Psyllid ID: psy12448

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGHNVKRARGVCMSK
Secondary Structure (PSIPRED)
cccccHHHHHHccccccHHHHHHHccccHHHHHHccccccHHHHHHHHcccccccEEcccccccHHHHHHHcccccccccccccccccccccHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEEEccccccHHHHHHHHHHcHHHHHHHHHccccHHHHHccccccEEEEEEcccccHHHHHHHHHHHHcccccccccccccccccHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHcHHHEcccccccHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mkaedpiyvlennvpidsnyylenqlskplirifspilgdkaesillrgdhtrtkivsTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTqcqtcqgslheqvictsrdcpifyMRKKVqscghnvkrargvcmsk
Flexible Loop (DISEMBL)
MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAEsillrgdhtrtkIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRkkvqscghnvkrargvcmsk
Low Complexity Region (SEG)
MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGHNVKRARGVCMSK
Disordered region (IsUnstruct)
******IYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGHNVKR********
Disordered Region (DISOPRED)
**AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESIL**********************VQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGHNVKRARGVCMS*
Disordered Region (DISEMBL)
MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGHNVKRARGVCMSK
Disordered Region (DISPRO)
***EDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGHNVKRAR******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCxxxxxxxxxxxxxxxxxxxxxFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGHNVKRARGVCMSK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
O54747	1103	DNA polymerase delta cata	yes	N/A	0.886	0.135	0.594	5e-53
P28339	1106	DNA polymerase delta cata	yes	N/A	0.886	0.134	0.594	7e-53
P28340	1107	DNA polymerase delta cata	yes	N/A	0.886	0.134	0.594	9e-53
P52431	1105	DNA polymerase delta cata	yes	N/A	0.886	0.134	0.594	1e-52
P97283	1103	DNA polymerase delta cata	N/A	N/A	0.886	0.135	0.588	6e-52
P54358	1092	DNA polymerase delta cata	yes	N/A	0.898	0.138	0.589	7e-50
P30316	1086	DNA polymerase delta cata	yes	N/A	0.934	0.144	0.554	1e-46
P90829	1081	DNA polymerase delta cata	yes	N/A	0.904	0.140	0.486	5e-43
Q9LRE6	1105	DNA polymerase delta cata	yes	N/A	0.880	0.133	0.516	2e-40
Q9LVN7	1095	DNA polymerase delta cata	yes	N/A	0.869	0.133	0.503	3e-40

>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1 PE=2 SV=1

 Score =  206 bits (524), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 91/153 (59%), Positives = 118/153 (77%), Gaps = 4/153 (2%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
            MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AES+LLRGDHTR K V T
Sbjct: 933  MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLT 992

Query: 60   SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
            S+VG L  F +++ +CIGC+ V+       A+C FC  +E + Y+ E      LE++F +
Sbjct: 993  SKVGGLLAFTKRRNSCIGCRSVIDH---QGAVCKFCQPRESELYQKEVSHLNALEERFSR 1049

Query: 120  LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1050 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1082

Possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Required with its accessory proteins (proliferating cell nuclear antigen (PCNA) and replication factor C (RFC) or activator 1) for leading strand synthesis. Also involved in completing Okazaki fragments initiated by the DNA polymerase alpha/primase complex.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7

>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1 SV=1

 Score =  206 bits (523), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 91/153 (59%), Positives = 117/153 (76%), Gaps = 4/153 (2%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
            MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AE++LLRGDHTR K V T
Sbjct: 936  MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLT 995

Query: 60   SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
             +VG L  F +++  CIGC+ VL   S   A+C FC  +E + Y+ E      LE++F +
Sbjct: 996  GKVGGLLAFAKRRNCCIGCRTVL---SHQGAVCKFCQPRESELYQKEVSHLSALEERFSR 1052

Query: 120  LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1053 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1085

Possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Required with its accessory proteins (proliferating cell nuclear antigen (PCNA) and replication factor C (RFC) or activator 1) for leading strand synthesis. Also involved in completing Okazaki fragments initiated by the DNA polymerase alpha/primase complex.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1 SV=2

 Score =  205 bits (522), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 91/153 (59%), Positives = 117/153 (76%), Gaps = 4/153 (2%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
            MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AE++LLRGDHTR K V T
Sbjct: 937  MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLT 996

Query: 60   SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
             +VG L  F +++  CIGC+ VL   S   A+C FC  +E + Y+ E      LE++F +
Sbjct: 997  GKVGGLLAFAKRRNCCIGCRTVL---SHQGAVCEFCQPRESELYQKEVSHLNALEERFSR 1053

Query: 120  LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1054 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1086

Possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Required with its accessory proteins (proliferating cell nuclear antigen (PCNA) and replication factor C (RFC) or activator 1) for leading strand synthesis. Also involved in completing Okazaki fragments initiated by the DNA polymerase alpha/primase complex.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1 SV=2

 Score =  204 bits (520), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 91/153 (59%), Positives = 117/153 (76%), Gaps = 4/153 (2%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
            MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AES+LLRGDHTR K V T
Sbjct: 935  MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLT 994

Query: 60   SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
            S+VG L  F +++  CIGC+ V+       A+C FC  +E + Y+ E      LE++F +
Sbjct: 995  SKVGGLLAFTKRRNCCIGCRSVIDH---QGAVCKFCQPRESELYQKEVSHLNALEERFSR 1051

Query: 120  LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1052 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1084

Possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Required with its accessory proteins (proliferating cell nuclear antigen (PCNA) and replication factor C (RFC) or activator 1) for leading strand synthesis. Also involved in completing Okazaki fragments initiated by the DNA polymerase alpha/primase complex.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus GN=POLD1 PE=2 SV=1

 Score =  202 bits (515), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 90/153 (58%), Positives = 117/153 (76%), Gaps = 4/153 (2%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
            MK+EDP++VLE+++PID+ YYL  QL+KPL+RIF PILG+ +AES+LLRGDHTR K V T
Sbjct: 933  MKSEDPLFVLEHSLPIDTQYYLGQQLAKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLT 992

Query: 60   SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
            S+VG L  F +++  CIGC+ V++      A+C FC  +E + Y+ E      LE++F +
Sbjct: 993  SKVGGLLAFTKRRNCCIGCRSVINH---QGAVCEFCQPRESELYQKEVSHLNALEERFSR 1049

Query: 120  LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct: 1050 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1082

Possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Required with its accessory proteins (proliferating cell nuclear antigen (PCNA) and replication factor C (RFC) or activator 1) for leading strand synthesis. Also involved in completing Okazaki fragments initiated by the DNA polymerase alpha/primase complex.

Mesocricetus auratus (taxid: 10036)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster GN=DNApol-delta PE=2 SV=2

 Score =  196 bits (497), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 116/151 (76%)

Query: 2    KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
            KAEDP+YVLEN+VPID+ YYLE QLSKPL+RIF PILGD AESILL+G+HTRT+ V TS+
Sbjct: 924  KAEDPLYVLENSVPIDATYYLEQQLSKPLLRIFEPILGDNAESILLKGEHTRTRTVVTSK 983

Query: 62   VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
            VG L+ F+ KK +C+GCK ++        LC  C  +  + Y+ E    ++LE+ F +LW
Sbjct: 984  VGGLAGFMTKKTSCLGCKSLMPKGYEQACLCPHCEPRMSELYQKEVGAKRELEETFSRLW 1043

Query: 122  TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            T+CQ CQ SLHE+VIC++RDCPIFYMR+KV+
Sbjct: 1044 TECQRCQESLHEEVICSNRDCPIFYMRQKVR 1074

Possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Required with its accessory proteins (proliferating cell nuclear antigen (PCNA) and replication factor C (RFC) or activator 1) for leading strand synthesis. Also involved in completing Okazaki fragments initiated by the DNA polymerase alpha/primase complex.

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2

 Score =  185 bits (470), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/164 (55%), Positives = 114/164 (69%), Gaps = 7/164 (4%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTS 60
            M++EDPIYVLENN+PID+ YYLENQLSKPL+RIF PILG+KA S LL GDHTRT  ++  
Sbjct: 920  MRSEDPIYVLENNIPIDAKYYLENQLSKPLLRIFEPILGEKASS-LLHGDHTRTISMAAP 978

Query: 61   RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
             VG +  F  K +TC+GCK  +       ALC  CL +  + Y+ +  +   LE +F +L
Sbjct: 979  SVGGIMKFAVKVETCLGCKAPIKKGK--TALCENCLNRSAELYQRQVAQVNDLEVRFARL 1036

Query: 121  WTQCQTCQGSLHEQVICTSRDCPIFYMR----KKVQSCGHNVKR 160
            WTQCQ CQGS+H+ VICTSRDCPIFYMR    KK+Q     +KR
Sbjct: 1037 WTQCQRCQGSMHQDVICTSRDCPIFYMRIAEHKKLQQSVDLLKR 1080

This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans GN=F10C2.4 PE=3 SV=1

 Score =  173 bits (438), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 74/152 (48%), Positives = 106/152 (69%)

Query: 2    KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
            +AEDP +VL+NN+P+D+ +YL NQL+KPL RIF PILGD+AE IL+ G+HTR + V  S+
Sbjct: 908  RAEDPTFVLQNNIPLDTKHYLTNQLAKPLARIFEPILGDRAEKILVEGEHTRVRTVVQSK 967

Query: 62   VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
            VG L+ F  K  TC+GCK VL      NA+C  C  K    + +  +   +LE  F +LW
Sbjct: 968  VGGLAAFTTKSATCLGCKSVLPRAESENAVCKHCEPKLPTIFASRMNTMHELENHFGRLW 1027

Query: 122  TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQS 153
            T+CQ C  ++ ++V C++RDCPI+YMR+KV++
Sbjct: 1028 TECQNCAKTMQDKVNCSARDCPIYYMREKVRN 1059

Possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction. Required with its accessory proteins (proliferating cell nuclear antigen (PCNA) and replication factor C (RFC) or activator 1) for leading strand synthesis. Also involved in completing Okazaki fragments initiated by the DNA polymerase alpha/primase complex.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp. japonica GN=POLD1 PE=2 SV=1

 Score =  164 bits (415), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 101/151 (66%), Gaps = 3/151 (1%)

