRLKNLNGIPS--ACLSRLFLDNNELRDTDS--LIH-LKNLEILSIRNNKLKSIV-MLGFLSK  151 (263)
T ss_dssp             -GGGTTCSSCCEEECCSSCCSCCTTCCC--SSCCEEECCSSCCSBSGG--GTT-CTTCCEEECTTSCCCBCG-GGGGCTT
T ss_pred             -hhhccCCCCCEEECCCCccCCcCcccc--CcccEEEccCCccCCChh--hcC-cccccEEECCCCcCCCCh-HHccCCC
Confidence             332225678888888888887765333  788888888888887753  333 788888888888888886 5778888


Q ss_pred             CcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       240 L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      |+.|+|++|.|+.+  ..+..+++|+.|++++|+++..|.
T Consensus       152 L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~  189 (263)
T 1xeu_A          152 LEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPV  189 (263)
T ss_dssp             CCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred             CCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence            88888888888887  346788888888888888887764

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=5e-17  Score=152.43  Aligned_cols=152  Identities=15%  Similarity=0.170  Sum_probs=111.2

Q ss_pred             cCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCCCCcccEEecccCC
Q psy12423        100 LGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE  178 (567)
Q Consensus       100 l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~  178 (567)
                      ...+++|+.|++++|.++.++ +..+++|++|++++|.+.                    .+.....+++|++|++++|.
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~--------------------~~~~l~~l~~L~~L~l~~n~   99 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHAT--------------------NYNPISGLSNLERLRIMGKD   99 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCS--------------------CCGGGTTCTTCCEEEEECTT
T ss_pred             hhhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCC--------------------cchhhhcCCCCCEEEeECCc
Confidence            345667777777777777643 455566666666655443                    33322236788888888888


Q ss_pred             CCC-cccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC-CCCCchhhhCCCCCcEEEccCCCCCCCchh
Q psy12423        179 LES-LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR-LTSLPSLIRQIASLKYLFLQSNSINILPQL  256 (567)
Q Consensus       179 l~~-lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~  256 (567)
                      ++. .|..+..+++|++|++++|.++......+.. +++|++|+|++|. ++.+| .+..+++|+.|++++|.|+.++  
T Consensus       100 l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~-l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~--  175 (197)
T 4ezg_A          100 VTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT-LPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYR--  175 (197)
T ss_dssp             CBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTT-CSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCCCT--
T ss_pred             cCcccChhhcCCCCCCEEEecCCccCcHhHHHHhh-CCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcChH--
Confidence            885 5677888899999999999988644444444 8899999999997 88887 5788899999999999998887  


Q ss_pred             hhcCCCCCcEEEccCCcCC
Q psy12423        257 FLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       257 ~l~~l~~L~~L~Ls~N~l~  275 (567)
                      .+..+++|+.|++++|+|.
T Consensus       176 ~l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          176 GIEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             TGGGCSSCCEEEECBC---
T ss_pred             HhccCCCCCEEEeeCcccC
Confidence            3578899999999999875

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=1e-16  Score=153.13  Aligned_cols=154  Identities=24%  Similarity=0.294  Sum_probs=131.8

Q ss_pred             cEEEcCCCccccccCCCCCCcccEEecccCCCCCcc--cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC
Q psy12423        148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP--DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN  225 (567)
Q Consensus       148 ~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp--~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N  225 (567)
                      +.+++++|.++.++. .++..+++|+|++|.++.++  ..|..+++|+.|+|++|.|+.++...|.. +++|++|+|++|
T Consensus        14 ~~l~~s~n~l~~iP~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~-l~~L~~L~Ls~N   91 (220)
T 2v70_A           14 TTVDCSNQKLNKIPE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEG-ASGVNEILLTSN   91 (220)
T ss_dssp             TEEECCSSCCSSCCS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSS
T ss_pred             CEeEeCCCCcccCcc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCC-CCCCCEEECCCC
Confidence            466777777776643 33567899999999999874  35889999999999999999999877766 999999999999


Q ss_pred             CCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCC-CCCCcCCccceeecccCCccccCCcc
Q psy12423        226 RLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML-PSLQKGFYLLNISQLRLPGFCNSDAL  303 (567)
Q Consensus       226 ~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i-p~~~~~~~~L~~~~l~~~~~~~~~~~  303 (567)
                      .|+.++. .+..+++|++|+|++|.|+.+++..|..+++|+.|+|++|+|+.+ |..+..+.+|..+++..|.+.+.+.+
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  171 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCYL  171 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGGG
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCch
Confidence            9999776 589999999999999999999888889999999999999999988 55666788999999998888766443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.70  E-value=2.5e-17  Score=161.86  Aligned_cols=155  Identities=23%  Similarity=0.295  Sum_probs=128.5

Q ss_pred             CCCCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423         77 EPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN  155 (567)
Q Consensus        77 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n  155 (567)
                      .+..+++|+.|++++|.++....+..+++|++|++++|.++.++ +..+++|++|++++|+++.++              
T Consensus        36 ~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~N~l~~l~--------------  101 (263)
T 1xeu_A           36 SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNRNRLKNLN--------------  101 (263)
T ss_dssp             CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSCCSCCT--------------
T ss_pred             chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCCCccCCcC--------------
Confidence            34567899999999999998778889999999999999999875 777788888888887776543              


Q ss_pred             ccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhh
Q psy12423        156 KLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR  235 (567)
Q Consensus       156 ~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  235 (567)
                            .... ++|+.|++++|.++.++ .+..+++|+.|++++|+++.++.  +.. +++|+.|+|++|.++++ ..+.
T Consensus       102 ------~~~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~~~~--l~~-l~~L~~L~L~~N~i~~~-~~l~  169 (263)
T 1xeu_A          102 ------GIPS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLKSIVM--LGF-LSKLEVLDLHGNEITNT-GGLT  169 (263)
T ss_dssp             ------TCCC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCCBCGG--GGG-CTTCCEEECTTSCCCBC-TTST
T ss_pred             ------cccc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCCCChH--Hcc-CCCCCEEECCCCcCcch-HHhc
Confidence                  1112 57899999999998876 48889999999999999998862  333 89999999999999988 6688


Q ss_pred             CCCCCcEEEccCCCCCCCchhh
Q psy12423        236 QIASLKYLFLQSNSINILPQLF  257 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~l~~l~~~~  257 (567)
                      .+++|+.|++++|.++..|...
T Consensus       170 ~l~~L~~L~l~~N~~~~~~~~~  191 (263)
T 1xeu_A          170 RLKKVNWIDLTGQKCVNEPVKY  191 (263)
T ss_dssp             TCCCCCEEEEEEEEEECCCEEC
T ss_pred             cCCCCCEEeCCCCcccCCcccc
Confidence            8999999999999998877643

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.69  E-value=4.1e-16  Score=147.38  Aligned_cols=146  Identities=24%  Similarity=0.322  Sum_probs=109.6

Q ss_pred             EEEcccCcccceecC-CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCC
Q psy12423        129 SIKCSRNQLKTLVLN-GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQ  204 (567)
Q Consensus       129 ~L~ls~n~l~~l~~~-~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~  204 (567)
                      .++++++.++.++.. .++|+.|++++|.++.++...+  +++|++|++++|.++.+|. .|..+++|++|+|++|.++.
T Consensus        11 ~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~   90 (208)
T 2o6s_A           11 TVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS   90 (208)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC
T ss_pred             EEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCc
Confidence            344444444444322 2345555555555555555443  6788888898888888765 56788899999999999988


Q ss_pred             CChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        205 LPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       205 l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      ++...+.. +++|++|+|++|.|+.++.. +..+++|++|+|++|.|+.+++..+..+++|+.|++++|++.
T Consensus        91 ~~~~~~~~-l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  161 (208)
T 2o6s_A           91 LPNGVFDK-LTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD  161 (208)
T ss_dssp             CCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCHhHhcC-ccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee
Confidence            88877655 88899999999988887764 678889999999999999888887888889999999999776

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.69  E-value=4.3e-16  Score=149.72  Aligned_cols=154  Identities=26%  Similarity=0.327  Sum_probs=136.1

Q ss_pred             CCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECC
Q psy12423        145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS  223 (567)
Q Consensus       145 ~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls  223 (567)
                      ++.+.++++++.++.++.. ++++|++|+|++|.++.+ |..|..+++|+.|+|++|.|+.++...|.. +++|+.|+|+
T Consensus        19 Cs~~~v~c~~~~l~~ip~~-~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~-l~~L~~L~Ls   96 (229)
T 3e6j_A           19 CSGTTVDCRSKRHASVPAG-IPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDS-LTQLTVLDLG   96 (229)
T ss_dssp             EETTEEECTTSCCSSCCSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECC
T ss_pred             EeCCEeEccCCCcCccCCC-CCCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhccc-CCCcCEEECC
Confidence            4567899999999988753 468999999999999987 668999999999999999999999888776 9999999999


Q ss_pred             CCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccCC
Q psy12423        224 FNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSD  301 (567)
Q Consensus       224 ~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~  301 (567)
                      +|.|+.++. .+..+++|++|+|++|.|+.+|..+ ..+++|+.|+|++|+|+.+|.. +..+.+|..+++..|.+.+.+
T Consensus        97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  175 (229)
T 3e6j_A           97 TNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGI-ERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC  175 (229)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCCSCCTTG-GGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred             CCcCCccChhHhCcchhhCeEeccCCcccccCccc-ccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence            999999876 4689999999999999999998875 7899999999999999999975 457888998888888887654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.69  E-value=1e-19  Score=198.00  Aligned_cols=109  Identities=24%  Similarity=0.288  Sum_probs=74.2

Q ss_pred             cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccC
Q psy12423        168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS  247 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~  247 (567)
                      .|+.|+|++|.|+.+|. +..+++|+.|+|++|.|+.+|..+..  +++|+.|+|++|.|+++| .+..+++|+.|+|++
T Consensus       442 ~L~~L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~--l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls~  517 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDNALENVD-GVANLPRLQELLLCN  517 (567)
T ss_dssp             TCSEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGG--CTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCS
T ss_pred             CceEEEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhc--CCCCCEEECCCCCCCCCc-ccCCCCCCcEEECCC
Confidence            36667777777776665 66677777777777777777665443  677777777777777766 566777777777777


Q ss_pred             CCCCCCc-hhhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423        248 NSINILP-QLFLQNSSKLKVLNISKNCLKMLPSL  280 (567)
Q Consensus       248 N~l~~l~-~~~l~~l~~L~~L~Ls~N~l~~ip~~  280 (567)
                      |.|+.++ +..+..+++|+.|+|++|+|+.+|+.
T Consensus       518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~  551 (567)
T 1dce_A          518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI  551 (567)
T ss_dssp             SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred             CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence            7777664 44456677777777777777766654

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.69  E-value=1.4e-17  Score=169.40  Aligned_cols=237  Identities=17%  Similarity=0.151  Sum_probs=157.7

Q ss_pred             cEEEccCCCCCcCCccCCCC--CCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCccc--ccCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSF--PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIV--ERRE   77 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l--~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~--~~~~   77 (567)
                      +.|+++++.+.  |..+..+  ++++.|++++|.+...+..++ .++.|+.+             +...+.+..  .+..
T Consensus        50 ~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~-~~~~L~~L-------------~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           50 QTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHF-SPFRVQHM-------------DLSNSVIEVSTLHGI  113 (336)
T ss_dssp             SEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCC-CCBCCCEE-------------ECTTCEECHHHHHHH
T ss_pred             eeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhc-cCCCCCEE-------------EccCCCcCHHHHHHH
Confidence            45666666554  3334444  566666666666665444333 34444333             111111110  1123


Q ss_pred             CCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCC-CCCC--CC--CcccccCcEEEcccC-cccce-----ecCC
Q psy12423         78 PEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSEN-SIES--LD--LGALNRLESIKCSRN-QLKTL-----VLNG  144 (567)
Q Consensus        78 ~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~--~~--~~~l~~L~~L~ls~n-~l~~l-----~~~~  144 (567)
                      +..+++|++|+|++|.+++..  .+..+++|++|++++| .++.  ++  +..+++|++|++++| .++..     ...+
T Consensus       114 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l  193 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV  193 (336)
T ss_dssp             HTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHS
T ss_pred             HhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhc
Confidence            356789999999999987543  6788999999999999 6775  22  567899999999999 88753     2457


Q ss_pred             C-CCcEEEcCCCc--ccc--ccCCCC-CCcccEEecccCC-CC-CcccccCCCcCCcEEECcCCC-CCCCChhhhhccCC
Q psy12423        145 S-SLISVIAGNNK--LQS--LIVSPR-PARLQHLDISYNE-LE-SLPDWIDTCPELETIFASHNR-ITQLPSQFFCRELG  215 (567)
Q Consensus       145 ~-~L~~L~l~~n~--l~~--~~~~~~-~~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~~l~  215 (567)
                      + +|+.|++++|.  ++.  ++.... +++|++|++++|. ++ ..+..+..+++|++|++++|. +.......+.. ++
T Consensus       194 ~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~-~~  272 (336)
T 2ast_B          194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IP  272 (336)
T ss_dssp             CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CT
T ss_pred             ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhc-CC
Confidence            7 99999999994  442  221111 7899999999999 65 556788899999999999996 33211113443 89


Q ss_pred             CccEEECCCCCCCCCchhhhCC-CCCcEEEccCCCCCCCchhhh
Q psy12423        216 KLHTLQLSFNRLTSLPSLIRQI-ASLKYLFLQSNSINILPQLFL  258 (567)
Q Consensus       216 ~L~~L~Ls~N~l~~lp~~~~~l-~~L~~L~Ls~N~l~~l~~~~l  258 (567)
                      +|+.|++++| ++.  ..+..+ ..|..|++++|.++++.+..+
T Consensus       273 ~L~~L~l~~~-i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~  313 (336)
T 2ast_B          273 TLKTLQVFGI-VPD--GTLQLLKEALPHLQINCSHFTTIARPTI  313 (336)
T ss_dssp             TCCEEECTTS-SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSC
T ss_pred             CCCEEeccCc-cCH--HHHHHHHhhCcceEEecccCccccCCcc
Confidence            9999999999 443  122222 235666689999997766544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.68  E-value=1.6e-19  Score=196.58  Aligned_cols=188  Identities=20%  Similarity=0.178  Sum_probs=129.9

Q ss_pred             CCCCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCC-------------CCCC---CCcccccCcEEE-cccCcccce
Q psy12423         79 EVKGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENS-------------IESL---DLGALNRLESIK-CSRNQLKTL  140 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~-------------l~~~---~~~~l~~L~~L~-ls~n~l~~l  140 (567)
                      ..+++|+.|+|++|+++..+ .++.+++|+.|++++|.             +...   .++.+++|+.|+ ++.|.+..+
T Consensus       346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~~L  425 (567)
T 1dce_A          346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL  425 (567)
T ss_dssp             STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred             ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccchh
Confidence            45667788888888776554 56777778888776553             1211   144556666666 444433222


Q ss_pred             e-----------cCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhh
Q psy12423        141 V-----------LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQF  209 (567)
Q Consensus       141 ~-----------~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~  209 (567)
                      .           .....|+.|++++|.+++++....+++|+.|+|++|.|+.+|..+..+++|+.|+|++|.|+.+| .+
T Consensus       426 ~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp-~l  504 (567)
T 1dce_A          426 RSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVD-GV  504 (567)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCG-GG
T ss_pred             hhhhhhcccccccCccCceEEEecCCCCCCCcCccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCCCc-cc
Confidence            1           01235778888888888776522277888888888888888888888888888888888888877 33


Q ss_pred             hhccCCCccEEECCCCCCCCC--chhhhCCCCCcEEEccCCCCCCCchh---hhcCCCCCcEEEc
Q psy12423        210 FCRELGKLHTLQLSFNRLTSL--PSLIRQIASLKYLFLQSNSINILPQL---FLQNSSKLKVLNI  269 (567)
Q Consensus       210 ~~~~l~~L~~L~Ls~N~l~~l--p~~~~~l~~L~~L~Ls~N~l~~l~~~---~l~~l~~L~~L~L  269 (567)
                      . . +++|+.|+|++|.|+++  |..+..+++|+.|+|++|.|+.+|+.   ++..+++|+.|++
T Consensus       505 ~-~-l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          505 A-N-LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             T-T-CSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             C-C-CCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence            3 2 78888888888888876  77788888888888888888877653   2345778887764

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.68  E-value=7e-18  Score=185.15  Aligned_cols=195  Identities=15%  Similarity=0.164  Sum_probs=90.9

Q ss_pred             CCCCCccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccc-----eecCCCCCc
Q psy12423         79 EVKGELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKT-----LVLNGSSLI  148 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~-----l~~~~~~L~  148 (567)
                      ..+++|+.|+++++...... .+..+++|++|++++|.++...    +..+++|++|+++ +.+..     +...+++|+
T Consensus       267 ~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~  345 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLK  345 (592)
T ss_dssp             CCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCC
T ss_pred             hccccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCC
Confidence            44455666666554333322 3445566666666666654321    2455666666665 22221     112345566


Q ss_pred             EEEcC-----------CCccccccCCCC---CCcccEEecccCCCCC-cccccCC-CcCCcEEECc----CCCCCCCChh
Q psy12423        149 SVIAG-----------NNKLQSLIVSPR---PARLQHLDISYNELES-LPDWIDT-CPELETIFAS----HNRITQLPSQ  208 (567)
Q Consensus       149 ~L~l~-----------~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~-lp~~l~~-l~~L~~L~Ls----~N~l~~l~~~  208 (567)
                      .|+++           .+.++......+   +++|++|+++.|.++. .+..+.. +++|+.|+++    .|.++..|..
T Consensus       346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~  425 (592)
T 3ogk_B          346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD  425 (592)
T ss_dssp             EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred             EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence            66665           234433222111   4556666665555552 1222322 5556666664    4455543321


Q ss_pred             -----hhhccCCCccEEECCCCC--CCC--CchhhhCCCCCcEEEccCCCCCCC-chhhhcCCCCCcEEEccCCcCC
Q psy12423        209 -----FFCRELGKLHTLQLSFNR--LTS--LPSLIRQIASLKYLFLQSNSINIL-PQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       209 -----~~~~~l~~L~~L~Ls~N~--l~~--lp~~~~~l~~L~~L~Ls~N~l~~l-~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                           ++.. +++|++|+|++|.  ++.  +......+++|++|+|++|.++.. .+.++..+++|+.|+|++|+|+
T Consensus       426 ~~~~~~~~~-~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~  501 (592)
T 3ogk_B          426 NGVRSLLIG-CKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFS  501 (592)
T ss_dssp             HHHHHHHHH-CTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCB
T ss_pred             HHHHHHHHh-CCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCc
Confidence                 1222 5555555554322  332  111123355555555555555531 1223345555555555555544

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.67  E-value=9.9e-18  Score=183.95  Aligned_cols=290  Identities=12%  Similarity=0.061  Sum_probs=197.4

Q ss_pred             CcEEEccCCCCCc-----CCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchh--------------hc
Q psy12423          1 LQEFRVDRNDLTE-----FPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEE--------------RE   61 (567)
Q Consensus         1 L~~L~Ls~n~l~~-----lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~--------------~~   61 (567)
                      |++|+|++|.++.     ++..+.++++|++|+|++|.+..+|.. +..++.|+.+.-......              .+
T Consensus       194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L  272 (592)
T 3ogk_B          194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGF-FKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKL  272 (592)
T ss_dssp             CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHH-HHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTC
T ss_pred             ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHH-HhhhhHHHhhcccccccccchHHHHHHhhccccc
Confidence            7899999999873     344567889999999999998887744 344555554411000000              00


Q ss_pred             cccccccCCcccccCCCCCCCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCCC----CcccccCcEEEcc-
Q psy12423         62 EDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESLD----LGALNRLESIKCS-  133 (567)
Q Consensus        62 ~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls-  133 (567)
                      .............+..+..+++|++|+|++|.++...   .+..+++|+.|+++ +.+....    ...+++|++|+++ 
T Consensus       273 ~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~  351 (592)
T 3ogk_B          273 CRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIER  351 (592)
T ss_dssp             CEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEEC
T ss_pred             cccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeec
Confidence            0000001111122334456789999999999976543   36889999999999 4444321    3567899999999 


Q ss_pred             ----------cCcccce-----ecCCCCCcEEEcCCCccccccCCCC---CCcccEEecc----cCCCCCc------ccc
Q psy12423        134 ----------RNQLKTL-----VLNGSSLISVIAGNNKLQSLIVSPR---PARLQHLDIS----YNELESL------PDW  185 (567)
Q Consensus       134 ----------~n~l~~l-----~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls----~n~l~~l------p~~  185 (567)
                                .|.++..     ...+++|+.|++..|.+++.....+   +++|+.|+++    .|.++..      +..
T Consensus       352 g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~  431 (592)
T 3ogk_B          352 GADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSL  431 (592)
T ss_dssp             CCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHH
T ss_pred             CccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHH
Confidence                      3566543     2357899999998888877554443   7789999997    6677764      334


Q ss_pred             cCCCcCCcEEECcCCC--CCC-CChhhhhccCCCccEEECCCCCCCC--CchhhhCCCCCcEEEccCCCCCCC-chhhhc
Q psy12423        186 IDTCPELETIFASHNR--ITQ-LPSQFFCRELGKLHTLQLSFNRLTS--LPSLIRQIASLKYLFLQSNSINIL-PQLFLQ  259 (567)
Q Consensus       186 l~~l~~L~~L~Ls~N~--l~~-l~~~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l-~~~~l~  259 (567)
                      +..+++|+.|++++|.  ++. ....+... +++|++|+|++|.+++  ++..+..+++|++|+|++|.++.. ...+..
T Consensus       432 ~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~  510 (592)
T 3ogk_B          432 LIGCKKLRRFAFYLRQGGLTDLGLSYIGQY-SPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVT  510 (592)
T ss_dssp             HHHCTTCCEEEEECCGGGCCHHHHHHHHHS-CTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHH
T ss_pred             HHhCCCCCEEEEecCCCCccHHHHHHHHHh-CccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHH
Confidence            6678999999998643  552 22233333 8899999999999985  566778899999999999998742 333446


Q ss_pred             CCCCCcEEEccCCcCCCCCC--CCcCCccceeeccc
Q psy12423        260 NSSKLKVLNISKNCLKMLPS--LQKGFYLLNISQLR  293 (567)
Q Consensus       260 ~l~~L~~L~Ls~N~l~~ip~--~~~~~~~L~~~~l~  293 (567)
                      .+++|+.|+|++|+++...-  ....++.+.+..+.
T Consensus       511 ~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~  546 (592)
T 3ogk_B          511 KLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIP  546 (592)
T ss_dssp             HCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEEC
T ss_pred             hcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEec
Confidence            79999999999999874321  12244555554443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.66  E-value=5.9e-16  Score=145.07  Aligned_cols=150  Identities=20%  Similarity=0.253  Sum_probs=120.9

Q ss_pred             CCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCcccceecCCCCCcEEEcCCCcc
Q psy12423         79 EVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKL  157 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l  157 (567)
                      ..+++|++|++++|.++....+..+++|++|++++|.++.+ .+..+++|++|++++|.++...                
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~n~l~~~~----------------  104 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNYNPISGLSNLERLRIMGKDVTSDK----------------  104 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCCGGGTTCTTCCEEEEECTTCBGGG----------------
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcchhhhcCCCCCEEEeECCccCccc----------------
Confidence            45679999999999999767888999999999999988876 4677778888877777765421                


Q ss_pred             ccccCCCC--CCcccEEecccCCCCC-cccccCCCcCCcEEECcCCC-CCCCChhhhhccCCCccEEECCCCCCCCCchh
Q psy12423        158 QSLIVSPR--PARLQHLDISYNELES-LPDWIDTCPELETIFASHNR-ITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL  233 (567)
Q Consensus       158 ~~~~~~~~--~~~L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~  233 (567)
                          +..+  +++|++|++++|.++. .|..+..+++|++|++++|. ++.++.  +.. +++|+.|++++|.++.++ .
T Consensus       105 ----~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~~--l~~-l~~L~~L~l~~n~i~~~~-~  176 (197)
T 4ezg_A          105 ----IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP--LKT-LPELKSLNIQFDGVHDYR-G  176 (197)
T ss_dssp             ----SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCGG--GGG-CSSCCEEECTTBCCCCCT-T
T ss_pred             ----ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccHh--hcC-CCCCCEEECCCCCCcChH-H
Confidence                1112  5789999999999985 57788999999999999998 888873  333 899999999999999987 6


Q ss_pred             hhCCCCCcEEEccCCCCCC
Q psy12423        234 IRQIASLKYLFLQSNSINI  252 (567)
Q Consensus       234 ~~~l~~L~~L~Ls~N~l~~  252 (567)
                      +..+++|++|++++|+|..
T Consensus       177 l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          177 IEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             GGGCSSCCEEEECBC----
T ss_pred             hccCCCCCEEEeeCcccCC
Confidence            8889999999999998864

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=1.2e-15  Score=138.96  Aligned_cols=134  Identities=20%  Similarity=0.175  Sum_probs=112.2

Q ss_pred             CCCcEEEcCCCccc--cccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423        145 SSLISVIAGNNKLQ--SLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ  221 (567)
Q Consensus       145 ~~L~~L~l~~n~l~--~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~  221 (567)
                      ++|+.|++++|.++  .++.... +++|++|++++|.++.+ ..+..+++|++|++++|.++...+..+.. +++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEK-LPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHH-CTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhh-CCCCCEEe
Confidence            56667777777766  4433312 78999999999999988 77889999999999999999844444443 89999999


Q ss_pred             CCCCCCCCCc--hhhhCCCCCcEEEccCCCCCCCch---hhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423        222 LSFNRLTSLP--SLIRQIASLKYLFLQSNSINILPQ---LFLQNSSKLKVLNISKNCLKMLPSL  280 (567)
Q Consensus       222 Ls~N~l~~lp--~~~~~l~~L~~L~Ls~N~l~~l~~---~~l~~l~~L~~L~Ls~N~l~~ip~~  280 (567)
                      |++|.++.+|  ..+..+++|++|++++|.++.+|.   ..+..+++|+.|++++|.+..+|..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~  165 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEAPDS  165 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBCCSS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhcccc
Confidence            9999999987  678899999999999999999987   5778999999999999999999864

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.63  E-value=2.5e-15  Score=140.36  Aligned_cols=124  Identities=31%  Similarity=0.422  Sum_probs=66.5

Q ss_pred             EEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423        150 VIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS  229 (567)
Q Consensus       150 L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  229 (567)
                      +++++|.++.++.. ++++|++|+|++|.++.+|..|..+++|+.|+|++|.|+.++...|.. +++|++|+|++|.|+.
T Consensus        15 l~~~~~~l~~ip~~-~~~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~-l~~L~~L~Ls~N~l~~   92 (193)
T 2wfh_A           15 VRCSNKGLKVLPKG-IPRDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSN-MTQLLTLILSYNRLRC   92 (193)
T ss_dssp             EECTTSCCSSCCSC-CCTTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCB
T ss_pred             EEcCCCCCCcCCCC-CCCCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccC-CCCCCEEECCCCccCE
Confidence            44444444443321 234555555555555555555555555555555555555555554443 5555555555555555


Q ss_pred             Cch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        230 LPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       230 lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      ++. .+..+++|++|+|++|.|+.+|+..|..+++|+.|+|++|++.
T Consensus        93 i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  139 (193)
T 2wfh_A           93 IPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY  139 (193)
T ss_dssp             CCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred             eCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence            443 3555555555555555555555555555555555555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=9e-16  Score=155.83  Aligned_cols=89  Identities=18%  Similarity=0.231  Sum_probs=49.7

Q ss_pred             CcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCc-EEEccCCCCCCCchhhhcCCCCCcE
Q psy12423        189 CPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLK-YLFLQSNSINILPQLFLQNSSKLKV  266 (567)
Q Consensus       189 l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~-~L~Ls~N~l~~l~~~~l~~l~~L~~  266 (567)
                      +++|+.|+|++|+++.|+...|.+ +.+|+.|+|.+| ++.++. .|.++++|+ .|++.+ .++.|+...|.+|++|+.
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~-~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~  301 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQ-KKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRY  301 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhC-CCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCE
Confidence            455555555555555555555554 555555555554 444443 355555555 555555 555555555555555555


Q ss_pred             EEccCCcCCCCCCC
Q psy12423        267 LNISKNCLKMLPSL  280 (567)
Q Consensus       267 L~Ls~N~l~~ip~~  280 (567)
                      |++++|.++.|+..
T Consensus       302 l~l~~n~i~~I~~~  315 (329)
T 3sb4_A          302 VLATGDKITTLGDE  315 (329)
T ss_dssp             EEECSSCCCEECTT
T ss_pred             EEeCCCccCccchh
Confidence            55555555555543

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.58  E-value=3e-15  Score=137.59  Aligned_cols=130  Identities=22%  Similarity=0.259  Sum_probs=100.9

Q ss_pred             CCCCcEEEcCCCccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEEC
Q psy12423        144 GSSLISVIAGNNKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL  222 (567)
Q Consensus       144 ~~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L  222 (567)
                      ..+|+.|++++|.++.++.... .++|++|++++|.++.+ ..+..+++|++|++++|.|+.+|..++.. +++|++|+|
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~L   95 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQA-LPDLTELIL   95 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHH-CTTCCEEEC
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhc-CCCCCEEEC
Confidence            4556666666666665532222 34888888888888877 56788888999999999888888777555 888999999


Q ss_pred             CCCCCCCCch--hhhCCCCCcEEEccCCCCCCCchh---hhcCCCCCcEEEccCCcCC
Q psy12423        223 SFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQL---FLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       223 s~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~~---~l~~l~~L~~L~Ls~N~l~  275 (567)
                      ++|.|+.+|.  .+..+++|+.|++++|.++.+|..   ++..+++|+.||+++|.+.
T Consensus        96 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           96 TNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            9998888887  678888899999999988888775   5678888888888888765

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.58  E-value=2e-14  Score=132.01  Aligned_cols=129  Identities=27%  Similarity=0.393  Sum_probs=94.0

Q ss_pred             CcEEEcCCCccccccCCCCCCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC
Q psy12423        147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN  225 (567)
Q Consensus       147 L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N  225 (567)
                      .+.++++++.++.++. ..+++|+.|++++|.++.+|. .+..+++|++|++++|.++.++...+.. +++|++|+|++|
T Consensus         9 ~~~l~~~~~~l~~~p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~N   86 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVPT-GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDK-LTKLTILYLHEN   86 (177)
T ss_dssp             TTEEECCSSCCSSCCT-TCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTT-CTTCCEEECCSS
T ss_pred             CCEEEecCCCCccCCC-CCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccC-CCccCEEECCCC
Confidence            3455566666665542 234677888888888877754 4677788888888888888777776654 778888888888


Q ss_pred             CCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCC
Q psy12423        226 RLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKML  277 (567)
Q Consensus       226 ~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i  277 (567)
                      .|+.+|. .+..+++|++|++++|.|+.+|+..+..+++|+.|+|++|++...
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            8887665 357778888888888888888877777788888888888877643

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.57  E-value=2.6e-14  Score=133.35  Aligned_cols=130  Identities=18%  Similarity=0.282  Sum_probs=114.7

Q ss_pred             ccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccC
Q psy12423        169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQS  247 (567)
Q Consensus       169 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~  247 (567)
                      -+.+++++|.++.+|..+.  ++|++|+|++|.|+.+|..+ .. +++|+.|+|++|.|+.++. .|..+++|++|+|++
T Consensus        12 ~~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~-~~-l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           12 DTVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKEL-SN-YKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TTEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGG-GG-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHh-hc-ccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            4689999999999997553  68999999999999999544 44 9999999999999999875 689999999999999


Q ss_pred             CCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccCCc
Q psy12423        248 NSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSDA  302 (567)
Q Consensus       248 N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~~  302 (567)
                      |.|+.+++..|..+++|+.|+|++|+|+.+|.. +..+.+|..+++..|.+.+.+.
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            999999999899999999999999999999986 4478889888888888866544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.57  E-value=1.1e-14  Score=135.84  Aligned_cols=125  Identities=21%  Similarity=0.272  Sum_probs=69.1

Q ss_pred             EEEcCCCccccccCCCCCCcccEEecccCCCCCccc--ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCC
Q psy12423        149 SVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR  226 (567)
Q Consensus       149 ~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~  226 (567)
                      .+++++|.++.++. .++.+|++|++++|.++.++.  .+..+++|++|+|++|.|+.+++..+.. +++|++|+|++|+
T Consensus        12 ~l~~s~~~l~~ip~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           12 TVDCTGRGLKEIPR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLGENK   89 (192)
T ss_dssp             EEECTTSCCSSCCS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSCC
T ss_pred             EEEcCCCCcCcCcc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCC-cccCCEEECCCCc
Confidence            34444444444332 123355666666666665543  2555666666666666666554444443 5566666666666


Q ss_pred             CCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        227 LTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       227 l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      |+.++. .+..+++|++|+|++|+|+.+++..|..+++|+.|+|++|+++
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           90 IKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             CCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence            665433 3555666666666666666555555555666666666666554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.56  E-value=1.2e-14  Score=132.29  Aligned_cols=129  Identities=20%  Similarity=0.152  Sum_probs=113.1

