Psyllid ID: psy12483

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230---
Protein Sequence
MSGVASHSPDSPSTGGPDQMCGELNLRLLYIGWRIEMGDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW
Secondary Structure (PSIPRED)
cccccccccccccccccccccccHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccEEEcccccccccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHccEEEEcccccHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHcccccccccccccEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccHHHHHHHHHHHHHccccHccEEEEEEcccHHHHHHHHcccc
Coil and Loop (DISEMBL)
msgvashspdspstggpdqmcgELNLRLLYIGWRiemgdqataaeVNEEDFQKLKERMKMisdadplqyhndfSLKRYLRAFKQVDPAFQAILKTNKWRVEYDvasltdqnpiikSHLEKNKARVLKHrdmngrpviyiparnhnandrdiDEITKFIVYCLEEACKKCFEEVVDNLCIVfdlkdfglscmDYQMIKNLIWLLSrhyperlgvclilnsptlfsgcwtvirgw
Flexible Loop (DISEMBL)
msgvashspdspstggpdqmCGELNLRLLYIGWRIEMGDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVAsltdqnpiikshleknkarvlkhrdmngrpviyiparnhnandrdiDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLIlnsptlfsgcwtvirgw
Low Complexity Region (SEG)
MSGVASHSPDSPSTGGPDQMCGELNLRLLYIGWRIEMGDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW
Disordered region (IsUnstruct)
********************CGELNLRLLYIGWRIEMGDQAT*********************ADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIR**
Disordered Region (DISOPRED)
******************************************************KERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNA**RDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW
Disordered Region (DISEMBL)
*****************DQMCGELNLRLLYIGWRIEMGDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW
Disordered Region (DISPRO)
*****************DQMCGELNLRLLYIGWRIEMGDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGVASHSPDSPSTGGPDQMCGELNLRLLYIGWRIEMGDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	233	2.2.26 [Sep-21-2011]
Q10138	444	CRAL-TRIO domain-containi	yes	N/A	0.673	0.353	0.335	3e-18
Q757H2	436	Phosphatidylinositol tran	yes	N/A	0.690	0.369	0.318	7e-15
Q9HDZ5	388	CRAL-TRIO domain-containi	no	N/A	0.622	0.373	0.282	4e-14
Q06705	408	Phosphatidylinositol tran	yes	N/A	0.527	0.301	0.352	7e-14
Q55CU8	364	Random slug protein 5 OS=	no	N/A	0.772	0.494	0.271	5e-12
P24280	304	SEC14 cytosolic factor OS	no	N/A	0.811	0.621	0.259	1e-08
Q10137	286	Sec14 cytosolic factor OS	no	N/A	0.690	0.562	0.266	2e-08
P45816	492	SEC14 cytosolic factor OS	no	N/A	0.785	0.371	0.268	5e-08
P33324	310	CRAL-TRIO domain-containi	no	N/A	0.824	0.619	0.227	6e-07
Q9CWP6	518	Motile sperm domain-conta	yes	N/A	0.618	0.277	0.221	1e-06

>sp|Q10138|YAS2_SCHPO CRAL-TRIO domain-containing protein C3H8.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC3H8.02 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/173 (33%), Positives = 88/173 (50%), Gaps = 16/173 (9%)

Query: 72  DFSLKRYLRAFK-QVDPAFQAILKTNKWRV-EYDVASLTDQNPIIKSHLEKNKARVLKHR 129
           D  L R+LRA K  V+ A +  +KT  WR  E +V  +         HL+K+   V + R
Sbjct: 124 DGLLLRFLRARKWNVEAALEMFMKTVHWRSREMNVGEIVCN----ADHLDKDDDFVRQLR 179

Query: 130 ---------DMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIV 180
                    D + RPV YI AR H   D   + + +  V+ +E A +   +  ++   +V
Sbjct: 180 IGKCFIFGEDKHNRPVCYIRARLHKVGDVSPESVERLTVWVMETA-RLILKPPIETATVV 238

Query: 181 FDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
           FD+ DF +S MDY  +K +I     HYPE LG C++  +P LF G W++I+ W
Sbjct: 239 FDMTDFSMSNMDYGPLKFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSW 291

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q757H2|CSR1_ASHGO Phosphatidylinositol transfer protein CSR1 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=CSR1 PE=3 SV=2

 Score = 80.9 bits (198), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 56/176 (31%), Positives = 90/176 (51%), Gaps = 15/176 (8%)

Query: 70  HNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEY----DV-------ASLTDQNPIIKSH 117
           + D  L R++RA K  ++ A   +  + +WR+      D+       A   D+  I+K  
Sbjct: 136 YPDNLLLRFVRARKWDINKAMIMMAHSLRWRLNEGKPEDIVFGGERGAQKADKKGIVK-Q 194

Query: 118 LEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNL 177
           LE  KA V +  D NG P++Y+  R H+A D+   E +++ +  +E+A +   +E  D  
Sbjct: 195 LELGKATV-RGFDKNGCPIVYVRPRLHHAADQTEAETSEYSLLIIEQA-RLFLKEPCDTA 252

Query: 178 CIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
            I+FDL  F ++ MDY  +K LI     HYPE LG   I  +P +F   W +I+ W
Sbjct: 253 TILFDLSGFSMANMDYAPVKFLITCFEAHYPECLGKLFIHKAPWIFPPIWNIIKNW 308

Non-classical phosphatidylinositol (PtdIns) transfer protein (PITP), which exhibits PtdIns-binding/transfer activity in the absence of detectable PtdCho-binding/transfer activity. May also regulate post-Golgi membrane-trafficking events and have a role resistance to oxidative stress.

Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) (taxid: 284811)

>sp|Q9HDZ5|YKP9_SCHPO CRAL-TRIO domain-containing protein C589.09, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC589.09 PE=4 SV=1

 Score = 78.2 bits (191), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 46/163 (28%), Positives = 80/163 (49%), Gaps = 18/163 (11%)

Query: 88  AFQAILKTNKWRVEYDVASLTDQNPIIK---------SHLEKNKARVLKHRDMNGRPVIY 138
           A Q ++ T +WRV+  V  + ++  +             L   K  +L  RD++ RP+ Y
Sbjct: 97  ASQKLINTLQWRVDTGVERIVERGELYAKETNDDQFLEQLRTGKVTMLG-RDLSDRPICY 155

Query: 139 IPARNHNANDRDIDEITKFIVYCLEEA-----CKKCFEEVVD---NLCIVFDLKDFGLSC 190
           I    H  +    + + +  V+ +E        +K  ++ +D   N+ ++FDL +F L  
Sbjct: 156 IQVHLHQPSKLTQNSLREMTVWVMETMRLFLRPQKTLKDSMDSPQNVNVLFDLSNFSLHN 215

Query: 191 MDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
           MDY  +K L   L  +YP+ LGVC++  SP +F   W +I+GW
Sbjct: 216 MDYSFVKYLASCLEYYYPQSLGVCILHKSPWIFRSVWNIIKGW 258

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q06705|CSR1_YEAST Phosphatidylinositol transfer protein CSR1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CSR1 PE=1 SV=1

 Score = 77.8 bits (190), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 44/125 (35%), Positives = 70/125 (56%), Gaps = 2/125 (1%)

Query: 109 DQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKK 168
           ++  +IK+ LE  KA +  + D + RPVI +  R H+++D+   E+ KF +  +E++   
Sbjct: 156 NETGVIKN-LELQKATIQGY-DNDMRPVILVRPRLHHSSDQTEQELEKFSLLVIEQSKLF 213

Query: 169 CFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWT 228
             E    +  I+FDL  F +S MDY  +K LI     HYPE LG  LI  +P +F+  W 
Sbjct: 214 FKENYPASTTILFDLNGFSMSNMDYAPVKFLITCFEAHYPESLGHLLIHKAPWIFNPIWN 273

Query: 229 VIRGW 233
           +I+ W
Sbjct: 274 IIKNW 278

Non-classical phosphatidylinositol (PtdIns) transfer protein (PITP), which exhibits PtdIns-binding/transfer activity in the absence of detectable PtdCho-binding/transfer activity. Activates SPO14/PLD1 (phospholipase D1) by stimulating phosphoinositide synthesis via the STT4 PtdIns 4-kinase. Modulates ArfGAP function through effects on SPO14 activity. Inhibits phosphatidylcholine degradation by PLB1 (phospholipase B1). May also regulate post-Golgi membrane-trafficking events and have a role resistance to oxidative stress.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q55CU8|RSC5_DICDI Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1

 Score = 71.2 bits (173), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/184 (27%), Positives = 83/184 (45%), Gaps = 4/184 (2%)

Query: 49  EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILK-TNKWRVEYDVASL 107
           E F+++K     ++D   + +  D    RYLRA   +    + +L+ T +WR ++    +
Sbjct: 50  EAFKEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRKKFRPQDI 109

Query: 108 TDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACK 167
                I    +       +  RD  GRP+I+   RN    +   +   K +VY LE+   
Sbjct: 110 QLGGDI--REIGSAGCVYVNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFS 167

Query: 168 KCFE-EVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGC 226
           +  E + ++  C + D KDFG   MD +     +  L  H PER+G  L L+ P LF   
Sbjct: 168 RMDEPKGIEQFCFIVDYKDFGSGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFA 227

Query: 227 WTVI 230
           W +I
Sbjct: 228 WKII 231

Dictyostelium discoideum (taxid: 44689)

>sp|P24280|SEC14_YEAST SEC14 cytosolic factor OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SEC14 PE=1 SV=3

 Score = 60.5 bits (145), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 96/212 (45%), Gaps = 23/212 (10%)

Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWR 99
            T   ++    + L E  K++ DA  ++  +D +L R+LRA K  V  A +      KWR
Sbjct: 24  GTPGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWR 83

Query: 100 VEYDVASLT-----DQNPIIKSHLEKNKARVLKHRDMNGRPVIY--IPARN-HNANDRDI 151
            +Y   ++      D+ P+I     K   +     D +GRPV +  + A N H  N    
Sbjct: 84  KDYGTDTILQDFHYDEKPLIA----KFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTS 139

Query: 152 DE-ITKFIVYCLEE-------ACKKCFEEVVDNLCIVFDLKDFGLSCMDYQM--IKNLIW 201
           +E + K +V+  E        AC +    +V+  C + DLK   +S     M  ++   +
Sbjct: 140 EERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASY 199

Query: 202 LLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
           +   +YPER+G   I+N+P  FS  + + + +
Sbjct: 200 ISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 231

Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro. Essential for viability and secretion.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q10137|SEC14_SCHPO Sec14 cytosolic factor OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=sec14 PE=4 SV=1

 Score = 59.7 bits (143), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/180 (26%), Positives = 87/180 (48%), Gaps = 19/180 (10%)

Query: 71  NDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLTDQ-NPIIKSHLEKNKARVLKH 128
           +D +L R+LRA K  +  + +  +K  KWR E+ V  L    +   K  + K   +    
Sbjct: 49  DDATLLRFLRARKFNLQQSLEMFIKCEKWRKEFGVDDLIKNFHYDEKEAVSKYYPQFYHK 108

Query: 129 RDMNGRPVIYIPARNHNANDRDIDEIT------KFIVYCLE-------EACKKCFEEVVD 175
            D++GRPV Y+     N + + + +IT      + +VY  E        AC +    +++
Sbjct: 109 TDIDGRPV-YVEQLG-NIDLKKLYQITTPERMMQNLVYEYEMLALKRFPACSRKAGGLIE 166

Query: 176 NLCIVFDLKDFGLSCMD--YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
             C + DLK  G++ +   Y  I+    +   +YPER+G   ++N+P  FS  + +I+G+
Sbjct: 167 TSCTIMDLKGVGITSIHSVYSYIRQASSISQDYYPERMGKFYVINAPWGFSSAFNLIKGF 226

Has a direct role in controlling cell septation and in forespore membrane formation.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P45816|SEC14_YARLI SEC14 cytosolic factor OS=Yarrowia lipolytica (strain CLIB 122 / E 150) GN=SEC14 PE=3 SV=2

 Score = 58.2 bits (139), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 59/220 (26%), Positives = 93/220 (42%), Gaps = 37/220 (16%)

Query: 38  GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKT-N 96
           G       +  E  QKL E   ++         +D +L R+LRA K   P  Q + +   
Sbjct: 20  GPTGYPGNLTAEQEQKLGELKMILLTKGYEDRTDDATLLRFLRARKFDVPLAQEMWENCE 79

Query: 97  KWRVEYDVASLTDQNPIIKSHLEKNKARVLK------HR-DMNGRPVIYIPARNHNANDR 149
           KWR E+        N I++    K K  V K      H+ D +GRPV Y+     N    
Sbjct: 80  KWRKEFGT------NTILEDFWYKEKKEVAKLYPQYYHKTDKDGRPV-YV----ENVGKV 128

Query: 150 DIDEITKF---------IVYCLEE-------ACKKCFEEVVDNLCIVFDLKDFGLSCMD- 192
           +I E+ K          +V+  E        AC +    +++  C + DLK   LS    
Sbjct: 129 NIHEMYKITTQERMLRNLVWEYESFVRHRLPACSRVVGHLIETSCTILDLKGVSLSSASQ 188

Query: 193 -YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIR 231
            Y  +K+   +   +YPER+G   ++N+P  FS  ++VI+
Sbjct: 189 VYGFLKDASNIGQNYYPERMGKFYLINAPFGFSTVFSVIK 228

Required for transport of secretory proteins from the Golgi complex. Catalyzes the transfer of phosphatidylinositol and phosphatidylcholine between membranes in vitro.

Yarrowia lipolytica (strain CLIB 122 / E 150) (taxid: 284591)

>sp|P33324|YKJ1_YEAST CRAL-TRIO domain-containing protein YKL091C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YKL091C PE=1 SV=2

 Score = 54.3 bits (129), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 23/215 (10%)

Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWR 99
            T   + +E  + L +   ++ + +  +  +D +L R+LRA K  ++ + +  ++T +WR
Sbjct: 20  GTPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWR 79

Query: 100 VEYDVASLTDQNPIIKSHLEKNKARVLK-------HRDMNGRPVIYIPARNHNAND---- 148
            EY   ++ +     K   +K + ++ K       H D +GRP+ +      N       
Sbjct: 80  EEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKI 139

Query: 149 -------RD-IDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQM--IKN 198
                  R+ + E   F  Y +  AC +    +++  C V DLK   LS   + +  IK+
Sbjct: 140 TTEKQMLRNLVKEYELFATYRVP-ACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKD 198

Query: 199 LIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
           +  +   +YPER+G   I++SP  FS  + +++ +
Sbjct: 199 VADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPF 233

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9CWP6|MSPD2_MOUSE Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2 PE=1 SV=2

 Score = 53.5 bits (127), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/149 (22%), Positives = 71/149 (47%), Gaps = 5/149 (3%)

Query: 85  VDPAFQAILKTNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNH 144
           VD   + + ++ +WR E+ V  L++ +  I   L +     L   D  G  + +I  + H
Sbjct: 58  VDETLKMLDESFQWRKEFSVNDLSESS--IPRWLLELGGIYLHGYDKEGNKLFWIRVKYH 115

Query: 145 NANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLS 204
             + + I +  K I + LE   K+   E    + ++FD+ + GL+ +D   ++ +I    
Sbjct: 116 IKDQKTIMDKKKLIAFWLERYAKR---ENGKPITVMFDMSETGLNSIDMDFVRFIINCFK 172

Query: 205 RHYPERLGVCLILNSPTLFSGCWTVIRGW 233
            +YP+ L   +I + P + +  + +++ W
Sbjct: 173 VYYPKYLSKIVIFDMPWIMNAAFKIVKSW 201

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
332374646	225	unknown [Dendroctonus ponderosae]	0.828	0.857	0.751	1e-84
242011707	228	SEC14 cytosolic factor, putative [Pedicu	0.828	0.846	0.751	3e-83
357608474	224	putative SEC14 cytosolic factor [Danaus	0.798	0.830	0.718	2e-79
321461072	224	hypothetical protein DAPPUDRAFT_308541 [	0.798	0.830	0.720	3e-79
427787411	228	Putative phosphatidylinositol transfer p	0.828	0.846	0.704	1e-78
241121661	228	phosphatidylinositol transfer protein SE	0.828	0.846	0.689	4e-76
442749959	228	Putative phosphatidylinositol transfer p	0.828	0.846	0.683	2e-75
157167477	222	phosphatidylinositol-phosphatidylcholine	0.798	0.837	0.721	3e-75
170044362	222	phosphatidylinositol-phosphatidylcholine	0.802	0.842	0.722	4e-75
195442485	223	GK12321 [Drosophila willistoni] gi|19416	0.789	0.825	0.718	1e-73

