Psyllid ID: psy1244

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70---
Protein Sequence
MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY
Secondary Structure (PSIPRED)
cHHHHHHHHHHcccccHHcccccccccccccccccccccccccHHEEEEEEccccEEEEEEcccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHccccHHHHccccccccccHHHccHHHHccccHHEEEEccccccEEEEEEcccHHHHHHHHcc
Coil and Loop (DISEMBL)
MREAVENQIKnfgqtpsqllmephpprssamhmpsslfGSASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY
Flexible Loop (DISEMBL)
MREAVENQiknfgqtpsqlLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY
Low Complexity Region (SEG)
MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPsslfgsasalfllaglaTGTVVVFHIDFNRWHHEFQQRY
Disordered region (IsUnstruct)
*************************************FGSASALFLLAGLATGTVVVFHIDFNRWHHEF****
Disordered Region (DISOPRED)
***AVENQIKNFGQTPSQLLMEPHPP**********LFGSASALFLLAGLATGTVVVFHIDFNRWH*******
Disordered Region (DISEMBL)
********IKNFGQTPSQLLMEPH********MPSSLFGSASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY
Disordered Region (DISPRO)
MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiihhhhhhhhhhhhhhhhooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	73	2.2.26 [Sep-21-2011]
Q9W4E2	3578	Neurobeachin OS=Drosophil	yes	N/A	0.547	0.011	0.8	7e-13
Q8NFP9	2946	Neurobeachin OS=Homo sapi	yes	N/A	0.452	0.011	0.818	3e-10
Q9EPN1	2936	Neurobeachin OS=Mus muscu	yes	N/A	0.452	0.011	0.818	3e-10
P50851	2863	Lipopolysaccharide-respon	no	N/A	0.917	0.023	0.388	4e-09
Q9ESE1	2856	Lipopolysaccharide-respon	no	N/A	0.520	0.013	0.684	8e-09
Q19317	2507	Putative neurobeachin hom	yes	N/A	0.452	0.013	0.575	4e-06
A8XSV3	2531	Putative neurobeachin hom	N/A	N/A	0.452	0.013	0.575	5e-06
Q6ZS30	2694	Neurobeachin-like protein	no	N/A	0.602	0.016	0.531	5e-06
E7FAW3	2801	Neurobeachin-like protein	no	N/A	0.589	0.015	0.490	2e-05
Q6ZQA0	2742	Neurobeachin-like protein	no	N/A	0.397	0.010	0.724	3e-05

>sp|Q9W4E2|NBEA_DROME Neurobeachin OS=Drosophila melanogaster GN=rg PE=1 SV=3

 Score = 72.4 bits (176), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREAVENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F +
Sbjct: 3168 MREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSA 3207

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Required for correct retinal pattern formation and may function in cell fate determination through its interactions with the EGFR and Notch signaling pathways.
Drosophila melanogaster (taxid: 7227)

>sp|Q8NFP9|NBEA_HUMAN Neurobeachin OS=Homo sapiens GN=NBEA PE=1 SV=3

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
            +REA+E QI+NFGQTPSQLL+EPHPPRSSAMH+
Sbjct: 2537 LREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHL 2569

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins.

Homo sapiens (taxid: 9606)

>sp|Q9EPN1|NBEA_MOUSE Neurobeachin OS=Mus musculus GN=Nbea PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
            +REA+E QI+NFGQTPSQLL+EPHPPRSSAMH+
Sbjct: 2527 LREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHL 2559

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. May have a role in membrane trafficking.

Mus musculus (taxid: 10090)

>sp|P50851|LRBA_HUMAN Lipopolysaccharide-responsive and beige-like anchor protein OS=Homo sapiens GN=LRBA PE=1 SV=4

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 35/90 (38%), Positives = 48/90 (53%), Gaps = 23/90 (25%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSAS---ALFLLA--------- 48
            +REAVE QI++FGQTPSQLL+EPHPPR SAM +   +F   +    + +L          
Sbjct: 2463 LREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQVSPLMFTDKAQQDVIMVLKFPSNSPVTH 2522

Query: 49   -------GLATGTVVVFHID----FNRWHH 67
                   GLAT  V+    +     N+WH+
Sbjct: 2523 VAANTQPGLATPAVITVTANRLFAVNKWHN 2552