Q ss_pred             CCcccEEecccCCCC--CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC-CchhhhCCCCCcE
Q psy12423        166 PARLQHLDISYNELE--SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIASLKY  242 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~  242 (567)
                      +++|+.|++++|.++  .+|..+..+++|+.|++++|.++.+  ..+.. +++|++|+|++|.++. +|..+..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPK-LPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCC-CSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhcc-CCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            578999999999998  8998889999999999999999988  33333 8999999999999998 7888888999999


Q ss_pred             EEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCCC----CCcCCccceeecccCCcc
Q psy12423        243 LFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLPS----LQKGFYLLNISQLRLPGF  297 (567)
Q Consensus       243 L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~----~~~~~~~L~~~~l~~~~~  297 (567)
                      |+|++|.|+.++. ..+..+++|+.|++++|+++.+|.    .+..+++|..+++..+..
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            9999999999874 567899999999999999999997    566777777777765544

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.56  E-value=1.9e-14  Score=134.18  Aligned_cols=132  Identities=23%  Similarity=0.297  Sum_probs=115.5

Q ss_pred             ccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChh-hhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEcc
Q psy12423        169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQ-FFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQ  246 (567)
Q Consensus       169 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~-~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls  246 (567)
                      .+.+++++|.++.+|..+..  +|++|++++|.|+.++.. .+.. +++|++|+|++|.|+++ |..+..+++|++|+|+
T Consensus        10 ~~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           10 GTTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGR-LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGG-CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCcccccc-CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            47899999999999986543  999999999999988874 4554 99999999999999996 6789999999999999


Q ss_pred             CCCCCCCchhhhcCCCCCcEEEccCCcCCCC-CCCCcCCccceeecccCCccccCCcc
Q psy12423        247 SNSINILPQLFLQNSSKLKVLNISKNCLKML-PSLQKGFYLLNISQLRLPGFCNSDAL  303 (567)
Q Consensus       247 ~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~i-p~~~~~~~~L~~~~l~~~~~~~~~~~  303 (567)
                      +|+|+.+++..|..+++|+.|+|++|+|+.+ |..+..+.+|..+++..|.|.+.+.+
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l  144 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHL  144 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGG
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcc
Confidence            9999999998889999999999999999966 55666788999999999888766443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.55  E-value=5.1e-16  Score=170.30  Aligned_cols=191  Identities=16%  Similarity=0.082  Sum_probs=109.2

Q ss_pred             CCCCccEEEccCCCCCCCC----CcccccCcEEEcccCcccc-----eecCCCCCcEEEcC---------CCccccccCC
Q psy12423        102 NYGNLTTLDVSENSIESLD----LGALNRLESIKCSRNQLKT-----LVLNGSSLISVIAG---------NNKLQSLIVS  163 (567)
Q Consensus       102 ~l~~L~~L~L~~n~l~~~~----~~~l~~L~~L~ls~n~l~~-----l~~~~~~L~~L~l~---------~n~l~~~~~~  163 (567)
                      .+++|++|++++|.++...    +..+++|++|++++| +..     +...+++|+.|++.         .+.++.....
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            4577888888888766432    346777888888777 332     11246777777772         3344432222


Q ss_pred             CC---CCcccEEecccCCCCCc-cccc-CCCcCCcEEECc--C----CCCCCCChh-----hhhccCCCccEEECCCCCC
Q psy12423        164 PR---PARLQHLDISYNELESL-PDWI-DTCPELETIFAS--H----NRITQLPSQ-----FFCRELGKLHTLQLSFNRL  227 (567)
Q Consensus       164 ~~---~~~L~~L~Ls~n~l~~l-p~~l-~~l~~L~~L~Ls--~----N~l~~l~~~-----~~~~~l~~L~~L~Ls~N~l  227 (567)
                      .+   +++|++|.+..|.++.. +..+ ..+++|+.|+++  +    +.++..|..     ++.. +++|+.|+|++ .+
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~-~~~L~~L~L~~-~l  443 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEH-CKDLRRLSLSG-LL  443 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHH-CTTCCEEECCS-SC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhh-CCCccEEeecC-cc
Confidence            21   56777777777777632 2223 346778888887  3    455544431     1222 67788888866 44


Q ss_pred             CC-Cchhh-hCCCCCcEEEccCCCCCCCchh-hhcCCCCCcEEEccCCcCCCC--CCCCcCCccceeecccCC
Q psy12423        228 TS-LPSLI-RQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNCLKML--PSLQKGFYLLNISQLRLP  295 (567)
Q Consensus       228 ~~-lp~~~-~~l~~L~~L~Ls~N~l~~l~~~-~l~~l~~L~~L~Ls~N~l~~i--p~~~~~~~~L~~~~l~~~  295 (567)
                      +. .+..+ ..+++|+.|+|++|.++..... +...+++|+.|+|++|+++..  +.....+++|+.+++..+
T Consensus       444 ~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~  516 (594)
T 2p1m_B          444 TDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC  516 (594)
T ss_dssp             CHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESS
T ss_pred             cHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC
Confidence            43 12223 2367788888888777643322 225577788888888877521  112223445555555443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.55  E-value=2.1e-14  Score=127.96  Aligned_cols=103  Identities=20%  Similarity=0.180  Sum_probs=55.3

Q ss_pred             CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCc--hhhhCCCCCcEE
Q psy12423        166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP--SLIRQIASLKYL  243 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp--~~~~~l~~L~~L  243 (567)
                      +++|++|++++|.++.+ ..+..+++|++|++++|.++...+..+.. +++|++|++++|.++++|  ..+..+++|++|
T Consensus        41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~-l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L  118 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEK-CPNLTHLNLSGNKIKDLSTIEPLKKLENLKSL  118 (149)
T ss_dssp             CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHH-CTTCCEEECTTSCCCSHHHHGGGGGCTTCCEE
T ss_pred             cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhh-CCCCCEEECCCCcCCChHHHHHHhhCCCCCEE
Confidence            44555555555555555 44555555555555555555522222222 555555555555555543  445555555555


Q ss_pred             EccCCCCCCCch---hhhcCCCCCcEEEcc
Q psy12423        244 FLQSNSINILPQ---LFLQNSSKLKVLNIS  270 (567)
Q Consensus       244 ~Ls~N~l~~l~~---~~l~~l~~L~~L~Ls  270 (567)
                      ++++|.++.+++   ..+..+++|+.|+++
T Consensus       119 ~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A          119 DLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             eCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555555555554   344555555555554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=1.1e-14  Score=163.05  Aligned_cols=160  Identities=21%  Similarity=0.175  Sum_probs=81.6

Q ss_pred             CCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccc---eecCCCCCcEEEcCCCccc
Q psy12423         82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKT---LVLNGSSLISVIAGNNKLQ  158 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~---l~~~~~~L~~L~l~~n~l~  158 (567)
                      +.++.|+|.+|.+....    ...|+.++|+.|.|..+.           ++.|.+..   ....+..|+.|++++|.+.
T Consensus       173 ~~~~~l~L~~n~~~~~~----~~~l~~l~Ls~~~i~~~~-----------~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~  237 (727)
T 4b8c_D          173 PLTPKIELFANGKDEAN----QALLQHKKLSQYSIDEDD-----------DIENRMVMPKDSKYDDQLWHALDLSNLQIF  237 (727)
T ss_dssp             ----------------------------------------------------------------CCCCCCEEECTTSCCS
T ss_pred             CccceEEeeCCCCCcch----hhHhhcCccCcccccCcc-----------ccccceecChhhhccCCCCcEEECCCCCCC
Confidence            45667777776665422    123444455555443321           11222211   1123455566666666666


Q ss_pred             cccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCC
Q psy12423        159 SLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI  237 (567)
Q Consensus       159 ~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l  237 (567)
                      .++...+ +++|++|+|++|.|+.+|..|..+++|++|+|++|.|+.+|..+..  +++|++|+|++|.|+.+|..+..+
T Consensus       238 ~l~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~--l~~L~~L~L~~N~l~~lp~~~~~l  315 (727)
T 4b8c_D          238 NISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGS--CFQLKYFYFFDNMVTTLPWEFGNL  315 (727)
T ss_dssp             CCCGGGGGCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGG--GTTCSEEECCSSCCCCCCSSTTSC
T ss_pred             CCChhhcCCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcC--CCCCCEEECCCCCCCccChhhhcC
Confidence            5544444 6677778888887777777777777888888888887777766544  777888888888777777777777


Q ss_pred             CCCcEEEccCCCCCCCchhhh
Q psy12423        238 ASLKYLFLQSNSINILPQLFL  258 (567)
Q Consensus       238 ~~L~~L~Ls~N~l~~l~~~~l  258 (567)
                      ++|++|+|++|.|+..++..+
T Consensus       316 ~~L~~L~L~~N~l~~~~p~~~  336 (727)
T 4b8c_D          316 CNLQFLGVEGNPLEKQFLKIL  336 (727)
T ss_dssp             TTCCCEECTTSCCCSHHHHHH
T ss_pred             CCccEEeCCCCccCCCChHHH
Confidence            788888888888776655544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.53  E-value=1.6e-14  Score=128.68  Aligned_cols=124  Identities=25%  Similarity=0.253  Sum_probs=107.3

Q ss_pred             CCcccEEecccCCCC--CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC-CchhhhCCCCCcE
Q psy12423        166 PARLQHLDISYNELE--SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIASLKY  242 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~~L~~  242 (567)
                      +++|+.|++++|.++  .+|..+..+++|+.|++++|.++.+  ..+.. +++|++|+|++|.+++ +|..+..+++|++
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~-l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~   92 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPK-LNKLKKLELSDNRVSGGLEVLAEKCPNLTH   92 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCC-CTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhc-CCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence            568999999999998  8898889999999999999999988  33333 8999999999999998 8888888999999


Q ss_pred             EEccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCCC----CCcCCccceeecc
Q psy12423        243 LFLQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLPS----LQKGFYLLNISQL  292 (567)
Q Consensus       243 L~Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~----~~~~~~~L~~~~l  292 (567)
                      |++++|.++.++. ..+..+++|+.|++++|+++.+|.    .+..+++|+.+++
T Consensus        93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l  147 (149)
T 2je0_A           93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG  147 (149)
T ss_dssp             EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred             EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence            9999999999763 567899999999999999999987    3445666666554

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.53  E-value=2.4e-15  Score=168.45  Aligned_cols=191  Identities=20%  Similarity=0.204  Sum_probs=87.1

Q ss_pred             CCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCcc-cc
Q psy12423         22 PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTI-IL  100 (567)
Q Consensus        22 ~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~l  100 (567)
                      +.++.|+|.+|.+..++..+...+ .|...                               ++..++++.|.+.... .+
T Consensus       173 ~~~~~l~L~~n~~~~~~~~~l~~l-~Ls~~-------------------------------~i~~~~~~~n~~~~~~~~~  220 (727)
T 4b8c_D          173 PLTPKIELFANGKDEANQALLQHK-KLSQY-------------------------------SIDEDDDIENRMVMPKDSK  220 (727)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CccceEEeeCCCCCcchhhHhhcC-ccCcc-------------------------------cccCccccccceecChhhh
Confidence            567888888888777665442211 11111                               3444455555554322 46


Q ss_pred             CCCCCccEEEccCCCCCCCC--CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCC-CCcccEEecccC
Q psy12423        101 GNYGNLTTLDVSENSIESLD--LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPR-PARLQHLDISYN  177 (567)
Q Consensus       101 ~~l~~L~~L~L~~n~l~~~~--~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~-~~~L~~L~Ls~n  177 (567)
                      ..+++|+.|+|++|.+..++  +..+++|++|+|++|.|+.++                    .... +++|++|+|++|
T Consensus       221 ~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~~lp--------------------~~~~~l~~L~~L~Ls~N  280 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELP--------------------AEIKNLSNLRVLDLSHN  280 (727)
T ss_dssp             -CCCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCSCCC--------------------GGGGGGTTCCEEECTTS
T ss_pred             ccCCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCcccC--------------------hhhhCCCCCCEEeCcCC
Confidence            66777777777777777654  344555555555555554332                    1111 567788888888


Q ss_pred             CCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC-CchhhhCCC-CCcEEEccCCCCCCCch
Q psy12423        178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS-LPSLIRQIA-SLKYLFLQSNSINILPQ  255 (567)
Q Consensus       178 ~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~l~-~L~~L~Ls~N~l~~l~~  255 (567)
                      .|+.+|..|..+++|++|+|++|.|+.+|..+..  +++|+.|+|++|.|++ +|..+..+. .+..|+|++|.++...+
T Consensus       281 ~l~~lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~--l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          281 RLTSLPAELGSCFQLKYFYFFDNMVTTLPWEFGN--LCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             CCSSCCSSGGGGTTCSEEECCSSCCCCCCSSTTS--CTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             cCCccChhhcCCCCCCEEECCCCCCCccChhhhc--CCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            8887887788888888888888888888776433  7788888888888876 344443321 12246777887774433


Q ss_pred             hhhcCCCCCcEEEccCC
Q psy12423        256 LFLQNSSKLKVLNISKN  272 (567)
Q Consensus       256 ~~l~~l~~L~~L~Ls~N  272 (567)
                            ..|..|++++|
T Consensus       359 ------~~l~~l~l~~n  369 (727)
T 4b8c_D          359 ------HERRFIEINTD  369 (727)
T ss_dssp             ------CC---------
T ss_pred             ------cccceeEeecc
Confidence                  24556666666

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.53  E-value=4.2e-16  Score=170.93  Aligned_cols=173  Identities=16%  Similarity=0.174  Sum_probs=112.9

Q ss_pred             ccccCcEEEcccCcccce-----ecCCCCCcEEEcCCCccccccCCCC---CCcccEEeccc---------CCCCC--cc
Q psy12423        123 ALNRLESIKCSRNQLKTL-----VLNGSSLISVIAGNNKLQSLIVSPR---PARLQHLDISY---------NELES--LP  183 (567)
Q Consensus       123 ~l~~L~~L~ls~n~l~~l-----~~~~~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~---------n~l~~--lp  183 (567)
                      .+++|++|++++|.+...     ...+++|+.|++++| ++......+   +++|++|++++         +.++.  +.
T Consensus       287 ~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          287 VCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             HHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             hhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            467899999999986642     246789999999887 443222211   67899999843         34442  22


Q ss_pred             cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECC--C----CCCCCCc------hhhhCCCCCcEEEccCCCCC
Q psy12423        184 DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS--F----NRLTSLP------SLIRQIASLKYLFLQSNSIN  251 (567)
Q Consensus       184 ~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls--~----N~l~~lp------~~~~~l~~L~~L~Ls~N~l~  251 (567)
                      .....+++|+.|.+..|.++......+...+++|+.|+|+  +    +.++..|      ..+..+++|+.|+|++ .++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~  444 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT  444 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc
Confidence            2233578999998888888843333222127899999998  4    5677543      2367788999999977 666


Q ss_pred             CCchhhhc-CCCCCcEEEccCCcCCCC--CCCCcCCccceeecccCCcc
Q psy12423        252 ILPQLFLQ-NSSKLKVLNISKNCLKML--PSLQKGFYLLNISQLRLPGF  297 (567)
Q Consensus       252 ~l~~~~l~-~l~~L~~L~Ls~N~l~~i--p~~~~~~~~L~~~~l~~~~~  297 (567)
                      ......+. .+++|+.|+|++|.++..  +....++++|+.+++..+.+
T Consensus       445 ~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~  493 (594)
T 2p1m_B          445 DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPF  493 (594)
T ss_dssp             HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSC
T ss_pred             HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCC
Confidence            43333333 488999999999988621  11112455666666666655

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.52  E-value=1.4e-13  Score=126.37  Aligned_cols=130  Identities=25%  Similarity=0.330  Sum_probs=115.2

Q ss_pred             cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEcc
Q psy12423        168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQ  246 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls  246 (567)
                      +.+.+++++|.++.+|..+  .++|+.|++++|+++.++...+.. +++|++|+|++|.++.+|.. +..+++|++|+|+
T Consensus         8 ~~~~l~~~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDK-LTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCSSCCTTC--CTTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCccCCCCC--CCCCcEEEeCCCcccEeCHHHhcC-cccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            4678999999999998644  379999999999999999887765 89999999999999998764 6899999999999


Q ss_pred             CCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecccCCccccC
Q psy12423        247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQLRLPGFCNS  300 (567)
Q Consensus       247 ~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l~~~~~~~~  300 (567)
                      +|.|+.+++..+..+++|+.|++++|+|+.+|... ..+.+|..+++..|.+.+.
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~  139 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  139 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence            99999999998899999999999999999999875 4688888888888876643

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=3.3e-14  Score=144.27  Aligned_cols=77  Identities=19%  Similarity=0.213  Sum_probs=37.0

Q ss_pred             CCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCc-EEEccCCcCCCCCCCCc-CCccceee
Q psy12423        214 LGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLK-VLNISKNCLKMLPSLQK-GFYLLNIS  290 (567)
Q Consensus       214 l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~-~L~Ls~N~l~~ip~~~~-~~~~L~~~  290 (567)
                      +++|+.|+|++|.++.+|. .|.++++|+.|+|.+| ++.|+...|.++++|+ .+++.+ .++.|++..+ ++.+|...
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            3455555555555555443 3445555555555554 5555555555555555 555554 4444443322 34444443


Q ss_pred             cc
Q psy12423        291 QL  292 (567)
Q Consensus       291 ~l  292 (567)
                      .+
T Consensus       303 ~l  304 (329)
T 3sb4_A          303 LA  304 (329)
T ss_dssp             EE
T ss_pred             Ee
Confidence            33

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.51  E-value=9.5e-15  Score=134.18  Aligned_cols=130  Identities=21%  Similarity=0.164  Sum_probs=109.0

Q ss_pred             CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEE
Q psy12423        166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLF  244 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~  244 (567)
                      +.+|+.|++++|.++.+|......++|+.|++++|.|+.++  .+.. +++|++|+|++|.|+.+|.. +..+++|++|+
T Consensus        18 ~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~~--~l~~-l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~   94 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD--GFPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTELI   94 (176)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC--CCCC-CSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCccc--cccc-CCCCCEEECCCCcccccCcchhhcCCCCCEEE
Confidence            67899999999999998764444459999999999999872  3333 89999999999999998864 48999999999


Q ss_pred             ccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCCCC----CcCCccceeecccCCccc
Q psy12423        245 LQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLPSL----QKGFYLLNISQLRLPGFC  298 (567)
Q Consensus       245 Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~~----~~~~~~L~~~~l~~~~~~  298 (567)
                      |++|.|+.+|. ..+..+++|+.|++++|+++.+|..    +..++.|..+++..+...
T Consensus        95 L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~  153 (176)
T 1a9n_A           95 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK  153 (176)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred             CCCCcCCcchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence            99999999886 4567999999999999999999975    567777777776655443

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.47  E-value=1.2e-12  Score=136.12  Aligned_cols=192  Identities=15%  Similarity=0.173  Sum_probs=141.0

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCC--cccccCcEEEcccCccccee----cCCCCCcEEEcCC
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDL--GALNRLESIKCSRNQLKTLV----LNGSSLISVIAGN  154 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~--~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~  154 (567)
                      +|+.+.+.. .++...  .|.++++|+.+++..|.++.++-  ..+.+|+.+.+..+ ++.+.    ..+.+|+.+.+..
T Consensus       158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~  235 (401)
T 4fdw_A          158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPE  235 (401)
T ss_dssp             CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCT
T ss_pred             CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCC
Confidence            466666654 444332  57777777777777777776541  12467777777633 55544    2456777777775


Q ss_pred             CccccccCCCC-CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCC-----CCChhhhhccCCCccEEECCCCCC
Q psy12423        155 NKLQSLIVSPR-PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRIT-----QLPSQFFCRELGKLHTLQLSFNRL  227 (567)
Q Consensus       155 n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~-----~l~~~~~~~~l~~L~~L~Ls~N~l  227 (567)
                      + ++.+....| ..+|+.+.+. +.++.|+ ..|..+++|+.+.+.+|.+.     .++...|.+ +++|+.+.|. +.+
T Consensus       236 ~-l~~I~~~aF~~~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~-c~~L~~l~l~-~~i  311 (401)
T 4fdw_A          236 N-VSTIGQEAFRESGITTVKLP-NGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEG-CPKLARFEIP-ESI  311 (401)
T ss_dssp             T-CCEECTTTTTTCCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTT-CTTCCEECCC-TTC
T ss_pred             C-ccCccccccccCCccEEEeC-CCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhC-CccCCeEEeC-Cce
Confidence            3 666666666 5688899884 5677775 47889999999999888776     688888887 8899999998 457


Q ss_pred             CCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc
Q psy12423        228 TSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK  282 (567)
Q Consensus       228 ~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~  282 (567)
                      +.++. .|.++++|+.+.|..| ++.|+...|.++ +|+.+++.+|.+..++...+
T Consensus       312 ~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F  365 (401)
T 4fdw_A          312 RILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVW  365 (401)
T ss_dssp             CEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSC
T ss_pred             EEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccc
Confidence            77765 6788899999999554 888998889999 99999999998888776533

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.45  E-value=3.9e-13  Score=123.14  Aligned_cols=109  Identities=22%  Similarity=0.290  Sum_probs=93.6

Q ss_pred             ccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEccC
Q psy12423        169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQS  247 (567)
Q Consensus       169 L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls~  247 (567)
                      -+.+++++|.++.+|..+.  ++|+.|+|++|.|+.+++..+.. +++|++|+|++|+|+.+|.. +..+++|++|+|++
T Consensus        14 ~~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDH-LVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SSEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CcEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcC-CcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            4678899999998887654  78999999999999887777665 88999999999999998875 57899999999999


Q ss_pred             CCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC
Q psy12423        248 NSINILPQLFLQNSSKLKVLNISKNCLKMLPSL  280 (567)
Q Consensus       248 N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~  280 (567)
                      |+|+.+|+..|..+++|+.|+|++|++...|..
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~  123 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWDCECRD  123 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCccccccc
Confidence            999999988888899999999999999877754

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.45  E-value=3.8e-13  Score=122.74  Aligned_cols=109  Identities=28%  Similarity=0.327  Sum_probs=89.9

Q ss_pred             cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEEcc
Q psy12423        168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLFLQ  246 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~Ls  246 (567)
                      ..+.+++++|.++.+|..+  .++|+.|+|++|.|+.++...|.. +++|++|+|++|+|+.+|.. +..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~-l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI--PTTTQVLYLYDNQITKLEPGVFDR-LTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTT-CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcCccCccC--CCCCcEEEcCCCcCCccChhhhcC-cccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4578888888888888655  378888999999988887776665 88899999999988887764 5788899999999


Q ss_pred             CCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        247 SNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       247 ~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      +|+|+.+++..|..+++|+.|+|++|+++..++
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            999998888878888999999999998875553

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.41  E-value=4.4e-12  Score=131.92  Aligned_cols=242  Identities=10%  Similarity=0.125  Sum_probs=187.0

Q ss_pred             CCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEE
Q psy12423         10 DLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVN   88 (567)
Q Consensus        10 ~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~   88 (567)
                      .++.|+. +|.++ +|+.+.|..+ ++.|+...|.+. .|+.+             .....-.......+..+++|+.++
T Consensus       123 ~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i-------------~lp~~l~~I~~~aF~~c~~L~~l~  186 (401)
T 4fdw_A          123 SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEI-------------VFPSTLEQLKEDIFYYCYNLKKAD  186 (401)
T ss_dssp             TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEE-------------ECCTTCCEECSSTTTTCTTCCEEE
T ss_pred             ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEE-------------EeCCCccEehHHHhhCcccCCeee
Confidence            4667764 67775 7999999876 888888887753 33332             111111122235678899999999


Q ss_pred             ecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccccee---cCCCCCcEEEcCCCccccc
Q psy12423         89 LRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLV---LNGSSLISVIAGNNKLQSL  160 (567)
Q Consensus        89 Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~l~---~~~~~L~~L~l~~n~l~~~  160 (567)
                      |..|.++...  .|. ..+|+.+.+..+ ++.+   .+..+++|+.+.+..+ ++.+.   ....+|+.+.+ .+.++.+
T Consensus       187 l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~~~L~~i~l-p~~i~~I  262 (401)
T 4fdw_A          187 LSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRESGITTVKL-PNGVTNI  262 (401)
T ss_dssp             CTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTTCCCSEEEE-ETTCCEE
T ss_pred             cCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCccccccccCCccEEEe-CCCccEE
Confidence            9999988755  455 589999999854 6665   4778889999999875 55554   23478999999 4668888


Q ss_pred             cCCCC--CCcccEEecccCCCC-----Ccc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423        161 IVSPR--PARLQHLDISYNELE-----SLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS  232 (567)
Q Consensus       161 ~~~~~--~~~L~~L~Ls~n~l~-----~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~  232 (567)
                      ....|  +.+|+.+++.+|.+.     .++ ..|..+++|+.+.|. +.++.|+...|.+ +.+|+.+.|..| ++.++.
T Consensus       263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~I~~~aF~~-c~~L~~l~lp~~-l~~I~~  339 (401)
T 4fdw_A          263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRILGQGLLGG-NRKVTQLTIPAN-VTQINF  339 (401)
T ss_dssp             CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCEECTTTTTT-CCSCCEEEECTT-CCEECT
T ss_pred             ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEEEhhhhhcC-CCCccEEEECcc-ccEEcH
Confidence            88877  899999999998775     465 589999999999999 5699999999987 899999999655 777654


Q ss_pred             -hhhCCCCCcEEEccCCCCCCCchhhhcCCC-CCcEEEccCCcCC
Q psy12423        233 -LIRQIASLKYLFLQSNSINILPQLFLQNSS-KLKVLNISKNCLK  275 (567)
Q Consensus       233 -~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~-~L~~L~Ls~N~l~  275 (567)
                       .|.++ +|+.|++.+|.+..++...|.+++ .+..|.+..+.+.
T Consensus       340 ~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          340 SAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             TSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             HhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence             67888 999999999999999988888874 7888888877654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.35  E-value=3.2e-12  Score=116.51  Aligned_cols=107  Identities=21%  Similarity=0.254  Sum_probs=96.5

Q ss_pred             CCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEc
Q psy12423        191 ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNI  269 (567)
Q Consensus       191 ~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~L  269 (567)
                      ..+.|++++|.++.+|..+    .++|++|+|++|.|+++ |..+..+++|++|+|++|+|+.+|+..|..+++|+.|+|
T Consensus        10 ~~~~l~~s~n~l~~ip~~~----~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L   85 (170)
T 3g39_A           10 SGTTVDCSGKSLASVPTGI----PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSL   85 (170)
T ss_dssp             ETTEEECTTSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEeCCCCcCccCccC----CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEEC
Confidence            4689999999999999876    57899999999999998 557899999999999999999999999999999999999


Q ss_pred             cCCcCCCCCCC-CcCCccceeecccCCccccCC
Q psy12423        270 SKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSD  301 (567)
Q Consensus       270 s~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~  301 (567)
                      ++|+|+.+|+. +..+.+|..+++..|.+.+.+
T Consensus        86 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           86 NDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            99999999986 557889999999988887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.34  E-value=4.4e-12  Score=116.08  Aligned_cols=106  Identities=20%  Similarity=0.295  Sum_probs=96.0

Q ss_pred             CcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-chhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEcc
Q psy12423        192 LETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS  270 (567)
Q Consensus       192 L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls  270 (567)
                      -+.+++++|.++.+|..+    .++|+.|+|++|.|+++ |..+..+++|++|+|++|+|+.+|+..|..+++|+.|+|+
T Consensus        14 ~~~l~~~~n~l~~iP~~~----~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI----PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC----CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCccCCCc----CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            478999999999999876    57899999999999997 5578999999999999999999999988999999999999


Q ss_pred             CCcCCCCCCC-CcCCccceeecccCCccccCC
Q psy12423        271 KNCLKMLPSL-QKGFYLLNISQLRLPGFCNSD  301 (567)
Q Consensus       271 ~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~  301 (567)
                      +|+|+.+|+. +..+.+|..+++..|.+.+.+
T Consensus        90 ~N~l~~l~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           90 DNHLKSIPRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             SSCCCCCCTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CCccceeCHHHhccccCCCEEEeCCCCccccc
Confidence            9999999987 557889999999988887654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.34  E-value=7.8e-15  Score=137.47  Aligned_cols=107  Identities=23%  Similarity=0.285  Sum_probs=65.7

Q ss_pred             CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEc
Q psy12423        166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL  245 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  245 (567)
                      +++|++|++++|.++.+| .+..+++|++|++++|.++.+|.....  +++|+.|+|++|.++.+| .+..+++|++|++
T Consensus        47 l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~--~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l  122 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAV--ADTLEELWISYNQIASLS-GIEKLVNLRVLYM  122 (198)
T ss_dssp             TTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHH--HHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred             CCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhc--CCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence            456666666666666665 555666666666666666666554332  456666666666666655 3555666666666


Q ss_pred             cCCCCCCCch-hhhcCCCCCcEEEccCCcCCC
Q psy12423        246 QSNSINILPQ-LFLQNSSKLKVLNISKNCLKM  276 (567)
Q Consensus       246 s~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~  276 (567)
                      ++|.|+.++. ..+..+++|+.|++++|+++.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            6666666554 344566666666666666653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=2.8e-14  Score=133.67  Aligned_cols=126  Identities=18%  Similarity=0.222  Sum_probs=101.0

Q ss_pred             CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423        144 GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ  221 (567)
Q Consensus       144 ~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~  221 (567)
                      +++|+.|++++|.++.++  .+  +++|++|++++|.++.+|..+..+++|++|++++|.++.+| .+ .. +++|++|+
T Consensus        47 l~~L~~L~ls~n~l~~l~--~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~-~~-l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEKIS--SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GI-EK-LVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESCCC--CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HH-HH-HHHSSEEE
T ss_pred             CCCCCEEECCCCCCcccc--ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-cc-cc-CCCCCEEE
Confidence            445566666666666644  23  78999999999999999988888899999999999999887 33 33 88999999


Q ss_pred             CCCCCCCCCch--hhhCCCCCcEEEccCCCCCCCch----------hhhcCCCCCcEEEccCCcCCC
Q psy12423        222 LSFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQ----------LFLQNSSKLKVLNISKNCLKM  276 (567)
Q Consensus       222 Ls~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~----------~~l~~l~~L~~L~Ls~N~l~~  276 (567)
                      |++|.++.++.  .+..+++|++|++++|.++..++          .++..+++|+.||  +|.++.
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~  186 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV  186 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence            99999998775  68899999999999999975543          2467899999987  777663

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.21  E-value=3.2e-11  Score=122.95  Aligned_cols=103  Identities=22%  Similarity=0.259  Sum_probs=79.6

Q ss_pred             EEecccC-CCCCcccccCCCcCCcEEECcC-CCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccC
Q psy12423        171 HLDISYN-ELESLPDWIDTCPELETIFASH-NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQS  247 (567)
Q Consensus       171 ~L~Ls~n-~l~~lp~~l~~l~~L~~L~Ls~-N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~  247 (567)
                      .++++++ .++.+|. +..+++|+.|+|++ |.|+.++...|.. +++|+.|+|++|+|++++. .|..+++|++|+|++
T Consensus        12 ~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCS-CCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhcc-ccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4577777 7888888 88888888888885 8888888776665 7888888888888887554 567788888888888


Q ss_pred             CCCCCCchhhhcCCCCCcEEEccCCcCCC
Q psy12423        248 NSINILPQLFLQNSSKLKVLNISKNCLKM  276 (567)
Q Consensus       248 N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~  276 (567)
                      |+|+.+|+..|..++ |+.|+|.+|+|..
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            888888877776555 8888888887764

>3pu9_A Protein serine/threonine phosphatase; PSI-biology, MCSG, structural genomics; HET: MSE; 1.55A {Sphaerobacter thermophilus}

Probab=99.15  E-value=8.6e-10  Score=106.39  Aligned_cols=157  Identities=17%  Similarity=0.139  Sum_probs=102.7

Q ss_pred             eeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEE
Q psy12423        304 IGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIAS  383 (567)
Q Consensus       304 ~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~  383 (567)
                      +.+-|+.+.+..+.......-..+.........+.    .....+|+.+...... ...++++.+.+.+...  .+.+++
T Consensus        42 ~~vaD~~G~G~~aa~~s~~~~~~l~~~~~~~~~~~----~~l~~~n~~l~~~~~~-~~~~T~~~~~id~~~~--~l~~~~  114 (242)
T 3pu9_A           42 AVLVDGQGSGAGAKRLSLLVAGAAVRLLNEGVRDG----AAARAAHDFLYAMRDG-KVSAALDILSVDLASR--SVLVTR  114 (242)
T ss_dssp             EEEEEESSSHHHHHHHHHHHHHHHHHHHHTTCCHH----HHHHHHHHHHHHHTTT-CCCEEEEEEEEETTTT--EEEEEE
T ss_pred             EEEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhccCC-CcEEEEEEEEEECCCC--EEEEEe
Confidence            55667666555554444433333322111111223    3444555555443322 2335555555543323  788999