>gi|332374646|gb|AEE62464.1| unknown [Dendroctonus ponderosae]

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 145/193 (75%), Positives = 167/193 (86%)

Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRV 100
           A +    E  FQ LK RMK+IS+ADP QYHNDFSLKRYLRAF   D AFQAILKTNKWR 
Sbjct: 2   AGSPPTPEAQFQDLKSRMKLISEADPEQYHNDFSLKRYLRAFGSADSAFQAILKTNKWRK 61

Query: 101 EYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVY 160
           +Y VA L  ++ ++K +LE NKARVLKHRDM GRPV+YIPA+NHN ++RDIDE+TKFIVY
Sbjct: 62  DYGVAELNPEHSVVKKNLEANKARVLKHRDMQGRPVVYIPAKNHNVSERDIDELTKFIVY 121

Query: 161 CLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSP 220
           CLE+ACK+CFEEV+DNLCIVFDLKDFGL+CMDYQ+IKNLIWLLSRHYPERLGVCLI+NS 
Sbjct: 122 CLEDACKRCFEEVIDNLCIVFDLKDFGLNCMDYQLIKNLIWLLSRHYPERLGVCLIINSS 181

Query: 221 TLFSGCWTVIRGW 233
           T+FSGCW VI+GW
Sbjct: 182 TIFSGCWAVIKGW 194

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242011707|ref|XP_002426588.1| SEC14 cytosolic factor, putative [Pediculus humanus corporis] gi|212510737|gb|EEB13850.1| SEC14 cytosolic factor, putative [Pediculus humanus corporis]

 Score =  313 bits (803), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 145/193 (75%), Positives = 165/193 (85%)

Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRV 100
           A    V EED ++LK+RMK+I DADP Q+H+DFSLKRYLRAFK VD AFQAILKTNKWRV
Sbjct: 6   ANQVPVKEEDLKELKDRMKLIVDADPSQFHDDFSLKRYLRAFKTVDAAFQAILKTNKWRV 65

Query: 101 EYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVY 160
           EY+V  L    P IK H + NKARVL+HRDM GRPVIYIPA+NHN NDR IDE+TKFIVY
Sbjct: 66  EYNVDKLNLDCPEIKKHHDGNKARVLRHRDMAGRPVIYIPAKNHNVNDRQIDELTKFIVY 125

Query: 161 CLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSP 220
           CLEEACKKCF+EV+DNLCIVFDLKDFGLSCMDYQ++ NLIWLLS+HYPERLG+CLI N+P
Sbjct: 126 CLEEACKKCFQEVIDNLCIVFDLKDFGLSCMDYQLVNNLIWLLSKHYPERLGICLIKNAP 185

Query: 221 TLFSGCWTVIRGW 233
            LF+ CW VI+GW
Sbjct: 186 PLFNTCWVVIKGW 198

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357608474|gb|EHJ66029.1| putative SEC14 cytosolic factor [Danaus plexippus]

 Score =  301 bits (771), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 135/188 (71%), Positives = 168/188 (89%), Gaps = 2/188 (1%)

Query: 46  VNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVA 105
           V +ED ++LKERM++I++ADP Q+HND+SLKRYLRAFK VD AFQAILK+NKWRVEY VA
Sbjct: 8   VKDEDLKQLKERMQLIAEADPSQFHNDYSLKRYLRAFKTVDNAFQAILKSNKWRVEYGVA 67

Query: 106 SLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEA 165
           +L + + +I+ +   N+ARVL+HRDM GRP++YIPA+NH+++DR IDE+TKFIVYCLE+A
Sbjct: 68  NLHENHELIEKY--SNRARVLRHRDMIGRPIVYIPAKNHSSSDRSIDELTKFIVYCLEDA 125

Query: 166 CKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSG 225
            KKCFEEV+DNLCIVFDL +F LSCMDYQ++KNLIWLLSRHYPERLGVCLI+N+PT FSG
Sbjct: 126 SKKCFEEVIDNLCIVFDLNNFTLSCMDYQVLKNLIWLLSRHYPERLGVCLIINAPTFFSG 185

Query: 226 CWTVIRGW 233
           CW VI+GW
Sbjct: 186 CWAVIKGW 193

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321461072|gb|EFX72107.1| hypothetical protein DAPPUDRAFT_308541 [Daphnia pulex]

 Score =  300 bits (769), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 134/186 (72%), Positives = 164/186 (88%)

Query: 48  EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYDVASL 107
           E++F++LK R+K+ISDADP QYHND SL RYL+AFK VD AFQAILKTNKW+ EY+VA+L
Sbjct: 8   EQNFKELKNRLKLISDADPDQYHNDHSLTRYLKAFKTVDAAFQAILKTNKWKKEYNVAAL 67

Query: 108 TDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACK 167
           T+ +P IK++L   KARVL+HRDM GR VIYIPA+NH+ NDR+IDE+T+FIV+CLEEA K
Sbjct: 68  TEDHPTIKNNLTLKKARVLRHRDMQGRSVIYIPAKNHSVNDREIDELTQFIVFCLEEASK 127

Query: 168 KCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCW 227
           K FE+V+DN CIVFDLK+F L+CMDY +IKN+IWLLSRHYPERLGVCLI N+PT+FSGCW
Sbjct: 128 KSFEDVIDNFCIVFDLKNFSLTCMDYPLIKNIIWLLSRHYPERLGVCLIYNAPTVFSGCW 187

Query: 228 TVIRGW 233
            +IRGW
Sbjct: 188 AIIRGW 193

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|427787411|gb|JAA59157.1| Putative phosphatidylinositol transfer protein pdr16 [Rhipicephalus pulchellus]

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 136/193 (70%), Positives = 166/193 (86%)

Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRV 100
           +T + V+EEDF++LK+R++MI DADP Q+HND+S+KR+LRAF+ VD AFQAILK NKWR 
Sbjct: 6   STPSPVSEEDFEELKKRLQMIFDADPEQFHNDYSIKRFLRAFRTVDAAFQAILKCNKWRT 65

Query: 101 EYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVY 160
           EY V S++  +P IK ++E  KA VL +RD  GRPVIYIPA  HN  +R+IDE+T+FIVY
Sbjct: 66  EYGVKSISANDPDIKRNIEAKKAMVLPNRDFYGRPVIYIPACKHNVQEREIDELTRFIVY 125

Query: 161 CLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSP 220
            LEEACKKCFEEVVDNLCI+FDLKDFGL+ MDY +IKNLIWLLS+HYPERLG+CLILNSP
Sbjct: 126 ILEEACKKCFEEVVDNLCIIFDLKDFGLNSMDYPLIKNLIWLLSKHYPERLGICLILNSP 185

Query: 221 TLFSGCWTVIRGW 233
           T+FSGCW+VIRGW
Sbjct: 186 TIFSGCWSVIRGW 198

Source: Rhipicephalus pulchellus

Species: Rhipicephalus pulchellus

Genus: Rhipicephalus

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|241121661|ref|XP_002403290.1| phosphatidylinositol transfer protein SEC14, putative [Ixodes scapularis] gi|215493399|gb|EEC03040.1| phosphatidylinositol transfer protein SEC14, putative [Ixodes scapularis]

 Score =  290 bits (741), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 133/193 (68%), Positives = 163/193 (84%)

Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRV 100
            T A V++EDF+++K+R+KMI DADP Q+HND+S+KR+LRAF  VD  FQAILK NKWRV
Sbjct: 6   TTPAPVSQEDFEEVKKRLKMIFDADPEQFHNDYSIKRFLRAFHTVDNTFQAILKCNKWRV 65

Query: 101 EYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVY 160
           EY V S++  +P IK ++E  KA VL +RD  GRPVIYIPA  HN  +R+I+E+T+FIVY
Sbjct: 66  EYGVKSISKDDPDIKRNIECKKAMVLPNRDFYGRPVIYIPACKHNVQEREINELTRFIVY 125

Query: 161 CLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSP 220
            LEEACKKCFEEVVDNLCI+FDLKDFGL+ MDY +IKNLIWLLS+HYPERLG+CL+LN+P
Sbjct: 126 ILEEACKKCFEEVVDNLCIIFDLKDFGLNSMDYPLIKNLIWLLSKHYPERLGICLVLNAP 185

Query: 221 TLFSGCWTVIRGW 233
           T+FSGCW VIRGW
Sbjct: 186 TIFSGCWGVIRGW 198

Source: Ixodes scapularis

Species: Ixodes scapularis

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442749959|gb|JAA67139.1| Putative phosphatidylinositol transfer protein pdr16 [Ixodes ricinus]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 132/193 (68%), Positives = 162/193 (83%)

Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRV 100
            T   V++EDF+++K+R+KMI DADP Q+HND+S+KR+LRAF  VD  FQAILK NKWRV
Sbjct: 6   TTPVPVSQEDFEEVKKRLKMIFDADPEQFHNDYSIKRFLRAFHTVDNTFQAILKCNKWRV 65

Query: 101 EYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVY 160
           EY V S++  +P IK ++E  KA VL +RD  GRPVIYIPA  HN  +R+I+E+T+FIVY
Sbjct: 66  EYGVKSISKDDPDIKRNIECKKAMVLPNRDFYGRPVIYIPACKHNVQEREINELTRFIVY 125

Query: 161 CLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSP 220
            LEEACKKCFEEVVDNLCI+FDLKDFGL+ MDY +IKNLIWLLS+HYPERLG+CL+LN+P
Sbjct: 126 ILEEACKKCFEEVVDNLCIIFDLKDFGLNSMDYPLIKNLIWLLSKHYPERLGICLVLNAP 185

Query: 221 TLFSGCWTVIRGW 233
           T+FSGCW VIRGW
Sbjct: 186 TIFSGCWGVIRGW 198

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157167477|ref|XP_001654815.1| phosphatidylinositol-phosphatidylcholine transfer protein, putative [Aedes aegypti] gi|108882440|gb|EAT46665.1| AAEL002170-PA [Aedes aegypti]

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 137/190 (72%), Positives = 159/190 (83%), Gaps = 4/190 (2%)

Query: 44  AEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYD 103
           A VN  D   LKERMK+I++ADP QYHN+FSL+RYLRAFK VD AFQAILKTNKWR EY 
Sbjct: 6   AAVNLADLASLKERMKLIAEADPKQYHNEFSLRRYLRAFKTVDAAFQAILKTNKWRQEYG 65

Query: 104 VASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLE 163
           V +L D +P I ++   NKARVLKHRD  GRPVIYIPA+NH++ +RDIDE+TKFIV+CLE
Sbjct: 66  VETLGD-SPAIAAN--ANKARVLKHRDCTGRPVIYIPAKNHSS-ERDIDELTKFIVHCLE 121

Query: 164 EACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLF 223
           EACK+CFEEV DNLCIVFDL +F  SCMDYQ+IKNLIWLLS+HYPERLG CLILN+P +F
Sbjct: 122 EACKRCFEEVTDNLCIVFDLAEFSTSCMDYQLIKNLIWLLSKHYPERLGACLILNAPMVF 181

Query: 224 SGCWTVIRGW 233
           S  W VI+GW
Sbjct: 182 STIWPVIKGW 191

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170044362|ref|XP_001849820.1| phosphatidylinositol-phosphatidylcholine transfer protein [Culex quinquefasciatus] gi|167867537|gb|EDS30920.1| phosphatidylinositol-phosphatidylcholine transfer protein [Culex quinquefasciatus]

 Score =  286 bits (733), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 138/191 (72%), Positives = 157/191 (82%), Gaps = 4/191 (2%)

Query: 43  AAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEY 102
           AA VN  D   LKERMK+I+DADP QYHN+FSLKRYLRAFK VD AFQAILKTNKWR EY
Sbjct: 5   AAPVNPADLAALKERMKIIADADPKQYHNEFSLKRYLRAFKTVDAAFQAILKTNKWREEY 64

Query: 103 DVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCL 162
            V  L DQ P I ++   NKARVL+HRD  GRPVIYIPA+NH++ +RDIDE+TKFIVYCL
Sbjct: 65  GVDRLADQ-PAIAAN--ANKARVLRHRDCTGRPVIYIPAKNHSS-ERDIDELTKFIVYCL 120

Query: 163 EEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTL 222
           +EACKKCFEEV DNLCIVFDL  F  SCMDYQ+IKNLIWLLS+H+PERLG CL+LN+P +
Sbjct: 121 DEACKKCFEEVTDNLCIVFDLAGFSTSCMDYQLIKNLIWLLSKHFPERLGACLVLNAPMV 180

Query: 223 FSGCWTVIRGW 233
           FS  W VI+ W
Sbjct: 181 FSTIWPVIKAW 191

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195442485|ref|XP_002068985.1| GK12321 [Drosophila willistoni] gi|194165070|gb|EDW79971.1| GK12321 [Drosophila willistoni]

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 135/188 (71%), Positives = 154/188 (81%), Gaps = 4/188 (2%)

Query: 44  AEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILKTNKWRVEYD 103
           A VNE+D + LKERMK+I DADP QYHNDFSL+RYLRAFK  D AFQAILKTNKWR  Y 
Sbjct: 7   APVNEQDLKDLKERMKLIVDADPTQYHNDFSLRRYLRAFKTTDAAFQAILKTNKWRETYG 66

Query: 104 VASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLE 163
           VA L D +   +S LE  KARVL+HRD  GRPV+YIPA+NHNA+ RDIDE+T+FIVY LE
Sbjct: 67  VAKLGDMD---RSGLE-GKARVLRHRDCIGRPVVYIPAKNHNASARDIDELTRFIVYNLE 122

Query: 164 EACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLF 223
           EACKKCFEEV D LCIVFDL DF  SCMDYQ+++NLIWLLS+H+PERLG+CLI+NSP LF
Sbjct: 123 EACKKCFEEVTDRLCIVFDLADFSTSCMDYQLVQNLIWLLSKHFPERLGICLIINSPGLF 182

Query: 224 SGCWTVIR 231
           S  W  IR
Sbjct: 183 STIWPAIR 190

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	233
DICTYBASE|DDB_G0275959	247	DDB_G0275959 "cellular retinal	0.763	0.720	0.291	2.1e-20
POMBASE|SPAC3H8.02	444	SPAC3H8.02 "sec14 cytosolic fa	0.686	0.360	0.329	5.8e-19
ASPGD|ASPL0000009309	585	AN3709 [Emericella nidulans (t	0.442	0.176	0.413	9.4e-19
SGD|S000004372	408	CSR1 "Phosphatidylinositol tra	0.523	0.299	0.365	6.9e-15
POMBASE|SPAC589.09	388	SPAC589.09 "sec14 cytosolic fa	0.626	0.376	0.283	2.1e-14
ASPGD|ASPL0000053954	471	AN0485 [Emericella nidulans (t	0.442	0.218	0.384	2.7e-14
DICTYBASE|DDB_G0269182	364	rsc5 "cellular retinaldehyde-b	0.772	0.494	0.271	3.7e-14
CGD|CAL0001373	621	orf19.5711 [Candida albicans (	0.579	0.217	0.338	7.6e-14
TAIR|locus:2138606	301	AT4G08690 "AT4G08690" [Arabido	0.768	0.594	0.267	1.2e-12
TAIR|locus:2161942	263	AT5G63060 "AT5G63060" [Arabido	0.738	0.653	0.290	2.5e-11

DICTYBASE|DDB_G0275959 DDB_G0275959 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 241 (89.9 bits), Expect = 2.1e-20, P = 2.1e-20
 Identities = 54/185 (29%), Positives = 97/185 (52%)

Query:    54 LKERMKMISDA---DPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEY-DVASLT 108
             +K ++  I+D      +Q  +D    R+LRA K  +  +F  + +  K+R  + DV    
Sbjct:    19 IKSKIAEINDPVVEKEIQQLDDSMTLRFLRARKWNLKDSFDMLYEALKFRATFQDVGVEG 78

Query:   109 DQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKK 168
                 ++ + L+  K+      D  GRPV  +    H++ +RD++E  ++ VY +E   K 
Sbjct:    79 ITESMVVNELKSGKS-YFHGVDKGGRPVCIVKTSRHDSYNRDLNESMRYCVYVMENG-KS 136

Query:   169 CFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWT 228
               ++ ++   ++FD+ DF    MDY ++K ++ L  + YPE L  CLILN+P +F G W 
Sbjct:   137 MLKDGIETCTLIFDMSDFSSKNMDYPLVKFMVELFQKFYPESLQKCLILNAPWIFMGIWH 196