Query: 2    KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
            ++EDPIYVL+NN+PID  YYLENQ+SKPL+RIF PIL + +   LL G HTR   +ST  
Sbjct: 943  RSEDPIYVLDNNIPIDPQYYLENQISKPLLRIFEPILKNASRE-LLHGSHTRAVSISTPS 1001

Query: 62   VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
               +  F +K+ TC+GCK V+  ++    LC  C  +E + Y        +LE  F +LW
Sbjct: 1002 NSGIMKFAKKQLTCLGCKAVISGSN--QTLCFHCKGREAELYCKTVGNVSELEMLFGRLW 1059

Query: 122  TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            TQCQ CQGSLH+ V+CTSRDCPIFY R+K Q
Sbjct: 1060 TQCQECQGSLHQDVLCTSRDCPIFYRRRKAQ 1090

This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana GN=POLD1 PE=2 SV=2

 Score =  164 bits (414), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 104/151 (68%), Gaps = 5/151 (3%)

Query: 2    KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
            ++EDPIYVL+NN+PID NYYLENQ+SKPL+RIF P+L + ++  LL G HTR+  ++T  
Sbjct: 935  RSEDPIYVLQNNIPIDPNYYLENQISKPLLRIFEPVLKNASKE-LLHGSHTRSISITTPS 993

Query: 62   VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
               +  F +K+ +C+GCKV + +      LC  C  +E + Y     +  +LE+ F +LW
Sbjct: 994  NSGIMKFAKKQLSCVGCKVPISN----GTLCASCKGREAELYCKNVSQVAELEEVFGRLW 1049

Query: 122  TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            TQCQ CQGSLH+ V+CTSRDCPIFY R K Q
Sbjct: 1050 TQCQECQGSLHQDVLCTSRDCPIFYRRMKAQ 1080

This polymerase possesses two enzymatic activities: DNA synthesis (polymerase) and an exonucleolytic activity that degrades single stranded DNA in the 3'- to 5'-direction.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 7

EC: .

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
324120708	994	DNA polymerase delta catalytic subunit [	0.886	0.149	0.743	4e-63
324120712	1092	DNA polymerase delta catalytic subunit [	0.886	0.136	0.75	2e-62
324120726	1030	DNA polymerase delta catalytic subunit [	0.892	0.145	0.723	4e-62
324120736	1102	DNA polymerase delta catalytic subunit [	0.892	0.136	0.748	1e-61
324120710	992	DNA polymerase delta catalytic subunit [	0.880	0.149	0.735	2e-61
324120698	1095	DNA polymerase delta catalytic subunit [	0.904	0.138	0.718	2e-61
324120730	1033	DNA polymerase delta catalytic subunit [	0.892	0.145	0.723	3e-61
324120728	1039	DNA polymerase delta catalytic subunit [	0.886	0.143	0.741	3e-61
324120706	1088	DNA polymerase delta catalytic subunit [	0.886	0.136	0.730	4e-61
324120722	1120	DNA polymerase delta catalytic subunit [	0.886	0.133	0.710	1e-60

>gi|324120708|dbj|BAJ78745.1| DNA polymerase delta catalytic subunit [Galloisiana yuasai]

 Score =  245 bits (626), Expect = 4e-63,   Method: Compositional matrix adjust.
 Identities = 113/152 (74%), Positives = 129/152 (84%), Gaps = 3/152 (1%)

Query: 1   MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTS 60
           MKAEDPIYVLENN+PIDSNYYLENQLSKPL+RIF+PILGDKAESILLRGDHTRTK + TS
Sbjct: 828 MKAEDPIYVLENNIPIDSNYYLENQLSKPLLRIFTPILGDKAESILLRGDHTRTKSMVTS 887

Query: 61  RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
           RVGAL  F ++K+TC+GCK VL D   S ALC  C   E ++Y+ E  K+ QLE +FC+L
Sbjct: 888 RVGALFAFTRRKETCLGCKAVLPD---SGALCTHCTPNEARFYQTELTKFTQLEDRFCRL 944

Query: 121 WTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
           WTQCQ CQGSLHE+V+CTSRDCPIFYMRKKVQ
Sbjct: 945 WTQCQRCQGSLHEEVLCTSRDCPIFYMRKKVQ 976

Source: Galloisiana yuasai

Species: Galloisiana yuasai

Genus: Galloisiana

Family: Grylloblattidae

Order: Grylloblattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324120712|dbj|BAJ78747.1| DNA polymerase delta catalytic subunit [Nomadacris japonica]

 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 114/152 (75%), Positives = 131/152 (86%), Gaps = 3/152 (1%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTS 60
            MKAEDPIYVLENN+PIDS+YYLENQLSKPL+RIF+PILGDKAESILLRGDHTRTK + TS
Sbjct: 926  MKAEDPIYVLENNIPIDSSYYLENQLSKPLLRIFAPILGDKAESILLRGDHTRTKALVTS 985

Query: 61   RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
            RVGAL+ F ++K+TCIGCK VL DTS   ALC+ C   E + Y+ E  + Q LE++FC+L
Sbjct: 986  RVGALAAFTRRKETCIGCKAVLQDTS---ALCSHCRKDEVKLYQQELFRLQSLEEQFCRL 1042

Query: 121  WTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            WTQCQ CQGSLHE+VICTSRDCPIFYMRKKVQ
Sbjct: 1043 WTQCQRCQGSLHEEVICTSRDCPIFYMRKKVQ 1074

Source: Nomadacris japonica

Species: Nomadacris japonica

Genus: Nomadacris

Family: Acrididae

Order: Orthoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324120726|dbj|BAJ78754.1| DNA polymerase delta catalytic subunit [Tenodera aridifolia]

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 129/152 (84%), Gaps = 2/152 (1%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTS 60
            MKAEDPI+ LEN+VPIDS+YYLENQLSKPL+RIF+PILG+KAES+LLRGDHTRTK V TS
Sbjct: 863  MKAEDPIFALENSVPIDSSYYLENQLSKPLLRIFTPILGEKAESVLLRGDHTRTKAVVTS 922

Query: 61   RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
            RVGALS F +KK+TCIGCK VL D+     LC +C+ KE Q+Y+ E  +   LE +FC+L
Sbjct: 923  RVGALSAFTRKKETCIGCKAVLPDS--GTPLCKYCITKEAQFYQQELTRLNALEDRFCRL 980

Query: 121  WTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            WTQCQ CQGSLHE+V+CTSRDCPIFYMRKKVQ
Sbjct: 981  WTQCQNCQGSLHEEVLCTSRDCPIFYMRKKVQ 1012

Source: Tenodera aridifolia

Species: Tenodera aridifolia

Genus: Tenodera

Family: Mantidae

Order: Mantodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324120736|dbj|BAJ78759.1| DNA polymerase delta catalytic subunit [Cryptotympana facialis]

 Score =  240 bits (613), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 113/151 (74%), Positives = 127/151 (84%), Gaps = 1/151 (0%)

Query: 2    KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
            KAEDPIYVLENN+PID+NYYLENQLSKPL+RIFSPILGDKAESILLRGDHTRT+ V TSR
Sbjct: 936  KAEDPIYVLENNIPIDANYYLENQLSKPLVRIFSPILGDKAESILLRGDHTRTRAVVTSR 995

Query: 62   VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
            VGALS F   K +C+GCK VL D   S ALCN C     Q Y+ E DKY++LE KFC+LW
Sbjct: 996  VGALSKFTSVKFSCLGCKSVLPDKQTS-ALCNHCQPNVAQLYQEELDKYEELESKFCRLW 1054

Query: 122  TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            T+CQ CQGSLHE+V+C+SRDCPIFYMRKKVQ
Sbjct: 1055 TECQRCQGSLHEEVLCSSRDCPIFYMRKKVQ 1085

Source: Cryptotympana facialis

Species: Cryptotympana facialis

Genus: Cryptotympana

Family: Cicadidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324120710|dbj|BAJ78746.1| DNA polymerase delta catalytic subunit [Karoophasma biedouwense]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 111/151 (73%), Positives = 128/151 (84%), Gaps = 3/151 (1%)

Query: 2   KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
           KAEDPIYVLENN+PIDS+YYL+NQLSKPL+RIFSPILGDKAES+LLRGDHTRTK V TSR
Sbjct: 827 KAEDPIYVLENNIPIDSSYYLDNQLSKPLLRIFSPILGDKAESVLLRGDHTRTKAVVTSR 886

Query: 62  VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
           VGALS F ++K+TC+GCK VL D++   ALC  C   E Q Y+ E  K  +LE +FC+LW
Sbjct: 887 VGALSAFTRRKETCLGCKSVLADSA---ALCTHCAPNEPQLYQTELAKLNELEDRFCRLW 943

Query: 122 TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
           TQCQ CQGSLHE+V+CTSRDCPIFYMRKKVQ
Sbjct: 944 TQCQHCQGSLHEEVLCTSRDCPIFYMRKKVQ 974

Source: Karoophasma biedouwense

Species: Karoophasma biedouwense

Genus: Karoophasma

Family: Austrophasmatidae

Order: Mantophasmatodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324120698|dbj|BAJ78740.1| DNA polymerase delta catalytic subunit [Mnais pruinosa pruinosa]

 Score =  240 bits (612), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 110/153 (71%), Positives = 131/153 (85%), Gaps = 1/153 (0%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
            MKAEDPIYVLENN+PIDSNYYLENQLSKPL+RIFSPILGD KAES+LLRGDHTRTK V T
Sbjct: 925  MKAEDPIYVLENNIPIDSNYYLENQLSKPLLRIFSPILGDNKAESVLLRGDHTRTKAVVT 984

Query: 60   SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
            S+VGALS F QK++TC+GCK VL   S +  +C  C++++ + Y AE ++ Q LE++F +
Sbjct: 985  SKVGALSAFTQKRETCLGCKAVLPKESPTGPVCTHCVSRKPEIYMAELERMQALEERFSR 1044

Query: 120  LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            LWTQCQ CQGSLHE+V+CTSRDCPIFYMRKKVQ
Sbjct: 1045 LWTQCQRCQGSLHEEVLCTSRDCPIFYMRKKVQ 1077