Q ss_pred             ecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC------------------
Q psy12423        384 VGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS------------------  445 (567)
Q Consensus       384 ~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~------------------  445 (567)
                      +|++++|++|+|+..+++.++.   .+|...     ..+++...+.+.++|.+ +|||||||                  
T Consensus       115 aG~~~~~l~r~g~~~~l~~~~~---~lG~~~-----~~~~~~~~~~l~~Gd~l-ll~TDGl~e~~~~~~~~~g~~~l~~l  185 (242)
T 3pu9_A          115 NSEVPMLLGRNGEFEQISESGG---RIGIYR-----HTRPRVLEFPAEPGLTV-ILVSDGIIGAGGRRGQPLEFLATGGR  185 (242)
T ss_dssp             ESCCCEEEEETTEEEEECCCCC---CBSSCT-----TCCCEEEEEECCTTCEE-EEECHHHHTTTTTTTCCCCHHHHHHH
T ss_pred             CCCCcEEEEECCEEEEeCCCCc---cccccC-----CCCceEEEEEeCCCCEE-EEECcCcccCCCCccccccHHHHHHH
Confidence            9999999999999999998764   455332     24677888888887655 58999998                  


Q ss_pred             ------CHHHHHHHHHHHHHHcC---CCCCcEEEEEEeCC
Q psy12423        446 ------EPVLAAKRIQDLAQSYG---SEDNLSVLVLRFQG  476 (567)
Q Consensus       446 ------~~~~~a~~l~~~a~~~g---~~dnit~~vv~~~~  476 (567)
                            +++++++.|++.|..++   ..||||++|+++..
T Consensus       186 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~DDiTvlvv~~~~  225 (242)
T 3pu9_A          186 VAGPETPAQAIADELLEAALVADDGRAGDDMTVVVLRLRN  225 (242)
T ss_dssp             HCCTTCCHHHHHHHHHHHHHHHTTTSCSSCEEEEEEEEEE
T ss_pred             HhccCCCHHHHHHHHHHHHHHhcCCCCCCCeEEEEEEEec
Confidence                  57789999999999876   67999999999873

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=3.5e-12  Score=131.32  Aligned_cols=37  Identities=16%  Similarity=0.347  Sum_probs=18.9

Q ss_pred             CCccEEEecCCCCCCcc------ccC-CCCCccEEEccCCCCCC
Q psy12423         82 GELTSVNLRSNQLKGTI------ILG-NYGNLTTLDVSENSIES  118 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~------~l~-~l~~L~~L~L~~n~l~~  118 (567)
                      +.|+.|+|++|.++...      .+. ..++|++|+|++|.++.
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~  115 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDP  115 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCH
Confidence            35666666666665422      111 22456666666665543

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.13  E-value=1.4e-11  Score=126.83  Aligned_cols=130  Identities=18%  Similarity=0.154  Sum_probs=84.2

Q ss_pred             CCCcEEEcCCCccccccCCCC---CCcccEEecccCCCCCc-----cccc-CCCcCCcEEECcCCCCCCCChhhh----h
Q psy12423        145 SSLISVIAGNNKLQSLIVSPR---PARLQHLDISYNELESL-----PDWI-DTCPELETIFASHNRITQLPSQFF----C  211 (567)
Q Consensus       145 ~~L~~L~l~~n~l~~~~~~~~---~~~L~~L~Ls~n~l~~l-----p~~l-~~l~~L~~L~Ls~N~l~~l~~~~~----~  211 (567)
                      .+|+.|++++|.++......+   +.+|+.|+|++|.++..     ...+ ...++|++|+|++|.|+......+    .
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            455666666665554333222   45678888888877632     2222 346778888888888764222211    2


Q ss_pred             ccCCCccEEECCCCCCCC-----CchhhhCCCCCcEEEccCCCCCCCchh----hhcCCCCCcEEEccCCcCC
Q psy12423        212 RELGKLHTLQLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQL----FLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       212 ~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l~~~----~l~~l~~L~~L~Ls~N~l~  275 (567)
                      . .++|++|+|++|.|+.     ++..+..+++|+.|+|++|.|+.....    .+..+++|++|+|++|.|+
T Consensus       181 ~-~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          181 G-NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS  252 (372)
T ss_dssp             T-CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred             c-CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence            2 6778888888888774     345566777888888888888754332    2345678888888888876

>3t91_A Stage II sporulation protein E; SPOIIE, phosphatase, manganese binding, PP2C PH domain; HET: GL0 MAN; 2.64A {Bacillus subtilis} PDB: 3t9q_A*

Probab=99.12  E-value=3.8e-10  Score=108.94  Aligned_cols=120  Identities=18%  Similarity=0.184  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCC
Q psy12423        344 TMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDP  423 (567)
Q Consensus       344 a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p  423 (567)
                      .+..+|+.+...... +..++++.+.+.+...  +++++|+||+|+|++|+|+..+++.++   +.+|...     ..++
T Consensus        75 ~l~~~n~~l~~~~~~-~~~~T~~~~~id~~~~--~l~~~~aG~~~~~l~r~g~~~~l~~~~---~~lG~~~-----~~~~  143 (242)
T 3t91_A           75 AIKTINSILSLRTTD-EIYSTLDLSIIDLQDA--SCKFLKVGSTPSFIKRGDQVMKVQASN---LPIGIIN-----EFDV  143 (242)
T ss_dssp             HHHHHHHHHTTC-----CCCCEEEEEEETTTC--EEEEEEESCCCEEEEETTEEEECCCC--------CCC-----TTCE
T ss_pred             HHHHHHHHHHhcCCC-CeEeEEEEEEEECCCC--EEEEEcCCCCceEEEECCEEEEecCCC---ceeEecC-----CCcc
Confidence            344556655544322 3334444444442222  789999999999999999988887654   3355322     2356


Q ss_pred             ceEEEEecCCCeEEEEEcCCCC-----------------------CHHHHHHHHHHHHHHcCC---CCCcEEEEEEeC
Q psy12423        424 HVTEVMLHENDHFLILANKSVS-----------------------EPVLAAKRIQDLAQSYGS---EDNLSVLVLRFQ  475 (567)
Q Consensus       424 ~v~~~~l~~~d~~lil~sDGl~-----------------------~~~~~a~~l~~~a~~~g~---~dnit~~vv~~~  475 (567)
                      +...+.+.++|. |+|||||||                       +++++++.|++.+..+++   .||||++++++.
T Consensus       144 ~~~~~~l~~GD~-lll~SDGl~e~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~DDiTvv~i~~~  220 (242)
T 3t91_A          144 EVVSEQLKAGDL-LIMMSDGIFEGPKHVENHDLWMKRKMKGLKTNDPQEIADLLMEEVIRTRSGQIEDDMTVVVVRID  220 (242)
T ss_dssp             EEEEEECCTTCE-EEEECHHHHTCSTTCSCHHHHHHHHHHTCCCCCHHHHHHHHHHHHHHHTTSCCCSCEEEEEEEEE
T ss_pred             eEEEEEeCCCCE-EEEECCCcccCCCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCCceEEEEEEEe
Confidence            777888888765 558999999                       567789999999998874   599999999997

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.11  E-value=1.1e-09  Score=113.80  Aligned_cols=280  Identities=14%  Similarity=0.172  Sum_probs=138.0

Q ss_pred             cEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhh-ccchhhccccc--------cccCCc
Q psy12423          2 QEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEH-GIAEEREEDFE--------QDEDGI   71 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~-~~~~~~~~~~~--------~~~~~l   71 (567)
                      +++.|.. .++.|++ +|.++.+|+.++|..+ ++.++...|.+...|+..... ++.......+.        ......
T Consensus        74 ~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~~~~~  151 (394)
T 4fs7_A           74 TEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIPEGVT  151 (394)
T ss_dssp             EEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECCTTCC
T ss_pred             eEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccCcccc
Confidence            4455543 3556643 5666777777777543 556666666555544432100 00000000000        000000


Q ss_pred             ccccCCCCCCCCccEEEecCCCCC-CccccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccc--ceecCCC
Q psy12423         72 IVERREPEVKGELTSVNLRSNQLK-GTIILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLK--TLVLNGS  145 (567)
Q Consensus        72 ~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~--~l~~~~~  145 (567)
                      ......+..+.+|+.+.+..+... +...|.++.+|+.+.+..+ ++.+   .+..+..|+.+.+..+...  .......
T Consensus       152 ~i~~~aF~~c~~L~~i~l~~~~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~  230 (394)
T 4fs7_A          152 VIGDEAFATCESLEYVSLPDSMETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKT  230 (394)
T ss_dssp             EECTTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTC
T ss_pred             ccchhhhcccCCCcEEecCCccceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccC
Confidence            011233445555666665443211 0114555555665555443 2222   2444555555554433211  1112335


Q ss_pred             CCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECC
Q psy12423        146 SLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLS  223 (567)
Q Consensus       146 ~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls  223 (567)
                      +|+.+.+.. .++.+....+  +..|+.+.+..+...--...|..+..++.+.+..+.   ++...|.. +.+|+.+.+.
T Consensus       231 ~l~~i~ip~-~~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~-~~~L~~i~l~  305 (394)
T 4fs7_A          231 GVKNIIIPD-SFTELGKSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIYGSVI---VPEKTFYG-CSSLTEVKLL  305 (394)
T ss_dssp             CCCEEEECT-TCCEECSSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEECSSE---ECTTTTTT-CTTCCEEEEC
T ss_pred             CCceEEECC-CceecccccccccccceeEEcCCCcceeeccccccccccceeccCcee---eccccccc-cccccccccc
Confidence            566665543 2333433333  566777777655332122345566666666554433   34444444 6677777775


Q ss_pred             CCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc-CCccceeecc
Q psy12423        224 FNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK-GFYLLNISQL  292 (567)
Q Consensus       224 ~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~-~~~~L~~~~l  292 (567)
                      .+ ++.++. .|.++.+|+.++|.. .++.|+...|.++.+|+.+++..| ++.|+...+ ++.+|.-..+
T Consensus       306 ~~-i~~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          306 DS-VKFIGEEAFESCTSLVSIDLPY-LVEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             TT-CCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred             cc-cceechhhhcCCCCCCEEEeCC-cccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence            43 555543 466777777777754 377777777777777777777665 666665433 4444544333

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=1.9e-10  Score=117.22  Aligned_cols=107  Identities=18%  Similarity=0.137  Sum_probs=92.7

Q ss_pred             cEEECcCC-CCCCCChhhhhccCCCccEEECCC-CCCCCCc-hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEc
Q psy12423        193 ETIFASHN-RITQLPSQFFCRELGKLHTLQLSF-NRLTSLP-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNI  269 (567)
Q Consensus       193 ~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~-N~l~~lp-~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~L  269 (567)
                      ..++++++ .|+.+|. +. . +.+|+.|+|++ |.|+.+| ..|..+++|+.|+|++|+|+.+++..|.++++|+.|+|
T Consensus        11 ~~v~~~~~n~l~~ip~-l~-~-~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LP-G-AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SC-S-CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC-CC-C-CCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            45789998 9999999 43 3 88999999996 9999987 47899999999999999999999999999999999999


Q ss_pred             cCCcCCCCCCCCcCCccceeecccCCccccCCc
Q psy12423        270 SKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDA  302 (567)
Q Consensus       270 s~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~  302 (567)
                      ++|+|+.+|+..+....|..+.+..|.+.+.|.
T Consensus        88 ~~N~l~~~~~~~~~~~~L~~l~l~~N~~~c~c~  120 (347)
T 2ifg_A           88 SFNALESLSWKTVQGLSLQELVLSGNPLHCSCA  120 (347)
T ss_dssp             CSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGG
T ss_pred             CCCccceeCHHHcccCCceEEEeeCCCccCCCc
Confidence            999999999887754458888888887776544

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.01  E-value=1.9e-08  Score=104.33  Aligned_cols=242  Identities=16%  Similarity=0.201  Sum_probs=126.8

Q ss_pred             CCcCC-ccCCCCCCCCEEeCcCCC---CCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccE
Q psy12423         11 LTEFP-GNQDSFPRLKFLSAAQNR---ISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTS   86 (567)
Q Consensus        11 l~~lp-~~~~~l~~L~~L~Ls~n~---i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~   86 (567)
                      ++.|. .+|.++.+|+.+.+..|.   ++.++...|.+...|+.+.             ....-.......+..+.+|+.
T Consensus        75 vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~-------------~~~~~~~I~~~aF~~c~~L~~  141 (394)
T 4gt6_A           75 VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIP-------------ILDSVTEIDSEAFHHCEELDT  141 (394)
T ss_dssp             CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCG-------------GGTTCSEECTTTTTTCTTCCE
T ss_pred             eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeec-------------cCCccceehhhhhhhhccccc
Confidence            55554 357788888888887663   6667777776555554330             000001112244556677777


Q ss_pred             EEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccc---eecCCCCCcEEEcCC----
Q psy12423         87 VNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKT---LVLNGSSLISVIAGN----  154 (567)
Q Consensus        87 L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~---l~~~~~~L~~L~l~~----  154 (567)
                      +.+..+ +....  .+..+.+|+.+.+..+ ++.+.   +. ..+|+.+.+..+-..-   ....+.++.......    
T Consensus       142 i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~~~~~  218 (394)
T 4gt6_A          142 VTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTRIGTNAFSECFALSTITSDSESYP  218 (394)
T ss_dssp             EECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCEECTTTTTTCTTCCEEEECCSSSC
T ss_pred             ccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccccccchhhhccccceecccccccc
Confidence            777543 22221  5666677777766543 33221   21 2345555443221100   001111222221111    


Q ss_pred             --------------------------------CccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcC
Q psy12423        155 --------------------------------NKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASH  199 (567)
Q Consensus       155 --------------------------------n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~  199 (567)
                                                      +.++.+....|  +..|+.+.+.++. ..+. ..|..+..|+.+.+. 
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~-~~I~~~aF~~c~~L~~i~l~-  296 (394)
T 4gt6_A          219 AIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSV-VSIGTGAFMNCPALQDIEFS-  296 (394)
T ss_dssp             BSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTC-CEECTTTTTTCTTCCEEECC-
T ss_pred             cccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEeccccc-ceecCcccccccccccccCC-
Confidence                                            12233333333  4566666665432 2332 356666677777664 


Q ss_pred             CCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCc
Q psy12423        200 NRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       200 N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~  273 (567)
                      +.++.|+...|.+ +.+|+.+.|..+ ++.+.. .|.++.+|+.+.|..+ ++.|....|.+|++|+.+++.+|.
T Consensus       297 ~~i~~I~~~aF~~-c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~  368 (394)
T 4gt6_A          297 SRITELPESVFAG-CISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSR  368 (394)
T ss_dssp             TTCCEECTTTTTT-CTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCH
T ss_pred             CcccccCceeecC-CCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCce
Confidence            4566666666665 667777777543 555443 5666677777777543 666777677777777777776654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.01  E-value=2.9e-09  Score=110.49  Aligned_cols=275  Identities=13%  Similarity=0.048  Sum_probs=175.4

Q ss_pred             CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhh---------ccccccccCC
Q psy12423          1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEER---------EEDFEQDEDG   70 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~---------~~~~~~~~~~   70 (567)
                      |+.++|.++ ++.|++ +|.++.+|+.+.+..+ +..+....|.+...+......+.....         +.........
T Consensus        96 L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~  173 (394)
T 4fs7_A           96 LEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIPEGVTVIGDEAFATCESLEYVSLPDSM  173 (394)
T ss_dssp             CCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECCTTCCEECTTTTTTCTTCCEEECCTTC
T ss_pred             CcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccCccccccchhhhcccCCCcEEecCCcc
Confidence            567777654 777764 6888999988877643 444444444433222211100000000         0000111111


Q ss_pred             cccccCCCCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCccccee----cC
Q psy12423         71 IIVERREPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV----LN  143 (567)
Q Consensus        71 l~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~----~~  143 (567)
                      .......+..+.+|+.+.+..+ ++...  .+.++..|+.+.+..+....- ......+|+.+.+..+ +..+.    ..
T Consensus       174 ~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~  251 (394)
T 4fs7_A          174 ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDS-FTELGKSVFYG  251 (394)
T ss_dssp             CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTT-CCEECSSTTTT
T ss_pred             ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeehhhcccCCCceEEECCC-ceecccccccc
Confidence            1223355677889999998766 44322  678888898888776543221 2334567888887543 33332    34


Q ss_pred             CCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEE
Q psy12423        144 GSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ  221 (567)
Q Consensus       144 ~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~  221 (567)
                      +..++.+.+..+. ..+....+  +..++.+.+..+.+..  ..|..+.+|+.+.+..+ ++.|+...|.+ +.+|+.++
T Consensus       252 ~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i~~--~~F~~~~~L~~i~l~~~-i~~I~~~aF~~-c~~L~~i~  326 (394)
T 4fs7_A          252 CTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIVPE--KTFYGCSSLTEVKLLDS-VKFIGEEAFES-CTSLVSID  326 (394)
T ss_dssp             CSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEECT--TTTTTCTTCCEEEECTT-CCEECTTTTTT-CTTCCEEC
T ss_pred             cccceeEEcCCCc-ceeeccccccccccceeccCceeecc--ccccccccccccccccc-cceechhhhcC-CCCCCEEE
Confidence            6788888887664 34444444  7788888776654322  36788999999999765 88899888886 89999999


Q ss_pred             CCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccc
Q psy12423        222 LSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLL  287 (567)
Q Consensus       222 Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L  287 (567)
                      |..+ ++.++. .|.++.+|+.+.+..+ ++.|+...|.+|++|+.+++..+ ++.+...+.+..+|
T Consensus       327 lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~~~~~~F~~c~~L  390 (394)
T 4fs7_A          327 LPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LEQYRYDFEDTTKF  390 (394)
T ss_dssp             CCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GGGGGGGBCTTCEE
T ss_pred             eCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CEEhhheecCCCCC
Confidence            9754 777754 7889999999999877 99999999999999999999764 44443333344333

>3f79_A Probable two-component response regulator; adaptor, signaling protein; 2.80A {Pseudomonas aeruginosa} PDB: 3es2_A

Probab=98.79  E-value=4.9e-08  Score=94.77  Aligned_cols=121  Identities=12%  Similarity=-0.003  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEEecC-ceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCc
Q psy12423        341 MKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGE-AKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLS  419 (567)
Q Consensus       341 l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~~Gd-sr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~  419 (567)
                      ....+..+|+.+...  ..+..++++.+.+.+...  .+.++++|+ .+.|++++|+..+++.++..   +|...     
T Consensus       108 p~~~l~~ln~~l~~~--~~~~~~T~~~~~id~~~~--~l~~~~aGh~p~~~l~~~g~~~~l~~~~~~---lG~~~-----  175 (255)
T 3f79_A          108 PSEVLAHINRGLINT--KLGKHVTMLGGVIDLEKN--SLTYSIGGHLPLPVLFVEGQAGYLEGRGLP---VGLFD-----  175 (255)
T ss_dssp             HHHHHHHHHHHHBTT--BSSCCEEEEEEEEETTTT--EEEEEECSCSCCCEEEC--CEEECCC--------CCSS-----
T ss_pred             HHHHHHHHHHHHHhc--CCCCEEEEEEEEEECCCC--EEEEEeCCCCCceEEEeCCeEEEeCCCCce---EEEcC-----
Confidence            344455567766543  234556666666643323  789999999 56899999988889876543   55332     


Q ss_pred             cCCCceEEEEecCCCeEEEEEcCCCC------------------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423        420 FPDPHVTEVMLHENDHFLILANKSVS------------------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ  475 (567)
Q Consensus       420 ~~~p~v~~~~l~~~d~~lil~sDGl~------------------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~  475 (567)
                      ..+++...+.+.++| .|+|||||||                        .++.+++.++ .|...+..|||||++|+..
T Consensus       176 ~~~~~~~~~~l~~gd-~lll~TDGl~e~~~~~~~~~g~~~l~~~l~~~~~~~~~~~~~l~-~~~~~~~~DDiTvl~v~~~  253 (255)
T 3f79_A          176 DATYDDRVMELPPSF-SLSLFSDGILDVLPGATLKEKEASLPEQVAAAGGTLDGLRQVFG-LANLAEMPDDIALLVLSRN  253 (255)
T ss_dssp             CCCCCC---BCCSSE-EEEEECSCCCCCSCC---CCTTTSSHHHHHHHSCSSHHHHHHC------CCSSSCEEEEEEEEC
T ss_pred             CCceEEEEEEECCCC-EEEEECCCcCcccCCCcchhhHHHHHHHHHhcCCCHHHHHHHHH-hccCCCCCCCEEEEEEEec
Confidence            234566777788865 5568999999                        2455666665 5677889999999999864

>3zt9_A Serine phosphatase; hydrolase, signal transduction, protein protein interaction,; HET: PEG; 1.75A {Moorella thermoacetica}

Probab=98.77  E-value=2.5e-07  Score=85.75  Aligned_cols=147  Identities=14%  Similarity=0.155  Sum_probs=91.4

Q ss_pred             ceeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEE
Q psy12423        303 LIGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIA  382 (567)
Q Consensus       303 ~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a  382 (567)
                      .+.+-|+.+.+.-+.......-..+.+..  ...|.+.    ...+|+.+...     .+++++.+.+.+...  ++.++
T Consensus        33 ~~~v~Dv~GhG~~Aa~~s~~~~~~l~~~~--~~~p~~i----l~~ln~~l~~~-----~~~t~~~~~id~~~~--~l~~~   99 (193)
T 3zt9_A           33 FLAVGDGIGHGPEAARAAEIAIASMESSM--NTGLVNI----FQLCHRELRGT-----RGAVAALCRVDRRQG--LWQAA   99 (193)
T ss_dssp             EEEEEEESSSHHHHHHHHHHHHHHHHHHT--TSCHHHH----HHHHHHHHTTS-----SCEEEEEEEEETTTT--EEEEE
T ss_pred             EEEEEeCCCCCHHHHHHHHHHHHHHHHcc--cCCHHHH----HHHHHHHHhcc-----CceEEEEEEEECCCC--EEEEE
Confidence            34556666655555444444433333321  1223333    33445555432     123444444443323  78999


Q ss_pred             EecCceEEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCC--------------CHH
Q psy12423        383 SVGEAKAILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVS--------------EPV  448 (567)
Q Consensus       383 ~~Gdsr~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~--------------~~~  448 (567)
                      +.|+.+.|++|.++..++...+.   .+|..     ...+++..++++.++|.+ +|+||||+              +|+
T Consensus       100 ~aGh~~~~l~~~~~~~~l~~~~g---~lG~~-----~~~~~~~~~~~l~~gd~l-~l~sDGl~e~~~~~~~~~~~~~~~~  170 (193)
T 3zt9_A          100 IVGNIHVKILSAKGIITPLATPG---ILGYN-----YPHQLLIAKGSYQEGDLF-LIHSDGIQEGAVPLALLANYRLTAE  170 (193)
T ss_dssp             EESSCEEEEEETTEEECCCCBCC---BBTTB-----CCSSCCCEEEECCTTCEE-EEECTTSCTTCSCGGGGGCTTSCHH
T ss_pred             ecCCceEEEEcCCcEEEecCCCC---ceecc-----CCccceeEEeccCCCCEE-EEECCCCCCccChhhhhchhcCCHH
Confidence            99999999999987766543221   23321     112567778888887655 58999998              789


Q ss_pred             HHHHHHHHHHHHcCCCCCcEEEEEE
Q psy12423        449 LAAKRIQDLAQSYGSEDNLSVLVLR  473 (567)
Q Consensus       449 ~~a~~l~~~a~~~g~~dnit~~vv~  473 (567)
                      ++|+.|++.|  .+++||+||+|++
T Consensus       171 ~~a~~l~~~~--~~~~Dd~tvlv~r  193 (193)
T 3zt9_A          171 ELVRLIGEKY--GRRDDDVAVIVAR  193 (193)
T ss_dssp             HHHHHHHHHH--CCTTSCEEEEEEC
T ss_pred             HHHHHHHHHh--CcCCCCeEEEEEC
Confidence            9999999997  4689999999985

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.70  E-value=8.8e-07  Score=91.04  Aligned_cols=245  Identities=13%  Similarity=0.132  Sum_probs=114.3

Q ss_pred             CCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEE
Q psy12423         10 DLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVN   88 (567)
Q Consensus        10 ~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~   88 (567)
                      .+++|++ +|.++.+|+.++|..+ ++.|+...|.+.. |...             . ....+...........+|+.+.
T Consensus        56 ~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c~-l~~i-------------~-~~~~l~~I~~~aF~~~~L~~i~  119 (379)
T 4h09_A           56 GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADTK-LQSY-------------T-GMERVKKFGDYVFQGTDLDDFE  119 (379)
T ss_dssp             TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTCC-CCEE-------------E-ECTTCCEECTTTTTTCCCSEEE
T ss_pred             CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCCC-CceE-------------E-CCceeeEeccceeccCCccccc
Confidence            3556654 6888999999999654 7788887776542 2211             0 0011111111111223677777


Q ss_pred             ecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCccccee----------------cCCCCC
Q psy12423         89 LRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLV----------------LNGSSL  147 (567)
Q Consensus        89 Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~l~----------------~~~~~L  147 (567)
                      +..+- ....  .+.+. +|+.+.+..+ ++.+   .+..+..++.+.+..+......                .....+
T Consensus       120 lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  196 (379)
T 4h09_A          120 FPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG  196 (379)
T ss_dssp             CCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred             CCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence            76542 2111  33332 4555544332 2222   3445556666655443322111                112223


Q ss_pred             cEEEcCCCccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCC
Q psy12423        148 ISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF  224 (567)
Q Consensus       148 ~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~  224 (567)
                      ..+.+.... .......+  ..+|+.+.+..+ +..+. ..+..+..|+.+.+..+ ++.+....|.. +.+|+.+.+..
T Consensus       197 ~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~-~~~l~~i~l~~  272 (379)
T 4h09_A          197 TEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQN-CTALKTLNFYA  272 (379)
T ss_dssp             SEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTT-CTTCCEEEECC
T ss_pred             cccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccce-eehhccccccc
Confidence            333222111 11111111  344555555432 33332 24455555555555443 45555555544 55555555543


Q ss_pred             CCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        225 NRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       225 N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      + ++.++. .+.++++|+.+.+.++.++.|+...|.++.+|+.+.|..+ ++.|+.
T Consensus       273 ~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~  326 (379)
T 4h09_A          273 K-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQV  326 (379)
T ss_dssp             C-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECT
T ss_pred             c-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHH
Confidence            2 333332 3455555666666555555555555555556666555433 555544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.64  E-value=1.3e-08  Score=104.03  Aligned_cols=62  Identities=13%  Similarity=0.163  Sum_probs=30.7

Q ss_pred             CCCccEEECCCCCCCC-Cchhh---hCCCCCcEEEccCCCCCCCchhh----hcCCCCCcEEEccCCcCC
Q psy12423        214 LGKLHTLQLSFNRLTS-LPSLI---RQIASLKYLFLQSNSINILPQLF----LQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       214 l~~L~~L~Ls~N~l~~-lp~~~---~~l~~L~~L~Ls~N~l~~l~~~~----l~~l~~L~~L~Ls~N~l~  275 (567)
                      +++|+.|+|.+|.+.. .+..+   ..+++|++|+|+.|.|+......    +..+++|+.|+|++|.|+
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~  320 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS  320 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence            4566666666655542 11111   23456666666666655321111    123456666666666554

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.61  E-value=6.6e-07  Score=92.59  Aligned_cols=124  Identities=19%  Similarity=0.270  Sum_probs=89.0

Q ss_pred             CCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCccc-ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccE
Q psy12423        143 NGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLPD-WIDTCPELETIFASHNRITQLPSQFFCRELGKLHT  219 (567)
Q Consensus       143 ~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~-~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~  219 (567)
                      .+..|+.+.+..+ +..+....+  +.+|+.+.+. +.++.|+. .|.++.+|+.+.|..+ ++.|....|.+ +.+|+.
T Consensus       263 ~c~~L~~i~lp~~-~~~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~-C~~L~~  338 (394)
T 4gt6_A          263 SCAYLASVKMPDS-VVSIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAG-CEQLER  338 (394)
T ss_dssp             TCSSCCEEECCTT-CCEECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CTTCCE
T ss_pred             ecccccEEecccc-cceecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhC-CCCCCE
Confidence            3567888888654 344555555  7899999996 56777864 7889999999999864 88999999987 899999


Q ss_pred             EECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcC
Q psy12423        220 LQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL  274 (567)
Q Consensus       220 L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l  274 (567)
                      +.|..+ ++.+.. .|.++++|+.+++.++....   ..+..+.+|+.+.+..|.+
T Consensus       339 i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          339 IAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             EEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             EEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            999754 777765 78999999999999885431   3356788899988877654

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.51  E-value=3.3e-06  Score=86.72  Aligned_cols=257  Identities=12%  Similarity=0.147  Sum_probs=158.7

Q ss_pred             CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |+.+.|.. .++.|++ +|.++ +|+.+.+.. .++.++...|..- .|+.+             ... ..+........
T Consensus        71 L~~I~lp~-~v~~Ig~~aF~~c-~l~~i~~~~-~l~~I~~~aF~~~-~L~~i-------------~lp-~~~~~i~~~~F  132 (379)
T 4h09_A           71 MTKVTVAS-TVTSIGDGAFADT-KLQSYTGME-RVKKFGDYVFQGT-DLDDF-------------EFP-GATTEIGNYIF  132 (379)
T ss_dssp             CCEEEECT-TCCEECTTTTTTC-CCCEEEECT-TCCEECTTTTTTC-CCSEE-------------ECC-TTCCEECTTTT
T ss_pred             CCEEEeCC-cceEechhhhcCC-CCceEECCc-eeeEeccceeccC-Ccccc-------------cCC-Ccccccccccc
Confidence            56777764 4777764 67777 688888764 3667777666532 23222             000 00111111111


Q ss_pred             CCCCccEEEecCCCCCCc--cccCCCCCccEEEccCCCCCCC---------------CCcccccCcEEEcccCcccc---
Q psy12423         80 VKGELTSVNLRSNQLKGT--IILGNYGNLTTLDVSENSIESL---------------DLGALNRLESIKCSRNQLKT---  139 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~---------------~~~~l~~L~~L~ls~n~l~~---  139 (567)
                      ...+|+.+.+..+ ++..  ..+..+.+++.+.+..+.....               .+.....+..+.+....-..   
T Consensus       133 ~~~~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~  211 (379)
T 4h09_A          133 YNSSVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVKTVTAY  211 (379)
T ss_dssp             TTCCCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCCEECTT
T ss_pred             ccceeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccccccccccceeEEeec
Confidence            1224555555433 2221  2456667777776665433221               11222334444333221110   


Q ss_pred             eecCCCCCcEEEcCCCccccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCC
Q psy12423        140 LVLNGSSLISVIAGNNKLQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGK  216 (567)
Q Consensus       140 l~~~~~~L~~L~l~~n~l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~  216 (567)
                      ......+|+.+.+..+ +..+....+  +..|+.+.+..+ ++.+. ..|..+.+|+.+.+.. .+..++...|.+ +.+
T Consensus       212 ~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~-~i~~i~~~aF~~-c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYA-KVKTVPYLLCSG-CSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECC-CCSEECTTTTTT-CTT
T ss_pred             ccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhccccccc-cceecccccccc-ccc
Confidence            0123456777776543 455555554  778999998765 66664 4678889999999864 488888888876 899


Q ss_pred             ccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCc
Q psy12423        217 LHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQK  282 (567)
Q Consensus       217 L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~  282 (567)
                      |+.+.+.++.++.++. .|.++.+|+.+.|..+ ++.|....|.+|++|+.+.+..+ ++.|....+
T Consensus       288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF  352 (379)
T 4h09_A          288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAF  352 (379)
T ss_dssp             CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTT
T ss_pred             cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHh
Confidence            9999999888888765 6888999999999754 88999999999999999988654 666665433

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.51  E-value=5.5e-08  Score=89.55  Aligned_cols=108  Identities=14%  Similarity=0.131  Sum_probs=77.2

Q ss_pred             CCcccEEecccC-CCC-----CcccccCCCcCCcEEECcCCCCCC-----CChhhhhccCCCccEEECCCCCCCC-----
Q psy12423        166 PARLQHLDISYN-ELE-----SLPDWIDTCPELETIFASHNRITQ-----LPSQFFCRELGKLHTLQLSFNRLTS-----  229 (567)
Q Consensus       166 ~~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~Ls~N~l~~-----  229 (567)
                      .++|++|+|++| .+.     .+...+...++|++|+|++|.|..     +...+..  .++|++|+|++|.|+.     
T Consensus        35 ~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~--n~~L~~L~L~~N~i~~~g~~~  112 (185)
T 1io0_A           35 DPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV--NNTLKSLNVESNFISGSGILA  112 (185)
T ss_dssp             CTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH--CSSCCEEECCSSCCCHHHHHH
T ss_pred             CCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHh--CCCcCEEECcCCcCCHHHHHH
Confidence            457888888888 776     244566777888888888888873     2222222  5788899999888885     


Q ss_pred             CchhhhCCCCCcEEEc--cCCCCCCCc----hhhhcCCCCCcEEEccCCcCC
Q psy12423        230 LPSLIRQIASLKYLFL--QSNSINILP----QLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       230 lp~~~~~l~~L~~L~L--s~N~l~~l~----~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      +...+...++|++|+|  ++|.|+...    ...+...++|+.|+|++|.+.
T Consensus       113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence            4556677788999999  778888422    233456788999999888764

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.35  E-value=2.9e-07  Score=93.94  Aligned_cols=189  Identities=18%  Similarity=0.195  Sum_probs=115.3

