Psyllid ID: psy12516
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 327 | 2.2.26 [Sep-21-2011] | |||||||
| Q8JZS7 | 343 | 3-hydroxymethyl-3-methylg | yes | N/A | 0.617 | 0.588 | 0.658 | 2e-77 | |
| A8WG57 | 335 | 3-hydroxymethyl-3-methylg | yes | N/A | 0.617 | 0.602 | 0.648 | 5e-77 | |
| D4A5C3 | 343 | 3-hydroxymethyl-3-methylg | yes | N/A | 0.654 | 0.623 | 0.625 | 8e-77 | |
| Q29448 | 325 | Hydroxymethylglutaryl-CoA | yes | N/A | 0.617 | 0.621 | 0.648 | 8e-77 | |
| P35915 | 298 | Hydroxymethylglutaryl-CoA | yes | N/A | 0.617 | 0.677 | 0.633 | 5e-75 | |
| Q5R9E1 | 325 | Hydroxymethylglutaryl-CoA | yes | N/A | 0.617 | 0.621 | 0.623 | 3e-74 | |
| Q8TB92 | 370 | 3-hydroxymethyl-3-methylg | no | N/A | 0.617 | 0.545 | 0.633 | 3e-74 | |
| Q8HXZ6 | 325 | Hydroxymethylglutaryl-CoA | N/A | N/A | 0.617 | 0.621 | 0.613 | 3e-74 | |
| P35914 | 325 | Hydroxymethylglutaryl-CoA | no | N/A | 0.617 | 0.621 | 0.613 | 2e-73 | |
| P97519 | 325 | Hydroxymethylglutaryl-CoA | no | N/A | 0.633 | 0.636 | 0.608 | 4e-73 |
| >sp|Q8JZS7|HMGC2_MOUSE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus musculus GN=Hmgcll1 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 289 bits (739), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 133/202 (65%), Positives = 163/202 (80%)
Query: 108 GVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167
G EIAVF +ASE FSK+NINC+IEES+ RF EV+S+A I VRGY+SC +GCPYEG+
Sbjct: 135 GATEIAVFGAASESFSKKNINCSIEESMGRFQEVISSARHMDIPVRGYVSCALGCPYEGS 194
Query: 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227
+ P VT V+ LY MGCYEISLGDTIGVGTPG+M++MLE V+ IP LAVHCHDTYG
Sbjct: 195 ITPQKVTEVSKRLYGMGCYEISLGDTIGVGTPGSMKMMLESVMKEIPPGALAVHCHDTYG 254
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
QALANILTA++ GI+V DS+++GLGGCPYA+GASGNVATEDL+YML GMG+ TG DL +
Sbjct: 255 QALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGMGLNTGVDLYKV 314
Query: 288 LRTGHYICGKLKKPSNSKVAKA 309
+ G +IC + K +NSKVA+A
Sbjct: 315 MEAGEFICKAVNKTTNSKVAQA 336
|
Involved in the catabolism of branched amino acids such as leucine. Mus musculus (taxid: 10090) EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 4 |
| >sp|A8WG57|HMGC2_DANRE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Danio rerio GN=hmgcll1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 288 bits (736), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 131/202 (64%), Positives = 163/202 (80%)
Query: 108 GVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167
G E+AVF SASE FS++NINC+IEESL+RF +VVS A GI VRGY+SC +GCPYEG
Sbjct: 130 GANEVAVFGSASETFSRKNINCSIEESLQRFEQVVSAAKQEGIPVRGYVSCALGCPYEGQ 189
Query: 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227
V P VT+VA L+++GCYE+SLGDTIGVGT G+M ML DVLT +PA LAVHCHDTYG
Sbjct: 190 VKPSQVTKVAKRLFELGCYEVSLGDTIGVGTAGSMAEMLSDVLTEVPAGALAVHCHDTYG 249
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
QAL NIL A++ G+SV D+S+AGLGGCP+A+GASGNV+TEDL+YML G+GIETG DL +
Sbjct: 250 QALPNILIALQMGVSVVDASVAGLGGCPFAKGASGNVSTEDLLYMLHGLGIETGVDLLKV 309
Query: 288 LRTGHYICGKLKKPSNSKVAKA 309
+ G +IC L + +NSKV++A
Sbjct: 310 MEAGDFICKALNRKTNSKVSQA 331
|
Involved in the catabolism of branched amino acids such as leucine. Danio rerio (taxid: 7955) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 4 |
| >sp|D4A5C3|HMGC2_RAT 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Rattus norvegicus GN=Hmgcll1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 135/216 (62%), Positives = 169/216 (78%), Gaps = 2/216 (0%)
Query: 96 LVYMLEG--KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVR 153
LV L+G ++ G EIAVF +ASE FSK+NINC+IEES+ RF +V+S+A I VR
Sbjct: 121 LVPNLQGLQHAVAAGATEIAVFGAASESFSKKNINCSIEESMGRFEQVISSARHMNIPVR 180
Query: 154 GYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI 213
GY+SC +GCPYEG++ P VT V+ LY MGCYEISLGDT+GVGTPG+M+ MLE V+ I
Sbjct: 181 GYVSCALGCPYEGSIMPQKVTEVSKRLYSMGCYEISLGDTVGVGTPGSMKTMLESVMKEI 240
Query: 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 273
P LAVHCHDTYGQALANILTA++ GI+V DS+++GLGGCPYA+GASGNVATEDL+YML
Sbjct: 241 PPGALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYML 300
Query: 274 EGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309
GMG+ TG DL ++ G +IC + K +NSKVA+A
Sbjct: 301 NGMGLNTGVDLHKVMEAGDFICKAVNKTTNSKVAQA 336
|
Non-mitochondrial 3-hydroxymethyl-3-methylglutaryl-CoA lyase that catalyzes a cation-dependent cleavage of (S)-3-hydroxy-3-methylglutaryl-CoA into acetyl-CoA and acetoacetate, a key step in ketogenesis, the products of which support energy production in nonhepatic animal tissues. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 4 |
| >sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2 | Back alignment and function description |
|---|
Score = 287 bits (734), Expect = 8e-77, Method: Compositional matrix adjust.
Identities = 131/202 (64%), Positives = 159/202 (78%)
Query: 108 GVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167
G KE+A+F +ASE+F+K+NINC+I+ESL+RF E++ A GI VRGY+SCV+GCPYEG
Sbjct: 120 GAKEVAIFGAASELFTKKNINCSIDESLQRFDEILKAARAAGISVRGYVSCVLGCPYEGK 179
Query: 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227
+ P V V LY MGCYEISLGDTIGVGTPG M+ ML VL +P LAVHCHDTYG
Sbjct: 180 ISPAKVAEVTKKLYSMGCYEISLGDTIGVGTPGAMKDMLSAVLQEVPVTALAVHCHDTYG 239
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
QALAN LTA++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYML G+GI TG +L L
Sbjct: 240 QALANTLTALQMGVSVMDSSVAGLGGCPYAQGASGNLATEDLVYMLAGLGIHTGVNLQKL 299
Query: 288 LRTGHYICGKLKKPSNSKVAKA 309
L G +IC L + +NSKVA+A
Sbjct: 300 LEAGAFICQALNRRTNSKVAQA 321
|
Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism. Bos taurus (taxid: 9913) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 4 |
| >sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus GN=HMGCL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 281 bits (719), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 128/202 (63%), Positives = 161/202 (79%)
Query: 108 GVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167
G KE+++F +ASE+F+K+NINC+IEESLERFSEV++ A I VRGY+SCV+GCPYEG
Sbjct: 93 GAKEVSIFGAASELFTKKNINCSIEESLERFSEVMNAARAASIPVRGYVSCVLGCPYEGN 152
Query: 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227
+ V V+ +Y MGCYEISLGD IG+GTPG+M+ ML V+ +P LAVHCHDTYG
Sbjct: 153 ISAAKVAEVSKKMYSMGCYEISLGDRIGIGTPGSMKEMLAAVMKEVPVGALAVHCHDTYG 212
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
QALANIL A++ G+SV D+S+AGLGGCPYA+GASGNVATEDLVYML G+GI TG DL L
Sbjct: 213 QALANILVALQMGVSVVDASVAGLGGCPYAQGASGNVATEDLVYMLNGLGIHTGVDLQKL 272
Query: 288 LRTGHYICGKLKKPSNSKVAKA 309
+ TG +IC L + +NSKV++A
Sbjct: 273 MDTGTFICNALNRRTNSKVSQA 294
|
Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism. Gallus gallus (taxid: 9031) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 4 |
| >sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 126/202 (62%), Positives = 157/202 (77%)
Query: 108 GVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167
G KE+A+F +ASE+F+K+NINC+IEES +RF ++ A + I VRGY+SC +GCPYEG
Sbjct: 120 GAKEVAIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGK 179
Query: 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227
+ P V V LY MGCYEISLGDTIGVGTPG M+ ML V+ +P LAVHCHDTYG
Sbjct: 180 ISPAKVAEVTKKLYSMGCYEISLGDTIGVGTPGIMKGMLSAVMQEVPLAALAVHCHDTYG 239
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
QALAN L A++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYMLEG+GI TG +L L
Sbjct: 240 QALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKL 299
Query: 288 LRTGHYICGKLKKPSNSKVAKA 309
L G++IC L + ++SKVA+A
Sbjct: 300 LEAGNFICQALNRKTSSKVAQA 321
|
Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism. Pongo abelii (taxid: 9601) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 4 |
| >sp|Q8TB92|HMGC2_HUMAN 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo sapiens GN=HMGCLL1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 128/202 (63%), Positives = 160/202 (79%)
Query: 108 GVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167
G EI+VF +ASE FSK+NINC+IEES+ +F EVV +A I RGY+SC +GCPYEG+
Sbjct: 165 GATEISVFGAASESFSKKNINCSIEESMGKFEEVVKSARHMNIPARGYVSCALGCPYEGS 224
Query: 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227
+ P VT V+ LY MGCYEISLGDTIGVGTPG+M+ MLE V+ IP LAVHCHDTYG
Sbjct: 225 ITPQKVTEVSKRLYGMGCYEISLGDTIGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYG 284
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
QALANILTA++ GI+V DS+++GLGGCPYA+GASGNVATEDL+YML G+G+ TG +L +
Sbjct: 285 QALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKV 344
Query: 288 LRTGHYICGKLKKPSNSKVAKA 309
+ G +IC + K +NSKVA+A
Sbjct: 345 MEAGDFICKAVNKTTNSKVAQA 366
|
Involved in the catabolism of branched amino acids such as leucine. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 4 |
| >sp|Q8HXZ6|HMGCL_MACFA Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Macaca fascicularis GN=HMGCL PE=2 SV=1 | Back alignment and function description |
|---|
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 124/202 (61%), Positives = 157/202 (77%)
Query: 108 GVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167
G KE+++F +ASE+F+K+N+NC+IEES +RF ++ A + I VRGY+SCV+GCPYEG
Sbjct: 120 GAKEVSIFGAASELFTKKNVNCSIEESFQRFDAILKAAQSANISVRGYVSCVLGCPYEGK 179
Query: 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227
+ P V V Y MGCYEISLGDTIGVGTPG M+ ML V+ +P LAVHCHDTYG
Sbjct: 180 ISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPPAALAVHCHDTYG 239
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
QALAN L A++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYMLEG+GI TG +L L
Sbjct: 240 QALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKL 299
Query: 288 LRTGHYICGKLKKPSNSKVAKA 309
L G++IC L + ++SKVA+A
Sbjct: 300 LEAGNFICQALNRKTSSKVAQA 321
|
Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism. Macaca fascicularis (taxid: 9541) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 4 |
| >sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2 | Back alignment and function description |
|---|
Score = 276 bits (705), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 124/202 (61%), Positives = 155/202 (76%)
Query: 108 GVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167
G KE+ +F +ASE+F+K+NINC+IEES +RF ++ A + I VRGY+SC +GCPYEG
Sbjct: 120 GAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGK 179
Query: 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227
+ P V V Y MGCYEISLGDTIGVGTPG M+ ML V+ +P LAVHCHDTYG
Sbjct: 180 ISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYG 239
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
QALAN L A++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYMLEG+GI TG +L L
Sbjct: 240 QALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKL 299
Query: 288 LRTGHYICGKLKKPSNSKVAKA 309
L G++IC L + ++SKVA+A
Sbjct: 300 LEAGNFICQALNRKTSSKVAQA 321
|
Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism. Homo sapiens (taxid: 9606) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 4 |
| >sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 275 bits (702), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 126/207 (60%), Positives = 158/207 (76%)
Query: 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGC 162
+++ G KE+++F +ASE+F+++N+NC+IEES +RF V+ A I VRGY+SC +GC
Sbjct: 115 EAVAAGAKEVSIFGAASELFTRKNVNCSIEESFQRFDGVMQAARAASISVRGYVSCALGC 174
Query: 163 PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHC 222
PYEG V P V VA LY MGCYEISLGDTIGVGTPG M+ ML VL +P LAVHC
Sbjct: 175 PYEGKVSPAKVAEVAKKLYSMGCYEISLGDTIGVGTPGLMKDMLTAVLHEVPVAALAVHC 234
Query: 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282
HDTYGQALAN L A++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYML G+GI TG
Sbjct: 235 HDTYGQALANTLVALQMGVSVVDSSVAGLGGCPYAKGASGNLATEDLVYMLTGLGIHTGV 294
Query: 283 DLTSLLRTGHYICGKLKKPSNSKVAKA 309
+L LL G +IC L + ++SKVA+A
Sbjct: 295 NLQKLLEAGDFICQALNRKTSSKVAQA 321
|
Key enzyme in ketone body formation (ketogenesis). Terminal step in leucine catabolism. Rattus norvegicus (taxid: 10116) EC: 4 EC: . EC: 1 EC: . EC: 3 EC: . EC: 4 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 327 | ||||||
| 193657026 | 347 | PREDICTED: hydroxymethylglutaryl-CoA lya | 0.675 | 0.636 | 0.711 | 3e-87 | |
| 193657024 | 332 | PREDICTED: hydroxymethylglutaryl-CoA lya | 0.675 | 0.665 | 0.711 | 4e-87 | |
| 241781172 | 327 | hydroxymethylglutaryl-CoA lyase, putativ | 0.620 | 0.620 | 0.681 | 6e-80 | |
| 442748761 | 328 | Putative hydroxymethylglutaryl-coa lyase | 0.620 | 0.618 | 0.681 | 1e-79 | |
| 195117126 | 306 | GI17729 [Drosophila mojavensis] gi|19391 | 0.633 | 0.676 | 0.637 | 2e-77 | |
| 427782193 | 328 | Putative hydroxymethylglutaryl-coa lyase | 0.623 | 0.621 | 0.653 | 2e-77 | |
| 301610161 | 331 | PREDICTED: hydroxymethylglutaryl-CoA lya | 0.847 | 0.836 | 0.528 | 3e-77 | |
| 148232581 | 328 | 3-hydroxymethyl-3-methylglutaryl-CoA lya | 0.847 | 0.844 | 0.525 | 3e-76 | |
| 209155904 | 324 | Hydroxymethylglutaryl-CoA lyase, mitocho | 0.837 | 0.845 | 0.526 | 4e-76 | |
| 195471613 | 323 | GE14242 [Drosophila yakuba] gi|194174198 | 0.633 | 0.640 | 0.623 | 6e-76 |
| >gi|193657026|ref|XP_001944099.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform 1 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 328 bits (840), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 188/222 (84%), Gaps = 1/222 (0%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
+MQ VKEIAVF SASE FS++NI C+I ESLERF +VVSTAL +GI+VRGYISCV GCP
Sbjct: 120 AMQHDVKEIAVFGSASEGFSQKNIGCSIAESLERFEDVVSTALDHGIKVRGYISCVCGCP 179
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
Y+GAV PH+V +++ AL+KMGCYEISLGDTIG+GTPGT+R ML++V+ ++P + LA+HCH
Sbjct: 180 YDGAVSPHDVAKMSDALFKMGCYEISLGDTIGIGTPGTIRAMLQEVMEMVPVENLALHCH 239
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQAL+NILTA+E GISVFDSS+AGLGGCPYARGASGNVATEDLVYML+GMGIETG D
Sbjct: 240 DTYGQALSNILTALEMGISVFDSSVAGLGGCPYARGASGNVATEDLVYMLQGMGIETGVD 299
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKALPVKETS-KTLESYAN 324
+ LL G YIC +L K + SKVAKAL KE K L+SY N
Sbjct: 300 MELLLGAGRYICEELGKNTESKVAKALSGKEKPMKFLQSYRN 341
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193657024|ref|XP_001944149.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 327 bits (839), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 158/222 (71%), Positives = 188/222 (84%), Gaps = 1/222 (0%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
+MQ VKEIAVF SASE FS++NI C+I ESLERF +VVSTAL +GI+VRGYISCV GCP
Sbjct: 105 AMQHDVKEIAVFGSASEGFSQKNIGCSIAESLERFEDVVSTALDHGIKVRGYISCVCGCP 164
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
Y+GAV PH+V +++ AL+KMGCYEISLGDTIG+GTPGT+R ML++V+ ++P + LA+HCH
Sbjct: 165 YDGAVSPHDVAKMSDALFKMGCYEISLGDTIGIGTPGTIRAMLQEVMEMVPVENLALHCH 224
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQAL+NILTA+E GISVFDSS+AGLGGCPYARGASGNVATEDLVYML+GMGIETG D
Sbjct: 225 DTYGQALSNILTALEMGISVFDSSVAGLGGCPYARGASGNVATEDLVYMLQGMGIETGVD 284
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKALPVKETS-KTLESYAN 324
+ LL G YIC +L K + SKVAKAL KE K L+SY N
Sbjct: 285 MELLLGAGRYICEELGKNTESKVAKALSGKEKPMKFLQSYRN 326
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|241781172|ref|XP_002400252.1| hydroxymethylglutaryl-CoA lyase, putative [Ixodes scapularis] gi|215510696|gb|EEC20149.1| hydroxymethylglutaryl-CoA lyase, putative, partial [Ixodes scapularis] | Back alignment and taxonomy information |
|---|
Score = 303 bits (777), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 141/207 (68%), Positives = 169/207 (81%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
++ G KEIAVF +ASE F+++NINC+IEES+++FS+V+ A NGI+VRGY+SCVVGCP
Sbjct: 118 ALAAGAKEIAVFGAASETFTQKNINCSIEESIKKFSDVLEAARDNGIKVRGYVSCVVGCP 177
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEG V P V +VA LY+ GCYEISLGDTIGVGTPGTMR ML+ VL +PA LAVHCH
Sbjct: 178 YEGPVAPEVVAKVAGMLYRAGCYEISLGDTIGVGTPGTMRPMLQAVLQQVPASALAVHCH 237
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQALANILTAM GI+ DSS+AGLGGCPYARGASGNVATED++YML GMGI TG D
Sbjct: 238 DTYGQALANILTAMAMGIATVDSSVAGLGGCPYARGASGNVATEDVLYMLHGMGIPTGVD 297
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKAL 310
L ++ G +IC L +P+NSKVA+AL
Sbjct: 298 LQKVIGAGEFICKALNRPNNSKVARAL 324
|
Source: Ixodes scapularis Species: Ixodes scapularis Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|442748761|gb|JAA66540.1| Putative hydroxymethylglutaryl-coa lyase [Ixodes ricinus] | Back alignment and taxonomy information |
|---|
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 141/207 (68%), Positives = 169/207 (81%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
++ G KEIAVF +ASE F+++NINCTIEES+++FS+V+ A NGI+VRGY+SCVVGCP
Sbjct: 119 ALAAGAKEIAVFGAASETFTQKNINCTIEESIKKFSDVLEAARDNGIKVRGYVSCVVGCP 178
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEG V P V +VA LY+ GCYEISLGDTIGVGTPGTMR ML+ VL +PA LAVHCH
Sbjct: 179 YEGPVAPEVVAKVAGMLYRAGCYEISLGDTIGVGTPGTMRPMLQAVLQQVPASALAVHCH 238
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQALANILTAM GI+ DSS+AGLGGCPYA+GASGNVATED++YML GMGI TG D
Sbjct: 239 DTYGQALANILTAMAMGIATVDSSVAGLGGCPYAKGASGNVATEDVLYMLHGMGIPTGVD 298
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKAL 310
L ++ G +IC L +P+NSKVA+AL
Sbjct: 299 LQKVIGAGEFICKALNRPNNSKVARAL 325
|
Source: Ixodes ricinus Species: Ixodes ricinus Genus: Ixodes Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195117126|ref|XP_002003100.1| GI17729 [Drosophila mojavensis] gi|193913675|gb|EDW12542.1| GI17729 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 132/207 (63%), Positives = 168/207 (81%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
+++ G +E+AVF +AS+ FS +N+NCT E++ERF V+ A NGIRVRGY+S VVGCP
Sbjct: 92 ALEAGAEEVAVFGAASDAFSLKNVNCTAAEAIERFKPVLEAAKKNGIRVRGYVSTVVGCP 151
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEGAVPP V +V TAL++MGCYEISLGDTIGVGTPG+MR ML++V +PA +LAVHCH
Sbjct: 152 YEGAVPPQAVVKVVTALHEMGCYEISLGDTIGVGTPGSMRKMLDEVTRAVPAQQLAVHCH 211
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQAL+NILT++E+GI V D+S++GLGGCPYARGASGN ATED+VYML GMG+ TG +
Sbjct: 212 DTYGQALSNILTSLEYGIRVVDASVSGLGGCPYARGASGNAATEDVVYMLHGMGMNTGVN 271
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKAL 310
L L+ G YIC +L +P+ SKV +A
Sbjct: 272 LDKLIEVGRYICTELGRPTESKVNRAW 298
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|427782193|gb|JAA56548.1| Putative hydroxymethylglutaryl-coa lyase [Rhipicephalus pulchellus] | Back alignment and taxonomy information |
|---|
Score = 295 bits (755), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 136/208 (65%), Positives = 170/208 (81%)
Query: 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGC 162
+++ G KEIAVF +ASE F+++NINC+IEES+++F +V+ A N I+VRGY+SCVVGC
Sbjct: 118 EALAAGAKEIAVFGAASETFTQKNINCSIEESIKKFYDVIEAAKANDIKVRGYVSCVVGC 177
Query: 163 PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHC 222
PYEGAV P V +VA LY+ GCYEISLGDTIGVGTPGTMR ML+ VL +PA LAVHC
Sbjct: 178 PYEGAVSPDVVAKVAGMLYRAGCYEISLGDTIGVGTPGTMRPMLQAVLKEVPATALAVHC 237
Query: 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282
HDTYGQALANILTA+ G++V DSS+AGLGGCPYARGA+GNVATED++YML GMGI TG
Sbjct: 238 HDTYGQALANILTALAMGVAVVDSSVAGLGGCPYARGATGNVATEDVLYMLHGMGIPTGV 297
Query: 283 DLTSLLRTGHYICGKLKKPSNSKVAKAL 310
DL ++ G +IC L +P+NSKV++A+
Sbjct: 298 DLQKVIGVGDFICKALNRPNNSKVSRAI 325
|
Source: Rhipicephalus pulchellus Species: Rhipicephalus pulchellus Genus: Rhipicephalus Family: Ixodidae Order: Ixodida Class: Arachnida Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|301610161|ref|XP_002934605.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Xenopus (Silurana) tropicalis] | Back alignment and taxonomy information |
|---|
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 148/280 (52%), Positives = 192/280 (68%), Gaps = 3/280 (1%)
Query: 33 LEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVA 92
L++ TV+P++ + +H + +A + A F + +A NV
Sbjct: 50 LQNEKTVVPSE-VKIHLINLLSEAGLQAIEATSFVSPKWVPQMADHKNVIQGIKKYPNVT 108
Query: 93 TEDLVYMLEG--KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150
L L G +++CG KE+A+F +ASE+FSK+NINC+I+ESL+RF +V++ A I
Sbjct: 109 YPVLTPNLTGFQAAVECGAKEVAIFGAASELFSKKNINCSIDESLQRFKDVIAAAKEANI 168
Query: 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVL 210
VRGY+SCV+GCPYEG V P V VA ++ MGCYEISLGDTIGVGTPG MR ML VL
Sbjct: 169 PVRGYVSCVLGCPYEGKVAPSKVAEVAYKMFSMGCYEISLGDTIGVGTPGGMRDMLRAVL 228
Query: 211 TVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 270
V+PA LAVHCHDTYGQALANIL A++ G+ V D+S+AGLGGCPYA+GASGNVATED+V
Sbjct: 229 DVVPAKALAVHCHDTYGQALANILVALQMGVQVVDASVAGLGGCPYAQGASGNVATEDVV 288
Query: 271 YMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKAL 310
YML G+GI+TG D+ L G +IC L K SNSKVA+A+
Sbjct: 289 YMLHGLGIQTGIDIKKLTEAGAFICKALGKKSNSKVAQAM 328
|
Source: Xenopus (Silurana) tropicalis Species: Xenopus (Silurana) tropicalis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|148232581|ref|NP_001085152.1| 3-hydroxymethyl-3-methylglutaryl-CoA lyase [Xenopus laevis] gi|47938724|gb|AAH72247.1| MGC82338 protein [Xenopus laevis] | Back alignment and taxonomy information |
|---|
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 147/280 (52%), Positives = 191/280 (68%), Gaps = 3/280 (1%)
Query: 33 LEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVA 92
L++ TV+P D + +H + +A + A F + +A N++
Sbjct: 47 LQNEKTVVPTD-VKIHLINMLSEAGLQAIEATSFVSPKWVPQMADHKNVMQGIKKYPNIS 105
Query: 93 TEDLVYMLEG--KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150
L L G +++CG KE+A+F +ASE+FSK+NINC+I+ESL+RF V++ A I
Sbjct: 106 YPVLTPNLTGFQAAVECGAKEVAIFGAASELFSKKNINCSIDESLQRFKAVITEAKEANI 165
Query: 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVL 210
VRGY+SCV+GCPYEG V P V VA ++ MGCYEISLGDTIGVGTPG MR ML VL
Sbjct: 166 PVRGYVSCVLGCPYEGKVAPSKVAEVAYKMFSMGCYEISLGDTIGVGTPGGMRDMLSAVL 225
Query: 211 TVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 270
V+PA LAVHCHDTYGQALANIL A++ G+ V D+S+AGLGGCPYA+GASGNVATED+V
Sbjct: 226 DVVPAKALAVHCHDTYGQALANILVALQMGVQVVDASVAGLGGCPYAQGASGNVATEDVV 285
Query: 271 YMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKAL 310
YML G+GI+TG DL L G +IC L K S+SKV++A+
Sbjct: 286 YMLHGLGIQTGIDLKKLTEAGAFICKALGKKSHSKVSQAI 325
|
Source: Xenopus laevis Species: Xenopus laevis Genus: Xenopus Family: Pipidae Order: Anura Class: Amphibia Phylum: Chordata Superkingdom: Eukaryota |
| >gi|209155904|gb|ACI34184.1| Hydroxymethylglutaryl-CoA lyase, mitochondrial precursor [Salmo salar] | Back alignment and taxonomy information |
|---|
Score = 291 bits (744), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 148/281 (52%), Positives = 194/281 (69%), Gaps = 7/281 (2%)
Query: 33 LEDVLTVIPADRLAVHCHDTYGQALANILTAMEF----GISVFDSSIAGLGGCPYARGAS 88
L++ TV+P++ + +H D +A +++ A F + + + G G S
Sbjct: 43 LQNEKTVVPSE-VKIHLIDMLSEAGLSVIEATSFVSPKWVPQMADQVEVMMGIHRRPGVS 101
Query: 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148
V T +L L +++ G E+A+F +ASE+FSK+NINC+++ESL+RF EV A
Sbjct: 102 YPVLTPNLKGFL--AAVKAGAAEVAIFGAASELFSKKNINCSVDESLQRFEEVTKAAKEA 159
Query: 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLED 208
G+ VRGY+SCV+GCPYEG V P V +VA LY MGCYEISLGDTIGVGTPG M ML+
Sbjct: 160 GVPVRGYVSCVLGCPYEGKVSPDKVAQVAKRLYSMGCYEISLGDTIGVGTPGGMTEMLQA 219
Query: 209 VLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATED 268
V +P + LAVHCHDTYGQALANIL A++ GISV DSS+AGLGGCPYA+GASGNVATED
Sbjct: 220 VSREVPVNALAVHCHDTYGQALANILIALQMGISVVDSSVAGLGGCPYAQGASGNVATED 279
Query: 269 LVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309
+VYML G+GI+TG DL L+ G +IC L K ++SKVA+A
Sbjct: 280 VVYMLHGLGIQTGVDLPKLMDAGAFICRSLNKKTSSKVAQA 320
|
Source: Salmo salar Species: Salmo salar Genus: Salmo Family: Salmonidae Order: Salmoniformes Class: Actinopterygii Phylum: Chordata Superkingdom: Eukaryota |
| >gi|195471613|ref|XP_002088097.1| GE14242 [Drosophila yakuba] gi|194174198|gb|EDW87809.1| GE14242 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 129/207 (62%), Positives = 167/207 (80%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
+++ G +E+AVF +AS+ FS +N+NCT E++ERF V+ A NG+RVRGY+S VVGCP
Sbjct: 109 ALEAGAEEVAVFGAASDAFSLKNVNCTAAEAIERFKPVLKAAQKNGVRVRGYVSTVVGCP 168
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEGAV P V +V ALY+MGCYEISLGDTIGVGTPGTMR ML++V V+PA LAVHCH
Sbjct: 169 YEGAVAPSAVVKVVDALYQMGCYEISLGDTIGVGTPGTMRRMLDEVTKVVPAKDLAVHCH 228
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQAL+NIL ++++GI V D+S++GLGGCPYA+GASGN ATED+VY+L GMG++TG +
Sbjct: 229 DTYGQALSNILVSLDYGIRVVDTSVSGLGGCPYAKGASGNAATEDVVYLLHGMGLDTGVN 288
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKAL 310
L L++ G YIC +L +PS SKV +A
Sbjct: 289 LDKLIQVGRYICSELGRPSESKVNRAW 315
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 327 | ||||||
| MGI|MGI:2446108 | 343 | Hmgcll1 "3-hydroxymethyl-3-met | 0.629 | 0.600 | 0.645 | 8.6e-72 | |
| RGD|1565090 | 343 | Hmgcll1 "3-hydroxymethyl-3-met | 0.654 | 0.623 | 0.625 | 1.8e-71 | |
| ZFIN|ZDB-GENE-080220-15 | 335 | hmgcll1 "3-hydroxymethyl-3-met | 0.844 | 0.823 | 0.512 | 2.3e-71 | |
| ZFIN|ZDB-GENE-040426-958 | 340 | hmgcl "3-hydroxymethyl-3-methy | 0.629 | 0.605 | 0.640 | 7.7e-71 | |
| UNIPROTKB|Q29448 | 325 | HMGCL "Hydroxymethylglutaryl-C | 0.629 | 0.633 | 0.635 | 9.9e-71 | |
| FB|FBgn0031877 | 323 | CG10399 [Drosophila melanogast | 0.629 | 0.637 | 0.621 | 2.1e-70 | |
| UNIPROTKB|F1NWD1 | 298 | HMGCL "Hydroxymethylglutaryl-C | 0.629 | 0.691 | 0.626 | 3.3e-70 | |
| UNIPROTKB|F1P1E7 | 301 | HMGCL "Hydroxymethylglutaryl-C | 0.629 | 0.684 | 0.626 | 3.3e-70 | |
| UNIPROTKB|F1PLJ1 | 304 | HMGCLL1 "Uncharacterized prote | 0.642 | 0.690 | 0.617 | 5.5e-70 | |
| UNIPROTKB|P35915 | 298 | HMGCL "Hydroxymethylglutaryl-C | 0.629 | 0.691 | 0.621 | 1.4e-69 |
| MGI|MGI:2446108 Hmgcll1 "3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 726 (260.6 bits), Expect = 8.6e-72, P = 8.6e-72
Identities = 133/206 (64%), Positives = 165/206 (80%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
++ G EIAVF +ASE FSK+NINC+IEES+ RF EV+S+A I VRGY+SC +GCP
Sbjct: 131 AVAAGATEIAVFGAASESFSKKNINCSIEESMGRFQEVISSARHMDIPVRGYVSCALGCP 190
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEG++ P VT V+ LY MGCYEISLGDTIGVGTPG+M++MLE V+ IP LAVHCH
Sbjct: 191 YEGSITPQKVTEVSKRLYGMGCYEISLGDTIGVGTPGSMKMMLESVMKEIPPGALAVHCH 250
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQALANILTA++ GI+V DS+++GLGGCPYA+GASGNVATEDL+YML GMG+ TG D
Sbjct: 251 DTYGQALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGMGLNTGVD 310
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKA 309
L ++ G +IC + K +NSKVA+A
Sbjct: 311 LYKVMEAGEFICKAVNKTTNSKVAQA 336
|
|
| RGD|1565090 Hmgcll1 "3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 723 (259.6 bits), Expect = 1.8e-71, P = 1.8e-71
Identities = 135/216 (62%), Positives = 169/216 (78%)
Query: 96 LVYMLEG--KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVR 153
LV L+G ++ G EIAVF +ASE FSK+NINC+IEES+ RF +V+S+A I VR
Sbjct: 121 LVPNLQGLQHAVAAGATEIAVFGAASESFSKKNINCSIEESMGRFEQVISSARHMNIPVR 180
Query: 154 GYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI 213
GY+SC +GCPYEG++ P VT V+ LY MGCYEISLGDT+GVGTPG+M+ MLE V+ I
Sbjct: 181 GYVSCALGCPYEGSIMPQKVTEVSKRLYSMGCYEISLGDTVGVGTPGSMKTMLESVMKEI 240
Query: 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 273
P LAVHCHDTYGQALANILTA++ GI+V DS+++GLGGCPYA+GASGNVATEDL+YML
Sbjct: 241 PPGALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYML 300
Query: 274 EGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309
GMG+ TG DL ++ G +IC + K +NSKVA+A
Sbjct: 301 NGMGLNTGVDLHKVMEAGDFICKAVNKTTNSKVAQA 336
|
|
| ZFIN|ZDB-GENE-080220-15 hmgcll1 "3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 143/279 (51%), Positives = 192/279 (68%)
Query: 33 LEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVA 92
L++ ++P + + + D Q ++ A F S + + +A S +V
Sbjct: 54 LQNEKEIVPTE-VKIQLIDLLSQTGLPVIEATSFVSSKWVAQMADHTAVLKGIKRSPDVR 112
Query: 93 TEDLVYMLEG--KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150
L ++G ++ G E+AVF SASE FS++NINC+IEESL+RF +VVS A GI
Sbjct: 113 YPVLTPNIQGFQAAVAAGANEVAVFGSASETFSRKNINCSIEESLQRFEQVVSAAKQEGI 172
Query: 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVL 210
VRGY+SC +GCPYEG V P VT+VA L+++GCYE+SLGDTIGVGT G+M ML DVL
Sbjct: 173 PVRGYVSCALGCPYEGQVKPSQVTKVAKRLFELGCYEVSLGDTIGVGTAGSMAEMLSDVL 232
Query: 211 TVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 270
T +PA LAVHCHDTYGQAL NIL A++ G+SV D+S+AGLGGCP+A+GASGNV+TEDL+
Sbjct: 233 TEVPAGALAVHCHDTYGQALPNILIALQMGVSVVDASVAGLGGCPFAKGASGNVSTEDLL 292
Query: 271 YMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309
YML G+GIETG DL ++ G +IC L + +NSKV++A
Sbjct: 293 YMLHGLGIETGVDLLKVMEAGDFICKALNRKTNSKVSQA 331
|
|
| ZFIN|ZDB-GENE-040426-958 hmgcl "3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase (hydroxymethylglutaricaciduria)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 717 (257.5 bits), Expect = 7.7e-71, P = 7.7e-71
Identities = 132/206 (64%), Positives = 162/206 (78%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
+++ G KE+A+F +ASE+FSK+NINC++EESL RF EV++ A G+ VRGY+SCV+GCP
Sbjct: 131 AVKAGAKEVAIFGAASELFSKKNINCSVEESLVRFEEVMTAAKQEGVSVRGYVSCVLGCP 190
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEG V P V VA LY MGCYE+SLGDTIGVGTPG M ML V +P + LAVHCH
Sbjct: 191 YEGKVSPSKVAEVAKRLYSMGCYEVSLGDTIGVGTPGGMTEMLNAVKKELPVEALAVHCH 250
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQALANIL A++ G+SV DSS+AGLGGCPYA+GASGNVATED+VYML G+GI TG D
Sbjct: 251 DTYGQALANILVALQNGVSVVDSSVAGLGGCPYAQGASGNVATEDVVYMLHGLGIHTGVD 310
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKA 309
L LL G +IC + + +NSKVA+A
Sbjct: 311 LPRLLDAGSFICHSINRRTNSKVAQA 336
|
|
| UNIPROTKB|Q29448 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 131/206 (63%), Positives = 161/206 (78%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
++ G KE+A+F +ASE+F+K+NINC+I+ESL+RF E++ A GI VRGY+SCV+GCP
Sbjct: 116 AVAAGAKEVAIFGAASELFTKKNINCSIDESLQRFDEILKAARAAGISVRGYVSCVLGCP 175
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEG + P V V LY MGCYEISLGDTIGVGTPG M+ ML VL +P LAVHCH
Sbjct: 176 YEGKISPAKVAEVTKKLYSMGCYEISLGDTIGVGTPGAMKDMLSAVLQEVPVTALAVHCH 235
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQALAN LTA++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYML G+GI TG +
Sbjct: 236 DTYGQALANTLTALQMGVSVMDSSVAGLGGCPYAQGASGNLATEDLVYMLAGLGIHTGVN 295
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKA 309
L LL G +IC L + +NSKVA+A
Sbjct: 296 LQKLLEAGAFICQALNRRTNSKVAQA 321
|
|
| FB|FBgn0031877 CG10399 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 713 (256.0 bits), Expect = 2.1e-70, P = 2.1e-70
Identities = 128/206 (62%), Positives = 166/206 (80%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
+++ G +E+AVF +AS+ FS +N+NCT E++ERF V+ A +G+RVRGY+S VVGCP
Sbjct: 109 ALEAGAEEVAVFGAASDAFSLKNVNCTAAEAIERFKPVLKAAQKHGVRVRGYVSTVVGCP 168
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEGAV P V +V ALY+MGCYEISLGDTIGVGTPGTMR ML++V V+PA LAVHCH
Sbjct: 169 YEGAVAPSAVVKVVEALYQMGCYEISLGDTIGVGTPGTMRRMLDEVTKVVPAKDLAVHCH 228
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQAL+NIL ++++GI V DSS++GLGGCPYA+GASGN ATED+VY+L GMG++TG +
Sbjct: 229 DTYGQALSNILVSLDYGIRVVDSSVSGLGGCPYAKGASGNAATEDVVYLLHGMGLDTGVN 288
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKA 309
L L++ G YIC +L + S SKV +A
Sbjct: 289 LDKLIQVGRYICTELGRTSESKVNRA 314
|
|
| UNIPROTKB|F1NWD1 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 129/206 (62%), Positives = 164/206 (79%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
++ G KE+++F +ASE+F+K+NINC+IEESLERFSEV++ A I VRGY+SCV+GCP
Sbjct: 89 AVAAGAKEVSIFGAASELFTKKNINCSIEESLERFSEVMNAARAASIPVRGYVSCVLGCP 148
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEG + V V+ +Y MGCYEISLGDTIG+GTPG+M+ ML V+ +P LAVHCH
Sbjct: 149 YEGNISAAKVAEVSKKMYSMGCYEISLGDTIGIGTPGSMKEMLAAVMKEVPVGALAVHCH 208
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQALANIL A++ G+SV D+S+AGLGGCPYA+GASGNVATEDLVYML G+GI TG D
Sbjct: 209 DTYGQALANILVALQMGVSVVDASVAGLGGCPYAQGASGNVATEDLVYMLNGLGIHTGVD 268
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKA 309
L L+ TG +IC L + +NSKV++A
Sbjct: 269 LQKLMDTGTFICNALNRRTNSKVSQA 294
|
|
| UNIPROTKB|F1P1E7 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 711 (255.3 bits), Expect = 3.3e-70, P = 3.3e-70
Identities = 129/206 (62%), Positives = 164/206 (79%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
++ G KE+++F +ASE+F+K+NINC+IEESLERFSEV++ A I VRGY+SCV+GCP
Sbjct: 92 AVAAGAKEVSIFGAASELFTKKNINCSIEESLERFSEVMNAARAASIPVRGYVSCVLGCP 151
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEG + V V+ +Y MGCYEISLGDTIG+GTPG+M+ ML V+ +P LAVHCH
Sbjct: 152 YEGNISAAKVAEVSKKMYSMGCYEISLGDTIGIGTPGSMKEMLAAVMKEVPVGALAVHCH 211
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQALANIL A++ G+SV D+S+AGLGGCPYA+GASGNVATEDLVYML G+GI TG D
Sbjct: 212 DTYGQALANILVALQMGVSVVDASVAGLGGCPYAQGASGNVATEDLVYMLNGLGIHTGVD 271
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKA 309
L L+ TG +IC L + +NSKV++A
Sbjct: 272 LQKLMDTGTFICNALNRRTNSKVSQA 297
|
|
| UNIPROTKB|F1PLJ1 HMGCLL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 709 (254.6 bits), Expect = 5.5e-70, P = 5.5e-70
Identities = 131/212 (61%), Positives = 166/212 (78%)
Query: 100 LEG--KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYIS 157
L+G +++ G EI+VF +ASE FSKRNINC+IEES+E+F EVV +A I RGY+S
Sbjct: 89 LQGFHRAVAAGATEISVFGAASESFSKRNINCSIEESMEKFEEVVKSARHMNIPARGYVS 148
Query: 158 CVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADR 217
C +GCPYEG + P VT V+ LY MGCYEISLGDT GVGTPG+M+ MLE V+ IP+
Sbjct: 149 CALGCPYEGNITPQKVTEVSKKLYGMGCYEISLGDTTGVGTPGSMKRMLESVMKEIPSSA 208
Query: 218 LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277
LAVHCHDTYGQALANILTA++ GI+V DS+++GLGGCPYA+GASGNVATEDL+YML G+G
Sbjct: 209 LAVHCHDTYGQALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGLG 268
Query: 278 IETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309
+ TG +L ++ G +IC + K +NSKVA+A
Sbjct: 269 LNTGVNLYKVMEAGDFICKAVNKTTNSKVAQA 300
|
|
| UNIPROTKB|P35915 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 705 (253.2 bits), Expect = 1.4e-69, P = 1.4e-69
Identities = 128/206 (62%), Positives = 163/206 (79%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
++ G KE+++F +ASE+F+K+NINC+IEESLERFSEV++ A I VRGY+SCV+GCP
Sbjct: 89 AVAAGAKEVSIFGAASELFTKKNINCSIEESLERFSEVMNAARAASIPVRGYVSCVLGCP 148
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
YEG + V V+ +Y MGCYEISLGD IG+GTPG+M+ ML V+ +P LAVHCH
Sbjct: 149 YEGNISAAKVAEVSKKMYSMGCYEISLGDRIGIGTPGSMKEMLAAVMKEVPVGALAVHCH 208
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQALANIL A++ G+SV D+S+AGLGGCPYA+GASGNVATEDLVYML G+GI TG D
Sbjct: 209 DTYGQALANILVALQMGVSVVDASVAGLGGCPYAQGASGNVATEDLVYMLNGLGIHTGVD 268
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKA 309
L L+ TG +IC L + +NSKV++A
Sbjct: 269 LQKLMDTGTFICNALNRRTNSKVSQA 294
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O81027 | HMGCL_ARATH | 4, ., 1, ., 3, ., 4 | 0.6231 | 0.6299 | 0.4401 | yes | N/A |
| A8WG57 | HMGC2_DANRE | 4, ., 1, ., 3, ., 4 | 0.6485 | 0.6177 | 0.6029 | yes | N/A |
| Q29448 | HMGCL_BOVIN | 4, ., 1, ., 3, ., 4 | 0.6485 | 0.6177 | 0.6215 | yes | N/A |
| P35915 | HMGCL_CHICK | 4, ., 1, ., 3, ., 4 | 0.6336 | 0.6177 | 0.6778 | yes | N/A |
| Q8JZS7 | HMGC2_MOUSE | 4, ., 1, ., 3, ., 4 | 0.6584 | 0.6177 | 0.5889 | yes | N/A |
| D4A5C3 | HMGC2_RAT | 4, ., 1, ., 3, ., 4 | 0.625 | 0.6544 | 0.6239 | yes | N/A |
| O34873 | HMGCL_BACSU | 4, ., 1, ., 3, ., 4 | 0.4752 | 0.6177 | 0.6755 | yes | N/A |
| Q5R9E1 | HMGCL_PONAB | 4, ., 1, ., 3, ., 4 | 0.6237 | 0.6177 | 0.6215 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 4.1.3.4 | 0.914 |
| 3rd Layer | 4.1.3 | 0.921 |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 327 | |||
| PLN02746 | 347 | PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyas | 1e-117 | |
| cd07938 | 274 | cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl- | 1e-116 | |
| PRK05692 | 287 | PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyas | 1e-115 | |
| cd03174 | 265 | cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyas | 3e-68 | |
| cd07938 | 274 | cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl- | 2e-61 | |
| PRK05692 | 287 | PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyas | 6e-61 | |
| PLN02746 | 347 | PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyas | 9e-60 | |
| COG0119 | 409 | COG0119, LeuA, Isopropylmalate/homocitrate/citrama | 3e-50 | |
| pfam00682 | 236 | pfam00682, HMGL-like, HMGL-like | 4e-43 | |
| cd03174 | 265 | cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyas | 8e-38 | |
| COG0119 | 409 | COG0119, LeuA, Isopropylmalate/homocitrate/citrama | 2e-25 | |
| pfam00682 | 236 | pfam00682, HMGL-like, HMGL-like | 4e-25 | |
| PRK11858 | 378 | PRK11858, aksA, trans-homoaconitate synthase; Revi | 3e-16 | |
| TIGR02090 | 363 | TIGR02090, LEU1_arch, isopropylmalate/citramalate/ | 4e-13 | |
| cd07937 | 275 | cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase an | 4e-11 | |
| cd07940 | 268 | cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase | 5e-11 | |
| TIGR00973 | 494 | TIGR00973, leuA_bact, 2-isopropylmalate synthase, | 6e-11 | |
| COG5016 | 472 | COG5016, COG5016, Pyruvate/oxaloacetate carboxyltr | 1e-10 | |
| cd07939 | 259 | cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus | 4e-10 | |
| cd07943 | 263 | cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldo | 4e-10 | |
| cd07947 | 279 | cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-ci | 1e-09 | |
| TIGR02660 | 365 | TIGR02660, nifV_homocitr, homocitrate synthase Nif | 3e-09 | |
| PRK14040 | 593 | PRK14040, PRK14040, oxaloacetate decarboxylase; Pr | 5e-09 | |
| TIGR02146 | 344 | TIGR02146, LysS_fung_arch, homocitrate synthase | 5e-09 | |
| cd07940 | 268 | cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase | 7e-09 | |
| PRK14041 | 467 | PRK14041, PRK14041, oxaloacetate decarboxylase; Pr | 1e-08 | |
| PRK11858 | 378 | PRK11858, aksA, trans-homoaconitate synthase; Revi | 2e-08 | |
| TIGR02090 | 363 | TIGR02090, LEU1_arch, isopropylmalate/citramalate/ | 2e-08 | |
| PRK12331 | 448 | PRK12331, PRK12331, oxaloacetate decarboxylase; Pr | 2e-08 | |
| PRK12330 | 499 | PRK12330, PRK12330, oxaloacetate decarboxylase; Pr | 2e-08 | |
| PRK09389 | 488 | PRK09389, PRK09389, (R)-citramalate synthase; Prov | 2e-08 | |