Query:   229 VIRGW 233
             +I+ W
Sbjct:   197 IIKHW 201

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAC3H8.02 SPAC3H8.02 "sec14 cytosolic factor family phosphatidylinositol transporter (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 233 (87.1 bits), Expect = 5.8e-19, P = 5.8e-19
 Identities = 56/170 (32%), Positives = 86/170 (50%)

Query:    72 DFSLKRYLRAFK-QVDPAFQAILKTNKWRV-EYDVASLT------DQNPIIKSHLEKNKA 123
             D  L R+LRA K  V+ A +  +KT  WR  E +V  +       D++      L   K 
Sbjct:   124 DGLLLRFLRARKWNVEAALEMFMKTVHWRSREMNVGEIVCNADHLDKDDDFVRQLRIGKC 183

Query:   124 RVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDL 183
              +    D + RPV YI AR H   D   + + +  V+ +E A +   +  ++   +VFD+
Sbjct:   184 FIFGE-DKHNRPVCYIRARLHKVGDVSPESVERLTVWVMETA-RLILKPPIETATVVFDM 241

Query:   184 KDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
              DF +S MDY  +K +I     HYPE LG C++  +P LF G W++I+ W
Sbjct:   242 TDFSMSNMDYGPLKFMIKCFEAHYPECLGECIVHKAPWLFQGVWSIIKSW 291

GO:0005737 "cytoplasm" evidence=ISO

GO:0008526 "phosphatidylinositol transporter activity" evidence=ISO

GO:0015914 "phospholipid transport" evidence=ISO

GO:0071852 "fungal-type cell wall organization or biogenesis" evidence=ISO

ASPGD|ASPL0000009309 AN3709 [Emericella nidulans (taxid:162425)]

 Score = 234 (87.4 bits), Expect = 9.4e-19, P = 9.4e-19
 Identities = 43/104 (41%), Positives = 63/104 (60%)

Query:   130 DMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLS 189
             D  GRP+ Y+  R H A D+DI+ + +F V+ +E A +      V+  C++FD+ DF L+
Sbjct:   333 DKLGRPICYVRVRLHRAGDQDIEALDRFTVFTIESA-RMMLVPPVETACVIFDMTDFSLA 391

Query:   190 CMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
              MDY  +K +I     +YPE LGV LI  +P +FS  W VI+GW
Sbjct:   392 NMDYHPVKFMIKCFEANYPESLGVVLIHKAPWIFSSIWNVIKGW 435

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

SGD|S000004372 CSR1 "Phosphatidylinositol transfer protein" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 195 (73.7 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 46/126 (36%), Positives = 73/126 (57%)

Query:   109 DQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKK 168
             ++  +IK+ LE  KA +  + D + RPVI +  R H+++D+   E+ KF +  +E++ K 
Sbjct:   156 NETGVIKN-LELQKATIQGY-DNDMRPVILVRPRLHHSSDQTEQELEKFSLLVIEQS-KL 212

Query:   169 CFEEVVD-NLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCW 227
              F+E    +  I+FDL  F +S MDY  +K LI     HYPE LG  LI  +P +F+  W
Sbjct:   213 FFKENYPASTTILFDLNGFSMSNMDYAPVKFLITCFEAHYPESLGHLLIHKAPWIFNPIW 272

Query:   228 TVIRGW 233
              +I+ W
Sbjct:   273 NIIKNW 278

GO:0005768 "endosome" evidence=IEA;IDA

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IGI

GO:0005811 "lipid particle" evidence=IDA

GO:0046488 "phosphatidylinositol metabolic process" evidence=IGI

GO:1901352 "negative regulation of phosphatidylglycerol biosynthetic process" evidence=IGI

GO:0006893 "Golgi to plasma membrane transport" evidence=IGI

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IGI;IMP;IDA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IGI

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0009395 "phospholipid catabolic process" evidence=IEA

GO:0008526 "phosphatidylinositol transporter activity" evidence=IDA

GO:0015914 "phospholipid transport" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006869 "lipid transport" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0016042 "lipid catabolic process" evidence=IEA

GO:0008525 "phosphatidylcholine transporter activity" evidence=IDA

POMBASE|SPAC589.09 SPAC589.09 "sec14 cytosolic factor family (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 190 (71.9 bits), Expect = 2.1e-14, P = 2.1e-14
 Identities = 46/162 (28%), Positives = 83/162 (51%)

Query:    88 AFQAILKTNKWRVEYDVASLTDQNPIIKSH------LEKNKA-RV-LKHRDMNGRPVIYI 139
             A Q ++ T +WRV+  V  + ++  +          LE+ +  +V +  RD++ RP+ YI
Sbjct:    97 ASQKLINTLQWRVDTGVERIVERGELYAKETNDDQFLEQLRTGKVTMLGRDLSDRPICYI 156

Query:   140 PARNHNANDRDIDEITKFIVYCLEEAC-----KKCFEEVVD---NLCIVFDLKDFGLSCM 191
                 H  +    + + +  V+ +E        +K  ++ +D   N+ ++FDL +F L  M
Sbjct:   157 QVHLHQPSKLTQNSLREMTVWVMETMRLFLRPQKTLKDSMDSPQNVNVLFDLSNFSLHNM 216

Query:   192 DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
             DY  +K L   L  +YP+ LGVC++  SP +F   W +I+GW
Sbjct:   217 DYSFVKYLASCLEYYYPQSLGVCILHKSPWIFRSVWNIIKGW 258

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0008525 "phosphatidylcholine transporter activity" evidence=ISM

GO:0008526 "phosphatidylinositol transporter activity" evidence=ISM

GO:0015914 "phospholipid transport" evidence=ISO

GO:0071852 "fungal-type cell wall organization or biogenesis" evidence=ISO

ASPGD|ASPL0000053954 AN0485 [Emericella nidulans (taxid:162425)]

 Score = 191 (72.3 bits), Expect = 2.7e-14, P = 2.7e-14
 Identities = 40/104 (38%), Positives = 59/104 (56%)

Query:   130 DMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLS 189
             D  GRPV  +  + H  + +  + I +FI++ +E   +      VD + IVFDL  F LS
Sbjct:   202 DKQGRPVGVVRVKLHKPSAQSTEAINRFILHIIEST-RLLLVPPVDTVTIVFDLTGFSLS 260

Query:   190 CMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
              M+Y  +K +I     +YPE LG  LI N+P +FSG W +I+GW
Sbjct:   261 NMEYPPVKFIIECFQDNYPECLGNLLIHNAPWIFSGIWKIIKGW 304

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

DICTYBASE|DDB_G0269182 rsc5 "cellular retinaldehyde-binding/triple function domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 187 (70.9 bits), Expect = 3.7e-14, P = 3.7e-14
 Identities = 50/184 (27%), Positives = 83/184 (45%)

Query:    49 EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFKQVDPAFQAILK-TNKWRVEYDVASL 107
             E F+++K     ++D   + +  D    RYLRA   +    + +L+ T +WR ++    +
Sbjct:    50 EAFKEIKSNFSDLTDPTDIAFCTDMCFLRYLRARNYIVSKSEKMLRDTLEWRKKFRPQDI 109

Query:   108 TDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACK 167
                  I    +       +  RD  GRP+I+   RN    +   +   K +VY LE+   
Sbjct:   110 QLGGDI--REIGSAGCVYVNKRDKKGRPIIFAVPRNDTLKNVPSELKFKNLVYWLEQGFS 167

Query:   168 KCFE-EVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGC 226
             +  E + ++  C + D KDFG   MD +     +  L  H PER+G  L L+ P LF   
Sbjct:   168 RMDEPKGIEQFCFIVDYKDFGSGNMDMKTNLEAMHFLLDHCPERMGQSLFLDPPALFWFA 227

Query:   227 WTVI 230
             W +I
Sbjct:   228 WKII 231

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

CGD|CAL0001373 orf19.5711 [Candida albicans (taxid:5476)]

 Score = 189 (71.6 bits), Expect = 7.6e-14, P = 7.6e-14
 Identities = 47/139 (33%), Positives = 65/139 (46%)

Query:    98 WRVEYDVAS-LTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITK 156
             W +E D  S L   N     +    K+ + K RD N  P+    A+ H   D  +++  +
Sbjct:   354 WAMEADGPSYLNGTNKGFIKNFTTEKSWI-KGRDKNNNPIFMFQAKKHLTADSPLEQNQR 412

Query:   157 FIVYCLE--EACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVC 214
             + V  +E      +   E VD   IVFDL  F L   DY  IK L  +   HYPE LG  
Sbjct:   413 YAVVTIEWTRLFLREVSESVDTCTIVFDLTGFSLKNADYATIKFLADVFEAHYPETLGFI 472

Query:   215 LILNSPTLFSGCWTVIRGW 233
             LI N+P +FS  W +I+ W
Sbjct:   473 LIHNAPWIFSTVWNIIKNW 491

GO:0005768 "endosome" evidence=IEA

GO:0005811 "lipid particle" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0008526 "phosphatidylinositol transporter activity" evidence=IEA

GO:2001247 "positive regulation of phosphatidylcholine biosynthetic process" evidence=IEA

GO:0006655 "phosphatidylglycerol biosynthetic process" evidence=IEA

GO:0046488 "phosphatidylinositol metabolic process" evidence=IEA

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IEA

GO:0045717 "negative regulation of fatty acid biosynthetic process" evidence=IEA

GO:0015914 "phospholipid transport" evidence=IEA

TAIR|locus:2138606 AT4G08690 "AT4G08690" [Arabidopsis thaliana (taxid:3702)]

 Score = 171 (65.3 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 50/187 (26%), Positives = 86/187 (45%)

Query:    48 EEDFQKLKERMKMISDA-DPLQ-YHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDV 104
             EE+  K++E  K++    + L  + +D ++ RYLRA    V  A + + +T KWRV+Y  
Sbjct:    17 EEEQAKIEEVRKLLGPLPEKLSSFCSDDAVLRYLRARNWHVKKATKMLKETLKWRVQYKP 76

Query:   105 ASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEE 164
               +  +   +    E  K       D  GRPV+ +  R    N + +    +++VYC+E 
Sbjct:    77 EEICWEE--VAGEAETGKIYRSSCVDKLGRPVLIM--RPSVENSKSVKGQIRYLVYCMEN 132

Query:   165 ACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFS 224
             A +       + +  + D   + L+ +  +  K    +L  HYPERL   ++ N P  F 
Sbjct:   133 AVQN-LPPGEEQMVWMIDFHGYSLANVSLRTTKETAHVLQEHYPERLAFAVLYNPPKFFE 191

Query:   225 GCWTVIR 231
               W V R
Sbjct:   192 PFWKVAR 198

GO:0005215 "transporter activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0042546 "cell wall biogenesis" evidence=RCA

TAIR|locus:2161942 AT5G63060 "AT5G63060" [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 2.5e-11, P = 2.5e-11
 Identities = 52/179 (29%), Positives = 84/179 (46%)

Query:    53 KLKERMKMISDADPL-QYHNDFS--LKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLT 108
             ++KER+     + PL +Y  D    +  +L+  +  VD A   + K  KWR E+ V  L+
Sbjct:    50 EVKERLAKDCTSLPLGKYGRDDEDMILWFLKDRRFSVDEAIGKLTKAIKWRHEFKVDELS 109

Query:   109 DQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKK 168
             + +  IK+  +  KA V    D+ GRPV+ +    H     D  E  K  V+ LE+A  K
Sbjct:   110 EDS--IKAATDTGKAYVHGFLDVKGRPVVIVAPAKHIPGLLDPIEDEKLCVFLLEKALSK 167

Query:   169 CFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCW 227
                     +  +FDL+ FG    D + +  L  +   +YP RL   L +++P +F   W
Sbjct:   168 -LPAGQHKILGIFDLRGFGSQNADLKFLTFLFDVFYYYYPSRLDEVLFVDAPFIFQPIW 225

GO:0005215 "transporter activity" evidence=ISS

GO:0006810 "transport" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	233
pfam00650	152	pfam00650, CRAL_TRIO, CRAL/TRIO domain	9e-29
smart00516	158	smart00516, SEC14, Domain in homologues of a S	4e-24
cd00170	157	cd00170, SEC14, Sec14p-like lipid-binding domain	3e-20
pfam13716	149	pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain	5e-07

>gnl|CDD|216042 pfam00650, CRAL_TRIO, CRAL/TRIO domain

 Score =  105 bits (264), Expect = 9e-29
 Identities = 37/112 (33%), Positives = 63/112 (56%), Gaps = 3/112 (2%)

Query: 125 VLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLK 184
            L  RD  GRPV+Y+    H+     ++E+ +F+V  LE A     E  ++ + ++ D+K
Sbjct: 5   YLHGRDKEGRPVLYLRPGRHDPKKSSLEELVRFLVLVLERALLLLPEGQIEGITVIIDMK 64

Query: 185 DFGLSCMD---YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
              LS MD      +K ++ +L  +YPERLG  LI+N+P +F+  W +I+ +
Sbjct: 65  GLSLSNMDKWPISFLKKILKILQDNYPERLGKILIVNAPWIFNVIWKLIKPF 116

Length = 152

>gnl|CDD|214706 smart00516, SEC14, Domain in homologues of a S

 Score = 93.5 bits (233), Expect = 4e-24
 Identities = 31/105 (29%), Positives = 59/105 (56%), Gaps = 1/105 (0%)

Query: 130 DMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEE-VVDNLCIVFDLKDFGL 188
           D +GRPV+   A   +     ++E+ +++VY LE+  ++  +   ++   ++FDLK   +
Sbjct: 16  DKDGRPVLIERAGRFDLKSVTLEELLRYLVYVLEKILQEEKKTGGIEGFTVIFDLKGLSM 75

Query: 189 SCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
           S  D  +++ ++ +L  HYPERLG   I+N P  F   W +I+ +
Sbjct: 76  SNPDLSVLRKILKILQDHYPERLGKVYIINPPWFFRVLWKIIKPF 120

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 158

>gnl|CDD|238099 cd00170, SEC14, Sec14p-like lipid-binding domain

 Score = 83.6 bits (207), Expect = 3e-20
 Identities = 38/119 (31%), Positives = 65/119 (54%), Gaps = 4/119 (3%)

Query: 118 LEKNKARVLKHRDMNGRPVIYIPARNHNANDR-DIDEITKFIVYCLEEACKKCFEEVVDN 176
            E  K   L  RD  GRPV+ I A N + +   D +E+ +++VY LE+  ++  +E V+ 
Sbjct: 5   KELGKVGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQED-DEQVEG 63

Query: 177 LCIVFDLKDFGLSCM--DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
             ++ DLK   LS +  D  ++K ++ +L  +YPERL    I+N P  F   W +++ +
Sbjct: 64  FVVIIDLKGLSLSHLLPDPSLLKKILKILQDNYPERLKAVYIINPPWFFKVLWKIVKPF 122

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits. Length = 157

>gnl|CDD|222339 pfam13716, CRAL_TRIO_2, Divergent CRAL/TRIO domain

 Score = 47.3 bits (113), Expect = 5e-07
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 6/96 (6%)

Query: 129 RDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGL 188
           RD  GRPV+   A+   A+D   D++ + + Y L    ++   +      +V D      
Sbjct: 8   RDKEGRPVLVFDAKRLPASDL--DDLDRLLFYLLSILSEELKPKG---FVVVIDHTGVTR 62

Query: 189 SCMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFS 224
           +   +  +K L  LL R +P+ L   + +  P+ F 
Sbjct: 63  NKPSWSWLKKLYKLLPRAFPKNL-KAVYIVHPSTFL 97

This family includes divergent members of the CRAL-TRIO domain family. This family includes ECM25 that contains a divergent CRAL-TRIO domain identified by Gallego and colleagues. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	233
KOG1470|consensus	324		100.0
KOG1471|consensus	317		99.97
PF00650	159	CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 T	99.91
smart00516	158	SEC14 Domain in homologues of a S. cerevisiae phos	99.87
cd00170	157	SEC14 Sec14p-like lipid-binding domain. Found in s	99.8
PF13716	149	CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q	98.98
PF03765	55	CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPr	98.77
KOG4406|consensus	467		97.62
PF02845	42	CUE: CUE domain; InterPro: IPR003892 This domain m	88.9
smart00546	43	CUE Domain that may be involved in binding ubiquit	88.03
PF14555	43	UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A	82.77