Q ss_pred             CccEEEecCCCCCC-cc---------ccCCCCCccEEEccCCCCCC----------CC--CcccccCcEEEcccCc-ccc
Q psy12423         83 ELTSVNLRSNQLKG-TI---------ILGNYGNLTTLDVSENSIES----------LD--LGALNRLESIKCSRNQ-LKT  139 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~-~~---------~l~~l~~L~~L~L~~n~l~~----------~~--~~~l~~L~~L~ls~n~-l~~  139 (567)
                      .++.|.+....+.+ ..         .+..+++|+.|.+..+....          +.  +..+++|+.|.+++|. +.-
T Consensus       108 ~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l  187 (362)
T 2ra8_A          108 SLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI  187 (362)
T ss_dssp             GCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC
T ss_pred             hcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee
Confidence            56777777665442 11         23456789999887654321          10  2456788899888773 221


Q ss_pred             eecCCCCCcEEEcCCCccccccCCC----CCCcccEEeccc--CC------CCCccccc--CCCcCCcEEECcCCCCCC-
Q psy12423        140 LVLNGSSLISVIAGNNKLQSLIVSP----RPARLQHLDISY--NE------LESLPDWI--DTCPELETIFASHNRITQ-  204 (567)
Q Consensus       140 l~~~~~~L~~L~l~~n~l~~~~~~~----~~~~L~~L~Ls~--n~------l~~lp~~l--~~l~~L~~L~Ls~N~l~~-  204 (567)
                      .....++|+.|.+..+.++......    .+++|+.|+|+.  |.      +..+...+  ..+++|+.|+|.+|.+.. 
T Consensus       188 ~~~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~  267 (362)
T 2ra8_A          188 GKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNV  267 (362)
T ss_dssp             CSCBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHH
T ss_pred             ccccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchH
Confidence            1124678888888887765433211    257888888753  11      21222223  247888999988888763 


Q ss_pred             CChhhhh-ccCCCccEEECCCCCCCC-----CchhhhCCCCCcEEEccCCCCCCCchhhhcC-CCCCcEEEccCCc
Q psy12423        205 LPSQFFC-RELGKLHTLQLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQLFLQN-SSKLKVLNISKNC  273 (567)
Q Consensus       205 l~~~~~~-~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~-l~~L~~L~Ls~N~  273 (567)
                      .+..++. ..+++|++|+|+.|.|+.     ++..+..+++|+.|+|++|.|+......+.. +  ...+++++|+
T Consensus       268 ~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~al--g~~~~~~~~~  341 (362)
T 2ra8_A          268 VVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSL--PMKIDVSDSQ  341 (362)
T ss_dssp             HHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHHC--CSEEECCSBC
T ss_pred             HHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHHc--CCEEEecCCc
Confidence            2222221 126788899998888875     3344456788889999888877443333332 2  3567888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.27  E-value=2.1e-07  Score=85.64  Aligned_cols=84  Identities=12%  Similarity=0.142  Sum_probs=58.2

Q ss_pred             CCcccEEecccCCCCC-----cccccCCCcCCcEEECcCCCCCC-----CChhhhhccCCCccEEEC--CCCCCCC----
Q psy12423        166 PARLQHLDISYNELES-----LPDWIDTCPELETIFASHNRITQ-----LPSQFFCRELGKLHTLQL--SFNRLTS----  229 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~-----lp~~l~~l~~L~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~L--s~N~l~~----  229 (567)
                      .++|++|+|++|.|..     +...+...++|++|+|++|.|+.     +...+..  .++|++|+|  ++|.|+.    
T Consensus        64 ~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~--n~~L~~L~L~~~~N~i~~~g~~  141 (185)
T 1io0_A           64 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQS--NTSLIELRIDNQSQPLGNNVEM  141 (185)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGG--CSSCCEEECCCCSSCCCHHHHH
T ss_pred             CCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHh--CCCceEEEecCCCCCCCHHHHH
Confidence            3567777777777762     34455566778888888888874     2222222  567888888  7788874    


Q ss_pred             -CchhhhCCCCCcEEEccCCCCC
Q psy12423        230 -LPSLIRQIASLKYLFLQSNSIN  251 (567)
Q Consensus       230 -lp~~~~~l~~L~~L~Ls~N~l~  251 (567)
                       +...+...++|++|+|++|.|.
T Consensus       142 ~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          142 EIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHhCCCcCEEeccCCCCC
Confidence             4455667788899999888875

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.08  E-value=9.7e-07  Score=85.64  Aligned_cols=80  Identities=29%  Similarity=0.347  Sum_probs=45.5

Q ss_pred             CCCcCCcEEECcCCCCCCCCh--hhhhccCCCccEEECCCCCCCCCchhhhCCC--CCcEEEccCCCCCC-Cc------h
Q psy12423        187 DTCPELETIFASHNRITQLPS--QFFCRELGKLHTLQLSFNRLTSLPSLIRQIA--SLKYLFLQSNSINI-LP------Q  255 (567)
Q Consensus       187 ~~l~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~--~L~~L~Ls~N~l~~-l~------~  255 (567)
                      ..+++|+.|+|++|+|+.++.  ..+.. +++|+.|+|++|+|+++.. +..++  +|++|+|++|.+.. +|      .
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~-l~~L~~L~Ls~N~i~~~~~-l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSERE-LDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHH-STTCCEEECTTSCCCSGGG-GGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhh-CCCCCEEECCCCccCCchh-hhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            345667777777777665542  22222 6677777777777766522 22233  66777777776653 32      1


Q ss_pred             hhhcCCCCCcEEE
Q psy12423        256 LFLQNSSKLKVLN  268 (567)
Q Consensus       256 ~~l~~l~~L~~L~  268 (567)
                      .++..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence            2345666666654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.90  E-value=4.8e-06  Score=80.74  Aligned_cols=91  Identities=26%  Similarity=0.291  Sum_probs=66.1

Q ss_pred             cCCCcCCcE--EECcCCCCCCCChh---hhhccCCCccEEECCCCCCCCCc---hhhhCCCCCcEEEccCCCCCCCch-h
Q psy12423        186 IDTCPELET--IFASHNRITQLPSQ---FFCRELGKLHTLQLSFNRLTSLP---SLIRQIASLKYLFLQSNSINILPQ-L  256 (567)
Q Consensus       186 l~~l~~L~~--L~Ls~N~l~~l~~~---~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~Ls~N~l~~l~~-~  256 (567)
                      +...+.|..  ++++.|....++..   +... +++|+.|+|++|+|++++   ..+..+++|+.|+|++|.|+++.. .
T Consensus       137 l~~dp~L~~~~l~l~~N~~~~~~~~l~i~~~~-l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~  215 (267)
T 3rw6_A          137 LRSDPDLVAQNIDVVLNRRSCMAATLRIIEEN-IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELD  215 (267)
T ss_dssp             GGGCHHHHHTTCCCCTTSHHHHHHHHHHHHHH-CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGG
T ss_pred             cCCCcchhhcCccccCCHHHHHHHHHHHHHhh-CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhh
Confidence            333445554  66777765544331   2222 889999999999999865   566789999999999999998733 2


Q ss_pred             hhcCCCCCcEEEccCCcCC-CCC
Q psy12423        257 FLQNSSKLKVLNISKNCLK-MLP  278 (567)
Q Consensus       257 ~l~~l~~L~~L~Ls~N~l~-~ip  278 (567)
                      .+..+ +|++|+|++|++. .+|
T Consensus       216 ~l~~l-~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          216 KIKGL-KLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             GGTTS-CCSEEECTTSTTGGGCS
T ss_pred             hcccC-CcceEEccCCcCccccC
Confidence            23334 9999999999997 455

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.62  E-value=6.4e-05  Score=69.04  Aligned_cols=104  Identities=16%  Similarity=0.102  Sum_probs=57.7

Q ss_pred             CcccEEecccC-CCC-----CcccccCCCcCCcEEECcCCCCCC-----CChhhhhccCCCccEEECCCCCCCC-----C
Q psy12423        167 ARLQHLDISYN-ELE-----SLPDWIDTCPELETIFASHNRITQ-----LPSQFFCRELGKLHTLQLSFNRLTS-----L  230 (567)
Q Consensus       167 ~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~-----l~~~~~~~~l~~L~~L~Ls~N~l~~-----l  230 (567)
                      +.|+.|+|++| .|.     .+...+..-+.|+.|+|++|.|..     |...+..  -+.|+.|+|+.|.|..     +
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~--N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET--SPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH--CSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhc--CCccCeEecCCCcCCHHHHHHH
Confidence            35666666664 555     234455566677777777777762     2222222  4567777777777763     3


Q ss_pred             chhhhCCCCCcEEEccCCCC---CCC----chhhhcCCCCCcEEEccCC
Q psy12423        231 PSLIRQIASLKYLFLQSNSI---NIL----PQLFLQNSSKLKVLNISKN  272 (567)
Q Consensus       231 p~~~~~l~~L~~L~Ls~N~l---~~l----~~~~l~~l~~L~~L~Ls~N  272 (567)
                      -..+...+.|++|+|++|..   ..-    ....+...+.|+.|+++.|
T Consensus       119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence            33445556677777765433   211    1123445566677766654

>3ke6_A Protein RV1364C/MT1410; anti-sigma factor, anti-sigma factor antagonist, phosphatase serine kinase, ATPase, unknown function; 2.60A {Mycobacterium tuberculosis}

Probab=97.62  E-value=0.0014  Score=67.41  Aligned_cols=154  Identities=17%  Similarity=0.166  Sum_probs=86.8

Q ss_pred             eeeccCCCCchhhhHHhhhhHHHHHhhhhhhhhhhHHHHHHHHHHHHHHhhhcccccCceeEEEEeecCccceEEEEEEE
Q psy12423        304 IGIFDSGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIAS  383 (567)
Q Consensus       304 ~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~~~~~~~l~~a~l~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~  383 (567)
                      +.+.|..+.+.-+......+-..+.........+.+.+    ..+|+.+ .. ...+..++++++.+.+...  .+.+++
T Consensus        67 ~~v~Dv~GhGv~AA~~~~~~~~~l~~~~~~~~~p~~il----~~ln~~~-~~-~~~~~~~t~~~~~id~~~~--~l~~~~  138 (399)
T 3ke6_A           67 LVVGDVVGHGVEAAAVMSQLRTALRMQISAGYTVVEAL----EAVDRFH-KQ-VPGSKSATMCVGSLDFTSG--EFQYCT  138 (399)
T ss_dssp             EEEEECSSCSHHHHHHHHHHHHHHHHHHHTTCCHHHHH----HHHHHHG-GG-STTCTTCEEEEEEEETTTC--EEEEEE
T ss_pred             EEEEEecCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH----HHHHHHH-Hh-cCCCcEEEEEEEEEECCCC--EEEEEC
Confidence            44556555444444444444443433222222333333    2334422 21 2233445555555544333  789999


Q ss_pred             ecCceEEEEe-CCeeeeCCCCCCCCCCCCCCCCCCCccCCCceEEEEecCCCeEEEEEcCCCCC----------------
Q psy12423        384 VGEAKAILCR-QAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHVTEVMLHENDHFLILANKSVSE----------------  446 (567)
Q Consensus       384 ~Gdsr~~l~r-~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v~~~~l~~~d~~lil~sDGl~~----------------  446 (567)
                      .|....|++| +|....+..++..  .+|.       ....+...+.+.++|.+ +|+||||++                
T Consensus       139 aGh~~~~l~~~~g~~~~l~~~~~~--plG~-------~~~~~~~~~~l~~Gd~l-~l~TDGl~e~~~~~~~~g~~~l~~~  208 (399)
T 3ke6_A          139 AGHPPPLLVTADASARYVEPTGAG--PLGS-------GTGFPVRSEVLNIGDAI-LFYTDGLIERPGRPLEASTAEFADL  208 (399)
T ss_dssp             ESSCCCEEECTTSCEEECCCCSCC--CTTS-------SCCCCCEEEECCTTCEE-EEECTTTTSCTTCCHHHHHHHHHHH
T ss_pred             CCCChhEEEeCCCCEEEeecCCCc--ceEC-------CCCceeEEEEECCCCEE-EEECCCcccCCCCCcchhHHHHHHH
Confidence            9999999999 5656667655432  3453       22455677888887655 589999981                


Q ss_pred             ---------------HHHHHHHHHHHHHH-----cCCCCCcEEEEEEeC
Q psy12423        447 ---------------PVLAAKRIQDLAQS-----YGSEDNLSVLVLRFQ  475 (567)
Q Consensus       447 ---------------~~~~a~~l~~~a~~-----~g~~dnit~~vv~~~  475 (567)
                                     |...++.+++.+++     .+..|+|||+++++.
T Consensus       209 l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~DDitvl~vr~~  257 (399)
T 3ke6_A          209 AASIASGSGGFVLDAPARPIDRLCSDTLELLLRSTGYNDDVTLLAMQRR  257 (399)
T ss_dssp             HHHHTC----------CCHHHHHHHHHHHHHHHTTCCSSCEEEEEEEEC
T ss_pred             HHHhhcccccccccChhhHHHHHHHHHHHHhccCCCCCCceEEEEEEee
Confidence                           11123445555543     457899999999986

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.50  E-value=5.7e-05  Score=68.04  Aligned_cols=85  Identities=16%  Similarity=0.202  Sum_probs=50.7

Q ss_pred             CcccEEecccCCCCCc-ccccCCCcCCcEEECcCCC-CCCCChhhhhc---cCCCccEEECCCCC-CCC--CchhhhCCC
Q psy12423        167 ARLQHLDISYNELESL-PDWIDTCPELETIFASHNR-ITQLPSQFFCR---ELGKLHTLQLSFNR-LTS--LPSLIRQIA  238 (567)
Q Consensus       167 ~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~-l~~l~~~~~~~---~l~~L~~L~Ls~N~-l~~--lp~~~~~l~  238 (567)
                      ..|+.||+++|.++.. -..+..+++|++|+|++|. |+.-.......   ..++|++|+|++|. |+.  + ..+..++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            3678888888877632 2345677788888888774 65322222211   01357777777763 664  2 2345667


Q ss_pred             CCcEEEccCCC-CCC
Q psy12423        239 SLKYLFLQSNS-INI  252 (567)
Q Consensus       239 ~L~~L~Ls~N~-l~~  252 (567)
                      +|+.|+|++|. |+.
T Consensus       140 ~L~~L~L~~c~~Itd  154 (176)
T 3e4g_A          140 NLKYLFLSDLPGVKE  154 (176)
T ss_dssp             TCCEEEEESCTTCCC
T ss_pred             CCCEEECCCCCCCCc
Confidence            77777777763 553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=97.36  E-value=0.00028  Score=60.46  Aligned_cols=55  Identities=24%  Similarity=0.314  Sum_probs=35.3

Q ss_pred             EEECCCCCCC--CCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        219 TLQLSFNRLT--SLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       219 ~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      .++.+++.++  .+|..+  .++|++|+|++|+|+.++...|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            5566666666  566432  235667777777777777776777777777777776543

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.18  E-value=8.6e-05  Score=68.17  Aligned_cols=83  Identities=16%  Similarity=0.211  Sum_probs=48.7

Q ss_pred             CcccEEecccCCCC-----CcccccCCCcCCcEEECcCCCCCCCC-----hhhhhccCCCccEEECCCCC---CCC----
Q psy12423        167 ARLQHLDISYNELE-----SLPDWIDTCPELETIFASHNRITQLP-----SQFFCRELGKLHTLQLSFNR---LTS----  229 (567)
Q Consensus       167 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~l~-----~~~~~~~l~~L~~L~Ls~N~---l~~----  229 (567)
                      ..|+.|+|++|.|.     .|...+..-+.|++|+|++|.|+.-.     ..+..  ...|++|+|++|.   +..    
T Consensus        70 ~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~--N~tL~~L~L~n~~~~~ig~~g~~  147 (197)
T 1pgv_A           70 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLV--TQSIVEFKADNQRQSVLGNQVEM  147 (197)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTT--TCCCSEEECCCCSSCCCCHHHHH
T ss_pred             CCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhh--CCceeEEECCCCcCcCcCHHHHH
Confidence            45667777777666     33444555567777777777776321     11111  3467777777543   331    


Q ss_pred             -CchhhhCCCCCcEEEccCCCCC
Q psy12423        230 -LPSLIRQIASLKYLFLQSNSIN  251 (567)
Q Consensus       230 -lp~~~~~l~~L~~L~Ls~N~l~  251 (567)
                       +...+...+.|+.|+++.|.+.
T Consensus       148 ~ia~aL~~N~tL~~L~l~~~~~g  170 (197)
T 1pgv_A          148 DMMMAIEENESLLRVGISFASME  170 (197)
T ss_dssp             HHHHHHHHCSSCCEEECCCCCHH
T ss_pred             HHHHHHHhCCCcCeEeccCCCcc
Confidence             3344566677888888766543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.96  E-value=0.0013  Score=56.25  Aligned_cols=54  Identities=26%  Similarity=0.301  Sum_probs=24.5

Q ss_pred             EEecccCCCC--CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423        171 HLDISYNELE--SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL  227 (567)
Q Consensus       171 ~L~Ls~n~l~--~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l  227 (567)
                      .++.+++.++  .+|..+  .++|+.|+|++|+|+.++...|.. +++|+.|+|++|.+
T Consensus        12 ~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~-l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDA-LPALRTAHLGANPW   67 (130)
T ss_dssp             EEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGG-CTTCCEEECCSSCC
T ss_pred             EEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhh-ccccCEEEecCCCe
Confidence            4444555554  444322  123445555555555554444443 44444444444433

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=96.87  E-value=0.0008  Score=60.50  Aligned_cols=58  Identities=5%  Similarity=0.046  Sum_probs=41.2

Q ss_pred             CCccEEEecCCCCCCcc--ccCCCCCccEEEccCCC-CCCCC---Ccc----cccCcEEEcccCc-ccc
Q psy12423         82 GELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENS-IESLD---LGA----LNRLESIKCSRNQ-LKT  139 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~-l~~~~---~~~----l~~L~~L~ls~n~-l~~  139 (567)
                      ..|+.||++++.++...  .+..+++|+.|+|++|. |++..   +..    .++|++|++++|. +++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD  129 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTD  129 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCH
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCH
Confidence            47899999999887543  67788999999999985 66533   333    2357777777763 543

>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A

Probab=95.21  E-value=0.12  Score=52.57  Aligned_cols=116  Identities=12%  Similarity=0.047  Sum_probs=63.3

Q ss_pred             HHHHHHhhhcccccCceeEEEEeecCccceEEEEEEEecCce-EEEEeCCeeeeCCCCCCCCCCCCCCCCCCCccCCCce
Q psy12423        347 TAHREIKDSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAK-AILCRQAGSLTFTHAPTLSPPVPPQGSCPLSFPDPHV  425 (567)
Q Consensus       347 ~~n~~i~~~~~~~~~st~~~~~~~~~~~~~~~l~~a~~Gdsr-~~l~r~~~~~~lt~dh~~~r~~g~~~~~~~~~~~p~v  425 (567)
                      .+|+.+...  ..+...+++.+...+...  .+..++.|-.- .|+.++|+...+...   ...+|...     ....+.
T Consensus       253 ~ln~~l~~~--~~~~~~t~~~~~~d~~~~--~l~~~~aGh~p~~~~~~~g~~~~l~~~---~~plG~~~-----~~~~~~  320 (394)
T 3eq2_A          253 HINRGLINT--KLGKHVTMLGGVIDLEKN--SLTYSIGGHLPLPVLFVEGQAGYLEGR---GLPVGLFD-----DATYDD  320 (394)
T ss_dssp             HHHHHHHHT--TCCCCEEEEEEEEETTTT--EEEEEECSSSCCCEEEETTEEEECCCC-----CCSCCC-----CC--CC
T ss_pred             HHHHHHhcc--CcCcEEEEEEEEEECCCC--EEEEEcCCCCCCcEEecCCceEecCCC---CceeEecC-----CCceEE
Confidence            445555432  223334555555554333  78899999744 677788887777532   23355332     123455


Q ss_pred             EEEEecCCCeEEEEEcCCCCCH--------------------HHHHHHHHHHHHHc---CCCCCcEEEEEEeC
Q psy12423        426 TEVMLHENDHFLILANKSVSEP--------------------VLAAKRIQDLAQSY---GSEDNLSVLVLRFQ  475 (567)
Q Consensus       426 ~~~~l~~~d~~lil~sDGl~~~--------------------~~~a~~l~~~a~~~---g~~dnit~~vv~~~  475 (567)
                      .++.+.++|. |++.|||+.+.                    ....+.+.+.....   ...|+||+++++.+
T Consensus       321 ~~~~l~~gd~-l~l~TDG~~e~~~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~DDit~l~i~~~  392 (394)
T 3eq2_A          321 RVMELPPSFS-LSLFSDGILDVLPGATLKEKEASLPEQVAAAGGTLDGLRQVFGLANLAEMPDDIALLVLSRN  392 (394)
T ss_dssp             EEEECCSSCE-EEECSSCCCC-----CCSTTTTTSHHHHHTTC--CHHHHHHHSCCCSCC--CCCEEEEEC--
T ss_pred             EEEEeCCCCE-EEEECCCcccccCcccchhhHHHHHHHHHhcchhHHHHHHHhcccCCCCCCCceEEEEEecc
Confidence            6778888765 55899999811                    11123344433332   23699999999864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	567
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-14
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-09
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	9e-08
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-06
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.004
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-09
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-10
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-09
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-09
d1txoa_	235	d.219.1.1 (A:) putative serine/threonine phosphata	5e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-05
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	7e-07
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	9e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1a6qa2	295	d.219.1.1 (A:2-296) Protein serine/threonine phosp	5e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	7e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	2e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	5e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	3e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 72.7 bits (177), Expect = 2e-14
 Identities = 40/185 (21%), Positives = 81/185 (43%), Gaps = 10/185 (5%)

Query: 91  SNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTL--VLNGSSL 147
           +NQ+     LG   NL  L ++ N ++ +  L +L  L  +  + NQ+  L  +   + L
Sbjct: 206 NNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKL 265

Query: 148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPS 207
             +  G N++ ++        L +L+++ N+LE     I     L  +    N I+ +  
Sbjct: 266 TELKLGANQISNISPLAGLTALTNLELNENQLED-ISPISNLKNLTYLTLYFNNISDISP 324

Query: 208 QFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVL 267
                 L KL  L  + N+++ + SL   + ++ +L    N I+ L    L N +++  L
Sbjct: 325 ---VSSLTKLQRLFFANNKVSDVSSL-ANLTNINWLSAGHNQISDLTP--LANLTRITQL 378

Query: 268 NISKN 272
            ++  
Sbjct: 379 GLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 59.6 bits (143), Expect = 4e-10
 Identities = 36/167 (21%), Positives = 64/167 (38%), Gaps = 29/167 (17%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTL-- 140
           L  ++L  NQLK    L +  NLT LD++ N I +L  L  L +L  +K   NQ+  +  
Sbjct: 221 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP 280

Query: 141 ----------------------VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE 178
                                 + N  +L  +    N +  +       +LQ L  + N+
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNK 340

Query: 179 LESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
           +  +   +     +  + A HN+I+ L        L ++  L L+  
Sbjct: 341 VSDVS-SLANLTNINWLSAGHNQISDLTP---LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 58/323 (17%), Positives = 120/323 (37%), Gaps = 39/323 (12%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVF------LRHPMSPLNNVIEH 54
           +   + DR  +    G +     L  ++ + N+++ +         +   M+        
Sbjct: 46  VTTLQADRLGIKSIDGVE-YLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT 104

Query: 55  GIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSEN 114
            +A           +  I +    +    L  + L SN +     L    +L  L     
Sbjct: 105 PLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQ 164

Query: 115 SIESLDLGALNRLESIKCSRNQLKTLVLNGS--SLISVIAGNNKLQSLIVSPRPARLQHL 172
             +   L  L  LE +  S N++  + +     +L S+IA NN++  +        L  L
Sbjct: 165 VTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL 224

Query: 173 DISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS 232
            ++ N+L+ +   + +   L  +  ++N+I+ L        L KL  L+L  N+++++  
Sbjct: 225 SLNGNQLKDIG-TLASLTNLTDLDLANNQISNLAP---LSGLTKLTELKLGANQISNISP 280

Query: 233 LI---------------------RQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISK 271
           L                        + +L YL L  N+I+ +    + + +KL+ L  + 
Sbjct: 281 LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFAN 338

Query: 272 NCLKMLPSLQKGFYLLNISQLRL 294
           N +  + SL     L NI+ L  
Sbjct: 339 NKVSDVSSLAN---LTNINWLSA 358

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 51.9 bits (123), Expect = 9e-08
 Identities = 30/186 (16%), Positives = 56/186 (30%), Gaps = 32/186 (17%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVF--------LRHPMSPLNNVI 52
           L E  ++ N L +      S   L  L  A N+IS+L           L+   + ++N+ 
Sbjct: 221 LDELSLNGNQLKDIGTLA-SLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNIS 279

Query: 53  EHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVS 112
                         +     +          LT + L  N +     + +   L  L  +
Sbjct: 280 PLAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFNNISDISPVSSLTKLQRLFFA 337

Query: 113 ENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQH 171
            N +  +  L  L  +  +    NQ+  L                L +L       R+  
Sbjct: 338 NNKVSDVSSLANLTNINWLSAGHNQISDLT--------------PLANL------TRITQ 377

Query: 172 LDISYN 177
           L ++  
Sbjct: 378 LGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 1e-06
 Identities = 45/265 (16%), Positives = 84/265 (31%), Gaps = 47/265 (17%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
           E     L    +  T+   +   +TTL      I+S+D +  LN L  I  S NQL  + 
Sbjct: 23  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 82

Query: 142 -LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
            L   + +  I  NN   + I              +N   +  D +     L  +  S N
Sbjct: 83  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 142

Query: 201 RITQLPSQFFCR----------------------------------------ELGKLHTL 220
            I+ + +                                             +L  L +L
Sbjct: 143 TISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESL 202

Query: 221 QLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL 280
             + N+++ +   +  + +L  L L  N +  +    L + + L  L+++ N +  L  L
Sbjct: 203 IATNNQISDITP-LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAPL 259

Query: 281 QKGFYL--LNISQLRLPGFCNSDAL 303
                L  L +   ++        L
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGL 284

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 10/74 (13%), Positives = 28/74 (37%), Gaps = 1/74 (1%)

Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
           +  +  + G   +   +      ++  L      ++S+ D ++    L  I  S+N++T 
Sbjct: 22  AEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLTD 80

Query: 205 LPSQFFCRELGKLH 218
           +       +L  + 
Sbjct: 81  ITPLKNLTKLVDIL 94

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.1 bits (144), Expect = 2e-10
 Identities = 36/196 (18%), Positives = 69/196 (35%), Gaps = 19/196 (9%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVL 142
            L  V      L+  +      +   LD+  N I  +  G    L         L TL+L
Sbjct: 11  HLRVVQCSDLGLE-KVPKDLPPDTALLDLQNNKITEIKDGDFKNL-------KNLHTLIL 62

Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRI 202
             + +  +  G      L+      +L+ L +S N+L+ LP+ +      + +    N I
Sbjct: 63  INNKISKISPGA--FAPLV------KLERLYLSKNQLKELPEKMPKTL--QELRVHENEI 112

Query: 203 TQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSS 262
           T++    F   L ++  ++L  N L S          +K L     +   +  +      
Sbjct: 113 TKVRKSVFNG-LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPP 171

Query: 263 KLKVLNISKNCLKMLP 278
            L  L++  N +  + 
Sbjct: 172 SLTELHLDGNKITKVD 187

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.0 bits (131), Expect = 7e-09
 Identities = 44/304 (14%), Positives = 90/304 (29%), Gaps = 32/304 (10%)

Query: 7   DRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQ 66
               L + P  +D  P    L    N+I+ +          L N+    +   +      
Sbjct: 18  SDLGLEKVP--KDLPPDTALLDLQNNKITEIK---DGDFKNLKNLHTLILINNKISKISP 72

Query: 67  DEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNR 126
                +V+         L  + L  NQLK  +       L  L V EN I  +     N 
Sbjct: 73  GAFAPLVK---------LERLYLSKNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFNG 122

Query: 127 LESIKCSRNQLKTLVLNG---------SSLISVIAGNNKLQSLIVSPRPARLQHLDISYN 177
           L  +         L  +G           L  +   +  + + I    P  L  L +  N
Sbjct: 123 LNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDGN 181

Query: 178 ELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQI 237
           ++  +                                  L  L L+ N+L  +P  +   
Sbjct: 182 KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADH 241

Query: 238 ASLKYLFLQSNSINILPQ------LFLQNSSKLKVLNISKNCLKMLPSLQKGF-YLLNIS 290
             ++ ++L +N+I+ +         +    +    +++  N ++        F  +   +
Sbjct: 242 KYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRA 301

Query: 291 QLRL 294
            ++L
Sbjct: 302 AVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 44.6 bits (104), Expect = 2e-05
 Identities = 27/119 (22%), Positives = 46/119 (38%), Gaps = 11/119 (9%)

Query: 189 CP-----ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKY 242
           CP      L  +  S   + ++P             L L  N++T +     + + +L  
Sbjct: 4   CPFRCQCHLRVVQCSDLGLEKVPKDLPPD----TALLDLQNNKITEIKDGDFKNLKNLHT 59

Query: 243 LFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS-LQKGFYLLNISQLRLPGFCNS 300
           L L +N I+ +         KL+ L +SKN LK LP  + K    L + +  +     S
Sbjct: 60  LILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKS 118

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 59.1 bits (141), Expect = 5e-10
 Identities = 22/86 (25%), Positives = 40/86 (46%), Gaps = 12/86 (13%)

Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
             D  P LE +  S+N++ +LP+        +L  L  SFN L  +P L +   +LK L 
Sbjct: 279 LCDLPPSLEELNVSNNKLIELPA-----LPPRLERLIASFNHLAEVPELPQ---NLKQLH 330

Query: 245 LQSNSINILPQLFLQNSSKLKVLNIS 270
           ++ N +   P +       ++ L ++
Sbjct: 331 VEYNPLREFPDIP----ESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 56.8 bits (135), Expect = 3e-09
 Identities = 23/110 (20%), Positives = 41/110 (37%), Gaps = 12/110 (10%)

Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLF 244
            I +          +   +    +  C     L  L +S N+L  LP+L      L+ L 
Sbjct: 254 NIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPALPP---RLERLI 310

Query: 245 LQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRL 294
              N +  +P+L       LK L++  N L+  P +       ++  LR+
Sbjct: 311 ASFNHLAEVPELP----QNLKQLHVEYNPLREFPDI-----PESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 3e-07
 Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 2/69 (2%)

Query: 124 LNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP 183
              LE +  S N+L  L      L  +IA  N L  +     P  L+ L + YN L   P
Sbjct: 283 PPSLEELNVSNNKLIELPALPPRLERLIASFNHLAEV--PELPQNLKQLHVEYNPLREFP 340

Query: 184 DWIDTCPEL 192
           D  ++  +L
Sbjct: 341 DIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 2e-06
 Identities = 20/65 (30%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT 228
              L+++   L SLP+     P LE++ AS N +T+LP          L +L +  N L 
Sbjct: 40  AHELELNNLGLSSLPELP---PHLESLVASCNSLTELPE-----LPQSLKSLLVDNNNLK 91

Query: 229 SLPSL 233
           +L  L
Sbjct: 92  ALSDL 96

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.3 bits (100), Expect = 5e-05
 Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 8/60 (13%)

Query: 198 SHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLF 257
           ++  ++ LP          L +L  S N LT LP L +   SLK L + +N++  L  L 
Sbjct: 46  NNLGLSSLPE-----LPPHLESLVASCNSLTELPELPQ---SLKSLLVDNNNLKALSDLP 97

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 3/57 (5%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTL 140
           L  +N+ +N+L    +      L  L  S N +  +       L+ +    N L+  
Sbjct: 286 LEELNVSNNKL--IELPALPPRLERLIASFNHLAEVP-ELPQNLKQLHVEYNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.3 bits (95), Expect = 2e-04
 Identities = 62/307 (20%), Positives = 105/307 (34%), Gaps = 17/307 (5%)

Query: 1   LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSP-LNNVIEHGIAEE 59
             E  ++   L+  P   +  P L+ L A+ N ++ LP   +   S  ++N     +++ 
Sbjct: 40  AHELELNNLGLSSLP---ELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDL 96

Query: 60  REEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL 119
                        +E+           +    N     +             +    E  
Sbjct: 97  PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156

Query: 120 DLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNEL 179
           +L  L  L +I    N LK L     SL S++AGNN L+ L        L  +    N L
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216

Query: 180 ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL--------- 230
           ++LPD   +   L         + +LP      ++ +     LS                
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276

Query: 231 PSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNIS 290
            SL     SL+ L + +N +  LP L      +L+ L  S N L  +P L +    L++ 
Sbjct: 277 RSLCDLPPSLEELNVSNNKLIELPALP----PRLERLIASFNHLAEVPELPQNLKQLHVE 332

Query: 291 QLRLPGF 297
              L  F
Sbjct: 333 YNPLREF 339

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 6e-04
 Identities = 23/84 (27%), Positives = 32/84 (38%), Gaps = 17/84 (20%)

Query: 123 ALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESL 182
           A++RL    C   Q   L LN          N  L SL     P  L+ L  S N L  L
Sbjct: 28  AVSRLR--DCLDRQAHELELN----------NLGLSSL--PELPPHLESLVASCNSLTEL 73