| COG5016 | 472 | COG5016, COG5016, Pyruvate/oxaloacetate carboxyltr | 3e-08 | |
| TIGR01108 | 582 | TIGR01108, oadA, oxaloacetate decarboxylase alpha | 3e-08 | |
| cd07944 | 266 | cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate | 6e-08 | |
| cd07937 | 275 | cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase an | 9e-08 | |
| cd07944 | 266 | cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate | 9e-08 | |
| PRK00915 | 513 | PRK00915, PRK00915, 2-isopropylmalate synthase; Va | 9e-08 | |
| PRK09282 | 592 | PRK09282, PRK09282, pyruvate carboxylase subunit B | 2e-07 | |
| TIGR03217 | 333 | TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerat | 2e-07 | |
| PLN03228 | 503 | PLN03228, PLN03228, methylthioalkylmalate synthase | 2e-07 | |
| cd07948 | 262 | cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae hom | 4e-07 | |
| PRK14040 | 593 | PRK14040, PRK14040, oxaloacetate decarboxylase; Pr | 2e-06 | |
| PRK08195 | 337 | PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydro | 3e-06 | |
| PRK09282 | 592 | PRK09282, PRK09282, pyruvate carboxylase subunit B | 7e-06 | |
| cd07945 | 280 | cd07945, DRE_TIM_CMS, Leptospira interrogans citra | 9e-06 | |
| TIGR00973 | 494 | TIGR00973, leuA_bact, 2-isopropylmalate synthase, | 2e-05 | |
| cd07943 | 263 | cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldo | 2e-05 | |
| TIGR02146 | 344 | TIGR02146, LysS_fung_arch, homocitrate synthase | 2e-05 | |
| PRK09389 | 488 | PRK09389, PRK09389, (R)-citramalate synthase; Prov | 4e-05 | |
| TIGR01108 | 582 | TIGR01108, oadA, oxaloacetate decarboxylase alpha | 4e-05 | |
| cd07948 | 262 | cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae hom | 4e-05 | |
| PRK12330 | 499 | PRK12330, PRK12330, oxaloacetate decarboxylase; Pr | 5e-05 | |
| PRK00915 | 513 | PRK00915, PRK00915, 2-isopropylmalate synthase; Va | 5e-05 | |
| cd07945 | 280 | cd07945, DRE_TIM_CMS, Leptospira interrogans citra | 5e-05 | |
| cd07941 | 273 | cd07941, DRE_TIM_LeuA3, Desulfobacterium autotroph | 8e-05 | |
| TIGR01235 | 1143 | TIGR01235, pyruv_carbox, pyruvate carboxylase | 1e-04 | |
| cd07939 | 259 | cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus | 2e-04 | |
| PRK12331 | 448 | PRK12331, PRK12331, oxaloacetate decarboxylase; Pr | 2e-04 | |
| PLN03228 | 503 | PLN03228, PLN03228, methylthioalkylmalate synthase | 6e-04 | |
| cd07941 | 273 | cd07941, DRE_TIM_LeuA3, Desulfobacterium autotroph | 6e-04 | |
| TIGR02660 | 365 | TIGR02660, nifV_homocitr, homocitrate synthase Nif | 9e-04 | |
| TIGR00977 | 526 | TIGR00977, LeuA_rel, 2-isopropylmalate synthase/ho | 0.001 | |
| PRK12581 | 468 | PRK12581, PRK12581, oxaloacetate decarboxylase; Pr | 0.001 | |
| TIGR00977 | 526 | TIGR00977, LeuA_rel, 2-isopropylmalate synthase/ho | 0.003 | |
| cd07947 | 279 | cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-ci | 0.004 |
| >gnl|CDD|178347 PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Score = 342 bits (878), Expect = e-117
Identities = 137/213 (64%), Positives = 161/213 (75%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
++ G KE+AVFASASE FSK NINC+IEESL R+ EV A + I VRGY+SCVVGCP
Sbjct: 130 AIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCP 189
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
EG VPP V VA LY MGCYEISLGDTIGVGTPGT+ MLE V+ V+P D+LAVH H
Sbjct: 190 IEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFH 249
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
DTYGQALANIL +++ GIS DSS+AGLGGCPYA+GASGNVATED+VYML G+G+ T D
Sbjct: 250 DTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVD 309
Query: 284 LTSLLRTGHYICGKLKKPSNSKVAKALPVKETS 316
L L+ G +I L +PS SK A AL + T+
Sbjct: 310 LGKLMAAGDFISKHLGRPSGSKTAVALSARITA 342
|
Length = 347 |
| >gnl|CDD|163676 cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 337 bits (866), Expect = e-116
Identities = 120/192 (62%), Positives = 139/192 (72%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
+ GV E+AVF SASE FS++NINC+I ESLERF V A G+RVRGY+S GCPY
Sbjct: 83 LAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPY 142
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
EG VPP V VA L +GC EISLGDTIGV TP +R +LE VL P ++LA+H HD
Sbjct: 143 EGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHD 202
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADL 284
T GQALANIL A+E G+ FDSS+ GLGGCP+A GA+GNVATEDLVYMLEGMGIETG DL
Sbjct: 203 TRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIETGIDL 262
Query: 285 TSLLRTGHYICG 296
LL +I
Sbjct: 263 DKLLAAARWISE 274
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 274 |
| >gnl|CDD|180206 PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Score = 334 bits (860), Expect = e-115
Identities = 129/195 (66%), Positives = 152/195 (77%)
Query: 107 CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG 166
G E+AVFASASE FS++NINC+I ESLERF V A G+RVRGY+SCV+GCPYEG
Sbjct: 91 AGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEG 150
Query: 167 AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTY 226
VPP V VA L+ +GCYEISLGDTIGVGTPG +R +LE VL PA+RLA H HDTY
Sbjct: 151 EVPPEAVADVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTY 210
Query: 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTS 286
GQALANI ++E GI+VFD+S+ GLGGCPYA GASGNVATED++YML G+GIETG DL
Sbjct: 211 GQALANIYASLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIETGIDLDK 270
Query: 287 LLRTGHYICGKLKKP 301
L+R G +I KL +P
Sbjct: 271 LVRAGQFIQSKLGRP 285
|
Length = 287 |
| >gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Score = 213 bits (546), Expect = 3e-68
Identities = 76/193 (39%), Positives = 107/193 (55%), Gaps = 10/193 (5%)
Query: 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGC 162
++++ GV E+ +F SASE S++N+N + EE LE E + A G+ V G + GC
Sbjct: 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC 141
Query: 163 PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHC 222
P V VA AL + G EISL DT+G+ TP + +++ + +P L +H
Sbjct: 142 KT----DPEYVLEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHT 197
Query: 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282
H+T G A+AN L A+E G D S+ GLG +GN ATEDLV LEG+GI+TG
Sbjct: 198 HNTLGLAVANSLAALEAGADRVDGSVNGLG------ERAGNAATEDLVAALEGLGIDTGI 251
Query: 283 DLTSLLRTGHYIC 295
DL LL Y+
Sbjct: 252 DLEKLLEISRYVE 264
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 265 |
| >gnl|CDD|163676 cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 196 bits (501), Expect = 2e-61
Identities = 68/109 (62%), Positives = 83/109 (76%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
+VA L +GC EISLGDTIGV TP +R +LE VL P ++LA+H HDT GQALANI
Sbjct: 152 AEVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANI 211
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
L A+E G+ FDSS+ GLGGCP+A GA+GNVATEDLVYMLEG ++ G+
Sbjct: 212 LAALEAGVRRFDSSVGGLGGCPFAPGATGNVATEDLVYMLEGMGIETGI 260
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 274 |
| >gnl|CDD|180206 PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 6e-61
Identities = 74/124 (59%), Positives = 92/124 (74%)
Query: 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 62
VA L+ +GCYEISLGDTIGVGTPG +R +LE VL PA+RLA H HDTYGQALANI
Sbjct: 160 VAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYA 219
Query: 63 AMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMF 122
++E GI+VFD+S+ GLGGCPYA GASGNVATED++YML G ++ G+ + + +
Sbjct: 220 SLEEGITVFDASVGGLGGCPYAPGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQ 279
Query: 123 SKRN 126
SK
Sbjct: 280 SKLG 283
|
Length = 287 |
| >gnl|CDD|178347 PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Score = 195 bits (496), Expect = 9e-60
Identities = 77/107 (71%), Positives = 88/107 (82%)
Query: 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 62
VA LY MGCYEISLGDTIGVGTPGT+ MLE V+ V+P D+LAVH HDTYGQALANIL
Sbjct: 202 VAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILV 261
Query: 63 AMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
+++ GIS DSS+AGLGGCPYA+GASGNVATED+VYML G + V
Sbjct: 262 SLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNV 308
|
Length = 347 |
| >gnl|CDD|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 171 bits (436), Expect = 3e-50
Identities = 53/200 (26%), Positives = 88/200 (44%), Gaps = 10/200 (5%)
Query: 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGC 162
++ GV I +F + S++ + + T EE LER + V A +G+ VR
Sbjct: 84 ALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATR- 142
Query: 163 PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVH 221
P + V A + G I+L DT+GV TP + ++E + +P L+VH
Sbjct: 143 -----TDPEFLAEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVH 197
Query: 222 CHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281
CH+ G A+AN L A+E G + ++ G+G G + + + + G++TG
Sbjct: 198 CHNDLGMAVANSLAAVEAGADQVEGTVNGIG---ERAGNAALEEVVLALALRKDYGVDTG 254
Query: 282 ADLTSLLRTGHYICGKLKKP 301
DL L + P
Sbjct: 255 IDLEKLTEASRLVERLTGIP 274
|
Length = 409 |
| >gnl|CDD|201390 pfam00682, HMGL-like, HMGL-like | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 4e-43
Identities = 52/171 (30%), Positives = 78/171 (45%), Gaps = 12/171 (7%)
Query: 107 CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG 166
G + VF + S++ K +N EE +R V A + GI V +GC G
Sbjct: 78 AGADRVHVFIATSDLHRKYKLNKDREEVADRAVAAVEAARSAGIDVE------LGCEDAG 131
Query: 167 AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTY 226
+ V + G I++ DT+GV TP ++ + +P + VHCH+
Sbjct: 132 RTDLAFLIEVVEVAQEAGATRINIADTVGVLTPNEAADLISALKDRVPPVIIEVHCHNDL 191
Query: 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277
G A+AN L A+E G D ++ GLG +GN A E+LV LE +G
Sbjct: 192 GMAVANSLAAVEAGADRVDGTVNGLG------ERAGNAALEELVAALEVLG 236
|
This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase. Length = 236 |
| >gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Score = 135 bits (342), Expect = 8e-38
Identities = 45/124 (36%), Positives = 66/124 (53%), Gaps = 7/124 (5%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
++VA AL + G EISL DT+G+ TP + +++ + +P L +H H+T G A+AN
Sbjct: 149 LEVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANS 208
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120
L A+E G D S+ GLG +GN ATEDLV LEG + G+ + S
Sbjct: 209 LAALEAGADRVDGSVNGLG------ERAGNAATEDLVAALEGLGIDTGID-LEKLLEISR 261
Query: 121 MFSK 124
+
Sbjct: 262 YVEE 265
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 265 |
| >gnl|CDD|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 5/127 (3%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALAN 59
+V A + G I+L DT+GV TP + ++E + +P L+VHCH+ G A+AN
Sbjct: 149 AEVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVAN 208
Query: 60 ILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASAS 119
L A+E G + ++ G+G G + + + + + G+ + AS
Sbjct: 209 SLAAVEAGADQVEGTVNGIG---ERAGNAALEEVVLALALRKDYGVDTGID-LEKLTEAS 264
Query: 120 EMFSKRN 126
+ +
Sbjct: 265 RLVERLT 271
|
Length = 409 |
| >gnl|CDD|201390 pfam00682, HMGL-like, HMGL-like | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-25
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 6/100 (6%)
Query: 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 62
V + G I++ DT+GV TP ++ + +P + VHCH+ G A+AN L
Sbjct: 141 VVEVAQEAGATRINIADTVGVLTPNEAADLISALKDRVPPVIIEVHCHNDLGMAVANSLA 200
Query: 63 AMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 102
A+E G D ++ GLG +GN A E+LV LE
Sbjct: 201 AVEAGADRVDGTVNGLG------ERAGNAALEELVAALEV 234
|
This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase. Length = 236 |
| >gnl|CDD|183341 PRK11858, aksA, trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 78.3 bits (194), Expect = 3e-16
Identities = 55/188 (29%), Positives = 88/188 (46%), Gaps = 18/188 (9%)
Query: 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGC 162
S+ CGV + +F + S++ K + T EE LER E V A +G+ V
Sbjct: 83 ASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVS------FSA 136
Query: 163 PYEGA--VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220
E A + A A + G + DT+G+ P TM ++++++ + + V
Sbjct: 137 --EDASRTDLDFLIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIP-IEV 193
Query: 221 HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE-GMGIE 279
HCH+ +G A AN L +E G +++ GLG R +GN A E++V L+ GI+
Sbjct: 194 HCHNDFGMATANALAGIEAGAKQVHTTVNGLG----ER--AGNAALEEVVMALKYLYGID 247
Query: 280 TGADLTSL 287
G D L
Sbjct: 248 LGIDTERL 255
|
Length = 378 |
| >gnl|CDD|233719 TIGR02090, LEU1_arch, isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 4e-13
Identities = 50/197 (25%), Positives = 86/197 (43%), Gaps = 30/197 (15%)
Query: 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGC 162
K++ CGV I F + S + K + + +E LE+ E V A +G+ V
Sbjct: 79 KAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIV---------- 128
Query: 163 PYEGAVPPHNVTR--------VATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP 214
+ TR V + G I++ DT+GV TP M +++ + +
Sbjct: 129 ----EFSAEDATRTDIDFLIKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK 184
Query: 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274
++VHCH+ +G A AN + ++ G ++ G+G R GN A E++V L+
Sbjct: 185 LP-ISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIG----ERA--GNAALEEVVMALK 237
Query: 275 GM-GIETGADLTSLLRT 290
+ G++T L T
Sbjct: 238 YLYGVKTKIKTEKLYET 254
|
Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by TIGR00973. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterized as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. Length = 363 |
| >gnl|CDD|163675 cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 4e-11
Identities = 42/140 (30%), Positives = 63/140 (45%), Gaps = 21/140 (15%)
Query: 165 EGAV-----PPHNV---TRVATALYKMGCYEISLGDTIGVGTPGTMRL---MLEDVLTVI 213
EGA+ P H + ++A L MG I + D G+ TP L+ + +
Sbjct: 135 EGAICYTGSPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGLP 194
Query: 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 273
+ +H HDT G A+A L A E G+ + D++I+ L G + +TE +V L
Sbjct: 195 ----IHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSGG------TSQPSTESMVAAL 244
Query: 274 EGMGIETGADLTSLLRTGHY 293
G G +TG DL L Y
Sbjct: 245 RGTGRDTGLDLEKLEEISEY 264
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex. In addition to the catalytic domain, transcarboxylase 5S has several other domains including a carbamoyl-phosphate synthase domain, a biotin carboxylase domain, a carboxyltransferase domain, and an ATP-grasp domain. Pyruvate carboxylase, like TC, is a biotin-dependent enzyme that catalyzes the carboxylation of pyruvate to produce oxaloacetate. In mammals, PC has critical roles in gluconeogenesis, lipogenesis, glyceroneogenesis, and insulin secretion. Inherited PC deficiencies are linked to serious diseases in humans such as lactic acidemia, hypoglycemia, psychomotor retardation, and death. PC is a single-chain enzyme and is active only in its homotetrameric form. PC has three domains, an N-terminal biotin carboxylase domain, a carboxyltransferase domain (this alignment model), and a C-terminal biotin-carboxyl carrier protein domain. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 275 |
| >gnl|CDD|163678 cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 5e-11
Identities = 57/195 (29%), Positives = 89/195 (45%), Gaps = 22/195 (11%)
Query: 109 VKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168
V I F + S++ K + T EE LER E V A ++G+ V S E A
Sbjct: 87 VDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE--FSA------EDAT 138
Query: 169 --PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADR--LAVHCHD 224
+ V A + G I++ DT+G TP +++ + +P + ++VHCH+
Sbjct: 139 RTDLDFLIEVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHN 198
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV----YMLEGMGIET 280
G A+AN L A+E G + +I G+G R +GN A E++V + G+ET
Sbjct: 199 DLGLAVANSLAAVEAGARQVECTINGIG----ER--AGNAALEEVVMALKTRYDYYGVET 252
Query: 281 GADLTSLLRTGHYIC 295
G D L T +
Sbjct: 253 GIDTEELYETSRLVS 267
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 268 |
| >gnl|CDD|130046 TIGR00973, leuA_bact, 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-11
Identities = 50/194 (25%), Positives = 86/194 (44%), Gaps = 21/194 (10%)
Query: 110 KEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCV-VGCPYEGAV 168
I F + S + + + T +E LER +V A + + V C G
Sbjct: 91 FRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYA-------KNFTDDVEFSCEDAGRT 143
Query: 169 PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA-DR--LAVHCHDT 225
+ R+ A G I++ DT+G P +++ + +P D+ L+VHCH+
Sbjct: 144 EIPFLARIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHND 203
Query: 226 YGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML----EGMGIETG 281
G A+AN L A++ G + +I G+G +GN A E++V L + +G+ETG
Sbjct: 204 LGLAVANSLAAVQNGARQVECTINGIG------ERAGNAALEEVVMALKVRKDFLGVETG 257
Query: 282 ADLTSLLRTGHYIC 295
+ + RT +
Sbjct: 258 INTKEIYRTSRLVS 271
|
This is the first enzyme of leucine biosynthesis. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 494 |
| >gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 61.6 bits (150), Expect = 1e-10
Identities = 43/138 (31%), Positives = 60/138 (43%), Gaps = 16/138 (11%)
Query: 169 PPHNV---TRVATALYKMGCYEISLGDTIGVGTP-GTMRL--MLEDVLTVIPADRLAVHC 222
P H + +A L +MG I + D G+ TP L ++ L V + +H
Sbjct: 151 PVHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPV----PVELHT 206
Query: 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282
H T G A L A+E G+ D++I+ P + G S ATE +V L G G +TG
Sbjct: 207 HATSGMAEMTYLKAVEAGVDGIDTAIS-----PLSGGTS-QPATETMVAALRGTGYDTGL 260
Query: 283 DLTSLLRTGHYICGKLKK 300
DL L Y KK
Sbjct: 261 DLELLEEIAEYFREVRKK 278
|
Length = 472 |
| >gnl|CDD|163677 cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 59.1 bits (144), Expect = 4e-10
Identities = 47/187 (25%), Positives = 78/187 (41%), Gaps = 18/187 (9%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
+++CGV + + S++ + L++ +V A G+ V VG
Sbjct: 78 ALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFV------SVGA- 130
Query: 164 YEGA--VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVH 221
E A P + A + G + DT+G+ P T ++ + L H
Sbjct: 131 -EDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLP-LEFH 188
Query: 222 CHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM-GIET 280
H+ G A AN L A+ G + ++ GLG R +GN A E++V L+ + G +T
Sbjct: 189 AHNDLGLATANTLAAVRAGATHVSVTVNGLG----ER--AGNAALEEVVMALKHLYGRDT 242
Query: 281 GADLTSL 287
G D T L
Sbjct: 243 GIDTTRL 249
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 259 |
| >gnl|CDD|163681 cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 4e-10
Identities = 37/83 (44%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 206 LEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVA 265
L + L P + H H+ G A+AN L A+E G + D S+AGLG GA GN
Sbjct: 179 LREALDPTP---VGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLG-----AGA-GNTP 229
Query: 266 TEDLVYMLEGMGIETGADLTSLL 288
E LV +LE MGIETG DL L+
Sbjct: 230 LEVLVAVLERMGIETGIDLYKLM 252
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 263 |
| >gnl|CDD|163684 cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 50/206 (24%), Positives = 88/206 (42%), Gaps = 30/206 (14%)
Query: 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165
+ G+KE + S S+ + + T EE++E++ E+V AL +GI+ R ++ +
Sbjct: 85 EMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIY 144
Query: 166 GAVPPHNVTRVATALYKMGCYE-----ISLGDTIGVGT-----------PGTMRLMLEDV 209
G V P L K+ I L DT+G G P + + +D
Sbjct: 145 GFVLP-----FVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKD- 198
Query: 210 LTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDL 269
+P++ L H H+ + +A+AN + A +G S + ++ G+G R +GN E +
Sbjct: 199 -CGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGIG----ER--TGNCPLEAM 251
Query: 270 VYMLEG-MGIETGADLTSLLRTGHYI 294
V G G +L + Y
Sbjct: 252 VIEYAQLKGNFDGMNLEVITEIAEYF 277
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 279 |
| >gnl|CDD|233965 TIGR02660, nifV_homocitr, homocitrate synthase NifV | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 45/185 (24%), Positives = 81/185 (43%), Gaps = 14/185 (7%)
Query: 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP 163
+ +CGV + + S++ + + LER + +VS A G+ V VG
Sbjct: 81 AARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFV------SVGGE 134
Query: 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
P + +A + G DT+G+ P + ++ + + L +H H
Sbjct: 135 DASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVDLP-LEMHAH 193
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM-GIETGA 282
+ G A AN L A+ G + ++++ GLG R +GN A E++ L+ + G +TG
Sbjct: 194 NDLGMATANTLAAVRAGATHVNTTVNGLG----ER--AGNAALEEVAMALKRLLGRDTGI 247
Query: 283 DLTSL 287
D + L
Sbjct: 248 DTSRL 252
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 365 |
| >gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 16/125 (12%)
Query: 169 PPHNV-TRVATA--LYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD---RLAVHC 222
P H + T V A L MG + + D G+ P ++++ I L +HC
Sbjct: 150 PVHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKP----YAAYELVSRIKKRVDVPLHLHC 205
Query: 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282
H T G + A +L A+E GI D++I+ + Y G+ ATE LV LEG +TG
Sbjct: 206 HATTGLSTATLLKAIEAGIDGVDTAISSM-SMTY-----GHSATETLVATLEGTERDTGL 259
Query: 283 DLTSL 287
D+ L
Sbjct: 260 DILKL 264
|
Length = 593 |
| >gnl|CDD|162728 TIGR02146, LysS_fung_arch, homocitrate synthase | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 5e-09
Identities = 35/147 (23%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165
+ GV I +F S++ + LE E + A + G+ VR S E
Sbjct: 80 ELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVR--FSAEDTFRSE 137
Query: 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT 225
A ++ + + G + + DT+G P + ++ V+ V+P + +H H+
Sbjct: 138 LA----DLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHND 193
Query: 226 YGQALANILTAMEFGISVFDSSIAGLG 252
G A+AN A+E G ++ D+++ G+G
Sbjct: 194 TGCAVANAYNAIEGGATIVDTTVLGIG 220
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. Length = 344 |
| >gnl|CDD|163678 cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 7e-09
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADR--LAVHCHDTYGQALAN 59
+V A + G I++ DT+G TP +++ + +P + ++VHCH+ G A+AN
Sbjct: 147 EVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVAN 206
Query: 60 ILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 97
L A+E G + +I G+G R +GN A E++V
Sbjct: 207 SLAAVEAGARQVECTINGIG----ER--AGNAALEEVV 238
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 268 |
| >gnl|CDD|237593 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 58/226 (25%), Positives = 91/226 (40%), Gaps = 41/226 (18%)
Query: 94 EDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVR 153
+D+V + K + G+ I +F + +++ RN+ +IE + + +G V+
Sbjct: 94 DDVVELFVKKVAEYGLDIIRIFDALNDI---RNLEKSIEVAKK-----------HGAHVQ 139
Query: 154 GYISCVVGCPYEGAVPPHNVTR---VATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVL 210
G IS V P H + A L MG I + D G+ TP + E V
Sbjct: 140 GAISYTVS-------PVHTLEYYLEFARELVDMGVDSICIKDMAGLLTP---KRAYELVK 189
Query: 211 TV-----IPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVA 265
+ +P + VH H T G A L A+E G +FD++I+ P++ G S
Sbjct: 190 ALKKKFGVPVE---VHSHCTTGLASLAYLAAVEAGADMFDTAIS-----PFSMGTS-QPP 240
Query: 266 TEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKALP 311
E + Y G ET D +L Y +K S V P
Sbjct: 241 FESMYYAFRENGKETDFDRKALKFLVEYFTKVREKYSEYDVGMKSP 286
|
Length = 467 |
| >gnl|CDD|183341 PRK11858, aksA, trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Score = 54.8 bits (133), Expect = 2e-08
Identities = 34/126 (26%), Positives = 60/126 (47%), Gaps = 13/126 (10%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 61
+ A A + G + DT+G+ P TM ++++++ + + VHCH+ +G A AN L
Sbjct: 149 EFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIP-IEVHCHNDFGMATANAL 207
Query: 62 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVK---EIAVFASA 118
+E G +++ GLG R +GN A E++V L+ G+ +
Sbjct: 208 AGIEAGAKQVHTTVNGLG----ER--AGNAALEEVVMALK---YLYGIDLGIDTERLYEL 258
Query: 119 SEMFSK 124
S + SK
Sbjct: 259 SRLVSK 264
|
Length = 378 |
| >gnl|CDD|233719 TIGR02090, LEU1_arch, isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 7/101 (6%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
+KV + G I++ DT+GV TP M +++ + + ++VHCH+ +G A AN
Sbjct: 144 IKVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVKLP-ISVHCHNDFGLATANS 202
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 101
+ ++ G ++ G+G R GN A E++V L+
Sbjct: 203 IAGVKAGAEQVHVTVNGIG----ERA--GNAALEEVVMALK 237
|
Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by TIGR00973. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterized as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. Length = 363 |
| >gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 55.1 bits (133), Expect = 2e-08
Identities = 41/125 (32%), Positives = 63/125 (50%), Gaps = 16/125 (12%)
Query: 169 PPHNV---TRVATALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVIPADRLAVHC 222
P H + ++A + +MG I + D G+ TP + +++ +TV P L VH
Sbjct: 149 PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTV-P---LEVHT 204
Query: 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282
H T G A L A+E G + D++I+ P+A G S ATE +V L+ +G +TG
Sbjct: 205 HATSGIAEMTYLKAIEAGADIIDTAIS-----PFAGGTS-QPATESMVAALQDLGYDTGL 258
Query: 283 DLTSL 287
DL L
Sbjct: 259 DLEEL 263
|
Length = 448 |
| >gnl|CDD|183445 PRK12330, PRK12330, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 40/129 (31%), Positives = 58/129 (44%), Gaps = 18/129 (13%)
Query: 169 PPHNVT---RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI-----PADRLAV 220
P H V A L MG I + D + P D++ I R+ +
Sbjct: 150 PIHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAY----DIVKGIKEACGEDTRINL 205
Query: 221 HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280
HCH T G L +++ A+E G+ V D++I+ + P G+ TE LV MLEG G T
Sbjct: 206 HCHSTTGVTLVSLMKAIEAGVDVVDTAISSMSLGP------GHNPTESLVEMLEGTGYTT 259
Query: 281 GADLTSLLR 289
D+ LL+
Sbjct: 260 KLDMDRLLK 268
|
Length = 499 |
| >gnl|CDD|236493 PRK09389, PRK09389, (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-08
Identities = 58/222 (26%), Positives = 92/222 (41%), Gaps = 46/222 (20%)
Query: 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSE 140
C +AR D+ LE C V + + S++ + + T EE LE E
Sbjct: 69 CSFARAVKV-----DIDAALE-----CDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVE 118
Query: 141 VVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVA----TALYKMGCYEISLG----- 191
V A +G+ V + G E A +R LYK G I G
Sbjct: 119 AVEYAKDHGLIVE-----LSG---EDA------SRADLDFLKELYKAG---IEAGADRIC 161
Query: 192 --DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249
DT+G+ TP + + + ++ +++HCH+ +G A+AN L A+ G +I
Sbjct: 162 FCDTVGILTPEKTYELFKRLSELVKGP-VSIHCHNDFGLAVANTLAALAAGADQVHVTIN 220
Query: 250 GLGGCPYARGASGNVATEDLVYMLE-GMGIETGADLTSLLRT 290
G+G R +GN + E++V L+ +ETG L L
Sbjct: 221 GIG----ER--AGNASLEEVVMALKHLYDVETGIKLEELYEL 256
|
Length = 488 |
| >gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 33/114 (28%), Positives = 51/114 (44%), Gaps = 13/114 (11%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTP-GTMRL--MLEDVLTVIPADRLAVHCHDTYGQAL 57
+++A L +MG I + D G+ TP L ++ L V + +H H T G A
Sbjct: 159 VELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPV----PVELHTHATSGMAE 214
Query: 58 ANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKE 111
L A+E G+ D++I+ P + G S ATE +V L G G+
Sbjct: 215 MTYLKAVEAGVDGIDTAIS-----PLSGGTS-QPATETMVAALRGTGYDTGLDL 262
|
Length = 472 |
| >gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 3e-08
Identities = 35/118 (29%), Positives = 52/118 (44%), Gaps = 7/118 (5%)
Query: 176 VATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 235
+A L +MG I + D G+ TP L L + +H H T G A +L
Sbjct: 154 LAEELLEMGVDSICIKDMAGILTP-KAAYELVSALKKRFGLPVHLHSHATTGMAEMALLK 212
Query: 236 AMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHY 293
A+E G D++I+ + G + + TE +V L G G +TG D+ LL Y
Sbjct: 213 AIEAGADGIDTAISSMS------GGTSHPPTETMVAALRGTGYDTGLDIELLLEIAAY 264
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582 |
| >gnl|CDD|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 6e-08
Identities = 28/92 (30%), Positives = 48/92 (52%), Gaps = 7/92 (7%)
Query: 13 YEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAMEFGISVF 71
+ D+ G P ++ ++ + + + D +L H H+ ALAN L A+E G+ +
Sbjct: 153 DVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEII 212
Query: 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEGK 103
D+++ G+G RGA GN+ TE L+ L K
Sbjct: 213 DATVYGMG-----RGA-GNLPTELLLDYLNNK 238
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 266 |
| >gnl|CDD|163675 cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 9e-08
Identities = 31/105 (29%), Positives = 49/105 (46%), Gaps = 13/105 (12%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRL---MLEDVLTVIPADRLAVHCHDTYGQAL 57
+K+A L MG I + D G+ TP L+ + + + +H HDT G A+
Sbjct: 152 VKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVGLP----IHLHTHDTSGLAV 207
Query: 58 ANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 102
A L A E G+ + D++I+ L G + +TE +V L G
Sbjct: 208 ATYLAAAEAGVDIVDTAISPLSGG------TSQPSTESMVAALRG 246
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex. In addition to the catalytic domain, transcarboxylase 5S has several other domains including a carbamoyl-phosphate synthase domain, a biotin carboxylase domain, a carboxyltransferase domain, and an ATP-grasp domain. Pyruvate carboxylase, like TC, is a biotin-dependent enzyme that catalyzes the carboxylation of pyruvate to produce oxaloacetate. In mammals, PC has critical roles in gluconeogenesis, lipogenesis, glyceroneogenesis, and insulin secretion. Inherited PC deficiencies are linked to serious diseases in humans such as lactic acidemia, hypoglycemia, psychomotor retardation, and death. PC is a single-chain enzyme and is active only in its homotetrameric form. PC has three domains, an N-terminal biotin carboxylase domain, a carboxyltransferase domain (this alignment model), and a C-terminal biotin-carboxyl carrier protein domain. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 275 |
| >gnl|CDD|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 9e-08
Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 186 YEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAMEFGISVF 244
+ D+ G P ++ ++ + + + D +L H H+ ALAN L A+E G+ +
Sbjct: 153 DVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEII 212
Query: 245 DSSIAGLGGCPYARGASGNVATEDLVYMLE 274
D+++ G+G RGA GN+ TE L+ L
Sbjct: 213 DATVYGMG-----RGA-GNLPTELLLDYLN 236
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 266 |
| >gnl|CDD|234864 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Score = 53.2 bits (129), Expect = 9e-08
Identities = 54/188 (28%), Positives = 85/188 (45%), Gaps = 23/188 (12%)
Query: 112 IAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV--P 169
I F + S + + + + EE LE E V A + V S E A
Sbjct: 96 IHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE--FSA------EDATRTD 147
Query: 170 PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTY 226
+ RV A G I++ DT+G TP +++ + +P D+ ++VHCH+
Sbjct: 148 LDFLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDL 207
Query: 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML----EGMGIETGA 282
G A+AN L A+E G + +I G+G R +GN A E++V L + G+ETG
Sbjct: 208 GLAVANSLAAVEAGARQVECTINGIG----ER--AGNAALEEVVMALKTRKDIYGVETGI 261
Query: 283 DLTSLLRT 290
+ + RT
Sbjct: 262 NTEEIYRT 269
|
Length = 513 |
| >gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Score = 52.5 bits (127), Expect = 2e-07
Identities = 41/131 (31%), Positives = 60/131 (45%), Gaps = 16/131 (12%)
Query: 169 PPHNV---TRVATALYKMGCYEISLGDTIGVGTP-GTMRL--MLEDVLTVIPADRLAVHC 222
P H + +A L +MGC I + D G+ TP L L++ + +P +H
Sbjct: 149 PVHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQ---LHS 204
Query: 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282
H T G A L A+E G+ + D++I+ P A G S TE +V L+G +TG
Sbjct: 205 HCTSGLAPMTYLKAVEAGVDIIDTAIS-----PLAFGTS-QPPTESMVAALKGTPYDTGL 258
Query: 283 DLTSLLRTGHY 293
DL L Y
Sbjct: 259 DLELLFEIAEY 269
|
Length = 592 |
| >gnl|CDD|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 37/128 (28%), Positives = 58/128 (45%), Gaps = 7/128 (5%)
Query: 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTY 226
PP + A + G + + D+ G P +R + + V+ P ++ H H
Sbjct: 140 TPPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNL 199
Query: 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTS 286
A+AN + A+E G + D+S+ GLG GA GN E V +L+ +G TG DL
Sbjct: 200 SLAVANSIAAIEAGATRIDASLRGLGA-----GA-GNAPLEVFVAVLDRLGWNTGCDLFK 253
Query: 287 LLRTGHYI 294
L+ I
Sbjct: 254 LMDAAEDI 261
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated [Energy metabolism, Other]. Length = 333 |
| >gnl|CDD|178767 PLN03228, PLN03228, methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (123), Expect = 2e-07
Identities = 44/182 (24%), Positives = 74/182 (40%), Gaps = 24/182 (13%)
Query: 112 IAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPH 171
I F S S++ K + T EE +E + A + G+ GC G
Sbjct: 185 ILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYA-----KSLGFHDIQFGCEDGGRSDKE 239
Query: 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADR---LAVHCHDTYGQ 228
+ ++ K G + + DT+G+ P ++ V P +VHCH+ G
Sbjct: 240 FLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGL 299
Query: 229 ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV--------YMLEGM--GI 278
A AN + + G + +I G+G SGN + E++V Y++ G+ GI
Sbjct: 300 ATANTIAGICAGARQVEVTINGIG------ERSGNASLEEVVMALKCRGAYLMNGVYTGI 353
Query: 279 ET 280
+T
Sbjct: 354 DT 355
|
Length = 503 |
| >gnl|CDD|163685 cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 4e-07
Identities = 38/148 (25%), Positives = 69/148 (46%), Gaps = 11/148 (7%)
Query: 107 CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG 166
GV + + S + + +I E +E EV+ + GI VR S E
Sbjct: 83 TGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVR--FSS------ED 134
Query: 167 AV--PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
+ ++ RV A+ K+G + + DT+G+ TP + ++ + V+ D + H H+
Sbjct: 135 SFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCD-IEFHGHN 193
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLG 252
G A+AN A+E G + D+++ G+G
Sbjct: 194 DTGCAIANAYAALEAGATHIDTTVLGIG 221
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 262 |
| >gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 2e-06
Identities = 32/103 (31%), Positives = 49/103 (47%), Gaps = 13/103 (12%)
Query: 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD---RLAVHCHDTYGQALAN 59
+A L MG + + D G+ P ++++ I L +HCH T G + A
Sbjct: 160 LAKQLEDMGVDSLCIKDMAGLLKP----YAAYELVSRIKKRVDVPLHLHCHATTGLSTAT 215
Query: 60 ILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 102
+L A+E GI D++I+ + Y G+ ATE LV LEG
Sbjct: 216 LLKAIEAGIDGVDTAISSM-SMTY-----GHSATETLVATLEG 252
|
Length = 593 |
| >gnl|CDD|181282 PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 31/68 (45%), Positives = 39/68 (57%), Gaps = 6/68 (8%)
Query: 221 HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280
H H+ G +AN L A+E G + D S+AGLG GA GN E LV +L+ MG ET
Sbjct: 195 HGHNNLGLGVANSLAAVEAGATRIDGSLAGLG-----AGA-GNTPLEVLVAVLDRMGWET 248
Query: 281 GADLTSLL 288
G DL L+
Sbjct: 249 GVDLYKLM 256
|
Length = 337 |
| >gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 7e-06
Identities = 33/105 (31%), Positives = 52/105 (49%), Gaps = 13/105 (12%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTP-GTMRL--MLEDVLTVIPADRLAVHCHDTYGQAL 57
+++A L +MGC I + D G+ TP L L++ + +P +H H T G A
Sbjct: 157 VELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQ---LHSHCTSGLAP 212
Query: 58 ANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 102
L A+E G+ + D++I+ P A G S TE +V L+G
Sbjct: 213 MTYLKAVEAGVDIIDTAIS-----PLAFGTS-QPPTESMVAALKG 251
|
Length = 592 |
| >gnl|CDD|163683 cd07945, DRE_TIM_CMS, Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 9e-06
Identities = 38/153 (24%), Positives = 60/153 (39%), Gaps = 19/153 (12%)
Query: 108 GVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVR--------GYISCV 159
G K + + S + T EE EV+ A+ NGI V G
Sbjct: 87 GAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRD-- 144
Query: 160 VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA 219
P V ++ L + I L DT+G+ +P + D++ P
Sbjct: 145 ---------SPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFD 195
Query: 220 VHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252
H H+ Y A+AN+L A++ GI +++ GLG
Sbjct: 196 FHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLG 228
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 280 |
| >gnl|CDD|130046 TIGR00973, leuA_bact, 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 2e-05
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 9/102 (8%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA-DR--LAVHCHDTYGQALA 58
++ A G I++ DT+G P +++ + +P D+ L+VHCH+ G A+A
Sbjct: 150 RIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVA 209
Query: 59 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100
N L A++ G + +I G+G +GN A E++V L
Sbjct: 210 NSLAAVQNGARQVECTINGIG------ERAGNAALEEVVMAL 245
|
This is the first enzyme of leucine biosynthesis. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 494 |
| >gnl|CDD|163681 cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-05
Identities = 29/77 (37%), Positives = 40/77 (51%), Gaps = 9/77 (11%)
Query: 33 LEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVA 92
L + L P + H H+ G A+AN L A+E G + D S+AGLG GA GN
Sbjct: 179 LREALDPTP---VGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLG-----AGA-GNTP 229
Query: 93 TEDLVYMLEGKSMQCGV 109
E LV +LE ++ G+
Sbjct: 230 LEVLVAVLERMGIETGI 246
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 263 |
| >gnl|CDD|162728 TIGR02146, LysS_fung_arch, homocitrate synthase | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 20/79 (25%), Positives = 42/79 (53%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
+ + + G + + DT+G P + ++ V+ V+P + +H H+ G A+AN
Sbjct: 142 LSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANA 201
Query: 61 LTAMEFGISVFDSSIAGLG 79
A+E G ++ D+++ G+G
Sbjct: 202 YNAIEGGATIVDTTVLGIG 220
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. Length = 344 |
| >gnl|CDD|236493 PRK09389, PRK09389, (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 4e-05