Source: Mnais pruinosa pruinosa

Species: Mnais pruinosa

Genus: Mnais

Family: Calopterygidae

Order: Odonata

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324120730|dbj|BAJ78756.1| DNA polymerase delta catalytic subunit [Reticulitermes speratus]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 110/152 (72%), Positives = 128/152 (84%), Gaps = 2/152 (1%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTS 60
            MKAEDPIYVLEN+VPIDSNYYLENQLSKPL+RIF+PILG+KAESILLRGDHTRTK V TS
Sbjct: 866  MKAEDPIYVLENSVPIDSNYYLENQLSKPLLRIFTPILGEKAESILLRGDHTRTKAVVTS 925

Query: 61   RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
            RVGALS F Q+K+TC+GCK VL ++     LC  C+  E + Y+ E  ++  LE +FC+L
Sbjct: 926  RVGALSAFTQRKETCLGCKAVLSES--GTPLCKHCIPNEGRLYQQELARFTTLEDRFCRL 983

Query: 121  WTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            WTQCQ CQGSLHE+V+CTSRDCPIFYMRKKVQ
Sbjct: 984  WTQCQRCQGSLHEEVLCTSRDCPIFYMRKKVQ 1015

Source: Reticulitermes speratus

Species: Reticulitermes speratus

Genus: Reticulitermes

Family: Rhinotermitidae

Order: Isoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324120728|dbj|BAJ78755.1| DNA polymerase delta catalytic subunit [Blattella nipponica]

 Score =  239 bits (610), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 112/151 (74%), Positives = 126/151 (83%), Gaps = 2/151 (1%)

Query: 2    KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
            KAEDPIYVLEN+VPIDS YYLENQLSKPL+RIF PILGDKAESILLRGDHTRTK V TSR
Sbjct: 873  KAEDPIYVLENSVPIDSTYYLENQLSKPLLRIFEPILGDKAESILLRGDHTRTKAVVTSR 932

Query: 62   VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
            VGALS F +KK+TCIGCK VL D+ +   LC  CL  E Q Y+ E  ++  LE +FC+LW
Sbjct: 933  VGALSAFTRKKETCIGCKAVLSDSGVP--LCKHCLPNEAQLYQQELVRFNALEDRFCRLW 990

Query: 122  TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            T+CQ CQGSLHE+V+CTSRDCPIFYMRKKVQ
Sbjct: 991  TECQRCQGSLHEEVLCTSRDCPIFYMRKKVQ 1021

Source: Blattella nipponica

Species: Blattella nipponica

Genus: Blattella

Family: Ectobiidae

Order: Blattodea

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324120706|dbj|BAJ78744.1| DNA polymerase delta catalytic subunit [Aposthonia japonica]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 111/152 (73%), Positives = 130/152 (85%), Gaps = 3/152 (1%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTS 60
            MKAEDPIYVLEN++PIDSNYYLENQLSKPL+RIFSPILG+KAESILLRGDHTRTK + TS
Sbjct: 922  MKAEDPIYVLENSIPIDSNYYLENQLSKPLLRIFSPILGEKAESILLRGDHTRTKSMVTS 981

Query: 61   RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
            RVGAL+ F ++K+TC+GCK VL D+S   ALC  C++ E   Y++E  K   LE KFC+L
Sbjct: 982  RVGALAAFTRRKETCLGCKAVLPDSS---ALCKHCISNESLLYQSELLKLSDLENKFCRL 1038

Query: 121  WTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            WT+CQ CQGSLHE+V+CTSRDCPIFYMRKKVQ
Sbjct: 1039 WTECQRCQGSLHEEVLCTSRDCPIFYMRKKVQ 1070

Source: Aposthonia japonica

Species: Aposthonia japonica

Genus: Aposthonia

Family: Oligotomidae

Order: Embioptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|324120722|dbj|BAJ78752.1| DNA polymerase delta catalytic subunit [Forficula hiromasai]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 108/152 (71%), Positives = 126/152 (82%), Gaps = 3/152 (1%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTS 60
            MK EDPIYVLENN+PID +YYL+NQLSKPL+RIF PILGD+AESILL+GDHTRTK + TS
Sbjct: 954  MKVEDPIYVLENNIPIDFSYYLDNQLSKPLLRIFEPILGDRAESILLKGDHTRTKTLQTS 1013

Query: 61   RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
            RVGALS F Q+K+TC+GCK VL+ T    ALC FCL  E  YY  E +K  QLE +F +L
Sbjct: 1014 RVGALSAFTQRKETCLGCKTVLNTTG---ALCKFCLPNEDSYYLKEQEKLNQLETQFSRL 1070

Query: 121  WTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            WTQCQ CQGSLHE+VICT+RDCPIFY+RKK+Q
Sbjct: 1071 WTQCQNCQGSLHEEVICTNRDCPIFYLRKKIQ 1102

Source: Forficula hiromasai

Species: Forficula hiromasai

Genus: Forficula

Family: Forficulidae

Order: Dermaptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
ZFIN|ZDB-GENE-060429-1	1105	pold1 "polymerase (DNA directe	0.886	0.134	0.673	1.8e-51
RGD|621839	1103	Pold1 "polymerase (DNA directe	0.886	0.135	0.594	9.8e-47
UNIPROTKB|O54747	1103	Pold1 "DNA polymerase delta ca	0.886	0.135	0.594	9.8e-47
MGI|MGI:97741	1105	Pold1 "polymerase (DNA directe	0.886	0.134	0.594	1.6e-46
UNIPROTKB|P28339	1106	POLD1 "DNA polymerase delta ca	0.886	0.134	0.594	1.6e-46
UNIPROTKB|P28340	1107	POLD1 "DNA polymerase delta ca	0.886	0.134	0.594	1.6e-46
UNIPROTKB|F1RH32	1107	POLD1 "DNA polymerase" [Sus sc	0.886	0.134	0.594	1.6e-46
FB|FBgn0263600	1092	DNApol-delta "DNA-polymerase-d	0.898	0.138	0.589	1.8e-45
UNIPROTKB|E2R5W5	1107	POLD1 "DNA polymerase" [Canis	0.886	0.134	0.581	8.4e-45
POMBASE|SPBC336.04	1086	cdc6 "DNA polymerase delta cat	0.934	0.144	0.554	2e-43

ZFIN|ZDB-GENE-060429-1 pold1 "polymerase (DNA directed), delta 1, catalytic subunit" [Danio rerio (taxid:7955)]

 Score = 544 (196.6 bits), Expect = 1.8e-51, P = 1.8e-51
 Identities = 103/153 (67%), Positives = 121/153 (79%)

Query:     1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
             MK+EDPIYVLENN+PID+ YYLE QLSKPL+RIF PILG+ KAES+LL+GDHTR K V T
Sbjct:   941 MKSEDPIYVLENNIPIDTQYYLEQQLSKPLLRIFEPILGESKAESVLLKGDHTRCKTVLT 1000

Query:    60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
             SRVG L  F QK+ TCIGC+ VL  T +  A+C+FC  +E + Y+ E      LE+KF +
Sbjct:  1001 SRVGGLMAFAQKRSTCIGCRAVLK-TDV--AVCDFCKKRESELYQKEIAHLSTLEEKFSR 1057

Query:   120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
             LWTQCQ CQGSLHE V+CTSRDCPIFYMRKKVQ
Sbjct:  1058 LWTQCQRCQGSLHEDVLCTSRDCPIFYMRKKVQ 1090

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;IBA

GO:0006260 "DNA replication" evidence=IEA;IMP

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IBA

GO:0007346 "regulation of mitotic cell cycle" evidence=IBA

GO:0019985 "translesion synthesis" evidence=IBA

GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA

GO:0045004 "DNA replication proofreading" evidence=IBA

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=IBA

GO:0043625 "delta DNA polymerase complex" evidence=IBA

GO:0005634 "nucleus" evidence=IBA

GO:0006287 "base-excision repair, gap-filling" evidence=IBA

GO:0000084 "S phase of mitotic cell cycle" evidence=IBA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

RGD|621839 Pold1 "polymerase (DNA directed), delta 1, catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 500 (181.1 bits), Expect = 9.8e-47, P = 9.8e-47
 Identities = 91/153 (59%), Positives = 118/153 (77%)

Query:     1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
             MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AES+LLRGDHTR K V T
Sbjct:   933 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLT 992

Query:    60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
             S+VG L  F +++ +CIGC+ V+       A+C FC  +E + Y+ E      LE++F +
Sbjct:   993 SKVGGLLAFTKRRNSCIGCRSVIDH---QGAVCKFCQPRESELYQKEVSHLNALEERFSR 1049

Query:   120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
             LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct:  1050 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1082

GO:0000084 "S phase of mitotic cell cycle" evidence=IEA;ISO;IBA

GO:0000109 "nucleotide-excision repair complex" evidence=IEA;ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA;ISO

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0003682 "chromatin binding" evidence=IEA;ISO

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA;ISO;IMP;IDA

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=ISO;IBA

GO:0006260 "DNA replication" evidence=ISO

GO:0006261 "DNA-dependent DNA replication" evidence=IMP;IDA

GO:0006287 "base-excision repair, gap-filling" evidence=IEA;ISO;IBA

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=IEA;ISO;IBA

GO:0007346 "regulation of mitotic cell cycle" evidence=IBA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA;ISO;IBA

GO:0019985 "translesion synthesis" evidence=IBA

GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA

GO:0043625 "delta DNA polymerase complex" evidence=IC;IBA

GO:0045004 "DNA replication proofreading" evidence=IEA;ISO;IBA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|O54747 Pold1 "DNA polymerase delta catalytic subunit" [Rattus norvegicus (taxid:10116)]

 Score = 500 (181.1 bits), Expect = 9.8e-47, P = 9.8e-47
 Identities = 91/153 (59%), Positives = 118/153 (77%)

Query:     1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
             MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AES+LLRGDHTR K V T
Sbjct:   933 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLT 992

Query:    60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
             S+VG L  F +++ +CIGC+ V+       A+C FC  +E + Y+ E      LE++F +
Sbjct:   993 SKVGGLLAFTKRRNSCIGCRSVIDH---QGAVCKFCQPRESELYQKEVSHLNALEERFSR 1049