Query: 183 PDWIDTCPELETIFASHNRITQLP 206
           P+       L+++   +N +  L 
Sbjct: 74  PELP---QSLKSLLVDNNNLKALS 94

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.001
 Identities = 19/90 (21%), Positives = 32/90 (35%), Gaps = 4/90 (4%)

Query: 59  EREEDFEQDEDGIIVERREPE-VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIE 117
           ER       E   +   R  + +  +   + L +  L  + +     +L +L  S NS+ 
Sbjct: 14  ERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL--SSLPELPPHLESLVASCNSLT 71

Query: 118 SLDLGALNRLESIKCSRNQLKTLVLNGSSL 147
            L       L+S+    N LK L      L
Sbjct: 72  ELP-ELPQSLKSLLVDNNNLKALSDLPPLL 100

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 20/97 (20%), Positives = 30/97 (30%), Gaps = 27/97 (27%)

Query: 216 KLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK 275
           + H L+L+   L+SLP L                              L+ L  S N L 
Sbjct: 39  QAHELELNNLGLSSLPELPPH---------------------------LESLVASCNSLT 71

Query: 276 MLPSLQKGFYLLNISQLRLPGFCNSDALIGIFDSGDN 312
            LP L +    L +    L    +   L+      +N
Sbjct: 72  ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNN 108

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 56.6 bits (135), Expect = 1e-09
 Identities = 30/209 (14%), Positives = 66/209 (31%), Gaps = 24/209 (11%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV 141
               +    + +  T+   +   +TTL      + +++ +  LN L  ++   NQ+  L 
Sbjct: 20  NAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLA 79

Query: 142 LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNE-----------------LESLPD 184
              +         +      VS          +                     L    +
Sbjct: 80  PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLN 139

Query: 185 WIDTCPELETIFASHNRITQLPSQFFCRELG---KLHTLQLSFNRLTSLPSLIRQIASLK 241
            I     L  +                  L    KL TL+   N+++ +  L   + +L 
Sbjct: 140 QITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISPL-ASLPNLI 198

Query: 242 YLFLQSNSINILPQLFLQNSSKLKVLNIS 270
            + L++N I+ +    L N+S L ++ ++
Sbjct: 199 EVHLKNNQISDVS--PLANTSNLFIVTLT 225

>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]} Length = 235

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: putative serine/threonine phosphatase pstp/ppp
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 51.8 bits (123), Expect = 5e-08
 Identities = 32/217 (14%), Positives = 66/217 (30%), Gaps = 42/217 (19%)

Query: 297 FCNSDALIGIFD---SGDNGDIASTLVQSIPRILLEERTVKETASDYMKYTMLTAHREIK 353
                 L+ + D       G++AS LV +    L ++    +  +  +   +   +  I 
Sbjct: 22  VYAGARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAK-LDAAVRAGNSAIA 80

Query: 354 DSLHRYSLSATLCHLSLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPTLSPPVPPQ 413
             +        +       +     L +  +G+++  L R       T   T    +  +
Sbjct: 81  AQVEMEPDLEGMGTTLTAILFAGNRLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDE 140

Query: 414 G------------------SCPLSFPDPHVTEVMLHENDHFL-----------------I 438
           G                  +      +P +T       D +L                  
Sbjct: 141 GRITPEEAHSHPQRSLIMRALTGHEVEPTLTMREARAGDRYLLCSDGLSDPVSDETILEA 200

Query: 439 LANKSVSEPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ 475
           L    V+E   +A R+ +LA   G  DN++V+V   +
Sbjct: 201 LQIPEVAE---SAHRLIELALRGGGPDNVTVVVADLE 234

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.7 bits (117), Expect = 3e-07
 Identities = 33/199 (16%), Positives = 58/199 (29%), Gaps = 9/199 (4%)

Query: 81  KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQ- 136
                 VN     L   +      + T L +SEN + +     L    RL  +   R + 
Sbjct: 9   VASHLEVNCDKRNLT-ALPPDLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAEL 67

Query: 137 ---LKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELE 193
                   L     + +     +   L+    PA                  +    EL+
Sbjct: 68  TKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQ 127

Query: 194 TIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINIL 253
            ++   N +  LP                + N       L+  + +L  L LQ NS+  +
Sbjct: 128 ELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI 187

Query: 254 PQLFLQNSSKLKVLNISKN 272
           P+ F  +   L    +  N
Sbjct: 188 PKGFFGSHL-LPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 12/66 (18%), Positives = 22/66 (33%), Gaps = 2/66 (3%)

Query: 211 CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNIS 270
             ++     +      LT+LP  +        L L  N +       L   ++L  LN+ 
Sbjct: 6   VSKVASHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 271 KNCLKM 276
           +  L  
Sbjct: 64  RAELTK 69

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.0 bits (111), Expect = 3e-07
 Identities = 26/112 (23%), Positives = 49/112 (43%), Gaps = 5/112 (4%)

Query: 170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS 229
           + L +++ +L  L   ++    +  +  SHNR+  LP       L  L  LQ S N L +
Sbjct: 1   RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDNALEN 57

Query: 230 LPSLIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNCLKMLPSL 280
           +   +  +  L+ L L +N +     +  L +  +L +LN+  N L     +
Sbjct: 58  VDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 108

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.6 bits (110), Expect = 6e-07
 Identities = 24/134 (17%), Positives = 47/134 (35%), Gaps = 21/134 (15%)

Query: 108 TLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRP 166
            L ++   +  L  L  L  +  +  S N+L+ L    ++L                   
Sbjct: 2   VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRC----------------- 44

Query: 167 ARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNR 226
             L+ L  S N LE++    +     + +   +NR+ Q  +        +L  L L  N 
Sbjct: 45  --LEVLQASDNALENVDGVANLPRL-QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNS 101

Query: 227 LTSLPSLIRQIASL 240
           L     +  ++A +
Sbjct: 102 LCQEEGIQERLAEM 115

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 5e-05
 Identities = 31/120 (25%), Positives = 48/120 (40%), Gaps = 11/120 (9%)

Query: 88  NLRSNQLKGTIILGNYGNLTTLDVSENSIESL--DLGALNRLESIKCSRNQLKTL--VLN 143
           +L    L     L     +T LD+S N + +L   L AL  LE ++ S N L+ +  V N
Sbjct: 4   HLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDGVAN 63

Query: 144 GSSLISVIAGNNKLQSLIVSP---RPARLQHLDISYNELESLPDWID----TCPELETIF 196
              L  ++  NN+LQ            RL  L++  N L       +      P + +I 
Sbjct: 64  LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 123

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.1 bits (113), Expect = 7e-07
 Identities = 31/190 (16%), Positives = 69/190 (36%), Gaps = 8/190 (4%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLK-TL 140
           E    NL+   +   +      ++  +  + + I+S+  +  L  +  +  + N+L    
Sbjct: 25  ETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK 84

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
            L     +  +  +      + S +  +        +   S  + +   P+LE+++  +N
Sbjct: 85  PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNN 144

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
           +IT +       +L  L       + +  L  L      L+ L+L  N I+ L    L  
Sbjct: 145 KITDITVLSRLTKLDTLSLEDNQISDIVPLAGL----TKLQNLYLSKNHISDLRA--LAG 198

Query: 261 SSKLKVLNIS 270
              L VL + 
Sbjct: 199 LKNLDVLELF 208

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.1 bits (95), Expect = 1e-04
 Identities = 25/165 (15%), Positives = 51/165 (30%), Gaps = 4/165 (2%)

Query: 84  LTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIES-LDLGALNRLESIKCSRNQLKTLVL 142
           +  +   ++ +K    +    N+T L ++ N +     L  L  L  +    N++K L  
Sbjct: 48  IDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSS 107

Query: 143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRI 202
                              ++      Q   +     +     + +        +  +  
Sbjct: 108 LKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQ 167

Query: 203 TQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQS 247
                      L KL  L LS N ++ L +L   + +L  L L S
Sbjct: 168 ISDIVPL--AGLTKLQNLYLSKNHISDLRAL-AGLKNLDVLELFS 209

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.4 bits (111), Expect = 9e-07
 Identities = 40/187 (21%), Positives = 68/187 (36%), Gaps = 8/187 (4%)

Query: 83  ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLK-TL 140
           E     L    +  T+   +   +TTL      I+S+D +  LN L  I  S NQL    
Sbjct: 19  EKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDIT 78

Query: 141 VLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHN 200
            L   + +  I  NN   + I              +N   +  D +     L  +  S N
Sbjct: 79  PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSN 138

Query: 201 RITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQN 260
            I+ + +      L +L+        L  L +L     +L+ L + SN ++ +    L  
Sbjct: 139 TISDISALSGLTSLQQLNFSSNQVTDLKPLANL----TTLERLDISSNKVSDIS--VLAK 192

Query: 261 SSKLKVL 267
            + L+ L
Sbjct: 193 LTNLESL 199

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 1e-06
 Identities = 17/96 (17%), Positives = 37/96 (38%), Gaps = 10/96 (10%)

Query: 191 ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLT-----SLPSLIRQIASLKYLFL 245
           +++++      ++          L +   ++L    LT      + S +R   +L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 246 QSNSIN-----ILPQLFLQNSSKLKVLNISKNCLKM 276
           +SN +       + Q     S K++ L++   CL  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTG 98

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 5e-04
 Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 8/70 (11%)

Query: 84  LTSVNLRSNQLKGTII------LGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQL 137
           L  + L    +  +        L    +L  LD+S N +   D G L  +ES++     L
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG--DAGILQLVESVRQPGCLL 428

Query: 138 KTLVLNGSSL 147
           + LVL     
Sbjct: 429 EQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.001
 Identities = 14/89 (15%), Positives = 29/89 (32%), Gaps = 14/89 (15%)

Query: 169 LQHLDISYNEL-----ESLPDWIDTCPELETIFASHNRITQLPSQFFCREL----GKLHT 219
           L+ L ++  ++      SL   +     L  +  S+N +           +      L  
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 220 LQLSFNRLT-----SLPSLIRQIASLKYL 243
           L L     +      L +L +   SL+ +
Sbjct: 431 LVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 16/108 (14%), Positives = 28/108 (25%), Gaps = 26/108 (24%)

Query: 183 PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ---LSFNRLTSLPSLIRQIAS 239
                    L  ++ +   ++          L   H+L+   LS N L            
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG----------- 410

Query: 240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCL-----KMLPSLQK 282
                     I  L +   Q    L+ L +            L +L+K
Sbjct: 411 -------DAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} Length = 295

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (108), Expect = 5e-06
 Identities = 36/255 (14%), Positives = 71/255 (27%), Gaps = 67/255 (26%)

Query: 289 ISQLRLPGFCNSDALIGIFDSGDNGD-IASTLVQSIPRILLEERTVKETASDYMKY---- 343
            + + LP    S +   ++D G  G  +A    + +   +   +  K +A          
Sbjct: 40  TAVIGLPSGLESWSFFAVYD-GHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKN 98

Query: 344 ---------------------------TMLTAHREIKDSLHRYSLSATLCHLSLHPVTHR 376
                                      +            +  +   +   L  +   H 
Sbjct: 99  GIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHF 158

Query: 377 Y--MLHIASVGEAKAILC--------RQAGSLTFTHA---PTLSPPVPPQGSCPLSFPDP 423
           +      ++  E + I          R  GSL  + A              +  L  P+P
Sbjct: 159 FTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEP 218

Query: 424 HVTEVML-HENDHFLILANKSVSE--------------------PVLAAKRIQDLAQSYG 462
            V ++    E+D F+ILA   + +                           + D     G
Sbjct: 219 EVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKG 278

Query: 463 SEDNLSVLVLRFQGS 477
           S DN+SV+++ F  +
Sbjct: 279 SRDNMSVILICFPNA 293

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.6 bits (106), Expect = 7e-06
 Identities = 30/190 (15%), Positives = 61/190 (32%), Gaps = 16/190 (8%)

Query: 85  TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNG 144
            + +     L+  + +G       + +  N I  +   +     ++              
Sbjct: 14  VTTSCPQQGLQ-AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSN----VL 68

Query: 145 SSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQ 204
           + + +       L   +     A+L+ +D         P        L T+      + +
Sbjct: 69  ARIDAAAFTGLALLEQLDLSDNAQLRSVD---------PATFHGLGRLHTLHLDRCGLQE 119

Query: 205 LPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNSINILPQLFLQNSSK 263
           L    F      L  L L  N L +L     R + +L +LFL  N I+ +P+   +    
Sbjct: 120 LGPGLFRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS 178

Query: 264 LKVLNISKNC 273
           L  L + +N 
Sbjct: 179 LDRLLLHQNR 188

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 2e-04
 Identities = 27/150 (18%), Positives = 48/150 (32%), Gaps = 13/150 (8%)

Query: 132 CSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLP-DWIDTCP 190
           C      T       L +V  G            PA  Q + +  N +  +P      C 
Sbjct: 8   CYNEPKVTTSCPQQGLQAVPVG-----------IPAASQRIFLHGNRISHVPAASFRACR 56

Query: 191 ELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PSLIRQIASLKYLFLQSNS 249
            L  ++   N + ++ +  F               +L S+ P+    +  L  L L    
Sbjct: 57  NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCG 116

Query: 250 INILPQLFLQNSSKLKVLNISKNCLKMLPS 279
           +  L     +  + L+ L +  N L+ LP 
Sbjct: 117 LQELGPGLFRGLAALQYLYLQDNALQALPD 146

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (100), Expect = 2e-05
 Identities = 24/130 (18%), Positives = 48/130 (36%), Gaps = 16/130 (12%)

Query: 166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN 225
             R + LD+   ++  + +   T  + + I  S N I +L        L +L TL ++ N
Sbjct: 17  AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD---GFPLLRRLKTLLVNNN 73

Query: 226 RLTS-LPSLIRQIASLKYLFLQSNSINILPQL------------FLQNSSKLKVLNISKN 272
           R+      L + +  L  L L +NS+  L  L             +  +      +    
Sbjct: 74  RICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLY 133

Query: 273 CLKMLPSLQK 282
            +  +P ++ 
Sbjct: 134 VIYKVPQVRV 143

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 0.002
 Identities = 26/162 (16%), Positives = 59/162 (36%), Gaps = 23/162 (14%)

Query: 87  VNLRSNQLKGTIILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSS 146
           V L +  ++      N      LD+    I          +E++  + +Q   +  +   
Sbjct: 1   VKLTAELIEQAAQYTNAVRDRELDLRGYKIPV--------IENLGATLDQFDAIDFS--- 49

Query: 147 LISVIAGNNKLQSLIVSPRPARLQHLDISYNELES-LPDWIDTCPELETIFASHNRITQL 205
                  +N+++ L   P   RL+ L ++ N +           P+L  +  ++N + +L
Sbjct: 50  -------DNEIRKLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVEL 102

Query: 206 PSQFFCRELGKLHTLQLSFNRLTSLP----SLIRQIASLKYL 243
                   L  L  L +  N +T+       +I ++  ++ L
Sbjct: 103 GDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVL 144

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.0 bits (94), Expect = 2e-04
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 239 SLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ 281
               L +    I+ LP   L+N  KL+  +     LK LP+L+
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRARSTYN--LKKLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (90), Expect = 5e-04
 Identities = 14/51 (27%), Positives = 17/51 (33%), Gaps = 5/51 (9%)

Query: 184 DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ-LSFNRLTSLPSL 233
           D          +  S  RI  LPS         L  L+  S   L  LP+L
Sbjct: 195 DVFHGASGPVILDISRTRIHSLPSYGL----ENLKKLRARSTYNLKKLPTL 241

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 168 RLQHLDISYNELESLPDWI-DTCPELETIFASHNRITQLPS 207
               LDIS   + SLP +  +   +L     S   + +LP+
Sbjct: 202 GPVILDISRTRIHSLPSYGLENLKKLRAR--STYNLKKLPT 240

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 23/117 (19%)

Query: 107 TTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRP 166
            TLD++  ++     G L            +       S +          Q L     P
Sbjct: 3   QTLDLTGKNLHPDVTGRL--------LSQGVIAFRCPRSFMD---------QPLAEHFSP 45

Query: 167 ARLQHLDISYNEL--ESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQ 221
            R+QH+D+S + +   +L   +  C +L+ +     R++          L K   L 
Sbjct: 46  FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDP----IVNTLAKNSNLV 98

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 39.7 bits (91), Expect = 7e-04
 Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 3/65 (4%)

Query: 185 WIDTCPELETIFASHNRIT-QLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYL 243
            +     L  +   +NRI   LP      +L  LH+L +SFN L         +      
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVSFNNLCGEIPQGGNLQRFDVS 296

Query: 244 FLQSN 248
              +N
Sbjct: 297 AYANN 301

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 10/69 (14%), Positives = 24/69 (34%), Gaps = 3/69 (4%)

Query: 169 LQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGK---LHTLQLSFN 225
           L+   I+  + +S+   +     ++ I  S N I    +++    +     L   + S  
Sbjct: 10  LKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDI 69

Query: 226 RLTSLPSLI 234
               +   I
Sbjct: 70  FTGRVKDEI 78

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	567
d1a6qa2	295	Protein serine/threonine phosphatase 2C, catalytic	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.92
d1txoa_	235	putative serine/threonine phosphatase pstp/ppp {My	99.9
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.89
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.88
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.88
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.86
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.86
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.82
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.79
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.77
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.75
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.74
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.72
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.7
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.63
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.58
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.54
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.53
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.49
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.49
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.48
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.38
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.29
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.28
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.26
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.25
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.24
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.21
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.16
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.31
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.12
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.94
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.49
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.32
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.81

>d1a6qa2 d.219.1.1 (A:2-296) Protein serine/threonine phosphatase 2C, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: Protein serine/threonine phosphatase 2C, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-27  Score=235.79  Aligned_cols=172  Identities=19%  Similarity=0.309  Sum_probs=144.1

Q ss_pred             CcceeeccCCCCchhhhHHhhhhHHHHHhhhhhh--------hhhhHHHHHHHHHHHHHHhhhcc----cccCceeEEEE
Q psy12423        301 DALIGIFDSGDNGDIASTLVQSIPRILLEERTVK--------ETASDYMKYTMLTAHREIKDSLH----RYSLSATLCHL  368 (567)
Q Consensus       301 ~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~l~--------~~~~~~l~~a~l~~n~~i~~~~~----~~~~st~~~~~  368 (567)
                      .++|++||||++..++.++...++..+.+.....        +...++++.+|..+++.+.....    ...+++|++.+
T Consensus        52 ~~lf~V~DGhGG~~~s~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~GtTa~~~  131 (295)
T d1a6qa2          52 WSFFAVYDGHAGSQVAKYCCEHLLDHITNNQDFKGSAGAPSVENVKNGIRTGFLEIDEHMRVMSEKKHGADRSGSTAVGV  131 (295)
T ss_dssp             EEEEEEEEEESCSHHHHHHHHHHHHHHHTSHHHHCSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCEECEEEE
T ss_pred             eEEEEEEeCCCChHHHHHHHHHHHHHHHHhhhhccccccchHHHHHHHHHHHHHHHHHHHhhhhhhccCcCCCCCeEEEE
Confidence            4689999999999999999999998887654322        23478899999999887654322    23355666666


Q ss_pred             eecCccceEEEEEEEecCceEEEEeCCeeeeCCCCCC---------------------------CCCCCCCCCCC-----
Q psy12423        369 SLHPVTHRYMLHIASVGEAKAILCRQAGSLTFTHAPT---------------------------LSPPVPPQGSC-----  416 (567)
Q Consensus       369 ~~~~~~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~---------------------------~~r~~g~~~~~-----  416 (567)
                      .+...    ++++||+||||+|++|+|..++||+||+                           ++|++|+..++     
T Consensus       132 ~i~~~----~l~vanvGDSR~~l~~~~~~~~lT~dH~~~~~~E~~Ri~~~gg~v~~~r~~g~l~~tRa~Gd~~~k~~~~~  207 (295)
T d1a6qa2         132 LISPQ----HTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMIQRVNGSLAVSRALGDFDYKCVHGK  207 (295)
T ss_dssp             EECSS----EEEEEEESSCEEEEEETTEEEEECCCCCTTSHHHHHHHHHTTCCEETTEETTTBSCSBCEECGGGSCCTTC
T ss_pred             EeeCC----EEEEEecCCCeEEEeecccceeeccccCcccHHHHhhHhhcCCcccccccCCceeeeeccCcHHhhhcccc
Confidence            66665    8999999999999999999999999997                           68999987653     


Q ss_pred             ----CCccCCCceEEEEec-CCCeEEEEEcCCCC--------------------CHHHHHHHHHHHHHHcCCCCCcEEEE
Q psy12423        417 ----PLSFPDPHVTEVMLH-ENDHFLILANKSVS--------------------EPVLAAKRIQDLAQSYGSEDNLSVLV  471 (567)
Q Consensus       417 ----~~~~~~p~v~~~~l~-~~d~~lil~sDGl~--------------------~~~~~a~~l~~~a~~~g~~dnit~~v  471 (567)
                          ++++++|||..+++. ++|+||||||||||                    +++.+|+.|++.|+.+|++|||||||
T Consensus       208 ~~~~~~v~~~Pdi~~~~~~~~~~~flvL~SDGl~d~l~~~ei~~~v~~~~~~~~~~~~~a~~Lv~~A~~~gs~DNiTviv  287 (295)
T d1a6qa2         208 GPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRSRLEVTDDLEKVCNEVVDTCLYKGSRDNMSVIL  287 (295)
T ss_dssp             CGGGSSSBCCCEEEEEECCTTTEEEEEEECHHHHTTSCHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCSCEEEEE
T ss_pred             CcccccccccccceEEEeecccceeEeeecCcccccCCHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHhcCCCCCeEEEE
Confidence                569999999999987 56789999999999                    68889999999999999999999999


Q ss_pred             EEeCC
Q psy12423        472 LRFQG  476 (567)
Q Consensus       472 v~~~~  476 (567)
                      |+|.+
T Consensus       288 v~~~~  292 (295)
T d1a6qa2         288 ICFPN  292 (295)
T ss_dssp             EECTT
T ss_pred             EeccC
Confidence            99984

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=3.8e-24  Score=219.33  Aligned_cols=270  Identities=19%  Similarity=0.289  Sum_probs=173.9

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |++|++++++|+.+. .+..+++|++|+|++|+|+++|+  +.+++.|+.+          .+..+....++    .+..
T Consensus        46 l~~L~l~~~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~--l~~L~~L~~L----------~L~~n~i~~i~----~l~~  108 (384)
T d2omza2          46 VTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDI----------LMNNNQIADIT----PLAN  108 (384)
T ss_dssp             CCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEE----------ECCSSCCCCCG----GGTT
T ss_pred             CCEEECCCCCCCCcc-ccccCCCCCEEeCcCCcCCCCcc--ccCCcccccc----------ccccccccccc----cccc
Confidence            567777777777763 46677777777777777777764  3345555544          11111111111    2345


Q ss_pred             CCCccEEEecCCCCCCcc--------------------------------------------------------------
Q psy12423         81 KGELTSVNLRSNQLKGTI--------------------------------------------------------------   98 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~--------------------------------------------------------------   98 (567)
                      +++|+.|+++++.+++..                                                              
T Consensus       109 l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (384)
T d2omza2         109 LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVS  188 (384)
T ss_dssp             CTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccc
Confidence            556666666555544321                                                              


Q ss_pred             ---ccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCccccee--cCCCCCcEEEcCCCccccccCCCCCCcccEE
Q psy12423         99 ---ILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHL  172 (567)
Q Consensus        99 ---~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L  172 (567)
                         .+..+++++.+++++|.++.+ +...+++|++|++++|.++.++  ..+++|+.|++++|.++++++...+++|++|
T Consensus       189 ~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L  268 (384)
T d2omza2         189 DISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL  268 (384)
T ss_dssp             CCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEE
T ss_pred             cccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEe
Confidence               233445666666666666665 3455666777777777766654  3456777777777777766655556677777


Q ss_pred             ecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCC
Q psy12423        173 DISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINI  252 (567)
Q Consensus       173 ~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~  252 (567)
                      ++++|.++.++. +..++.++.+.+..|.++.++..  .. +++++.|++++|++++++. +..+++|++|++++|+|+.
T Consensus       269 ~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~~--~~-~~~l~~L~ls~n~l~~l~~-l~~l~~L~~L~L~~n~l~~  343 (384)
T d2omza2         269 KLGANQISNISP-LAGLTALTNLELNENQLEDISPI--SN-LKNLTYLTLYFNNISDISP-VSSLTKLQRLFFANNKVSD  343 (384)
T ss_dssp             ECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGG--GG-CTTCSEEECCSSCCSCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred             eccCcccCCCCc-ccccccccccccccccccccccc--ch-hcccCeEECCCCCCCCCcc-cccCCCCCEEECCCCCCCC
Confidence            777777776654 55666777777777777765432  22 7788888888888887754 6778888888888888887


Q ss_pred             CchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCC
Q psy12423        253 LPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLP  295 (567)
Q Consensus       253 l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~  295 (567)
                      ++.  +.++++|++|++++|+|+.+|+ +.++++|+.++++.|
T Consensus       344 l~~--l~~l~~L~~L~l~~N~l~~l~~-l~~l~~L~~L~L~~N  383 (384)
T d2omza2         344 VSS--LANLTNINWLSAGHNQISDLTP-LANLTRITQLGLNDQ  383 (384)
T ss_dssp             CGG--GGGCTTCCEEECCSSCCCBCGG-GTTCTTCSEEECCCE
T ss_pred             Chh--HcCCCCCCEEECCCCcCCCChh-hccCCCCCEeeCCCC
Confidence            763  5678888888888888887774 556666666666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=6.6e-24  Score=211.17  Aligned_cols=237  Identities=20%  Similarity=0.291  Sum_probs=126.9

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      ++.++-++++++++|..+.  ++|++|+|++|+|+++|+..|.+++                                  
T Consensus        12 ~~~~~C~~~~L~~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~----------------------------------   55 (305)
T d1xkua_          12 LRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLK----------------------------------   55 (305)
T ss_dssp             TTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCT----------------------------------
T ss_pred             CCEEEecCCCCCccCCCCC--CCCCEEECcCCcCCCcChhHhhccc----------------------------------
Confidence            3578888999999998774  6899999999999999876655444                                  


Q ss_pred             CCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCccccee----cCCCCCcEEEcCC
Q psy12423         81 KGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGN  154 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~  154 (567)
                        +|++|++++|.+....  .|.++++|++|++++|+++.++......+..|.+..|.+..+.    .....+..+....
T Consensus        56 --~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l~~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~  133 (305)
T d1xkua_          56 --NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGT  133 (305)
T ss_dssp             --TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCCSSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCS
T ss_pred             --cccccccccccccccchhhhhCCCccCEecccCCccCcCccchhhhhhhhhccccchhhhhhhhhhcccccccccccc
Confidence              5555555555555443  3555555556666555555555444455555555555555443    1223334444444


Q ss_pred             CccccccCC--CC--CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC
Q psy12423        155 NKLQSLIVS--PR--PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL  230 (567)
Q Consensus       155 n~l~~~~~~--~~--~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l  230 (567)
                      |........  .+  +++|+.+++++|.+..+|..+  +++|+.|++++|.+...+...+.. ++.++.|++++|.++.+
T Consensus       134 n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~--~~~L~~L~l~~n~~~~~~~~~~~~-~~~l~~L~~s~n~l~~~  210 (305)
T d1xkua_         134 NPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGL--PPSLTELHLDGNKITKVDAASLKG-LNNLAKLGLSFNSISAV  210 (305)
T ss_dssp             SCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSC--CTTCSEEECTTSCCCEECTGGGTT-CTTCCEEECCSSCCCEE
T ss_pred             ccccccCCCccccccccccCccccccCCccccCccc--CCccCEEECCCCcCCCCChhHhhc-ccccccccccccccccc
Confidence            332222111  11  344555555555554444322  344555555555544333333332 44455555555555443


Q ss_pred             c-hhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        231 P-SLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       231 p-~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      + ..+..+++|++|+|++|.|+.+|.. +..+++|+.|+|++|+|+.|+.
T Consensus       211 ~~~~~~~l~~L~~L~L~~N~L~~lp~~-l~~l~~L~~L~Ls~N~i~~i~~  259 (305)
T d1xkua_         211 DNGSLANTPHLRELHLNNNKLVKVPGG-LADHKYIQVVYLHNNNISAIGS  259 (305)
T ss_dssp             CTTTGGGSTTCCEEECCSSCCSSCCTT-TTTCSSCCEEECCSSCCCCCCT
T ss_pred             ccccccccccceeeecccccccccccc-cccccCCCEEECCCCccCccCh
Confidence            2 2344445555555555555555432 2345555555555555554443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.92  E-value=8.2e-24  Score=216.81  Aligned_cols=263  Identities=19%  Similarity=0.285  Sum_probs=210.6

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhh--hccchhh----------ccccc---
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIE--HGIAEER----------EEDFE---   65 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~--~~~~~~~----------~~~~~---   65 (567)
                      |++|+|++|+|+.+|+ |+++++|++|++++|.|..+++  +..++.|+.+..  ..+....          .....   
T Consensus        68 L~~L~Ls~N~l~~l~~-l~~L~~L~~L~L~~n~i~~i~~--l~~l~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  144 (384)
T d2omza2          68 LTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTI  144 (384)
T ss_dssp             CCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEEEEEEEE
T ss_pred             CCEEeCcCCcCCCCcc-ccCCcccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccc
Confidence            7899999999999985 9999999999999999998875  234555554310  0000000          00000   


Q ss_pred             ------------------cccC------------------CcccccCCCCCCCCccEEEecCCCCCCccccCCCCCccEE
Q psy12423         66 ------------------QDED------------------GIIVERREPEVKGELTSVNLRSNQLKGTIILGNYGNLTTL  109 (567)
Q Consensus        66 ------------------~~~~------------------~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L  109 (567)
                                        ....                  ...........+++++.+++++|.+++..++..+++|++|
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L  224 (384)
T d2omza2         145 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGILTNLDEL  224 (384)
T ss_dssp             CCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEE
T ss_pred             cccccccccccccccccccccchhhhhccccccccccccccccccccccccccccceeeccCCccCCCCcccccCCCCEE
Confidence                              0000                  0000112334678999999999999988778888999999


Q ss_pred             EccCCCCCCCC-CcccccCcEEEcccCccccee--cCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCccccc
Q psy12423        110 DVSENSIESLD-LGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWI  186 (567)
Q Consensus       110 ~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l  186 (567)
                      ++++|.++.++ +..+++|+.|++++|.++.+.  ..+++|+.|+++++.++++.+...+..++.++++.|.++.++. +
T Consensus       225 ~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~~~l~~l~~~~n~l~~~~~-~  303 (384)
T d2omza2         225 SLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISP-I  303 (384)
T ss_dssp             ECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCSCCGG-G
T ss_pred             ECCCCCCCCcchhhcccccchhccccCccCCCCcccccccCCEeeccCcccCCCCccccccccccccccccccccccc-c
Confidence            99999999874 788999999999999999875  4678999999999999988776668899999999999998754 7


Q ss_pred             CCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcE
Q psy12423        187 DTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKV  266 (567)
Q Consensus       187 ~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~  266 (567)
                      ..+++++.|++++|+++.++.  +.. +++|++|++++|+|+.++ .+..+++|++|++++|+|+++++  +.++++|+.
T Consensus       304 ~~~~~l~~L~ls~n~l~~l~~--l~~-l~~L~~L~L~~n~l~~l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~  377 (384)
T d2omza2         304 SNLKNLTYLTLYFNNISDISP--VSS-LTKLQRLFFANNKVSDVS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQ  377 (384)
T ss_dssp             GGCTTCSEEECCSSCCSCCGG--GGG-CTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSE
T ss_pred             chhcccCeEECCCCCCCCCcc--ccc-CCCCCEEECCCCCCCCCh-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCE
Confidence            888999999999999998864  333 999999999999999987 58899999999999999999987  689999999


Q ss_pred             EEccCCc
Q psy12423        267 LNISKNC  273 (567)
Q Consensus       267 L~Ls~N~  273 (567)
                      |+|++|.
T Consensus       378 L~L~~Na  384 (384)
T d2omza2         378 LGLNDQA  384 (384)
T ss_dssp             EECCCEE
T ss_pred             eeCCCCc
Confidence            9999983

>d1txoa_ d.219.1.1 (A:) putative serine/threonine phosphatase pstp/ppp {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: PP2C-like
superfamily: PP2C-like
family: PP2C-like
domain: putative serine/threonine phosphatase pstp/ppp
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.90  E-value=3e-23  Score=198.42  Aligned_cols=165  Identities=17%  Similarity=0.198  Sum_probs=129.0

Q ss_pred             CCcceeeccCCCCchhhhHHhhhhHHHHHhhhh--hhhhhhHHHHHHHHHHHHHHhhhcc----cccCceeEEEEeecCc
Q psy12423        300 SDALIGIFDSGDNGDIASTLVQSIPRILLEERT--VKETASDYMKYTMLTAHREIKDSLH----RYSLSATLCHLSLHPV  373 (567)
Q Consensus       300 ~~~~~~~~dg~~~~~is~~l~~~lP~~l~~~~~--l~~~~~~~l~~a~l~~n~~i~~~~~----~~~~st~~~~~~~~~~  373 (567)
                      ...+|.++||+++..........++..+.+...  ....+.+.++.++..++..+.....    ..+++++++.+.....
T Consensus        25 ~~~l~~V~DG~GG~~~g~~as~~~~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~gtt~~~~~~~~~  104 (235)
T d1txoa_          25 GARLLALADGMGGHAAGEVASQLVIAALAHLDDDEPGGDLLAKLDAAVRAGNSAIAAQVEMEPDLEGMGTTLTAILFAGN  104 (235)
T ss_dssp             CSSEEEEEEEECTTTHHHHHHHHHHHHHGGGGSSCCCSCHHHHHHHHHHHHHHHHHHHHHHCGGGTTCEECEEEEEEETT
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeeeeccc
Confidence            356899999999887777767777766654322  2344577888899888887754322    2344555555556655