Identities = 24/83 (28%), Positives = 45/83 (54%), Gaps = 7/83 (8%)
Query: 19 DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78
DT+G+ TP + + + ++ +++HCH+ +G A+AN L A+ G +I G+
Sbjct: 164 DTVGILTPEKTYELFKRLSELVKGP-VSIHCHNDFGLAVANTLAALAAGADQVHVTINGI 222
Query: 79 GGCPYARGASGNVATEDLVYMLE 101
G R +GN + E++V L+
Sbjct: 223 G----ER--AGNASLEEVVMALK 239
|
Length = 488 |
| >gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Score = 44.8 bits (106), Expect = 4e-05
Identities = 29/110 (26%), Positives = 46/110 (41%), Gaps = 7/110 (6%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
+ +A L +MG I + D G+ TP L L + +H H T G A +
Sbjct: 152 LDLAEELLEMGVDSICIKDMAGILTP-KAAYELVSALKKRFGLPVHLHSHATTGMAEMAL 210
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVK 110
L A+E G D++I+ + G + + TE +V L G G+
Sbjct: 211 LKAIEAGADGIDTAISSMS------GGTSHPPTETMVAALRGTGYDTGLD 254
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582 |
| >gnl|CDD|163685 cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
++V A+ K+G + + DT+G+ TP + ++ + V+ D + H H+ G A+AN
Sbjct: 144 LRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVSCD-IEFHGHNDTGCAIANA 202
Query: 61 LTAMEFGISVFDSSIAGLG 79
A+E G + D+++ G+G
Sbjct: 203 YAALEAGATHIDTTVLGIG 221
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 262 |
| >gnl|CDD|183445 PRK12330, PRK12330, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 5e-05
Identities = 32/107 (29%), Positives = 50/107 (46%), Gaps = 15/107 (14%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI-----PADRLAVHCHDTYGQ 55
++ A L MG I + D + P D++ I R+ +HCH T G
Sbjct: 158 VEQAKRLLDMGADSICIKDMAALLKPQPAY----DIVKGIKEACGEDTRINLHCHSTTGV 213
Query: 56 ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 102
L +++ A+E G+ V D++I+ + P G+ TE LV MLEG
Sbjct: 214 TLVSLMKAIEAGVDVVDTAISSMSLGP------GHNPTESLVEMLEG 254
|
Length = 499 |
| >gnl|CDD|234864 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Score = 44.3 bits (106), Expect = 5e-05
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 9/99 (9%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALA 58
+V A G I++ DT+G TP +++ + +P D+ ++VHCH+ G A+A
Sbjct: 153 RVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVA 212
Query: 59 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 97
N L A+E G + +I G+G R +GN A E++V
Sbjct: 213 NSLAAVEAGARQVECTINGIG----ER--AGNAALEEVV 245
|
Length = 513 |
| >gnl|CDD|163683 cd07945, DRE_TIM_CMS, Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-05
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 15 ISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 74
I L DT+G+ +P + D++ P H H+ Y A+AN+L A++ GI ++
Sbjct: 164 IMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTT 223
Query: 75 IAGLG 79
+ GLG
Sbjct: 224 VNGLG 228
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 280 |
| >gnl|CDD|163679 cd07941, DRE_TIM_LeuA3, Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 8e-05
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGT-PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALAN 59
+ A + G + L DT G GT P + ++++V +P L +H H+ G A+AN
Sbjct: 154 LATLKAAAEAGADWLVLCDTNG-GTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVAN 212
Query: 60 ILTAMEFGISVFDSSIAGLG 79
L A+E G + +I G G
Sbjct: 213 SLAAVEAGATQVQGTINGYG 232
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 273 |
| >gnl|CDD|130302 TIGR01235, pyruv_carbox, pyruvate carboxylase | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 1e-04
Identities = 62/271 (22%), Positives = 113/271 (41%), Gaps = 56/271 (20%)
Query: 52 TYGQALANILTAMEFGISVFDSSIAGLGGCPYAR------------------GASGNVAT 93
T AL N+ + +G + FD ++ L P+ R GA+G T
Sbjct: 561 TTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYT 620
Query: 94 ---EDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150
+++V ++ Q G+ VF S + + N+ ++ ++ +VV A+
Sbjct: 621 NYPDNVVKYFVKQAAQGGIDIFRVFDSLNWV---ENMRVGMD-AVAEAGKVVEAAI---- 672
Query: 151 RVRGYISCVVGCPYEGAVPPHNV---TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLE 207
C G + A P +++ T +A L K G + + + D G+ P +L+++
Sbjct: 673 -------CYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIK 725
Query: 208 DV--LTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD---SSIAGLGGCPYARGASG 262
+ T +P + H HDT G A+A++L A+E G+ V D S++GL P
Sbjct: 726 ALREKTDLP---IHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSGLTSQPSLGA--- 779
Query: 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHY 293
+V LEG + G ++ + Y
Sbjct: 780 ------IVAALEGSERDPGLNVAWIRELSAY 804
|
This enzyme plays a role in gluconeogensis but not glycolysis [Energy metabolism, Glycolysis/gluconeogenesis]. Length = 1143 |
| >gnl|CDD|163677 cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 2e-04
Identities = 20/78 (25%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 61
+ A + G + DT+G+ P T ++ + L H H+ G A AN L
Sbjct: 143 EFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLP-LEFHAHNDLGLATANTL 201
Query: 62 TAMEFGISVFDSSIAGLG 79
A+ G + ++ GLG
Sbjct: 202 AAVRAGATHVSVTVNGLG 219
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 259 |
| >gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVIPADRLAVHCHDTYGQALA 58
K+A + +MG I + D G+ TP + +++ +TV P L VH H T G A
Sbjct: 158 KLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTV-P---LEVHTHATSGIAEM 213
Query: 59 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCG-----VKEIA 113
L A+E G + D++I+ P+A G S ATE +V L+ G + EIA
Sbjct: 214 TYLKAIEAGADIIDTAIS-----PFAGGTS-QPATESMVAALQDLGYDTGLDLEELSEIA 267
|
Length = 448 |
| >gnl|CDD|178767 PLN03228, PLN03228, methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 6e-04
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADR---LAVHCHDTYGQALA 58
K+ K G + + DT+G+ P ++ V P +VHCH+ G A A
Sbjct: 243 KILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATA 302
Query: 59 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKS 104
N + + G + +I G+G SGN + E++V L+ +
Sbjct: 303 NTIAGICAGARQVEVTINGIG------ERSGNASLEEVVMALKCRG 342
|
Length = 503 |
| >gnl|CDD|163679 cd07941, DRE_TIM_LeuA3, Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-04
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 188 ISLGDTIGVGT-PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246
+ L DT G GT P + ++++V +P L +H H+ G A+AN L A+E G +
Sbjct: 168 LVLCDTNG-GTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQG 226
Query: 247 SIAGLG 252
+I G G
Sbjct: 227 TINGYG 232
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 273 |
| >gnl|CDD|233965 TIGR02660, nifV_homocitr, homocitrate synthase NifV | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 9e-04
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 7/84 (8%)
Query: 19 DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78
DT+G+ P + ++ + + L +H H+ G A AN L A+ G + ++++ GL
Sbjct: 163 DTVGILDPFSTYELVRALRQAVDLP-LEMHAHNDLGMATANTLAAVRAGATHVNTTVNGL 221
Query: 79 GGCPYARGASGNVATEDLVYMLEG 102
G R +GN A E++ L+
Sbjct: 222 G----ER--AGNAALEEVAMALKR 239
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 365 |
| >gnl|CDD|130050 TIGR00977, LeuA_rel, 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.001
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 19/156 (12%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV--------RGYI 156
++ + +F + ++ + T+EE+L + V+ G V GY
Sbjct: 91 IKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGY- 149
Query: 157 SCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD 216
A P + + +ATA + G + L DT G P + + V +
Sbjct: 150 ---------KANPEYALATLATAQ-QAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQP 199
Query: 217 RLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252
+L +H H+ G A+AN L A+E G ++ +I G G
Sbjct: 200 QLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYG 235
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases [Unknown function, General]. Length = 526 |
| >gnl|CDD|79056 PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (92), Expect = 0.001
Identities = 32/117 (27%), Positives = 56/117 (47%), Gaps = 11/117 (9%)
Query: 180 LYKMGCYEISLGDTIGVGTPGTMRLMLEDV--LTVIPADRLAVHCHDTYGQALANILTAM 237
L +MG I + D G+ TP + ++ + +T +P L VH H T G + L A+
Sbjct: 172 LVEMGADSICIKDMAGILTPKAAKELVSGIKAMTNLP---LIVHTHATSGISQMTYLAAV 228
Query: 238 EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYI 294
E G D++++ P++ G S ATE + L+ G + D T L + +++
Sbjct: 229 EAGADRIDTALS-----PFSEGTS-QPATESMYLALKEAGYDITLDETLLEQAANHL 279
|
Length = 468 |
| >gnl|CDD|130050 TIGR00977, LeuA_rel, 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Score = 38.7 bits (90), Expect = 0.003
Identities = 21/79 (26%), Positives = 36/79 (45%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
+ + + G + L DT G P + + V + +L +H H+ G A+AN
Sbjct: 157 LATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANS 216
Query: 61 LTAMEFGISVFDSSIAGLG 79
L A+E G ++ +I G G
Sbjct: 217 LLAVEAGATMVQGTINGYG 235
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases [Unknown function, General]. Length = 526 |
| >gnl|CDD|163684 cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Score = 38.1 bits (89), Expect = 0.004
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 19/98 (19%)
Query: 15 ISLGDTIGVGT-----------PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTA 63
I L DT+G G P + + +D +P++ L H H+ + +A+AN + A
Sbjct: 167 IRLCDTLGYGVPYPGASLPRSVPKIIYGLRKD--CGVPSENLEWHGHNDFYKAVANAVAA 224
Query: 64 MEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 101
+G S + ++ G+G R +GN E +V
Sbjct: 225 WLYGASWVNCTLLGIG----ER--TGNCPLEAMVIEYA 256
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 279 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 327 | |||
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 100.0 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 100.0 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 100.0 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 100.0 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 100.0 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 100.0 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 100.0 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 100.0 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 100.0 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 100.0 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 100.0 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 100.0 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 100.0 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 100.0 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 100.0 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 100.0 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 100.0 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 100.0 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 100.0 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 100.0 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| KOG2367|consensus | 560 | 100.0 | ||
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 100.0 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 100.0 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 100.0 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 100.0 | |
| KOG2368|consensus | 316 | 100.0 | ||
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 100.0 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 100.0 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 100.0 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 100.0 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 100.0 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 100.0 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 100.0 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 100.0 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 100.0 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 100.0 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 100.0 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 100.0 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 100.0 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 100.0 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 99.97 | |
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 99.95 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 99.95 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 99.95 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 99.94 | |
| KOG0369|consensus | 1176 | 99.94 | ||
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 99.92 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 99.92 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 99.91 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 99.91 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 99.9 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 99.9 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 99.9 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 99.9 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 99.9 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 99.9 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 99.9 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 99.9 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 99.89 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 99.89 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 99.89 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 99.89 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 99.89 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 99.89 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 99.89 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 99.89 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 99.89 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 99.88 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 99.88 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 99.88 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 99.88 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 99.88 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 99.87 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 99.87 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 99.87 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 99.87 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 99.87 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 99.86 | |
| KOG2368|consensus | 316 | 99.86 | ||
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 99.86 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 99.86 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 99.85 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 99.85 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 99.84 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 99.84 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 99.83 | |
| KOG2367|consensus | 560 | 99.68 | ||
| COG1038 | 1149 | PycA Pyruvate carboxylase [Energy production and c | 99.5 | |
| TIGR02146 | 344 | LysS_fung_arch homocitrate synthase. This model in | 99.48 | |
| KOG0369|consensus | 1176 | 99.32 | ||
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 98.02 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 97.81 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 97.76 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 97.74 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 97.66 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 97.6 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 97.59 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 97.55 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 97.5 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 97.41 | |
| PRK07094 | 323 | biotin synthase; Provisional | 97.39 | |
| PRK08445 | 348 | hypothetical protein; Provisional | 97.35 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 97.24 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 97.17 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 97.15 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 97.12 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 97.11 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 97.09 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 97.07 | |
| PRK08508 | 279 | biotin synthase; Provisional | 97.07 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 97.04 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 97.03 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 96.99 | |
| PLN02389 | 379 | biotin synthase | 96.94 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 96.89 | |
| PRK06256 | 336 | biotin synthase; Validated | 96.87 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 96.86 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 96.79 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 96.78 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 96.74 | |
| COG1060 | 370 | ThiH Thiamine biosynthesis enzyme ThiH and related | 96.72 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 96.69 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 96.66 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 96.62 | |
| PRK00115 | 346 | hemE uroporphyrinogen decarboxylase; Validated | 96.56 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 96.53 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 96.52 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 96.44 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 96.39 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 96.37 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 96.37 | |
| TIGR01464 | 338 | hemE uroporphyrinogen decarboxylase. This model re | 96.17 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 96.16 | |
| PRK15452 | 443 | putative protease; Provisional | 96.13 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 96.04 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 96.03 | |
| cd00717 | 335 | URO-D Uroporphyrinogen decarboxylase (URO-D) is a | 95.88 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 95.81 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 95.79 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 95.77 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 95.74 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 95.7 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 95.63 | |
| TIGR00538 | 455 | hemN oxygen-independent coproporphyrinogen III oxi | 95.58 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 95.58 | |
| COG0826 | 347 | Collagenase and related proteases [Posttranslation | 95.55 | |
| PRK15108 | 345 | biotin synthase; Provisional | 95.53 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 95.51 | |
| PRK13347 | 453 | coproporphyrinogen III oxidase; Provisional | 95.5 | |
| COG1891 | 235 | Uncharacterized protein conserved in archaea [Func | 95.43 | |
| PRK06252 | 339 | methylcobalamin:coenzyme M methyltransferase; Vali | 95.42 | |
| PRK09613 | 469 | thiH thiamine biosynthesis protein ThiH; Reviewed | 95.42 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 95.3 | |
| cd03465 | 330 | URO-D_like The URO-D _like protein superfamily inc | 95.3 | |
| TIGR00539 | 360 | hemN_rel putative oxygen-independent coproporphyri | 95.28 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 95.22 | |
| PRK05660 | 378 | HemN family oxidoreductase; Provisional | 94.98 | |
| PRK07379 | 400 | coproporphyrinogen III oxidase; Provisional | 94.97 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 94.95 | |
| PF01208 | 343 | URO-D: Uroporphyrinogen decarboxylase (URO-D); Int | 94.87 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 94.82 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 94.81 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 94.68 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 94.55 | |
| PRK09249 | 453 | coproporphyrinogen III oxidase; Provisional | 94.51 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 94.46 | |
| cd03307 | 326 | Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al | 94.46 | |
| TIGR01463 | 340 | mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi | 94.45 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 94.36 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 94.35 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 94.35 | |
| TIGR03470 | 318 | HpnH hopanoid biosynthesis associated radical SAM | 94.28 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 94.25 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 94.24 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 94.19 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 94.11 | |
| PLN02591 | 250 | tryptophan synthase | 94.05 | |
| TIGR00510 | 302 | lipA lipoate synthase. The family shows strong seq | 94.05 | |
| PRK08005 | 210 | epimerase; Validated | 94.01 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 93.99 | |
| cd03309 | 321 | CmuC_like CmuC_like. Proteins similar to the putat | 93.95 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 93.83 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 93.79 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 93.78 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 93.7 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 93.7 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 93.68 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 93.66 | |
| PRK08599 | 377 | coproporphyrinogen III oxidase; Provisional | 93.66 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 93.55 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 93.5 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 93.46 | |
| PRK08898 | 394 | coproporphyrinogen III oxidase; Provisional | 93.46 | |
| PRK09358 | 340 | adenosine deaminase; Provisional | 93.31 | |
| COG2089 | 347 | SpsE Sialic acid synthase [Cell envelope biogenesi | 93.27 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 93.16 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 93.1 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 93.07 | |
| PRK08207 | 488 | coproporphyrinogen III oxidase; Provisional | 92.98 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 92.94 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 92.94 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 92.85 | |
| cd00453 | 340 | FTBP_aldolase_II Fructose/tagarose-bisphosphate al | 92.83 | |
| PRK03620 | 303 | 5-dehydro-4-deoxyglucarate dehydratase; Provisiona | 92.74 | |
| PLN02417 | 280 | dihydrodipicolinate synthase | 92.72 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 92.72 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 92.71 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 92.65 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 92.63 | |
| PRK12928 | 290 | lipoyl synthase; Provisional | 92.61 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 92.6 | |
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 92.44 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 92.43 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 92.42 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 92.41 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 92.4 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 92.39 | |
| PRK09058 | 449 | coproporphyrinogen III oxidase; Provisional | 92.37 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 92.37 | |
| TIGR00126 | 211 | deoC deoxyribose-phosphate aldolase. Deoxyribose-p | 92.35 | |
| PRK08208 | 430 | coproporphyrinogen III oxidase; Validated | 92.29 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 92.29 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 92.22 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 92.2 | |
| PRK13209 | 283 | L-xylulose 5-phosphate 3-epimerase; Reviewed | 92.2 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 92.12 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 92.1 | |
| PRK00311 | 264 | panB 3-methyl-2-oxobutanoate hydroxymethyltransfer | 92.04 | |
| COG0407 | 352 | HemE Uroporphyrinogen-III decarboxylase [Coenzyme | 92.03 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 91.96 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 91.94 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 91.84 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 91.81 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 91.81 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 91.72 | |
| PLN02424 | 332 | ketopantoate hydroxymethyltransferase | 91.69 | |
| PF02679 | 244 | ComA: (2R)-phospho-3-sulfolactate synthase (ComA); | 91.69 | |
| PLN02428 | 349 | lipoic acid synthase | 91.67 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 91.63 | |
| PRK05481 | 289 | lipoyl synthase; Provisional | 91.62 | |
| PRK09856 | 275 | fructoselysine 3-epimerase; Provisional | 91.58 | |
| PRK05799 | 374 | coproporphyrinogen III oxidase; Provisional | 91.52 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 91.51 | |
| PF04551 | 359 | GcpE: GcpE protein; InterPro: IPR004588 This prote | 91.4 | |
| KOG3111|consensus | 224 | 91.36 | ||
| PRK08508 | 279 | biotin synthase; Provisional | 91.35 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 91.23 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 91.11 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 91.02 | |
| TIGR02313 | 294 | HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac | 91.01 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 90.98 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 90.93 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 90.92 | |
| PRK04147 | 293 | N-acetylneuraminate lyase; Provisional | 90.91 | |
| cd00954 | 288 | NAL N-Acetylneuraminic acid aldolase, also called | 90.9 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 90.89 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 90.72 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 90.69 | |
| COG0635 | 416 | HemN Coproporphyrinogen III oxidase and related Fe | 90.6 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 90.47 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 90.46 | |
| cd00952 | 309 | CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate | 90.43 | |
| COG0191 | 286 | Fba Fructose/tagatose bisphosphate aldolase [Carbo | 90.43 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 90.41 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 90.32 | |
| TIGR03700 | 351 | mena_SCO4494 putative menaquinone biosynthesis pro | 90.31 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 90.3 | |
| COG0329 | 299 | DapA Dihydrodipicolinate synthase/N-acetylneuramin | 90.3 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 90.28 | |
| PRK07094 | 323 | biotin synthase; Provisional | 90.25 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 90.16 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 90.14 | |
| PRK14340 | 445 | (dimethylallyl)adenosine tRNA methylthiotransferas | 90.1 | |
| cd06557 | 254 | KPHMT-like Ketopantoate hydroxymethyltransferase ( | 90.02 | |
| TIGR01290 | 442 | nifB nitrogenase cofactor biosynthesis protein Nif | 89.97 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 89.86 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 89.85 | |
| PRK01060 | 281 | endonuclease IV; Provisional | 89.79 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 89.74 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 89.73 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 89.7 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 89.64 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 89.62 | |
| PF00701 | 289 | DHDPS: Dihydrodipicolinate synthetase family; Inte | 89.61 | |
| COG2513 | 289 | PrpB PEP phosphonomutase and related enzymes [Carb | 89.6 | |
| PF01702 | 238 | TGT: Queuine tRNA-ribosyltransferase; InterPro: IP | 89.53 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 89.46 | |
| TIGR02109 | 358 | PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E. | 89.46 | |
| PRK06582 | 390 | coproporphyrinogen III oxidase; Provisional | 89.37 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 89.12 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 89.08 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 89.07 | |
| PRK05301 | 378 | pyrroloquinoline quinone biosynthesis protein PqqE | 88.92 | |
| PRK13533 | 487 | 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr | 88.86 | |
| COG0274 | 228 | DeoC Deoxyribose-phosphate aldolase [Nucleotide tr | 88.69 | |
| TIGR03586 | 327 | PseI pseudaminic acid synthase. | 88.66 | |
| PRK00366 | 360 | ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s | 88.57 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 88.52 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 88.5 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 88.46 | |
| PF02548 | 261 | Pantoate_transf: Ketopantoate hydroxymethyltransfe | 88.42 | |
| TIGR02990 | 239 | ectoine_eutA ectoine utilization protein EutA. Mem | 88.34 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 88.2 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 88.09 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 88.09 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 88.08 | |
| PRK14338 | 459 | (dimethylallyl)adenosine tRNA methylthiotransferas | 88.03 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 88.02 | |
| COG1242 | 312 | Predicted Fe-S oxidoreductase [General function pr | 88.0 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 87.94 | |
| TIGR02666 | 334 | moaA molybdenum cofactor biosynthesis protein A, b | 87.89 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 87.79 | |
| cd00465 | 306 | URO-D_CIMS_like The URO-D_CIMS_like protein superf | 87.63 | |
| PRK14334 | 440 | (dimethylallyl)adenosine tRNA methylthiotransferas | 87.61 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 87.56 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 87.54 | |
| TIGR01093 | 228 | aroD 3-dehydroquinate dehydratase, type I. Type II | 87.41 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 87.36 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 87.21 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 87.21 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 87.2 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 87.18 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 87.12 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 87.08 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 87.05 | |
| PRK09234 | 843 | fbiC FO synthase; Reviewed | 87.03 | |
| TIGR00683 | 290 | nanA N-acetylneuraminate lyase. N-acetylneuraminat | 86.98 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 86.81 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 86.67 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 86.58 | |
| PRK06294 | 370 | coproporphyrinogen III oxidase; Provisional | 86.51 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 86.4 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 86.29 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 86.23 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 86.13 | |
| TIGR00089 | 429 | RNA modification enzyme, MiaB family. This subfami | 85.98 | |
| PRK12677 | 384 | xylose isomerase; Provisional | 85.96 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 85.96 | |
| PRK14329 | 467 | (dimethylallyl)adenosine tRNA methylthiotransferas | 85.76 | |
| PRK08444 | 353 | hypothetical protein; Provisional | 85.68 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 85.64 | |
| PF03102 | 241 | NeuB: NeuB family; InterPro: IPR013132 NeuB is the | 85.6 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 85.49 | |
| cd01299 | 342 | Met_dep_hydrolase_A Metallo-dependent hydrolases, | 85.41 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 85.38 | |
| TIGR00674 | 285 | dapA dihydrodipicolinate synthase. Dihydrodipicoli | 85.24 | |
| PRK14456 | 368 | ribosomal RNA large subunit methyltransferase N; P | 85.14 | |
| TIGR03569 | 329 | NeuB_NnaB N-acetylneuraminate synthase. This famil | 85.12 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 85.03 | |
| TIGR03849 | 237 | arch_ComA phosphosulfolactate synthase. This model | 84.98 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 84.89 | |
| PRK13361 | 329 | molybdenum cofactor biosynthesis protein A; Provis | 84.84 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 84.84 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 84.82 | |
| PLN02591 | 250 | tryptophan synthase | 84.59 | |
| cd01320 | 325 | ADA Adenosine deaminase (ADA) is a monomeric zinc | 84.53 | |
| TIGR01579 | 414 | MiaB-like-C MiaB-like tRNA modifying enzyme. This | 84.52 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 84.52 | |
| TIGR01928 | 324 | menC_lowGC/arch o-succinylbenzoic acid (OSB) synth | 84.45 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 84.42 | |
| PRK03170 | 292 | dihydrodipicolinate synthase; Provisional | 84.31 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 84.3 | |
| PF02662 | 124 | FlpD: Methyl-viologen-reducing hydrogenase, delta | 84.23 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 84.18 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 84.07 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 84.07 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 84.05 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 84.03 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 83.94 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 83.9 | |
| PRK14332 | 449 | (dimethylallyl)adenosine tRNA methylthiotransferas | 83.82 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 83.79 | |
| PRK00112 | 366 | tgt queuine tRNA-ribosyltransferase; Provisional | 83.78 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 83.77 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 83.73 | |
| PRK14325 | 444 | (dimethylallyl)adenosine tRNA methylthiotransferas | 83.69 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 83.62 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 83.6 | |
| smart00518 | 273 | AP2Ec AP endonuclease family 2. These endonuclease | 83.59 | |
| smart00729 | 216 | Elp3 Elongator protein 3, MiaB family, Radical SAM | 83.57 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 83.44 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 83.44 | |
| cd00953 | 279 | KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas | 83.24 | |
| cd00950 | 284 | DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke | 83.22 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 83.15 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 83.11 | |
| PF05853 | 272 | DUF849: Prokaryotic protein of unknown function (D | 83.1 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 83.09 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 83.05 | |
| PRK14326 | 502 | (dimethylallyl)adenosine tRNA methylthiotransferas | 83.04 | |
| PRK05926 | 370 | hypothetical protein; Provisional | 83.0 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 82.98 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 82.58 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 82.32 | |
| PLN02433 | 345 | uroporphyrinogen decarboxylase | 82.31 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 82.21 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 82.17 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 82.13 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 81.9 | |
| PRK08446 | 350 | coproporphyrinogen III oxidase; Provisional | 81.89 | |
| TIGR01212 | 302 | radical SAM protein, TIGR01212 family. This unchar | 81.85 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 81.84 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 81.8 | |
| PRK06252 | 339 | methylcobalamin:coenzyme M methyltransferase; Vali | 81.56 | |
| PRK06245 | 336 | cofG FO synthase subunit 1; Reviewed | 81.54 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 81.45 | |
| PRK02048 | 611 | 4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha | 81.37 | |
| TIGR03249 | 296 | KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh | 81.37 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 81.35 | |
| PLN02951 | 373 | Molybderin biosynthesis protein CNX2 | 81.32 | |
| cd06556 | 240 | ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup | 81.27 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 81.15 | |
| PRK05927 | 350 | hypothetical protein; Provisional | 80.95 | |
| PRK14337 | 446 | (dimethylallyl)adenosine tRNA methylthiotransferas | 80.95 | |
| cd02072 | 128 | Glm_B12_BD B12 binding domain of glutamate mutase | 80.93 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 80.86 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 80.86 | |
| PRK00164 | 331 | moaA molybdenum cofactor biosynthesis protein A; R | 80.85 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 80.84 | |
| cd02068 | 127 | radical_SAM_B12_BD B12 binding domain_like associa | 80.84 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 80.81 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 80.72 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 80.67 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 80.66 | |
| COG2100 | 414 | Predicted Fe-S oxidoreductase [General function pr | 80.57 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 80.54 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 80.53 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 80.36 | |
| PTZ00413 | 398 | lipoate synthase; Provisional | 80.22 | |
| cd00951 | 289 | KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also | 80.22 | |
| PF04273 | 110 | DUF442: Putative phosphatase (DUF442); InterPro: I | 80.1 | |
| cd03307 | 326 | Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al | 80.08 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 80.03 |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-50 Score=372.16 Aligned_cols=202 Identities=64% Similarity=1.101 Sum_probs=197.0
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
++++++|++.++++.+.|+.|.+.|++++++|.+++++++++++|+.|+++.++++++|+||++++++++++.++++++.