Query:   120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
             LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct:  1050 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1082

GO:0000166 "nucleotide binding" evidence=IEA

MGI|MGI:97741 Pold1 "polymerase (DNA directed), delta 1, catalytic subunit" [Mus musculus (taxid:10090)]

 Score = 498 (180.4 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 91/153 (59%), Positives = 117/153 (76%)

Query:     1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
             MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AES+LLRGDHTR K V T
Sbjct:   935 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAESVLLRGDHTRCKTVLT 994

Query:    60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
             S+VG L  F +++  CIGC+ V+       A+C FC  +E + Y+ E      LE++F +
Sbjct:   995 SKVGGLLAFTKRRNCCIGCRSVIDH---QGAVCKFCQPRESELYQKEVSHLNALEERFSR 1051

Query:   120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
             LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct:  1052 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1084

GO:0000084 "S phase of mitotic cell cycle" evidence=ISO;IBA

GO:0000109 "nucleotide-excision repair complex" evidence=ISO

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISO

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003677 "DNA binding" evidence=ISO

GO:0003682 "chromatin binding" evidence=ISO

GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO;IBA

GO:0004518 "nuclease activity" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IBA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0006260 "DNA replication" evidence=ISO

GO:0006261 "DNA-dependent DNA replication" evidence=ISO

GO:0006287 "base-excision repair, gap-filling" evidence=ISO;IMP

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=ISO;IBA

GO:0007346 "regulation of mitotic cell cycle" evidence=IBA

GO:0008408 "3'-5' exonuclease activity" evidence=IMP

GO:0016740 "transferase activity" evidence=IEA

GO:0016779 "nucleotidyltransferase activity" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA

GO:0043625 "delta DNA polymerase complex" evidence=IBA

GO:0045004 "DNA replication proofreading" evidence=IMP

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

UNIPROTKB|P28339 POLD1 "DNA polymerase delta catalytic subunit" [Bos taurus (taxid:9913)]

 Score = 498 (180.4 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 91/153 (59%), Positives = 117/153 (76%)

Query:     1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
             MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AE++LLRGDHTR K V T
Sbjct:   936 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLT 995

Query:    60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
              +VG L  F +++  CIGC+ VL   S   A+C FC  +E + Y+ E      LE++F +
Sbjct:   996 GKVGGLLAFAKRRNCCIGCRTVL---SHQGAVCKFCQPRESELYQKEVSHLSALEERFSR 1052

Query:   120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
             LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct:  1053 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1085

GO:0006260 "DNA replication" evidence=TAS

GO:0005634 "nucleus" evidence=IC

GO:0003887 "DNA-directed DNA polymerase activity" evidence=TAS

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004527 "exonuclease activity" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|P28340 POLD1 "DNA polymerase delta catalytic subunit" [Homo sapiens (taxid:9606)]

 Score = 498 (180.4 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 91/153 (59%), Positives = 117/153 (76%)

Query:     1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
             MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AE++LLRGDHTR K V T
Sbjct:   937 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLT 996

Query:    60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
              +VG L  F +++  CIGC+ VL   S   A+C FC  +E + Y+ E      LE++F +
Sbjct:   997 GKVGGLLAFAKRRNCCIGCRTVL---SHQGAVCEFCQPRESELYQKEVSHLNALEERFSR 1053

Query:   120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
             LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct:  1054 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1086

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

GO:0007346 "regulation of mitotic cell cycle" evidence=IBA

GO:0008408 "3'-5' exonuclease activity" evidence=IBA

GO:0019985 "translesion synthesis" evidence=IBA

GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA

GO:0043625 "delta DNA polymerase complex" evidence=IBA

GO:0045004 "DNA replication proofreading" evidence=IBA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000731 "DNA synthesis involved in DNA repair" evidence=IDA;IMP

GO:0003677 "DNA binding" evidence=IDA

GO:0000084 "S phase of mitotic cell cycle" evidence=IDA;TAS

GO:0003682 "chromatin binding" evidence=IDA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IMP

GO:0006260 "DNA replication" evidence=IMP

GO:0006287 "base-excision repair, gap-filling" evidence=IDA

GO:0000109 "nucleotide-excision repair complex" evidence=IDA

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=IC;IMP;TAS

GO:0009411 "response to UV" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0000722 "telomere maintenance via recombination" evidence=TAS

GO:0000723 "telomere maintenance" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006271 "DNA strand elongation involved in DNA replication" evidence=TAS

GO:0006281 "DNA repair" evidence=TAS

GO:0006283 "transcription-coupled nucleotide-excision repair" evidence=TAS

GO:0006284 "base-excision repair" evidence=TAS

GO:0006289 "nucleotide-excision repair" evidence=TAS

GO:0032201 "telomere maintenance via semi-conservative replication" evidence=TAS

UNIPROTKB|F1RH32 POLD1 "DNA polymerase" [Sus scrofa (taxid:9823)]

 Score = 498 (180.4 bits), Expect = 1.6e-46, P = 1.6e-46
 Identities = 91/153 (59%), Positives = 117/153 (76%)

Query:     1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
             MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AE++LLRGDHTR K V T
Sbjct:   937 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLT 996

Query:    60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
              +VG L  F +++  CIGC+ VL   S   A+C FC  +E + Y+ E      LE++F +
Sbjct:   997 GKVGGLLAFAKRRNCCIGCRTVL---SHQGAVCKFCQPRESELYQKEVSHLNALEERFSR 1053

Query:   120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
             LWTQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct:  1054 LWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1086

GO:0045004 "DNA replication proofreading" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=IEA

GO:0006287 "base-excision repair, gap-filling" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

GO:0000084 "S phase of mitotic cell cycle" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

FB|FBgn0263600 DNApol-delta "DNA-polymerase-delta" [Drosophila melanogaster (taxid:7227)]

 Score = 488 (176.8 bits), Expect = 1.8e-45, P = 1.8e-45
 Identities = 89/151 (58%), Positives = 116/151 (76%)

Query:     2 KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
             KAEDP+YVLEN+VPID+ YYLE QLSKPL+RIF PILGD AESILL+G+HTRT+ V TS+
Sbjct:   924 KAEDPLYVLENSVPIDATYYLEQQLSKPLLRIFEPILGDNAESILLKGEHTRTRTVVTSK 983

Query:    62 VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLW 121
             VG L+ F+ KK +C+GCK ++        LC  C  +  + Y+ E    ++LE+ F +LW
Sbjct:   984 VGGLAGFMTKKTSCLGCKSLMPKGYEQACLCPHCEPRMSELYQKEVGAKRELEETFSRLW 1043

Query:   122 TQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
             T+CQ CQ SLHE+VIC++RDCPIFYMR+KV+
Sbjct:  1044 TECQRCQESLHEEVICSNRDCPIFYMRQKVR 1074

GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS;NAS;IDA

GO:0043625 "delta DNA polymerase complex" evidence=ISS;IDA

GO:0008296 "3'-5'-exodeoxyribonuclease activity" evidence=IDA

GO:0006273 "lagging strand elongation" evidence=NAS

GO:0006272 "leading strand elongation" evidence=NAS

GO:0008310 "single-stranded DNA specific 3'-5' exodeoxyribonuclease activity" evidence=NAS

GO:0006260 "DNA replication" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0006974 "response to DNA damage stimulus" evidence=IMP

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|E2R5W5 POLD1 "DNA polymerase" [Canis lupus familiaris (taxid:9615)]

 Score = 482 (174.7 bits), Expect = 8.4e-45, P = 8.4e-45
 Identities = 89/153 (58%), Positives = 115/153 (75%)

Query:     1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD-KAESILLRGDHTRTKIVST 59
             MK+EDP++VLE+++PID+ YYLE QL+KPL+RIF PILG+ +AE++LLRGDHTR K V T
Sbjct:   937 MKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLT 996

Query:    60 SRVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQ 119
              +VG L  F ++   CIGC+ VL+      A+C FC  +E + Y+ E      LE++F +
Sbjct:   997 GKVGGLLAFAKRHSCCIGCRTVLNH---QGAVCKFCQPRESELYQKEVSHLNALERRFSR 1053

Query:   120 LWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
             L TQCQ CQGSLHE VICTSRDCPIFYMRKKV+
Sbjct:  1054 LCTQCQRCQGSLHEDVICTSRDCPIFYMRKKVR 1086

GO:0045004 "DNA replication proofreading" evidence=IEA

GO:0008408 "3'-5' exonuclease activity" evidence=IEA

GO:0006297 "nucleotide-excision repair, DNA gap filling" evidence=IEA

GO:0006287 "base-excision repair, gap-filling" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0000731 "DNA synthesis involved in DNA repair" evidence=IEA

GO:0000109 "nucleotide-excision repair complex" evidence=IEA

GO:0000084 "S phase of mitotic cell cycle" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

POMBASE|SPBC336.04 cdc6 "DNA polymerase delta catalytic subunit Cdc6" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 469 (170.2 bits), Expect = 2.0e-43, P = 2.0e-43
 Identities = 91/164 (55%), Positives = 114/164 (69%)

Query:     1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTS 60
             M++EDPIYVLENN+PID+ YYLENQLSKPL+RIF PILG+KA S LL GDHTRT  ++  
Sbjct:   920 MRSEDPIYVLENNIPIDAKYYLENQLSKPLLRIFEPILGEKASS-LLHGDHTRTISMAAP 978

Query:    61 RVGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQL 120
              VG +  F  K +TC+GCK  +       ALC  CL +  + Y+ +  +   LE +F +L
Sbjct:   979 SVGGIMKFAVKVETCLGCKAPIKKGK--TALCENCLNRSAELYQRQVAQVNDLEVRFARL 1036

Query:   121 WTQCQTCQGSLHEQVICTSRDCPIFYMR----KKVQSCGHNVKR 160
             WTQCQ CQGS+H+ VICTSRDCPIFYMR    KK+Q     +KR
Sbjct:  1037 WTQCQRCQGSMHQDVICTSRDCPIFYMRIAEHKKLQQSVDLLKR 1080

GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0008408 "3'-5' exonuclease activity" evidence=IC

GO:0010972 "negative regulation of G2/M transition of mitotic cell cycle" evidence=IMP