>KOG1470|consensus

Probab=100.00  E-value=2.5e-38  Score=263.91  Aligned_cols=180  Identities=31%  Similarity=0.575  Sum_probs=159.0

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCC-ccCCchHHHHHHHhcCceEe
Q psy12483         49 EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVAS-LTDQNPIIKSHLEKNKARVL  126 (233)
Q Consensus        49 ~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~-l~~~~~~~~~~~~~g~~~~l  126 (233)
                      +.+.+++..+..... ....+++|.+++||||++| ||++|.+++.+++.||+.+++.. +.++  ++..+++.|..++ 
T Consensus        27 ~k~~~~~~~~~pl~~-~~~~~~~d~cllRfLrAr~wnv~kA~kml~~tL~WR~~~~~~~~~~~~--Ev~~e~~tGK~yi-  102 (324)
T KOG1470|consen   27 DKINSVKKLLGPLTE-KESKWCSDACLLRFLRARKWNVKKASKMLSNTLKWRRSFGPEEVIEAD--EVAAELETGKAYI-  102 (324)
T ss_pred             HHHHHHHHhhcchhh-hhHhcCcHHHHHHHHHHcCCcHHHHHHHHHHHhHHHHhcCCccccCHH--HHHHHhhcCcEEE-
Confidence            345555555533221 1246889999999999999 99999999999999999999987 5554  5999999999876 


Q ss_pred             cccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCCCHHHHHHHHHHHhch
Q psy12483        127 KHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRH  206 (233)
Q Consensus       127 ~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~~~~~~k~~~~~~q~~  206 (233)
                      .|+|++||||+|++++.+.++..+.++..|+++|+||.++..+++ +++++++++|++|+|+++++++.++.++.++|+|
T Consensus       103 ~G~D~~gRPVl~~~~~~~~qn~~t~~~~~r~~Vy~mE~Ai~~lp~-~qe~~~~L~D~~~fs~sN~d~~~~k~~~~~lq~h  181 (324)
T KOG1470|consen  103 LGHDKDGRPVLYLRPRPHRQNTKTQKELERLLVYTLENAILFLPP-GQEQFVWLFDLTGFSMSNPDIKFLKELLHILQDH  181 (324)
T ss_pred             ecccCCCCeEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHHhCCC-CcceEEEEEecccCcccCCCcHHHHHHHHHHHHh
Confidence            579999999999999888888889999999999999999987754 4778999999999999999999999999999999


Q ss_pred             hhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        207 YPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       207 yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      ||+||++.+|+|+||+|..+|+++|||
T Consensus       182 YPErLg~a~l~~~P~iF~~~wkiikpf  208 (324)
T KOG1470|consen  182 YPERLGKALLVNAPWIFQPFWKIIKPF  208 (324)
T ss_pred             ChHHhhhhhhcCChHHHHHHHHHhhhc
Confidence            999999999999999999999999998

>KOG1471|consensus

Probab=99.97  E-value=4.7e-30  Score=220.21  Aligned_cols=194  Identities=27%  Similarity=0.407  Sum_probs=151.9

Q ss_pred             ccCCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCccCCchHH
Q psy12483         36 EMGDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLTDQNPII  114 (233)
Q Consensus        36 ~~~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~~~~~~~  114 (233)
                      +..+..+.++.+++.++++| |+...++ .+....||..|+||||+++ |+++|++++.+++.||..+..+.+..+....
T Consensus        11 ~~~~~~~~~~~~~~~i~~lr-~~~~~~~-l~~~~~~d~~LlRfLra~~f~ve~a~~~l~~~l~~r~~~~~d~i~~~~~~~   88 (317)
T KOG1471|consen   11 AKEELNEITESEEAVIAQLR-WLLQKPH-LPNKYDDDFNLLRFLRARKFDVEKAKQMLKRYLNWRKRNKLDEIFEDFEED   88 (317)
T ss_pred             cccccCCCcHHHHHHHHHHH-HHhhccC-CCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCCccHhhccccc
Confidence            34566788899999999999 6666553 2324788999999999999 9999999999999999999988876542122


Q ss_pred             HHHHHhcCceEecccCCCCCeEEEEeCCCcCCC----CCCHHHHHHHHH--------HHHHHHHHhhccCCcccEEEEEe
Q psy12483        115 KSHLEKNKARVLKHRDMNGRPVIYIPARNHNAN----DRDIDEITKFIV--------YCLEEACKKCFEEVVDNLCIVFD  182 (233)
Q Consensus       115 ~~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~----~~~~~~~~r~~~--------~~lE~~~~~~~~~~~~~~v~I~D  182 (233)
                      .... ...+...+|.|+.|+|+++-+.+..+..    .....+..++.+        ..+|...+. .+.+++|++.|+|
T Consensus        89 ~~~~-~~~~~~~~~~~~~g~~v~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~e~~~~~-~~~~~~g~~~I~D  166 (317)
T KOG1471|consen   89 DELL-KYYPQGLHGVDKEGRPVYIERLGKIDPKGLLKRTGSLDYLKYHFKEFEKVFKLVLELELKT-GERQISGIVTIFD  166 (317)
T ss_pred             hhhh-hhccccccccCCCCCEEEEeccCCCCcccceeeccHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCCcceeEEEEE
Confidence            2222 1234456899999999999998876532    234444444444        444444333 2568999999999


Q ss_pred             cCCCCCCCC---CHHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        183 LKDFGLSCM---DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       183 ~~g~~~~~~---~~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      ++|++++|+   .++.++.++.++|++||++++++||||+|++|+++|+++|||
T Consensus       167 l~G~~~~~~~~~~~~~~~~~~~~~q~~yPe~l~~~~iIN~P~~f~~~~~~ikpf  220 (317)
T KOG1471|consen  167 LKGVSLSHLLKPAPTLLKKILKILQDNYPERLKRIHIINAPTIFSALWKVVKPF  220 (317)
T ss_pred             CCCCcchhHHHHHHHHHHHHHHHHHHhCHHhhceEEEEcCchhHHHHHHHHhcc
Confidence            999999987   478899999999999999999999999999999999999998

>PF00650 CRAL_TRIO: CRAL/TRIO domain; InterPro: IPR001251 This entry defines the C-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=99.91  E-value=6.1e-25  Score=169.93  Aligned_cols=115  Identities=36%  Similarity=0.655  Sum_probs=95.7

Q ss_pred             HhcCceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhcc-CCcccEEEEEecCCCCCCCCC---HH
Q psy12483        119 EKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFE-EVVDNLCIVFDLKDFGLSCMD---YQ  194 (233)
Q Consensus       119 ~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~-~~~~~~v~I~D~~g~~~~~~~---~~  194 (233)
                      .+++..+++|+|++||||++++++++++...+.+++.+++++.+|.+++.++. .+++|+++|+|++|+++++++   ++
T Consensus         4 ~~~~~~~~~g~D~~gr~v~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~iiD~~g~~~~~~~~~~~~   83 (159)
T PF00650_consen    4 LKSGPFYLHGRDKDGRPVIYIRLGRFDPKKFSPEDVIRFFVYLLERMLKRMPEGGQVEGIVVIIDLSGFSLSNFDWWPIS   83 (159)
T ss_dssp             HTTSCEEEEEE-TTS-EEEEEEGTT--HHTS-HHHHHHHHHHHHHHHHHTHHHTSHHH-EEEEEE-TT--HHHHHCHHHH
T ss_pred             HCCeeEEECCCCCCcCEEEEEEcccCCCCcCCHHHHHHHHHHHHHHHHhhhcccccceeEEEEEeCCCceEeccccchhh
Confidence            34556678999999999999999999988889999999999999999876665 789999999999999999887   89


Q ss_pred             HHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        195 MIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       195 ~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      .++.+++++|++||+|++++||+|+|++|+.+|+++|||
T Consensus        84 ~~k~~~~~~~~~yP~rl~~i~iin~p~~~~~~~~~~~~~  122 (159)
T PF00650_consen   84 FLKKIIQLLQDHYPERLGKIYIINAPWFFRVLWKIVKPF  122 (159)
T ss_dssp             HHHHHHHHHHHHSTTTEEEEEEES--TTHHHHHHHHGGG
T ss_pred             hhhhhhhhhcccCCccceeEEEEecChhhhhhHhHHHhh
Confidence            999999999999999999999999999999999999987

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1OLM_E 1O6U_E 3Q8G_A 3B7Q_B 3B7Z_A ....

>smart00516 SEC14 Domain in homologues of a S

Probab=99.87  E-value=1.3e-21  Score=151.12  Aligned_cols=106  Identities=30%  Similarity=0.651  Sum_probs=99.6

Q ss_pred             ccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHh-hccCCcccEEEEEecCCCCCCCCCHHHHHHHHHHHhch
Q psy12483        128 HRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKK-CFEEVVDNLCIVFDLKDFGLSCMDYQMIKNLIWLLSRH  206 (233)
Q Consensus       128 g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~-~~~~~~~~~v~I~D~~g~~~~~~~~~~~k~~~~~~q~~  206 (233)
                      |+|++||||++++++.+++...+.+++++++++.+|.+... ....+++|+++|+|++|+++++++++.+|.++++++.+
T Consensus        14 g~D~~GrpV~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~i~D~~~~~~~~~~~~~lk~~~~~~~~~   93 (158)
T smart00516       14 GYDKDGRPVLIFRAGRFDLKSVTLEELLRYLVYVLEKILQREKKTGGIEGFTVIFDLKGLSMSNPDLSVLRKILKILQDH   93 (158)
T ss_pred             CCCCCcCEEEEEeccccccCcCCHHHHHHHHHHHHHHHHHHHhcCCCeeeEEEEEECCCCCcccccHHHHHHHHHHHHHH
Confidence            79999999999999999888899999999999999998764 24678899999999999999999999999999999999


Q ss_pred             hhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        207 YPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       207 yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      ||++++++||||+|++++++|+++|+|
T Consensus        94 yp~~l~~i~ivn~p~~~~~~~~~~~~~  120 (158)
T smart00516       94 YPERLGKVLIINPPWFFRVLWKIIKPF  120 (158)
T ss_pred             hHHHhCeEEEECCCHHHHHHHHHHHhh
Confidence            999999999999999999999999986

cerevisiae phosphatidylinositol transfer protein (Sec14p). Domain in homologues of a S. cerevisiae phosphatidylinositol transfer protein (Sec14p) and in RhoGAPs, RhoGEFs and the RasGAP, neurofibromin (NF1). Lipid-binding domain. The SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>cd00170 SEC14 Sec14p-like lipid-binding domain

Probab=99.80  E-value=3.6e-19  Score=136.30  Aligned_cols=110  Identities=33%  Similarity=0.651  Sum_probs=94.6

Q ss_pred             ceEecccCCCCCeEEEEeCCCcCC-CCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC--CHHHHHHH
Q psy12483        123 ARVLKHRDMNGRPVIYIPARNHNA-NDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM--DYQMIKNL  199 (233)
Q Consensus       123 ~~~l~g~d~~GrpV~~~~~~~~~~-~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~--~~~~~k~~  199 (233)
                      ..+..|+|++||||++++++..+. ...+.++++++.++.+|.++... ....+|+++|+|++|++++++  +++.+|++
T Consensus        10 ~~~~~~~D~~gr~V~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~-~~~~~~~~~i~D~~~~~~~~~~~~~~~~k~~   88 (157)
T cd00170          10 VGYLGGRDKEGRPVLIIRAGNKDLSKSLDSEELLRYLVYTLEKLLQED-DEQVEGFVVIIDLKGLSLSHLLPDPSLLKKI   88 (157)
T ss_pred             ccccCCCCCCcCEEEEEecCCcchhhcCCHHHHHHHHHHHHHHHHhhh-hhcccceEEEEECCCCChhccchhHHHHHHH
Confidence            344556799999999999985443 33455889999999999987653 334479999999999999998  78899999


Q ss_pred             HHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        200 IWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       200 ~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      +++++++||++++++||+|+|++++++|+++|+|
T Consensus        89 ~~~~~~~yp~~l~~v~ivn~p~~~~~~~~~~~~~  122 (157)
T cd00170          89 LKILQDNYPERLKAVYIINPPWFFKVLWKIVKPF  122 (157)
T ss_pred             HHHHHHhChHhhCeEEEECCCHhHHHHHHHHHHh
Confidence            9999999999999999999999999999999986

Found in secretory proteins, such as S. cerevisiae phosphatidylinositol transfer protein (Sec14p), and in lipid regulated proteins such as RhoGAPs, RhoGEFs and neurofibromin (NF1). SEC14 domain of Dbl is known to associate with G protein beta/gamma subunits.

>PF13716 CRAL_TRIO_2: Divergent CRAL/TRIO domain; PDB: 2D4Q_B 3PG7_B 2E2X_B 3P7Z_B 3PEG_A

Probab=98.98  E-value=8.3e-10  Score=84.46  Aligned_cols=100  Identities=25%  Similarity=0.396  Sum_probs=67.5

Q ss_pred             EecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC-CHHHHHHHHHHH
Q psy12483        125 VLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM-DYQMIKNLIWLL  203 (233)
Q Consensus       125 ~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~-~~~~~k~~~~~~  203 (233)
                      +..|+|++||||+++..... ++..   ++.+.+.|++..+..   .....++++|+|+++++..+- +...++.+.+.+
T Consensus         5 ~~gG~d~~g~pV~~~~~~~~-~~~~---~~~~ll~yl~~~l~~---~~~~~~f~vVid~~~~~~~~~~~~~~l~~~~~~l   77 (149)
T PF13716_consen    5 YPGGRDREGRPVVVFIASRL-PSSD---DLERLLLYLLSTLSE---EVVDKPFSVVIDHTGFSRSSEPSLSWLKQLYKLL   77 (149)
T ss_dssp             EEEEEBTTS-EEEEEEGGG--C-TT---HHHHHHHHHHHHH-T---TTTTS-EEEEEE-TT--GGG---HHHHHHTTTSS
T ss_pred             EecccCCCcCEEEEEECCcC-cchh---hHHHHHHHHHHhhhH---HhcCCCEEEEEEcCCCccccCCchHHHHHHHHHH
Confidence            45799999999999997766 4333   445555555554321   223457999999999988654 688999999999


Q ss_pred             hchhhhccCcEEEEcCCcccHHHh-hccc
Q psy12483        204 SRHYPERLGVCLILNSPTLFSGCW-TVIR  231 (233)
Q Consensus       204 q~~yP~rl~~i~ivN~p~~~~~~~-~ivk  231 (233)
                      ...|+..++++||+|++++++.++ .+.+
T Consensus        78 ~~~~~~nl~~vyiv~p~~~~k~~~~~~~~  106 (149)
T PF13716_consen   78 PRKYKKNLKKVYIVHPNWFLKKILATLLR  106 (149)
T ss_dssp             -HHHHHTEEEEEEES--HHHHHHHHHTTT
T ss_pred             HHHHhhceEEEEEECCCHHHHHHHHHHhc
Confidence            999999999999999999999888 4433

>PF03765 CRAL_TRIO_N: CRAL/TRIO, N-terminal domain; InterPro: IPR008273 This entry defines the N-terminal of various retinaldehyde/retinal-binding proteins that may be functional components of the visual cycle

Probab=98.77  E-value=2.2e-08  Score=63.43  Aligned_cols=47  Identities=36%  Similarity=0.555  Sum_probs=36.6

Q ss_pred             HHHHHHHHHHHHhh-------hCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483         48 EEDFQKLKERMKMI-------SDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT   95 (233)
Q Consensus        48 ~~~i~~lr~~l~~~-------~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~   95 (233)
                      ++++++|++.++..       .. ......+|.+|+|||||++ ||++|.++|.++
T Consensus         1 k~~l~~l~~~l~~~~~~~~~~~~-~~~~~~~d~~llRFLRARkf~v~~A~~mL~~t   55 (55)
T PF03765_consen    1 KQKLKQLREHLSELDEKAPGLWD-DEKEDHDDNFLLRFLRARKFDVEKAFKMLKKT   55 (55)
T ss_dssp             HHHHHHHHHHHHH--GGGTHHHT-THTSS-SHHHHHHHHHHTTT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhccchhcccc-cccCCCCHHHHHHHHHHccCCHHHHHHHHHhC
Confidence            46899999999874       12 2235779999999999999 999999999875

Cellular retinaldehyde-binding protein (CRALBP) carries 11-cis-retinol or 11-cis-retinaldehyde as endogenous ligands and may function as a substrate carrier protein that modulates interaction of these retinoids with visual cycle enzymes []. The multidomain protein Trio binds the LAR transmembrane tyrosine phosphatase, contains a protein kinase domain, and has separate rac-specific and rho-specific guanine nucleotide exchange factor domains []. Trio is a multifunctional protein that integrates and amplifies signals involved in coordinating actin remodeling, which is necessary for cell migration and growth. Other members of the family are transfer proteins that include, guanine nucleotide exchange factor that may function as an effector of RAC1, phosphatidylinositol/phosphatidylcholine transfer protein that is required for the transport of secretory proteins from the golgi complex and alpha-tocopherol transfer protein that enhances the transfer of the ligand between separate membranes.; PDB: 1OIZ_A 1R5L_A 1OIP_A 3HX3_A 3HY5_A 1AUA_A 3Q8G_A 3B7Q_B 3B7Z_A 3B7N_A ....