T Consensus 86 e~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (287)
T PRK05692 86 EAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLF 165 (287)
T ss_pred HHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCC
Q psy12516 182 KMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 261 (327)
Q Consensus 182 ~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~ 261 (327)
++|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|||||||++||+
T Consensus 166 ~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpfa~g~a 245 (287)
T PRK05692 166 ALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYAPGAS 245 (287)
T ss_pred HcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCCCCCcc
Confidence 99999999999999999999999999999999888999999999999999999999999999999999999999999999
Q ss_pred CCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC
Q psy12516 262 GNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN 303 (327)
Q Consensus 262 Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~ 303 (327)
||+++|+++.+|+..|+++++|+++|.++++++++.+++++|
T Consensus 246 GN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~ 287 (287)
T PRK05692 246 GNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287 (287)
T ss_pred ccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999886
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-50 Score=373.37 Aligned_cols=207 Identities=65% Similarity=1.072 Sum_probs=200.9
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++++|++.++++.+.|+.|.+.|++++++|.++++.++++++++.|+++.++++++|+|||+++.+++++.++++++.+
T Consensus 129 ~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~ 208 (347)
T PLN02746 129 AAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYD 208 (347)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|..+|++|+|||+|||+||+++|+++|+++||+|++||||||||+||+|
T Consensus 209 ~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGecPfa~graG 288 (347)
T PLN02746 209 MGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGCPYAKGASG 288 (347)
T ss_pred cCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCCCCCCCCCC
Confidence 99999999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCChhhhhc
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (327)
|+++|+++.+|+.+|+++++|+++|.++++++++.+|+++|+.+.+.
T Consensus 289 N~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~~~~ 335 (347)
T PLN02746 289 NVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAVA 335 (347)
T ss_pred ChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999876654
|
|
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-50 Score=378.95 Aligned_cols=244 Identities=23% Similarity=0.351 Sum_probs=217.3
Q ss_pred HcCCcEEEecccCCCCCCCCCCc-------------cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCCh
Q psy12516 65 EFGISVFDSSIAGLGGCPYARGA-------------SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTI 131 (327)
Q Consensus 65 ~aG~~~id~~~~glg~~p~~~~~-------------~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ 131 (327)
++|++.||+++..+++.+|+..+ .++...+++ +.+.++|++.++++.+.|+.|.+.++++++
T Consensus 34 ~~Gv~~IEvG~p~~~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di-----~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~ 108 (365)
T TIGR02660 34 EAGVDELEVGIPAMGEEERAVIRAIVALGLPARLMAWCRARDADI-----EAAARCGVDAVHISIPVSDLQIEAKLRKDR 108 (365)
T ss_pred HcCCCEEEEeCCCCCHHHHHHHHHHHHcCCCcEEEEEcCCCHHHH-----HHHHcCCcCEEEEEEccCHHHHHHHhCcCH
Confidence 45667777766666554431110 122344444 245678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
+|.++++.++++++++.|+++. |++++.+|++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++
T Consensus 109 ~e~l~~~~~~i~~ak~~g~~v~------~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~ 182 (365)
T TIGR02660 109 AWVLERLARLVSFARDRGLFVS------VGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQ 182 (365)
T ss_pred HHHHHHHHHHHHHHHhCCCEEE------EeecCCCCCCHHHHHHHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999886 5578889999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHH-HhCCCCCCCChhhHHHH
Q psy12516 212 VIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML-EGMGIETGADLTSLLRT 290 (327)
Q Consensus 212 ~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l-~~~g~~~~~d~~~l~~~ 290 (327)
.++ ++|++|+|||+|||+||+++|+++||++||+|++|||| |+||++||+++.+| ..+|+++++|+++|.++
T Consensus 183 ~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe------raGN~~lE~lv~~L~~~~g~~~~idl~~l~~~ 255 (365)
T TIGR02660 183 AVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE------RAGNAALEEVAMALKRLLGRDTGIDTSRLPAL 255 (365)
T ss_pred hcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc------ccccCCHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 886 79999999999999999999999999999999999999 99999999999999 56999999999999999
Q ss_pred HHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 291 GHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 291 ~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
++++++.+++++| |++|+++|+||| +|||.+|||||
T Consensus 256 s~~v~~~~~~~~~~~~p~vG~~~f~h~sGiH~~~i~k~~~~Ye~~~ 301 (365)
T TIGR02660 256 SQLVARASGRPIPPQKPVVGESVFTHESGIHVDGLLKDPRTYEPFD 301 (365)
T ss_pred HHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccCCCcC
Confidence 9999999999987 589999999997 99999999996
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=379.58 Aligned_cols=211 Identities=27% Similarity=0.418 Sum_probs=201.5
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.+++++++|+++++.++++++++.|++|.+ ++++.+|++++++.++++.+.+
T Consensus 83 ~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~------~~ed~~r~~~~~l~~~~~~~~~ 156 (378)
T PRK11858 83 ASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSF------SAEDASRTDLDFLIEFAKAAEE 156 (378)
T ss_pred HHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEE------EeccCCCCCHHHHHHHHHHHHh
Confidence 4467899999999999999999999999999999999999999999999873 4678889999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+ +++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 157 ~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe------raG 229 (378)
T PRK11858 157 AGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE------RAG 229 (378)
T ss_pred CCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc------ccc
Confidence 9999999999999999999999999999988 579999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHH-hCCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLE-GMGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~-~~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||+++.+|+ .+|+++++|+++|.++++++++++++++| |+||+++|+||+ +|||.+||||+
T Consensus 230 Na~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~h~sGiH~~gi~k~~~~Ye~~~ 304 (378)
T PRK11858 230 NAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFAHESGIHVDGVLKNPLTYEPFL 304 (378)
T ss_pred CccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhhhhccccHHHHhCCcccccccC
Confidence 999999999999 58999999999999999999999999988 689999999997 99999999996
|
|
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=370.09 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=201.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
++.++|++.++++.++|+.|.+.+++++++|.++++.+.++++++.|+++.+.++ +.+|++++++.++++++.+
T Consensus 79 ~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~~~~~ 152 (363)
T TIGR02090 79 KAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFKRAEE 152 (363)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999999999999875544 4568999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 153 ~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe------raG 225 (363)
T TIGR02090 153 AGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE------RAG 225 (363)
T ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc------ccc
Confidence 99999999999999999999999999999888 79999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEG-MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~-~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||+++.+|+. +|+++++|+++|.++++++++++++++| |++|+++|+||+ +|||.+||||+
T Consensus 226 N~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~h~sGiH~~~i~k~~~~Ye~~~ 300 (363)
T TIGR02090 226 NAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFAHESGIHVDGVIENPLTYEPIS 300 (363)
T ss_pred cccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHHHhcchhHHHHcCCcccCCCCC
Confidence 9999999999997 8999999999999999999999999987 589999999997 99999999996
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=347.81 Aligned_cols=194 Identities=62% Similarity=1.032 Sum_probs=188.9
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++++|++.++++.+.|+.|.+.++++++++.++++.+.++++|+.|+++.++++++|+||++++++++++.++++++.+
T Consensus 81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~ 160 (274)
T cd07938 81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD 160 (274)
T ss_pred HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|||+|||+++|+|
T Consensus 161 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraG 240 (274)
T cd07938 161 LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATG 240 (274)
T ss_pred cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccC
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~ 296 (327)
|+++|+++.+|+..|+++++|+++|.++++++++
T Consensus 241 N~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~ 274 (274)
T cd07938 241 NVATEDLVYMLEGMGIETGIDLDKLLAAARWISE 274 (274)
T ss_pred CcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999863
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-48 Score=379.20 Aligned_cols=213 Identities=26% Similarity=0.359 Sum_probs=202.7
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+...++|.+.++++.+.|+.|.+.+++++++|+++++.+.++++++.|++|. |++||.+|++++++.++++.+.
T Consensus 86 ~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~------f~~ed~~r~d~~~l~~~~~~~~ 159 (513)
T PRK00915 86 EALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE------FSAEDATRTDLDFLCRVVEAAI 159 (513)
T ss_pred HHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeCCCCCCCHHHHHHHHHHHH
Confidence 3445788999999999999999999999999999999999999999999985 6688889999999999999999
Q ss_pred HcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCC
Q psy12516 182 KMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYAR 258 (327)
Q Consensus 182 ~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~ 258 (327)
++|+++|+||||+|.++|.+++++++.+++.+|. ++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 160 ~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~GlGE----- 234 (513)
T PRK00915 160 DAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE----- 234 (513)
T ss_pred HcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeecccc-----
Confidence 9999999999999999999999999999999885 79999999999999999999999999999999999999
Q ss_pred CCCCCccHHHHHHHHHhC----CCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccC
Q psy12516 259 GASGNVATEDLVYMLEGM----GIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYAN 324 (327)
Q Consensus 259 g~~Gn~~~e~~~~~l~~~----g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~ 324 (327)
|+||++||+++.+|+.. |+++++|+++|.++++++++++++++| |+||+++|+||+ +|||.+|||
T Consensus 235 -RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~h~sGiH~dgi~k~~~~Ye~ 313 (513)
T PRK00915 235 -RAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFAHESGIHQDGVLKNRETYEI 313 (513)
T ss_pred -cccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHHhccchhHHHHcCCcccccc
Confidence 99999999999999753 999999999999999999999999987 589999999997 999999999
Q ss_pred CC
Q psy12516 325 FD 326 (327)
Q Consensus 325 ~~ 326 (327)
|+
T Consensus 314 ~~ 315 (513)
T PRK00915 314 MT 315 (513)
T ss_pred cC
Confidence 96
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=371.70 Aligned_cols=211 Identities=24% Similarity=0.343 Sum_probs=199.4
Q ss_pred hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 104 ~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
..+.+.+.+.++.+.|+.|.+.+++++++|+++++.+++++|++.|++ + .|++||.+|++++++.++++.+.+
T Consensus 177 ~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v------~f~~EDa~Rtd~efl~~~~~~a~~ 250 (503)
T PLN03228 177 LKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDI------QFGCEDGGRSDKEFLCKILGEAIK 250 (503)
T ss_pred hcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceE------EeccccccccCHHHHHHHHHHHHh
Confidence 334477889999999999999999999999999999999999999986 4 378999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcC---CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
+|+++|+|+||+|.++|.+++++++.+++.+| +++|++|+|||+|||+||+++|+++||++||+|++||||
T Consensus 251 ~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~GiGE------ 324 (503)
T PLN03228 251 AGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGIGE------ 324 (503)
T ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEecccccc------
Confidence 99999999999999999999999999999886 478999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHh------CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCcc
Q psy12516 260 ASGNVATEDLVYMLEG------MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYA 323 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~------~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~ 323 (327)
|+||+++|+++.+|+. .|+++++|++.|.++++++++++++++| |+||.++|+||+ +|||.+||
T Consensus 325 RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~naF~heSGIH~dgilK~p~tYe 404 (503)
T PLN03228 325 RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANCFVHESGIHQDGILKNRSTYE 404 (503)
T ss_pred ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHhccchhHHHHhCCccccc
Confidence 9999999999999987 4889999999999999999999999987 589999999997 99999999
Q ss_pred CCC
Q psy12516 324 NFD 326 (327)
Q Consensus 324 ~~~ 326 (327)
||+
T Consensus 405 ~~~ 407 (503)
T PLN03228 405 ILS 407 (503)
T ss_pred CCC
Confidence 997
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-46 Score=365.69 Aligned_cols=211 Identities=24% Similarity=0.368 Sum_probs=200.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.+++++++|.++.+.+.++++++.|++|... .++.+|++++++.++++.+.+
T Consensus 81 ~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~~~~~ 154 (488)
T PRK09389 81 AALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS------GEDASRADLDFLKELYKAGIE 154 (488)
T ss_pred HHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE------EeeCCCCCHHHHHHHHHHHHh
Confidence 45668999999999999999999999999999999999999999999998754 345679999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++..+ ++|++|+|||+|||+||+++|+++||++||+|++|+|| |+|
T Consensus 155 ~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE------RaG 227 (488)
T PRK09389 155 AGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE------RAG 227 (488)
T ss_pred CCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc------ccc
Confidence 99999999999999999999999999998876 69999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEG-MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~-~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||+++++|+. +|+++++|+++|.++++++++++++++| |+||+++|+||+ +|||.+|||||
T Consensus 228 Na~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~~ 302 (488)
T PRK09389 228 NASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFAHESGIHVDGLLKDTETYEPIT 302 (488)
T ss_pred CccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhcchhhHHHHhCCcccCCCCC
Confidence 9999999999997 6999999999999999999999999998 589999999997 99999999997
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-46 Score=366.46 Aligned_cols=211 Identities=26% Similarity=0.390 Sum_probs=200.0
Q ss_pred hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 104 ~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
....+.+.++++.+.|+.|.+.+++++++|.++++.+.++++++.|..|. |++||.+|++++++.++++.+.++
T Consensus 85 l~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------f~~Ed~~r~d~~~l~~~~~~~~~~ 158 (494)
T TIGR00973 85 LKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVE------FSCEDAGRTEIPFLARIVEAAINA 158 (494)
T ss_pred ccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EEcCCCCCCCHHHHHHHHHHHHHc
Confidence 34557888999999999999999999999999999999999999999875 678899999999999999999999
Q ss_pred CcCEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCC
Q psy12516 184 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGA 260 (327)
Q Consensus 184 g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~ 260 (327)
|+++|+||||+|.++|.+++++++.+++.+|. ++|++|+|||+|||+||+++|+++||++||+|++|+|| |
T Consensus 159 Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~GlGE------R 232 (494)
T TIGR00973 159 GATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIGE------R 232 (494)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecccc------c
Confidence 99999999999999999999999999999873 67999999999999999999999999999999999999 9
Q ss_pred CCCccHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 261 SGNVATEDLVYMLEG----MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~----~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
+||++||+++++|+. +|+++++|++.|.++++++++++|+++| |+||+++|+|++ +|||.+|||||
T Consensus 233 aGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF~h~sGiH~dgi~k~~~~Ye~~~ 312 (494)
T TIGR00973 233 AGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAFAHESGIHQDGVLKNKETYEIMS 312 (494)
T ss_pred ccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHHhccchhHHHHhCCcccccCCC
Confidence 999999999999974 5899999999999999999999999987 589999999997 99999999997
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-46 Score=370.63 Aligned_cols=206 Identities=21% Similarity=0.326 Sum_probs=195.1
Q ss_pred cchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE
Q psy12516 109 VKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE 187 (327)
Q Consensus 109 id~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~ 187 (327)
...++++.+.|+.|++.+++++++|+++.+.+.++++++.|.. |. |++||++|++++++.++++.+.++|+++
T Consensus 183 ~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~------fs~EDa~rtd~d~l~~~~~~a~~aGa~~ 256 (632)
T PLN02321 183 RPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVE------FSPEDAGRSDPEFLYRILGEVIKAGATT 256 (632)
T ss_pred CCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------EecccCCCCCHHHHHHHHHHHHHcCCCE
Confidence 3468899999999999999999999999999999999999984 43 7789999999999999999999999999
Q ss_pred EEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCc
Q psy12516 188 ISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNV 264 (327)
Q Consensus 188 i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~ 264 (327)
|+|+||+|.++|.+++++++.+++.+|. ++|++|+|||+|||+||+++|+++||++||+|++|+|| |+||+
T Consensus 257 I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGlGE------RaGNa 330 (632)
T PLN02321 257 LNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGIGE------RAGNA 330 (632)
T ss_pred EEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc------cccCc
Confidence 9999999999999999999999999874 56999999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHHh------CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 265 ATEDLVYMLEG------MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 265 ~~e~~~~~l~~------~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
+||+++++|+. +|+.+++|+++|.++++++++++|+++| |+||+++|+||+ +|||.+|||||
T Consensus 331 ~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~v~~~kPiVG~naFaheSGIH~dgvlk~~~tYe~i~ 408 (632)
T PLN02321 331 SLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQVQPHKAIVGANAFAHESGIHQDGMLKHKGTYEIIS 408 (632)
T ss_pred cHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcCCCCCcccccccceehhcCccHHHHccCcccccccC
Confidence 99999999975 5689999999999999999999999987 589999999997 99999999996
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-46 Score=367.30 Aligned_cols=211 Identities=20% Similarity=0.272 Sum_probs=198.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC---CCCCCChHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCP---YEGAVPPHNVTRVATA 179 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~---~~~r~~~e~l~~~~~~ 179 (327)
...++|++.++++.+.|+.|.+.+++++++|.++++.+.++++++.|.+|. |+++ +.+|++++++.++++.
T Consensus 93 ~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~------~~~e~~~Da~r~d~~~l~~~~~~ 166 (524)
T PRK12344 93 ALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI------FDAEHFFDGYKANPEYALATLKA 166 (524)
T ss_pred HHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE------EccccccccccCCHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999987 4445 5679999999999999
Q ss_pred HHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 180 LYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 180 ~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
+.++|+++|+|+||+|.++|.+++++++.+++.+ +++|++|+|||+|||+||+++|+++||++||+|++|+||
T Consensus 167 ~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGE------ 239 (524)
T PRK12344 167 AAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGE------ 239 (524)
T ss_pred HHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc------
Confidence 9999999999999999999999999999999988 579999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHh-CCC--CCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 260 ASGNVATEDLVYMLEG-MGI--ETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~-~g~--~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|+||++||+++++|+. .|+ ++++|+++|.++++++++++++++| |+||+++|+||| +|||.+|||||
T Consensus 240 RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~h~SGiH~dgi~k~~~~Ye~~~ 319 (524)
T PRK12344 240 RCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFAHKGGIHVSAVLKDPRTYEHID 319 (524)
T ss_pred cccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhhhhccccHHHHhCCcccccCCC
Confidence 9999999999999974 674 4799999999999999999999987 589999999997 99999999996
|
|
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-45 Score=351.74 Aligned_cols=212 Identities=30% Similarity=0.454 Sum_probs=199.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
..++++++.+++|.++|+.|.+.++++++++.++.+.+.++||++.|+++... +++.+|++++++.++++.+.+
T Consensus 84 a~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~------~Ed~~rt~~~~l~~~~~~~~~ 157 (409)
T COG0119 84 ALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRFS------AEDATRTDPEFLAEVVKAAIE 157 (409)
T ss_pred HHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEE------eeccccCCHHHHHHHHHHHHH
Confidence 56778999999999999999999999999999999999999999999888743 455679999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 261 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~ 261 (327)
+|+++|+++||+|.++|.+++++++.+++.+| ..+|++|||||+|||+||+++|+++||++||+|++|+|| |+
T Consensus 158 ~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGE------Ra 231 (409)
T COG0119 158 AGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGE------RA 231 (409)
T ss_pred cCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEeccccee------cc
Confidence 99999999999999999999999999999998 489999999999999999999999999999999999999 99
Q ss_pred CCccHHHHHHHHHh---CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 262 GNVATEDLVYMLEG---MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 262 Gn~~~e~~~~~l~~---~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
||+++|+++.+|.. +|+++++|+++|.++++++++.++.++| |+||+++|+|++ +|||++|||++
T Consensus 232 Gna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFah~sGIH~dgvlkn~~tYE~i~ 309 (409)
T COG0119 232 GNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFAHESGIHQDGVLKNPETYEPID 309 (409)
T ss_pred ccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHHhhcchhHHHHhhCHhhcCCCC
Confidence 99999999965543 7789999999999999999999999776 589999999996 99999999986
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=361.13 Aligned_cols=215 Identities=19% Similarity=0.254 Sum_probs=200.4
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
...+++.+.++++.+.|+.|.+.+++++++|+++.+.+.++++++.|.+|....+. | .|.+|++++++.++++.+.+
T Consensus 89 a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~-f--~D~~r~~~~~l~~~~~~a~~ 165 (526)
T TIGR00977 89 ALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEH-F--FDGYKANPEYALATLATAQQ 165 (526)
T ss_pred HHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeee-e--eecccCCHHHHHHHHHHHHh
Confidence 45678889999999999999999999999999999999999999999998744333 2 14568999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|..+|++|+|||+|||+||+++|+++||++||+|++|+|| |+|
T Consensus 166 aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiGE------RaG 239 (526)
T TIGR00977 166 AGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYGE------RCG 239 (526)
T ss_pred CCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccC------ccC
Confidence 99999999999999999999999999999998767999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHh-CCCC--CCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEG-MGIE--TGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~-~g~~--~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||++++.|.. +|++ +++|+++|.++++++++++++++| |+||+++|+||| +|||.+|||||
T Consensus 240 Na~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~h~sGiH~dgi~k~~~~Ye~~~ 316 (526)
T TIGR00977 240 NANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFAHKGGVHVSAVQRNPFTYEHIA 316 (526)
T ss_pred CCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceeeeeccccHHHHhCCccccccCC
Confidence 9999999999974 7887 689999999999999999999987 589999999997 99999999997
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=352.17 Aligned_cols=215 Identities=14% Similarity=0.090 Sum_probs=195.6
Q ss_pred ccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE-EEEEeeeccCCCCCCCChHHHHHHHHHHHH--
Q psy12516 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV-RGYISCVVGCPYEGAVPPHNVTRVATALYK-- 182 (327)
Q Consensus 106 ~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v-~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~-- 182 (327)
..+.+.++++.++|+.|++.+++++++|+++++.++++++++.|... ...+...|+.+|.+|++++++.++++.+.+
T Consensus 119 ~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDasR~d~~~l~~~~~~a~~~~ 198 (552)
T PRK03739 119 GAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESFTGTELDFALEVCDAVIDVW 198 (552)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccCCCCCHHHHHHHHHHHHHhh
Confidence 34455789999999999999999999999999999999999988421 111334577889999999999999999886
Q ss_pred -cCcC---EEEecCCCCccCHHHHHHHHHHHHHhcC---CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCC
Q psy12516 183 -MGCY---EISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCP 255 (327)
Q Consensus 183 -~g~~---~i~l~Dt~G~~~P~~~~~~~~~~~~~~~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p 255 (327)
.|++ +|.|+||+|.++|.++++++..+++.+| +++|++|+|||+|||+||+++|+++||++||+|++|+||
T Consensus 199 ~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~gtvnG~GE-- 276 (552)
T PRK03739 199 QPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVEGCLFGNGE-- 276 (552)
T ss_pred cCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEeeCCcCcc--
Confidence 4554 5999999999999999999999999887 678999999999999999999999999999999999999
Q ss_pred CCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCcc-----
Q psy12516 256 YARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLE----- 320 (327)
Q Consensus 256 ~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~----- 320 (327)
|+||++||+++.+|+.+|+++++|+++|.++++++++++|+++| |+||+++|+||+ +|||.
T Consensus 277 ----RaGNa~le~vv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~hesGiH~dgilk~~~~~~~~ 352 (552)
T PRK03739 277 ----RTGNVDLVTLALNLYTQGVDPGLDFSDIDEIRRTVEYCNQLPVHPRHPYAGDLVFTAFSGSHQDAIKKGFAAQKAD 352 (552)
T ss_pred ----cccChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhhhhhccchhHHHHhcCchhcccc
Confidence 99999999999999889999999999999999999999999987 589999999997 99988
Q ss_pred ------CccCCC
Q psy12516 321 ------SYANFD 326 (327)
Q Consensus 321 ------~y~~~~ 326 (327)
+|||||
T Consensus 353 ~~~~~~~Ye~~~ 364 (552)
T PRK03739 353 AIVWEVPYLPID 364 (552)
T ss_pred cccccccccccC
Confidence 899997
|
|
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=353.87 Aligned_cols=215 Identities=17% Similarity=0.133 Sum_probs=197.0
Q ss_pred ccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE----eeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI----SCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 106 ~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l----~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
..+.+.++++.++|+.|.+.+++++++|+++.+.+.++++++.|.++..++ ...|+.++.+|.+++++.++++.+.
T Consensus 115 ~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~ 194 (564)
T TIGR00970 115 GAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVK 194 (564)
T ss_pred CCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHH
Confidence 344457999999999999999999999999999999999999987544332 2346677888999999999999999
Q ss_pred HcCc------CEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 182 KMGC------YEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 182 ~~g~------~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
++|+ ++|+|+||+|.++|.++++++..+++.+|. ++|++|+|||+|||+||+++|+++||++||+|++|+|
T Consensus 195 ~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~gt~~G~G 274 (564)
T TIGR00970 195 EVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIEGCLFGNG 274 (564)
T ss_pred HhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEEeecCcCC
Confidence 9987 499999999999999999999999988764 4699999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCcc--
Q psy12516 253 GCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLE-- 320 (327)
Q Consensus 253 ~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~-- 320 (327)
| |+||++||+++++|+.+|+++++|++.|.++++++++++++++| |+||+++|+|+| +|||.
T Consensus 275 E------RaGNa~le~lv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~h~SGiH~dai~K~~~~~ 348 (564)
T TIGR00970 275 E------RTGNVDLVTLALNLYTQGVSPNLDFSNLDEIRRTVEYCNKIPVHERHPYGGDLVYTAFSGSHQDAINKGLDAM 348 (564)
T ss_pred c------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhhhHhhhccchhHHHHhcCchhh
Confidence 9 99999999999999999999999999999999999999999987 589999999997 89976
Q ss_pred -------------CccCCC
Q psy12516 321 -------------SYANFD 326 (327)
Q Consensus 321 -------------~y~~~~ 326 (327)
+|||||
T Consensus 349 ~~~~~~~~~~~~~~Ye~~~ 367 (564)
T TIGR00970 349 KLDAAAADMLWQVPYLPLD 367 (564)
T ss_pred cccccccccccccccccCC
Confidence 999996
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=317.26 Aligned_cols=194 Identities=24% Similarity=0.333 Sum_probs=186.6
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.++|++++|.++++.++++++++.|+++.+++++ |+||+ |.+++++.++++++.+
T Consensus 82 ~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~--r~~~~~~~~~~~~~~~ 158 (280)
T cd07945 82 WIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGM--RDSPDYVFQLVDFLSD 158 (280)
T ss_pred HHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCC--cCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999998 88887 7899999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 159 ~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe------~aG 232 (280)
T cd07945 159 LPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE------RAG 232 (280)
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc------ccc
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHH-hCCCCCCCChhhHHHHHHHHHHhcCCCCChh
Q psy12516 263 NVATEDLVYMLE-GMGIETGADLTSLLRTGHYICGKLKKPSNSK 305 (327)
Q Consensus 263 n~~~e~~~~~l~-~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~ 305 (327)
|++||+++.+|+ ++|+++++|+++|.++++++++.+|+++|+.
T Consensus 233 N~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~ 276 (280)
T cd07945 233 NAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPAN 276 (280)
T ss_pred CccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCC
Confidence 999999999996 4899999999999999999999999999863
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-42 Score=312.59 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=189.9
Q ss_pred HcCCcEEEecccCCCCCCCCCCc-------------cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCCh
Q psy12516 65 EFGISVFDSSIAGLGGCPYARGA-------------SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTI 131 (327)
Q Consensus 65 ~aG~~~id~~~~glg~~p~~~~~-------------~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ 131 (327)
++|++.||+++..+++.+|+..+ ..+...+++ +.+.++|++.++++.+.|+.|.+.++|+++
T Consensus 31 ~~Gv~~iE~g~p~~~~~~~e~~~~l~~~~~~~~~~~~~r~~~~~v-----~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~ 105 (259)
T cd07939 31 EAGVDEIEVGIPAMGEEEREAIRAIVALGLPARLIVWCRAVKEDI-----EAALRCGVTAVHISIPVSDIHLAHKLGKDR 105 (259)
T ss_pred HcCCCEEEEecCCCCHHHHHHHHHHHhcCCCCEEEEeccCCHHHH-----HHHHhCCcCEEEEEEecCHHHHHHHhCCCH
Confidence 57777777777666654432110 112334443 245678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
++.++++.++++++++.|++|. |++++.++++++++.++++++.++|+++|+|+||+|.++|++++++++.+++
T Consensus 106 ~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~ 179 (259)
T cd07939 106 AWVLDQLRRLVGRAKDRGLFVS------VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRA 179 (259)
T ss_pred HHHHHHHHHHHHHHHHCCCeEE------EeeccCCCCCHHHHHHHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999886 5567888999999999999999999999999999999999999999999999
Q ss_pred hcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhC-CCCCCCChhhHHHH
Q psy12516 212 VIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM-GIETGADLTSLLRT 290 (327)
Q Consensus 212 ~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~-g~~~~~d~~~l~~~ 290 (327)
.+| ++|++|+|||+|||+||+++|+++|+++||+|++|||+ |+||++||+++.+|++. |+++++|+++|.++
T Consensus 180 ~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~------~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~ 252 (259)
T cd07939 180 ATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE------RAGNAALEEVVMALKHLYGRDTGIDTTRLPEL 252 (259)
T ss_pred hcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc------cccCcCHHHHHHHHHHhcCCCCCcCHHHHHHH
Confidence 998 79999999999999999999999999999999999999 99999999999999986 99999999999999
Q ss_pred HHHHHH
Q psy12516 291 GHYICG 296 (327)
Q Consensus 291 ~~~~~~ 296 (327)
++++++
T Consensus 253 ~~~~~~ 258 (259)
T cd07939 253 SQLVAR 258 (259)
T ss_pred HHHHHh
Confidence 999876
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=306.71 Aligned_cols=194 Identities=16% Similarity=0.101 Sum_probs=177.7
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC-------eEEEEEeeeccCCCCCCCChHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI-------RVRGYISCVVGCPYEGAVPPHNVTR 175 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi-------~v~~~l~~~~g~~~~~r~~~e~l~~ 175 (327)
.+..++.+.++++.+.|+.|.+.+++++++|.++++.+.+++|++.|. .|. |+.+|.+|++++++.+
T Consensus 118 ~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~------~~~EDasRad~dfL~~ 191 (333)
T PRK14847 118 ALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYE------YSPETFSLAELDFARE 191 (333)
T ss_pred HhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEE------EeeecCCCCCHHHHHH
Confidence 444556677999999999999999999999999999999999999965 444 6678899999999999
Q ss_pred HHHHHHHc-C-----cCEEEecCCCCccCHHHHHHHHHHHHHhcC---CCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 176 VATALYKM-G-----CYEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 176 ~~~~~~~~-g-----~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+++.+.+. | +++|+|+||+|.++|.+++++++.+++.++ +++|++|+|||+|||+||+++|+++||++||+
T Consensus 192 ~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~ 271 (333)
T PRK14847 192 VCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEG 271 (333)
T ss_pred HHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEe
Confidence 99987655 5 677999999999999999999999998875 68999999999999999999999999999999
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCCh---hhhh
Q psy12516 247 SIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNS---KVAK 308 (327)
Q Consensus 247 s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~---~~~~ 308 (327)
|++|+|| |+||++||+++.+|+..|+++++|++.|.++++++++.+++++|+ ++|-
T Consensus 272 tv~G~GE------RaGNa~lE~v~~~L~~~g~~~~id~~~l~~~~~~v~~~sg~~v~~~kPivg~ 330 (333)
T PRK14847 272 CLFGNGE------RTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLPIDVFHPYAWL 330 (333)
T ss_pred eCCcCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeecC
Confidence 9999999 999999999999999999999999999999999999999999985 5654
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-42 Score=331.01 Aligned_cols=250 Identities=23% Similarity=0.351 Sum_probs=229.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
+.|.|.||+ |.++|..++...+.+.+..+. +++|++..+.|| ...||++++.++|+||++.+.