GO:0043137 "DNA replication, removal of RNA primer" evidence=TAS

GO:0043596 "nuclear replication fork" evidence=IC

GO:0043625 "delta DNA polymerase complex" evidence=TAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LRE6	DPOD1_ORYSJ	2, ., 7, ., 7, ., 7	0.5165	0.8809	0.1339	yes	N/A
P52431	DPOD1_MOUSE	2, ., 7, ., 7, ., 7	0.5947	0.8869	0.1348	yes	N/A
P54358	DPOD1_DROME	2, ., 7, ., 7, ., 7	0.5894	0.8988	0.1382	yes	N/A
Q9LVN7	DPOD1_ARATH	2, ., 7, ., 7, ., 7	0.5033	0.8690	0.1333	yes	N/A
O54747	DPOD1_RAT	2, ., 7, ., 7, ., 7	0.5947	0.8869	0.1350	yes	N/A
P28339	DPOD1_BOVIN	2, ., 7, ., 7, ., 7	0.5947	0.8869	0.1347	yes	N/A
P30316	DPOD_SCHPO	2, ., 7, ., 7, ., 7	0.5548	0.9345	0.1445	yes	N/A
P28340	DPOD1_HUMAN	2, ., 7, ., 7, ., 7	0.5947	0.8869	0.1345	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	168
PTZ00166	1054	PTZ00166, PTZ00166, DNA polymerase delta catalytic	1e-60
pfam14260	73	pfam14260, zf-C4pol, C4-type zinc-finger of DNA po	3e-22
cd05533	393	cd05533, POLBc_delta, DNA polymerase type-B delta	6e-21
COG0417	792	COG0417, PolB, DNA polymerase elongation subunit (	9e-10
pfam00136	458	pfam00136, DNA_pol_B, DNA polymerase family B	1e-08
cd00145	323	cd00145, POLBc, DNA polymerase type-B family catal	2e-04

>gnl|CDD|240301 PTZ00166, PTZ00166, DNA polymerase delta catalytic subunit; Provisional

 Score =  201 bits (514), Expect = 1e-60
 Identities = 78/152 (51%), Positives = 104/152 (68%), Gaps = 8/152 (5%)

Query: 2    KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
            +AEDP+YVLENN+PID+ YYL+ Q+  PL+RIF  ++ +     L  G+HTR   +S+S 
Sbjct: 893  RAEDPLYVLENNIPIDTQYYLD-QIKNPLLRIFEGVMDNP--DSLFSGEHTRHITISSSS 949

Query: 62   VGALSMFVQKKQTCIGCKVVLHDTSLSNALCNFC-LAKEKQYYEAENDKYQQLEKKFCQL 120
             G LS FV+K+  C+GCK V+ +     ALC+ C   KE   Y  +  K +  E ++ QL
Sbjct: 950  KGGLSKFVKKQLQCLGCKSVIKE----GALCDNCNQNKEPSIYGKKLAKRRHKEAEYSQL 1005

Query: 121  WTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQ 152
            WTQCQ CQGSLH++VICT+RDCPIFY RKKVQ
Sbjct: 1006 WTQCQRCQGSLHQEVICTNRDCPIFYRRKKVQ 1037

Length = 1054

>gnl|CDD|222632 pfam14260, zf-C4pol, C4-type zinc-finger of DNA polymerase delta

 Score = 84.4 bits (209), Expect = 3e-22
 Identities = 32/75 (42%), Positives = 45/75 (60%), Gaps = 2/75 (2%)

Query: 75  CIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQ 134
           C+ C   L +    + LC  CL   +        + ++LE++F +LWT CQ CQGSLHE+
Sbjct: 1   CLVCGKKLKEGE--SPLCKNCLRNPQASLYKLLSRLRELERRFSRLWTICQRCQGSLHEE 58

Query: 135 VICTSRDCPIFYMRK 149
           V+C SRDCP+FY R 
Sbjct: 59  VLCDSRDCPVFYKRV 73

In fission yeast this zinc-finger domain appears is the region of Pol3 that binds directly to the B-subunit, Cdc1. Pol delta is a hetero-tetrameric enzyme comprising four evolutionarily well-conserved proteins: the catalytic subunit Pol3 and three smaller subunits Cdc1, Cdc27 and Cdm1. Length = 73

>gnl|CDD|99916 cd05533, POLBc_delta, DNA polymerase type-B delta subfamily catalytic domain

 Score = 87.3 bits (217), Expect = 6e-21
 Identities = 32/38 (84%), Positives = 35/38 (92%)

Query: 1   MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPIL 38
            KAEDPIYVLENN+PID+ YYLENQLSKPL+RIF PIL
Sbjct: 356 EKAEDPIYVLENNIPIDTQYYLENQLSKPLLRIFEPIL 393

Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. Presently, no direct data is available regarding the strand specificity of DNA polymerase during DNA replication in vivo. However, mutation analysis supports the hypothesis that DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. Length = 393

>gnl|CDD|223494 COG0417, PolB, DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]

 Score = 55.9 bits (135), Expect = 9e-10
 Identities = 21/46 (45%), Positives = 24/46 (52%)

Query: 1   MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESIL 46
            +AE P  V E N PID  YY+  QL   L RI  PI G+ AE   
Sbjct: 736 ERAEPPELVDEENSPIDYEYYITKQLLPALERILEPIGGNFAELKG 781

Length = 792

>gnl|CDD|215742 pfam00136, DNA_pol_B, DNA polymerase family B

 Score = 52.7 bits (127), Expect = 1e-08
 Identities = 24/44 (54%), Positives = 28/44 (63%), Gaps = 1/44 (2%)

Query: 2   KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESI 45
            AEDP YVLEN +PID+ YYL+NQL  P+ RIF  I      S 
Sbjct: 405 LAEDPEYVLEN-LPIDAEYYLDNQLVPPVERIFEAIFFGDVISW 447

This region of DNA polymerase B appears to consist of more than one structural domain, possibly including elongation, DNA-binding and dNTP binding activities. Length = 458

>gnl|CDD|99912 cd00145, POLBc, DNA polymerase type-B family catalytic domain

 Score = 40.0 bits (94), Expect = 2e-04
 Identities = 15/33 (45%), Positives = 18/33 (54%)

Query: 3   AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFS 35
           A+ P+  L+    ID  YYLE  L  PL RIF 
Sbjct: 291 ADPPLEDLDKRHRIDYEYYLERLLQPPLERIFE 323

DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is made up of distinct domains and sub-domains. The polymerase domain of DNA polymerase type B (Pol domain) is responsible for the template-directed polymerization of dNTPs onto the growing primer strand of duplex DNA that is usually magnesium dependent. In general, the architecture of the Pol domain has been likened to a right hand with fingers, thumb, and palm sub-domains with a deep groove to accommodate the nucleic acid substrate. There are a few conserved motifs in the Pol domain of family B DNA polymerases. The conserved aspartic acid residues in the DTDS motifs of the palm sub-domain is crucial for binding to divalent metal ion and is suggested to be important for polymerase catalysis. Length = 323

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
PTZ00166	1054	DNA polymerase delta catalytic subunit; Provisiona	100.0
KOG0969|consensus	1066		100.0
KOG0968|consensus	1488		99.96
PF14260	73	zf-C4pol: C4-type zinc-finger of DNA polymerase de	99.87
KOG0970|consensus	1429		99.09
PF00136	466	DNA_pol_B: DNA polymerase family B Several related	98.17
COG0417	792	PolB DNA polymerase elongation subunit (family B)	98.15
PF08996	188	zf-DNA_Pol: DNA Polymerase alpha zinc finger; Inte	95.45
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	89.96
PF13248	26	zf-ribbon_3: zinc-ribbon domain	88.45
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	85.74
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	85.11

>PTZ00166 DNA polymerase delta catalytic subunit; Provisional

Probab=100.00  E-value=1.9e-36  Score=284.29  Aligned_cols=153  Identities=51%  Similarity=0.974  Sum_probs=143.3

Q ss_pred             CCCCChHHHhhcCCCCChhHHhhcccchHHHHHhcccccchhHHHhhhcCCcceeeeecCccccccccccccccccccCc
Q psy12448          1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKV   80 (168)
Q Consensus         1 ~~a~~P~~~l~~~l~lD~~YYI~kqiipPL~Rif~~i~~d~~~~w~~~~~~~r~~~~~~~~~~~i~~f~~~s~~C~~C~~   80 (168)
                      |||++|+++++++++||++|||+ ||+|||+|||++||+| +.+||. |+|+|...+.++++++|++|++++.+|++|+.
T Consensus       892 ~ra~~p~~~~~~~~~iD~~YYi~-ql~~pl~Ri~~~i~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~c~~c~~  968 (1054)
T PTZ00166        892 ERAEDPLYVLENNIPIDTQYYLD-QIKNPLLRIFEGVMDN-PDSLFS-GEHTRHITISSSSKGGLSKFVKKQLQCLGCKS  968 (1054)
T ss_pred             hhccCHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHhhcC-HHHHhc-cCccceeeecCCCcccHHHHHhcCcccCCCCC
Confidence            68999999999999999999999 9999999999999999 699986 89999988877888999999988999999999


Q ss_pred             ccccCCCCCcCCccc-cCChHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCcccCcCCCCCccceecccccccchhH
Q psy12448         81 VLHDTSLSNALCNFC-LAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGHNVK  159 (168)
Q Consensus        81 ~~~~~~~~~~lC~~C-~~~~~~~~~~l~~~~~~~e~~~~~~~~~C~~C~~~~~~~~~C~s~dCpv~Y~R~k~~~~l~~~~  159 (168)
                      ++..    +++|.+| ..++++++..+..+++.+|.++..+|++||+|+|+++.++.|.|.||||||+|.|++++|++++
T Consensus       969 ~~~~----~~~c~~c~~~~~~~~~~~~~~~~~~~e~~~~~~~~~c~~c~g~~~~~~~c~~~dc~i~y~r~k~~~~~~~~~ 1044 (1054)
T PTZ00166        969 VIKE----GALCDNCNQNKEPSIYGKKLAKRRHKEAEYSQLWTQCQRCQGSLHQEVICTNRDCPIFYRRKKVQKDLAELQ 1044 (1054)
T ss_pred             CCCC----CCcCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccCCCCchhheehhHHHHHHHHH
Confidence            9864    5899999 7888899999999999999999999999999999999999999999999999999999998876