Q ss_pred             cceEEEEEEEecCceEEEEeCCeeeeCCCCCC------------------------CCCCCCCCCCCCCccCCCceEEEE
Q psy12423        374 THRYMLHIASVGEAKAILCRQAGSLTFTHAPT------------------------LSPPVPPQGSCPLSFPDPHVTEVM  429 (567)
Q Consensus       374 ~~~~~l~~a~~Gdsr~~l~r~~~~~~lt~dh~------------------------~~r~~g~~~~~~~~~~~p~v~~~~  429 (567)
                          .+++||+||||+|++|+|+..++|+||+                        ++|++|      ....+|++..++
T Consensus       105 ----~l~~anvGDSr~~l~r~g~~~~lt~dH~~~~~~~~~g~~~~~~~~~~~~~~~lt~~~g------~~~~~pdi~~~~  174 (235)
T d1txoa_         105 ----RLGLVHIGDSRGYLLRDGELTQITKDDTFVQTLVDEGRITPEEAHSHPQRSLIMRALT------GHEVEPTLTMRE  174 (235)
T ss_dssp             ----EEEEEEESSCEEEEEETTEEEECSCCCBHHHHHHHTTSSCTTGGGGCTTTTCBCCCBS------SSCCCCEEEEEE
T ss_pred             ----eeEEEecCCccEEEecCCEEEEecCCCcHHHHhhhhcccchhhhhhccccchhhcccc------cccccceEEEEe
Confidence                8999999999999999999999999998                        233333      234689999999


Q ss_pred             ecCCCeEEEEEcCCCC---------------CHHHHHHHHHHHHHHcCCCCCcEEEEEEeC
Q psy12423        430 LHENDHFLILANKSVS---------------EPVLAAKRIQDLAQSYGSEDNLSVLVLRFQ  475 (567)
Q Consensus       430 l~~~d~~lil~sDGl~---------------~~~~~a~~l~~~a~~~g~~dnit~~vv~~~  475 (567)
                      +.++|. +||||||||               +++++|+.|++.|+++|+.||||||||+++
T Consensus       175 l~~~D~-llL~SDGl~d~l~~~ei~~i~~~~~~~~~a~~Lv~~A~~~gs~DNiTvivv~l~  234 (235)
T d1txoa_         175 ARAGDR-YLLCSDGLSDPVSDETILEALQIPEVAESAHRLIELALRGGGPDNVTVVVADLE  234 (235)
T ss_dssp             CCTTCE-EEEECHHHHTTSCHHHHHHHHTSSSHHHHHHHHHHHHHHTTCCSCEEEEEEEEE
T ss_pred             cCCCCE-EEEcCcchhcCCCHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCEEEEEEEEe
Confidence            999765 568999999               789999999999999999999999999985

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=3.4e-22  Score=194.73  Aligned_cols=197  Identities=29%  Similarity=0.315  Sum_probs=154.1

Q ss_pred             CccEEEecCCCCCCcc-ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccc
Q psy12423         83 ELTSVNLRSNQLKGTI-ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQ  158 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~  158 (567)
                      .+.+++.++++++.++ .+  .++|++|+|++|.|+.++   +..+                    ++|+.|++++|.++
T Consensus        11 ~~~~v~C~~~~L~~iP~~l--p~~l~~L~Ls~N~i~~l~~~~f~~l--------------------~~L~~L~L~~N~l~   68 (266)
T d1p9ag_          11 SHLEVNCDKRNLTALPPDL--PKDTTILHLSENLLYTFSLATLMPY--------------------TRLTQLNLDRAELT   68 (266)
T ss_dssp             TCCEEECTTSCCSSCCSCC--CTTCCEEECTTSCCSEEEGGGGTTC--------------------TTCCEEECTTSCCC
T ss_pred             CCeEEEccCCCCCeeCcCc--CcCCCEEECcCCcCCCcCHHHhhcc--------------------cccccccccccccc
Confidence            4444555555555433 12  134555555555555443   3333                    44555555555555


Q ss_pred             cccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhCC
Q psy12423        159 SLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQI  237 (567)
Q Consensus       159 ~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l  237 (567)
                      .++....+++|++|+|++|+++.++..+..+++|+.|++++|.+..++...+.. +.++++|++++|.++.+|. .+..+
T Consensus        69 ~l~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~-l~~l~~L~l~~n~l~~l~~~~~~~l  147 (266)
T d1p9ag_          69 KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG-LGELQELYLKGNELKTLPPGLLTPT  147 (266)
T ss_dssp             EEECCSCCTTCCEEECCSSCCSSCCCCTTTCTTCCEEECCSSCCCCCCSSTTTT-CTTCCEEECTTSCCCCCCTTTTTTC
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeecccccc-ccccccccccccccceecccccccc
Confidence            555444578899999999999998888999999999999999999988888776 8999999999999999876 46788


Q ss_pred             CCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecccCCccccCCc
Q psy12423        238 ASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDA  302 (567)
Q Consensus       238 ~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~  302 (567)
                      +.|+.|++++|+|+.+++..|..+++|++|+|++|+|+.||+.++.+..|..+.+.+|+|.|.|.
T Consensus       148 ~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~~lp~~~~~~~~L~~L~L~~Np~~CdC~  212 (266)
T d1p9ag_         148 PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCE  212 (266)
T ss_dssp             TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCCCSEEECCSCCBCCSGG
T ss_pred             ccchhcccccccccccCccccccccccceeecccCCCcccChhHCCCCCCCEEEecCCCCCCCcc
Confidence            99999999999999999998999999999999999999999999999999999998888876543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.88  E-value=1.3e-21  Score=194.38  Aligned_cols=243  Identities=18%  Similarity=0.216  Sum_probs=202.5

Q ss_pred             CcEEEccCCCCCcCCc-cCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCC
Q psy12423          1 LQEFRVDRNDLTEFPG-NQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPE   79 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~-~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~   79 (567)
                      |++|+|++|+|+++|+ +|.++++|++|++++|.+..+++..+.                                    
T Consensus        33 l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~------------------------------------   76 (305)
T d1xkua_          33 TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFA------------------------------------   76 (305)
T ss_dssp             CCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTT------------------------------------
T ss_pred             CCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhh------------------------------------
Confidence            6899999999999986 699999999999999999998765543                                    


Q ss_pred             CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCcccce------ecCCCCCcEE
Q psy12423         80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTL------VLNGSSLISV  150 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l------~~~~~~L~~L  150 (567)
                      .+++|++|++++|+++... ......+..|++..|.+..+.   +.....+..+....|.....      ...+++|+.+
T Consensus        77 ~l~~L~~L~l~~n~l~~l~-~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l  155 (305)
T d1xkua_          77 PLVKLERLYLSKNQLKELP-EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  155 (305)
T ss_dssp             TCTTCCEEECCSSCCSBCC-SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             CCCccCEecccCCccCcCc-cchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCcc
Confidence            3458899999999988654 234568899999999988875   44566778888887765433      2356789999


Q ss_pred             EcCCCccccccCCCCCCcccEEecccCCCCCc-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCC
Q psy12423        151 IAGNNKLQSLIVSPRPARLQHLDISYNELESL-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTS  229 (567)
Q Consensus       151 ~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~  229 (567)
                      .+++|.+..++.. .+++|+.|++++|.+... +..+..++.++.|++++|.+..++...+.. +++|++|+|++|+|+.
T Consensus       156 ~l~~n~l~~l~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~-l~~L~~L~L~~N~L~~  233 (305)
T d1xkua_         156 RIADTNITTIPQG-LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN-TPHLRELHLNNNKLVK  233 (305)
T ss_dssp             ECCSSCCCSCCSS-CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG-STTCCEEECCSSCCSS
T ss_pred             ccccCCccccCcc-cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccc-cccceeeecccccccc
Confidence            9999998876543 478999999999998854 568899999999999999999998887776 9999999999999999


Q ss_pred             CchhhhCCCCCcEEEccCCCCCCCchhhh------cCCCCCcEEEccCCcCC--CCCCCCc
Q psy12423        230 LPSLIRQIASLKYLFLQSNSINILPQLFL------QNSSKLKVLNISKNCLK--MLPSLQK  282 (567)
Q Consensus       230 lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l------~~l~~L~~L~Ls~N~l~--~ip~~~~  282 (567)
                      +|..+..+++|++|+|++|+|+.++...|      ..+++|+.|+|++|+++  .+|+..+
T Consensus       234 lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f  294 (305)
T d1xkua_         234 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF  294 (305)
T ss_dssp             CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred             cccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHh
Confidence            99999999999999999999999877654      45788999999999987  5555443

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.88  E-value=3.1e-23  Score=207.07  Aligned_cols=231  Identities=22%  Similarity=0.280  Sum_probs=122.9

Q ss_pred             cEEEccCCCCC---cCCccCCCCCCCCEEeCcC-CCCC-CCChhhhccCcCchhhhhhccchhhccccccccCCcccccC
Q psy12423          2 QEFRVDRNDLT---EFPGNQDSFPRLKFLSAAQ-NRIS-HLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERR   76 (567)
Q Consensus         2 ~~L~Ls~n~l~---~lp~~~~~l~~L~~L~Ls~-n~i~-~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~   76 (567)
                      ++|+|++|.++   .+|+++++|++|++|+|++ |.++ .+|+.+.                                  
T Consensus        53 ~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~----------------------------------   98 (313)
T d1ogqa_          53 NNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA----------------------------------   98 (313)
T ss_dssp             EEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGG----------------------------------
T ss_pred             EEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccc----------------------------------
Confidence            46777777666   4667777777777777765 5665 4665542                                  


Q ss_pred             CCCCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccCcccceec----CCCC-
Q psy12423         77 EPEVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRNQLKTLVL----NGSS-  146 (567)
Q Consensus        77 ~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n~l~~l~~----~~~~-  146 (567)
                         .+++|++|+|++|++.+..  .+..+..|+.+++++|.+...   .+..++.|+.+++++|.+....+    .+.. 
T Consensus        99 ---~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l  175 (313)
T d1ogqa_          99 ---KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL  175 (313)
T ss_dssp             ---GCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTT
T ss_pred             ---cccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccccc
Confidence               2456777777777776544  456667777777777765543   25566666677776666653321    2222 


Q ss_pred             CcEEEcCCCccccccCCCC-CCcccEEecccCCCC-CcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCC
Q psy12423        147 LISVIAGNNKLQSLIVSPR-PARLQHLDISYNELE-SLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF  224 (567)
Q Consensus       147 L~~L~l~~n~l~~~~~~~~-~~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~  224 (567)
                      ++.+.++.|++++..+..+ ...+..++++++.+. .+|..+..+++|+.+++++|.+...+..+..  +++|+.|+|++
T Consensus       176 ~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~--~~~L~~L~Ls~  253 (313)
T d1ogqa_         176 FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGL--SKNLNGLDLRN  253 (313)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGGCCC--CTTCCEEECCS
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccCcc
Confidence            2445555555554444333 223334445444443 3344444455555555555554433332221  44555555555


Q ss_pred             CCCC-CCchhhhCCCCCcEEEccCCCCC-CCchhhhcCCCCCcEEEccCCc
Q psy12423        225 NRLT-SLPSLIRQIASLKYLFLQSNSIN-ILPQLFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       225 N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l~~~~l~~l~~L~~L~Ls~N~  273 (567)
                      |+++ .+|..+..+++|++|+|++|+|+ .+|.  +.++++|+.+++++|+
T Consensus       254 N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~--~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ--GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             SCCEECCCGGGGGCTTCCEEECCSSEEEEECCC--STTGGGSCGGGTCSSS
T ss_pred             CeecccCChHHhCCCCCCEEECcCCcccccCCC--cccCCCCCHHHhCCCc
Confidence            5554 34555555555555555555554 3332  2344444445555544

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=2.1e-21  Score=190.87  Aligned_cols=214  Identities=28%  Similarity=0.323  Sum_probs=150.4

Q ss_pred             EEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCC
Q psy12423          3 EFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKG   82 (567)
Q Consensus         3 ~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~   82 (567)
                      .++.++++++++|..+.  +++++|+|++|+|+++|+..|.                                    .++
T Consensus        15 ~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~------------------------------------~l~   56 (284)
T d1ozna_          15 TTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFR------------------------------------ACR   56 (284)
T ss_dssp             EEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTT------------------------------------TCT
T ss_pred             EEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhh------------------------------------ccc
Confidence            34566666777765443  4567777777777766654432                                    233


Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEcc-CCCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCc
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVS-ENSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK  156 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~-~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~  156 (567)
                      +|++|++++|.+....  .+..+..+..+... .|.++.++   +..+++|                    +.|++++|.
T Consensus        57 ~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L--------------------~~L~l~~n~  116 (284)
T d1ozna_          57 NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRL--------------------HTLHLDRCG  116 (284)
T ss_dssp             TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTC--------------------CEEECTTSC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccchhhcccccC--------------------CEEecCCcc
Confidence            5666677776666544  44555566665543 34444442   3334444                    444455555


Q ss_pred             cccccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCC-ch
Q psy12423        157 LQSLIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSL-PS  232 (567)
Q Consensus       157 l~~~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~l-p~  232 (567)
                      +..+....+  +.+|+.+++++|.++.+| ..|..+++|+.|++++|.++.++...|.+ +++|+++++++|+++.+ |.
T Consensus       117 ~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~-l~~L~~l~l~~N~l~~i~~~  195 (284)
T d1ozna_         117 LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG-LHSLDRLLLHQNRVAHVHPH  195 (284)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTT-CTTCCEEECCSSCCCEECTT
T ss_pred             cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhcc-ccccchhhhhhccccccChh
Confidence            444444333  667888888888888885 46778888999999999998888888776 88999999999988875 56


Q ss_pred             hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        233 LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       233 ~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      .+..+++|++|++++|.+..+++..|..+++|+.|+|++|++.
T Consensus       196 ~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~  238 (284)
T d1ozna_         196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV  238 (284)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEE
T ss_pred             HhhhhhhcccccccccccccccccccccccccCEEEecCCCCC
Confidence            7888889999999999999998888888999999999999876

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.7e-21  Score=187.31  Aligned_cols=171  Identities=31%  Similarity=0.427  Sum_probs=100.0

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCcccc
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQS  159 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~  159 (567)
                      +|++|+|++|+|+...  .|.++++|++|+|++|+|+.++ ++.+++|++|++++|++...+                  
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~~------------------   93 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLP------------------   93 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSCC------------------
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccccccccccccccccccccccccccc------------------
Confidence            3445555555554433  3445555555555555555432 333444444444444433221                  


Q ss_pred             ccCCCC-CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch-hhhC
Q psy12423        160 LIVSPR-PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQ  236 (567)
Q Consensus       160 ~~~~~~-~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~  236 (567)
                        .... +++|+.|++++|.+..++ ..+..+.+++.|++++|.++.++...+.. +++|+.|++++|+|+.++. .+..
T Consensus        94 --~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~-l~~l~~l~l~~N~l~~~~~~~~~~  170 (266)
T d1p9ag_          94 --LLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP-TPKLEKLSLANNNLTELPAGLLNG  170 (266)
T ss_dssp             --CCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTT-CTTCCEEECTTSCCSCCCTTTTTT
T ss_pred             --cccccccccccccccccccceeeccccccccccccccccccccceeccccccc-cccchhcccccccccccCcccccc
Confidence              1111 345666666666666553 34556667777777777777776666654 6677777777777776654 4566


Q ss_pred             CCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        237 IASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       237 l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      +++|++|+|++|+|+.+|..++ .+++|+.|+|++|++.
T Consensus       171 l~~L~~L~Ls~N~L~~lp~~~~-~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         171 LENLDTLLLQENSLYTIPKGFF-GSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTT-TTCCCSEEECCSCCBC
T ss_pred             ccccceeecccCCCcccChhHC-CCCCCCEEEecCCCCC
Confidence            7777777777777777776654 5677777777777654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.86  E-value=4.6e-20  Score=185.84  Aligned_cols=259  Identities=27%  Similarity=0.343  Sum_probs=165.4

Q ss_pred             CcEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCC
Q psy12423          1 LQEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEV   80 (567)
Q Consensus         1 L~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~   80 (567)
                      |++|||++++++++|+.   .++|++|+|++|+|+++|..+ .+|+.|...             ++..+.++      ..
T Consensus        40 l~~LdLs~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~-~~L~~L~l~-------------~n~l~~l~------~l   96 (353)
T d1jl5a_          40 AHELELNNLGLSSLPEL---PPHLESLVASCNSLTELPELP-QSLKSLLVD-------------NNNLKALS------DL   96 (353)
T ss_dssp             CSEEECTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCC-TTCCEEECC-------------SSCCSCCC------SC
T ss_pred             CCEEEeCCCCCCCCCCC---CCCCCEEECCCCCCcccccch-hhhhhhhhh-------------hcccchhh------hh
Confidence            57999999999999964   468999999999999998654 456655543             22222222      11


Q ss_pred             CCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC---------------------CcccccCcEEEcccCcccc
Q psy12423         81 KGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD---------------------LGALNRLESIKCSRNQLKT  139 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~---------------------~~~l~~L~~L~ls~n~l~~  139 (567)
                      .+.|++|++++|.+.....++.+++|+.|++++|.+...+                     +..++.++.|.++.|.+..
T Consensus        97 p~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~~  176 (353)
T d1jl5a_          97 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLKK  176 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSS
T ss_pred             ccccccccccccccccccchhhhccceeeccccccccccccccccccchhhccccccccccccccccceecccccccccc
Confidence            2479999999999988777788999999999988765432                     2334566677777766555


Q ss_pred             eecCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccC-----------------CCcCCcEEECcCCCC
Q psy12423        140 LVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWID-----------------TCPELETIFASHNRI  202 (567)
Q Consensus       140 l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~-----------------~l~~L~~L~Ls~N~l  202 (567)
                      ..........+....+.+...+....++.|+.+++++|....++....                 ....+..+++..+.+
T Consensus       177 ~~~~~~~~~~l~~~~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  256 (353)
T d1jl5a_         177 LPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIF  256 (353)
T ss_dssp             CCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            443333334444444444433333335556666666655544432211                 112233333333322


Q ss_pred             C---CCChhhh------------hccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEE
Q psy12423        203 T---QLPSQFF------------CRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVL  267 (567)
Q Consensus       203 ~---~l~~~~~------------~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L  267 (567)
                      .   .++...+            ...+++|++|+|++|+|+.+|..   +++|+.|+|++|+|+.+|.    .+++|++|
T Consensus       257 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~---~~~L~~L~L~~N~L~~l~~----~~~~L~~L  329 (353)
T d1jl5a_         257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL---PPRLERLIASFNHLAEVPE----LPQNLKQL  329 (353)
T ss_dssp             SEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC----CCTTCCEE
T ss_pred             cccccccchhcccccccCccccccccCCCCCEEECCCCccCccccc---cCCCCEEECCCCcCCcccc----ccCCCCEE
Confidence            2   1111110            01156888888888888888753   5788888888888888875    35678888


Q ss_pred             EccCCcCCCCCCCCcCCcccee
Q psy12423        268 NISKNCLKMLPSLQKGFYLLNI  289 (567)
Q Consensus       268 ~Ls~N~l~~ip~~~~~~~~L~~  289 (567)
                      ++++|+|+.+|.....+..|++
T Consensus       330 ~L~~N~L~~lp~~~~~L~~L~~  351 (353)
T d1jl5a_         330 HVEYNPLREFPDIPESVEDLRM  351 (353)
T ss_dssp             ECCSSCCSSCCCCCTTCCEEEC
T ss_pred             ECcCCcCCCCCccccccCeeEC
Confidence            8888888888876666665554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=6.1e-20  Score=180.29  Aligned_cols=202  Identities=23%  Similarity=0.274  Sum_probs=155.5

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCCCCCcccccCcEEEcccCcccceecCCCCCcEEEc-CCCcccc
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIESLDLGALNRLESIKCSRNQLKTLVLNGSSLISVIA-GNNKLQS  159 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l-~~n~l~~  159 (567)
                      ++++|+|++|+|+...  .|.++++|++|++++|.+..++...+.                 ....+..+.. ..+.++.
T Consensus        33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~-----------------~~~~~~~l~~~~~~~~~~   95 (284)
T d1ozna_          33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFT-----------------GLALLEQLDLSDNAQLRS   95 (284)
T ss_dssp             TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-----------------TCTTCCEEECCSCTTCCC
T ss_pred             CCCEEECcCCcCCCCCHHHhhcccccccccccccccccccccccc-----------------cccccccccccccccccc
Confidence            4566677777666544  366666666666666666554322211                 1223334332 3455666


Q ss_pred             ccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCc-hhhh
Q psy12423        160 LIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIR  235 (567)
Q Consensus       160 ~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~  235 (567)
                      +.+..+  +++|++|++++|.+..++ ..+..+.+|+.+++++|.|+.++...|.. +++|+.|++++|+++.++ ..+.
T Consensus        96 l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~-~~~L~~L~l~~N~l~~l~~~~f~  174 (284)
T d1ozna_          96 VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD-LGNLTHLFLHGNRISSVPERAFR  174 (284)
T ss_dssp             CCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTT-CTTCCEEECCSSCCCEECTTTTT
T ss_pred             ccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhcc-ccchhhcccccCcccccchhhhc
Confidence            655555  789999999999998775 46778899999999999999999888876 889999999999999875 4678


Q ss_pred             CCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCC-CcCCccceeecccCCccccCCc
Q psy12423        236 QIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSL-QKGFYLLNISQLRLPGFCNSDA  302 (567)
Q Consensus       236 ~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~-~~~~~~L~~~~l~~~~~~~~~~  302 (567)
                      ++++|+.+++++|+++.+++..|..+++|++|++++|+++.+|+. +.++.+|...++..|.+.|.|.
T Consensus       175 ~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         175 GLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            999999999999999999988899999999999999999998865 4477788888888887776544

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.82  E-value=1.3e-20  Score=187.88  Aligned_cols=234  Identities=21%  Similarity=0.213  Sum_probs=184.6

Q ss_pred             CCCEEeCcCCCCCC---CChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecC-CCCCCcc
Q psy12423         23 RLKFLSAAQNRISH---LPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRS-NQLKGTI   98 (567)
Q Consensus        23 ~L~~L~Ls~n~i~~---lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~-n~l~~~~   98 (567)
                      +++.|+|++|.+..   +|+.+                                     ..+++|++|+|++ |++.+..
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l-------------------------------------~~L~~L~~L~Ls~~N~l~g~i   93 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSL-------------------------------------ANLPYLNFLYIGGINNLVGPI   93 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGG-------------------------------------GGCTTCSEEEEEEETTEESCC
T ss_pred             EEEEEECCCCCCCCCCCCChHH-------------------------------------hcCcccccccccccccccccc
Confidence            58888888888774   55544                                     3466899999986 7887643


Q ss_pred             --ccCCCCCccEEEccCCCCCCCC---CcccccCcEEEcccCccccee----cCCCCCcEEEcCCCccccccCCCC--CC
Q psy12423         99 --ILGNYGNLTTLDVSENSIESLD---LGALNRLESIKCSRNQLKTLV----LNGSSLISVIAGNNKLQSLIVSPR--PA  167 (567)
Q Consensus        99 --~l~~l~~L~~L~L~~n~l~~~~---~~~l~~L~~L~ls~n~l~~l~----~~~~~L~~L~l~~n~l~~~~~~~~--~~  167 (567)
                        .++++++|++|+|++|++..+.   +..+.+|+.++++.|.+....    ..++.++.+++++|.+.+..+..+  +.
T Consensus        94 P~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~  173 (313)
T d1ogqa_          94 PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS  173 (313)
T ss_dssp             CGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC
T ss_pred             ccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecccccccccccccccccc
Confidence              6889999999999999988753   667788999999999876543    457889999999999887655544  33


Q ss_pred             c-ccEEecccCCCCC-cccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEc
Q psy12423        168 R-LQHLDISYNELES-LPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL  245 (567)
Q Consensus       168 ~-L~~L~Ls~n~l~~-lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  245 (567)
                      . ++.+++++|+++. .|..+..+.. ..++++.+.+....+..+.. +++|+.+++++|.+...+..+..+++|+.|+|
T Consensus       174 ~l~~~l~~~~n~l~~~~~~~~~~l~~-~~l~l~~~~~~~~~~~~~~~-~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~L  251 (313)
T d1ogqa_         174 KLFTSMTISRNRLTGKIPPTFANLNL-AFVDLSRNMLEGDASVLFGS-DKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDL  251 (313)
T ss_dssp             TTCCEEECCSSEEEEECCGGGGGCCC-SEEECCSSEEEECCGGGCCT-TSCCSEEECCSSEECCBGGGCCCCTTCCEEEC
T ss_pred             cccccccccccccccccccccccccc-cccccccccccccccccccc-cccccccccccccccccccccccccccccccC
Confidence            4 5889999999884 4556665544 47899988877544444433 88999999999999987777888999999999


Q ss_pred             cCCCCC-CCchhhhcCCCCCcEEEccCCcCC-CCCCCCcCCccceeecccCCcc
Q psy12423        246 QSNSIN-ILPQLFLQNSSKLKVLNISKNCLK-MLPSLQKGFYLLNISQLRLPGF  297 (567)
Q Consensus       246 s~N~l~-~l~~~~l~~l~~L~~L~Ls~N~l~-~ip~~~~~~~~L~~~~l~~~~~  297 (567)
                      ++|+++ .+|.. +.++++|++|+|++|+|+ .||. ...+.+|....+.+|.+
T Consensus       252 s~N~l~g~iP~~-l~~L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~~  303 (313)
T d1ogqa_         252 RNNRIYGTLPQG-LTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC  303 (313)
T ss_dssp             CSSCCEECCCGG-GGGCTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSSE
T ss_pred             ccCeecccCChH-HhCCCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCcc
Confidence            999999 67765 579999999999999999 8885 46788888888887764

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=9.4e-19  Score=165.79  Aligned_cols=182  Identities=19%  Similarity=0.304  Sum_probs=118.7

Q ss_pred             CccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCccccee--cCCCCCcEEEcCCCcccc
Q psy12423         83 ELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQS  159 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~  159 (567)
                      +|++|++.+|+++....+..+++|++|++++|.++.+ ++..+++|+++++++|.++.+.  ..+++|+.+.++.+....
T Consensus        42 ~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~~l~~l~~L~~l~l~~~~~~~  121 (227)
T d1h6ua2          42 GITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITD  121 (227)
T ss_dssp             TCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECTTSCCCC
T ss_pred             CcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccccccccccccccccccccccc
Confidence            3444444444444333344444444444444444443 2444444444444444444332  234555555555555555


Q ss_pred             ccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCC
Q psy12423        160 LIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIAS  239 (567)
Q Consensus       160 ~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  239 (567)
                      .......+.+..+.++++.+...+. +..+++|+.|++++|.+..++.  +.. +++|+.|+|++|++++++. +..+++
T Consensus       122 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~--l~~-l~~L~~L~Ls~n~l~~l~~-l~~l~~  196 (227)
T d1h6ua2         122 VTPLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSDLTP--LAN-LSKLTTLKADDNKISDISP-LASLPN  196 (227)
T ss_dssp             CGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCCCGG-GGGCTT
T ss_pred             cchhccccchhhhhchhhhhchhhh-hccccccccccccccccccchh--hcc-cccceecccCCCccCCChh-hcCCCC
Confidence            5444446678888888888776543 5677889999999998886654  333 8899999999999988865 778899


Q ss_pred             CcEEEccCCCCCCCchhhhcCCCCCcEEEccC
Q psy12423        240 LKYLFLQSNSINILPQLFLQNSSKLKVLNISK  271 (567)
Q Consensus       240 L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~  271 (567)
                      |++|+|++|+|+++++  ++++++|+.|++++
T Consensus       197 L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         197 LIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             CCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             CCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            9999999999998886  67899999999874

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.79  E-value=1.4e-18  Score=164.51  Aligned_cols=200  Identities=17%  Similarity=0.262  Sum_probs=163.5

Q ss_pred             cEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee--cCCCCCcEEEcCCCcccccc
Q psy12423         85 TSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLI  161 (567)
Q Consensus        85 ~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~  161 (567)
                      ..++++.+++++...+..+.+|+.|++.+|.|+.++ +..+++|++|++++|.+..+.  ..+++++.+.+++|.++.+.
T Consensus        22 ~~~~l~~~~~~d~~~~~~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i~  101 (227)
T d1h6ua2          22 IKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS  101 (227)
T ss_dssp             HHHHTTCSSTTSEECHHHHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCCG
T ss_pred             HHHHhCCCCcCCcCCHHHcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeeccccccccccccccccccccccccc
Confidence            345566777777666677889999999999998874 788999999999999998775  56789999999999998877


Q ss_pred             CCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCc
Q psy12423        162 VSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLK  241 (567)
Q Consensus       162 ~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~  241 (567)
                      ....+++|+.++++++....++. +...+.++.+.++.+.+.......  . +++|+.|++++|.+..++. +..+++|+
T Consensus       102 ~l~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~--~-~~~L~~L~l~~n~~~~~~~-l~~l~~L~  176 (227)
T d1h6ua2         102 AIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNISPLA--G-LTNLQYLSIGNAQVSDLTP-LANLSKLT  176 (227)
T ss_dssp             GGTTCTTCCEEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGG--G-CTTCCEEECCSSCCCCCGG-GTTCTTCC
T ss_pred             cccccccccccccccccccccch-hccccchhhhhchhhhhchhhhhc--c-ccccccccccccccccchh-hcccccce
Confidence            65568899999999998877654 567788999999999888665422  2 7889999999999887655 78899999


Q ss_pred             EEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccceeecc
Q psy12423        242 YLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLNISQL  292 (567)
Q Consensus       242 ~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~~~~l  292 (567)
                      .|+|++|+++++++  +.++++|++|+|++|+|+.+|+ +.++.+|..+++
T Consensus       177 ~L~Ls~n~l~~l~~--l~~l~~L~~L~Ls~N~lt~i~~-l~~l~~L~~L~l  224 (227)
T d1h6ua2         177 TLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP-LANTSNLFIVTL  224 (227)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG-GTTCTTCCEEEE
T ss_pred             ecccCCCccCCChh--hcCCCCCCEEECcCCcCCCCcc-cccCCCCCEEEe
Confidence            99999999999876  6789999999999999999884 456666666554

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-18  Score=166.39  Aligned_cols=216  Identities=18%  Similarity=0.217  Sum_probs=139.9

Q ss_pred             cEEEccCCCCCcCCccCCCCCCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCC
Q psy12423          2 QEFRVDRNDLTEFPGNQDSFPRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVK   81 (567)
Q Consensus         2 ~~L~Ls~n~l~~lp~~~~~l~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l   81 (567)
                      +.++.++.+++++|+.+.  +++++|+|++|+|+.+|...|.                                    .+
T Consensus        11 ~~i~c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~------------------------------------~l   52 (242)
T d1xwdc1          11 RVFLCQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFS------------------------------------GF   52 (242)
T ss_dssp             SEEEEESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTT------------------------------------TC
T ss_pred             CEEEEeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhh------------------------------------cc
Confidence            456677777778876553  4678888888888777755432                                    34


Q ss_pred             CCccEEEecCCCCCCcc---ccCCCCCccEEEccC-CCCCCCC---CcccccCcEEEcccCcccceecCCCCCcEEEcCC
Q psy12423         82 GELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSE-NSIESLD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGN  154 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~-n~l~~~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~  154 (567)
                      ++|++|++++|.+....   .|..++++++|.+.. |.+...+   +..+++|+.|++++|.+..               
T Consensus        53 ~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~---------------  117 (242)
T d1xwdc1          53 GDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKH---------------  117 (242)
T ss_dssp             TTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEEEESCCCCS---------------
T ss_pred             chhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccccchhhhcc---------------
Confidence            46777788877776533   456677777776653 4555443   3445555555555555443               


Q ss_pred             CccccccCCCC---CCcccEEecccCCCCCcc-cccCCCc-CCcEEECcCCCCCCCChhhhhccCCCccEE-ECCCCCCC
Q psy12423        155 NKLQSLIVSPR---PARLQHLDISYNELESLP-DWIDTCP-ELETIFASHNRITQLPSQFFCRELGKLHTL-QLSFNRLT  228 (567)
Q Consensus       155 n~l~~~~~~~~---~~~L~~L~Ls~n~l~~lp-~~l~~l~-~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L-~Ls~N~l~  228 (567)
                           .+....   +..+..+...++.+..++ ..+..++ .++.|++++|+++.++...|.  ..+++.+ ++++|+|+
T Consensus       118 -----~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~--~~~l~~~~~l~~n~l~  190 (242)
T d1xwdc1         118 -----LPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN--GTQLDELNLSDNNNLE  190 (242)
T ss_dssp             -----CCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT--TCCEEEEECTTCTTCC
T ss_pred             -----cccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc--chhhhccccccccccc
Confidence                 222222   344555556666676664 3454443 677888888888888777765  4555544 46677888