T Consensus 3 ~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~G-------------Gatfd~~~rfl~Edpwerlr~ 69 (499)
T PRK12330 3 RKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWG-------------GATFDACIRFLNEDPWERLRT 69 (499)
T ss_pred CCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecC-------------CcchhhhhcccCCCHHHHHHH
Confidence 358899999 999999999999999888875 779999999986 467999999999999987753
Q ss_pred ---------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 ---------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 ---------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
| ...+++++..+.+++.++|+|.+++|+++|+ +++++..++.+++
T Consensus 70 lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lnd--------------v~nl~~ai~~vk~ 135 (499)
T PRK12330 70 FRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALND--------------PRNLEHAMKAVKK 135 (499)
T ss_pred HHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCCh--------------HHHHHHHHHHHHH
Confidence 1 1467888888889999999999999999999 7889999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-CCeEEEeecCCc
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTY 226 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~ 226 (327)
.|.++.++++++.+ | .++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++.+| +++|++|+|||+
T Consensus 136 ag~~~~~~i~yt~s-p---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~ 211 (499)
T PRK12330 136 VGKHAQGTICYTVS-P---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTT 211 (499)
T ss_pred hCCeEEEEEEEecC-C---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCC
Confidence 99999999988542 2 679999999999999999999999999999999999999999999996 799999999999
Q ss_pred CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 227 g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
|||+||+++|+++||++||+|++|||+ ++||+++|+++.+|+..|+++++|+++|.+++++++++..
T Consensus 212 GlA~An~laAieAGad~vDtai~Glg~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~ 278 (499)
T PRK12330 212 GVTLVSLMKAIEAGVDVVDTAISSMSL------GPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRP 278 (499)
T ss_pred CcHHHHHHHHHHcCCCEEEeecccccc------cccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999987643
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=301.61 Aligned_cols=181 Identities=29% Similarity=0.419 Sum_probs=171.3
Q ss_pred hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 104 ~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
+...+++.++++.++|+.|.+.++++++++.++.+.++++++++.|+++. |++|+.++++++++.++++++.++
T Consensus 82 ~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~~~~~~~~~ 155 (268)
T cd07940 82 LKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE------FSAEDATRTDLDFLIEVVEAAIEA 155 (268)
T ss_pred CCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EeeecCCCCCHHHHHHHHHHHHHc
Confidence 33345999999999999999999999999999999999999999999886 567888899999999999999999
Q ss_pred CcCEEEecCCCCccCHHHHHHHHHHHHHhcCC--CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCC
Q psy12516 184 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA--DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 261 (327)
Q Consensus 184 g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~--~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~ 261 (327)
|+++|+|+||+|.++|.+++++++.+++.+|+ ++|++|+|||+|||+||+++|+++|+++||+|++|||+ |+
T Consensus 156 G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~------~a 229 (268)
T cd07940 156 GATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE------RA 229 (268)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccc------cc
Confidence 99999999999999999999999999999986 89999999999999999999999999999999999999 99
Q ss_pred CCccHHHHHHHHHhCC----CCCCCChhhHHHHHHHHHH
Q psy12516 262 GNVATEDLVYMLEGMG----IETGADLTSLLRTGHYICG 296 (327)
Q Consensus 262 Gn~~~e~~~~~l~~~g----~~~~~d~~~l~~~~~~~~~ 296 (327)
||++||+++.+|+..| +++++|+++|.++++++++
T Consensus 230 GN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~~ 268 (268)
T cd07940 230 GNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVSR 268 (268)
T ss_pred ccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999876 9999999999999999863
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=325.12 Aligned_cols=249 Identities=22% Similarity=0.335 Sum_probs=229.3
Q ss_pred EEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc-
Q psy12516 14 EISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS- 88 (327)
Q Consensus 14 ~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~- 88 (327)
.|.|.||+ |.++++..|...+.+++..+. +++||+..+.|| ...||++++.+.|+||++.+.
T Consensus 12 ~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wG-------------GAtfd~~~rfl~edpwerlr~~ 78 (468)
T PRK12581 12 QVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWG-------------GATFDACIRFLNEDPWERLRTL 78 (468)
T ss_pred ceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecC-------------CcchhhhhcccCCCHHHHHHHH
Confidence 69999999 999999999999999998875 788999999996 468999999999999987753
Q ss_pred --------------C-C-----CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 89 --------------G-N-----VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 89 --------------g-n-----~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
| | ..+++++..+.+++.++|+|.++++++.++ +++++..++.+|+.
T Consensus 79 r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd--------------~~n~~~ai~~ak~~ 144 (468)
T PRK12581 79 KKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALND--------------PRNIQQALRAVKKT 144 (468)
T ss_pred HHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCC--------------HHHHHHHHHHHHHc
Confidence 2 1 357799999999999999999999999988 89999999999999
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ 228 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~ 228 (327)
|.++.+.+++.. +| .++.+++.++++++.++|+++|+|+||+|.++|.+++++++.+++ .++++|++|+|||.||
T Consensus 145 G~~~~~~i~yt~-sp---~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H~Hnt~Gl 219 (468)
T PRK12581 145 GKEAQLCIAYTT-SP---VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVHTHATSGI 219 (468)
T ss_pred CCEEEEEEEEEe-CC---cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEEeCCCCcc
Confidence 999999999865 33 579999999999999999999999999999999999999999997 4568999999999999
Q ss_pred HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCC
Q psy12516 229 ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKK 300 (327)
Q Consensus 229 a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~ 300 (327)
|+||+++|+++||++||+|++|+|+ ++||+++|+++.+|+..|+++++|+++|.+++++++++...
T Consensus 220 A~An~laAieAGad~vD~ai~g~g~------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~ 285 (468)
T PRK12581 220 SQMTYLAAVEAGADRIDTALSPFSE------GTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQK 285 (468)
T ss_pred HHHHHHHHHHcCCCEEEeeccccCC------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 89999999999999999999999999999999999887544
|
|
| >KOG2367|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-40 Score=304.90 Aligned_cols=206 Identities=21% Similarity=0.291 Sum_probs=195.0
Q ss_pred cchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC-eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE
Q psy12516 109 VKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI-RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE 187 (327)
Q Consensus 109 id~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi-~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~ 187 (327)
-.+++++.+.|+.|++++++++++|.++.+.+.++++++.|. .++ |++|+.+|++++++.++++.+.++|+.+
T Consensus 147 r~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ie------FSpEd~~rse~~fl~eI~~aV~Kag~~t 220 (560)
T KOG2367|consen 147 RPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIE------FSPEDFGRSELEFLLEILGAVIKAGVTT 220 (560)
T ss_pred cceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEE------ECccccccCcHHHHHHHHHHHHHhCCcc
Confidence 346888999999999999999999999999999999999994 454 8899999999999999999999999999
Q ss_pred EEecCCCCccCHHHHHHHHHHHHHhcCCC---eEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCc
Q psy12516 188 ISLGDTIGVGTPGTMRLMLEDVLTVIPAD---RLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNV 264 (327)
Q Consensus 188 i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~---~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~ 264 (327)
+.|+||+|+.+|.++++++..++.+.|+. -|+.|||||+|+|+||+..++.+|+++||+|++|+|| |+||+
T Consensus 221 vnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE~~i~GiGE------RtGn~ 294 (560)
T KOG2367|consen 221 VNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVEVTINGIGE------RTGNA 294 (560)
T ss_pred ccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEEEEeecccc------ccCCC
Confidence 99999999999999999999999988764 5999999999999999999999999999999999999 99999
Q ss_pred cHHHHHHHHHhCC---CCCCCChhhHHHHHHHHHHhcCCCCCh---hhhhccccccc-------ccCccCccCCC
Q psy12516 265 ATEDLVYMLEGMG---IETGADLTSLLRTGHYICGKLKKPSNS---KVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 265 ~~e~~~~~l~~~g---~~~~~d~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
||++|+++|.-.| +...+|+.++.++.+.++++.++++|| ++|.++|+|++ +|||.+|||.|
T Consensus 295 ~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~v~p~~pi~G~~~Fth~SGiHqdaIlk~r~tYeiLd 369 (560)
T KOG2367|consen 295 PLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGINVPPHKPIVGANAFTHESGIHQDAILKNRSTYEILD 369 (560)
T ss_pred CHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCCCCCCCccccceeEeecccccHHHHhcCCCCcccCC
Confidence 9999999999888 888999999999999999999999985 79999999997 99999999986
|
|
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=331.20 Aligned_cols=249 Identities=22% Similarity=0.303 Sum_probs=231.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
+.+.|.||+ |.+|.+.+|....++.+..|. ++.||+..+.||. ..||++++.++||||++.+.
T Consensus 2 ~~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gG-------------atfd~~~rfl~edpwerl~~ 68 (596)
T PRK14042 2 SKTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGG-------------ATFDACLRFLKEDPWSRLRQ 68 (596)
T ss_pred CceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCC-------------cccceeecccCCCHHHHHHH
Confidence 457899999 999999999999999999885 7899999999974 67999999999999988753
Q ss_pred ---------------C-C-----CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 ---------------G-N-----VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 ---------------g-n-----~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
| | ..+++++..+.+++.++|+|.+++|++.++ +++++..++.+++
T Consensus 69 ~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd--------------~~n~~~~i~~~k~ 134 (596)
T PRK14042 69 LRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALND--------------ARNLKVAIDAIKS 134 (596)
T ss_pred HHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcc--------------hHHHHHHHHHHHH
Confidence 1 1 458899999999999999999999999998 8999999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
.|.++.+.++++. +| .++++++.++++++.++|+++|+|+||+|+++|.+++++++.+|+.++ ++|++|+|||.|
T Consensus 135 ~G~~~~~~i~yt~-sp---~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~G 209 (596)
T PRK14042 135 HKKHAQGAICYTT-SP---VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTSG 209 (596)
T ss_pred cCCEEEEEEEecC-CC---CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCC
Confidence 9999999999864 34 689999999999999999999999999999999999999999999986 799999999999
Q ss_pred cHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
||+||+++|+++||++||+|+.|||+ ++||+++|+++.+|+..|+++++|+++|.+++++++++..
T Consensus 210 la~an~laAieaGad~iD~ai~glGg------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr~ 275 (596)
T PRK14042 210 LASICHYEAVLAGCNHIDTAISSFSG------GASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVRK 275 (596)
T ss_pred cHHHHHHHHHHhCCCEEEeccccccC------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 8999999999999999999999999999999999988743
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-41 Score=323.38 Aligned_cols=247 Identities=25% Similarity=0.341 Sum_probs=219.4
Q ss_pred EEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc--
Q psy12516 15 ISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS-- 88 (327)
Q Consensus 15 i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~-- 88 (327)
|.|.||+ |.|++..++...+..++..+. .++|++..+.|| ...||++++.++++||++.+.
T Consensus 3 V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~g-------------gatfd~~~~Fl~e~p~e~l~~l~ 69 (467)
T PRK14041 3 VMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWG-------------GATFDVCVRFLNENPWERLKEIR 69 (467)
T ss_pred eEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecC-------------CccchhhhcccCCCHHHHHHHHH
Confidence 7899999 999997666666666665553 667888888875 356888888899988854431
Q ss_pred -------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC
Q psy12516 89 -------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG 149 (327)
Q Consensus 89 -------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G 149 (327)
| ....++++..+.+.+.++|+|.++++.++|+ ++++.+.++++++.|
T Consensus 70 ~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G 135 (467)
T PRK14041 70 KRLKNTKIQMLLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALND--------------IRNLEKSIEVAKKHG 135 (467)
T ss_pred HhCCCCEEEEEeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCH--------------HHHHHHHHHHHHHCC
Confidence 1 1367889988888999999999999999998 677889999999999
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA 229 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a 229 (327)
.++.++++++++ | +++++++.++++++.++|+++|+|+||+|+++|.+++++++.+|+.++ ++|++|+|||+|||
T Consensus 136 ~~v~~~i~~t~~-p---~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA 210 (467)
T PRK14041 136 AHVQGAISYTVS-P---VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLA 210 (467)
T ss_pred CEEEEEEEeccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcH
Confidence 999999998774 3 689999999999999999999999999999999999999999999997 79999999999999
Q ss_pred HHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 230 LANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 230 ~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
+||+++|+++||++||+|++|+|+ ++||+++|+++.+|+..|+++++|+++|.+++++++++..
T Consensus 211 ~AN~laAieaGad~vD~sv~~~g~------gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr~ 274 (467)
T PRK14041 211 SLAYLAAVEAGADMFDTAISPFSM------GTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVRE 274 (467)
T ss_pred HHHHHHHHHhCCCEEEeeccccCC------CCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999988743
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=320.64 Aligned_cols=247 Identities=24% Similarity=0.363 Sum_probs=216.9
Q ss_pred EEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc-
Q psy12516 14 EISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS- 88 (327)
Q Consensus 14 ~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~- 88 (327)
.|.|.||+ |.|+|+.++...+...+..+. .++|++..+.+| ...||++++.++++||++.+.
T Consensus 3 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~g-------------gatf~~~~~f~~e~p~e~l~~l 69 (448)
T PRK12331 3 KIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWG-------------GATFDACLRFLNEDPWERLRKI 69 (448)
T ss_pred ccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecC-------------CccchhhhccCCCCHHHHHHHH
Confidence 58899999 999997766667766666553 667888888875 366888888999999865532
Q ss_pred ----C----------------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 89 ----G----------------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 89 ----g----------------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
- ...+++++....+++.++|+|.++++.+.|+ ++++.+.++++++.
T Consensus 70 ~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd--------------~~n~~~~v~~ak~~ 135 (448)
T PRK12331 70 RKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALND--------------VRNLETAVKATKKA 135 (448)
T ss_pred HHhCCCCEEEEEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCc--------------HHHHHHHHHHHHHc
Confidence 0 1346677777778889999999999999999 45677789999999
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ 228 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~ 228 (327)
|++++++++++++ .+++++++.++++++.++|+|+|+|+||+|+++|.+++++++.+|+.++ ++|++|+|||+||
T Consensus 136 G~~v~~~i~~t~~----p~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~Gl 210 (448)
T PRK12331 136 GGHAQVAISYTTS----PVHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGI 210 (448)
T ss_pred CCeEEEEEEeecC----CCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCc
Confidence 9999998888763 3699999999999999999999999999999999999999999999987 7999999999999
Q ss_pred HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhc
Q psy12516 229 ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKL 298 (327)
Q Consensus 229 a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~ 298 (327)
|+||+++|+++||++||+|++|+|+ ++||+++|+++.+|+..|+++++|+++|.+++++++++.
T Consensus 211 A~AN~laAieaGad~vD~sv~glg~------gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r 274 (448)
T PRK12331 211 AEMTYLKAIEAGADIIDTAISPFAG------GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIR 274 (448)
T ss_pred HHHHHHHHHHcCCCEEEeeccccCC------CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999 899999999999999999999999999999999997763
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=303.39 Aligned_cols=182 Identities=25% Similarity=0.379 Sum_probs=167.4
Q ss_pred HHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHH
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHN 172 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~ 172 (327)
+.++.....++..++|++.++++.+.|+ ++++.+.++++|+.|+++..++++++ .+++++++
T Consensus 89 p~~~~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~----~~~~~~~~ 150 (275)
T cd07937 89 PDDVVELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG----SPVHTLEY 150 (275)
T ss_pred CcHHHHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC----CCCCCHHH
Confidence 3344444556778899999999999988 78899999999999999988777643 46899999
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
+.++++++.++|+++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++|+++||+|++|||
T Consensus 151 ~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG 229 (275)
T cd07937 151 YVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLS 229 (275)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEeccccc
Confidence 999999999999999999999999999999999999999998 7999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 253 GCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 253 ~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
| |+||++||+++.+|+..|+++++|+++|.+++++++++..
T Consensus 230 ~------~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~~ 270 (275)
T cd07937 230 G------GTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVRK 270 (275)
T ss_pred C------CcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9 9999999999999999999999999999999999998753
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=295.03 Aligned_cols=189 Identities=21% Similarity=0.305 Sum_probs=174.4
Q ss_pred CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC
Q psy12516 90 NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 90 n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
+...+++- .+.++|++.++++.++|+.|++.+++++++|.++.+.++++++++.|++|.++++++| |++
T Consensus 71 r~~~~di~-----~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~------r~~ 139 (262)
T cd07948 71 RCHMDDAR-----IAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF------RSD 139 (262)
T ss_pred cCCHHHHH-----HHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC------CCC
Confidence 34455543 4567899999999999999999999999999999999999999999999998887765 577
Q ss_pred hHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 170 PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
++++.++++++.++|+++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||+|||+||+++|+++|+++||+|++
T Consensus 140 ~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~ 218 (262)
T cd07948 140 LVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVL 218 (262)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence 899999999999999999999999999999999999999999988 7999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCccHHHHHHHHHhC---CCCCCCChhhHHHHHHHHHH
Q psy12516 250 GLGGCPYARGASGNVATEDLVYMLEGM---GIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 250 G~G~~p~~~g~~Gn~~~e~~~~~l~~~---g~~~~~d~~~l~~~~~~~~~ 296 (327)
|||| |+||+++|+++.+|+.. ++++++|+++|.++++++++
T Consensus 219 GlGe------raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~~ 262 (262)
T cd07948 219 GIGE------RNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVAD 262 (262)
T ss_pred cccc------ccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHhC
Confidence 9999 99999999999999753 67789999999999999864
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=328.64 Aligned_cols=248 Identities=24% Similarity=0.374 Sum_probs=225.0
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
+.|.|.||+ |.|+|+.++...+.+.+..+. +++|++..+.|| ...||+++..++++||++.+.
T Consensus 3 k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~G-------------Gatf~~~~~~~~e~p~e~lr~ 69 (593)
T PRK14040 3 KPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWG-------------GATFDACIRFLGEDPWERLRE 69 (593)
T ss_pred CccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecC-------------CcchhhhccccCCCHHHHHHH
Confidence 358999999 999999988888888888775 778999999986 367999999999999976642
Q ss_pred ---------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 ---------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 ---------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
| ..++++++..+.+.+.++|+|.+++|++.++ ++++...++++|+
T Consensus 70 l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd--------------~~~~~~ai~~ak~ 135 (593)
T PRK14040 70 LKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMND--------------PRNLETALKAVRK 135 (593)
T ss_pred HHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCc--------------HHHHHHHHHHHHH
Confidence 1 1346788888888999999999999999998 6789999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
.|.++.+++++.+. | .++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++.+. ++|++|+|||.|
T Consensus 136 ~G~~~~~~i~yt~~-p---~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~G 210 (593)
T PRK14040 136 VGAHAQGTLSYTTS-P---VHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTG 210 (593)
T ss_pred cCCeEEEEEEEeeC-C---ccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCc
Confidence 99999998887542 3 578999999999999999999999999999999999999999999984 799999999999
Q ss_pred cHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhc
Q psy12516 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKL 298 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~ 298 (327)
||+||+++|+++||++||+|++|||+ |+||+++|+++.+|+..|+++++|++.|.+++++++++.
T Consensus 211 lA~An~laAieAGa~~vD~ai~glG~------~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~ 275 (593)
T PRK14040 211 LSTATLLKAIEAGIDGVDTAISSMSM------TYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVR 275 (593)
T ss_pred hHHHHHHHHHHcCCCEEEeccccccc------cccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999 999999999999999999999999999999999999874
|
|
| >KOG2368|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=276.18 Aligned_cols=212 Identities=64% Similarity=1.119 Sum_probs=204.6
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++.+|...+.+|.+.|+.|+..|+|++.+|.+.+++++.+.|+++++.|++|+++..||||++...|+.+.++.+.+.+
T Consensus 101 ~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPyeG~v~P~kVa~V~k~ly~ 180 (316)
T KOG2368|consen 101 AAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYEGAVQPSKVAEVVKKLYE 180 (316)
T ss_pred HHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCccCCcCHHHHHHHHHHHHh
Confidence 46778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+..|.|.||.|..||..+.+++..+.+..|.-.+.+||||+||.|+||.|.+++.|++.+|.|+.|+|+||+|-|.+|
T Consensus 181 mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvDSsvaGLGGCPYAkGAsG 260 (316)
T KOG2368|consen 181 MGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVDSSVAGLGGCPYAKGASG 260 (316)
T ss_pred CCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehhhhccccCCCCccccCCC
Confidence 99999999999999999999999999999998778999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCChhhhhcccccc
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKALPVKE 314 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (327)
|+.+|+++.+|+.+|++|++|+++|.++++++.+.+|++-.+.+++.-++-.
T Consensus 261 N~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~algr~~~Skva~A~~~~~ 312 (316)
T KOG2368|consen 261 NLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALGRTTWSKVAQAMMAKK 312 (316)
T ss_pred CchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhCCCchhHHHHHHhhhh
Confidence 9999999999999999999999999999999999999999998888766543
|
|
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=288.78 Aligned_cols=181 Identities=15% Similarity=0.136 Sum_probs=164.5
Q ss_pred chhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE-EEEEeeeccCCCCCCCChHHHHHHHHHHHHc---Cc
Q psy12516 110 KEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV-RGYISCVVGCPYEGAVPPHNVTRVATALYKM---GC 185 (327)
Q Consensus 110 d~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v-~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~---g~ 185 (327)
+.++++.+.|+.|.+.+++++++|+++.+.++++++++.|++. ...+...|+.+|.+|.+++++.++++.+.++ |+
T Consensus 94 ~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~ 173 (284)
T cd07942 94 AIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTP 173 (284)
T ss_pred CEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCC
Confidence 3688999999999999999999999999999999999999751 1113334667778899999999999999887 54
Q ss_pred ---CEEEecCCCCccCHHHHHHHHHHHHHhcC---CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 186 ---YEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 186 ---~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
++|+|+||+|.++|.++++++..+++.+| +++|++|+|||+|||+||+++|+++|+++||+|++|+|+
T Consensus 174 ~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id~~~~g~Ge------ 247 (284)
T cd07942 174 ENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVEGTLFGNGE------ 247 (284)
T ss_pred CcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEEeeCccCCc------
Confidence 49999999999999999999999999886 456999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy12516 260 ASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~ 296 (327)
|+||++||+++.+|+.+|+++++|+++|.++++++++
T Consensus 248 RaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~ 284 (284)
T cd07942 248 RTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE 284 (284)
T ss_pred cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999863
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=287.28 Aligned_cols=185 Identities=22% Similarity=0.310 Sum_probs=171.8
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.++++++++.++++.+.++++|+.|++|.++.+. | .+.++++++++.++++++.+
T Consensus 86 ~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~-~--~d~~~~~~~~~~~~~~~~~~ 162 (273)
T cd07941 86 ALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEH-F--FDGYKANPEYALATLKAAAE 162 (273)
T ss_pred HHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEe-c--cccCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999876443 2 23458999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 163 ~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGe------raG 236 (273)
T cd07941 163 AGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGE------RCG 236 (273)
T ss_pred CCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccccc------ccc
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHH-hCCCC--CCCChhhHHHHHHHHHH
Q psy12516 263 NVATEDLVYMLE-GMGIE--TGADLTSLLRTGHYICG 296 (327)
Q Consensus 263 n~~~e~~~~~l~-~~g~~--~~~d~~~l~~~~~~~~~ 296 (327)
|+++|+++.+|+ ++|++ +++|+++|.++++++++
T Consensus 237 n~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~ 273 (273)
T cd07941 237 NANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE 273 (273)
T ss_pred cccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence 999999999998 57776 47999999999999863
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-38 Score=286.57 Aligned_cols=182 Identities=25% Similarity=0.389 Sum_probs=165.6
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCh-----HHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPP-----HNVTRVA 177 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~-----e~l~~~~ 177 (327)
.++++|++.+.++.++|+.|++.|+|++++|+++++.+++++|++.|+++.+++.. .+|.++ +++.+++
T Consensus 82 ~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed------~~r~d~~~~v~~~~~~~~ 155 (279)
T cd07947 82 LVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLED------ITRADIYGFVLPFVNKLM 155 (279)
T ss_pred HHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEc------ccCCCcccchHHHHHHHH
Confidence 34577999999999999999999999999999999999999999999999877644 445555 3777777
Q ss_pred HHHHHcCcC-EEEecCCCCccCH-------HHHHHHHHHHHHh--cCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 178 TALYKMGCY-EISLGDTIGVGTP-------GTMRLMLEDVLTV--IPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 178 ~~~~~~g~~-~i~l~Dt~G~~~P-------~~~~~~~~~~~~~--~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
+.+.++|++ +|+|+||+|.++| .+++++++.+++. +|+++|++|+|||+|||+||+++|+++|+++||+|
T Consensus 156 ~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~vd~s 235 (279)
T cd07947 156 KLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCT 235 (279)
T ss_pred HHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCCCEEEEe
Confidence 777779999 8999999999988 6899999999988 56678999999999999999999999999999999
Q ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHH
Q psy12516 248 IAGLGGCPYARGASGNVATEDLVYMLEGM-GIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~-g~~~~~d~~~l~~~~~~~~~ 296 (327)
++|||+ |+||++||+++.+|+.+ |+++++|+++|.++++++++
T Consensus 236 v~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~~~~~~ 279 (279)
T cd07947 236 LLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIAEYFEK 279 (279)
T ss_pred cccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence 999999 99999999999999987 99999999999999999763
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=321.52 Aligned_cols=264 Identities=24% Similarity=0.352 Sum_probs=231.9
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
+.|.|.||+ |.|+++.++...+.+.+..+. .++|++..+.|| ...+|++++.++++||++.+.
T Consensus 2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~g-------------gatfd~~~rfl~edp~e~l~~ 68 (592)
T PRK09282 2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWG-------------GATFDVCIRYLNEDPWERLRK 68 (592)
T ss_pred CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecC-------------CccchhhcccCCccHHHHHHH
Confidence 458899999 999998766666766666653 667888888875 467999999999999976643
Q ss_pred ---------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 ---------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 ---------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
| ..++++++..+.+++.++|+|.+++++++|+ ++++.+.++++++
T Consensus 69 l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~ 134 (592)
T PRK09282 69 LKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALND--------------VRNMEVAIKAAKK 134 (592)
T ss_pred HHHhCCCCEEEEEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecCh--------------HHHHHHHHHHHHH
Confidence 1 1346778888888899999999999999999 6788999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
.|.++.++++++++ | +++++++.++++++.++|+++|+||||+|.++|.+++++++.+++.++ ++|++|+|||.|
T Consensus 135 ~G~~v~~~i~~t~~-p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~G 209 (592)
T PRK09282 135 AGAHVQGTISYTTS-P---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSG 209 (592)
T ss_pred cCCEEEEEEEeccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCC
Confidence 99999999988763 4 589999999999999999999999999999999999999999999987 799999999999
Q ss_pred cHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCC--CCh-
Q psy12516 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKP--SNS- 304 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~--~~~- 304 (327)
||+||+++|+++||++||+|++|+|+ |+||+++|+++.+|+..|+++++|+++|.+++++++++...- ++|
T Consensus 210 la~An~laAv~aGad~vD~ai~g~g~------~agn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~~ 283 (592)
T PRK09282 210 LAPMTYLKAVEAGVDIIDTAISPLAF------GTSQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFESE 283 (592)
T ss_pred cHHHHHHHHHHhCCCEEEeeccccCC------CcCCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999999999 999999999999999999999999999999999999986543 322
Q ss_pred --hhhhcccccc
Q psy12516 305 --KVAKALPVKE 314 (327)
Q Consensus 305 --~~~~~~~~~~ 314 (327)
....+++.|+
T Consensus 284 ~~~~~~~v~~~~ 295 (592)
T PRK09282 284 FTIVDTRVLIHQ 295 (592)
T ss_pred cccCCccEEEEc
Confidence 4667888888
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=295.34 Aligned_cols=248 Identities=27% Similarity=0.400 Sum_probs=229.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
..|.+.||+ |++|...+|.+++++...... +++|||.-+.||. ..||++++.|+|+||+|+|.
T Consensus 4 k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGG-------------ATFDaciRfLnEDPWeRLr~ 70 (472)
T COG5016 4 KKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGG-------------ATFDACIRFLNEDPWERLRE 70 (472)
T ss_pred ceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCC-------------ccHHHHHHHhcCCHHHHHHH
Confidence 468899998 999999999999999988754 8999999999974 79999999999999998863
Q ss_pred -----CC----------------CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH
Q psy12516 89 -----GN----------------VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT 147 (327)
Q Consensus 89 -----gn----------------~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~ 147 (327)
.| ...+|++..+.++++++|+|.+|+|++.+| +++++..++.+++
T Consensus 71 lk~~~~nT~LQMLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND--------------~RNl~~ai~a~kk 136 (472)
T COG5016 71 LKKAVPNTKLQMLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALND--------------VRNLKTAIKAAKK 136 (472)
T ss_pred HHHhCCCcHHHHHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccc--------------hhHHHHHHHHHHh
Confidence 22 467889999999999999999999999999 8899999999999
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
.|.|+.+.+++.. +| .++.+++.++++++.++|+|.|+|+|++|+++|...+++|+.+|+.++ ++|.+|+|.+.|
T Consensus 137 ~G~h~q~~i~YT~-sP---vHt~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG 211 (472)
T COG5016 137 HGAHVQGTISYTT-SP---VHTLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSG 211 (472)
T ss_pred cCceeEEEEEecc-CC---cccHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecccccc
Confidence 9999999999965 44 489999999999999999999999999999999999999999999999 799999999999
Q ss_pred cHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhc
Q psy12516 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKL 298 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~ 298 (327)
||.++.+.|+++|+|.||+++..+.+ +++++++|.++.+|+..++++++|++.+.++++++.++.
T Consensus 212 ~a~m~ylkAvEAGvD~iDTAisp~S~------gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vr 276 (472)
T COG5016 212 MAEMTYLKAVEAGVDGIDTAISPLSG------GTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVR 276 (472)
T ss_pred hHHHHHHHHHHhCcchhhhhhccccC------CCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHH
Confidence 99999999999999999999995555 599999999999999999999999999999999998753
|
|
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=319.07 Aligned_cols=245 Identities=24% Similarity=0.372 Sum_probs=215.0
Q ss_pred ecCCc---cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc----
Q psy12516 17 LGDTI---GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS---- 88 (327)
Q Consensus 17 ~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~---- 88 (327)
|.||+ |.|+++..+...+...+..+. .++|++..+.|| ...||++++.++++||++.+.
T Consensus 1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~G-------------Gatfd~~~~f~~e~~~e~l~~l~~~ 67 (582)
T TIGR01108 1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWG-------------GATFDACIRFLNEDPWERLRELKKA 67 (582)
T ss_pred CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecC-------------CcccccccccCCCCHHHHHHHHHHh
Confidence 46777 999987666666666665543 567888888775 367888899999999865532
Q ss_pred -----------C-C-----CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe
Q psy12516 89 -----------G-N-----VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 89 -----------g-n-----~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
| | ..+++++..+.+.+.++|+|.++++.++|+ .+++...++++++.|++
T Consensus 68 ~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd--------------~~n~~~~i~~ak~~G~~ 133 (582)
T TIGR01108 68 LPNTPLQMLLRGQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALND--------------PRNLQAAIQAAKKHGAH 133 (582)
T ss_pred CCCCEEEEEEccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCc--------------HHHHHHHHHHHHHcCCE
Confidence 1 1 356778887788899999999999999998 56788899999999999
Q ss_pred EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHH
Q psy12516 152 VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALA 231 (327)
Q Consensus 152 v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~a 231 (327)
+.+++++++ +| +++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++.++ ++|++|+|||.|||+|
T Consensus 134 v~~~i~~t~-~p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~A 208 (582)
T TIGR01108 134 AQGTISYTT-SP---VHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEM 208 (582)
T ss_pred EEEEEEecc-CC---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHH
Confidence 999998866 55 489999999999999999999999999999999999999999999998 7999999999999999
Q ss_pred HHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 232 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 232 n~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
|+++|+++||++||+|++|||+ |+||++||+++.+|+..|+++++|+++|.+++++++++..
T Consensus 209 n~laAveaGa~~vd~ai~GlG~------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~ 270 (582)
T TIGR01108 209 ALLKAIEAGADGIDTAISSMSG------GTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRK 270 (582)
T ss_pred HHHHHHHhCCCEEEeccccccc------cccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999 9999999999999999999999999999999999988644
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=282.69 Aligned_cols=184 Identities=41% Similarity=0.652 Sum_probs=174.2
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
...++|++.++++.+.|+.|.+.+++++.++.++.+.+.++++++.|+++.++++.++.| .++++++.++++.+.+
T Consensus 82 ~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----~~~~~~l~~~~~~~~~ 157 (265)
T cd03174 82 RALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLEVAKALEE 157 (265)
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC----CCCHHHHHHHHHHHHH
Confidence 446778999999999999999999999999999999999999999999999988876533 3899999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|++.|+++||+|.++|+++.++++.+++.++++++++|+|||+|||+||+++|+++||++||+|++|||+ |+|
T Consensus 158 ~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~------~~G 231 (265)
T cd03174 158 AGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGE------RAG 231 (265)
T ss_pred cCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccc------ccc
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~ 296 (327)
|+++|+++.+|+..|+++++|++.|.++++++++
T Consensus 232 n~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~~ 265 (265)
T cd03174 232 NAATEDLVAALEGLGIDTGIDLEKLLEISRYVEE 265 (265)
T ss_pred CccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999999999998863
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=279.75 Aligned_cols=163 Identities=34% Similarity=0.542 Sum_probs=149.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
...++|++.++++.+.|+.|.+.+++++.++.++++.++++++|+.|+++. |++++.++++++++.++++++.+
T Consensus 75 ~~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~------~~~~~~~~~~~~~~~~~~~~~~~ 148 (237)
T PF00682_consen 75 AAKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA------FGCEDASRTDPEELLELAEALAE 148 (237)
T ss_dssp HHHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE------EEETTTGGSSHHHHHHHHHHHHH
T ss_pred hhHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE------eCccccccccHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999995 55667789999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|+.|||+ |+|
T Consensus 149 ~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~------~~G 222 (237)
T PF00682_consen 149 AGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGE------RAG 222 (237)
T ss_dssp HT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS------TTS
T ss_pred cCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCC------CCC
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHhCC
Q psy12516 263 NVATEDLVYMLEGMG 277 (327)
Q Consensus 263 n~~~e~~~~~l~~~g 277 (327)
|++||+++.+|+.+|
T Consensus 223 n~~le~lv~~L~~~g 237 (237)
T PF00682_consen 223 NAPLEELVAALERMG 237 (237)
T ss_dssp B-BHHHHHHHHHHT-
T ss_pred CccHHHHHHHHhhcC
Confidence 999999999999875
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=288.02 Aligned_cols=216 Identities=24% Similarity=0.404 Sum_probs=179.2
Q ss_pred HHHH-HcCCcEEEeccc-CCCCCCCCCCccCCCcHHHHHHHhh---------------------hhhcccCcchhhhhhh
Q psy12516 61 LTAM-EFGISVFDSSIA-GLGGCPYARGASGNVATEDLVYMLE---------------------GKSMQCGVKEIAVFAS 117 (327)
Q Consensus 61 ~~a~-~aG~~~id~~~~-glg~~p~~~~~~gn~~~e~v~~~l~---------------------~~~~~~Gid~i~l~~~ 117 (327)
..++ ++|++.||++++ |+|+..|..+.....+.|.+-.... +.+.++|++.++++..