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Homo sapiens (taxid: 9606)

>sp|Q9ESE1|LRBA_MOUSE Lipopolysaccharide-responsive and beige-like anchor protein OS=Mus musculus GN=Lrba PE=1 SV=1

 Score = 58.9 bits (141), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 26/38 (68%), Positives = 31/38 (81%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLF 38
            +REAVE QI++FGQTPSQLL+EPHPPR SAM     +F
Sbjct: 2456 LREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQASPLMF 2493

May be involved in coupling signal transduction and vesicle trafficking to enable polarized secretion and/or membrane deposition of immune effector molecules.

Mus musculus (taxid: 10090)

>sp|Q19317|NBEA_CAEEL Putative neurobeachin homolog OS=Caenorhabditis elegans GN=sel-2 PE=2 SV=3

 Score = 50.1 bits (118), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 41   ASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY 73
            AS  F+L GL +G +VVF+ DFNRWH+E++ RY
Sbjct: 2459 ASHRFILGGLDSGAIVVFNADFNRWHYEYKHRY 2491

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins (By similarity). Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis elegans (taxid: 6239)

>sp|A8XSV3|NBEA_CAEBR Putative neurobeachin homolog OS=Caenorhabditis briggsae GN=sel-2 PE=3 SV=1

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 26/33 (78%)

Query: 41   ASALFLLAGLATGTVVVFHIDFNRWHHEFQQRY 73
            AS  F+L GL +G +VVF+ DFNRWH+E++ RY
Sbjct: 2483 ASHRFILGGLDSGAIVVFNADFNRWHYEYKHRY 2515

Binds to type II regulatory subunits of protein kinase A and anchors/targets them to the membrane. May anchor the kinase to cytoskeletal and/or organelle-associated proteins. Regulates endosomal traffic in polarized epithelial cells such as the vulval precursor cells and intestinal cells. Thought to act as a negative regulator of lin-12 activity in vulval precursor cells. May have a role in the internalization process from basolateral surface of polarized epithelial cells.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q6ZS30|NBEL1_HUMAN Neurobeachin-like protein 1 OS=Homo sapiens GN=NBEAL1 PE=2 SV=3

 Score = 49.7 bits (117), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 25/47 (53%), Positives = 30/47 (63%), Gaps = 3/47 (6%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSS---AMHMPSSLFGSASALF 45
            R+A+E  I NFGQTP QLL EPHPPR S   A+  P+ +  S   LF
Sbjct: 2259 RKALEGMINNFGQTPCQLLKEPHPPRLSAEEAVQKPTKIDTSTLNLF 2305

Homo sapiens (taxid: 9606)

>sp|E7FAW3|NBEL2_DANRE Neurobeachin-like protein 2 OS=Danio rerio GN=nbeal2 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 10/53 (18%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSSAMH----------MPSSLFGSASAL 44
            R+A+E  I NFGQTP QLL EPHPPR SA +          +P +LF   S L
Sbjct: 2366 RKALEGIISNFGQTPCQLLKEPHPPRMSAENAFRRAARLDILPPNLFDQLSKL 2418

Involved in thrombopoiesis. Plays a role in the development or secretion of alpha-granules, that contain several growth factors important for platelet biogenesis.

Danio rerio (taxid: 7955)

>sp|Q6ZQA0|NBEL2_MOUSE Neurobeachin-like protein 2 OS=Mus musculus GN=Nbeal2 PE=2 SV=2

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 21/29 (72%), Positives = 23/29 (79%)

Query: 2    REAVENQIKNFGQTPSQLLMEPHPPRSSA 30
            R+A+E  I NFGQTP QLL EPHPPR SA
Sbjct: 2308 RKALEGIISNFGQTPCQLLKEPHPPRLSA 2336