Q ss_pred             CCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        229 SLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       229 ~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      .+|. .+.++++|++|+|++|+|+.+|+..|.+++.|+.+++  +.++.+|+
T Consensus       191 ~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~--~~l~~lp~  240 (242)
T d1xwdc1         191 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLPT  240 (242)
T ss_dssp             CCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE--ESSSCSCC
T ss_pred             cccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC--CCCCcCCC
Confidence            8876 4677888888888888888888877777777766555  34567764

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.75  E-value=5.6e-18  Score=158.41  Aligned_cols=163  Identities=23%  Similarity=0.352  Sum_probs=101.6

Q ss_pred             CCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccc
Q psy12423         82 GELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSL  160 (567)
Q Consensus        82 ~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~  160 (567)
                      .+|++|++++|.++....+..+++|++|++++|.++.++ ++.+++                    |+.|++++|+++.+
T Consensus        46 ~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l~~~~~l~~--------------------L~~L~l~~n~i~~l  105 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIKPLANLKN--------------------LGWLFLDENKVKDL  105 (210)
T ss_dssp             HTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTT--------------------CCEEECCSSCCCCG
T ss_pred             cCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCccccccCcc--------------------cccccccccccccc
Confidence            345555555555554444445555555555555554432 333344                    44444444444444


Q ss_pred             cCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCC
Q psy12423        161 IVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASL  240 (567)
Q Consensus       161 ~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L  240 (567)
                      +....+++|+.|++++|.+..++ .+..++.|+.+++++|.++.++...  . +++|+.+++++|++++++. +..+++|
T Consensus       106 ~~l~~l~~L~~L~l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~~~~~--~-l~~L~~l~l~~n~l~~i~~-l~~l~~L  180 (210)
T d1h6ta2         106 SSLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYLGNNKITDITVLS--R-LTKLDTLSLEDNQISDIVP-LAGLTKL  180 (210)
T ss_dssp             GGGTTCTTCCEEECTTSCCCCCG-GGGGCTTCCEEECCSSCCCCCGGGG--G-CTTCSEEECCSSCCCCCGG-GTTCTTC
T ss_pred             ccccccccccccccccccccccc-ccccccccccccccccccccccccc--c-ccccccccccccccccccc-ccCCCCC
Confidence            43333567777777777776664 3667777888888888777654322  2 7778888888888777654 6677788


Q ss_pred             cEEEccCCCCCCCchhhhcCCCCCcEEEccC
Q psy12423        241 KYLFLQSNSINILPQLFLQNSSKLKVLNISK  271 (567)
Q Consensus       241 ~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~  271 (567)
                      +.|+|++|+|+.++.  +.++++|++|+|++
T Consensus       181 ~~L~Ls~N~i~~l~~--l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         181 QNLYLSKNHISDLRA--LAGLKNLDVLELFS  209 (210)
T ss_dssp             CEEECCSSCCCBCGG--GTTCTTCSEEEEEE
T ss_pred             CEEECCCCCCCCChh--hcCCCCCCEEEccC
Confidence            888888888877764  56778888887764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.74  E-value=2.1e-17  Score=153.04  Aligned_cols=171  Identities=23%  Similarity=0.349  Sum_probs=76.3

Q ss_pred             ecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCccccee--cCCCCCcEEEcCCCccccccCCCC
Q psy12423         89 LRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNKLQSLIVSPR  165 (567)
Q Consensus        89 Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~l~~~~~~~~  165 (567)
                      ++.+.+++......+.+|++|++++|.++.++ +..+++|++|++++|+++.+.  ..+++|+.|++++|.+..++....
T Consensus        25 l~~~~~~~~~~~~~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~  104 (199)
T d2omxa2          25 LGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLAN  104 (199)
T ss_dssp             TTCSSTTSEECHHHHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTT
T ss_pred             hCCCCCCCccCHHHhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCccccccccccccccccccccc
Confidence            33344443333333445555555555555442 444445555554444444332  122233333333333333222222


Q ss_pred             CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEc
Q psy12423        166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL  245 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  245 (567)
                      +++|+.|++++|.+..++ .+..+++|+.|++++|++..++. +. . +++|+.|++++|+++.++. +.++++|++|++
T Consensus       105 l~~L~~L~l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~-l~-~-~~~L~~L~l~~n~l~~l~~-l~~l~~L~~L~l  179 (199)
T d2omxa2         105 LTNLTGLTLFNNQITDID-PLKNLTNLNRLELSSNTISDISA-LS-G-LTSLQQLNFSSNQVTDLKP-LANLTTLERLDI  179 (199)
T ss_dssp             CTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG-GT-T-CTTCSEEECCSSCCCCCGG-GTTCTTCCEEEC
T ss_pred             cccccccccccccccccc-ccchhhhhHHhhhhhhhhccccc-cc-c-cccccccccccccccCCcc-ccCCCCCCEEEC
Confidence            344555555555444432 24445555555555555544432 11 1 4455555555555555432 445555555555


Q ss_pred             cCCCCCCCchhhhcCCCCCcE
Q psy12423        246 QSNSINILPQLFLQNSSKLKV  266 (567)
Q Consensus       246 s~N~l~~l~~~~l~~l~~L~~  266 (567)
                      ++|+|++++.  +..+++|+.
T Consensus       180 s~N~i~~i~~--l~~L~~L~~  198 (199)
T d2omxa2         180 SSNKVSDISV--LAKLTNLES  198 (199)
T ss_dssp             CSSCCCCCGG--GGGCTTCSE
T ss_pred             CCCCCCCCcc--ccCCCCCCc
Confidence            5555555442  344455544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.72  E-value=6.4e-16  Score=154.97  Aligned_cols=243  Identities=28%  Similarity=0.294  Sum_probs=163.0

Q ss_pred             CCCCEEeCcCCCCCCCChhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecCCCCCCccccC
Q psy12423         22 PRLKFLSAAQNRISHLPVFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRSNQLKGTIILG  101 (567)
Q Consensus        22 ~~L~~L~Ls~n~i~~lp~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~~l~  101 (567)
                      .+|+.|||++|.++++|+.. .+++.|.                ...+.+...   +..+.+|+.|++++|+++....+ 
T Consensus        38 ~~l~~LdLs~~~L~~lp~~~-~~L~~L~----------------Ls~N~l~~l---p~~~~~L~~L~l~~n~l~~l~~l-   96 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLPELP-PHLESLV----------------ASCNSLTEL---PELPQSLKSLLVDNNNLKALSDL-   96 (353)
T ss_dssp             HTCSEEECTTSCCSCCCSCC-TTCSEEE----------------CCSSCCSSC---CCCCTTCCEEECCSSCCSCCCSC-
T ss_pred             cCCCEEEeCCCCCCCCCCCC-CCCCEEE----------------CCCCCCccc---ccchhhhhhhhhhhcccchhhhh-
Confidence            36999999999999999643 2344332                222233322   23456899999999998865433 


Q ss_pred             CCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCC
Q psy12423        102 NYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELE  180 (567)
Q Consensus       102 ~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~  180 (567)
                       .+.|++|++++|.+..++ ++.+++|+.|++++|.+...+.....+..+.+..+..........++.++.|++++|.+.
T Consensus        97 -p~~L~~L~L~~n~l~~lp~~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~l~~l~~l~~L~l~~n~~~  175 (353)
T d1jl5a_          97 -PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  175 (353)
T ss_dssp             -CTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             -ccccccccccccccccccchhhhccceeeccccccccccccccccccchhhccccccccccccccccceeccccccccc
Confidence             246999999999999874 677899999999999988777666677777776665555444444566666666666543


Q ss_pred             C--------------------cccccCCCcCCcEEECcCCCCCCCChhhhh---------------ccCCCccEEECCCC
Q psy12423        181 S--------------------LPDWIDTCPELETIFASHNRITQLPSQFFC---------------RELGKLHTLQLSFN  225 (567)
Q Consensus       181 ~--------------------lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~---------------~~l~~L~~L~Ls~N  225 (567)
                      .                    ++. +..++.|+.+++++|....++.....               ..+..+..+++..+
T Consensus       176 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~l~~L~~l~l~~n~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~  254 (353)
T d1jl5a_         176 KLPDLPLSLESIVAGNNILEELPE-LQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSEN  254 (353)
T ss_dssp             SCCCCCTTCCEEECCSSCCSSCCC-CTTCTTCCEEECCSSCCSSCCSCCTTCCEEECCSSCCSCCCCCCTTCCEEECCSS
T ss_pred             cccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            2                    222 45678899999999887766542210               00223344444433


Q ss_pred             CCCC---Cch--------------hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCCcCCccce
Q psy12423        226 RLTS---LPS--------------LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQKGFYLLN  288 (567)
Q Consensus       226 ~l~~---lp~--------------~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~~~~~~L~  288 (567)
                      .+..   ++.              ....+++|++|+|++|+|+.+|.    .+++|+.|+|++|+|+.||....++..|.
T Consensus       255 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~lp~----~~~~L~~L~L~~N~L~~l~~~~~~L~~L~  330 (353)
T d1jl5a_         255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPA----LPPRLERLIASFNHLAEVPELPQNLKQLH  330 (353)
T ss_dssp             CCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCCCCTTCCEEE
T ss_pred             cccccccccchhcccccccCccccccccCCCCCEEECCCCccCcccc----ccCCCCEEECCCCcCCccccccCCCCEEE
Confidence            3221   111              11235789999999999999985    46899999999999999997655555555


Q ss_pred             eec
Q psy12423        289 ISQ  291 (567)
Q Consensus       289 ~~~  291 (567)
                      +..
T Consensus       331 L~~  333 (353)
T d1jl5a_         331 VEY  333 (353)
T ss_dssp             CCS
T ss_pred             CcC
Confidence            443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.9e-17  Score=151.88  Aligned_cols=146  Identities=25%  Similarity=0.314  Sum_probs=109.9

Q ss_pred             CCCCCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCCC-CcccccCcEEEcccCcccceecCCCCCcEEEcCCC
Q psy12423         77 EPEVKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESLD-LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNN  155 (567)
Q Consensus        77 ~~~~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n  155 (567)
                      .+..+++|++|+|++|++++...+..+++|+.|++++|+++.++ +..+++|+.|++++|.+..+.              
T Consensus        63 ~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~~~~~~~~--------------  128 (210)
T d1h6ta2          63 GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDIN--------------  128 (210)
T ss_dssp             TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECTTSCCCCCG--------------
T ss_pred             hHhhCCCCCEEeCCCccccCccccccCccccccccccccccccccccccccccccccccccccccc--------------
Confidence            35678999999999999999888899999999999999999874 667777888777777654432              


Q ss_pred             ccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhh
Q psy12423        156 KLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIR  235 (567)
Q Consensus       156 ~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~  235 (567)
                            ....+++++.+++++|.++.++ .+..+++|+.+++++|+++.++.  +.. +++|++|+|++|+|+++| .+.
T Consensus       129 ------~l~~l~~l~~l~~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~i~~--l~~-l~~L~~L~Ls~N~i~~l~-~l~  197 (210)
T d1h6ta2         129 ------GLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTLSLEDNQISDIVP--LAG-LTKLQNLYLSKNHISDLR-ALA  197 (210)
T ss_dssp             ------GGGGCTTCCEEECCSSCCCCCG-GGGGCTTCSEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCBCG-GGT
T ss_pred             ------cccccccccccccccccccccc-ccccccccccccccccccccccc--ccC-CCCCCEEECCCCCCCCCh-hhc
Confidence                  2222456777777777776554 35667778888888888777654  222 778888888888888776 477


Q ss_pred             CCCCCcEEEccC
Q psy12423        236 QIASLKYLFLQS  247 (567)
Q Consensus       236 ~l~~L~~L~Ls~  247 (567)
                      .+++|++|+|++
T Consensus       198 ~l~~L~~L~Ls~  209 (210)
T d1h6ta2         198 GLKNLDVLELFS  209 (210)
T ss_dssp             TCTTCSEEEEEE
T ss_pred             CCCCCCEEEccC
Confidence            788888888764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=6.4e-17  Score=154.31  Aligned_cols=191  Identities=19%  Similarity=0.254  Sum_probs=140.7

Q ss_pred             CccEEEecCCCCCCcc--ccCCCCCccEEEccCCCCCC-CC---CcccccCcEEEcccCcccceecCCCCCcEEEcCCCc
Q psy12423         83 ELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSENSIES-LD---LGALNRLESIKCSRNQLKTLVLNGSSLISVIAGNNK  156 (567)
Q Consensus        83 ~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n~l~~-~~---~~~l~~L~~L~ls~n~l~~l~~~~~~L~~L~l~~n~  156 (567)
                      ++++|+|++|.|+...  .|.++++|++|++++|.+.. ++   +..++++++|.+..                   .|.
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~-------------------~n~   90 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK-------------------ANN   90 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC-------------------CTT
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc-------------------ccc
Confidence            6777788887777544  46777777777777777654 22   34455555554432                   234


Q ss_pred             cccccCCCC--CCcccEEecccCCCCCccc--ccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCch
Q psy12423        157 LQSLIVSPR--PARLQHLDISYNELESLPD--WIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPS  232 (567)
Q Consensus       157 l~~~~~~~~--~~~L~~L~Ls~n~l~~lp~--~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~  232 (567)
                      +....+..+  +++|++|++++|.+..++.  .+..+..+..+...++.+..++...|.+....++.|++++|+++.++.
T Consensus        91 l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~  170 (242)
T d1xwdc1          91 LLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN  170 (242)
T ss_dssp             CCEECTTSEECCTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECT
T ss_pred             ccccccccccccccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccc
Confidence            444444444  6799999999999987754  445667777778888899988887776523589999999999999887


Q ss_pred             hhhCCCCCcEE-EccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCCCC-cCCccceeecc
Q psy12423        233 LIRQIASLKYL-FLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPSLQ-KGFYLLNISQL  292 (567)
Q Consensus       233 ~~~~l~~L~~L-~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~~~-~~~~~L~~~~l  292 (567)
                      ......++..+ ++.+|.|+.+|...|.++++|++|+|++|+|+.+|... .++..|+..++
T Consensus       171 ~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         171 CAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred             ccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence            66566666655 57888999999999999999999999999999998753 46666666554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.70  E-value=1.2e-16  Score=147.90  Aligned_cols=159  Identities=21%  Similarity=0.304  Sum_probs=139.3

Q ss_pred             CCCCccEEEecCCCCCCccccCCCCCccEEEccCCCCCCC-CCcccccCcEEEcccCccccee--cCCCCCcEEEcCCCc
Q psy12423         80 VKGELTSVNLRSNQLKGTIILGNYGNLTTLDVSENSIESL-DLGALNRLESIKCSRNQLKTLV--LNGSSLISVIAGNNK  156 (567)
Q Consensus        80 ~l~~L~~L~Ls~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~l~~L~~L~ls~n~l~~l~--~~~~~L~~L~l~~n~  156 (567)
                      .+.++++|++++|.++....+..+++|++|++++|+++.+ ++..+++|++|++++|.+..+.  ..++.|+.|++++|.
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~~~~  117 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQ  117 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECCSSC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCcccccCCcccccccccccccccccccccccccccccccccc
Confidence            3568999999999999877788899999999999999987 4888999999999999988775  467899999999999


Q ss_pred             cccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhC
Q psy12423        157 LQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQ  236 (567)
Q Consensus       157 l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  236 (567)
                      +........+++|+.|++++|.+..++ .+..+++|+.|++.+|+++.++.  +.. +++|++|++++|++++++. +..
T Consensus       118 ~~~~~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~l~~--l~~-l~~L~~L~ls~N~i~~i~~-l~~  192 (199)
T d2omxa2         118 ITDIDPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTDLKP--LAN-LTTLERLDISSNKVSDISV-LAK  192 (199)
T ss_dssp             CCCCGGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCCCGG--GTT-CTTCCEEECCSSCCCCCGG-GGG
T ss_pred             cccccccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccCCcc--ccC-CCCCCEEECCCCCCCCCcc-ccC
Confidence            888776555899999999999998876 48899999999999999999875  333 8999999999999999874 788


Q ss_pred             CCCCcEE
Q psy12423        237 IASLKYL  243 (567)
Q Consensus       237 l~~L~~L  243 (567)
                      +++|+.|
T Consensus       193 L~~L~~L  199 (199)
T d2omxa2         193 LTNLESL  199 (199)
T ss_dssp             CTTCSEE
T ss_pred             CCCCCcC
Confidence            9999876

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.63  E-value=8.3e-16  Score=141.25  Aligned_cols=129  Identities=20%  Similarity=0.231  Sum_probs=87.4

Q ss_pred             cEEEcCCCccccccCCCCCCcccEEecccCCCCC-c-ccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC
Q psy12423        148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELES-L-PDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN  225 (567)
Q Consensus       148 ~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~-l-p~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N  225 (567)
                      +.++++++.++.++.. +++++++|+|++|.|+. + +..|..+++|+.|+|++|.+..++...|.. +++|++|+|++|
T Consensus        11 ~~v~Cs~~~L~~iP~~-lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~-~~~L~~L~Ls~N   88 (192)
T d1w8aa_          11 TTVDCTGRGLKEIPRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEG-ASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTT-CTTCCEEECCSC
T ss_pred             CEEEEeCCCcCccCCC-CCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccc-ccccceeeeccc
Confidence            3455555555555432 34567777777777764 3 235667777777777777777776666655 677777777777


Q ss_pred             CCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCC
Q psy12423        226 RLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLKVLNISKNCLKMLP  278 (567)
Q Consensus       226 ~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip  278 (567)
                      +|+.+|. .|.++++|++|+|++|+|+.+++..|..+++|++|+|++|++...+
T Consensus        89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~  142 (192)
T d1w8aa_          89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNC  142 (192)
T ss_dssp             CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSG
T ss_pred             cccccCHHHHhCCCcccccccCCccccccCHHHhcCCccccccccccccccccc
Confidence            7777654 4677777777777777777777777777777777777777766443

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.59  E-value=9e-16  Score=141.01  Aligned_cols=165  Identities=19%  Similarity=0.274  Sum_probs=93.5

Q ss_pred             EEEcccCcccceecCC-CCCcEEEcCCCcccc-ccCCCC--CCcccEEecccCCCCCcc-cccCCCcCCcEEECcCCCCC
Q psy12423        129 SIKCSRNQLKTLVLNG-SSLISVIAGNNKLQS-LIVSPR--PARLQHLDISYNELESLP-DWIDTCPELETIFASHNRIT  203 (567)
Q Consensus       129 ~L~ls~n~l~~l~~~~-~~L~~L~l~~n~l~~-~~~~~~--~~~L~~L~Ls~n~l~~lp-~~l~~l~~L~~L~Ls~N~l~  203 (567)
                      .+++++++++.++... .++++|++++|.|+. +....+  +++|+.|+|++|.+..++ ..+..+++|++|+|++|+|+
T Consensus        12 ~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~   91 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK   91 (192)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC
T ss_pred             EEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc
Confidence            3444444444444332 245555555555543 222332  566777777777776553 45666777777777777777


Q ss_pred             CCChhhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCchh-hhcCCCCCcEEEccCCcCC-CCCCC
Q psy12423        204 QLPSQFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQL-FLQNSSKLKVLNISKNCLK-MLPSL  280 (567)
Q Consensus       204 ~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~-~l~~l~~L~~L~Ls~N~l~-~ip~~  280 (567)
                      .++...|.+ +++|++|+|++|+|+.+|. .|..+++|++|+|++|.+...... .+  ...++.+.+..|.++ ..|..
T Consensus        92 ~l~~~~F~~-l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~--~~~l~~~~l~~~~~~c~~p~~  168 (192)
T d1w8aa_          92 EISNKMFLG-LHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF--AEWLRKKSLNGGAARCGAPSK  168 (192)
T ss_dssp             EECSSSSTT-CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH--HHHHHHHCCSGGGCBBCSSTT
T ss_pred             ccCHHHHhC-CCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH--hhhhhhhcccCCCeEeCCChh
Confidence            777666665 7777777777777777644 456677777777777776643321 11  122444455566655 34432


Q ss_pred             CcCCccceeecccCCcccc
Q psy12423        281 QKGFYLLNISQLRLPGFCN  299 (567)
Q Consensus       281 ~~~~~~L~~~~l~~~~~~~  299 (567)
                         +..+.+.++..+.|.|
T Consensus       169 ---l~~~~l~~L~~n~l~C  184 (192)
T d1w8aa_         169 ---VRDVQIKDLPHSEFKC  184 (192)
T ss_dssp             ---TTTSBGGGSCTTTCCC
T ss_pred             ---hcCCEeeecCHhhCcC
Confidence               3334555555555543

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=5.6e-15  Score=125.24  Aligned_cols=106  Identities=25%  Similarity=0.303  Sum_probs=86.8

Q ss_pred             cEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEccCCC
Q psy12423        170 QHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFLQSNS  249 (567)
Q Consensus       170 ~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~  249 (567)
                      +.|+|++|+++.++. +..+++|++|++++|+|+.+|..+..  +++|+.|++++|.|+.+|. +..+++|++|++++|+
T Consensus         1 R~L~Ls~n~l~~l~~-l~~l~~L~~L~ls~N~l~~lp~~~~~--l~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~l~~N~   76 (124)
T d1dcea3           1 RVLHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAA--LRCLEVLQASDNALENVDG-VANLPRLQELLLCNNR   76 (124)
T ss_dssp             SEEECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGG--CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSC
T ss_pred             CEEEcCCCCCCCCcc-cccCCCCCEEECCCCccCcchhhhhh--hhcccccccccccccccCc-cccccccCeEECCCCc
Confidence            468888888888875 78888889999999998888876543  8889999999998888864 7788889999999998


Q ss_pred             CCCCch-hhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        250 INILPQ-LFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       250 l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      |+.++. ..+..+++|+.|++++|+++.++.
T Consensus        77 i~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~  107 (124)
T d1dcea3          77 LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG  107 (124)
T ss_dssp             CCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred             cCCCCCchhhcCCCCCCEEECCCCcCCcCcc
Confidence            887764 456788889999999998876653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=8.5e-15  Score=130.31  Aligned_cols=121  Identities=21%  Similarity=0.246  Sum_probs=69.1

Q ss_pred             CCcEEEcCCCccccccCCCC-CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCC
Q psy12423        146 SLISVIAGNNKLQSLIVSPR-PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSF  224 (567)
Q Consensus       146 ~L~~L~l~~n~l~~~~~~~~-~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~  224 (567)
                      ++++|++++|+++.++.... +++|+.|+|++|.|++++ .+..+++|++|++++|+++.++..++.. +++|+.|++++
T Consensus        19 ~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~-l~~L~~L~L~~   96 (162)
T d1a9na_          19 RDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLD-GFPLLRRLKTLLVNNNRICRIGEGLDQA-LPDLTELILTN   96 (162)
T ss_dssp             SCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEEC-CCCCCSSCCEEECCSSCCCEECSCHHHH-CTTCCEEECCS
T ss_pred             cCcEEECCCCCCCccCccccccccCCEEECCCCCCCccC-CcccCcchhhhhcccccccCCCcccccc-ccccccceecc
Confidence            44444555555444432211 456666666666666653 3556666666666666666666555543 66666666666


Q ss_pred             CCCCCCch--hhhCCCCCcEEEccCCCCCCCch---hhhcCCCCCcEEE
Q psy12423        225 NRLTSLPS--LIRQIASLKYLFLQSNSINILPQ---LFLQNSSKLKVLN  268 (567)
Q Consensus       225 N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~---~~l~~l~~L~~L~  268 (567)
                      |+|+.++.  .+..+++|++|++++|.++..|.   .++..+++|+.||
T Consensus        97 N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          97 NSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            66666543  35566666666666666665553   2345566666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.2e-14  Score=121.48  Aligned_cols=117  Identities=24%  Similarity=0.254  Sum_probs=97.9

Q ss_pred             cEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCC
Q psy12423        148 ISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRL  227 (567)
Q Consensus       148 ~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l  227 (567)
                      +.|++++|.++.++....+.+|++|++++|.|+.+|..+..+++|+.|++++|.|+.+|. + .. +++|+.|++++|+|
T Consensus         1 R~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l~~-~-~~-l~~L~~L~l~~N~i   77 (124)
T d1dcea3           1 RVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENVDG-V-AN-LPRLQELLLCNNRL   77 (124)
T ss_dssp             SEEECTTSCCSSCCCGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCCGG-G-TT-CSSCCEEECCSSCC
T ss_pred             CEEEcCCCCCCCCcccccCCCCCEEECCCCccCcchhhhhhhhcccccccccccccccCc-c-cc-ccccCeEECCCCcc
Confidence            357777777777765444789999999999999999889999999999999999999875 3 33 89999999999999


Q ss_pred             CCCch--hhhCCCCCcEEEccCCCCCCC---chhhhcCCCCCcEE
Q psy12423        228 TSLPS--LIRQIASLKYLFLQSNSINIL---PQLFLQNSSKLKVL  267 (567)
Q Consensus       228 ~~lp~--~~~~l~~L~~L~Ls~N~l~~l---~~~~l~~l~~L~~L  267 (567)
                      +.++.  .+..+++|++|++++|.++.+   +..+...+|+|+.|
T Consensus        78 ~~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          78 QQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            98774  578899999999999998754   45566678888876

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.7e-16  Score=162.33  Aligned_cols=283  Identities=16%  Similarity=0.128  Sum_probs=147.1

Q ss_pred             CcEEEccCCCCCc--CCccCCCCCCCCEEeCcCCCCCCCC-hhh---hccCcCchhhhhhccchhhccccccccCCc---
Q psy12423          1 LQEFRVDRNDLTE--FPGNQDSFPRLKFLSAAQNRISHLP-VFL---RHPMSPLNNVIEHGIAEEREEDFEQDEDGI---   71 (567)
Q Consensus         1 L~~L~Ls~n~l~~--lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~---~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l---   71 (567)
                      |++||+++|+|+.  +.+.+..+++|++|+|++|.|+... ..+   ....+.|+.+             +...+.+   
T Consensus         4 l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~L-------------dLs~N~i~~~   70 (460)
T d1z7xw1           4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAEL-------------NLRSNELGDV   70 (460)
T ss_dssp             EEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEE-------------ECTTCCCHHH
T ss_pred             CCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEE-------------ECcCCcCChH
Confidence            5789999999984  3444667788999999999887321 111   1233444433             1111111   


Q ss_pred             --ccccCCC-CCCCCccEEEecCCCCCCcc------ccCCCCCccEEEccCCCCCCCC----------------------
Q psy12423         72 --IVERREP-EVKGELTSVNLRSNQLKGTI------ILGNYGNLTTLDVSENSIESLD----------------------  120 (567)
Q Consensus        72 --~~~~~~~-~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~~----------------------  120 (567)
                        ......+ ....+|++|+|++|+++...      .+..+++|++|++++|.+....                      
T Consensus        71 ~~~~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~  150 (460)
T d1z7xw1          71 GVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEY  150 (460)
T ss_dssp             HHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             HHHHHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccc
Confidence              1111112 22347889999988887543      4667888999998888764310                      


Q ss_pred             --------------CcccccCcEEEcccCcccce---------e----------------------------cCCCCCcE
Q psy12423        121 --------------LGALNRLESIKCSRNQLKTL---------V----------------------------LNGSSLIS  149 (567)
Q Consensus       121 --------------~~~l~~L~~L~ls~n~l~~l---------~----------------------------~~~~~L~~  149 (567)
                                    +.....++.+.++.+.+...         .                            .....++.
T Consensus       151 ~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~  230 (460)
T d1z7xw1         151 CSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE  230 (460)
T ss_dssp             SCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCE
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccc
Confidence                          01123455555554432210         0                            01244555


Q ss_pred             EEcCCCccccccCC-------CCCCcccEEecccCCCCCc-----ccccCCCcCCcEEECcCCCCCCCC-----hhhhhc
Q psy12423        150 VIAGNNKLQSLIVS-------PRPARLQHLDISYNELESL-----PDWIDTCPELETIFASHNRITQLP-----SQFFCR  212 (567)
Q Consensus       150 L~l~~n~l~~~~~~-------~~~~~L~~L~Ls~n~l~~l-----p~~l~~l~~L~~L~Ls~N~l~~l~-----~~~~~~  212 (567)
                      +.+..|.+......       .....++.|++++|.+...     ..++...+.++.+++++|.++...     ..+...
T Consensus       231 l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~  310 (460)
T d1z7xw1         231 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEP  310 (460)
T ss_dssp             EECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTST
T ss_pred             cchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcccccc
Confidence            55555543221110       1134566777777666521     223444556666666666654211     111111


Q ss_pred             cCCCccEEECCCCCCCCC-----chhhhCCCCCcEEEccCCCCCC-----CchhhhcCCCCCcEEEccCCcCCC-----C
Q psy12423        213 ELGKLHTLQLSFNRLTSL-----PSLIRQIASLKYLFLQSNSINI-----LPQLFLQNSSKLKVLNISKNCLKM-----L  277 (567)
Q Consensus       213 ~l~~L~~L~Ls~N~l~~l-----p~~~~~l~~L~~L~Ls~N~l~~-----l~~~~l~~l~~L~~L~Ls~N~l~~-----i  277 (567)
                       ...|+.+++++|.++..     ...+...++|++|+|++|.|+.     +...+....+.|++|+|++|.|+.     |
T Consensus       311 -~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l  389 (460)
T d1z7xw1         311 -GCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSL  389 (460)
T ss_dssp             -TCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHH
T ss_pred             -ccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHH
Confidence             34566666666666531     2233455567777777776653     222222345567777777776652     2


Q ss_pred             CCCCcCCccceeecccCCcc
Q psy12423        278 PSLQKGFYLLNISQLRLPGF  297 (567)
Q Consensus       278 p~~~~~~~~L~~~~l~~~~~  297 (567)
                      +..+...+.|..+++..|.+
T Consensus       390 ~~~l~~~~~L~~L~Ls~N~i  409 (460)
T d1z7xw1         390 AATLLANHSLRELDLSNNCL  409 (460)
T ss_dssp             HHHHHHCCCCCEEECCSSSC
T ss_pred             HHHHhcCCCCCEEECCCCcC
Confidence            22222334455555555544

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=9.7e-15  Score=129.93  Aligned_cols=111  Identities=24%  Similarity=0.232  Sum_probs=98.1

Q ss_pred             CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchh-hhCCCCCcEEE
Q psy12423        166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSL-IRQIASLKYLF  244 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~-~~~l~~L~~L~  244 (567)
                      +..+++|+|++|+|+.++..+..+++|+.|+|++|.|+.++.  +.. +++|++|++++|+++.++.. +..+++|+.|+
T Consensus        17 ~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~--~~~-l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          17 AVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDG--FPL-LRRLKTLLVNNNRICRIGEGLDQALPDLTELI   93 (162)
T ss_dssp             TTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECC--CCC-CSSCCEEECCSSCCCEECSCHHHHCTTCCEEE
T ss_pred             cCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCccCC--ccc-CcchhhhhcccccccCCCccccccccccccce
Confidence            568999999999999998877889999999999999998854  333 89999999999999998764 57899999999


Q ss_pred             ccCCCCCCCch-hhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        245 LQSNSINILPQ-LFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       245 Ls~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      +++|+|+.++. ..+..+++|+.|++++|+++.+|.
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~  129 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKH  129 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTT
T ss_pred             eccccccccccccccccccccchhhcCCCccccccc
Confidence            99999998875 557889999999999999998884

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.48  E-value=2.7e-15  Score=150.76  Aligned_cols=231  Identities=20%  Similarity=0.188  Sum_probs=152.6

Q ss_pred             cCCccCCCCCCCCEEeCcCCCCCCCC-hhhhccCcCchhhhhhccchhhccccccccCCcccccCCCCCCCCccEEEecC
Q psy12423         13 EFPGNQDSFPRLKFLSAAQNRISHLP-VFLRHPMSPLNNVIEHGIAEEREEDFEQDEDGIIVERREPEVKGELTSVNLRS   91 (567)
Q Consensus        13 ~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~~L~~L~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~~L~Ls~   91 (567)
                      .+...+.....|+.|+|++|.|..-. ..+..                                 .+...++|+.|++++
T Consensus        22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~---------------------------------~l~~~~~L~~l~l~~   68 (344)
T d2ca6a1          22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSE---------------------------------NIASKKDLEIAEFSD   68 (344)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHH---------------------------------TTTTCTTCCEEECCS
T ss_pred             HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHH---------------------------------HHHhCCCCCEEECCC
Confidence            34455667788889999888876321 12211                                 112345777777777


Q ss_pred             CCCCCcc------------ccCCCCCccEEEccCCCCCCCC-------CcccccCcEEEcccCcccce------------
Q psy12423         92 NQLKGTI------------ILGNYGNLTTLDVSENSIESLD-------LGALNRLESIKCSRNQLKTL------------  140 (567)
Q Consensus        92 n~l~~~~------------~l~~l~~L~~L~L~~n~l~~~~-------~~~l~~L~~L~ls~n~l~~l------------  140 (567)
                      +......            .+...++|+.|++++|.+....       +...++|++|++++|.+...            
T Consensus        69 ~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~  148 (344)
T d2ca6a1          69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQEL  148 (344)
T ss_dssp             CCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHH
T ss_pred             CcccccccccchHHHHHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccccccccccccc
Confidence            6544221            2456677888888888776642       33456788888888776421            