>KOG4406|consensus

Probab=97.62  E-value=0.00034  Score=60.84  Aligned_cols=105  Identities=14%  Similarity=0.340  Sum_probs=77.3

Q ss_pred             cCceEecc-cCCCCCeEEEEeCCCcCCCCCCHHH--HHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCCC-HHHH
Q psy12483        121 NKARVLKH-RDMNGRPVIYIPARNHNANDRDIDE--ITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMD-YQMI  196 (233)
Q Consensus       121 g~~~~l~g-~d~~GrpV~~~~~~~~~~~~~~~~~--~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~~-~~~~  196 (233)
                      +...++.+ .|+.||+|+++.+.+..++ ...++  ++++.++.++..++.       .++.++=-.|+...+.+ .+++
T Consensus        80 ei~qvi~~~~D~~gr~iivv~a~rlp~~-~eld~~~li~~~v~~id~~Ve~-------DYt~vYfh~gl~s~nkp~l~~l  151 (467)
T KOG4406|consen   80 EILQVIGDAKDKQGRKIIVVYACRLPSS-SELDDIRLISYLVYTIDKYVEN-------DYTLVYFHHGLPSDNKPYLQLL  151 (467)
T ss_pred             heeeeccCcccccCCeeEEEEEecCCch-hhhhhHHHHHHHHHHHHHHHhc-------cceeeehhcCCcccccchHHHH
Confidence            44445544 6999999999988776443 24444  788888988887643       15555555567666653 5666


Q ss_pred             HHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        197 KNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       197 k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      .....-+-.+|---++.+|+|++.|++.++|+++|||
T Consensus       152 ~~aYke~Dr~~~KNlKalYvvHptwfikvi~n~~kpl  188 (467)
T KOG4406|consen  152 FDAYKELDRNFKKNLKALYVVHPTWFIKVIWNLFKPL  188 (467)
T ss_pred             HHHHHHHHHHHhhhhhheEEecHHHHHHHHHHHHhhh
Confidence            6666666666888899999999999999999999996

>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=88.90  E-value=2.1  Score=24.95  Aligned_cols=38  Identities=29%  Similarity=0.344  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483         48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK   94 (233)
Q Consensus        48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~   94 (233)
                      .+.+++|++.+.         .++...+..-|..++ |++.|...|.+
T Consensus         2 ~~~v~~L~~mFP---------~~~~~~I~~~L~~~~~~ve~ai~~LL~   40 (42)
T PF02845_consen    2 EEMVQQLQEMFP---------DLDREVIEAVLQANNGDVEAAIDALLE   40 (42)
T ss_dssp             HHHHHHHHHHSS---------SS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            356677776652         368899999999999 99999998754

CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.

>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)

Probab=88.03  E-value=2.1  Score=25.04  Aligned_cols=37  Identities=22%  Similarity=0.364  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483         48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL   93 (233)
Q Consensus        48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~   93 (233)
                      .+.+++|++++.         ..++..+.+.|+.++ |++.|.+.|.
T Consensus         3 ~~~v~~L~~mFP---------~l~~~~I~~~L~~~~g~ve~~i~~LL   40 (43)
T smart00546        3 DEALHDLKDMFP---------NLDEEVIKAVLEANNGNVEATINNLL   40 (43)
T ss_pred             HHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence            345666666642         368899999999999 9999998875

CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)

>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A

Probab=82.77  E-value=5.8  Score=23.17  Aligned_cols=34  Identities=18%  Similarity=0.225  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHH
Q psy12483         49 EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAI   92 (233)
Q Consensus        49 ~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l   92 (233)
                      +.|.+|.....          .++.....||..++ |++.|...+
T Consensus         2 e~i~~F~~iTg----------~~~~~A~~~L~~~~wdle~Av~~y   36 (43)
T PF14555_consen    2 EKIAQFMSITG----------ADEDVAIQYLEANNWDLEAAVNAY   36 (43)
T ss_dssp             HHHHHHHHHH-----------SSHHHHHHHHHHTTT-HHHHHHHH
T ss_pred             HHHHHHHHHHC----------cCHHHHHHHHHHcCCCHHHHHHHH
Confidence            45556655542          36789999999999 999998865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	233
1aua_A	296	Phosphatidylinositol Transfer Protein Sec14p From S		9e-10
3q8g_A	320	Resurrection Of A Functional Phosphatidylinositol T		1e-08
3b74_A	320	Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Co		4e-08
4fmm_A	360	Dimeric Sec14 Family Homolog 3 From Saccharomyces C		3e-06

>pdb|1AUA|A Chain A, Phosphatidylinositol Transfer Protein Sec14p From Saccharomyces Cerevisiae Length = 296

Iteration: 1
 Score = 60.1 bits (144), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 95/210 (45%), Gaps = 23/210 (10%)
Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWR 99
            T   ++    + L E  K++ DA  ++  +D +L R+LRA K  V  A +      KWR
Sbjct: 21  GTPGNLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWR 80
Query: 100 VEYDVASLT-----DQNPIIKSHLEKNKARVLKHRDMNGRPVIY--IPARN-HNANDRDI 151
            +Y   ++      D+ P+I     K   +     D +GRPV +  + A N H  N    
Sbjct: 81  KDYGTDTILQDFHYDEKPLIA----KFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTS 136
Query: 152 DE-ITKFIVYCLEE-------ACKKCFEEVVDNLCIVFDLKDFGLSCMDYQM--IKNLIW 201
           +E + K +V+  E        AC +    +V+  C + DLK   +S     M  ++   +
Sbjct: 137 EERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASY 196
Query: 202 LLSRHYPERLGVCLILNSPTLFSGCWTVIR 231
           +   +YPER+G   I+N+P  FS  + + +
Sbjct: 197 ISQNYYPERMGKFYIINAPFGFSTAFRLFK 226

>pdb|3Q8G|A Chain A, Resurrection Of A Functional Phosphatidylinositol Transfer Protein From A Pseudo-Sec14 Scaffold By Directed Evolution Length = 320

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 101/217 (46%), Gaps = 27/217 (12%)
Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWR 99
            T   + +E  + L +   ++ + +  +  +D +L R+LRA K  ++ + +  ++T +WR
Sbjct: 30  GTPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWR 89
Query: 100 VEYDVASLTDQNPIIKSHLEKNKARVLK-------HRDMNGRPVIYIPARNHNANDRDID 152
            EY   ++ +     K   +K + ++ K       H D +GRP+ +  A     N + + 
Sbjct: 90  EEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYF--AELGGINLKKMY 147
Query: 153 EITK--------------FIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQM--I 196
           +IT               F  Y +  AC +    +++  C V DLK   LS   + +  I
Sbjct: 148 KITTEKQMLRNLVKEYELFATYRVP-ACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYI 206
Query: 197 KNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
           K++  +   +YPER+G   I++SP  FS  + +++ +
Sbjct: 207 KDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPF 243

>pdb|3B74|A Chain A, Crystal Structure Of Yeast Sec14 Homolog Sfh1 In Complex With Phosphatidylethanolamine Length = 320

Iteration: 1
 Score = 54.7 bits (130), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/215 (22%), Positives = 99/215 (46%), Gaps = 23/215 (10%)
Query: 41  ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWR 99
            T   + +E  + L +   ++ + +  +  +D +L R+LRA K  ++ + +  ++T +WR
Sbjct: 30  GTPGNLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWR 89
Query: 100 VEYDVASLTDQNPIIKSHLEKNKARVLK-------HRDMNGRPVIYIPARNHNAND---- 148
            EY   ++ +     K   +K + ++ K       H D +GRP+ +      N       
Sbjct: 90  EEYGANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFEELGGINLKKMYKI 149
Query: 149 -------RD-IDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCMDYQM--IKN 198
                  R+ + E   F  Y +  AC +    +++  C V DLK   LS   + +  IK+
Sbjct: 150 TTEKQMLRNLVKEYELFATYRVP-ACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKD 208
Query: 199 LIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
           +  +   +YPER+G   I++SP  FS  + +++ +
Sbjct: 209 VADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPF 243

>pdb|4FMM|A Chain A, Dimeric Sec14 Family Homolog 3 From Saccharomyces Cerevisiae Presents Some Novel Features Of Structure That Lead To A Surprising "dimer- Monomer" State Change Induced By Substrate Binding Length = 360

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 47/171 (27%), Positives = 78/171 (45%), Gaps = 24/171 (14%)
Query: 77  RYLRAFKQV-DPAFQAILKTNKWRVEYDVASLTDQNP------IIKSHLEKNKARVLKHR 129
           RYLRA K V       I  T  WR E+ ++ L +++       ++    E  K  +L + 
Sbjct: 92  RYLRATKWVLKDCIDRITMTLAWRREFGISHLGEEHGDKITADLVAVENESGKQVILGYE 151
Query: 130 DMNGRPVIYI-PARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDF-- 186
           + + RP++Y+ P R    N +      + +V+ LE           D+L ++ D KD+  
Sbjct: 152 N-DARPILYLKPGRQ---NTKTSHRQVQHLVFMLERVID-FMPAGQDSLALLIDFKDYPD 206
Query: 187 -----GLSCMDYQMI-KNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIR 231
                G S +    + K ++ +L  HYPERLG  L+ N P L    WT ++
Sbjct: 207 VPKVPGNSKIPPIGVGKEVLHILQTHYPERLGKALLTNIPWL---AWTFLK 254

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	233
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	5e-44
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	2e-43
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	2e-32
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	2e-29
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	4e-29
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	1e-05
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	2e-05

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A* Length = 320

 Score =  149 bits (377), Expect = 5e-44
 Identities = 46/210 (21%), Positives = 96/210 (45%), Gaps = 21/210 (10%)

Query: 45  EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD 103
            + +E  + L +   ++ + +  +  +D +L R+LRA K  ++ + +  ++T +WR EY 
Sbjct: 34  NLTKEQEEALLQFRSILLEKNYKERLDDSTLLRFLRARKFDINASVEMFVETERWREEYG 93

Query: 104 VASLTDQNPIIKSHLEKNKARVLK-------HRDMNGRPVIYIPARNHNANDR----DID 152
             ++ +     K   +K + ++ K       H D +GRP+ +      N           
Sbjct: 94  ANTIIEDYENNKEAEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEK 153

Query: 153 EITKFIVYCLE-------EACKKCFEEVVDNLCIVFDLKDFGLSCMDY--QMIKNLIWLL 203
           ++ + +V   E        AC +    +++  C V DLK   LS   +    IK++  + 
Sbjct: 154 QMLRNLVKEYELFATYRVPACSRRAGYLIETSCTVLDLKGISLSNAYHVLSYIKDVADIS 213

Query: 204 SRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
             +YPER+G   I++SP  FS  + +++ +
Sbjct: 214 QNYYPERMGKFYIIHSPFGFSTMFKMVKPF 243

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1 Length = 296

 Score =  147 bits (372), Expect = 2e-43
 Identities = 48/204 (23%), Positives = 90/204 (44%), Gaps = 15/204 (7%)

Query: 45  EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD 103
            ++    + L E  K++ DA  ++  +D +L R+LRA K  V  A +      KWR +Y 
Sbjct: 25  NLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84

Query: 104 VASLT-DQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDR----DIDEITKFI 158
             ++  D +   K  + K   +     D +GRPV +      N ++       + + K +
Sbjct: 85  TDTILQDFHYDEKPLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNL 144

Query: 159 VYCLE-------EACKKCFEEVVDNLCIVFDLKDFGLSCMD--YQMIKNLIWLLSRHYPE 209
           V+  E        AC +    +V+  C + DLK   +S        ++   ++   +YPE
Sbjct: 145 VWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGISISSAYSVMSYVREASYISQNYYPE 204

Query: 210 RLGVCLILNSPTLFSGCWTVIRGW 233
           R+G   I+N+P  FS  + + + +
Sbjct: 205 RMGKFYIINAPFGFSTAFRLFKPF 228

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E* Length = 403

 Score =  120 bits (302), Expect = 2e-32
 Identities = 36/203 (17%), Positives = 85/203 (41%), Gaps = 18/203 (8%)

Query: 45  EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD 103
              +E   K +E ++ +  A P    +D+ L R+LRA    +  +   + K  ++R + D
Sbjct: 10  PRQKEALAKFRENVQDVLPALP--NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKD 67

Query: 104 VASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDR----DIDEITKFIV 159
           + ++    P     +++  +  +   D++G PV Y      +A          ++ +  +
Sbjct: 68  IDNIISWQP--PEVIQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKM 125

Query: 160 YCLEEACKKCFEEV------VDNLCIVFDLKDFGLSCMDY---QMIKNLIWLLSRHYPER 210
              E   ++C  +       V+ + I++D +  GL  +     +     + +   +YPE 
Sbjct: 126 RECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPET 185

Query: 211 LGVCLILNSPTLFSGCWTVIRGW 233
           L    ++ +P LF   + +I+ +
Sbjct: 186 LKRLFVVKAPKLFPVAYNLIKPF 208

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A* Length = 262

 Score =  110 bits (276), Expect = 2e-29
 Identities = 36/190 (18%), Positives = 76/190 (40%), Gaps = 5/190 (2%)

Query: 48  EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVAS 106
           +     L+ R +            D  L R+LRA    +D A++ +    KWR E    S
Sbjct: 9   QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEIS 68

Query: 107 LTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEAC 166
                  I   L+     VL+ RD  G  V+     + +       ++ +  +   E   
Sbjct: 69  ADLHPRSIIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIV 128

Query: 167 KKCFEEVVDNLCIVFDLKDFGLS---CMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLF 223
           ++  E   + +  +FDL+ +  S    +   + K +  +L+  +P ++    ++N P +F
Sbjct: 129 QEV-ETQRNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIF 187

Query: 224 SGCWTVIRGW 233
              +++I+ +
Sbjct: 188 HAVFSMIKPF 197

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A* Length = 316

 Score =  110 bits (276), Expect = 4e-29
 Identities = 39/202 (19%), Positives = 87/202 (43%), Gaps = 14/202 (6%)

Query: 45  EVNEEDFQKLKERMK---------MISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK 94
           E  EE  ++L+E ++          ++ A+ +Q  +     R++RA K  V  A++ +  
Sbjct: 56  ETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRG 115

Query: 95  TNKWRVEYDVASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEI 154
              +R++Y     +     ++  +E     VL  RD  GR V+     N  + +   DEI
Sbjct: 116 YVNFRLQYPELFDSLSPEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEI 175

Query: 155 TKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLS---CMDYQMIKNLIWLLSRHYPERL 211
            +   + LE+  +   E  ++  CI+ + K F +     +    ++ ++ +L   +P   
Sbjct: 176 LQAYCFILEKLLENE-ETQINGFCIIENFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWF 234

Query: 212 GVCLILNSPTLFSGCWTVIRGW 233
                ++ P  F+  + V++ +
Sbjct: 235 KAIHFIHQPWYFTTTYNVVKPF 256

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A* Length = 256

 Score = 43.8 bits (103), Expect = 2e-05
 Identities = 17/116 (14%), Positives = 30/116 (25%), Gaps = 8/116 (6%)

Query: 116 SHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVD 175
             L+             G P+ Y  AR       + D +   ++  L+    K +     
Sbjct: 5   KALKTLSIFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYYAKPY----- 59

Query: 176 NLCIVFDLKDFGLSCM-DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVI 230
              IV DL   G S       +     +      + +    I N  +         
Sbjct: 60  --EIVVDLTHTGPSNRFKTDFLSKWFVVFPGFAYDNVSAVYIYNCNSWVREYTKYH 113