Probably involved in thrombopoiesis. Plays a role in the development or secretion of alpha-granules, that contain several growth factors important for platelet biogenesis.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
350417191	3204	PREDICTED: neurobeachin-like [Bombus imp	0.547	0.012	0.8	2e-11
340715018	3204	PREDICTED: neurobeachin-like [Bombus ter	0.547	0.012	0.8	2e-11
270005524	757	hypothetical protein TcasGA2_TC007593 [T	0.547	0.052	0.825	2e-11
380020287	2983	PREDICTED: neurobeachin-like [Apis flore	0.890	0.021	0.538	2e-11
383855622	3257	PREDICTED: neurobeachin-like [Megachile	0.547	0.012	0.8	2e-11
195396793	3654	GJ16846 [Drosophila virilis] gi|19414678	0.547	0.010	0.8	3e-11
195425835	3583	GK10290 [Drosophila willistoni] gi|19415	0.547	0.011	0.8	3e-11
195129838	3747	GI15273 [Drosophila mojavensis] gi|19390	0.547	0.010	0.8	3e-11
195476931	3643	GE16387 [Drosophila yakuba] gi|194187559	0.547	0.010	0.8	3e-11
161077567	3712	rugose, isoform C [Drosophila melanogast	0.547	0.010	0.8	3e-11

>gi|350417191|ref|XP_003491301.1| PREDICTED: neurobeachin-like [Bombus impatiens]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREA+ENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F S
Sbjct: 2796 MREAIENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSS 2835

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340715018|ref|XP_003396018.1| PREDICTED: neurobeachin-like [Bombus terrestris]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREA+ENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F S
Sbjct: 2796 MREAIENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSS 2835

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270005524|gb|EFA01972.1| hypothetical protein TcasGA2_TC007593 [Tribolium castaneum]

 Score = 73.6 bits (179), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/40 (82%), Positives = 36/40 (90%)

Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
           MREAVENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F S
Sbjct: 348 MREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSS 387

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380020287|ref|XP_003694021.1| PREDICTED: neurobeachin-like [Apis florea]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 42/65 (64%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGSASALFLLAGLATGTVVVFHI 60
            MREA+ENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F S      +         + HI
Sbjct: 2575 MREAIENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSSIPDDICMTIKFPSNSPICHI 2634

Query: 61   DFNRW 65
              N +
Sbjct: 2635 SANTY 2639

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383855622|ref|XP_003703309.1| PREDICTED: neurobeachin-like [Megachile rotundata]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREA+ENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F S
Sbjct: 2851 MREAIENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSS 2890

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195396793|ref|XP_002057013.1| GJ16846 [Drosophila virilis] gi|194146780|gb|EDW62499.1| GJ16846 [Drosophila virilis]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREAVENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F +
Sbjct: 3244 MREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSA 3283

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195425835|ref|XP_002061170.1| GK10290 [Drosophila willistoni] gi|194157255|gb|EDW72156.1| GK10290 [Drosophila willistoni]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREAVENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F +
Sbjct: 3173 MREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSA 3212

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195129838|ref|XP_002009361.1| GI15273 [Drosophila mojavensis] gi|193907811|gb|EDW06678.1| GI15273 [Drosophila mojavensis]

 Score = 72.8 bits (177), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREAVENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F +
Sbjct: 3337 MREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSA 3376

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195476931|ref|XP_002100035.1| GE16387 [Drosophila yakuba] gi|194187559|gb|EDX01143.1| GE16387 [Drosophila yakuba]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREAVENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F +
Sbjct: 3233 MREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSA 3272

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|161077567|ref|NP_001036261.2| rugose, isoform C [Drosophila melanogaster] gi|158031718|gb|ABI30968.2| rugose, isoform C [Drosophila melanogaster]

 Score = 72.4 bits (176), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/40 (80%), Positives = 36/40 (90%)

Query: 1    MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHMPSSLFGS 40
            MREAVENQI+NFGQTPSQLLMEPHPPRSSAMH+   +F +
Sbjct: 3302 MREAVENQIRNFGQTPSQLLMEPHPPRSSAMHLSPMMFSA 3341