T Consensus 30 a~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~ 109 (333)
T TIGR03217 30 AAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATH 109 (333)
T ss_pred HHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccCHHHHHHHHHCCCCEEEEEec
Confidence 3344 688999998875 7777666655544444444322211 1234456666666655
Q ss_pred hhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc
Q psy12516 118 ASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG 197 (327)
Q Consensus 118 ~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~ 197 (327)
.++ .+...+.++++|+.|+++.++++++ ++++++++.++++.+.++|+++|+|+||+|.+
T Consensus 110 ~~e--------------~d~~~~~i~~ak~~G~~v~~~l~~s------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~ 169 (333)
T TIGR03217 110 CTE--------------ADVSEQHIGMARELGMDTVGFLMMS------HMTPPEKLAEQAKLMESYGADCVYIVDSAGAM 169 (333)
T ss_pred cch--------------HHHHHHHHHHHHHcCCeEEEEEEcc------cCCCHHHHHHHHHHHHhcCCCEEEEccCCCCC
Confidence 444 4568899999999999999988874 37899999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhC
Q psy12516 198 TPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM 276 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~ 276 (327)
+|.++.++++.+++.++ +++|++|+|||+|||+||+++|+++|+++||+|+.|||+ ++||+|||+++.+|+++
T Consensus 170 ~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~------~aGN~~~E~lv~~l~~~ 243 (333)
T TIGR03217 170 LPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGA------GAGNAPLEVFVAVLDRL 243 (333)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccc------cccCccHHHHHHHHHhc
Confidence 99999999999999985 689999999999999999999999999999999999999 99999999999999999
Q ss_pred CCCCCCChhhHHHHHHHH-HHhcCCCC
Q psy12516 277 GIETGADLTSLLRTGHYI-CGKLKKPS 302 (327)
Q Consensus 277 g~~~~~d~~~l~~~~~~~-~~~~~~~~ 302 (327)
|+++++|+++|.++++.+ ..+..+++
T Consensus 244 g~~tgidl~~l~~~a~~~v~p~~~~~~ 270 (333)
T TIGR03217 244 GWNTGCDLFKLMDAAEDIVRPLMDRPV 270 (333)
T ss_pred CCCCCcCHHHHHHHHHHHHHhhccCCC
Confidence 999999999999999866 55565654
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=286.10 Aligned_cols=210 Identities=26% Similarity=0.439 Sum_probs=173.5
Q ss_pred HcCCcEEEeccc-CCCCCCCCCCccCCCcHHHHHHHhh----------------------hhhcccCcchhhhhhhhhHH
Q psy12516 65 EFGISVFDSSIA-GLGGCPYARGASGNVATEDLVYMLE----------------------GKSMQCGVKEIAVFASASEM 121 (327)
Q Consensus 65 ~aG~~~id~~~~-glg~~p~~~~~~gn~~~e~v~~~l~----------------------~~~~~~Gid~i~l~~~~sd~ 121 (327)
++|++.||++++ |+|+..|..+.....+.| .+..+. +.+.++|++.++++...++
T Consensus 36 ~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e-~i~~~~~~~~~~~~~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e- 113 (337)
T PRK08195 36 AAGVPVIEVTHGDGLGGSSFNYGFGAHTDEE-YIEAAAEVVKQAKIAALLLPGIGTVDDLKMAYDAGVRVVRVATHCTE- 113 (337)
T ss_pred HcCCCEEEeecCCCCCCccccCCCCCCCHHH-HHHHHHHhCCCCEEEEEeccCcccHHHHHHHHHcCCCEEEEEEecch-
Confidence 678889998865 677655554433333322 222221 1223445666665554444
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHH
Q psy12516 122 FSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGT 201 (327)
Q Consensus 122 ~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~ 201 (327)
.+.+.+.++++|+.|+++.++++++ ++++++++.++++.+.++|+++|+|+||+|.++|++
T Consensus 114 -------------~~~~~~~i~~ak~~G~~v~~~l~~a------~~~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~ 174 (337)
T PRK08195 114 -------------ADVSEQHIGLARELGMDTVGFLMMS------HMAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPED 174 (337)
T ss_pred -------------HHHHHHHHHHHHHCCCeEEEEEEec------cCCCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHH
Confidence 4568899999999999999988874 478999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhc-CCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 202 MRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 202 ~~~~~~~~~~~~-~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
++++++.+++.+ |+++|++|+|||+|||+||+++|+++|+++||+|+.|||+ ++||++||+++.+|+++|+++
T Consensus 175 v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~------~aGN~~tE~lv~~L~~~g~~t 248 (337)
T PRK08195 175 VRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGA------GAGNTPLEVLVAVLDRMGWET 248 (337)
T ss_pred HHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcc------cccCccHHHHHHHHHhcCCCC
Confidence 999999999999 6799999999999999999999999999999999999999 999999999999999999999
Q ss_pred CCChhhHHHHHHHHHHh-cCCC
Q psy12516 281 GADLTSLLRTGHYICGK-LKKP 301 (327)
Q Consensus 281 ~~d~~~l~~~~~~~~~~-~~~~ 301 (327)
++|+++|.++++++..- ...+
T Consensus 249 gidl~~l~~~a~~~~~p~~~~~ 270 (337)
T PRK08195 249 GVDLYKLMDAAEDLVRPLMDRP 270 (337)
T ss_pred CcCHHHHHHHHHHHHhhhccCC
Confidence 99999999999987553 4344
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=275.47 Aligned_cols=168 Identities=28% Similarity=0.417 Sum_probs=156.8
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+ .+.++++++++|+.|+++.++++.+ ++++++++.++++++.+
T Consensus 93 ~a~~~g~~~iri~~~~s~--------------~~~~~~~i~~ak~~G~~v~~~~~~~------~~~~~~~~~~~~~~~~~ 152 (263)
T cd07943 93 MAADLGVDVVRVATHCTE--------------ADVSEQHIGAARKLGMDVVGFLMMS------HMASPEELAEQAKLMES 152 (263)
T ss_pred HHHHcCCCEEEEEechhh--------------HHHHHHHHHHHHHCCCeEEEEEEec------cCCCHHHHHHHHHHHHH
Confidence 445789999999988887 4567889999999999999888764 47899999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.++.++|++|+|||+|||+||+++|+++|+++||+|++|||| |+|
T Consensus 153 ~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~------~aG 226 (263)
T cd07943 153 YGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGA------GAG 226 (263)
T ss_pred cCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccC------CcC
Confidence 99999999999999999999999999999998669999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHH
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICG 296 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~ 296 (327)
|++||+++.+|+..|+++++|+++|.++++++.+
T Consensus 227 N~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~ 260 (263)
T cd07943 227 NTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR 260 (263)
T ss_pred CccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999865
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-38 Score=330.46 Aligned_cols=253 Identities=21% Similarity=0.287 Sum_probs=231.3
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-Ce--eEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCC
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DR--LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~--~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~ 86 (327)
+.|.|.||+ |+||.+.+|.+..++++..|. .+ .+|+.-+.||. ..||++++.|+||||+|+
T Consensus 529 ~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wgg-------------Atfd~~~rfl~EdPwerl 595 (1143)
T TIGR01235 529 KRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGG-------------ATFDVAMRFLHEDPWERL 595 (1143)
T ss_pred CCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCC-------------ccHHHHHHHhcCCHHHHH
Confidence 469999999 999999999999999999885 44 69999999974 679999999999999887
Q ss_pred cc---------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy12516 87 AS---------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA 145 (327)
Q Consensus 87 ~~---------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a 145 (327)
+. | ..++++++..+.+++.++|+|.+++|+++++ +++++..++.+
T Consensus 596 ~~~r~~~pn~~~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~--------------~~n~~~~~~~~ 661 (1143)
T TIGR01235 596 EDLRKGVPNILFQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNW--------------VENMRVGMDAV 661 (1143)
T ss_pred HHHHHhCCCCceeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcC--------------HHHHHHHHHHH
Confidence 53 1 2578999999999999999999999999999 89999999999
Q ss_pred HHcCCeEEEEEeeecc--CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 146 LTNGIRVRGYISCVVG--CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g--~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
++.|.+++++++++-. .|....++.+++.++++++.++|+++|+|+||+|+++|.+++++++.+|+.+ +++|++|+|
T Consensus 662 ~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~H 740 (1143)
T TIGR01235 662 AEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFHTH 740 (1143)
T ss_pred HHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 9999999999998521 1222257899999999999999999999999999999999999999999998 579999999
Q ss_pred CCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 224 n~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
||.|+|+||+++|+++||++||+|++|||+ .++++++|+++.+|+..|+++++|+++|.+++++++++..
T Consensus 741 dt~Gla~an~laA~eaGad~vD~ai~gl~G------~ts~p~~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~ 810 (1143)
T TIGR01235 741 DTSGIAVASMLAAVEAGVDVVDVAVDSMSG------LTSQPSLGAIVAALEGSERDPGLNVAWIRELSAYWEAVRN 810 (1143)
T ss_pred CCCCcHHHHHHHHHHhCCCEEEecchhhcC------CCCCHhHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999 8899999999999999999999999999999999998644
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-36 Score=272.25 Aligned_cols=167 Identities=20% Similarity=0.273 Sum_probs=151.6
Q ss_pred cccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 105 ~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
.++|++.++++.+.++ ++++.++++++|+.|++|.+++++++ +++++++.++++++.++|
T Consensus 92 ~~~gv~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~~~~a~------~~~~~~~~~~~~~~~~~g 151 (266)
T cd07944 92 SGSVVDMIRVAFHKHE--------------FDEALPLIKAIKEKGYEVFFNLMAIS------GYSDEELLELLELVNEIK 151 (266)
T ss_pred hcCCcCEEEEeccccc--------------HHHHHHHHHHHHHCCCeEEEEEEeec------CCCHHHHHHHHHHHHhCC
Confidence 4456666666554443 88999999999999999998888754 589999999999999999
Q ss_pred cCEEEecCCCCccCHHHHHHHHHHHHHhcCC-CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCC
Q psy12516 185 CYEISLGDTIGVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGN 263 (327)
Q Consensus 185 ~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~-~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn 263 (327)
+++|+|+||+|.++|++++++++.+++.++. ++|++|+|||+|||+||+++|+++|+++||+|++|||| |+||
T Consensus 152 ~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~------~aGN 225 (266)
T cd07944 152 PDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGR------GAGN 225 (266)
T ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCC------CcCc
Confidence 9999999999999999999999999999874 89999999999999999999999999999999999999 9999
Q ss_pred ccHHHHHHHHHhCCCCCCCChhhHHHHH-HHHHHhc
Q psy12516 264 VATEDLVYMLEGMGIETGADLTSLLRTG-HYICGKL 298 (327)
Q Consensus 264 ~~~e~~~~~l~~~g~~~~~d~~~l~~~~-~~~~~~~ 298 (327)
++||+++.+|+.. +++++|+++|.+++ ++++++.
T Consensus 226 ~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~~ 260 (266)
T cd07944 226 LPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPLK 260 (266)
T ss_pred HHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999988 78999999999999 7887764
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-37 Score=326.74 Aligned_cols=268 Identities=21% Similarity=0.280 Sum_probs=232.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCC-Cee--EEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCC
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPA-DRL--AVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~-~~~--~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~ 86 (327)
+.|.|.||+ |.|+|+.++.....+.+..+. .++ |++..+.||. ..||+++..+++|||++.
T Consensus 531 ~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~gg-------------atfd~~~r~l~e~p~erl 597 (1146)
T PRK12999 531 KRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGG-------------ATFDVAYRFLKEDPWERL 597 (1146)
T ss_pred CCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCC-------------cchhhhccccCCCHHHHH
Confidence 469999999 999999998888888888775 678 9999999963 568999999999999776
Q ss_pred cc---------------------CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy12516 87 AS---------------------GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA 145 (327)
Q Consensus 87 ~~---------------------gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a 145 (327)
+. .+.++++++..+-+.+.++|+|.+++|++.++ +++++..++.+
T Consensus 598 ~~~r~~~~~~~~q~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd--------------~~~~~~~i~~v 663 (1146)
T PRK12999 598 AELREAAPNVLFQMLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNW--------------VENMRVAIDAV 663 (1146)
T ss_pred HHHHHhCCCCeEEEEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCCh--------------HHHHHHHHHHH
Confidence 42 12457778887778899999999999999988 77889999999
Q ss_pred HHcCCeEEEEEeee--ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 146 LTNGIRVRGYISCV--VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~--~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
++.|..+.+.+++. ...|....++++++.++++++.++|+++|+|+||+|+++|.+++++++.+|+.+ +++|++|+|
T Consensus 664 k~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~H 742 (1146)
T PRK12999 664 RETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHTH 742 (1146)
T ss_pred HHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEEeC
Confidence 99999888888874 112223348999999999999999999999999999999999999999999998 479999999
Q ss_pred CCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC
Q psy12516 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN 303 (327)
Q Consensus 224 n~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~ 303 (327)
||.|||+||+++|+++||++||+|++|||+ ++||+++|+++.+|+..|+++++|+++|.+++++++++...-.|
T Consensus 743 nt~Gla~an~laA~~aGad~vD~av~glg~------~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y~~ 816 (1146)
T PRK12999 743 DTSGNGLATYLAAAEAGVDIVDVAVASMSG------LTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYYAP 816 (1146)
T ss_pred CCCchHHHHHHHHHHhCCCEEEecchhhcC------CcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHhhc
Confidence 999999999999999999999999999999 99999999999999999999999999999999999987644322
Q ss_pred h---hhhh--cccccc
Q psy12516 304 S---KVAK--ALPVKE 314 (327)
Q Consensus 304 ~---~~~~--~~~~~~ 314 (327)
. ..+- +++.|+
T Consensus 817 ~~~~~~~~~~~v~~~~ 832 (1146)
T PRK12999 817 FESGLKSPTTEVYLHE 832 (1146)
T ss_pred cCCCCCCCCcCeEEec
Confidence 1 2232 366676
|
|
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-28 Score=231.91 Aligned_cols=211 Identities=18% Similarity=0.262 Sum_probs=193.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
...+++++.+.++.+.|+.+...+++++.++....+...++++++.|+++...+..+ .+.+++++.++++.+.+
T Consensus 77 ~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~~------~~~~~~~~~~~~d~~~~ 150 (344)
T TIGR02146 77 VAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAEDT------FRSELADLLSIYETVGV 150 (344)
T ss_pred HHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEeeC------CCCCHHHHHHHHHHHHH
Confidence 345677888888889999999999999999999999999999999999988766653 47889999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|++.++++||.|.++|.++..++..+++..+.+++++|+|||+|+|++|+++|+.+|++++|+|++|||+ ++|
T Consensus 151 ~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~------~~G 224 (344)
T TIGR02146 151 FGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGE------RNG 224 (344)
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeC------CCC
Confidence 99999999999999999999999999999888889999999999999999999999999999999999999 889
Q ss_pred CccHHHHHHHHHh-CCCCCCCChhhHHHHHHHHHHhcCCCCCh---hhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEG-MGIETGADLTSLLRTGHYICGKLKKPSNS---KVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~-~g~~~~~d~~~l~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|.+++.++..|.. .|+. .+|++.+.++++.+....+.++++ .+|.+.|.|++ +|||.+|++++
T Consensus 225 ~~~l~~~~~~L~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~~~~g~h~~~~~~~~~~y~~~~ 298 (344)
T TIGR02146 225 ITPLGGILARLYYHTPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFTHKAGIHVKAILGNPRTYEFLP 298 (344)
T ss_pred CccHHHHHHHHHHhcCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhhcccchhHHHHhCCcccCCCCC
Confidence 9999999998886 5554 389999999999999999998874 79999999996 99999999986
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.1e-27 Score=230.44 Aligned_cols=255 Identities=20% Similarity=0.305 Sum_probs=222.1
Q ss_pred CEEEecCCc---cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc-
Q psy12516 13 YEISLGDTI---GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS- 88 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~- 88 (327)
+.+-+.||+ +++|.-.+|.+..++.+..|. ..-++.+..+.=.||...||++++.|.||||+|++.
T Consensus 534 ~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~----------~a~~lp~lfSlE~WGGATfDVamRFL~EdPWeRL~~l 603 (1149)
T COG1038 534 KAVLLTDTTFRDAHQSLLATRVRTHDLARIAPA----------TARALPQLFSLEMWGGATFDVAMRFLKEDPWERLERL 603 (1149)
T ss_pred cceeeeecchhhHHHHHHHHHHhhhhhhhhhHH----------HHHhhhhhhchhhhCCchHHHHHHHhccCHHHHHHHH
Confidence 578999999 999999999999999888762 111222333333478899999999999999987642
Q ss_pred ---------------C-----CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 89 ---------------G-----NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 89 ---------------g-----n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
. ..+++.++..+.+.+.+.|+|.+++|+++++ +++++..++..++.
T Consensus 604 Rk~~PNvlfQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNw--------------v~~M~vaidAV~e~ 669 (1149)
T COG1038 604 RKAVPNVLFQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNW--------------VEQMRVAIDAVREA 669 (1149)
T ss_pred HHhCCchHHHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcc--------------hhhhhhHHHHHHhc
Confidence 1 2568889998999999999999999999987 88899999999999
Q ss_pred CCeEEEEEeeeccC---CCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC
Q psy12516 149 GIRVRGYISCVVGC---PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT 225 (327)
Q Consensus 149 Gi~v~~~l~~~~g~---~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~ 225 (327)
|.-+++++++. |. |....++.+++.++++.+.++|+.++.++|+.|++.|...+.+++.||+.+ ++||++|+||+
T Consensus 670 gkv~EatiCYT-GDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDT 747 (1149)
T COG1038 670 GKVAEATICYT-GDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDT 747 (1149)
T ss_pred CCeEEEEEEec-cccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCC
Confidence 98888888873 32 223467999999999999999999999999999999999999999999998 57999999999
Q ss_pred cCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 226 YGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 226 ~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
-|.+++.+++|+++|+|.||+++..|.+ -+.++++-.++.+|.....++++|.+.+.+++.|++..-.
T Consensus 748 sG~~~at~~aA~~AGvDivD~A~~smsG------~TSQPsl~si~~al~~~~r~~~ld~~~~~~i~~YWe~vR~ 815 (1149)
T COG1038 748 SGNGVATYLAAVEAGVDIVDVAMASMSG------LTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVRK 815 (1149)
T ss_pred CccHHHHHHHHHHcCCchhhhhhhhccC------CCCCccHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988 8999999999999999888999999999999999998644
|
|
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-27 Score=220.35 Aligned_cols=114 Identities=68% Similarity=1.092 Sum_probs=109.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.+|..++++|+|||+||+++|+++|+++|+++||++++|||||
T Consensus 201 ~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd~sv~GlGec 280 (347)
T PLN02746 201 YVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQALANILVSLQMGISTVDSSVAGLGGC 280 (347)
T ss_pred HHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccCC
Confidence 67899999999999999999999999999999999999986789999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||.++++||+++|+++.+|+.+++++|+|.-.+.
T Consensus 281 Pfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~ 314 (347)
T PLN02746 281 PYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLM 314 (347)
T ss_pred CCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHH
Confidence 9999999999999999999999999999987765
|
|
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=216.31 Aligned_cols=114 Identities=63% Similarity=1.064 Sum_probs=109.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++|||||
T Consensus 159 ~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGec 238 (287)
T PRK05692 159 DVAERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGC 238 (287)
T ss_pred HHHHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCC
Confidence 67899999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||.++++||+++|+++.+|+.+++++|+|.-.+.
T Consensus 239 pfa~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~ 272 (287)
T PRK05692 239 PYAPGASGNVATEDVLYMLHGLGIETGIDLDKLV 272 (287)
T ss_pred CCCCCccccccHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999999999999999999999999877655
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=211.56 Aligned_cols=114 Identities=60% Similarity=0.977 Sum_probs=109.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.+|++++++|+|||+||+++|+++|+++|+++||+|++|||+|
T Consensus 153 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgc 232 (274)
T cd07938 153 EVAERLLDLGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGC 232 (274)
T ss_pred HHHHHHHHcCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCC
Confidence 67889999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||.++++||+++|+++.+|+..++++|+|...+.
T Consensus 233 pfa~eraGN~~~E~lv~~L~~~g~~t~idl~~l~ 266 (274)
T cd07938 233 PFAPGATGNVATEDLVYMLEGMGIETGIDLDKLL 266 (274)
T ss_pred CCCCCccCCcCHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999999999999999998999999887655
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >KOG0369|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-26 Score=220.87 Aligned_cols=256 Identities=23% Similarity=0.305 Sum_probs=219.3
Q ss_pred EEEecCCc---cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCcc-
Q psy12516 14 EISLGDTI---GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGAS- 88 (327)
Q Consensus 14 ~i~~~Dt~---G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~- 88 (327)
..-|.||+ -.+|.-.+|.+.-++....|.+ .|+..| +-.+ -||...||++++.|.||||+|.+.
T Consensus 559 g~llmDTT~RDAHQSLLATRVRthDl~~IaPyv-----ah~f~~------lfslE~WGGATFDVamRFLhEcPWeRL~~l 627 (1176)
T KOG0369|consen 559 GLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYV-----AHAFAG------LFSLENWGGATFDVAMRFLHECPWERLREL 627 (1176)
T ss_pred CceEeechhHHHHHHHHHHHhhhhhhhhcchHH-----HHHhhh------hhhhhhcCCchhhHHHHHHhcChHHHHHHH
Confidence 57789998 7788888888888888877732 232222 1233 378899999999999999987742
Q ss_pred --------------C-C-----CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 89 --------------G-N-----VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 89 --------------g-n-----~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
| | ..++.++..+-+.+.++|+|.+++|+++++ +.++.--++.+++.
T Consensus 628 RkliPNIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~--------------lpnl~lGmeAagkA 693 (1176)
T KOG0369|consen 628 RKLIPNIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNY--------------LPNLLLGMEAAGKA 693 (1176)
T ss_pred HHhCCCCcHHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhh--------------hhhhhhhHhhhhcc
Confidence 1 1 357788888889999999999999999987 77777778899999
Q ss_pred CCeEEEEEeeecc--CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCc
Q psy12516 149 GIRVRGYISCVVG--CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTY 226 (327)
Q Consensus 149 Gi~v~~~l~~~~g--~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~ 226 (327)
|.-|++.+++.-- .|--..++.+++.++++++.++|..+++|+|+.|++.|+...-++..+|.++|++||++|+||+-
T Consensus 694 GGVVEAai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDts 773 (1176)
T KOG0369|consen 694 GGVVEAAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTS 773 (1176)
T ss_pred CCeEEEEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccCCc
Confidence 9999999988321 12223589999999999999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCC
Q psy12516 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKK 300 (327)
Q Consensus 227 g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~ 300 (327)
|-++|.-+++..+|+|.||+++..|.+ -+.++++-.+++.|+....+++++++.+.+.+.|+++.-..
T Consensus 774 GagVAsMlaca~AGADVVDvA~dSMSG------mTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~~R~L 841 (1176)
T KOG0369|consen 774 GAGVASMLACALAGADVVDVAVDSMSG------MTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQMRLL 841 (1176)
T ss_pred cHHHHHHHHHHHcCCceeeeecccccc------cccCCchhhhhhhccCCcccCCCchHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998 89999999999999988899999999999999999986443
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.1e-24 Score=206.49 Aligned_cols=199 Identities=21% Similarity=0.251 Sum_probs=154.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.++ +++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 158 ~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAieaGad~vD~sv~glg~- 235 (448)
T PRK12331 158 KLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIEAGADIIDTAISPFAG- 235 (448)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHHcCCCEEEeeccccCC-
Confidence 6789999999999999999999999999999999999987 99999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC-CeEEEEEeeec
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG-IRVRGYISCVV 160 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G-i~v~~~l~~~~ 160 (327)
++||+++|+++.+|+..++++|+|.-.+.. +++. ++ ++.++..+.+ +.... ....
T Consensus 236 -----gaGN~~tE~lv~~L~~~g~~tgidl~~L~~-~~~~-------------~~---~~r~~y~~~~~~~~~~--~~~~ 291 (448)
T PRK12331 236 -----GTSQPATESMVAALQDLGYDTGLDLEELSE-IAEY-------------FN---PIRDHYREEGILNPKV--KDVE 291 (448)
T ss_pred -----CcCCHhHHHHHHHHHhcCCCCCCCHHHHHH-HHHH-------------HH---HHHHHHHhhccCCccc--ccCC
Confidence 999999999999999999999999776552 2221 22 2222222322 21110 0000
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTA 236 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a 236 (327)
..-+.++.+...+.++..|+.+.|... .=.+|.+.+..+++.++.+++..-+.. ---+|+-|.+.+
T Consensus 292 ~~v~~~~~PGG~~snl~~ql~~~g~~~----------~~~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nvl~g 358 (448)
T PRK12331 292 PKTLIYQVPGGMLSNLLSQLKEQGAED----------KYEEVLKEVPKVRADLGYPPLVTPLSQMVGTQALMNVISG 358 (448)
T ss_pred cCeeecCCCcchHhHHHHHHHHCCcHh----------HHHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHHhcc
Confidence 112346789999999999999988621 124677788899998887766665555 345788888753
|
|
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.7e-24 Score=207.15 Aligned_cols=197 Identities=19% Similarity=0.207 Sum_probs=153.6
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.++ +++++|+|||+|++++|+++|+++|+++||+|++|+|+
T Consensus 156 ~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAieaGad~vD~sv~~~g~ 234 (467)
T PRK14041 156 LEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEAGADMFDTAISPFSM 234 (467)
T ss_pred HHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeeccccCC
Confidence 36789999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVV 160 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~ 160 (327)
++||+++|+++.+|+..++++|+|...+. .+++. ++.+++.-.. -+.+..- ..
T Consensus 235 ------gagN~atE~lv~~L~~~g~~tgiDl~~L~-~~~~~-------------~~~vr~~y~~-~~~~~~~------~~ 287 (467)
T PRK14041 235 ------GTSQPPFESMYYAFRENGKETDFDRKALK-FLVEY-------------FTKVREKYSE-YDVGMKS------PD 287 (467)
T ss_pred ------CCCChhHHHHHHHHHhcCCCCCcCHHHHH-HHHHH-------------HHHHHHHHhh-cCCCCCC------CC
Confidence 99999999999999999999999987755 22221 2222211110 0122210 00
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTA 236 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a 236 (327)
..-+.++.+...+.++..|+.+.|. |++ .++.+.+..+++.++.+++..-+.. -.-+|+-|.+..
T Consensus 288 ~~v~~~q~PGG~~snl~~Ql~~~g~~~~~-----------~~v~~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~Nvl~g 354 (467)
T PRK14041 288 SRILVSQIPGGMYSNLVKQLKEQKMLHKL-----------DKVLEEVPRVRKDLGYPPLVTPTSQIVGVQAVLNVLTG 354 (467)
T ss_pred cCeeeCCCCcchHHHHHHHHHHCCcHhHH-----------HHHHHHHHHHHHHcCCCCcCCChhHHHHHHHHHhhcCh
Confidence 1123467899999999999999876 232 4677788899998877665555444 335677788864
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.9e-24 Score=205.79 Aligned_cols=196 Identities=20% Similarity=0.300 Sum_probs=156.5
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.+| ++++++|+|||+|++++|+++|+++|+++||+|++|||
T Consensus 158 ~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~laAieAGad~vDtai~Glg 237 (499)
T PRK12330 158 VEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMKAIEAGVDVVDTAISSMS 237 (499)
T ss_pred HHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEEeeccccc
Confidence 36889999999999999999999999999999999999996 79999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHH-H-HHHcCCeEEEEEe
Q psy12516 80 GCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVS-T-ALTNGIRVRGYIS 157 (327)
Q Consensus 80 ~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~-~-a~~~Gi~v~~~l~ 157 (327)
+ ++||+++|+++.+|+..+.++|+|...+.. +++. +..+++... + .+-.|..+
T Consensus 238 ~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~-i~~~-------------~~~vr~~y~~~~~~~~~~d~----- 292 (499)
T PRK12330 238 L------GPGHNPTESLVEMLEGTGYTTKLDMDRLLK-IRDH-------------FKKVRPKYKEFESKTTGVET----- 292 (499)
T ss_pred c------cccchhHHHHHHHHHhcCCCCCCCHHHHHH-HHHH-------------HHHHHHHHhcccccccCCCC-----
Confidence 9 999999999999999999999999877653 3332 222221111 1 01112221
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILT 235 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~ 235 (327)
..+.++.+...+.++..++.+.|. |+ =.++.+.+..+++.++.+++..-+..- --+|+-|.+.
T Consensus 293 ----~v~~~qiPGGm~snl~~Ql~~~g~~d~-----------~~ev~~e~~~Vr~~lG~~~~VTP~Sqivg~qA~~nv~~ 357 (499)
T PRK12330 293 ----EIFKSQIPGGMLSNMESQLKQQGAGDR-----------MDEVLEEVPRVRKDAGYPPLVTPSSQIVGTQAVFNVLM 357 (499)
T ss_pred ----ccccCCCCCCchhhHHHHHHHcChhhH-----------HHHHHHHHHHHHHHcCCCCeeCChhHHHHHHHHHHHHc
Confidence 223456888999999999999885 22 257778899999998887777666653 4578888876
Q ss_pred H
Q psy12516 236 A 236 (327)
Q Consensus 236 a 236 (327)
.
T Consensus 358 g 358 (499)
T PRK12330 358 G 358 (499)
T ss_pred C
Confidence 5
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-23 Score=201.18 Aligned_cols=199 Identities=17% Similarity=0.214 Sum_probs=154.3
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|.++.++++.+++. +++++++|+|||.|++++|+++|+++|+++||+|++|+|+
T Consensus 166 ~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~~-~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ai~g~g~ 244 (468)
T PRK12581 166 LSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKAM-TNLPLIVHTHATSGISQMTYLAAVEAGADRIDTALSPFSE 244 (468)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHhc-cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEeeccccCC
Confidence 367899999999999999999999999999999999884 5699999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC-CeEEEEEeee
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG-IRVRGYISCV 159 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G-i~v~~~l~~~ 159 (327)
++||+++|+++.+|+..++++|+|...+... ++ .++++.++....| ++.. ....
T Consensus 245 ------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~-a~----------------~~~~vr~~y~~~~~~~~~--~~~~ 299 (468)
T PRK12581 245 ------GTSQPATESMYLALKEAGYDITLDETLLEQA-AN----------------HLRQARQKYLADGILDPS--LLFP 299 (468)
T ss_pred ------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHH-HH----------------HHHHHHHHhcccccCCCc--cCCC
Confidence 9999999999999999999999998765532 22 1222222222212 1100 0000
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHHH
Q psy12516 160 VGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILTA 236 (327)
Q Consensus 160 ~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~a 236 (327)
...-+.++.+...+.++..|+.+.|. |+ =.+|.+.+..+++.++.+++..-+..- --+|+.|.+..
T Consensus 300 d~~v~~hqiPGGm~snl~~Ql~~~g~~dr-----------~~ev~~e~~~V~~~lG~p~~VTP~Sqivg~qA~~nV~~g 367 (468)
T PRK12581 300 DPRTLQYQVPGGMLSNMLSQLKQANAESK-----------LEEVLAEVPRVRKDLGYPPLVTPLSQMVGTQAAMNVILG 367 (468)
T ss_pred CcceeeCCCCcchHHHHHHHHHHCCcHhh-----------HHHHHHHHHHHHHHcCCCCEECChhHHHHHHHHHHHHcC
Confidence 00113457899999999999999987 33 257778889999998887777665553 35778887754
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.3e-24 Score=203.14 Aligned_cols=157 Identities=27% Similarity=0.451 Sum_probs=127.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|+++|+|+||+|.++|++++++++.+++.+ ++++++|+|||+|||++|+++|+++|+++||+|++||||
T Consensus 149 ~~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe- 226 (378)
T PRK11858 149 EFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE- 226 (378)
T ss_pred HHHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc-
Confidence 678889999999999999999999999999999999988 589999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhh-hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHH---HHHHcCCeEEEEEe
Q psy12516 82 PYARGASGNVATEDLVYMLE-GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVS---TALTNGIRVRGYIS 157 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~-~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~---~a~~~Gi~v~~~l~ 157 (327)
++||+++|+++.+|+ ..++++|+|.-.+. .+++...+. .+.. +...++++. +++++|+|+.+.+.
T Consensus 227 -----raGNa~lE~vv~~L~~~~g~~~~idl~~l~-~~s~~v~~~-~~~~----~~~~~pivG~~~F~h~sGiH~~gi~k 295 (378)
T PRK11858 227 -----RAGNAALEEVVMALKYLYGIDLGIDTERLY-ELSRLVSKA-SGIP----VPPNKAIVGENAFAHESGIHVDGVLK 295 (378)
T ss_pred -----cccCccHHHHHHHHHHHhCCCCCcCHHHHH-HHHHHHHHH-hCcC----CCCCCccccchhhhhhccccHHHHhC
Confidence 999999999999998 57899999987766 334433222 2222 222344443 68999999987766
Q ss_pred eeccCCCCCCCChHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~ 174 (327)
.. ..|+ .++|+.+.
T Consensus 296 ~~--~~Ye-~~~P~~vG 309 (378)
T PRK11858 296 NP--LTYE-PFLPEEVG 309 (378)
T ss_pred Cc--cccc-ccCHHHcC
Confidence 53 1233 46776555
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-23 Score=190.42 Aligned_cols=108 Identities=24% Similarity=0.415 Sum_probs=102.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+++|+|+||+|.++|+++.++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 151 ~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe- 229 (280)
T cd07945 151 QLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE- 229 (280)
T ss_pred HHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc-
Confidence 6788999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhh-hhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLE-GKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~-~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+ .+++++|+|...+.
T Consensus 230 -----~aGN~~~E~~v~~L~~~~g~~t~idl~~l~ 259 (280)
T cd07945 230 -----RAGNAPLASVIAVLKDKLKVKTNIDEKRLN 259 (280)
T ss_pred -----cccCccHHHHHHHHHHhcCCCcCcCHHHHH
Confidence 999999999999995 47999999877655
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.6e-23 Score=203.27 Aligned_cols=199 Identities=18% Similarity=0.187 Sum_probs=154.1
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.++ +++++|+|||.|++++|+++|+++|+++||++++|||+
T Consensus 157 ~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAieaGad~iD~ai~glGg 235 (596)
T PRK14042 157 LELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLAGCNHIDTAISSFSG 235 (596)
T ss_pred HHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHhCCCEEEeccccccC
Confidence 36789999999999999999999999999999999999986 99999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVV 160 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~ 160 (327)
++||+++|+++.+|+..++++|+|...+.. +++. +..+++.-... +.+.. ...
T Consensus 236 ------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~-~~~~-------------~~~vr~~y~~~-~~~~~------~~~ 288 (596)
T PRK14042 236 ------GASHPPTEALVAALTDTPYDTELDLNILLE-IDDY-------------FKAVRKKYSQF-ESEAQ------NID 288 (596)
T ss_pred ------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHH-HHHH-------------HHHHHHHHhhc-CCccc------cCC
Confidence 789999999999999999999998876542 2221 22222111110 11111 000
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTAME 238 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a~~ 238 (327)
..-+.++.+...+.++..|+.+.|. |+ =.++.+.+..+++.+..+++..-+.. -.-+|+-|.+..-+
T Consensus 289 ~~v~~hq~PGG~~snl~~Ql~~~g~~d~-----------~~ev~~e~~~v~~~lG~~~~VTP~Sqivg~qA~~Nvl~g~r 357 (596)
T PRK14042 289 PRVQLYQVPGGMISNLYNQLKEQNALDK-----------MDAVHKEIPRVRKDLGYPPLVTPTSQVVGTQAVINVLTGER 357 (596)
T ss_pred cceeecCCCcchhhHHHHHHHHCCcHhH-----------HHHHHHHHHHHHHHcCCCCeECCcCcEEEEEehhhccChhh
Confidence 0113457899999999999999875 22 24677788899998877665555544 34577888887543
|
|
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=188.90 Aligned_cols=107 Identities=25% Similarity=0.374 Sum_probs=102.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|++.|+|+||+|.++|++++++++.+++.+| +++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 143 ~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~- 220 (259)
T cd07939 143 EFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE- 220 (259)
T ss_pred HHHHHHHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc-
Confidence 6788999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhh-hcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGK-SMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~-~~~~Gid~i~l~ 115 (327)
++||+++|+++.+++.+ +.++|+|...+.
T Consensus 221 -----~aGN~~tE~lv~~l~~~~g~~~~idl~~l~ 250 (259)
T cd07939 221 -----RAGNAALEEVVMALKHLYGRDTGIDTTRLP 250 (259)
T ss_pred -----cccCcCHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 99999999999999987 999999877655
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-23 Score=189.13 Aligned_cols=108 Identities=28% Similarity=0.423 Sum_probs=102.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||+|.++|++++++++.+++.+|.+++++|+|||+|+|++|+++|+++|+++||+|++|||+
T Consensus 145 ~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~GlG~- 223 (263)
T cd07943 145 EQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAGLGA- 223 (263)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeecccccC-
Confidence 6788999999999999999999999999999999999998559999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+..++++++|...+.