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	233
3hx3_A	316	Retinaldehyde-binding protein 1; lipid transfer pr	100.0
1r5l_A	262	Alpha-TTP, protein (alpha-tocopherol transfer prot	100.0
1aua_A	296	Phosphatidylinositol transfer protein SEC14P; phos	100.0
3q8g_A	320	CRAL-TRIO domain-containing protein YKL091C; strin	100.0
1olm_A	403	SEC14-like protein 2; lipid-binding protein, chole	100.0
3pg7_A	256	Neurofibromin; SEC lipid binding domain, PH domain	98.84
3peg_A	290	Neurofibromin; SEC14 domain, pleckstrin homology d	98.83
1vej_A	74	Riken cDNA 4931431F19; UBA domain, three helix bun	94.58
1wgl_A	59	TOLL-interacting protein; CUE domain, structural g	92.53
2dhy_A	67	CUE domain-containing protein 1; structural genomi	91.22
2dah_A	54	Ubiquilin-3; UBA domain, structural genomics, NPPS	85.95
2dna_A	67	Unnamed protein product; ubiquitin associated doma	85.22
1wr1_B	58	Ubiquitin-like protein DSK2; UBA domain, UBA-ubiqu	83.92
2di0_A	71	Activating signal cointegrator 1 complex subunit 2	82.98
2bwb_A	46	Ubiquitin-like protein DSK2; UBA, signaling protei	80.97
1otr_A	49	Protein CUE2; protein-protein complex, cell cycle;	80.94

>3hx3_A Retinaldehyde-binding protein 1; lipid transfer protein, 11-CIS-retinal, bothnia dystrophy, acetylation, cytoplasm, disease mutation; HET: RET; 1.69A {Homo sapiens} PDB: 3hy5_A*

Probab=100.00  E-value=3.7e-41  Score=287.50  Aligned_cols=197  Identities=20%  Similarity=0.369  Sum_probs=166.3

Q ss_pred             ecccCCCCCCccccHHHHHHHHHHHHhhhCCCC---------CCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcC
Q psy12483         34 RIEMGDQATAAEVNEEDFQKLKERMKMISDADP---------LQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD  103 (233)
Q Consensus        34 ~~~~~~~~~~~~~~~~~i~~lr~~l~~~~~~~~---------~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~  103 (233)
                      ..|..+++|+++..+++|++||+|++++++..+         ....||.+|+||||+++ |+++|.++|.++++||++++
T Consensus        45 ~~a~~eL~E~~~~~~~~l~~LR~wi~~~p~l~~~l~~~~~~~~~~~dD~~LlRFLRarkfdv~kA~~~L~~~l~wR~~~~  124 (316)
T 3hx3_A           45 QKAKDELNEREETREEAVRELQEMVQAQAASGEELAVAVAERVQEKDSGFFLRFIRARKFNVGRAYELLRGYVNFRLQYP  124 (316)
T ss_dssp             -----------CHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHTTTCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCG
T ss_pred             HHHHHHhCCChHHHHHHHHHHHHHHHhCCCccccccccccccCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCc
Confidence            347788999999999999999999999875210         13579999999999999 99999999999999999987


Q ss_pred             C--CCccCCchHHHHHHHhcCceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEE
Q psy12483        104 V--ASLTDQNPIIKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVF  181 (233)
Q Consensus       104 ~--~~l~~~~~~~~~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~  181 (233)
                      .  +++.  .+++.+.++.|++++++|+|++||||++++++.++++..+.++++|++++++|.++.. .+.+++|+++|+
T Consensus       125 ~~~~~~~--~~~i~~~l~~g~~~~l~g~Dk~GrpVii~r~g~~d~~~~~~~~~~r~~~~~lE~~l~~-~~~~v~g~v~Ii  201 (316)
T 3hx3_A          125 ELFDSLS--PEAVRCTIEAGYPGVLSSRDKYGRVVMLFNIENWQSQEITFDEILQAYCFILEKLLEN-EETQINGFCIIE  201 (316)
T ss_dssp             GGTTTCC--HHHHHHHHHTTSSEECSSCCTTSCEEEEEECTTCCTTTSCHHHHHHHHHHHHHHHTTS-HHHHHHCEEEEE
T ss_pred             hhhcCCC--HHHHHHHHHcCCccccCCCCCCCCEEEEEecccCCCCCCCHHHHHHHHHHHHHHHHhc-ccCCcceEEEEE
Confidence            4  2332  3467788899998889999999999999999999999999999999999999998753 356789999999


Q ss_pred             ecCCCCCCCC---CHHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        182 DLKDFGLSCM---DYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       182 D~~g~~~~~~---~~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      |++|+|++|+   +++.+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus       202 D~~g~sl~~~~~~~~~~~k~~~~~lq~~YPerL~~i~iiN~P~~f~~i~~ivkpf  256 (316)
T 3hx3_A          202 NFKGFTMQQAASLRTSDLRKMVDMLQDSFPAWFKAIHFIHQPWYFTTTYNVVKPF  256 (316)
T ss_dssp             ECTTCCHHHHHHCCHHHHHHHHHHHHTTSTTTEEEEEEESCCTTHHHHHHHHGGG
T ss_pred             ECCCCCHHHhccCChHHHHHHHHHHHHhhhhhhceEEEEeCCHHHHHHHHHHHHh
Confidence            9999999874   788999999999999999999999999999999999999997

>1r5l_A Alpha-TTP, protein (alpha-tocopherol transfer protein); ataxia with vitamin E deficiency, transport protein; HET: MSE VIV; 1.50A {Homo sapiens} SCOP: a.5.3.1 c.13.1.1 PDB: 1oiz_A* 1oip_A*

Probab=100.00  E-value=1.4e-40  Score=276.81  Aligned_cols=190  Identities=19%  Similarity=0.290  Sum_probs=161.7

Q ss_pred             CCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCC--CCccCCchHHHHH
Q psy12483         41 ATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDV--ASLTDQNPIIKSH  117 (233)
Q Consensus        41 ~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~--~~l~~~~~~~~~~  117 (233)
                      +++++.++++|++||+++++...+..+...||.+|+||||+++ |+++|.++|+++++||++++.  .++.  .+++.+.
T Consensus         2 ~~ls~~~~~~l~~lr~~l~~~~~~~~~~~~dd~~LlRFLra~k~dv~~A~~~l~~~l~wR~~~~~i~~~~~--~~~~~~~   79 (262)
T 1r5l_A            2 SHMSPLLQPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPEISADLH--PRSIIGL   79 (262)
T ss_dssp             -------CTTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHHHHSCCC--GGGTHHH
T ss_pred             CCccHHHHHHHHHHHHHHHhCCcccCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhChHhhhcCC--hHHHHHH
Confidence            3677888899999999999875433235689999999999999 999999999999999999862  2232  2357778


Q ss_pred             HHhcCceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC---CHH
Q psy12483        118 LEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM---DYQ  194 (233)
Q Consensus       118 ~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~---~~~  194 (233)
                      ++.|+..+++|+|++||||++++++.++++.++.++++|++++++|.++.. .+.++.|+++|+|++|+|++|+   +++
T Consensus        80 ~~~g~~~~l~g~D~~GrpV~i~~~~~~d~~~~~~~~~~r~~~~~~E~~~~~-~~~~~~g~~~I~D~~g~s~~~~~~~~~~  158 (262)
T 1r5l_A           80 LKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQE-VETQRNGIKAIFDLEGWQFSHAFQITPS  158 (262)
T ss_dssp             HHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTS-HHHHHHCEEEEEECTTCCHHHHHHCCHH
T ss_pred             HHcCCccCCCCcCCCCCEEEEEeccccCcccCCHHHHHHHHHHHHHHHHhC-hhhcccceEEEEECCCCCHHHHhccCHH
Confidence            888988888999999999999999999999899999999999999987643 3456789999999999999886   689


Q ss_pred             HHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        195 MIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       195 ~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      .+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus       159 ~~k~~~~~~q~~yPerl~~i~ivN~P~~f~~~~~~vkpf  197 (262)
T 1r5l_A          159 VAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPF  197 (262)
T ss_dssp             HHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGG
T ss_pred             HHHHHHHHHHhhCChhhceEEEEeCCHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999997

>1aua_A Phosphatidylinositol transfer protein SEC14P; phospholipid-binding protein, peripheral golgi membrane protein, phospholipid exchange; HET: BOG; 2.50A {Saccharomyces cerevisiae} SCOP: a.5.3.1 c.13.1.1

Probab=100.00  E-value=4.9e-39  Score=272.17  Aligned_cols=193  Identities=22%  Similarity=0.379  Sum_probs=162.9

Q ss_pred             CCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCccCC-chHHH
Q psy12483         38 GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLTDQ-NPIIK  115 (233)
Q Consensus        38 ~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~~~-~~~~~  115 (233)
                      +.++++++.++++|++||+|+++.+  + ....||.+|+||||+++ |+++|.++|+++++||++++++++..+ ++.-.
T Consensus        21 ~~~~~l~~~q~~~l~~lr~~l~~~~--~-~~~~dd~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~   97 (296)
T 1aua_A           21 GTPGNLDSAQEKALAELRKLLEDAG--F-IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTILQDFHYDEK   97 (296)
T ss_dssp             TSTTTCCTTHHHHHHHHHHHHHHTT--C-CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHCCCTTH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcC--C-CCCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCcchhhhccccCcH
Confidence            3456788899999999999999865  2 35689999999999999 999999999999999999987766432 11112


Q ss_pred             HHHHhcCceEecccCCCCCeEEEEeCCCcCCC----CCCHHHHHHHHHHHHHHHHHhh-------ccCCcccEEEEEecC
Q psy12483        116 SHLEKNKARVLKHRDMNGRPVIYIPARNHNAN----DRDIDEITKFIVYCLEEACKKC-------FEEVVDNLCIVFDLK  184 (233)
Q Consensus       116 ~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~----~~~~~~~~r~~~~~lE~~~~~~-------~~~~~~~~v~I~D~~  184 (233)
                      ..+...++.+++|+|++||||+|++++.++++    ..+.+++++++++.+|.+++..       .+.+++++++|+|++
T Consensus        98 ~~~~~~~~~~~~g~Dk~GrpV~i~~~g~~d~~~~~~~~~~~~~~~~~~~~~E~~~~~~~~~~s~~~g~~v~~~~~I~D~~  177 (296)
T 1aua_A           98 PLIAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLK  177 (296)
T ss_dssp             HHHGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECT
T ss_pred             HHHHHhCCceecccCCCCCEEEEEeeccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceeEEEEEECC
Confidence            34455556667899999999999999988754    3588999999999999876532       234689999999999


Q ss_pred             CCCCCCCC--HHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        185 DFGLSCMD--YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       185 g~~~~~~~--~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      |++++|++  ++.+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus       178 g~s~~~~~~~~~~~k~~~~~~q~~YPerl~~i~iiN~P~~f~~~~~iikpf  228 (296)
T 1aua_A          178 GISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF  228 (296)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGG
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhHHHhhCeEEEECchHHHHHHHHHHHhh
Confidence            99999886  68899999999999999999999999999999999999997

>3q8g_A CRAL-TRIO domain-containing protein YKL091C; string motif, signaling protein, directed evoluti SEC14, phospholipid transporter, lipid; HET: PEE; 1.80A {Saccharomyces cerevisiae} PDB: 3b7n_A* 3b74_A* 3b7q_A* 3b7z_A*

Probab=100.00  E-value=7.3e-39  Score=273.50  Aligned_cols=193  Identities=23%  Similarity=0.376  Sum_probs=164.1

Q ss_pred             CCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCccCCc-hH--
Q psy12483         38 GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLTDQN-PI--  113 (233)
Q Consensus        38 ~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~~~~-~~--  113 (233)
                      +.+++++++++++|++||+|+++.+  .+ ...||.+|+||||+++ |+++|.++|+++++||++++++++..+. +.  
T Consensus        30 g~~~~lt~~q~~~l~~lR~~l~~~~--~~-~~~dD~~LLRFLRArkfdv~kA~~mL~~~l~WRk~~~vd~i~~~~~~~~~  106 (320)
T 3q8g_A           30 GTPGNLTKEQEEALLQFRSILLEKN--YK-ERLDDSTLLRFLRARKFDINASVEMFVETERWREEYGANTIIEDYENNKE  106 (320)
T ss_dssp             TSTTCCCHHHHHHHHHHHHHHHHTT--CC-SSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHHHHHHHTHH
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhcC--CC-CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCccccccccccccc
Confidence            4567899999999999999999875  23 4689999999999999 9999999999999999999987765321 11  


Q ss_pred             ----HHHHHHhcCceEecccCCCCCeEEEEeCCCcCCCC----CCHHHHHHHHHHHHHHHHHh-------hccCCcccEE
Q psy12483        114 ----IKSHLEKNKARVLKHRDMNGRPVIYIPARNHNAND----RDIDEITKFIVYCLEEACKK-------CFEEVVDNLC  178 (233)
Q Consensus       114 ----~~~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~----~~~~~~~r~~~~~lE~~~~~-------~~~~~~~~~v  178 (233)
                          -...+...++.+++|+|++||||+|+++|.++++.    .+.+++++++++.+|.+++.       ..+..+++++
T Consensus       107 ~~~~e~~~~~~~~~~~~~g~Dk~GRpV~i~r~g~~d~~~l~~~~~~~~~lr~lv~~~E~~~~~~l~~~s~~~G~~ve~~~  186 (320)
T 3q8g_A          107 AEDKERIKLAKMYPQYYHHVDKDGRPLYFAELGGINLKKMYKITTEKQMLRNLVKEYELFATYRVPACSRRAGYLIETSC  186 (320)
T ss_dssp             HHHHHHHHHHTTSCEEEEEECTTCCEEEEEECTTCCHHHHHHHCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEE
T ss_pred             cchhHHHHHHHhCCceecCCCCCcCEEEEEeccccCHHHhhccCCHHHHHHHHHHHHHHHHHHhhhHHHHhcCCCcceeE
Confidence                12344555667789999999999999999988754    47889999999999987642       1233578999


Q ss_pred             EEEecCCCCCCCCC--HHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        179 IVFDLKDFGLSCMD--YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       179 ~I~D~~g~~~~~~~--~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      +|+|++|+|+++++  ++.+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus       187 ~IiD~~g~sl~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~~~~~ikpf  243 (320)
T 3q8g_A          187 TVLDLKGISLSNAYHVLSYIKDVADISQNYYPERMGKFYIIHSPFGFSTMFKMVKPF  243 (320)
T ss_dssp             EEEECTTCCHHHHHHTHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHTTTGGG
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHHHHHhhCchhhceEEEECCCHHHHHHHHHHHHh
Confidence            99999999999875  68899999999999999999999999999999999999997

>1olm_A SEC14-like protein 2; lipid-binding protein, cholesterol biosynthesis, oxidized vitamin E, lipid-binding, transport, transcription regulation; HET: VTQ; 1.95A {Homo sapiens} SCOP: a.5.3.1 b.132.1.1 c.13.1.1 PDB: 1o6u_A* 1olm_E*

Probab=100.00  E-value=1.3e-37  Score=274.01  Aligned_cols=191  Identities=20%  Similarity=0.361  Sum_probs=162.7

Q ss_pred             CCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCccC-CchHHH
Q psy12483         38 GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLTD-QNPIIK  115 (233)
Q Consensus        38 ~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~~-~~~~~~  115 (233)
                      |.++++++.+++++++||+|+++.....+  ..||.+|+|||||++ |+++|.++|+++++||++++++.+.. ..++..
T Consensus         3 g~~~~l~~~q~~~l~~lr~~l~~~~~~l~--~~dD~~LlRFLrarkfdv~~A~~~l~~~l~wR~~~~~~~i~~~~~~~~~   80 (403)
T 1olm_A            3 GRVGDLSPRQKEALAKFRENVQDVLPALP--NPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNIISWQPPEVI   80 (403)
T ss_dssp             SBTTBCCHHHHHHHHHHHHHHGGGGGGSS--CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGGGSCCCHHH
T ss_pred             CCccCCCHHHHHHHHHHHHHHHhhccCCC--CCChhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCCcccccCCHHHH
Confidence            45678999999999999999998642222  579999999999999 99999999999999999998876643 223333