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	73
FB|FBgn0086911	3578	rg "rugose" [Drosophila melano	0.452	0.009	0.939	7e-20
UNIPROTKB|B7Z2H9	739	NBEA "Uncharacterized protein"	0.452	0.044	0.818	1.9e-16
UNIPROTKB|F1MF64	2809	NBEA "Uncharacterized protein"	0.452	0.011	0.818	4.2e-15
UNIPROTKB|F1P3D0	2855	NBEA "Neurobeachin" [Gallus ga	0.452	0.011	0.818	4.4e-15
MGI|MGI:1347075	2936	Nbea "neurobeachin" [Mus muscu	0.452	0.011	0.818	4.6e-15
UNIPROTKB|Q8NFP9	2946	NBEA "Neurobeachin" [Homo sapi	0.452	0.011	0.818	4.7e-15
UNIPROTKB|E1C6E6	2850	LRBA "Uncharacterized protein"	0.452	0.011	0.787	9e-15
UNIPROTKB|P50851	2863	LRBA "Lipopolysaccharide-respo	0.452	0.011	0.757	4.9e-14
RGD|1311428	2709	Lrba "LPS-responsive vesicle t	0.424	0.011	0.806	5.5e-14
MGI|MGI:1933162	2856	Lrba "LPS-responsive beige-lik	0.424	0.010	0.806	6.1e-14

FB|FBgn0086911 rg "rugose" [Drosophila melanogaster (taxid:7227)]

 Score = 168 (64.2 bits), Expect = 7.0e-20, Sum P(2) = 7.0e-20
 Identities = 31/33 (93%), Positives = 33/33 (100%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
             MREAVENQI+NFGQTPSQLLMEPHPPRSSAMH+
Sbjct:  3168 MREAVENQIRNFGQTPSQLLMEPHPPRSSAMHL 3200

GO:0016021 "integral to membrane" evidence=IDA

GO:0008104 "protein localization" evidence=NAS;IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0051018 "protein kinase A binding" evidence=NAS;IDA

GO:0042675 "compound eye cone cell differentiation" evidence=IMP

GO:0007528 "neuromuscular junction development" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0016319 "mushroom body development" evidence=IMP

UNIPROTKB|B7Z2H9 NBEA "Uncharacterized protein" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 1.9e-16, Sum P(2) = 1.9e-16
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
             +REA+E QI+NFGQTPSQLL+EPHPPRSSAMH+
Sbjct:   330 LREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHL 362

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

UNIPROTKB|F1MF64 NBEA "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 149 (57.5 bits), Expect = 4.2e-15, Sum P(2) = 4.2e-15
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
             +REA+E QI+NFGQTPSQLL+EPHPPRSSAMH+
Sbjct:  2400 LREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHL 2432

GO:0019901 "protein kinase binding" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IEA

UNIPROTKB|F1P3D0 NBEA "Neurobeachin" [Gallus gallus (taxid:9031)]

 Score = 149 (57.5 bits), Expect = 4.4e-15, Sum P(2) = 4.4e-15
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
             +REA+E QI+NFGQTPSQLL+EPHPPRSSAMH+
Sbjct:  2442 LREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHL 2474

GO:0005802 "trans-Golgi network" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008104 "protein localization" evidence=IEA

GO:0012505 "endomembrane system" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

MGI|MGI:1347075 Nbea "neurobeachin" [Mus musculus (taxid:10090)]

 Score = 149 (57.5 bits), Expect = 4.6e-15, Sum P(2) = 4.6e-15
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
             +REA+E QI+NFGQTPSQLL+EPHPPRSSAMH+
Sbjct:  2527 LREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHL 2559

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006605 "protein targeting" evidence=ISS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=NAS

GO:0008104 "protein localization" evidence=IDA

GO:0012505 "endomembrane system" evidence=IDA

GO:0016020 "membrane" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IDA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0045211 "postsynaptic membrane" evidence=NAS

GO:0051018 "protein kinase A binding" evidence=NAS

UNIPROTKB|Q8NFP9 NBEA "Neurobeachin" [Homo sapiens (taxid:9606)]

 Score = 149 (57.5 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
 Identities = 27/33 (81%), Positives = 32/33 (96%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
             +REA+E QI+NFGQTPSQLL+EPHPPRSSAMH+
Sbjct:  2537 LREAMEAQIQNFGQTPSQLLIEPHPPRSSAMHL 2569

GO:0008104 "protein localization" evidence=IEA

GO:0019901 "protein kinase binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0012505 "endomembrane system" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0005802 "trans-Golgi network" evidence=ISS