Q ss_pred             -----ecCCCCCcEEEcCCCccccccCCCC------CCcccEEecccCCCCC------cccccCCCcCCcEEECcCCCCC
Q psy12423        141 -----VLNGSSLISVIAGNNKLQSLIVSPR------PARLQHLDISYNELES------LPDWIDTCPELETIFASHNRIT  203 (567)
Q Consensus       141 -----~~~~~~L~~L~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~~------lp~~l~~l~~L~~L~Ls~N~l~  203 (567)
                           ....+.|+.+.++.|.++......+      ...|+.|+|++|.++.      +...+..+++|+.|+|++|.++
T Consensus       149 ~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~  228 (344)
T d2ca6a1         149 AVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFT  228 (344)
T ss_dssp             HHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCH
T ss_pred             ccccccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccc
Confidence                 1235678888888887765433322      5789999999998873      2334667888999999999886


Q ss_pred             C-----CChhhhhccCCCccEEECCCCCCCC-----CchhhhC--CCCCcEEEccCCCCCC-----CchhhhcCCCCCcE
Q psy12423        204 Q-----LPSQFFCRELGKLHTLQLSFNRLTS-----LPSLIRQ--IASLKYLFLQSNSINI-----LPQLFLQNSSKLKV  266 (567)
Q Consensus       204 ~-----l~~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~--l~~L~~L~Ls~N~l~~-----l~~~~l~~l~~L~~  266 (567)
                      .     +...+ .. .++|++|+|++|.|+.     +-..+..  .+.|++|++++|.|+.     +...+..+++.|+.
T Consensus       229 ~~g~~~L~~~l-~~-~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~  306 (344)
T d2ca6a1         229 HLGSSALAIAL-KS-WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  306 (344)
T ss_dssp             HHHHHHHHHHG-GG-CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             ccccccccccc-cc-cccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCE
Confidence            3     22222 22 7889999999998875     2223332  4679999999999874     33333346788999


Q ss_pred             EEccCCcCCCCC
Q psy12423        267 LNISKNCLKMLP  278 (567)
Q Consensus       267 L~Ls~N~l~~ip  278 (567)
                      |+|++|++..-.
T Consensus       307 L~l~~N~~~~~~  318 (344)
T d2ca6a1         307 LELNGNRFSEED  318 (344)
T ss_dssp             EECTTSBSCTTS
T ss_pred             EECCCCcCCCcc
Confidence            999999887443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=8.8e-14  Score=144.02  Aligned_cols=264  Identities=20%  Similarity=0.199  Sum_probs=171.2

Q ss_pred             CcEEEccCCCCC-----cCCccCCCCCCCCEEeCcCCCCCCCC-hhhhccC----cCchhhhhhccchhhcccccccc--
Q psy12423          1 LQEFRVDRNDLT-----EFPGNQDSFPRLKFLSAAQNRISHLP-VFLRHPM----SPLNNVIEHGIAEEREEDFEQDE--   68 (567)
Q Consensus         1 L~~L~Ls~n~l~-----~lp~~~~~l~~L~~L~Ls~n~i~~lp-~~~~~~L----~~L~~l~~~~~~~~~~~~~~~~~--   68 (567)
                      |+.|+|++|.|+     .|+..+..+++|++|||++|.|+... ..+...+    ..|+.+          ++..+..  
T Consensus        29 l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L----------~L~~n~it~   98 (460)
T d1z7xw1          29 CQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKL----------SLQNCCLTG   98 (460)
T ss_dssp             CSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEE----------ECTTSCCBG
T ss_pred             CCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEE----------ECCCCCccc
Confidence            688999999988     34566788999999999999986321 1122111    123322          1111111  


Q ss_pred             CCcccccCCCCCCCCccEEEecCCCCCCcc-----------------------------------ccCCCCCccEEEccC
Q psy12423         69 DGIIVERREPEVKGELTSVNLRSNQLKGTI-----------------------------------ILGNYGNLTTLDVSE  113 (567)
Q Consensus        69 ~~l~~~~~~~~~l~~L~~L~Ls~n~l~~~~-----------------------------------~l~~l~~L~~L~L~~  113 (567)
                      .++......+..+++|++|+|++|.+....                                   .+.....++.++++.
T Consensus        99 ~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~  178 (460)
T d1z7xw1          99 AGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN  178 (460)
T ss_dssp             GGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCS
T ss_pred             cccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccc
Confidence            112223344567889999999999764210                                   011234566666665


Q ss_pred             CCCCC-----------------------------C-------CCcccccCcEEEcccCcccce---------ecCCCCCc
Q psy12423        114 NSIES-----------------------------L-------DLGALNRLESIKCSRNQLKTL---------VLNGSSLI  148 (567)
Q Consensus       114 n~l~~-----------------------------~-------~~~~l~~L~~L~ls~n~l~~l---------~~~~~~L~  148 (567)
                      +.+..                             .       .+.....++.++++.|.+...         ......++
T Consensus       179 ~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~  258 (460)
T d1z7xw1         179 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLR  258 (460)
T ss_dssp             SBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred             cccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccc
Confidence            53321                             0       012345678888888876432         13457899


Q ss_pred             EEEcCCCccccccCCCC------CCcccEEecccCCCCC-----ccccc-CCCcCCcEEECcCCCCCCCChhh----hhc
Q psy12423        149 SVIAGNNKLQSLIVSPR------PARLQHLDISYNELES-----LPDWI-DTCPELETIFASHNRITQLPSQF----FCR  212 (567)
Q Consensus       149 ~L~l~~n~l~~~~~~~~------~~~L~~L~Ls~n~l~~-----lp~~l-~~l~~L~~L~Ls~N~l~~l~~~~----~~~  212 (567)
                      .+++++|.+........      .+.++.+++++|.++.     +...+ .....|+.+++++|.++......    ...
T Consensus       259 ~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~  338 (460)
T d1z7xw1         259 TLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQ  338 (460)
T ss_dssp             EEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccchhhhhhhhccccccc
Confidence            99999998865543222      6789999999998862     22222 34568999999999988543222    222


Q ss_pred             cCCCccEEECCCCCCCC-----Cchhhh-CCCCCcEEEccCCCCCCCc----hhhhcCCCCCcEEEccCCcCC
Q psy12423        213 ELGKLHTLQLSFNRLTS-----LPSLIR-QIASLKYLFLQSNSINILP----QLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       213 ~l~~L~~L~Ls~N~l~~-----lp~~~~-~l~~L~~L~Ls~N~l~~l~----~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                       .++|++|+|++|+|+.     ++..+. ..+.|++|+|++|.|+...    ...+..+++|++|+|++|+|+
T Consensus       339 -~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         339 -NRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             -CSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             -ccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence             6789999999999874     334443 4678999999999998532    123467899999999999987

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.7e-12  Score=110.91  Aligned_cols=106  Identities=18%  Similarity=0.173  Sum_probs=72.9

Q ss_pred             cccEEecccCCCCCcccccCCCcCCcEEECcCC-CCCCCChhhhhccCCCccEEECCCCCCCCCc-hhhhCCCCCcEEEc
Q psy12423        168 RLQHLDISYNELESLPDWIDTCPELETIFASHN-RITQLPSQFFCRELGKLHTLQLSFNRLTSLP-SLIRQIASLKYLFL  245 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp-~~~~~l~~L~~L~L  245 (567)
                      ..+.++++++.+.++|..+..+++|++|++++| .|+.++...|.+ +++|+.|+|++|+|+.++ ..|..+++|++|+|
T Consensus         9 ~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~-l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L   87 (156)
T d2ifga3           9 GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRG-LGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (156)
T ss_dssp             SSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCS-CCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CCCeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhcc-ccccCcceeeccccCCcccccccccccccceec
Confidence            345567777777777776777777777777655 477777766665 777777777777777764 35667777777777


Q ss_pred             cCCCCCCCchhhhcCCCCCcEEEccCCcCC
Q psy12423        246 QSNSINILPQLFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       246 s~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      ++|+|+.+|..+|..+ +|+.|+|++|++.
T Consensus        88 s~N~l~~l~~~~~~~~-~l~~L~L~~Np~~  116 (156)
T d2ifga3          88 SFNALESLSWKTVQGL-SLQELVLSGNPLH  116 (156)
T ss_dssp             CSSCCSCCCSTTTCSC-CCCEEECCSSCCC
T ss_pred             cCCCCcccChhhhccc-cccccccCCCccc
Confidence            7777777777666443 5777777777664

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=2.1e-12  Score=125.68  Aligned_cols=192  Identities=18%  Similarity=0.172  Sum_probs=111.2

Q ss_pred             CCCccEEEecCCCCCCcc---ccCCCCCccEEEccCCCCCCC---CCcccccCcEEEcccC-cccce-----ecCCCCCc
Q psy12423         81 KGELTSVNLRSNQLKGTI---ILGNYGNLTTLDVSENSIESL---DLGALNRLESIKCSRN-QLKTL-----VLNGSSLI  148 (567)
Q Consensus        81 l~~L~~L~Ls~n~l~~~~---~l~~l~~L~~L~L~~n~l~~~---~~~~l~~L~~L~ls~n-~l~~l-----~~~~~~L~  148 (567)
                      ..+|++|+++++.+....   .+..+++|++|++++|.+...   .+..+++|++|+++++ .++..     ...+++|+
T Consensus        45 ~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          45 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            347888888888776432   467788888888888887653   2556778888888874 45432     13456777


Q ss_pred             EEEcCCC-ccccccCCC----CCCcccEEecccC--CCC--CcccccCCCcCCcEEECcCC-CCCCCChhhhhccCCCcc
Q psy12423        149 SVIAGNN-KLQSLIVSP----RPARLQHLDISYN--ELE--SLPDWIDTCPELETIFASHN-RITQLPSQFFCRELGKLH  218 (567)
Q Consensus       149 ~L~l~~n-~l~~~~~~~----~~~~L~~L~Ls~n--~l~--~lp~~l~~l~~L~~L~Ls~N-~l~~l~~~~~~~~l~~L~  218 (567)
                      +|+++++ .+++.....    .+++|+.|+++++  .++  .+...+..+++|++|++++| .++.-....+.. +++|+
T Consensus       125 ~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~-~~~L~  203 (284)
T d2astb2         125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQ  203 (284)
T ss_dssp             EEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-CTTCC
T ss_pred             ccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc-cCcCC
Confidence            7777764 333221111    1456777777764  233  23333455677777777765 355222222222 67777


Q ss_pred             EEECCCC-CCCC-CchhhhCCCCCcEEEccCCCCCCC-chhhhcCCCCCcEEEccCCcCCCC
Q psy12423        219 TLQLSFN-RLTS-LPSLIRQIASLKYLFLQSNSINIL-PQLFLQNSSKLKVLNISKNCLKML  277 (567)
Q Consensus       219 ~L~Ls~N-~l~~-lp~~~~~l~~L~~L~Ls~N~l~~l-~~~~l~~l~~L~~L~Ls~N~l~~i  277 (567)
                      +|+|++| .++. -...+..+++|+.|+++++ ++.- -..+...+|+|+   +..++++.+
T Consensus       204 ~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~  261 (284)
T d2astb2         204 HLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTI  261 (284)
T ss_dssp             EEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCT
T ss_pred             EEECCCCCCCChHHHHHHhcCCCCCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCC
Confidence            7777774 4543 2234566677777777776 3321 112223455544   455666644

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.26  E-value=7.5e-13  Score=132.58  Aligned_cols=219  Identities=16%  Similarity=0.138  Sum_probs=156.5

Q ss_pred             CCCCCccEEEecCCCCCCcc------ccCCCCCccEEEccCCCCCCCC-------------CcccccCcEEEcccCcccc
Q psy12423         79 EVKGELTSVNLRSNQLKGTI------ILGNYGNLTTLDVSENSIESLD-------------LGALNRLESIKCSRNQLKT  139 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~------~l~~l~~L~~L~L~~n~l~~~~-------------~~~l~~L~~L~ls~n~l~~  139 (567)
                      .....|+.|+|++|.+....      .+...++|+.|+++++.+....             +..+++|+.|++++|.+..
T Consensus        28 ~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~  107 (344)
T d2ca6a1          28 LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGP  107 (344)
T ss_dssp             HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCT
T ss_pred             hhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccccc
Confidence            34568999999999886532      5778899999999988655321             3456889999999998875


Q ss_pred             ee--------cCCCCCcEEEcCCCccccccCCC---------------CCCcccEEecccCCCC-----CcccccCCCcC
Q psy12423        140 LV--------LNGSSLISVIAGNNKLQSLIVSP---------------RPARLQHLDISYNELE-----SLPDWIDTCPE  191 (567)
Q Consensus       140 l~--------~~~~~L~~L~l~~n~l~~~~~~~---------------~~~~L~~L~Ls~n~l~-----~lp~~l~~l~~  191 (567)
                      ..        ...++|+.|++++|.++......               ..+.|+.|++++|.++     .+...+..++.
T Consensus       108 ~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~  187 (344)
T d2ca6a1         108 TAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL  187 (344)
T ss_dssp             TTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTT
T ss_pred             ccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhhhhhh
Confidence            31        34689999999999875422111               1467999999999887     23445667889


Q ss_pred             CcEEECcCCCCCCCC-----hhhhhccCCCccEEECCCCCCCC-----CchhhhCCCCCcEEEccCCCCCCCchhh----
Q psy12423        192 LETIFASHNRITQLP-----SQFFCRELGKLHTLQLSFNRLTS-----LPSLIRQIASLKYLFLQSNSINILPQLF----  257 (567)
Q Consensus       192 L~~L~Ls~N~l~~l~-----~~~~~~~l~~L~~L~Ls~N~l~~-----lp~~~~~l~~L~~L~Ls~N~l~~l~~~~----  257 (567)
                      |+.|+|++|.|+.-.     ...+.. .++|+.|+|++|.++.     +...+..+++|++|+|++|.|+......    
T Consensus       188 L~~L~L~~n~i~~~g~~~~l~~~l~~-~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~  266 (344)
T d2ca6a1         188 LHTVKMVQNGIRPEGIEHLLLEGLAY-CQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDA  266 (344)
T ss_dssp             CCEEECCSSCCCHHHHHHHHHTTGGG-CTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHH
T ss_pred             hcccccccccccccccccchhhhhcc-hhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHHHHH
Confidence            999999999987321     112222 7899999999999864     4456788999999999999998543322    


Q ss_pred             hc--CCCCCcEEEccCCcCCC-----CCCCCc-CCccceeecccCCccc
Q psy12423        258 LQ--NSSKLKVLNISKNCLKM-----LPSLQK-GFYLLNISQLRLPGFC  298 (567)
Q Consensus       258 l~--~l~~L~~L~Ls~N~l~~-----ip~~~~-~~~~L~~~~l~~~~~~  298 (567)
                      +.  ..+.|++|++++|+|+.     +...+. +.+.|..+++..|.|.
T Consensus       267 l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         267 FSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             HHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             hhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            22  34689999999999862     222221 2345666666666554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=5.3e-12  Score=122.74  Aligned_cols=171  Identities=19%  Similarity=0.184  Sum_probs=120.1

Q ss_pred             CCCCCccEEEecCCCCCCcc--ccCCCCCccEEEccCC-CCCCCC----CcccccCcEEEcccC-cccce-----e-cCC
Q psy12423         79 EVKGELTSVNLRSNQLKGTI--ILGNYGNLTTLDVSEN-SIESLD----LGALNRLESIKCSRN-QLKTL-----V-LNG  144 (567)
Q Consensus        79 ~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~L~~n-~l~~~~----~~~l~~L~~L~ls~n-~l~~l-----~-~~~  144 (567)
                      ..+++|++|+|++|.+....  .+..+++|++|++++| .++...    ...+++|++|+++++ .++..     . ...
T Consensus        68 ~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~  147 (284)
T d2astb2          68 SQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVS  147 (284)
T ss_dssp             TTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSC
T ss_pred             HhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccc
Confidence            45678999999999887543  6778899999999996 566432    356889999999986 44421     1 235


Q ss_pred             CCCcEEEcCCC--ccccccCCCC---CCcccEEecccCC-CC-CcccccCCCcCCcEEECcCC-CCCCCChhhhhccCCC
Q psy12423        145 SSLISVIAGNN--KLQSLIVSPR---PARLQHLDISYNE-LE-SLPDWIDTCPELETIFASHN-RITQLPSQFFCRELGK  216 (567)
Q Consensus       145 ~~L~~L~l~~n--~l~~~~~~~~---~~~L~~L~Ls~n~-l~-~lp~~l~~l~~L~~L~Ls~N-~l~~l~~~~~~~~l~~  216 (567)
                      +.|+.|+++++  .++......+   +++|++|++++|. ++ .....+..+++|++|+|++| .++.-....+.. +++
T Consensus       148 ~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~-~~~  226 (284)
T d2astb2         148 ETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE-IPT  226 (284)
T ss_dssp             TTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGG-CTT
T ss_pred             cccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhc-CCC
Confidence            78999999875  3443322222   7899999999874 66 34566788999999999996 576433223333 899


Q ss_pred             ccEEECCCCCCCC--CchhhhCCCCCcEEEccCCCCCCCc
Q psy12423        217 LHTLQLSFNRLTS--LPSLIRQIASLKYLFLQSNSINILP  254 (567)
Q Consensus       217 L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~l~  254 (567)
                      |+.|+++++ ++.  ++.....+++|+   +..+.++.+.
T Consensus       227 L~~L~l~~~-~~d~~l~~l~~~lp~L~---i~~~~ls~~~  262 (284)
T d2astb2         227 LKTLQVFGI-VPDGTLQLLKEALPHLQ---INCSHFTTIA  262 (284)
T ss_dssp             CCEEECTTS-SCTTCHHHHHHHSTTSE---ESCCCSCCTT
T ss_pred             CCEEeeeCC-CCHHHHHHHHHhCcccc---ccCccCCCCC
Confidence            999999988 443  444445677765   4666777553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.24  E-value=8.5e-14  Score=128.05  Aligned_cols=106  Identities=24%  Similarity=0.310  Sum_probs=55.2

Q ss_pred             CCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCchhhhCCCCCcEEEc
Q psy12423        166 PARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLPSLIRQIASLKYLFL  245 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L  245 (567)
                      +++|++|+|++|.|+.++ .+..+++|+.|+|++|.|+.++.....  +++|+.|++++|+|+.++. +..+++|+.|++
T Consensus        47 L~~L~~L~Ls~n~I~~i~-~l~~l~~L~~L~Ls~N~i~~i~~~~~~--~~~L~~L~l~~N~i~~l~~-~~~l~~L~~L~L  122 (198)
T d1m9la_          47 LKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAV--ADTLEELWISYNQIASLSG-IEKLVNLRVLYM  122 (198)
T ss_dssp             TTTCCEEECSEEEESCCC-CHHHHTTCCEEECCEEEECSCSSHHHH--HHHCCEEECSEEECCCHHH-HHHHHHSSEEEE
T ss_pred             ccccceeECcccCCCCcc-cccCCccccChhhcccccccccccccc--ccccccccccccccccccc-cccccccccccc
Confidence            344555555555555553 244555555555555555555432221  3455555555555555432 444555555555


Q ss_pred             cCCCCCCCch-hhhcCCCCCcEEEccCCcCC
Q psy12423        246 QSNSINILPQ-LFLQNSSKLKVLNISKNCLK  275 (567)
Q Consensus       246 s~N~l~~l~~-~~l~~l~~L~~L~Ls~N~l~  275 (567)
                      ++|+|+.++. ..+..+++|+.|+|++|++.
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             ccchhccccccccccCCCccceeecCCCccc
Confidence            5555555543 33455555555555555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.8e-11  Score=106.36  Aligned_cols=114  Identities=17%  Similarity=0.079  Sum_probs=97.2

Q ss_pred             CCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCC-CCCCCch-hhhCCCCCcEEEccCCCCCCCchhhhcCCCCCc
Q psy12423        188 TCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFN-RLTSLPS-LIRQIASLKYLFLQSNSINILPQLFLQNSSKLK  265 (567)
Q Consensus       188 ~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~~~l~~l~~L~  265 (567)
                      .+...+.++.+++.+..+|..+..  +++|++|++++| .|+.++. .|.++++|+.|+|++|+|+.+++..|..+++|+
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~--l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPG--AENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCS--CSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCccCcccccC--ccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccc
Confidence            344567899999999988887654  889999999876 5998875 689999999999999999999999999999999


Q ss_pred             EEEccCCcCCCCCCCCcCCccceeecccCCccccCCcc
Q psy12423        266 VLNISKNCLKMLPSLQKGFYLLNISQLRLPGFCNSDAL  303 (567)
Q Consensus       266 ~L~Ls~N~l~~ip~~~~~~~~L~~~~l~~~~~~~~~~~  303 (567)
                      .|+|++|+|+.+|...+....|..+++..|.|.+.+.+
T Consensus        84 ~L~Ls~N~l~~l~~~~~~~~~l~~L~L~~Np~~C~C~~  121 (156)
T d2ifga3          84 RLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCAL  121 (156)
T ss_dssp             EEECCSSCCSCCCSTTTCSCCCCEEECCSSCCCCCGGG
T ss_pred             ceeccCCCCcccChhhhccccccccccCCCcccCCchH
Confidence            99999999999999888666777778888887655443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.16  E-value=7.4e-13  Score=121.65  Aligned_cols=123  Identities=19%  Similarity=0.232  Sum_probs=94.5

Q ss_pred             CCCCCcEEEcCCCccccccCCCCCCcccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEEC
Q psy12423        143 NGSSLISVIAGNNKLQSLIVSPRPARLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQL  222 (567)
Q Consensus       143 ~~~~L~~L~l~~n~l~~~~~~~~~~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L  222 (567)
                      .+++|+.|++++|.++.+.....+++|++|+|++|.|+.+|..+..+++|++|++++|.|+.++. +. . +++|+.|+|
T Consensus        46 ~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~i~~~~~~~~~L~~L~l~~N~i~~l~~-~~-~-l~~L~~L~L  122 (198)
T d1m9la_          46 TLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSG-IE-K-LVNLRVLYM  122 (198)
T ss_dssp             HTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECSCSSHHHHHHHCCEEECSEEECCCHHH-HH-H-HHHSSEEEE
T ss_pred             cccccceeECcccCCCCcccccCCccccChhhccccccccccccccccccccccccccccccccc-cc-c-ccccccccc
Confidence            45788899999998888754333788999999999888887766666789999999998887753 22 2 778999999


Q ss_pred             CCCCCCCCch--hhhCCCCCcEEEccCCCCCCCchh----------hhcCCCCCcEEE
Q psy12423        223 SFNRLTSLPS--LIRQIASLKYLFLQSNSINILPQL----------FLQNSSKLKVLN  268 (567)
Q Consensus       223 s~N~l~~lp~--~~~~l~~L~~L~Ls~N~l~~l~~~----------~l~~l~~L~~L~  268 (567)
                      ++|+|+.++.  .+..+++|+.|+|++|.+...+..          ++..+|+|+.||
T Consensus       123 ~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         123 SNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             SEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            9999888764  578888999999999987643332          245678888875

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=3.7e-08  Score=86.41  Aligned_cols=87  Identities=26%  Similarity=0.219  Sum_probs=55.5

Q ss_pred             CcccccCCCcCCcEEECcCCCCCCCCh--hhhhccCCCccEEECCCCCCCCCch-hhhCCCCCcEEEccCCCCCCCch--
Q psy12423        181 SLPDWIDTCPELETIFASHNRITQLPS--QFFCRELGKLHTLQLSFNRLTSLPS-LIRQIASLKYLFLQSNSINILPQ--  255 (567)
Q Consensus       181 ~lp~~l~~l~~L~~L~Ls~N~l~~l~~--~~~~~~l~~L~~L~Ls~N~l~~lp~-~~~~l~~L~~L~Ls~N~l~~l~~--  255 (567)
                      .++..+..+++|++|+|++|+|+.++.  ..+.. +++|+.|+|++|.|+.++. .......|+.|++++|.+.....  
T Consensus        56 ~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~-l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~  134 (162)
T d1koha1          56 TLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQK-APNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQ  134 (162)
T ss_dssp             HHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHH-STTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSH
T ss_pred             hhHHHHHhCCCCCEeeCCCccccCCchhHHHHhh-CCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccc
Confidence            333344566778888888888776653  22333 7778888888888777665 22334467777888887764432  


Q ss_pred             -----hhhcCCCCCcEEE
Q psy12423        256 -----LFLQNSSKLKVLN  268 (567)
Q Consensus       256 -----~~l~~l~~L~~L~  268 (567)
                           .++..+|+|+.||
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence                 2355677777764

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=1.4e-07  Score=82.61  Aligned_cols=107  Identities=23%  Similarity=0.134  Sum_probs=73.0

Q ss_pred             cccEEecccCCCCCcccccCCCcCCcEEECcCCCCCCCChhhhhccCCCccEEECCCCCCCCCc---hhhhCCCCCcEEE
Q psy12423        168 RLQHLDISYNELESLPDWIDTCPELETIFASHNRITQLPSQFFCRELGKLHTLQLSFNRLTSLP---SLIRQIASLKYLF  244 (567)
Q Consensus       168 ~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~lp---~~~~~l~~L~~L~  244 (567)
                      ..+.|+++++..  .+ .+..+..+..++...+.+..+ ..++.. +++|++|+|++|+|+.++   ..+..+++|+.|+
T Consensus        23 ~~~~Ldls~l~~--~~-~l~~~~~~~~l~~~~~~~~~l-~~~~~~-~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~   97 (162)
T d1koha1          23 SQQALDLKGLRS--DP-DLVAQNIDVVLNRRSSMAATL-RIIEEN-IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILN   97 (162)
T ss_dssp             SSCCBCCCCCSS--CT-TTTTTTCCCCTTSHHHHHHHH-HHHHHH-CTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCC
T ss_pred             hhCeeecccCCC--Cc-hhhhccchhhcchhhhHhhhh-HHHHHh-CCCCCEeeCCCccccCCchhHHHHhhCCcccccc
Confidence            345556654432  22 133333444444444433333 233333 899999999999999875   3467899999999


Q ss_pred             ccCCCCCCCchhhhcCCCCCcEEEccCCcCCCCCC
Q psy12423        245 LQSNSINILPQLFLQNSSKLKVLNISKNCLKMLPS  279 (567)
Q Consensus       245 Ls~N~l~~l~~~~l~~l~~L~~L~Ls~N~l~~ip~  279 (567)
                      |++|.|+.++...+.....|+.|++++|++.....
T Consensus        98 Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~  132 (162)
T d1koha1          98 LSGNELKSERELDKIKGLKLEELWLDGNSLSDTFR  132 (162)
T ss_dssp             CTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSS
T ss_pred             cccCccccchhhhhhhccccceeecCCCCcCcCcc
Confidence            99999999988555566789999999999986543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.94  E-value=5.2e-06  Score=72.64  Aligned_cols=105  Identities=16%  Similarity=0.149  Sum_probs=62.3

Q ss_pred             CcccEEecccC-CCC-----CcccccCCCcCCcEEECcCCCCCCCC----hhhhhccCCCccEEECCCCCCCC-----Cc
Q psy12423        167 ARLQHLDISYN-ELE-----SLPDWIDTCPELETIFASHNRITQLP----SQFFCRELGKLHTLQLSFNRLTS-----LP  231 (567)
Q Consensus       167 ~~L~~L~Ls~n-~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~l~----~~~~~~~l~~L~~L~Ls~N~l~~-----lp  231 (567)
                      ++|++|+|+++ .++     .+...+...+.|++|+|++|.+..-.    ...+.. .+.|++|+|++|.|+.     +-
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~-n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIET-SPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHH-CSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhh-cccccceeeehhhcchHHHHHHH
Confidence            46777777653 354     12334566677888888877776211    111222 5677777777777764     22


Q ss_pred             hhhhCCCCCcEEEccCCCCCCCch-------hhhcCCCCCcEEEccCC
Q psy12423        232 SLIRQIASLKYLFLQSNSINILPQ-------LFLQNSSKLKVLNISKN  272 (567)
Q Consensus       232 ~~~~~l~~L~~L~Ls~N~l~~l~~-------~~l~~l~~L~~L~Ls~N  272 (567)
                      ..+...++|++|+|++|.+..+..       .++...++|+.|+++.+
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            345566777777777776665432       22345667777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.49  E-value=1.7e-05  Score=69.25  Aligned_cols=82  Identities=16%  Similarity=0.141  Sum_probs=47.8

Q ss_pred             CcccEEecccCCCC-----CcccccCCCcCCcEEECcCCCCCCCChhh----hhccCCCccEEECCCCCCCCC-------
Q psy12423        167 ARLQHLDISYNELE-----SLPDWIDTCPELETIFASHNRITQLPSQF----FCRELGKLHTLQLSFNRLTSL-------  230 (567)
Q Consensus       167 ~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~l~~~~----~~~~l~~L~~L~Ls~N~l~~l-------  230 (567)
                      ++|++|+|++|.++     .+...+...+.|++|+|++|.|+.-....    ... .++|++|+|++|.+..+       
T Consensus        44 ~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~aL~~-n~sL~~L~l~~n~~~~~g~~~~~~  122 (167)
T d1pgva_          44 KHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLV-TQSIVEFKADNQRQSVLGNQVEMD  122 (167)
T ss_dssp             SCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTT-TCCCSEEECCCCSSCCCCHHHHHH
T ss_pred             CccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHHHHHh-CCcCCEEECCCCcCCCccHHHHHH
Confidence            45666777776665     22334555567777777777766321111    111 45677777777765543       


Q ss_pred             -chhhhCCCCCcEEEccCCC
Q psy12423        231 -PSLIRQIASLKYLFLQSNS  249 (567)
Q Consensus       231 -p~~~~~l~~L~~L~Ls~N~  249 (567)
                       ...+...++|+.|+++.+.
T Consensus       123 l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_         123 MMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHHHhCCCccEeeCcCCC
Confidence             2334556778888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.32  E-value=5.5e-05  Score=65.66  Aligned_cols=106  Identities=12%  Similarity=0.124  Sum_probs=67.7

Q ss_pred             CcccEEeccc-CCCC-----CcccccCCCcCCcEEECcCCCCCCCCh----hhhhccCCCccEEECCCCCCCC-----Cc
Q psy12423        167 ARLQHLDISY-NELE-----SLPDWIDTCPELETIFASHNRITQLPS----QFFCRELGKLHTLQLSFNRLTS-----LP  231 (567)
Q Consensus       167 ~~L~~L~Ls~-n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~l~~----~~~~~~l~~L~~L~Ls~N~l~~-----lp  231 (567)
                      ++|++|+|++ +.++     .+...+...+.|++|+|++|.++.-..    ..+.. .+.++.+++++|.+..     +.
T Consensus        17 ~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~-~~~l~~l~l~~~~~~~~g~~~l~   95 (166)
T d1io0a_          17 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKV-NNTLKSLNVESNFISGSGILALV   95 (166)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHH-CSSCCEEECCSSCCCHHHHHHHH
T ss_pred             CCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhh-cccchhhhhccccccchhHHHHH
Confidence            5677777776 4465     233456677888888888888773111    11222 6788888888888764     33


Q ss_pred             hhhhCCCCCcEEEcc--CCCCCC----CchhhhcCCCCCcEEEccCCc
Q psy12423        232 SLIRQIASLKYLFLQ--SNSINI----LPQLFLQNSSKLKVLNISKNC  273 (567)
Q Consensus       232 ~~~~~l~~L~~L~Ls--~N~l~~----l~~~~l~~l~~L~~L~Ls~N~  273 (567)
                      ..+...++|+.++|.  +|.+..    .-...+...+.|+.|+++.+.
T Consensus        96 ~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          96 EALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             HGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCC
Confidence            455677788876554  556653    112334577888888887654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.81  E-value=0.00011  Score=63.68  Aligned_cols=83  Identities=11%  Similarity=0.120  Sum_probs=53.8

Q ss_pred             CCcccEEecccCCCC-----CcccccCCCcCCcEEECcCCCCCCC-----ChhhhhccCCCccEEECC--CCCCCC----
Q psy12423        166 PARLQHLDISYNELE-----SLPDWIDTCPELETIFASHNRITQL-----PSQFFCRELGKLHTLQLS--FNRLTS----  229 (567)
Q Consensus       166 ~~~L~~L~Ls~n~l~-----~lp~~l~~l~~L~~L~Ls~N~l~~l-----~~~~~~~~l~~L~~L~Ls--~N~l~~----  229 (567)
                      .++|++|++++|.++     .+...+...+.++.+++++|.++.-     ...+. . .++|+.++|+  +|.+..    
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~-~-~~~L~~l~L~l~~n~i~~~~~~  122 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQ-S-NTSLIELRIDNQSQPLGNNVEM  122 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGG-G-CSSCCEEECCCCSSCCCHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHH-h-CccccEEeeccCCCcCcHHHHH
Confidence            456778888888776     2334456667888888888887622     12222 2 5677775554  556653    


Q ss_pred             -CchhhhCCCCCcEEEccCCCC
Q psy12423        230 -LPSLIRQIASLKYLFLQSNSI  250 (567)
Q Consensus       230 -lp~~~~~l~~L~~L~Ls~N~l  250 (567)
                       +...+...+.|+.|+++.+..
T Consensus       123 ~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_         123 EIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHhCCCcCEEeCcCCCC
Confidence             444566788899998877653