Q ss_pred             HHHHhcCceEecccCCCCCeEEEEeCCCcCCC----CCCHHHHHHHHHHHHHHHHHhhcc------CCcccEEEEEecCC
Q psy12483        116 SHLEKNKARVLKHRDMNGRPVIYIPARNHNAN----DRDIDEITKFIVYCLEEACKKCFE------EVVDNLCIVFDLKD  185 (233)
Q Consensus       116 ~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~----~~~~~~~~r~~~~~lE~~~~~~~~------~~~~~~v~I~D~~g  185 (233)
                      +.+.   ...++|+|++||||+|++++.++++    ..+.++++|++++++|.++..+..      .+++|+++|+|++|
T Consensus        81 ~~~~---~~~~~g~Dk~GrpV~~~~~g~~d~~~l~~~~~~~~~~r~~~~~~E~~~~~~~~~s~~~g~~v~~~~~I~D~~g  157 (403)
T 1olm_A           81 QQYL---SGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEG  157 (403)
T ss_dssp             HHHC---CBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTT
T ss_pred             HHhC---CceeeccCCCcCEEEEEecCCCChHHhhccCCHHHHHHHHHHHHHHHHHHHHhhHHhhCCcccceEEEEECCC
Confidence            3332   2235799999999999999998875    479999999999999998876532      25899999999999


Q ss_pred             CCCCCCC---HHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        186 FGLSCMD---YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       186 ~~~~~~~---~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      +++++++   ++.+|.+++++|++||+|++++||||+|++|+++|+++|||
T Consensus       158 ~sl~~~~~~~~~~~k~~~~~lq~~YPerl~~i~iiN~P~~f~~i~~~ikpf  208 (403)
T 1olm_A          158 LGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPF  208 (403)
T ss_dssp             CCGGGGCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGG
T ss_pred             CCHHHHhhHHHHHHHHHHHHHHhhCcHhhCeEEEEeCCHHHHHHHHHHHhh
Confidence            9999984   57889999999999999999999999999999999999997

>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*

Probab=98.84  E-value=2.3e-09  Score=88.13  Aligned_cols=99  Identities=15%  Similarity=0.172  Sum_probs=79.9

Q ss_pred             ceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCCC-CHHHHHHHHH
Q psy12483        123 ARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSCM-DYQMIKNLIW  201 (233)
Q Consensus       123 ~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~~-~~~~~k~~~~  201 (233)
                      +++-.|.|++||||+++..++.++...+.+.++.+++..++...       ...+.+|+|.+|++..+. +.++++.+.+
T Consensus        12 ify~~G~d~dGrpViv~~~~~l~~~~~D~e~Ll~~vl~tl~~~~-------~~~y~lV~d~T~~~~~n~p~~~wl~~~~~   84 (256)
T 3pg7_A           12 IFYQAGTSKAGNPIFYYVARRFKTGQINGDLLIYHVLLTLKPYY-------AKPYEIVVDLTHTGPSNRFKTDFLSKWFV   84 (256)
T ss_dssp             SEEEEEECTTSCEEEEEEGGGCCBTTBCHHHHHHHHHHHHTTTT-------TSCEEEEEECTTCCGGGCCCHHHHHHTTT
T ss_pred             CEEEcCcCCCCCEEEEEEeecCCCCCCCHHHHHHHHHHHHHHhc-------CCCeEEEEECCCCCcccCCcHHHHHHHHH
Confidence            45566999999999999999888777777766555444444221       357999999999998655 6889999999


Q ss_pred             HHhchhhhccCcEEEEcCCcccHHHhh
Q psy12483        202 LLSRHYPERLGVCLILNSPTLFSGCWT  228 (233)
Q Consensus       202 ~~q~~yP~rl~~i~ivN~p~~~~~~~~  228 (233)
                      ++...|...|+++||+|++++|...|.
T Consensus        85 llp~~~~kNlk~~Yivnpt~~~k~~~~  111 (256)
T 3pg7_A           85 VFPGFAYDNVSAVYIYNCNSWVREYTK  111 (256)
T ss_dssp             SSCHHHHHTEEEEEEESCCHHHHHHHH
T ss_pred             HcCHHHHhcccEEEEECCCHHHHHHHH
Confidence            999999999999999999999985543

>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1

Probab=94.58  E-value=0.25  Score=32.04  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=28.8

Q ss_pred             cHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483         47 NEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL   93 (233)
Q Consensus        47 ~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~   93 (233)
                      -+++|++|+++          .+.++.-.++-|++++ |+++|.+.|.
T Consensus        29 ye~qi~qL~eM----------GF~dr~~~~~AL~~t~Gnve~Ave~L~   66 (74)
T 1vej_A           29 YQQELEELKAL----------GFANRDANLQALVATDGDIHAAIEMLL   66 (74)
T ss_dssp             SHHHHHHHHHH----------TCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHc----------CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence            35677777766          2456677899999999 9999998775

>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=92.53  E-value=0.36  Score=29.81  Aligned_cols=43  Identities=19%  Similarity=0.371  Sum_probs=35.2

Q ss_pred             CccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483         43 AAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK   94 (233)
Q Consensus        43 ~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~   94 (233)
                      ..+..++++++|++++.         .++...+..-|++++ |++.|+..|.+
T Consensus         5 ~~~~~ee~l~~L~emFP---------~ld~~~I~~vL~a~~gdvd~aI~~LL~   48 (59)
T 1wgl_A            5 SSGCSEEDLKAIQDMFP---------NMDQEVIRSVLEAQRGNKDAAINSLLQ   48 (59)
T ss_dssp             SSSSCHHHHHHHHHHCS---------SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence            34556788888888852         468899999999999 99999998864

>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.22  E-value=1.2  Score=28.25  Aligned_cols=42  Identities=17%  Similarity=0.155  Sum_probs=33.8

Q ss_pred             cccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483         45 EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT   95 (233)
Q Consensus        45 ~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~   95 (233)
                      ...++++++|++++.         .++...+..-|++++ |++.|++.|.+.
T Consensus        16 ~~~~~~v~~L~~MFP---------~lD~~vI~~vL~a~~G~vd~aId~LL~m   58 (67)
T 2dhy_A           16 LEFNQAMDDFKTMFP---------NMDYDIIECVLRANSGAVDATIDQLLQM   58 (67)
T ss_dssp             CCSHHHHHHHHHHCS---------SSCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            345677888888852         368899999999999 999999988754

>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1

Probab=85.95  E-value=3.9  Score=24.54  Aligned_cols=38  Identities=18%  Similarity=0.226  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483         48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT   95 (233)
Q Consensus        48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~   95 (233)
                      +++|++|+++          .+.++.-.++-|+.++ |+++|.+.|...
T Consensus        10 ~~~l~~L~~M----------GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~   48 (54)
T 2dah_A           10 QVQLEQLRSM----------GFLNREANLQALIATGGDVDAAVEKLRQS   48 (54)
T ss_dssp             HHHHHHHHHH----------TCCCHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHc----------CCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence            5677777766          2445566799999999 999999988653

>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1

Probab=85.22  E-value=3  Score=26.31  Aligned_cols=37  Identities=14%  Similarity=0.106  Sum_probs=27.9

Q ss_pred             HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483         48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK   94 (233)
Q Consensus        48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~   94 (233)
                      .++|++|+++          .+.++...++-|++++ |+++|++.|..
T Consensus        20 ~~ql~qL~~M----------GF~d~~an~~AL~at~Gnve~Ave~L~~   57 (67)
T 2dna_A           20 SKEMECLQAM----------GFVNYNANLQALIATDGDTNAAIYKLKS   57 (67)
T ss_dssp             HHHHHHHHHH----------TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHc----------CCCcHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            3466666654          3456777799999999 99999998764

>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1

Probab=83.92  E-value=2.9  Score=25.53  Aligned_cols=37  Identities=19%  Similarity=0.239  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483         48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK   94 (233)
Q Consensus        48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~   94 (233)
                      +++|++|+++          .+.++...++-|++++ |+++|.+.|..
T Consensus        18 ~~qi~~L~~M----------GF~d~~~~~~AL~~~~gnve~Ave~L~~   55 (58)
T 1wr1_B           18 EHQLRQLNDM----------GFFDFDRNVAALRRSGGSVQGALDSLLN   55 (58)
T ss_dssp             HHHHHHHHHH----------TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHHc----------CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence            4456666654          2456777799999999 99999998764

>2di0_A Activating signal cointegrator 1 complex subunit 2; ASCC2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.4

Probab=82.98  E-value=4.3  Score=25.86  Aligned_cols=40  Identities=13%  Similarity=0.192  Sum_probs=31.1

Q ss_pred             ccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483         46 VNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK   94 (233)
Q Consensus        46 ~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~   94 (233)
                      .-...|.++++.+       |  .+.+.++.+.|..++ |+|.+...|-+
T Consensus        12 ~l~s~I~qV~DLf-------P--dLG~gfi~~~L~~y~~nvE~vin~LLE   52 (71)
T 2di0_A           12 ELDSLISQVKDLL-------P--DLGEGFILACLEYYHYDPEQVINNILE   52 (71)
T ss_dssp             HHHHHHHHHHHHC-------C--SSCHHHHHHHHHHTTTCHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc-------c--cCCHHHHHHHHHHhCCCHHHHHHHHHc
Confidence            3445666666664       2  478999999999999 99999998864

>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A

Probab=80.97  E-value=3.8  Score=23.67  Aligned_cols=25  Identities=20%  Similarity=0.146  Sum_probs=20.7

Q ss_pred             CCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483         69 YHNDFSLKRYLRAFK-QVDPAFQAIL   93 (233)
Q Consensus        69 ~~~D~~llRfLr~~~-dv~~A~~~l~   93 (233)
                      +.++.-.++-|++++ |+++|.+.|-
T Consensus        19 F~d~~~~~~AL~~~~gnv~~Ave~L~   44 (46)
T 2bwb_A           19 FFDFDRNVAALRRSGGSVQGALDSLL   44 (46)
T ss_dssp             CCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence            446677799999999 9999998764

>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4

Probab=80.94  E-value=4.6  Score=23.72  Aligned_cols=39  Identities=18%  Similarity=0.160  Sum_probs=29.9

Q ss_pred             HHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483         48 EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT   95 (233)
Q Consensus        48 ~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~   95 (233)
                      +++++.|.+++.         .++-..+..-|..++ |+++|.+.|.+.
T Consensus         5 e~~v~~L~EMFP---------~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~   44 (49)
T 1otr_A            5 ESKLSILMDMFP---------AISKSKLQVHLLENNNDLDLTIGLLLKE   44 (49)
T ss_dssp             HHHHHHHHHHCS---------SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            456666666642         357788999999999 999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	233
d1r5la2	185	c.13.1.1 (A:91-275) Alpha-tocopherol transfer prot	4e-22
d1auaa2	203	c.13.1.1 (A:97-299) C-terminal domain of phosphati	3e-17
d1olma3	199	c.13.1.1 (A:76-274) Supernatant protein factor (SP	2e-15
d1auaa1	93	a.5.3.1 (A:4-96) N-terminal domain of phosphatidyl	2e-09
d1olma1	75	a.5.3.1 (A:1-75) Supernatant protein factor (SPF),	7e-08
d1r5la1	66	a.5.3.1 (A:25-90) Alpha-tocopherol transfer protei	4e-04

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 185

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 87.4 bits (216), Expect = 4e-22
 Identities = 21/123 (17%), Positives = 53/123 (43%), Gaps = 4/123 (3%)

Query: 114 IKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEV 173
           I   L+     VL+ RD  G  V+     + +       ++ +  +   E   ++  E  
Sbjct: 2   IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQEV-ETQ 60

Query: 174 VDNLCIVFDLKDFGLS---CMDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVI 230
            + +  +FDL+ +  S    +   + K +  +L+  +P ++    ++N P +F   +++I
Sbjct: 61  RNGIKAIFDLEGWQFSHAFQITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMI 120

Query: 231 RGW 233
           + +
Sbjct: 121 KPF 123

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 74.8 bits (183), Expect = 3e-17
 Identities = 25/119 (21%), Positives = 50/119 (42%), Gaps = 13/119 (10%)

Query: 128 HRDMNGRPVIYIPARNHNAND----RDIDEITKFIVYCLEEACKKCFEE-------VVDN 176
             D +GRPV +      N ++       + + K +V+  E   +            +V+ 
Sbjct: 17  KTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVET 76

Query: 177 LCIVFDLKDFGLSCMD--YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW 233
            C + DLK   +S        ++   ++   +YPER+G   I+N+P  FS  + + + +
Sbjct: 77  SCTIMDLKGISISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF 135

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]} Length = 199

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.7 bits (170), Expect = 2e-15
 Identities = 21/129 (16%), Positives = 53/129 (41%), Gaps = 13/129 (10%)

Query: 118 LEKNKARVLKHRDMNGRPVIYIPARNHNANDR----DIDEITKFIVYCLEEACKKCFEE- 172
           +++  +  +   D++G PV Y      +A          ++ +  +   E   ++C  + 
Sbjct: 5   IQQYLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQT 64

Query: 173 -----VVDNLCIVFDLKDFGLSCMDY---QMIKNLIWLLSRHYPERLGVCLILNSPTLFS 224
                 V+ + I++D +  GL  +     +     + +   +YPE L    ++ +P LF 
Sbjct: 65  TKLGRKVETITIIYDCEGLGLKHLWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFP 124

Query: 225 GCWTVIRGW 233
             + +I+ +
Sbjct: 125 VAYNLIKPF 133

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.3 bits (123), Expect = 2e-09
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 1/66 (1%)

Query: 45  EVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYD 103
            ++    + L E  K++ DA  ++  +D +L R+LRA K  V  A +      KWR +Y 
Sbjct: 25  NLDSAQEKALAELRKLLEDAGFIERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYG 84

Query: 104 VASLTD 109
             ++  
Sbjct: 85  TDTILQ 90

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 75

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.3 bits (110), Expect = 7e-08
 Identities = 12/67 (17%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 45  EVNEEDFQKLKERMKMISDADPLQ-YHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEY 102
           +++    + L +  + + D  P     +D+ L R+LRA    +  +   + K  ++R + 
Sbjct: 7   DLSPRQKEALAKFRENVQDVLPALPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQK 66

Query: 103 DVASLTD 109
           D+ ++  
Sbjct: 67  DIDNIIS 73

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]} Length = 66

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 1/56 (1%)

Query: 48  EEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEY 102
           +     L+ R +            D  L R+LRA    +D A++ +    KWR E 
Sbjct: 1   QPGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAEC 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	233
d1r5la2	185	Alpha-tocopherol transfer protein {Human (Homo sap	99.93
d1olma3	199	Supernatant protein factor (SPF), middle domain {H	99.9
d1auaa2	203	C-terminal domain of phosphatidylinositol transfer	99.88
d1olma1	75	Supernatant protein factor (SPF), N-terminal domai	99.6
d1auaa1	93	N-terminal domain of phosphatidylinositol transfer	99.55
d1r5la1	66	Alpha-tocopherol transfer protein {Human (Homo sap	99.43
d2daha1	41	Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}	92.82
d1wgla_	59	Toll-interacting protein {Human (Homo sapiens) [Ta	91.8
d2dnaa1	50	Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus	91.06
d1veja1	61	4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]	90.26
d2bwba1	44	DSK2 {Baker's yeast (Saccharomyces cerevisiae) [Ta	89.92
d1mn3a_	54	Vacuolar protein sorting-associated protein vps9 {	83.17
d1vg5a_	73	Rhomboid family protein At3g58460 {Thale cress (Ar	80.99

>d1r5la2 c.13.1.1 (A:91-275) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-26  Score=181.65  Aligned_cols=119  Identities=18%  Similarity=0.321  Sum_probs=110.0

Q ss_pred             HHHHHHhcCceEecccCCCCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhhccCCcccEEEEEecCCCCCCC---
Q psy12483        114 IKSHLEKNKARVLKHRDMNGRPVIYIPARNHNANDRDIDEITKFIVYCLEEACKKCFEEVVDNLCIVFDLKDFGLSC---  190 (233)
Q Consensus       114 ~~~~~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~~~~~~~~~r~~~~~lE~~~~~~~~~~~~~~v~I~D~~g~~~~~---  190 (233)
                      +.+.+++|++.++||+|++||||+++++++++++..+.++++|++++.+|.++.. +..+++|+++|+|++|++++|   
T Consensus         2 i~~~l~~g~~~~lp~rD~~Gr~v~~~r~~~~d~~~~~~~~~~r~~~~~~e~~~~~-~~~~~~g~~~I~D~~g~s~~~~~~   80 (185)
T d1r5la2           2 IIGLLKAGYHGVLRSRDPTGSKVLIYRIAHWDPKVFTAYDVFRVSLITSELIVQE-VETQRNGIKAIFDLEGWQFSHAFQ   80 (185)
T ss_dssp             THHHHHTTCEEECSSCCTTCCEEEEEEGGGCCTTTSCHHHHHHHHHHHHHHHTTS-HHHHHHCEEEEEECTTCCHHHHHH
T ss_pred             hHHHHHcCCceecCCCCcCcCEEEEEEcccCCCCCCCHHHHHHHHHHHHHHHHhc-cccCCceEEEEEECCCCCHHHhhh
Confidence            4578899999999999999999999999999999999999999999999987543 456788999999999999987   