UNIPROTKB|E1C6E6 LRBA "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 139 (54.0 bits), Expect = 9.0e-15, Sum P(2) = 9.0e-15
 Identities = 26/33 (78%), Positives = 31/33 (93%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
             +REAVE QI++FGQTPSQLL+EPHPPRSSAM +
Sbjct:  2443 LREAVEAQIRSFGQTPSQLLIEPHPPRSSAMQV 2475

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

UNIPROTKB|P50851 LRBA "Lipopolysaccharide-responsive and beige-like anchor protein" [Homo sapiens (taxid:9606)]

 Score = 135 (52.6 bits), Expect = 4.9e-14, Sum P(2) = 4.9e-14
 Identities = 25/33 (75%), Positives = 30/33 (90%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAMHM 33
             +REAVE QI++FGQTPSQLL+EPHPPR SAM +
Sbjct:  2463 LREAVEAQIRSFGQTPSQLLIEPHPPRGSAMQV 2495

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

RGD|1311428 Lrba "LPS-responsive vesicle trafficking, beach and anchor containing" [Rattus norvegicus (taxid:10116)]

 Score = 134 (52.2 bits), Expect = 5.5e-14, Sum P(2) = 5.5e-14
 Identities = 25/31 (80%), Positives = 29/31 (93%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAM 31
             +REAVE QI++FGQTPSQLL+EPHPPR SAM
Sbjct:  2309 LREAVEAQIRSFGQTPSQLLIEPHPPRGSAM 2339

GO:0005764 "lysosome" evidence=ISO

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005802 "trans-Golgi network" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=ISO

MGI|MGI:1933162 Lrba "LPS-responsive beige-like anchor" [Mus musculus (taxid:10090)]

 Score = 134 (52.2 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
 Identities = 25/31 (80%), Positives = 29/31 (93%)

Query:     1 MREAVENQIKNFGQTPSQLLMEPHPPRSSAM 31
             +REAVE QI++FGQTPSQLL+EPHPPR SAM
Sbjct:  2456 LREAVEAQIRSFGQTPSQLLIEPHPPRGSAM 2486

GO:0005764 "lysosome" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0007165 "signal transduction" evidence=TAS

GO:0008104 "protein localization" evidence=ISA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IDA

GO:0016197 "endosomal transport" evidence=TAS

GO:0051018 "protein kinase A binding" evidence=ISA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q19317	NBEA_CAEEL	No assigned EC number	0.5757	0.4520	0.0131	yes	N/A
Q9W4E2	NBEA_DROME	No assigned EC number	0.8	0.5479	0.0111	yes	N/A
Q8NFP9	NBEA_HUMAN	No assigned EC number	0.8181	0.4520	0.0112	yes	N/A
Q9EPN1	NBEA_MOUSE	No assigned EC number	0.8181	0.4520	0.0112	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	73
smart01026	280	smart01026, Beach, Beige/BEACH domain	3e-10
cd06071	275	cd06071, Beach, BEACH (Beige and Chediak-Higashi)	1e-08
pfam02138	274	pfam02138, Beach, Beige/BEACH domain	3e-08

>gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 19/27 (70%), Positives = 21/27 (77%)

Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPR 27
            R+A+E QI NFGQTP QL  EPHPPR
Sbjct: 254 ERKALEGQIHNFGQTPKQLFKEPHPPR 280

The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Length = 280

>gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes

 Score = 48.8 bits (117), Expect = 1e-08
 Identities = 18/27 (66%), Positives = 20/27 (74%)

Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPR 27
            REA+E QI NFGQTP QL  +PHP R
Sbjct: 249 EREAIEAQINNFGQTPVQLFTKPHPKR 275

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Length = 275

>gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain

 Score = 48.0 bits (115), Expect = 3e-08
 Identities = 19/27 (70%), Positives = 20/27 (74%)

Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPR 27
            REA+E QI NFGQTP QL  EPHP R
Sbjct: 248 EREAIEAQISNFGQTPKQLFTEPHPKR 274

Length = 274

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	73
PF02138	270	Beach: Beige/BEACH domain; InterPro: IPR000409 The	98.72
cd06071	275	Beach BEACH (Beige and Chediak-Higashi) domains, i	98.7
KOG1787|consensus	1126		98.09
KOG1786|consensus	1081		92.87

>PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling

Probab=98.72  E-value=3.7e-09  Score=78.01  Aligned_cols=26  Identities=65%  Similarity=1.105  Sum_probs=12.2

Q ss_pred             hHHHHHHHHhcCCCccccCCCCCCCC
Q psy1244           2 REAVENQIKNFGQTPSQLLMEPHPPR   27 (73)
Q Consensus         2 r~a~~~qI~~FGQtP~Qlf~~pHp~R   27 (73)
                      +.++++++.+|||+|.|||++|||+|
T Consensus       245 ~~~~~~~~~~~Gq~P~QLF~~pHP~R  270 (270)
T PF02138_consen  245 REAIEAQLKNFGQVPIQLFTKPHPKR  270 (270)
T ss_dssp             HHHHHHHHHHC--------SS-----
T ss_pred             HHHHHHHHHhcCCChHHHhCCCCCCC
Confidence            67899999999999999999999998

The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C.

>cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes

Probab=98.70  E-value=7.8e-09  Score=76.68  Aligned_cols=26  Identities=69%  Similarity=1.132  Sum_probs=25.0

Q ss_pred             hHHHHHHHHhcCCCccccCCCCCCCC
Q psy1244           2 REAVENQIKNFGQTPSQLLMEPHPPR   27 (73)
Q Consensus         2 r~a~~~qI~~FGQtP~Qlf~~pHp~R   27 (73)
                      +.++++++.+|||+|.|||++|||+|
T Consensus       250 ~~~~~~~~~~~Gq~P~QLF~~pHP~R  275 (275)
T cd06071         250 REAIEAQINNFGQTPVQLFTKPHPKR  275 (275)
T ss_pred             HHHHHHHHHhcCCCcchhccCCCCCC
Confidence            67999999999999999999999998

This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins.

>KOG1787|consensus

Probab=98.09  E-value=2.6e-06  Score=73.03  Aligned_cols=66  Identities=44%  Similarity=0.543  Sum_probs=52.0

Q ss_pred             HHHHHHHHhcCCCccccCCCCCCCCCCCCCC---CCccchhhhHH-------H------------hHhhccCCCeEEEE-
Q psy1244           3 EAVENQIKNFGQTPSQLLMEPHPPRSSAMHM---PSSLFGSASAL-------F------------LLAGLATGTVVVFH-   59 (73)
Q Consensus         3 ~a~~~qI~~FGQtP~Qlf~~pHp~R~~~~~~---~~~~f~~~~~K-------f------------~~~~ls~gsVVtV~-   59 (73)
                      ++++.||.+|||||+|+|.++||+|.+...+   ++++|++....       +            .+..+..++++.+. 
T Consensus       726 eai~~~i~~f~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~s~s~~~v~aan~~~~~~~~~~~~~~~  805 (1126)
T KOG1787|consen  726 EAIEAQIASFGQTPSQLLQEQHPPRASESKLALPSALVFEDASQLDVGIVLKRPSNSSVVVVAANTLFELCQPTVLGVRS  805 (1126)
T ss_pred             HHHHHHHhhccccchhhhhhccCCcchhccccccccchhhhhhhhhhhhccccCCCCcceeecccccccccccceeeeee
Confidence            6999999999999999999999999999886   34688774331       1            24566667777664 


Q ss_pred             ---eeeccchhH
Q psy1244          60 ---IDFNRWHHE   68 (73)
Q Consensus        60 ---~avnkW~~~   68 (73)
                         +..|+|+..
T Consensus       806 ~~~~~~n~~~~~  817 (1126)
T KOG1787|consen  806 LLEFPRNISSPS  817 (1126)
T ss_pred             eEEeehhccccc
Confidence               899999874

>KOG1786|consensus

Probab=92.87  E-value=0.058  Score=46.64  Aligned_cols=30  Identities=20%  Similarity=0.163  Sum_probs=27.4