T Consensus 224 -----~aGN~~~E~lv~~L~~~g~~~~idl~~l~ 252 (263)
T cd07943 224 -----GAGNTPLEVLVAVLERMGIETGIDLYKLM 252 (263)
T ss_pred -----CcCCccHHHHHHHHHhcCCCCCCCHHHHH
Confidence 89999999999999888888888877665
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-23 Score=204.01 Aligned_cols=196 Identities=20% Similarity=0.263 Sum_probs=153.9
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|++++++++.+++.++ +++++|+|||.|++++|+++|+++|+++||+|++|||+
T Consensus 152 ~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~~vd~ai~GlG~ 230 (582)
T TIGR01108 152 LDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGADGIDTAISSMSG 230 (582)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCCEEEeccccccc
Confidence 36789999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-H---cCCeEEEEE
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTAL-T---NGIRVRGYI 156 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~-~---~Gi~v~~~l 156 (327)
++||+++|+++.+|+..+.++|+|.-.+... ++. ++.+++ .|.+ + .|....+
T Consensus 231 ------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l-~~~-------------~~~v~~--~Y~~~~~~~~~~~~~v-- 286 (582)
T TIGR01108 231 ------GTSHPPTETMVAALRGTGYDTGLDIELLLEI-AAY-------------FREVRK--KYSQFEGQLKGPDSRI-- 286 (582)
T ss_pred ------cccChhHHHHHHHHHhcCCCcccCHHHHHHH-HHH-------------HHHHHH--HhhcCCCcccCCCccE--
Confidence 9999999999999999999999987765522 222 223322 1211 1 1222222
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHH
Q psy12516 157 SCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILT 235 (327)
Q Consensus 157 ~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~ 235 (327)
+.+..+...+.++..++.+.|.. | .=.++.+.++.+++.+..+++..-+..- .-+|+-|.+.
T Consensus 287 -------~~~e~pGG~~snl~~ql~~~g~~-----~-----~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nvl~ 349 (582)
T TIGR01108 287 -------LVAQVPGGMLSNLESQLKEQNAL-----D-----KLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVLNVLT 349 (582)
T ss_pred -------EEEcCCCchHHHHHHHHHHCCCH-----H-----HHHHHHHHHHHHHHHcCCCCeECCccHHHHHHHHHhhcC
Confidence 23467889999999999999874 1 1235666678888888776666655553 4578888886
Q ss_pred HHH
Q psy12516 236 AME 238 (327)
Q Consensus 236 a~~ 238 (327)
.-+
T Consensus 350 ~~r 352 (582)
T TIGR01108 350 GER 352 (582)
T ss_pred HHh
Confidence 543
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.8e-24 Score=201.32 Aligned_cols=157 Identities=24% Similarity=0.347 Sum_probs=125.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||+|.++|++++++++.+++.++ +++++|+|||+|||++|+++|+++|+++||+|++||||
T Consensus 146 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe- 223 (365)
T TIGR02660 146 ELAEVAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE- 223 (365)
T ss_pred HHHHHHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc-
Confidence 5788899999999999999999999999999999999886 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHh-hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEEEe
Q psy12516 82 PYARGASGNVATEDLVYML-EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGYIS 157 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l-~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~l~ 157 (327)
++||+++|+++.+| ...+.++++|.-.+. .+++...+ ..+... ..-++++ .+++++|+|+.+.+.
T Consensus 224 -----raGN~~lE~lv~~L~~~~g~~~~idl~~l~-~~s~~v~~-~~~~~~----~~~~p~vG~~~f~h~sGiH~~~i~k 292 (365)
T TIGR02660 224 -----RAGNAALEEVAMALKRLLGRDTGIDTSRLP-ALSQLVAR-ASGRPI----PPQKPVVGESVFTHESGIHVDGLLK 292 (365)
T ss_pred -----ccccCCHHHHHHHHHHhcCCCCCcCHHHHH-HHHHHHHH-HhCCCC----CCCCCcccHhHHHhccchhHHHHhC
Confidence 99999999999999 667899999887765 33443322 122221 1123333 368899999877666
Q ss_pred eeccCCCCCCCChHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~ 174 (327)
.. ..|+ .++|+.+.
T Consensus 293 ~~--~~Ye-~~~P~~vG 306 (365)
T TIGR02660 293 DP--RTYE-PFDPELVG 306 (365)
T ss_pred Cc--ccCC-CcCHHHcC
Confidence 53 1233 36666444
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.1e-23 Score=199.88 Aligned_cols=157 Identities=27% Similarity=0.444 Sum_probs=127.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||+|.++|.+++++++.+++.++ ++++||+|||+||+++|+++|+++|+++||+|++|||+
T Consensus 145 ~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe- 222 (363)
T TIGR02090 145 KVFKRAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE- 222 (363)
T ss_pred HHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc-
Confidence 5788899999999999999999999999999999999987 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEEEe
Q psy12516 82 PYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGYIS 157 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~l~ 157 (327)
++||+++|+++.+|+. .+.++++|.-.+. .+++...+. .+.. +...++++ .+++++|+|+.+.+.
T Consensus 223 -----raGN~~lE~vv~~L~~~~g~~~~idl~~l~-~~~~~~~~~-~~~~----~~~~~pivG~~~f~h~sGiH~~~i~k 291 (363)
T TIGR02090 223 -----RAGNAALEEVVMALKYLYGVKTKIKTEKLY-ETSRLVSEL-SGVK----VPPNKAIVGENAFAHESGIHVDGVIE 291 (363)
T ss_pred -----ccccccHHHHHHHHHHhhCCCCCcCHHHHH-HHHHHHHHH-HCcC----CCCCCCchhHHHHHHhcchhHHHHcC
Confidence 9999999999999987 7999999987765 334433222 2222 11223343 368999999887766
Q ss_pred eeccCCCCCCCChHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~ 174 (327)
... .|+ .++|+.+.
T Consensus 292 ~~~--~Ye-~~~P~~vG 305 (363)
T TIGR02090 292 NPL--TYE-PISPEVVG 305 (363)
T ss_pred Ccc--cCC-CCCHHHcC
Confidence 531 233 46776555
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.3e-23 Score=202.02 Aligned_cols=158 Identities=23% Similarity=0.435 Sum_probs=127.7
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++++.++|+|+|+|+||+|.++|+++.++++.+++.+| ++++++|+|||+|||++|+++|+++|+++||+|++||
T Consensus 243 ~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~Tv~Gi 322 (503)
T PLN03228 243 KILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICAGARQVEVTINGI 322 (503)
T ss_pred HHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHhCCCEEEEecccc
Confidence 5788899999999999999999999999999999999886 4789999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhh------hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcC
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEG------KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNG 149 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~------~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~G 149 (327)
|| |+||+++|+++.+|+. .++++++|.-.+. .+++...+. .+... ...++++ .+++++|
T Consensus 323 GE------RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~-~ls~~V~~~-~g~~i----~~~kPivG~naF~heSG 390 (503)
T PLN03228 323 GE------RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIM-ATSKMVQEY-TGMYV----QPHKPIVGANCFVHESG 390 (503)
T ss_pred cc------ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCcccHHHHHhccc
Confidence 99 9999999999999876 3567788876655 444443332 23222 2234444 4789999
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~ 174 (327)
+|+.+.+.... .|+ .++|+.+.
T Consensus 391 IH~dgilK~p~--tYe-~~~Pe~vG 412 (503)
T PLN03228 391 IHQDGILKNRS--TYE-ILSPEDIG 412 (503)
T ss_pred hhHHHHhCCcc--ccc-CCCHHHhC
Confidence 99988777642 233 47787765
|
|
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=205.45 Aligned_cols=158 Identities=22% Similarity=0.440 Sum_probs=126.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++.+.++|+++|+|+||+|.++|+++.++++.+++.+|. +++++|+|||+|||+||+++|+++|+++||+|++||
T Consensus 244 ~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGl 323 (632)
T PLN02321 244 RILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHAGARQVEVTINGI 323 (632)
T ss_pred HHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 67889999999999999999999999999999999999874 669999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhh------hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHH---HHHHcC
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEG------KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVS---TALTNG 149 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~------~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~---~a~~~G 149 (327)
|| |+||+++|+++.+|+. .++.+|+|.-.+. .+++...+. .++. +...++++. +++++|
T Consensus 324 GE------RaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~-~~s~~V~~~-~g~~----v~~~kPiVG~naFaheSG 391 (632)
T PLN02321 324 GE------RAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHIT-PTSKMVSEY-TGMQ----VQPHKAIVGANAFAHESG 391 (632)
T ss_pred cc------cccCccHHHHHHHHHhccCccccCcccccCHHHHH-HHHHHHHHH-hCcC----CCCCcccccccceehhcC
Confidence 99 9999999999999875 3577888876655 444443322 3333 222345553 689999
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~ 174 (327)
+|+.+.+.... .|+ .++|+.+.
T Consensus 392 IH~dgvlk~~~--tYe-~i~Pe~VG 413 (632)
T PLN02321 392 IHQDGMLKHKG--TYE-IISPEDIG 413 (632)
T ss_pred ccHHHHccCcc--ccc-ccCHHHhC
Confidence 99988776532 233 46666664
|
|
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.8e-23 Score=187.72 Aligned_cols=107 Identities=29% Similarity=0.409 Sum_probs=101.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.++.++++.+++.++ +++++|+|||+|++++|+++|+++|+++||+|++||||
T Consensus 153 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd~sv~GlG~- 230 (275)
T cd07937 153 KLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVDIVDTAISPLSG- 230 (275)
T ss_pred HHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccC-
Confidence 5788999999999999999999999999999999999998 99999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+.++.++++|...+.
T Consensus 231 -----~aGN~~~E~l~~~L~~~g~~~~~dl~~l~ 259 (275)
T cd07937 231 -----GTSQPSTESMVAALRGTGRDTGLDLEKLE 259 (275)
T ss_pred -----CcCChhHHHHHHHHHccCCCCCCCHHHHH
Confidence 89999999999999988888888876644
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.5e-23 Score=188.46 Aligned_cols=108 Identities=30% Similarity=0.542 Sum_probs=102.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC--CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA--DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~--~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
++++++.++|++.|+|+||+|.++|++++++++.+++.+|+ ++++||+|||+|++++|+++|+++|+++||+|+.|||
T Consensus 147 ~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG 226 (268)
T cd07940 147 EVVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIG 226 (268)
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeeccc
Confidence 57889999999999999999999999999999999999986 8999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCcHHHHHHHhhhhh----cccCcchhhhh
Q psy12516 80 GCPYARGASGNVATEDLVYMLEGKS----MQCGVKEIAVF 115 (327)
Q Consensus 80 ~~p~~~~~~gn~~~e~v~~~l~~~~----~~~Gid~i~l~ 115 (327)
+ ++||+++|+++.+|..++ +++|+|..++.
T Consensus 227 ~------~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~ 260 (268)
T cd07940 227 E------RAGNAALEEVVMALKTRYDYYGVETGIDTEELY 260 (268)
T ss_pred c------ccccccHHHHHHHHHhcccccCCCCCcCHHHHH
Confidence 9 999999999999998876 88888877655
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.5e-23 Score=186.03 Aligned_cols=109 Identities=23% Similarity=0.355 Sum_probs=101.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++|++.|+|+||+|.++|++++++++.+++.++. ++++||+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 142 ~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G~ 221 (266)
T cd07944 142 ELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMGR 221 (266)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCCC
Confidence 67889999999999999999999999999999999999875 89999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhh
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFAS 117 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~ 117 (327)
++||+++|+++..|+.+ .++++|...+...
T Consensus 222 ------~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~ 251 (266)
T cd07944 222 ------GAGNLPTELLLDYLNNK-FGKKYNLEPVLEL 251 (266)
T ss_pred ------CcCcHHHHHHHHHHHHh-hccCCCHHHHHHH
Confidence 99999999999999887 7888887776643
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.7e-23 Score=191.88 Aligned_cols=113 Identities=27% Similarity=0.424 Sum_probs=106.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhc-CCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~-~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++|++.|+++||+|.++|++++++++.+++.+ |+++++||+|||+|++++|+++|+++|+++||+|+.|||+
T Consensus 148 ~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~GlG~ 227 (337)
T PRK08195 148 EQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDGSLAGLGA 227 (337)
T ss_pred HHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEecChhhcc
Confidence 678899999999999999999999999999999999998 5799999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
++||+++|+++..++++++++|+|...+.....+
T Consensus 228 ------~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~ 261 (337)
T PRK08195 228 ------GAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAED 261 (337)
T ss_pred ------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHH
Confidence 9999999999999999999999999887755444
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.6e-22 Score=199.88 Aligned_cols=227 Identities=22% Similarity=0.264 Sum_probs=162.8
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.++ ++|++|+|||.|++++|+++|+++|+++||+|++|||+
T Consensus 159 ~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~- 236 (593)
T PRK14040 159 DLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSM- 236 (593)
T ss_pred HHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccc-
Confidence 6789999999999999999999999999999999999984 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH--HHcCCeEEEEEeee
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA--LTNGIRVRGYISCV 159 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a--~~~Gi~v~~~l~~~ 159 (327)
++||+++|+++.+|+..+.++|+|.-.+. .+++. +..+++.-+.. .-.|....+
T Consensus 237 -----~~Gn~~le~vv~~L~~~~~~~gidl~~l~-~is~~-------------~~~v~~~Y~~~~~~~~~~~~~v----- 292 (593)
T PRK14040 237 -----TYGHSATETLVATLEGTERDTGLDILKLE-EIAAY-------------FREVRKKYAKFEGQLKGVDSRI----- 292 (593)
T ss_pred -----cccchhHHHHHHHHHhcCCCcCCCHHHHH-HHHHH-------------HHHHHHHhccCCcccccCcccE-----
Confidence 99999999999999988888988875533 23322 22221111110 001222221
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHHHHH
Q psy12516 160 VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILTAME 238 (327)
Q Consensus 160 ~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~a~~ 238 (327)
+.+..+...+.++..++.+.|.. -.=.++.+.++.+++.++.+++..-+..- .-+|+-|.+..-+
T Consensus 293 ----~~~e~PGG~~Snl~~ql~~~g~~----------~~~~evl~e~~~v~~~lG~~~~VTP~Sqivg~~A~~N~l~~~r 358 (593)
T PRK14040 293 ----LVAQVPGGMLTNMESQLKEQGAA----------DKLDEVLAEIPRVREDLGFIPLVTPTSQIVGTQAVLNVLTGER 358 (593)
T ss_pred ----EEEcCCCchHHHHHHHHHHCCCH----------HHHHHHHHHHHHHHHHcCCCCeECChhHHHHHHHHHhcCChHh
Confidence 23467889999999999999875 01235666778888888776666655543 3567778876533
Q ss_pred hcC---ceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 239 FGI---SVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 239 ~G~---~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
.-. ..++--.+-+|. ..|-.+-|-.-..|+
T Consensus 359 ~~~~~~~v~~~~~G~~G~------~p~~~~~~~~~~~l~ 391 (593)
T PRK14040 359 YKTITKETAGVLKGEYGA------TPAPVNAELQARVLE 391 (593)
T ss_pred heeCCHHHHHHhCcCCCC------CCCCCCHHHHHHHhC
Confidence 221 113333444555 244455553334554
|
|
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-23 Score=205.40 Aligned_cols=146 Identities=27% Similarity=0.485 Sum_probs=121.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++.+.++|+++|+|+||+|.++|+++.++++.+++.+|. +++++|+|||+|||+||+++|+++|+++||+|++||
T Consensus 153 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv~Gl 232 (513)
T PRK00915 153 RVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTINGI 232 (513)
T ss_pred HHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEeecc
Confidence 67888999999999999999999999999999999999885 899999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhhh----hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCe
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEGK----SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIR 151 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~~----~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~ 151 (327)
|| |+||+++|+++..|+.+ ++++++|.-.+. .+++...+. .+... ..-++++ .+++++|+|
T Consensus 233 GE------RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~-~~s~~v~~~-~~~~~----~~~~PivG~~aF~h~sGiH 300 (513)
T PRK00915 233 GE------RAGNAALEEVVMALKTRKDIYGVETGINTEEIY-RTSRLVSQL-TGMPV----QPNKAIVGANAFAHESGIH 300 (513)
T ss_pred cc------cccCccHHHHHHHHHhhhcccCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCccChhHHHhccchh
Confidence 99 99999999999998765 788888876655 444443322 22221 2233444 478999999
Q ss_pred EEEEEeee
Q psy12516 152 VRGYISCV 159 (327)
Q Consensus 152 v~~~l~~~ 159 (327)
+.+.+...
T Consensus 301 ~dgi~k~~ 308 (513)
T PRK00915 301 QDGVLKNR 308 (513)
T ss_pred HHHHcCCc
Confidence 88776653
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=190.54 Aligned_cols=114 Identities=24% Similarity=0.386 Sum_probs=106.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++|++.|+++||+|.++|+++.++++.+++.++ +++++||+|||+|++++|+++|+++|+++||+|+.|||+
T Consensus 147 ~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~Sl~G~G~ 226 (333)
T TIGR03217 147 EQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASLRGLGA 226 (333)
T ss_pred HHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEeecccccc
Confidence 6788999999999999999999999999999999999986 589999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHH
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEM 121 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~ 121 (327)
++||+++|.++.+++++++++|+|...+.....+.
T Consensus 227 ------~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~ 261 (333)
T TIGR03217 227 ------GAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDI 261 (333)
T ss_pred ------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999998877655544
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.1e-22 Score=197.19 Aligned_cols=195 Identities=21% Similarity=0.259 Sum_probs=149.8
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|.|+|+||+|.++|.+++++++.+++.++ +++++|+|||.|++++|+++|+++|+++||+|++|+|+
T Consensus 157 ~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ai~g~g~ 235 (592)
T PRK09282 157 VELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVEAGVDIIDTAISPLAF 235 (592)
T ss_pred HHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHHhCCCEEEeeccccCC
Confidence 36789999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH--HHcCCeEEEEEee
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA--LTNGIRVRGYISC 158 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a--~~~Gi~v~~~l~~ 158 (327)
++||+++|+++.+|+..+.++++|.-.+. .+++. ++.+++.-+.. ...|....+
T Consensus 236 ------~agn~~~e~vv~~L~~~g~~~~idl~~l~-~~s~~-------------~~~~~~~y~~~~~~~~~~~~~v---- 291 (592)
T PRK09282 236 ------GTSQPPTESMVAALKGTPYDTGLDLELLF-EIAEY-------------FREVRKKYKQFESEFTIVDTRV---- 291 (592)
T ss_pred ------CcCCHhHHHHHHHHHhCCCCCccCHHHHH-HHHHH-------------HHHHHHHhhcCCCccccCCccE----
Confidence 99999999999999988888888876544 22221 22222111110 001121111
Q ss_pred eccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHH
Q psy12516 159 VVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILT 235 (327)
Q Consensus 159 ~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~ 235 (327)
+.+..+...+.++..++.+.|... .=.++.+.++.+++.++.+++..-+..- .-+|+-|.+.
T Consensus 292 -----~~~~~pGg~~snl~~q~~~~g~~d----------~~~~vl~e~~~v~~~lG~~~~VTP~Sq~vg~~A~~nv~~ 354 (592)
T PRK09282 292 -----LIHQVPGGMISNLVSQLKEQNALD----------KLDEVLEEIPRVREDLGYPPLVTPTSQIVGTQAVLNVLT 354 (592)
T ss_pred -----EEEcCCCcHHHHHHHHHHHCCcHH----------HHHHHHHHHHHHHHHcCCCCeECChhHhHHHHHHHHHHc
Confidence 234678899999999999998721 2346677788888888776666655543 3567777554
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.1e-23 Score=201.09 Aligned_cols=157 Identities=25% Similarity=0.458 Sum_probs=125.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|+|.|+|+||+|.++|.++.++++.+++..+ +++++|+|||+|||+||+++|+++|+++||+|++|+||
T Consensus 147 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE- 224 (488)
T PRK09389 147 ELYKAGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE- 224 (488)
T ss_pred HHHHHHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc-
Confidence 5778889999999999999999999999999999999876 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEEEe
Q psy12516 82 PYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGYIS 157 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~l~ 157 (327)
|+||+++|+++.+|+. .++++++|.-.+. .+++...+. .++.. ..-++++ .+++++|+|+.+.+.
T Consensus 225 -----RaGNa~lE~lv~~L~~~~g~~~~idl~~l~-~~s~~v~~~-~~~~v----~~~~pivG~~aF~h~sGiH~dgi~k 293 (488)
T PRK09389 225 -----RAGNASLEEVVMALKHLYDVETGIKLEELY-ELSRLVSRL-TGIPV----PPNKAIVGENAFAHESGIHVDGLLK 293 (488)
T ss_pred -----cccCccHHHHHHHHHhhcCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCcccHhHHHhcchhhHHHHhC
Confidence 9999999999999987 4888999877665 444443322 23222 2233444 478999999887766
Q ss_pred eeccCCCCCCCChHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~ 174 (327)
.. .+|+ .++|+.+.
T Consensus 294 ~~--~~Ye-~~~P~~vG 307 (488)
T PRK09389 294 DT--ETYE-PITPETVG 307 (488)
T ss_pred Cc--ccCC-CCCHHHcC
Confidence 53 2333 34554433
|
|
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.7e-23 Score=200.81 Aligned_cols=158 Identities=25% Similarity=0.472 Sum_probs=125.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++.+.++|+++|+|+||+|.++|+++.++++.+++.+|. +++++|+|||+||++||+++|+++|+++||+|++||
T Consensus 150 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~Gl 229 (494)
T TIGR00973 150 RIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGI 229 (494)
T ss_pred HHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecc
Confidence 67889999999999999999999999999999999999873 679999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhh----hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCe
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEG----KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIR 151 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~----~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~ 151 (327)
|| |+||+++|+++.+|.. .++++++|.-.+. .+++...+. .+... ..-++++ .+++++|+|
T Consensus 230 GE------RaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~-~~s~~v~~~-~g~~v----~~~~PivG~~aF~h~sGiH 297 (494)
T TIGR00973 230 GE------RAGNAALEEVVMALKVRKDFLGVETGINTKEIY-RTSRLVSQL-TGMPV----QPNKAIVGDNAFAHESGIH 297 (494)
T ss_pred cc------cccCccHHHHHHHHHHhcccCCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCcccHhHHHhccchh
Confidence 99 9999999999998874 3778888877655 444433222 23322 2234444 478999999
Q ss_pred EEEEEeeeccCCCCCCCChHHHH
Q psy12516 152 VRGYISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 152 v~~~l~~~~g~~~~~r~~~e~l~ 174 (327)
+.+.+... .+|+ .++|+.+.
T Consensus 298 ~dgi~k~~--~~Ye-~~~Pe~vG 317 (494)
T TIGR00973 298 QDGVLKNK--ETYE-IMSPEDIG 317 (494)
T ss_pred HHHHhCCc--cccc-CCCHHHcC
Confidence 88777653 2333 35555444
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.8e-23 Score=198.21 Aligned_cols=196 Identities=26% Similarity=0.406 Sum_probs=141.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+.++.+.++|+++|+++||+|.++|..++++++++++.+| ..++++|+|||+|||+||+++|+++|+++||+|++|+||
T Consensus 150 ~~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGE 229 (409)
T COG0119 150 EVVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGE 229 (409)
T ss_pred HHHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEeccccee
Confidence 5678888899999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhh---hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEE
Q psy12516 81 CPYARGASGNVATEDLVYMLEG---KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRG 154 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~---~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~ 154 (327)
|+||.++++++.++.- .+.++++|...+. .+|+...+. .++.++ ..++++ .+++++|+|+.+
T Consensus 230 ------RaGna~l~~v~~~l~~~~~~~~~~~idl~~l~-~~s~~v~~~-~~~~v~----~n~pivG~naFah~sGIH~dg 297 (409)
T COG0119 230 ------RAGNAALEEVVLALALRKDYGVDTGIDLEKLT-EASRLVERL-TGIPVP----PNKPIVGENAFAHESGIHQDG 297 (409)
T ss_pred ------ccccccHHHHHHHHHHHhhcCCccCCCHHHHH-HHHHHHHHH-hCCCCC----CCCCchhhHHHHhhcchhHHH
Confidence 9999999999866543 4568888887765 334433222 232221 223444 378999999987
Q ss_pred EEeeeccCCCCCCCChHHHHHHHHHHHH---cCcCEEE-ecCCCCc-cCHHHHHHHHHHHHHh
Q psy12516 155 YISCVVGCPYEGAVPPHNVTRVATALYK---MGCYEIS-LGDTIGV-GTPGTMRLMLEDVLTV 212 (327)
Q Consensus 155 ~l~~~~g~~~~~r~~~e~l~~~~~~~~~---~g~~~i~-l~Dt~G~-~~P~~~~~~~~~~~~~ 212 (327)
.+.... .|+ .++|+.+..-.+.+.. .|-..+. .-...|. ..|+++..++..+|+.
T Consensus 298 vlkn~~--tYE-~i~Pe~VG~~r~~vi~~~~sg~~~~~~~l~~~g~~~~~~~~~~~~~~vk~l 357 (409)
T COG0119 298 VLKNPE--TYE-PIDPEDVGRRRRIVIGGKHSGRKAVKAKLEELGIELDEEELDKLFSRVKEL 357 (409)
T ss_pred HhhCHh--hcC-CCCHHHcCCeeeeEeeccccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHH
Confidence 777643 122 5677766543332221 0110000 1122232 2377788888777764
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-22 Score=181.07 Aligned_cols=97 Identities=35% Similarity=0.534 Sum_probs=86.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||+|.++|.+++++++.+++.+|..+++||+|||+|++++|+++|+++|+++||+|+.|||+
T Consensus 141 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~- 219 (237)
T PF00682_consen 141 ELAEALAEAGADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGE- 219 (237)
T ss_dssp HHHHHHHHHT-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS-
T ss_pred HHHHHHHHcCCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCC-
Confidence 6788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKS 104 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~ 104 (327)
++||+++|+++..|+.++
T Consensus 220 -----~~Gn~~le~lv~~L~~~g 237 (237)
T PF00682_consen 220 -----RAGNAPLEELVAALERMG 237 (237)
T ss_dssp -----TTSB-BHHHHHHHHHHT-
T ss_pred -----CCCCccHHHHHHHHhhcC
Confidence 999999999999887653
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-22 Score=180.89 Aligned_cols=108 Identities=41% Similarity=0.607 Sum_probs=102.8
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|++.|+++||+|.++|.+++++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 150 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~- 228 (265)
T cd03174 150 EVAKALEEAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGE- 228 (265)
T ss_pred HHHHHHHHcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccc-
Confidence 5788999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+..+.++++|...+.
T Consensus 229 -----~~Gn~~~e~~~~~l~~~~~~~~~~~~~l~ 257 (265)
T cd03174 229 -----RAGNAATEDLVAALEGLGIDTGIDLEKLL 257 (265)
T ss_pred -----cccCccHHHHHHHHHhcCCCCCCCHHHHH
Confidence 99999999999999998888888876654
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.8e-22 Score=181.45 Aligned_cols=106 Identities=25% Similarity=0.351 Sum_probs=95.7
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+++|+|+||+|.++|.+++++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++||||
T Consensus 155 ~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~GlGe- 233 (273)
T cd07941 155 ATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTINGYGE- 233 (273)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEecccccc-
Confidence 5778889999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhh-hhhccc--Ccchhh
Q psy12516 82 PYARGASGNVATEDLVYMLE-GKSMQC--GVKEIA 113 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~-~~~~~~--Gid~i~ 113 (327)
++||+++|.++..|. +.+.+. ++|...
T Consensus 234 -----raGn~~~e~~~~~L~~~~~~~~~~~~~~~~ 263 (273)
T cd07941 234 -----RCGNANLCSIIPNLQLKMGYECLPEENLKK 263 (273)
T ss_pred -----ccccccHHHHHHHHHhccCCCCcCccCHHH
Confidence 999999999999886 334432 444443
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.7e-22 Score=199.32 Aligned_cols=158 Identities=22% Similarity=0.263 Sum_probs=124.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|+++|+|+||+|.++|.++.++++.+++.+|..++++|+|||+|||+||+++|+++|+++||+|++|+||
T Consensus 158 ~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~TinGiGE- 236 (526)
T TIGR00977 158 ATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTINGYGE- 236 (526)
T ss_pred HHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccC-
Confidence 6788899999999999999999999999999999999998666999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhh-hhcc--cCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEE
Q psy12516 82 PYARGASGNVATEDLVYMLEG-KSMQ--CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGY 155 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~-~~~~--~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~ 155 (327)
|+||+++|+++..|.. ++++ +++|.-.+. .+++...+. .+.. +...++++ .+++++|+|+.+.
T Consensus 237 -----RaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~-~~s~~v~~~-~~~~----v~~~~pivG~~aF~h~sGiH~dgi 305 (526)
T TIGR00977 237 -----RCGNANLCSLIPNLQLKLGYDVIPPENLKKLT-STARLVAEI-VNLP----PDDNMPYVGRSAFAHKGGVHVSAV 305 (526)
T ss_pred -----ccCCCcHHHHHHHHHhhcCCCCCCccCHHHHH-HHHHHHHHH-hCCC----CCCCCCccCcceeeeeccccHHHH
Confidence 9999999999988763 5555 467766554 344433222 2222 12233444 3689999998887
Q ss_pred EeeeccCCCCCCCChHHHH
Q psy12516 156 ISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 156 l~~~~g~~~~~r~~~e~l~ 174 (327)
+.... +|+ .++|+.+.
T Consensus 306 ~k~~~--~Ye-~~~Pe~vG 321 (526)
T TIGR00977 306 QRNPF--TYE-HIAPELVG 321 (526)
T ss_pred hCCcc--ccc-cCCHHHcC
Confidence 76642 333 36666554
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-21 Score=178.06 Aligned_cols=106 Identities=24% Similarity=0.384 Sum_probs=95.8
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+++|+|+||+|.++|++++++++.+++.+| +++++|+|||+||+++|+++|+++|+++||+|++|||+
T Consensus 145 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe- 222 (262)
T cd07948 145 RVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGE- 222 (262)
T ss_pred HHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc-
Confidence 5788999999999999999999999999999999999997 99999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhh---hcccCcchhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGK---SMQCGVKEIAV 114 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~---~~~~Gid~i~l 114 (327)
|+||+++|+++..|... ...+++|.-.+
T Consensus 223 -----raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l 253 (262)
T cd07948 223 -----RNGITPLGGLIARMYTADPEYVVSKYKLELL 253 (262)
T ss_pred -----ccCCccHHHHHHHHHhccccCCCCCcCHHHH
Confidence 99999999999988643 33344554443
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.87 E-value=1e-21 Score=179.48 Aligned_cols=107 Identities=25% Similarity=0.399 Sum_probs=96.6
Q ss_pred HHHHHHH----cCcC-EEEecCCccccCH-------HHHHHHHHHHHhh--cCCCeeEEEecCccchHHHHHHHHHHcCC
Q psy12516 3 VASALYK----MGCY-EISLGDTIGVGTP-------GTMRLMLEDVLTV--IPADRLAVHCHDTYGQALANILTAMEFGI 68 (327)
Q Consensus 3 ~~~~~~~----~g~~-~i~~~Dt~G~~~p-------~~~~~~~~~~~~~--~~~~~~~~H~h~~~g~~~~~~~~a~~aG~ 68 (327)
+++++.+ +|+| +|+|+||+|.++| .+++++++.+++. .|+.++++|+|||+|++++|+++|+++|+
T Consensus 150 ~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~aG~ 229 (279)
T cd07947 150 FVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWLYGA 229 (279)
T ss_pred HHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHHhCC
Confidence 4555555 8999 8999999999998 6799999999988 56678999999999999999999999999
Q ss_pred cEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhh-hcccCcchhhhh
Q psy12516 69 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGK-SMQCGVKEIAVF 115 (327)
Q Consensus 69 ~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~-~~~~Gid~i~l~ 115 (327)
++||+|++|||+ ++||+++|+++.+|..+ ++++++|.-.+.
T Consensus 230 ~~vd~sv~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~ 271 (279)
T cd07947 230 SWVNCTLLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVIT 271 (279)
T ss_pred CEEEEecccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHH
Confidence 999999999999 99999999999999887 899998876654
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-22 Score=196.50 Aligned_cols=157 Identities=24% Similarity=0.248 Sum_probs=123.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|+++|+|+||+|.++|.+++++++.+++.+ ++++++|+|||+|||+||+++|+++|+++||+|++||||
T Consensus 162 ~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa~~Vd~Tl~GlGE- 239 (524)
T PRK12344 162 ATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGARQVQGTINGYGE- 239 (524)
T ss_pred HHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc-
Confidence 567888999999999999999999999999999999988 589999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhh-hh--cccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEE
Q psy12516 82 PYARGASGNVATEDLVYMLEG-KS--MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGY 155 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~-~~--~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~ 155 (327)
|+||+++|+++..|.. .+ +++++|.-.+. .+++.+.+. .++. +...++++ .+++++|+|+.+.
T Consensus 240 -----RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~-~is~~v~~~-~~~~----v~~~~pivG~~~F~h~SGiH~dgi 308 (524)
T PRK12344 240 -----RCGNANLCSIIPNLQLKMGYECLPEEKLKELT-EVSRFVSEI-ANLA----PDPHQPYVGASAFAHKGGIHVSAV 308 (524)
T ss_pred -----cccCcCHHHHHHHHHhccCCCCCCCcCHHHHH-HHHHHHHHH-hCCC----CCCCCCeECcchhhhhccccHHHH
Confidence 9999999999988763 45 44678876655 444443332 1222 11223444 3789999999887
Q ss_pred EeeeccCCCCCCCChHHHH
Q psy12516 156 ISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 156 l~~~~g~~~~~r~~~e~l~ 174 (327)
+... .+|+ .++|+.+.
T Consensus 309 ~k~~--~~Ye-~~~P~~vG 324 (524)
T PRK12344 309 LKDP--RTYE-HIDPELVG 324 (524)
T ss_pred hCCc--cccc-CCCHHHhC
Confidence 7653 2333 45665544
|
|
| >KOG2368|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=5e-22 Score=169.85 Aligned_cols=116 Identities=67% Similarity=1.164 Sum_probs=110.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+.+|+|.||.|+.||-.++++++.+.+..|...+-.|+||++|.+++|++-+++.|+..+|+++.|||+|
T Consensus 173 ~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvDSsvaGLGGC 252 (316)
T KOG2368|consen 173 EVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVDSSVAGLGGC 252 (316)
T ss_pred HHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehhhhccccCCC
Confidence 57899999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFAS 117 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~ 117 (327)
||..+.+||..+||++.+|+.+++++|++...+...
T Consensus 253 PYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Kliea 288 (316)
T KOG2368|consen 253 PYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEA 288 (316)
T ss_pred CccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHH
Confidence 999999999999999999999999999998776643
|
|
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.86 E-value=5.2e-21 Score=176.25 Aligned_cols=212 Identities=22% Similarity=0.253 Sum_probs=163.5
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|.|+|+|++|.++|....++++.+++.++ +++.+|+|++.|++.++++.|+|+|++.||+++..+.+
T Consensus 159 v~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvEAGvD~iDTAisp~S~ 237 (472)
T COG5016 159 VELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVEAGVDGIDTAISPLSG 237 (472)
T ss_pred HHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHHhCcchhhhhhccccC
Confidence 47899999999999999999999999999999999999998 99999999999999999999999999999999999998
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC--C-eEEEEEe
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG--I-RVRGYIS 157 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G--i-~v~~~l~ 157 (327)
.++++++|.++.+|++...++|.|...+. .+.+++..++++- + .... .
T Consensus 238 ------gtsqP~tEtmv~aL~gt~yDtgld~~~l~---------------------~~~~yf~~vrkkY~~~~~~~~--~ 288 (472)
T COG5016 238 ------GTSQPATETMVAALRGTGYDTGLDLELLE---------------------EIAEYFREVRKKYKGLLEPQA--K 288 (472)
T ss_pred ------CCCCCcHHHHHHHhcCCCCCccccHHHHH---------------------HHHHHHHHHHHHHhhccCccc--c
Confidence 99999999999999999999999876432 2222222222221 1 1110 0
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC-cHHHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG-QALANILT 235 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g-~a~an~l~ 235 (327)
..-..--.++.+..++.++..|+.+.++ |. -+++-+-+.++++.++-.|+..-+..-.| .|+-|.+.