Q ss_pred             H
Q psy12448        160 R  160 (168)
Q Consensus       160 ~  160 (168)
                      .
T Consensus      1045 ~ 1045 (1054)
T PTZ00166       1045 E 1045 (1054)
T ss_pred             H
Confidence            4

>KOG0969|consensus

Probab=100.00  E-value=2.7e-36  Score=267.98  Aligned_cols=156  Identities=59%  Similarity=1.074  Sum_probs=147.5

Q ss_pred             CCCCChHHHhhcCCCCChhHHhhcccchHHHHHhcccccchhHHHhhhcCCcceeeeecCccccccccccccccccccCc
Q psy12448          1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQKKQTCIGCKV   80 (168)
Q Consensus         1 ~~a~~P~~~l~~~l~lD~~YYI~kqiipPL~Rif~~i~~d~~~~w~~~~~~~r~~~~~~~~~~~i~~f~~~s~~C~~C~~   80 (168)
                      +|+|||.+|++||++||+.|||++||..||.|||+||.+| +++-+..|+|+|...+.++++|+|+.|.+++.+|++|+.
T Consensus       900 ~rsEDP~fVLenNipiD~~yYL~nQlsKPllrIfePILg~-~~~~l~~g~htR~~~v~~~~~gGl~~F~kk~~tC~gCk~  978 (1066)
T KOG0969|consen  900 ERSEDPLYVLENNIPIDTRYYLENQLSKPLLRIFEPILGD-AEKELLRGDHTRTITVTTSKVGGLMAFAKKVETCLGCKA  978 (1066)
T ss_pred             cCCCCCeEEecCCCCcchHHHHhhhhhhhHHHHhhhhhCc-hhhccccccceeEEEeecccccchhhhhhhccccccccc
Confidence            5899999999999999999999999999999999999998 576677899999999988899999999999999999999


Q ss_pred             ccccCCCCCcCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCcccCcCCCCCccceecccccccchhH
Q psy12448         81 VLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRKKVQSCGHNVK  159 (168)
Q Consensus        81 ~~~~~~~~~~lC~~C~~~~~~~~~~l~~~~~~~e~~~~~~~~~C~~C~~~~~~~~~C~s~dCpv~Y~R~k~~~~l~~~~  159 (168)
                      ++..+  ..++|.+|..+.++++.+.....+.+|.+|..+|+.||+|+|+.|+.+.|+|.||||||+|.|+.++|++..
T Consensus       979 ~~~~~--~~~~C~~C~~r~~~lyqk~v~~~~~lee~fsrlWt~Cqrcqgs~h~~vic~~rdCpifymr~kv~keL~~~~ 1055 (1066)
T KOG0969|consen  979 PLRKG--EQALCENCLPRSSELYQKQVSHVNDLEEKFSRLWTECQRCQGSLHEEVICSNRDCPIFYMRQKVRKELQEQV 1055 (1066)
T ss_pred             ccccc--cchhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhheeccCCCCchhhHHHHHHHHHHHH
Confidence            99875  456999999999999999999999999999999999999999999999999999999999999999998764

>KOG0968|consensus

Probab=99.96  E-value=7.1e-31  Score=239.92  Aligned_cols=154  Identities=30%  Similarity=0.492  Sum_probs=130.1

Q ss_pred             CCCCChHHHhhc-CCCCChhHHhhcccchHHHHHhcccccchhHHHhhhcCCcceeeeec------Cccccccccccccc
Q psy12448          1 MKAEDPIYVLEN-NVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVST------SRVGALSMFVQKKQ   73 (168)
Q Consensus         1 ~~a~~P~~~l~~-~l~lD~~YYI~kqiipPL~Rif~~i~~d~~~~w~~~~~~~r~~~~~~------~~~~~i~~f~~~s~   73 (168)
                      +++++|+++|++ .++||+.|||+|||||||.|+|++||+| +.+||  .++||.++.+.      ...++|+.|+. +.
T Consensus      1318 ~~vvsP~efL~~~~~rLn~~YYINk~iiPpL~Rvf~LiG~~-v~~W~--~Empk~krtS~~~te~e~~~~tid~f~t-s~ 1393 (1488)
T KOG0968|consen 1318 SRVVSPEEFLRNPTYRLNTFYYINKQIIPPLDRVFNLIGAD-VDSWY--HEMPKSKRTSLKLTETEKGGITIDTFVT-SK 1393 (1488)
T ss_pred             HHhcCHHHHhcCCceeccceeeehhhccchHHHHhhhcccc-hhhHH--HhccccccccccccccccCCceeeEEEe-ec
Confidence            468899999997 4999999999999999999999999999 69999  46666433321      23347899996 89


Q ss_pred             cccccCcccccCCCCCcCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHcccccCCC---CCcccCcCCCCCccceecc
Q psy12448         74 TCIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSL---HEQVICTSRDCPIFYMRKK  150 (168)
Q Consensus        74 ~C~~C~~~~~~~~~~~~lC~~C~~~~~~~~~~l~~~~~~~e~~~~~~~~~C~~C~~~~---~~~~~C~s~dCpv~Y~R~k  150 (168)
                      +|..|-..+.    +..+|.+|+++|+.+++.+..+.+++|+++.++.++|++|+|..   +..+.|.|++|||||.|.|
T Consensus      1394 hC~~c~~~~~----~~~lC~~Clqnp~~~a~~~v~~~~~l~re~~~L~~iCr~Cs~~~~~~~~~v~C~S~~C~V~y~r~k 1469 (1488)
T KOG0968|consen 1394 HCSSCCSRIG----STQLCSDCLQNPSATALALVQKGRELERERSQLITICRSCSGSSQRDGQVVKCNSLTCPVFYTRSK 1469 (1488)
T ss_pred             cccchhcccc----cchhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccCchhhhHHH
Confidence            9999844443    36899999999999999999999999999999999999999954   3478999999999999999


Q ss_pred             cccccc-hhHHHh
Q psy12448        151 VQSCGH-NVKRAR  162 (168)
Q Consensus       151 ~~~~l~-~~~~~~  162 (168)
                      +++++. ++..++
T Consensus      1470 ~er~l~~qae~~~ 1482 (1488)
T KOG0968|consen 1470 VERYLRAQAETAH 1482 (1488)
T ss_pred             HHHHHHhhHHHHH
Confidence            999998 444443

>PF14260 zf-C4pol: C4-type zinc-finger of DNA polymerase delta

Probab=99.87  E-value=4.2e-22  Score=133.26  Aligned_cols=73  Identities=38%  Similarity=0.869  Sum_probs=69.0

Q ss_pred             ccccCcccccCCCCCcCCccccCChHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCcccCcCCCCCccceec
Q psy12448         75 CIGCKVVLHDTSLSNALCNFCLAKEKQYYEAENDKYQQLEKKFCQLWTQCQTCQGSLHEQVICTSRDCPIFYMRK  149 (168)
Q Consensus        75 C~~C~~~~~~~~~~~~lC~~C~~~~~~~~~~l~~~~~~~e~~~~~~~~~C~~C~~~~~~~~~C~s~dCpv~Y~R~  149 (168)
                      |++||++++.+  +++||++|+.+++.+++.++.+++..|+++.++|.+|++|+|+.+.++.|+|+||||||+|+
T Consensus         1 C~~C~~~~~~~--~~~lC~~C~~~~~~~~~~l~~~~~~~E~~~~~l~~iC~~C~~~~~~~~~C~s~DCpV~Y~R~   73 (73)
T PF14260_consen    1 CLVCGAKTQEG--ESPLCSNCRSDPQQTIYNLLSRLRELERRFNELWTICQSCSGSLHEEIECDSLDCPVFYERV   73 (73)
T ss_pred             CCCCCCcCCCC--CCCcCcccCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcccCCCCCcceeeC
Confidence            89999999874  35999999999999999999999999999999999999999998899999999999999995

>KOG0970|consensus

Probab=99.09  E-value=1.1e-10  Score=108.58  Aligned_cols=127  Identities=23%  Similarity=0.365  Sum_probs=90.9

Q ss_pred             CCCCChHHHhhc--CCCCChhHHhhcccchHHHHHhcccccchh---HHHhhhcCCcceeeeecCc----------cccc
Q psy12448          1 MKAEDPIYVLEN--NVPIDSNYYLENQLSKPLIRIFSPILGDKA---ESILLRGDHTRTKIVSTSR----------VGAL   65 (168)
Q Consensus         1 ~~a~~P~~~l~~--~l~lD~~YYI~kqiipPL~Rif~~i~~d~~---~~w~~~~~~~r~~~~~~~~----------~~~i   65 (168)
                      +||++|.++..+  +|.||+.|||.+||.||++|+.++|.|.++   .+||  |..++..+....+          -.++
T Consensus      1167 ~RAyh~~e~~~~~~~l~iD~~YYLa~QIhPvV~Rlve~Iegt~a~riae~L--GlDstkyr~~~~~q~~~~a~s~~~s~~ 1244 (1429)
T KOG0970|consen 1167 ERAYHPDEVMPDEDNLAIDYNYYLAQQIHPVVERLVEPIEGTDAVRIAECL--GLDSTKYRRHEGNQKENSALSPDESTL 1244 (1429)
T ss_pred             hcccChHhhCccCcceeechhhHhhhhcchhHHHHhhhhcccCHHHHHHHh--CCCchhhhhhhcchhhhhhhCCCcchh
Confidence            589999999974  499999999999999999999999998422   3676  7666554321100          0111