Q ss_pred             hHHHHHHHHhcCCCccccCCCCCCCCCCCC
Q psy1244           2 REAVENQIKNFGQTPSQLLMEPHPPRSSAM   31 (73)
Q Consensus         2 r~a~~~qI~~FGQtP~Qlf~~pHp~R~~~~   31 (73)
                      ..++++++++|||+|+|||.++|+.+...+
T Consensus       601 ~~~~~~~~~~~~~~~~~l~~~~h~~~~~~~  630 (1081)
T KOG1786|consen  601 QNILIVSNNHFKQTIKQLFPKKHSVSELTE  630 (1081)
T ss_pred             hhhhHHHhhccccchhhcccccccccccch
Confidence            357888999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	73
1t77_A	414	Crystal Structure Of The Ph-Beach Domains Of Human		7e-08
1mi1_A	414	Crystal Structure Of The Ph-Beach Domain Of Human N		1e-07

>pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414

Iteration: 1
 Score = 52.0 bits (123), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 22/27 (81%), Positives = 26/27 (96%)
Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPR 27
           +REAVE QI++FGQTPSQLL+EPHPPR
Sbjct: 388 LREAVEAQIRSFGQTPSQLLIEPHPPR 414

>pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 22/27 (81%), Positives = 25/27 (92%)
Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPR 27
           +REA E QI+NFGQTPSQLL+EPHPPR
Sbjct: 388 LREAXEAQIQNFGQTPSQLLIEPHPPR 414
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	73
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	1e-08

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A Length = 414

 Score = 48.2 bits (114), Expect = 1e-08
 Identities = 22/27 (81%), Positives = 26/27 (96%)

Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPR 27
           +REAVE QI++FGQTPSQLL+EPHPPR
Sbjct: 388 LREAVEAQIRSFGQTPSQLLIEPHPPR 414

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	73
1t77_A	414	Lipopolysaccharide-responsive and beige-like ancho	99.07

>1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A

Probab=99.07  E-value=4.2e-11  Score=91.94  Aligned_cols=27  Identities=81%  Similarity=1.349  Sum_probs=25.7

Q ss_pred             ChHHHHHHHHhcCCCccccCCCCCCCC
Q psy1244           1 MREAVENQIKNFGQTPSQLLMEPHPPR   27 (73)
Q Consensus         1 ~r~a~~~qI~~FGQtP~Qlf~~pHp~R   27 (73)
                      +|.|+++||+||||||.|||++|||+|
T Consensus       388 ~~~a~~~~i~~fGQ~P~QLF~~pHP~R  414 (414)
T 1t77_A          388 LREAVEAQIRSFGQTPSQLLIEPHPPR  414 (414)
T ss_dssp             HHHHHHHHHHHHCCCCCCCCSSCCCCC
T ss_pred             HHHHHHHHHHHcCCChhhhhcCCCCCC
Confidence            378999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	73
d1t77a1	304	a.169.1.1 (A:2186-2489) Lipopolysaccharide-respons	6e-10

>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 304

class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.8 bits (121), Expect = 6e-10
 Identities = 22/27 (81%), Positives = 26/27 (96%)

Query: 1   MREAVENQIKNFGQTPSQLLMEPHPPR 27
           +REAVE QI++FGQTPSQLL+EPHPPR
Sbjct: 278 LREAVEAQIRSFGQTPSQLLIEPHPPR 304

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	73
d1t77a1	304	Lipopolysaccharide-responsive and beige-like ancho	98.76

>d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: BEACH domain
superfamily: BEACH domain
family: BEACH domain
domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.2e-09  Score=78.96  Aligned_cols=26  Identities=85%  Similarity=1.365  Sum_probs=24.9

Q ss_pred             hHHHHHHHHhcCCCccccCCCCCCCC
Q psy1244           2 REAVENQIKNFGQTPSQLLMEPHPPR   27 (73)
Q Consensus         2 r~a~~~qI~~FGQtP~Qlf~~pHp~R   27 (73)
                      |.+++.++.+|||+|.|||++|||+|
T Consensus       279 ~~~~~~~~~~~Gq~P~QLF~~pHP~R  304 (304)
T d1t77a1         279 REAVEAQIRSFGQTPSQLLIEPHPPR  304 (304)
T ss_dssp             HHHHHHHHHHHCCCCCCCCSSCCCCC
T ss_pred             HHHHHHHHHHCCCCchhhcCCCCCCC
Confidence            67899999999999999999999998