Q ss_pred             CCHHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        191 MDYQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       191 ~~~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      ++++.++++++++|++||+|++++||||+|++|+++|+++|||
T Consensus        81 ~~~~~~~~~~~~~q~~yP~rl~~i~ivn~P~~~~~~~~~vk~f  123 (185)
T d1r5la2          81 ITPSVAKKIAAVLTDSFPLKVRGIHLINEPVIFHAVFSMIKPF  123 (185)
T ss_dssp             CCHHHHHHHHHHHHTSSSSCEEEEEEESCCGGGHHHHHHHGGG
T ss_pred             ccHHHHHHHHHHHHhhCchhhheeEEEcCCHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999999999997

>d1olma3 c.13.1.1 (A:76-274) Supernatant protein factor (SPF), middle domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: Supernatant protein factor (SPF), middle domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=2.7e-24  Score=169.85  Aligned_cols=113  Identities=19%  Similarity=0.364  Sum_probs=99.8

Q ss_pred             cCceEecccCCCCCeEEEEeCCCcCCC----CCCHHHHHHHHHHHHHHHHHhhc------cCCcccEEEEEecCCCCCCC
Q psy12483        121 NKARVLKHRDMNGRPVIYIPARNHNAN----DRDIDEITKFIVYCLEEACKKCF------EEVVDNLCIVFDLKDFGLSC  190 (233)
Q Consensus       121 g~~~~l~g~d~~GrpV~~~~~~~~~~~----~~~~~~~~r~~~~~lE~~~~~~~------~~~~~~~v~I~D~~g~~~~~  190 (233)
                      .++..++|+|++||||+++++++++++    ..+.++++++.++.+|.+++.+.      +.+++|+++|+|++|+++++
T Consensus         8 ~~p~~~~G~Dk~Grpv~~~r~g~~d~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~v~~~~~I~Dl~g~s~~~   87 (199)
T d1olma3           8 YLSGGMCGYDLDGCPVWYDIIGPLDAKGLLFSASKQDLLRTKMRECELLLQECAHQTTKLGRKVETITIIYDCEGLGLKH   87 (199)
T ss_dssp             HCCBEEEEECTTSCEEEEEECTTCCHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCEEEEEECTTCCGGG
T ss_pred             HCCCccccCCCCCCEEEEEecccCChHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCccceEEEEEECCCCchhh
Confidence            345567899999999999999998753    45889999999999998876542      35678999999999999999


Q ss_pred             CC---HHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        191 MD---YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       191 ~~---~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      ++   ++.++.++.++|++||+|++++||||+|++|+++|+++|||
T Consensus        88 ~~~~~~~~l~~~~~~~q~~YPerl~~i~iiN~P~~f~~~w~ivk~f  133 (199)
T d1olma3          88 LWKPAVEAYGEFLCMFEENYPETLKRLFVVKAPKLFPVAYNLIKPF  133 (199)
T ss_dssp             GCHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCTTHHHHHHHHGGG
T ss_pred             hccccHHHHHHHHHHHHHHHHHhhhheEEECCCHHHHHHHHHHHHh
Confidence            84   67899999999999999999999999999999999999997

>d1auaa2 c.13.1.1 (A:97-299) C-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: SpoIIaa-like
superfamily: CRAL/TRIO domain
family: CRAL/TRIO domain
domain: C-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.1e-23  Score=165.02  Aligned_cols=116  Identities=22%  Similarity=0.409  Sum_probs=101.0

Q ss_pred             HHhcCceEecccCCCCCeEEEEeCCCcCCC----CCCHHHHHHHHHHHHHHHHHhh-------ccCCcccEEEEEecCCC
Q psy12483        118 LEKNKARVLKHRDMNGRPVIYIPARNHNAN----DRDIDEITKFIVYCLEEACKKC-------FEEVVDNLCIVFDLKDF  186 (233)
Q Consensus       118 ~~~g~~~~l~g~d~~GrpV~~~~~~~~~~~----~~~~~~~~r~~~~~lE~~~~~~-------~~~~~~~~v~I~D~~g~  186 (233)
                      +.+.++.+++|+|++||||+|+++++.++.    ..+.+++++++++.+|.+++..       ....++++++|+|++|+
T Consensus         7 ~~~~~p~~~~G~Dk~GrpV~~~r~g~~~~~~l~~~~~~~~~~~~~~~~~E~~~~~~~~~~~~~~~~~v~~~i~IiD~~g~   86 (203)
T d1auaa2           7 IAKFYPQYYHKTDKDGRPVYFEELGAVNLHEMNKVTSEERMLKNLVWEYESVVQYRLPACSRAAGHLVETSCTIMDLKGI   86 (203)
T ss_dssp             HGGGSCCEEEEECTTSCEEEEECGGGCCHHHHTTTCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTSCCCCEEEEEECTTC
T ss_pred             HHHHCCCcCCCCCCCCCEEEEEECCCCChHHhcccCCHHHHHHHHHHHHHHHHHHHHHHhhhhccCccceEEEEEECCCC
Confidence            345567778999999999999999988753    4588999999999999876532       24567899999999999


Q ss_pred             CCCCCC--HHHHHHHHHHHhchhhhccCcEEEEcCCcccHHHhhcccCC
Q psy12483        187 GLSCMD--YQMIKNLIWLLSRHYPERLGVCLILNSPTLFSGCWTVIRGW  233 (233)
Q Consensus       187 ~~~~~~--~~~~k~~~~~~q~~yP~rl~~i~ivN~p~~~~~~~~ivkpf  233 (233)
                      ++++++  ...++.+++++|++||++++++||||+|++|+++|+++|||
T Consensus        87 s~~~~~~~~~~~k~~~~~~q~~yPe~l~~i~ivN~P~~~~~~~~~vk~f  135 (203)
T d1auaa2          87 SISSAYSVMSYVREASYISQNYYPERMGKFYIINAPFGFSTAFRLFKPF  135 (203)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHSTTCEEEEEEESCCHHHHHHHHHHGGG
T ss_pred             ChHHhhhHHHHHHHHHHHHHHhChHhhcceEEECCcHHHHHHHHHHHhh
Confidence            999884  56789999999999999999999999999999999999997

>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Supernatant protein factor (SPF), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=8.5e-16  Score=101.46  Aligned_cols=69  Identities=22%  Similarity=0.350  Sum_probs=60.6

Q ss_pred             CCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCcc
Q psy12483         38 GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLT  108 (233)
Q Consensus        38 ~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~  108 (233)
                      |.++++++.+++++++||+++.+....  ....||.+|+|||||++ |+++|.+++.++++||+++++++|.
T Consensus         3 g~~gelt~~q~~~l~elr~~l~~~~~~--~~~~dd~~LlRFLrAr~fdv~kA~~ml~~~l~WR~~~~vD~Il   72 (75)
T d1olma1           3 GRVGDLSPRQKEALAKFRENVQDVLPA--LPNPDDYFLLRWLRARSFDLQKSEAMLRKHVEFRKQKDIDNII   72 (75)
T ss_dssp             SBTTBCCHHHHHHHHHHHHHHGGGGGG--SSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTGGGGG
T ss_pred             CCcccCCHHHHHHHHHHHHHHHhhccc--CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHcCchhhh
Confidence            456799999999999999999875432  23578999999999999 9999999999999999999998763

>d1auaa1 a.5.3.1 (A:4-96) N-terminal domain of phosphatidylinositol transfer protein sec14p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: N-terminal domain of phosphatidylinositol transfer protein sec14p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=1.1e-14  Score=99.54  Aligned_cols=68  Identities=24%  Similarity=0.401  Sum_probs=59.6

Q ss_pred             CCCCCCccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCCCCcc
Q psy12483         38 GDQATAAEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDVASLT  108 (233)
Q Consensus        38 ~~~~~~~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~~~l~  108 (233)
                      |.++++++.+.+++++||+++....  . ...+||.+|+||||+++ |+++|.++|.++++||++++++.|.
T Consensus        21 g~~g~Lt~~q~~~L~elr~~l~~~~--~-~~~~DD~~llRfLrAr~fd~~~a~~ml~~~l~wR~~~~~d~i~   89 (93)
T d1auaa1          21 GTPGNLDSAQEKALAELRKLLEDAG--F-IERLDDSTLLRFLRARKFDVQLAKEMFENCEKWRKDYGTDTIL   89 (93)
T ss_dssp             TSTTTCCTTHHHHHHHHHHHHHHTT--C-CSSCSHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTGGGHH
T ss_pred             CCCCcCCHHHHHHHHHHHHHHHHCC--C-CCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhCcchhh
Confidence            4456889999999999999999764  2 24679999999999999 9999999999999999999987654

>d1r5la1 a.5.3.1 (A:25-90) Alpha-tocopherol transfer protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: CRAL/TRIO N-terminal domain
family: CRAL/TRIO N-terminal domain
domain: Alpha-tocopherol transfer protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=8.3e-14  Score=88.98  Aligned_cols=56  Identities=25%  Similarity=0.294  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHHHHHHhHcCC
Q psy12483         49 EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKTNKWRVEYDV  104 (233)
Q Consensus        49 ~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~~~wR~~~~~  104 (233)
                      ++|++||+++.+...++.+...||.+|+||||+++ |+++|.++|.++++||++++.
T Consensus         2 ~aL~elR~~l~~~~~p~lp~~~dD~~LlrFLRarkf~~~ka~~~l~~y~~~R~~~pe   58 (66)
T d1r5la1           2 PGLAALRRRAREAGVPLAPLPLTDSFLLRFLRARDFDLDLAWRLLKNYYKWRAECPE   58 (66)
T ss_dssp             TTHHHHHHHHHHHTCCCSSSCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHCHH
T ss_pred             HHHHHHHHHHHHcCCCcCCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHCHH
Confidence            47899999998876554445679999999999999 999999999999999999753

>d2daha1 a.5.2.1 (A:8-48) Ubiquilin-3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.82  E-value=0.22  Score=26.99  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483         49 EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK   94 (233)
Q Consensus        49 ~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~   94 (233)
                      .++++|+++          .+.|+..-++-|.+.+ ||++|++.|.+
T Consensus         4 ~QL~~L~~M----------GF~d~~~Ni~AL~~t~Gdv~~Aie~Ll~   40 (41)
T d2daha1           4 VQLEQLRSM----------GFLNREANLQALIATGGDVDAAVEKLRQ   40 (41)
T ss_dssp             HHHHHHHHH----------TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred             HHHHHHHHc----------CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            355566655          4678899999999999 99999999865

>d1wgla_ a.5.2.4 (A:) Toll-interacting protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Toll-interacting protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.80  E-value=0.26  Score=28.90  Aligned_cols=42  Identities=19%  Similarity=0.371  Sum_probs=34.5

Q ss_pred             ccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483         44 AEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK   94 (233)
Q Consensus        44 ~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~   94 (233)
                      +...++.+++|++++.         .+|+..+..-|++++ +++.|+..|..
T Consensus         6 s~~~Ee~i~~LkeMFP---------~~D~~vI~~VL~a~~G~vd~aid~LL~   48 (59)
T d1wgla_           6 SGCSEEDLKAIQDMFP---------NMDQEVIRSVLEAQRGNKDAAINSLLQ   48 (59)
T ss_dssp             SSSCHHHHHHHHHHCS---------SSCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred             CcCcHHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            4455677989998863         468999999999999 99999998864

>d2dnaa1 a.5.2.1 (A:12-61) Ubiquilin-like protein Ubqlnl {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Ubiquilin-like protein Ubqlnl
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.06  E-value=0.42  Score=26.95  Aligned_cols=36  Identities=14%  Similarity=0.107  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHH
Q psy12483         49 EDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILK   94 (233)
Q Consensus        49 ~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~   94 (233)
                      .++++|+++          .+.|+..-++-|.+++ ||+.|++.|.+
T Consensus        10 ~QL~qL~~M----------GF~d~~~Ni~AL~~t~GdV~~Aie~Ll~   46 (50)
T d2dnaa1          10 KEMECLQAM----------GFVNYNANLQALIATDGDTNAAIYKLKS   46 (50)
T ss_dssp             HHHHHHHHH----------TCCCHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHHc----------CCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence            455555554          4678889999999999 99999999865

>d1veja1 a.5.2.1 (A:8-68) 4931431F19Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: 4931431F19Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.26  E-value=1  Score=26.44  Aligned_cols=37  Identities=19%  Similarity=0.279  Sum_probs=30.3

Q ss_pred             cHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483         47 NEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL   93 (233)
Q Consensus        47 ~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~   93 (233)
                      -..++++|+++          .+.|+..-++-|+.++ ||+.|++.|.
T Consensus        22 y~~QL~qL~eM----------GF~d~~~Nl~AL~~t~Gdv~~Aie~Ll   59 (61)
T d1veja1          22 YQQELEELKAL----------GFANRDANLQALVATDGDIHAAIEMLL   59 (61)
T ss_dssp             SHHHHHHHHHH----------TCCCHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred             HHHHHHHHHHc----------CCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence            35677777766          3668888899999999 9999999874

>d2bwba1 a.5.2.1 (A:328-371) DSK2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: DSK2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.92  E-value=0.36  Score=26.47  Aligned_cols=26  Identities=19%  Similarity=0.128  Sum_probs=23.0

Q ss_pred             CCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483         68 QYHNDFSLKRYLRAFK-QVDPAFQAIL   93 (233)
Q Consensus        68 ~~~~D~~llRfLr~~~-dv~~A~~~l~   93 (233)
                      .+.|+..-++-|++++ ||+.|++.|.
T Consensus        16 GF~d~~~Ni~AL~~t~GdV~~Aie~Ll   42 (44)
T d2bwba1          16 GFFDFDRNVAALRRSGGSVQGALDSLL   42 (44)
T ss_dssp             TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHcCCCHHHHHHHHh
Confidence            4678899999999999 9999999874

>d1mn3a_ a.5.2.4 (A:) Vacuolar protein sorting-associated protein vps9 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: CUE domain
domain: Vacuolar protein sorting-associated protein vps9
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.17  E-value=0.9  Score=25.95  Aligned_cols=41  Identities=15%  Similarity=0.235  Sum_probs=31.2

Q ss_pred             ccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHHHH
Q psy12483         46 VNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAILKT   95 (233)
Q Consensus        46 ~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~~~   95 (233)
                      +.++.++.|++++.         ..|...+---|++++ +++.|...+...
T Consensus        11 e~~e~~~~Lk~MFP---------~~D~~VI~~VL~a~~G~vd~aidaLL~M   52 (54)
T d1mn3a_          11 ERKDTLNTLQNMFP---------DMDPSLIEDVCIAKKSRIEPCVDALLSL   52 (54)
T ss_dssp             HHHHHHHHHHHHCT---------TSCHHHHHHHHSCSSCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCC---------CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence            34556666666642         468899999999999 999999988653

>d1vg5a_ a.5.2.1 (A:) Rhomboid family protein At3g58460 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: RuvA C-terminal domain-like
superfamily: UBA-like
family: UBA domain
domain: Rhomboid family protein At3g58460
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.99  E-value=4  Score=24.56  Aligned_cols=39  Identities=21%  Similarity=0.217  Sum_probs=28.7

Q ss_pred             ccccHHHHHHHHHHHHhhhCCCCCCCCChHHHHHHHHhcC-ChhHHHHHHH
Q psy12483         44 AEVNEEDFQKLKERMKMISDADPLQYHNDFSLKRYLRAFK-QVDPAFQAIL   93 (233)
Q Consensus        44 ~~~~~~~i~~lr~~l~~~~~~~~~~~~~D~~llRfLr~~~-dv~~A~~~l~   93 (233)
                      ....+++|++|.++           ..+.....+=|++++ |++.|.+.|-
T Consensus        26 ~~~~ee~i~~L~~M-----------GF~~~~a~~AL~~~~~n~e~A~~~Ll   65 (73)
T d1vg5a_          26 VAASEEQIQKLVAM-----------GFDRTQVEVALAAADDDLTVAVEILM   65 (73)
T ss_dssp             SCCCHHHHHHHHTT-----------TCCHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred             cCcCHHHHHHHHHh-----------CCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence            33456666665533           247788999999999 9999998774