Q ss_pred             ---cccc---cccccccccCcccccC------C------CCCcCCccccCCh----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy12448         66 ---SMFV---QKKQTCIGCKVVLHDT------S------LSNALCNFCLAKE----KQYYEAENDKYQQLEKKFCQLWTQ  123 (168)
Q Consensus        66 ---~~f~---~~s~~C~~C~~~~~~~------~------~~~~lC~~C~~~~----~~~~~~l~~~~~~~e~~~~~~~~~  123 (168)
                         .+|+   .....|+.|+.+....      +      ....-|..|...+    ..+..++..+++..-.+|+..|.+
T Consensus      1245 td~~~~~~ce~~~l~CptC~~~~~~~~~~~~~s~~~~~~~l~~~Ca~Cq~~~~~~~~~i~nq~~~qir~fV~~yy~g~lv 1324 (1429)
T KOG0970|consen 1245 TDVERFKDCEPLTLRCPTCSTENSRAFAVDKVSEMSRKEVLSLYCARCQQEPIESPASITNQVERQIRCFVSLYYLGWLV 1324 (1429)
T ss_pred             cchhhhccccceEEECCCCCCcccccccccCcccchhhhHhhhcChhhhcCCccchHHHHHHHHHHHHHHHHHHhhhhee
Confidence               2442   1368999998765532      0      0133488998766    355666778889999999999999


Q ss_pred             cc--cccC
Q psy12448        124 CQ--TCQG  129 (168)
Q Consensus       124 C~--~C~~  129 (168)
                      |.  +|..
T Consensus      1325 Cdd~tC~~ 1332 (1429)
T KOG0970|consen 1325 CDDPTCGF 1332 (1429)
T ss_pred             ecCccccc
Confidence            98  7776

>PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included

Probab=98.17  E-value=8.6e-07  Score=77.84  Aligned_cols=40  Identities=55%  Similarity=0.870  Sum_probs=36.3

Q ss_pred             CCCCChHHHhhcCCCCChhHHhhcccchHHHHHhcccccc
Q psy12448          1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD   40 (168)
Q Consensus         1 ~~a~~P~~~l~~~l~lD~~YYI~kqiipPL~Rif~~i~~d   40 (168)
                      +++++|+++.+++++||++|||++||+|||+|+|++++.+
T Consensus       411 ~~~~~~~~~~~~~~~iD~~yYi~~ql~~pl~ril~~~~~~  450 (466)
T PF00136_consen  411 ERAEDPEYVKENNLPIDYEYYIEKQLLPPLERILEPLGWN  450 (466)
T ss_dssp             CSEETTTHHHHTTS-BSHHHHHHTTHHHHHHHHHHTCTTT
T ss_pred             hhccChhhhhccCCCcchHHHHhhccHHHHHHHHHHhcCC
Confidence            5788999999989999999999999999999999999886

; InterPro: IPR006134 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known, however, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain of DNA polymerase B appears to consist of more than one activities, possibly including elongation, DNA-binding and dNTP binding [].; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 1NOY_A 1NOZ_B 2CW7_A 2CW8_A 1WNS_A 2XHB_A 2VWK_A 2VWJ_A 1TGO_A ....

>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]

Probab=98.15  E-value=9.6e-07  Score=82.34  Aligned_cols=45  Identities=42%  Similarity=0.616  Sum_probs=40.3

Q ss_pred             CCCCChHHHhhcCCCCChhHHhhcccchHHHHHhcccccchhHHHh
Q psy12448          1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESIL   46 (168)
Q Consensus         1 ~~a~~P~~~l~~~l~lD~~YYI~kqiipPL~Rif~~i~~d~~~~w~   46 (168)
                      +||+.|..+.+++++||++||++|||+||++||+++||++ ..+|.
T Consensus       736 ~ra~~~~~~~~~~~~iD~~YY~~~Ql~~~~~ril~~i~~~-~~~~~  780 (792)
T COG0417         736 ERAEPPELVDEENSPIDYEYYITKQLLPALERILEPIGGN-FAELK  780 (792)
T ss_pred             ccccCceecccccccCCHHHHHhccchHHHHHHHHHhccc-Hhhhc
Confidence            5788888888888999999999999999999999999998 46655

>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.45  E-value=0.015  Score=45.39  Aligned_cols=59  Identities=19%  Similarity=0.373  Sum_probs=40.7

Q ss_pred             cccccccCcccccC----------CCCCcCCccccCCh--HHHHHHHHHHHHHHHHHHHHHHHHccc--ccCC
Q psy12448         72 KQTCIGCKVVLHDT----------SLSNALCNFCLAKE--KQYYEAENDKYQQLEKKFCQLWTQCQT--CQGS  130 (168)
Q Consensus        72 s~~C~~C~~~~~~~----------~~~~~lC~~C~~~~--~~~~~~l~~~~~~~e~~~~~~~~~C~~--C~~~  130 (168)
                      ..+|+.|++.....          ...+..|++|....  ..+..+|...+|...++|++.|.+|..  |...
T Consensus        18 ~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~~~~~l~Nql~l~iR~~i~~YY~gwl~Cdd~~C~~~   90 (188)
T PF08996_consen   18 KLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPLSPASLVNQLELQIREHISRYYEGWLVCDDPTCGNR   90 (188)
T ss_dssp             EEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B--HHHHHHHHHHHHHHHHHHHHH--CCCCTCCCHHC
T ss_pred             EeECCCCCCCccccccccCCccccccCcCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHhCceeCcccccCc
Confidence            67999999887642          12478899998753  367778889999999999999999996  9863

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=89.96  E-value=0.18  Score=25.99  Aligned_cols=22  Identities=23%  Similarity=0.611  Sum_probs=17.9

Q ss_pred             cccccCcccccCCCCCcCCccccCC
Q psy12448         74 TCIGCKVVLHDTSLSNALCNFCLAK   98 (168)
Q Consensus        74 ~C~~C~~~~~~~~~~~~lC~~C~~~   98 (168)
                      .|..||.++..   +...|++|..+
T Consensus         1 ~Cp~CG~~~~~---~~~fC~~CG~~   22 (23)
T PF13240_consen    1 YCPNCGAEIED---DAKFCPNCGTP   22 (23)
T ss_pred             CCcccCCCCCC---cCcchhhhCCc
Confidence            38899999987   57899999764

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=88.45  E-value=0.28  Score=25.84  Aligned_cols=24  Identities=25%  Similarity=0.562  Sum_probs=19.1

Q ss_pred             cccccccCcccccCCCCCcCCccccCC
Q psy12448         72 KQTCIGCKVVLHDTSLSNALCNFCLAK   98 (168)
Q Consensus        72 s~~C~~C~~~~~~~~~~~~lC~~C~~~   98 (168)
                      ...|+.||..+..   +...|++|...
T Consensus         2 ~~~Cp~Cg~~~~~---~~~fC~~CG~~   25 (26)
T PF13248_consen    2 EMFCPNCGAEIDP---DAKFCPNCGAK   25 (26)
T ss_pred             cCCCcccCCcCCc---ccccChhhCCC
Confidence            3589999998776   57899999764

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=85.74  E-value=0.49  Score=25.11  Aligned_cols=24  Identities=25%  Similarity=0.551  Sum_probs=19.2

Q ss_pred             ccccccCcccccCCCCCcCCccccCCh
Q psy12448         73 QTCIGCKVVLHDTSLSNALCNFCLAKE   99 (168)
Q Consensus        73 ~~C~~C~~~~~~~~~~~~lC~~C~~~~   99 (168)
                      .+|+.|++.+..   +...|+.|..+.
T Consensus         1 K~CP~C~~~V~~---~~~~Cp~CG~~F   24 (26)
T PF10571_consen    1 KTCPECGAEVPE---SAKFCPHCGYDF   24 (26)
T ss_pred             CcCCCCcCCchh---hcCcCCCCCCCC
Confidence            379999999886   568899998654

Several members are annotated as putative helicases.

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=85.11  E-value=1.6  Score=27.77  Aligned_cols=24  Identities=17%  Similarity=0.548  Sum_probs=19.5

Q ss_pred             cccccccCcccccCCCCCcCCc-cccCC
Q psy12448         72 KQTCIGCKVVLHDTSLSNALCN-FCLAK   98 (168)
Q Consensus        72 s~~C~~C~~~~~~~~~~~~lC~-~C~~~   98 (168)
                      -.+|++||++++.   +...|+ .|+.+
T Consensus         3 HkHC~~CG~~Ip~---~~~fCS~~C~~~   27 (59)
T PF09889_consen    3 HKHCPVCGKPIPP---DESFCSPKCREE   27 (59)
T ss_pred             CCcCCcCCCcCCc---chhhhCHHHHHH
Confidence            4699999999987   578995 68754

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	168
3iay_A	919	Ternary Complex Of Dna Polymerase Delta Length = 91		1e-10

>pdb|3IAY|A Chain A, Ternary Complex Of Dna Polymerase Delta Length = 919

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 33/40 (82%)
Query: 2   KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDK 41
           +AEDP++VLENN+ +DS YYL NQL  P+I I +PI+GDK
Sbjct: 872 RAEDPLFVLENNIQVDSRYYLTNQLQNPIISIVAPIIGDK 911

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
3iay_A	919	DNA polymerase delta catalytic subunit; protein-DN	7e-16
1qht_A	775	Protein (DNA polymerase); archaea, hyperthermostab	4e-13
2gv9_A	1193	DNA polymerase; polymerase alpha fold, transferase	7e-09
3k59_A	786	POL II, DNA polymerase II; protein-DNA complex, DN	2e-06
1s5j_A	847	DNA polymerase I; replication, disulfide bonds, tr	6e-05

>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae} Length = 919

 Score = 73.0 bits (179), Expect = 7e-16
 Identities = 25/47 (53%), Positives = 35/47 (74%)

Query: 1   MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILL 47
            +AEDP++VLENN+ +DS YYL NQL  P+I I +PI+GDK  + + 
Sbjct: 871 NRAEDPLFVLENNIQVDSRYYLTNQLQNPIISIVAPIIGDKQANGMF 917

>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A Length = 775

 Score = 65.2 bits (159), Expect = 4e-13
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 11/73 (15%)

Query: 2   KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
           +A             D+ YY+ENQ+   + RI     G + E   LR   T+        
Sbjct: 713 RAIPADEFDPTKHRYDAEYYIENQVLPAVERILKAF-GYRKED--LRYQKTKQV------ 763

Query: 62  VGALSMFVQKKQT 74
              L  +++ K  
Sbjct: 764 --GLGAWLKVKGK 774

>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B* Length = 1193

 Score = 52.9 bits (126), Expect = 7e-09
 Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 1    MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD---KAESILLR 48
              AEDP Y + + V ++++YY  + L       F  + G+     ES+L R
Sbjct: 1099 ELAEDPAYAIAHGVALNTDYYFSHLLGAAC-VTFKALFGNNAKITESLLKR 1148

>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A* Length = 786

 Score = 45.9 bits (109), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 17/44 (38%), Gaps = 1/44 (2%)

Query: 3   AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESIL 46
              P  +     P+D  +YL  QL      I  P + D   +++
Sbjct: 737 TNGPEPLDYQRSPLDYEHYLTRQLQPVAEGIL-PFIEDNFATLM 779

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1 Length = 847

 Score = 41.4 bits (97), Expect = 6e-05
 Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)

Query: 8   YVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESI 45
             L     ID+  YLE  L     +I     G   + I
Sbjct: 794 VQLAKVTEIDAEKYLE-ALRSTFEQILRAF-GVSWDEI 829

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
1qht_A	775	Protein (DNA polymerase); archaea, hyperthermostab	98.64
2gv9_A	1193	DNA polymerase; polymerase alpha fold, transferase	98.28
3flo_B	206	DNA polymerase alpha catalytic subunit A; protein-	96.38
1s5j_A	847	DNA polymerase I; replication, disulfide bonds, tr	81.5

>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A

Probab=98.64  E-value=2.1e-09  Score=98.43  Aligned_cols=59  Identities=20%  Similarity=0.237  Sum_probs=28.6

Q ss_pred             CCCCChHHHhhcCCCCChhHHhhcccchHHHHHhcccccchhHHHhhhcCCcceeeeecCcccccccccc
Q psy12448          1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQ   70 (168)
Q Consensus         1 ~~a~~P~~~l~~~l~lD~~YYI~kqiipPL~Rif~~i~~d~~~~w~~~~~~~r~~~~~~~~~~~i~~f~~   70 (168)
                      +||++|+++.+++++||++|||+|||+|||+|||+++|.++ .++..          ..+++.+|..||.
T Consensus       712 ~ra~~~~~~~~~~~~iD~~yYi~~qi~ppl~ri~~~~g~~~-~~l~~----------~~~~q~~L~~ff~  770 (775)
T 1qht_A          712 DRAIPADEFDPTKHRYDAEYYIENQVLPAVERILKAFGYRK-EDLRY----------QKTKQVGLGAWLK  770 (775)
T ss_dssp             CSEEETTCC---------CHHHHTTHHHHSHHHHHTTTC-------------------------------
T ss_pred             hcccCHHHhccCCCCCCHHHHHHhcCHHHHHHHHHHhCCCH-HHhhh----------cCCccccHHHHhh
Confidence            58999999988889999999999999999999999999873 54331          1123457888885

>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*

Probab=98.28  E-value=2.4e-07  Score=88.13  Aligned_cols=39  Identities=28%  Similarity=0.635  Sum_probs=36.9

Q ss_pred             CCCCChHHHhhcCCCCChhHHhhcccchHHHHHhcccccc
Q psy12448          1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGD   40 (168)
Q Consensus         1 ~~a~~P~~~l~~~l~lD~~YYI~kqiipPL~Rif~~i~~d   40 (168)
                      ++||||.+|++|+++||++|||++ +++||.|+|++|.++
T Consensus      1099 ~~aedp~yv~~~~~~i~~~yY~~~-~~~~~~~~~~~~~~~ 1137 (1193)
T 2gv9_A         1099 ELAEDPAYAIAHGVALNTDYYFSH-LLGAACVTFKALFGN 1137 (1193)
T ss_dssp             CCEECHHHHHHTTCCBCHHHHHHH-HHHHHHHHSGGGGTT
T ss_pred             hhccCcHHHhhcCCcccHHHHHHH-hhhHHHHHHHHhcCc
Confidence            589999999999999999999999 889999999999984

>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}

Probab=96.38  E-value=0.0029  Score=49.13  Aligned_cols=72  Identities=18%  Similarity=0.311  Sum_probs=54.0

Q ss_pred             ccccccccCcccccC----------CCCCcCCccccCC--hHHHHHHHHHHHHHHHHHHHHHHHHcc--cccCC----CC
Q psy12448         71 KKQTCIGCKVVLHDT----------SLSNALCNFCLAK--EKQYYEAENDKYQQLEKKFCQLWTQCQ--TCQGS----LH  132 (168)
Q Consensus        71 ~s~~C~~C~~~~~~~----------~~~~~lC~~C~~~--~~~~~~~l~~~~~~~e~~~~~~~~~C~--~C~~~----~~  132 (168)
                      ...+|+.|++.....          ..++..|++|...  +..+..+|...+|...++|++.|.+|.  +|...    ..
T Consensus        21 l~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~~~~~i~nQl~l~iR~~i~~YY~gwlvCdD~~C~~rTR~lsv  100 (206)
T 3flo_B           21 LELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSV  100 (206)
T ss_dssp             EEEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCHHHHHHHHHHHHHHHHHHHHHCCEEESCTTTCCEESCCCS
T ss_pred             eEEECCCCCCccCCCCcccCCCcccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHhcCCcccCCcCCCcccceeec
Confidence            367999998654432          1246789999875  446778888999999999999999998  59872    12


Q ss_pred             CcccCcCCCC
Q psy12448        133 EQVICTSRDC  142 (168)
Q Consensus       133 ~~~~C~s~dC  142 (168)
                      ....|....|
T Consensus       101 ~g~rC~~p~C  110 (206)
T 3flo_B          101 FGKRCLNDGC  110 (206)
T ss_dssp             STTBCSSTTC
T ss_pred             cCCCCCCCCC
Confidence            3457888788

>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1

Probab=81.50  E-value=0.15  Score=46.96  Aligned_cols=26  Identities=27%  Similarity=0.359  Sum_probs=22.7

Q ss_pred             CCCChhHHhhcccchHHHHHhcccccc
Q psy12448         14 VPIDSNYYLENQLSKPLIRIFSPILGD   40 (168)
Q Consensus        14 l~lD~~YYI~kqiipPL~Rif~~i~~d   40 (168)
                      .+||++|||++ |.||++||++++|.+
T Consensus       800 ~~iD~~~Yl~~-l~~~~~~il~~~g~~  825 (847)
T 1s5j_A          800 TEIDAEKYLEA-LRSTFEQILRAFGVS  825 (847)
T ss_dssp             --CCSSTTHHH-HHTTSTTHHHHHSCC
T ss_pred             cCCCHHHHHHh-hhhHHHHHHHHhCCC
Confidence            58999999998 999999999999877

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1tgoa2	426	e.8.1.1 (A:348-773) Family B DNA polymerase {Archa	1e-08
d1q8ia2	394	e.8.1.1 (A:390-783) Family B DNA polymerase {Esche	2e-06
d1s5ja2	415	e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfo	0.002

>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]} Length = 426

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

 Score = 51.0 bits (121), Expect = 1e-08
 Identities = 17/71 (23%), Positives = 26/71 (36%), Gaps = 11/71 (15%)

Query: 2   KAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSR 61
           +A             D+ YY+ENQ+   + RI     G + E   LR   TR        
Sbjct: 366 RAIPFDEFDPAKHKYDAEYYIENQVLPAVERILRAF-GYRKED--LRYQKTRQV------ 416

Query: 62  VGALSMFVQKK 72
              L  +++ K
Sbjct: 417 --GLGAWLKPK 425

>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli [TaxId: 562]} Length = 394

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Escherichia coli [TaxId: 562]

 Score = 44.2 bits (103), Expect = 2e-06
 Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 3   AEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESIL 46
              P  +     P+D  +YL  QL      I   I  D   +++
Sbjct: 345 TNGPEPLDYQRSPLDYEHYLTRQLQPVAEGILPFI-EDNFATLM 387

>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus solfataricus [TaxId: 2287]} Length = 415

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 35.7 bits (81), Expect = 0.002
 Identities = 10/40 (25%), Positives = 13/40 (32%), Gaps = 2/40 (5%)

Query: 6   PIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESI 45
               L     ID+  YLE  L     +I     G   + I
Sbjct: 378 KPVQLAKVTEIDAEKYLE-ALRSTFEQILRAF-GVSWDEI 415

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1tgoa2	426	Family B DNA polymerase {Archaeon Thermococcus gor	98.32

>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon Thermococcus gorgonarius [TaxId: 71997]}

class: Multi-domain proteins (alpha and beta)
fold: DNA/RNA polymerases
superfamily: DNA/RNA polymerases
family: DNA polymerase I
domain: Family B DNA polymerase
species: Archaeon Thermococcus gorgonarius [TaxId: 71997]

Probab=98.32  E-value=4.7e-08  Score=81.60  Aligned_cols=59  Identities=25%  Similarity=0.247  Sum_probs=45.6

Q ss_pred             CCCCChHHHhhcCCCCChhHHhhcccchHHHHHhcccccchhHHHhhhcCCcceeeeecCcccccccccc
Q psy12448          1 MKAEDPIYVLENNVPIDSNYYLENQLSKPLIRIFSPILGDKAESILLRGDHTRTKIVSTSRVGALSMFVQ   70 (168)
Q Consensus         1 ~~a~~P~~~l~~~l~lD~~YYI~kqiipPL~Rif~~i~~d~~~~w~~~~~~~r~~~~~~~~~~~i~~f~~   70 (168)
                      ++|++|+++..++++||++|||++||++||.|||+++|.+. +. + ...        ..++.+|+.|+.
T Consensus       365 d~~~~~~~~~~~~~~iD~~yYiekqi~~pl~~il~~~g~~~-e~-l-~~~--------~~kq~~L~~f~~  423 (426)
T d1tgoa2         365 DRAIPFDEFDPAKHKYDAEYYIENQVLPAVERILRAFGYRK-ED-L-RYQ--------KTRQVGLGAWLK  423 (426)
T ss_dssp             CCEEEGGGCCTTTCCBCHHHHHHHTTGGGTHHHHHTTTCCG-GG-S-SCS--------SSCCCCCTTSSC
T ss_pred             ceeecHHHhCccCCCCCHHHHHHHHHHHHHHHHHhhcCCCH-HH-h-ccC--------CCCcccHHHhcC
Confidence            57888888877889999999999999999999999998762 31 1 111        234568888885