T Consensus 289 ~~d~~ili~qvPGGMlSNl~sQLkeqnaldK-----------~~eVLeEvprVredlGypPLVTPtSQiVGtQAvlNVl~ 357 (472)
T COG5016 289 GVDPRILIYQVPGGMLSNLESQLKEQNALDK-----------LEEVLEEVPRVREDLGYPPLVTPTSQIVGTQAVLNVLT 357 (472)
T ss_pred CCCCcceEeeCChHHHHHHHHHHHHcchhhH-----------HHHHHHHhHHHHhhcCCCCccCchhhhhhHHHHHHHHh
Confidence 0000001246899999999999999987 33 36788889999999877788877777554 67889888
Q ss_pred HHHhc--CceeeeccccCCC
Q psy12516 236 AMEFG--ISVFDSSIAGLGG 253 (327)
Q Consensus 236 a~~~G--~~~vd~s~~G~G~ 253 (327)
+-+.- .+.+---+.|+-+
T Consensus 358 GerYK~It~E~~~yv~G~YG 377 (472)
T COG5016 358 GERYKVITKETKDYVKGLYG 377 (472)
T ss_pred cchhhHHHHHHHHHhccccC
Confidence 73332 2233344556555
|
|
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.3e-21 Score=203.90 Aligned_cols=196 Identities=19% Similarity=0.249 Sum_probs=152.9
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.+ +++|++|+|||.|++++|+++|+++|+++||++++|||+
T Consensus 694 ~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~ 772 (1146)
T PRK12999 694 VDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSG 772 (1146)
T ss_pred HHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcC
Confidence 3678999999999999999999999999999999999998 499999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVV 160 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~ 160 (327)
++||+++|+++.+|+..+.++|+|...+. .+++. ++.+++.-.. -+.+..- ..
T Consensus 773 ------~tgn~~le~vv~~L~~~~~~t~idl~~l~-~~s~~-------------~~~~r~~y~~-~~~~~~~------~~ 825 (1146)
T PRK12999 773 ------LTSQPSLNSIVAALEGTERDTGLDLDAIR-KLSPY-------------WEAVRPYYAP-FESGLKS------PT 825 (1146)
T ss_pred ------CcCCHHHHHHHHHHHhcCCCCCcCHHHHH-HHHHH-------------HHHHHhHhhc-cCCCCCC------CC
Confidence 99999999999999999999999887654 22221 2222222211 1222210 00
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cCcHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YGQALANILT 235 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g~a~an~l~ 235 (327)
..-+.++.+...+.++..|+.+.|. |++ .++.+.+..+++.+++++...-+..- .-+|+-|...
T Consensus 826 ~~v~~~~~PGG~~snl~~q~~~~g~~~~~-----------~~v~~~~~~v~~~~G~~~~VTP~Sq~vg~~A~~~v~~ 891 (1146)
T PRK12999 826 TEVYLHEMPGGQYSNLKQQARALGLGDRF-----------EEVKEMYAAVNRMFGDIVKVTPSSKVVGDMALFMVQN 891 (1146)
T ss_pred cCeEEecCCCcccchHHHHHHHCChHhHH-----------HHHHHHHHHHHHHcCCCceeCccchhhHHHHHHHHhh
Confidence 0113457889999999999999875 332 47778889999988876666655553 3577777755
|
|
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.6e-21 Score=176.02 Aligned_cols=108 Identities=20% Similarity=0.227 Sum_probs=98.1
Q ss_pred HHHHHHHHc---CcC---EEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKM---GCY---EISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~---g~~---~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
++++.+.++ |++ +|+|+||+|.++|+++.++++.+++.+|. +++++|+|||+||+++|+++|+++|+++||
T Consensus 160 ~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id 239 (284)
T cd07942 160 EVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGADRVE 239 (284)
T ss_pred HHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCCCEEE
Confidence 566777776 544 99999999999999999999999998873 569999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
+|++|+|+ |+||.++|+++.+|..+++++|+|...+.
T Consensus 240 ~~~~g~Ge------RaGN~~~E~lv~~l~~~g~~t~id~~~l~ 276 (284)
T cd07942 240 GTLFGNGE------RTGNVDLVTLALNLYSQGVDPGLDFSDID 276 (284)
T ss_pred eeCccCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHH
Confidence 99999999 99999999999999888999998877654
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.2e-21 Score=192.87 Aligned_cols=145 Identities=17% Similarity=0.111 Sum_probs=119.9
Q ss_pred HHHHHHHHcCc------CEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKMGC------YEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~------~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
++++.+.++|+ ++|.|+||+|.++|..+.++++.+++.+|. +++++|+|||+|||+||+++|+++|+++||
T Consensus 188 ~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANslaAv~aGa~~v~ 267 (564)
T TIGR00970 188 EVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAELGFLAGADRIE 267 (564)
T ss_pred HHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 67888999987 499999999999999999999999998874 569999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcC
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNG 149 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~G 149 (327)
+|++|+|| |+||+++|+++.+|..+++++|+|.-.+. .+++...+ ..++.+ ...++++ .+++++|
T Consensus 268 gt~~G~GE------RaGNa~le~lv~~L~~~g~~t~idl~~L~-~~s~~v~~-~~~~~i----~~~~PivG~~aF~h~SG 335 (564)
T TIGR00970 268 GCLFGNGE------RTGNVDLVTLALNLYTQGVSPNLDFSNLD-EIRRTVEY-CNKIPV----HERHPYGGDLVYTAFSG 335 (564)
T ss_pred eecCcCCc------cccCccHHHHHHHHHhcCCCCCcCHHHHH-HHHHHHHH-HhCCCC----CCCCCchhhhHhhhccc
Confidence 99999999 99999999999999988999999887765 34443222 223322 2234444 3789999
Q ss_pred CeEEEEEee
Q psy12516 150 IRVRGYISC 158 (327)
Q Consensus 150 i~v~~~l~~ 158 (327)
+|+.+.+..
T Consensus 336 iH~dai~K~ 344 (564)
T TIGR00970 336 SHQDAINKG 344 (564)
T ss_pred hhHHHHhcC
Confidence 998776665
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.3e-21 Score=191.13 Aligned_cols=145 Identities=16% Similarity=0.124 Sum_probs=118.0
Q ss_pred HHHHHHHH---cCcC---EEEecCCccccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYK---MGCY---EISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~---~g~~---~i~~~Dt~G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
++++.+.+ +|++ .|.|+||+|.++|..+.++++.+++.+| .+++++|+|||+|||+||+++|+++|+++||
T Consensus 189 ~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaAv~aGa~~v~ 268 (552)
T PRK03739 189 EVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELALMAGADRVE 268 (552)
T ss_pred HHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHHHHhCCCEEE
Confidence 45666665 5655 5999999999999999999999999887 5889999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcC
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNG 149 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~G 149 (327)
+|++|+|| |+||.++|+++..|..+++++|+|.-.+. .+++...+. .++.. ...++++ .+++++|
T Consensus 269 gtvnG~GE------RaGNa~le~vv~~L~~~g~~t~idl~~L~-~~s~~v~~~-~~~~i----~~~~PivG~~aF~hesG 336 (552)
T PRK03739 269 GCLFGNGE------RTGNVDLVTLALNLYTQGVDPGLDFSDID-EIRRTVEYC-NQLPV----HPRHPYAGDLVFTAFSG 336 (552)
T ss_pred eeCCcCcc------cccChhHHHHHHHHHhcCCCCCcCHHHHH-HHHHHHHHH-hCCCC----CCCCCccchhhhhhccc
Confidence 99999999 99999999999999888899999877765 444433221 23222 2234454 3789999
Q ss_pred CeEEEEEee
Q psy12516 150 IRVRGYISC 158 (327)
Q Consensus 150 i~v~~~l~~ 158 (327)
+|+.+.+..
T Consensus 337 iH~dgilk~ 345 (552)
T PRK03739 337 SHQDAIKKG 345 (552)
T ss_pred hhHHHHhcC
Confidence 998876655
|
|
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.1e-20 Score=172.86 Aligned_cols=97 Identities=24% Similarity=0.236 Sum_probs=90.2
Q ss_pred CcCEEEecCCccccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCc
Q psy12516 11 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGA 87 (327)
Q Consensus 11 g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~ 87 (327)
|+++|+|+||+|.++|+.+.++++.+++..+ .+++++|+|||+|++++|+++|+++|+++||+|++|+|| |
T Consensus 206 ~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~GlA~ANslaA~~aGa~~i~~tv~G~GE------R 279 (333)
T PRK14847 206 RKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGTAVAAAELAVLAGAERIEGCLFGNGE------R 279 (333)
T ss_pred CCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCchHHHHHHHHHHhCCCEEEeeCCcCCc------c
Confidence 4778999999999999999999999998875 589999999999999999999999999999999999999 9
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhh
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIA 113 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~ 113 (327)
+||.++|+++.+|...++++++|...
T Consensus 280 aGNa~lE~v~~~L~~~g~~~~id~~~ 305 (333)
T PRK14847 280 TGNVDLVALALNLERQGIASGLDFRD 305 (333)
T ss_pred ccchhHHHHHHHHHhcCCCCCcCHHH
Confidence 99999999999998888888877654
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-20 Score=194.35 Aligned_cols=195 Identities=18% Similarity=0.239 Sum_probs=148.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.+ ++++++|+|||+|++++|+++|+++|+++||++++|||+
T Consensus 693 ~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ai~gl~G- 770 (1143)
T TIGR01235 693 NLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDVAVDSMSG- 770 (1143)
T ss_pred HHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEecchhhcC-
Confidence 688999999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
.++++++|+++.+|...+.++|+|...+. .+++. ++.+++.-.. -+.+.. ....
T Consensus 771 -----~ts~p~~e~~v~~L~~~~~~tgidl~~l~-~is~~-------------~~~vr~~y~~-~~~~~~------~~~~ 824 (1143)
T TIGR01235 771 -----LTSQPSLGAIVAALEGSERDPGLNVAWIR-ELSAY-------------WEAVRNLYAA-FESDLK------GPAS 824 (1143)
T ss_pred -----CCCCHhHHHHHHHHHhCCCCCCcCHHHHH-HHHHH-------------HHHHHHHhhc-CCCCCc------CCCc
Confidence 77888999999999998999999877654 22221 2222222111 012221 0000
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCc-CcHHHHHHH
Q psy12516 162 CPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTY-GQALANILT 235 (327)
Q Consensus 162 ~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~-g~a~an~l~ 235 (327)
.-+.++.+...+.++..|+.+.|. |++ .++.+.+..+++.+++++...-+..-. -+|+-|...
T Consensus 825 ~v~~~~~PGG~~snl~~q~~~~g~~~~~-----------~~v~~~~~~v~~~lG~~~~VTP~Sq~vg~~A~~~v~~ 889 (1143)
T TIGR01235 825 EVYLHEMPGGQYTNLQFQARSLGLGDRW-----------HEVKQAYREANQMFGDIVKVTPSSKVVGDMALFMVSN 889 (1143)
T ss_pred CeEEecCCCcccchHHHHHHHCCcHhhH-----------HHHHHHHHHHHHHcCCCceECChhHhHHHHHHHHHHh
Confidence 113457888999999999999986 332 467888889998888766665555433 355544433
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >KOG2367|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-16 Score=149.12 Aligned_cols=98 Identities=27% Similarity=0.476 Sum_probs=92.5
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
+|+.+...++|+.++.|+||+|+.+|.+..++++.++.+.|+ +.|..|+|||+|+++||+..++++|+++||+++.|
T Consensus 207 ~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE~~i~G 286 (560)
T KOG2367|consen 207 LEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVEVTING 286 (560)
T ss_pred HHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEEEEeec
Confidence 467888999999999999999999999999999999999986 67999999999999999999999999999999999
Q ss_pred CCCCCCCCCccCCCcHHHHHHHhhhhh
Q psy12516 78 LGGCPYARGASGNVATEDLVYMLEGKS 104 (327)
Q Consensus 78 lg~~p~~~~~~gn~~~e~v~~~l~~~~ 104 (327)
+|| |+||.+++++++.|+-++
T Consensus 287 iGE------RtGn~~L~~v~m~my~~g 307 (560)
T KOG2367|consen 287 IGE------RTGNAPLEEVVMAMYCRG 307 (560)
T ss_pred ccc------ccCCCCHHHHHHHheecC
Confidence 999 999999999999887655
|
|
| >COG1038 PycA Pyruvate carboxylase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.7e-14 Score=138.44 Aligned_cols=173 Identities=20% Similarity=0.318 Sum_probs=132.3
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|++++.++|++|++.|...+.|++++++.+ ++||++|+||+.|.+++.+.+|+++|++.+|+++..|.+
T Consensus 697 ~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~~aA~~AGvDivD~A~~smsG 775 (1149)
T COG1038 697 VKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVATYLAAVEAGVDIVDVAMASMSG 775 (1149)
T ss_pred HHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCCCccHHHHHHHHHHcCCchhhhhhhhccC
Confidence 3689999999999999999999999999999999999998 699999999999999999999999999999999999998
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe---EEEEEe
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR---VRGYIS 157 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~---v~~~l~ 157 (327)
-+.++++..++.+|...-.++|+|...+- ..|. .|+.++.+-. .=++|++ .++
T Consensus 776 ------~TSQPsl~si~~al~~~~r~~~ld~~~~~-~i~~-------------YWe~vR~~Ya-~FEs~lkgp~~eV--- 831 (1149)
T COG1038 776 ------LTSQPSLNSIVAALAGTERDTGLDIEAVR-ELSF-------------YWEAVRKLYA-PFESGLKGPATEV--- 831 (1149)
T ss_pred ------CCCCccHHHHHHHhcCCCCCCCCCHHHHH-HHHH-------------HHHHHHHhhh-hhhcCCCCCCcce---
Confidence 88999999999999887788887764322 1111 2333333222 1244443 222
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCC
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~ 215 (327)
|.+..+...+.++.+|+.+.|. +++ +++.+.++.+...+.+
T Consensus 832 ------Y~HEmPGGQ~tNLk~QA~slGLg~Rw-----------~evk~~Y~~vN~mfGd 873 (1149)
T COG1038 832 ------YLHEMPGGQLTNLKQQARSLGLGDRW-----------EEVKEAYREVNRMFGD 873 (1149)
T ss_pred ------eeeecCCcccccHHHHHHhccchhhH-----------HHHHHHHHHHHHHhCC
Confidence 2345677788899999987664 221 4566666666555555
|
|
| >TIGR02146 LysS_fung_arch homocitrate synthase | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.8e-13 Score=128.20 Aligned_cols=94 Identities=23% Similarity=0.453 Sum_probs=86.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.++|++.++++||.|.++|.++..++..+++..|.+++++|+||+.|++++|++.|+++|+.++|+++.|||+
T Consensus 143 ~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~- 221 (344)
T TIGR02146 143 SIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGE- 221 (344)
T ss_pred HHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeC-
Confidence 5677888899999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhh
Q psy12516 82 PYARGASGNVATEDLVYMLE 101 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~ 101 (327)
+.||.+++.++..+.
T Consensus 222 -----~~G~~~l~~~~~~L~ 236 (344)
T TIGR02146 222 -----RNGITPLGGILARLY 236 (344)
T ss_pred -----CCCCccHHHHHHHHH
Confidence 668988877765543
|
This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. |
| >KOG0369|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=9.6e-12 Score=121.25 Aligned_cols=109 Identities=26% Similarity=0.410 Sum_probs=99.3
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|.+.++|+|++|.+.|...+.++..++..+|++||++|+|++.|.+++..+++.++|++++|+++.-|.+
T Consensus 721 ~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVAsMlaca~AGADVVDvA~dSMSG 800 (1176)
T KOG0369|consen 721 LNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVASMLACALAGADVVDVAVDSMSG 800 (1176)
T ss_pred HHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccCCccHHHHHHHHHHHcCCceeeeecccccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999988887
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
-+.+++.-.++..+.+.-.++|++.-++.
T Consensus 801 ------mTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~ 829 (1176)
T KOG0369|consen 801 ------MTSQPSMGALVASLQGTPLDTGLNLEHVR 829 (1176)
T ss_pred ------cccCCchhhhhhhccCCcccCCCchHHHH
Confidence 77788888888888777788888766543
|
|
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00076 Score=63.97 Aligned_cols=225 Identities=15% Similarity=0.122 Sum_probs=130.1
Q ss_pred HHHHHHHHcCcCEEEecCC-ccccCHHHHHHHHHHHHhhcCCCeeEEEe---------cCccchHHHHHHHHH-HcCCcE
Q psy12516 2 KVASALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLTVIPADRLAVHC---------HDTYGQALANILTAM-EFGISV 70 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt-~G~~~p~~~~~~~~~~~~~~~~~~~~~H~---------h~~~g~~~~~~~~a~-~aG~~~ 70 (327)
+.++.+.+.|++.|.|.+- .-...+..+.++++.+++..|++. +|+ +.+.|+-....+..| ++|++.
T Consensus 77 e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~--~~~~t~~ei~~~~~~~g~~~~e~l~~LkeAGl~~ 154 (343)
T TIGR03551 77 ERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMH--IHAFSPMEVYYGARNSGLSVEEALKRLKEAGLDS 154 (343)
T ss_pred HHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCce--EEecCHHHHHHHHHHcCCCHHHHHHHHHHhCccc
Confidence 5577788889999999832 113456667888888888776433 332 334444444444444 345544
Q ss_pred EEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHH-HHHHhhcC-ChHHHHHHHHHHHHHHHHc
Q psy12516 71 FDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEM-FSKRNINC-TIEESLERFSEVVSTALTN 148 (327)
Q Consensus 71 id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~-~~~~~l~~-s~ee~i~~~~~~v~~a~~~ 148 (327)
+- +.+. ...++. ..+..-+. + .++..+.++.+++.
T Consensus 155 i~----~~~~-----------------------------------E~~~~~v~~~i~~~~~~----~~~~~~~i~~a~~~ 191 (343)
T TIGR03551 155 MP----GTAA-----------------------------------EILDDEVRKVICPDKLS----TAEWIEIIKTAHKL 191 (343)
T ss_pred cc----Ccch-----------------------------------hhcCHHHHHhcCCCCCC----HHHHHHHHHHHHHc
Confidence 42 0010 000010 00111001 2 34456789999999
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEec----CCC--------CccCHHHHHHHHHHHH
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISLG----DTI--------GVGTPGTMRLMLEDVL 210 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l~----Dt~--------G~~~P~~~~~~~~~~~ 210 (327)
|+++...+. +|.+ -+.++..+....+.+++.+. |-+. .|- ..++|.+..++++..|
T Consensus 192 Gi~v~s~~i--~G~~----Et~ed~~~~l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~R 265 (343)
T TIGR03551 192 GIPTTATIM--YGHV----ETPEHWVDHLLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIAR 265 (343)
T ss_pred CCcccceEE--EecC----CCHHHHHHHHHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHH
Confidence 999876554 3433 35577777777777776552 2222 221 2357889999999888
Q ss_pred HhcCCC--eEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCCC
Q psy12516 211 TVIPAD--RLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGMGIET 280 (327)
Q Consensus 211 ~~~~~~--~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~g~~~ 280 (327)
=.+|+. .|..-. ...|. .....++.+||+-+++|+..-=--|.+....+ -.++++++.+.+..|+.+
T Consensus 266 l~lp~~~~~i~a~~-~~l~~--~~~~~~l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~~ 335 (343)
T TIGR03551 266 ILLHGLIDNIQASW-VKLGK--KLAQVALRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRIP 335 (343)
T ss_pred HhCCCcccCeeccc-cccCH--HHHHHHHhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCCe
Confidence 777864 344433 23333 33478899999999988753111012211222 247899999999888764
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0026 Score=60.58 Aligned_cols=137 Identities=17% Similarity=0.114 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEe----cCCC------CccC
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISL----GDTI------GVGT 198 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l----~Dt~------G~~~ 198 (327)
.++..++++.+++.|+++...++. |- --++++..+....+.+.+.+. |-+ .+|- ...+
T Consensus 187 ~~~~l~~i~~a~~~Gi~~~sg~i~--Gl----gEt~edrv~~l~~Lr~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~ 260 (351)
T TIGR03700 187 AERWLEIHRTAHELGLKTNATMLY--GH----IETPAHRVDHMLRLRELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPT 260 (351)
T ss_pred HHHHHHHHHHHHHcCCCcceEEEe--eC----CCCHHHHHHHHHHHHHhhHhhCCceEEEeecccCCCCcccCCCCCCCC
Confidence 455677899999999998776554 31 135677777777777776542 333 2442 3478
Q ss_pred HHHHHHHHHHHHHhcCCCe-EEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhC
Q psy12516 199 PGTMRLMLEDVLTVIPADR-LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGM 276 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~-l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~ 276 (327)
|.+..++++..|-.+|+++ |..-. ...|. .....++.+||+-+.+|+..----|.+....+ .++.+++...+++.
T Consensus 261 ~~e~lr~iA~~Rl~l~~i~~i~a~w-~~~~~--~~~~~~L~~Gand~ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~ 337 (351)
T TIGR03700 261 GLDDLKTLAVSRLYLDNIPHIKAYW-VMLGL--KLAQVALAFGVNDLDGTVVEEKIGHDAGAKSPQALSKDELVRLIRDA 337 (351)
T ss_pred HHHHHHHHHHHHHhcCCCCcccccc-cccCH--HHHHHHHhcCCCCCCccCccceeeccccCCCCCCCCHHHHHHHHHHc
Confidence 8899998888887676521 11100 11133 45688999999999888753221121111222 46889999999988
Q ss_pred CCCC
Q psy12516 277 GIET 280 (327)
Q Consensus 277 g~~~ 280 (327)
|+..
T Consensus 338 g~~p 341 (351)
T TIGR03700 338 GRVP 341 (351)
T ss_pred CCCe
Confidence 8754
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0015 Score=57.96 Aligned_cols=177 Identities=18% Similarity=0.189 Sum_probs=112.7
Q ss_pred HHHHHHHHcCcCEEEecCCc----cccCHHHHHHHHHHHHhhcCCCeeEE---EecCccchHHHHHHHHHHcCCcEEEec
Q psy12516 2 KVASALYKMGCYEISLGDTI----GVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSS 74 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~----G~~~p~~~~~~~~~~~~~~~~~~~~~---H~h~~~g~~~~~~~~a~~aG~~~id~~ 74 (327)
+-+..+.+.|+|.|-++|.. |-..||.++++++.+....| +.. -.....|.....++.+...|+++|.++
T Consensus 11 eEA~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~~p---vSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvG 87 (238)
T PRK02227 11 EEALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGRKP---VSATIGDVPYKPGTISLAALGAAATGADYVKVG 87 (238)
T ss_pred HHHHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCCCC---ceeeccCCCCCchHHHHHHHHHHhhCCCEEEEc
Confidence 45677889999999999998 99999999998888876544 222 223344666666777778999999999
Q ss_pred ccCCCCCC--------------------------C-CCCccCCCcHHHHHHHhhhhh-----cccC-cchhhhhhhhhHH
Q psy12516 75 IAGLGGCP--------------------------Y-ARGASGNVATEDLVYMLEGKS-----MQCG-VKEIAVFASASEM 121 (327)
Q Consensus 75 ~~glg~~p--------------------------~-~~~~~gn~~~e~v~~~l~~~~-----~~~G-id~i~l~~~~sd~ 121 (327)
+.+....+ | +..+.+.+++.++.....+.+ ++|. .|.-.+|...+
T Consensus 88 l~~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa~Kdg~~Lfd~l~-- 165 (238)
T PRK02227 88 LYGGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTAIKDGKSLFDHMD-- 165 (238)
T ss_pred CCCCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecccCCCcchHhhCC--
Confidence 87554311 0 112334455666655443322 2222 22333444333
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE------EecC-CC
Q psy12516 122 FSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI------SLGD-TI 194 (327)
Q Consensus 122 ~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i------~l~D-t~ 194 (327)
.+.+.+.++.+++.|+.+.. ++....+++- .+..+++|.+ |-.+ -.
T Consensus 166 -------------~~~L~~Fv~~ar~~Gl~~gL----------AGSL~~~dip----~L~~l~pD~lGfRgavC~g~dR~ 218 (238)
T PRK02227 166 -------------EEELAEFVAEARSHGLMSAL----------AGSLKFEDIP----ALKRLGPDILGVRGAVCGGGDRT 218 (238)
T ss_pred -------------HHHHHHHHHHHHHcccHhHh----------cccCchhhHH----HHHhcCCCEEEechhccCCCCcc
Confidence 56788889999999987531 2223334433 4566777743 3333 77
Q ss_pred CccCHHHHHHHHHHHH
Q psy12516 195 GVGTPGTMRLMLEDVL 210 (327)
Q Consensus 195 G~~~P~~~~~~~~~~~ 210 (327)
+.+.|+.+.++.+.+.
T Consensus 219 ~~id~~~V~~~~~~l~ 234 (238)
T PRK02227 219 GRIDPELVAELREALR 234 (238)
T ss_pred cccCHHHHHHHHHHhh
Confidence 8899998888766654
|
|
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0048 Score=57.63 Aligned_cols=136 Identities=16% Similarity=0.140 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EE----ecCCC-------CccC
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------IS----LGDTI-------GVGT 198 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~----l~Dt~-------G~~~ 198 (327)
++..++++.+++.|+++...++ +|-+ -+.++..+....+.+.+.+. |= -.+|- ...+
T Consensus 145 ~~~l~~i~~a~~~Gi~~~s~~i--iG~~----Et~ed~~~~l~~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~ 218 (309)
T TIGR00423 145 DEWLEVIKTAHRLGIPTTATMM--FGHV----ENPEHRVEHLLRIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGAS 218 (309)
T ss_pred HHHHHHHHHHHHcCCCceeeEE--ecCC----CCHHHHHHHHHHHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCC
Confidence 3456789999999999876654 4433 36777888888888877652 11 12442 2367
Q ss_pred HHHHHHHHHHHHHhcCCCe-EEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhC
Q psy12516 199 PGTMRLMLEDVLTVIPADR-LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGM 276 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~-l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~ 276 (327)
|.+..++++..|-.+|.++ +..-. +.+|-- ....++.+||+-+++|+..-=--|.|....+ -.+.+++...+++.
T Consensus 219 ~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~--~~~~~l~~Gand~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~ 295 (309)
T TIGR00423 219 GIDDLKVIAISRILLNNIRNIQASW-VKLGLK--LAQVALEFGANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDA 295 (309)
T ss_pred HHHHHHHHHHHHHhcCCCccceecc-hhcCHH--HHHHHHhCCCccCCcccccceeccccCCCCCCCCCHHHHHHHHHHc
Confidence 8888888888887777533 44322 344432 2478899999999988742211122222223 46789999999887
Q ss_pred CCCC
Q psy12516 277 GIET 280 (327)
Q Consensus 277 g~~~ 280 (327)
|+..
T Consensus 296 g~~~ 299 (309)
T TIGR00423 296 GRVP 299 (309)
T ss_pred CCCe
Confidence 7653
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0068 Score=57.36 Aligned_cols=133 Identities=17% Similarity=0.160 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEe----cCCC----CccCHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISL----GDTI----GVGTPG 200 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l----~Dt~----G~~~P~ 200 (327)
.+...++++.+++.|+++...+.. | . --+++...+....+.+.+.+. |-+ .+|- ...+|.
T Consensus 180 ~~~~l~~i~~a~~~Gi~v~~~~ii--G-l---gEt~ed~~~~l~~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~ 253 (340)
T TIGR03699 180 SEEWLEVMETAHKLGLPTTATMMF--G-H---VETLEDRIEHLERIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATST 253 (340)
T ss_pred HHHHHHHHHHHHHcCCCccceeEe--e-C---CCCHHHHHHHHHHHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHH
Confidence 344578899999999998755443 3 1 245677888888888887654 221 2331 246788
Q ss_pred HHHHHHHHHHHhcCCC-eEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCcc---HHHHHHHHHhC
Q psy12516 201 TMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVA---TEDLVYMLEGM 276 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~-~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~---~e~~~~~l~~~ 276 (327)
+..+.++..|-.+|+. .+..-. .. ++......++.+||+-+++++..=.--+ .+|..+ +++++.++++.
T Consensus 254 e~l~~iA~~Rl~lp~~~~i~~~~-~~--~g~~~~~~~l~~Gan~~~g~~~~~~~~~----~~g~~~~~~~~~~~~~i~~~ 326 (340)
T TIGR03699 254 EYLKVLAISRIFLDNIPNIQASW-VT--QGKEVGQLALHFGANDFGSTMLEENVVA----AAGATHRASREEIIRIIREA 326 (340)
T ss_pred HHHHHHHHHHHcCCCCCcccCCc-cc--cChHHHHHHHhcCCccCCCccccccccc----cCCCCCCCCHHHHHHHHHHc
Confidence 9999999888878862 122211 12 2333457789999999888876311101 234333 79999999988
Q ss_pred CCCC
Q psy12516 277 GIET 280 (327)
Q Consensus 277 g~~~ 280 (327)
|+..
T Consensus 327 g~~~ 330 (340)
T TIGR03699 327 GFIP 330 (340)
T ss_pred CCCe
Confidence 8764
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.014 Score=55.58 Aligned_cols=227 Identities=17% Similarity=0.176 Sum_probs=129.1
Q ss_pred HHHHHHHHcCcCEEEecCCc--cccCHHHHHHHHHHHHhhcCCCeeEE-EecC------ccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAV-HCHD------TYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~--G~~~p~~~~~~~~~~~~~~~~~~~~~-H~h~------~~g~~~~~~~~a~-~aG~~~i 71 (327)
+.++++.+.|++++.|. +. .......+.++++.+++.+|++.++. -.-+ ..|+.+...+..| ++|.+.+
T Consensus 87 ~~a~~a~~~G~~ei~iv-~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~LkeAGl~~~ 165 (353)
T PRK08444 87 EIVKNSVKRGIKEVHIV-SAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDMLEYGVDSM 165 (353)
T ss_pred HHHHHHHHCCCCEEEEe-ccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHHHHhCcccC
Confidence 56777888999999998 33 12233567788888888887432221 0011 3444443444444 3444433
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHH-HHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMF-SKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~-~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
. | |+ .|. .++.+ .+..-.+. ..++..++++.|++.|+
T Consensus 166 ~----g-~~------------aEi----------------------~~~~vr~~I~p~k~---~~~~~~~i~~~a~~~Gi 203 (353)
T PRK08444 166 P----G-GG------------AEI----------------------FDEEVRKKICKGKV---SSERWLEIHKYWHKKGK 203 (353)
T ss_pred C----C-CC------------chh----------------------cCHHHHhhhCCCCC---CHHHHHHHHHHHHHcCC
Confidence 2 1 10 000 01100 11111111 13566778889999999
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEe----cCC----CCccCHHHHHHHHHHHHHhcCCC
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISL----GDT----IGVGTPGTMRLMLEDVLTVIPAD 216 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l----~Dt----~G~~~P~~~~~~~~~~~~~~~~~ 216 (327)
++.....+ |- -=++++..+....+.++..+. |-+ ..| ....+|.+..+.++..|-.+|++
T Consensus 204 ~~~sg~l~--G~----gEt~edrv~hl~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i 277 (353)
T PRK08444 204 MSNATMLF--GH----IENREHRIDHMLRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI 277 (353)
T ss_pred CccceeEE--ec----CCCHHHHHHHHHHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 98766554 32 235667777777777765542 223 344 12477888888888877666653
Q ss_pred eEEEeecCC-cCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCCC
Q psy12516 217 RLAVHCHDT-YGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGMGIET 280 (327)
Q Consensus 217 ~l~~H~Hn~-~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~g~~~ 280 (327)
-|.... .-++...+..|+.+||+-+++|+..-=--|.|...++ ..+.+++...+++.|+..
T Consensus 278 ---~ni~a~w~~~g~~~~q~~L~~Ga~D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~p 340 (353)
T PRK08444 278 ---PHIKAYWATLTLNLALVAQEFGANDLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFIP 340 (353)
T ss_pred ---CccccccccCcHHHHHHHHhcCCccCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCCe
Confidence 122221 1245678889999999999999753211122222233 568899999999877653
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.012 Score=55.42 Aligned_cols=113 Identities=17% Similarity=0.283 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC-------CC-----------CCCChHHHHHHHHHHHHcCcCEE--Ee
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCP-------YE-----------GAVPPHNVTRVATALYKMGCYEI--SL 190 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~-------~~-----------~r~~~e~l~~~~~~~~~~g~~~i--~l 190 (327)
.+|+++..++++++|+..|+.|++-|...-+.+ +. ..++|++..+++ .+.|+|.+ .+
T Consensus 118 ~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv---~~TgvD~LAvai 194 (347)
T PRK09196 118 YEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFV---KKTQVDALAIAI 194 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHH---HHhCcCeEhhhh
Confidence 455688899999999999999998886643222 11 135666655544 45688854 44
Q ss_pred cCCCCccC----HH---HHHHHHHHHHHhcCCCeEEEeecCCc-------------------CcHHHHHHHHHHhcCcee
Q psy12516 191 GDTIGVGT----PG---TMRLMLEDVLTVIPADRLAVHCHDTY-------------------GQALANILTAMEFGISVF 244 (327)
Q Consensus 191 ~Dt~G~~~----P~---~~~~~~~~~~~~~~~~~l~~H~Hn~~-------------------g~a~an~l~a~~~G~~~v 244 (327)
.-..|.-. |. ==.++++.+++.++++||.+|.=... |..-.....|++.|+..|
T Consensus 195 GT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~~~e~i~~ai~~GI~KI 274 (347)
T PRK09196 195 GTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDIINEYGGDMPETYGVPVEEIQEGIKHGVRKV 274 (347)
T ss_pred ccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCceE
Confidence 44566542 42 11235677888887789999986644 667889999999999886
Q ss_pred ee
Q psy12516 245 DS 246 (327)
Q Consensus 245 d~ 246 (327)
..
T Consensus 275 Ni 276 (347)
T PRK09196 275 NI 276 (347)
T ss_pred Ee
Confidence 53
|
|
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.029 Score=51.85 Aligned_cols=130 Identities=11% Similarity=0.049 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe------cCC----CCccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL------GDT----IGVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l------~Dt----~G~~~P~~~~~ 204 (327)
++...+.++.+++.|+++...+. +|. . -+.+++.+.++.+.+.+++.+.+ +.| ....++++..+
T Consensus 157 ~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~---et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~~~s~~~~~~ 230 (296)
T TIGR00433 157 YDDRVDTLENAKKAGLKVCSGGI--FGL-G---ETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNKELSADDALK 230 (296)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE--EeC-C---CCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCCCCCHHHHHH
Confidence 55667788889999999876544 342 2 35678888889999999885532 233 12345578888
Q ss_pred HHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 205 MLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
++...|..+|...|.+=+=-..-+.-.-..-++.+|++.+-+ .++=- ..|+.+.++=+.++++.|+
T Consensus 231 ~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~--g~~~~------~~g~~~~~~~~~~~~~~~~ 296 (296)
T TIGR00433 231 TIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFV--GDYLT------TTGNPEEDKDKKLLAKLGL 296 (296)
T ss_pred HHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEE--cCccc------CCCCCCcHHHHHHHHHcCC
Confidence 899999888875452211111112211122378999987653 22222 4588888555667776653
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.016 Score=55.56 Aligned_cols=134 Identities=16% Similarity=0.171 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE------EEe---------cCCCCc---cC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE------ISL---------GDTIGV---GT 198 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~------i~l---------~Dt~G~---~~ 198 (327)
...++++.+++.|+++...+.. |- --+.++..+....+.+.+++. |-+ .+.... .+
T Consensus 202 ~~l~~i~~a~~~Gl~~~sg~i~--G~----gEt~edrv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~ 275 (371)
T PRK07360 202 EWIEIVKTAHKLGLPTTSTMMY--GH----VETPEHRIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAP 275 (371)
T ss_pred HHHHHHHHHHHcCCCceeeEEe--eC----CCCHHHHHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCC
Confidence 3467899999999998765443 21 136677888888888877654 322 222211 36
Q ss_pred HHHHHHHHHHHHHhcCC--CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC-CCC-CccHHHHHHHHH
Q psy12516 199 PGTMRLMLEDVLTVIPA--DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG-ASG-NVATEDLVYMLE 274 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~--~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g-~~G-n~~~e~~~~~l~ 274 (327)
|.+..+.++..|=.+|+ +.|-.-. ...| ......++.+||+-+.+++.+-=--+ +.| ... ..+++++...++
T Consensus 276 ~~~~lr~iAi~Rl~lp~~~~~i~a~~-~~lg--~~~~~~~l~~Gan~~~~~~~~~~v~~-~~G~~~~~~~~~~~~~~~i~ 351 (371)
T PRK07360 276 GLEDLLLYAVSRIFLGNWIKNIQASW-VKLG--LKLAQVALNCGANDLGGTLMEEHITK-MAGASGGTYMSVEELQWMIK 351 (371)
T ss_pred HHHHHHHHHHHHHhcCCCCCCeeccc-eeeC--HHHHHHHHhcCCccCcCcCcccceec-ccCCCCCCCCCHHHHHHHHH
Confidence 77888888888877787 2333322 2333 23356689999999988876411101 011 111 258899999999
Q ss_pred hCCCCC
Q psy12516 275 GMGIET 280 (327)
Q Consensus 275 ~~g~~~ 280 (327)
+.|+..
T Consensus 352 ~~G~~~ 357 (371)
T PRK07360 352 SIGRIP 357 (371)
T ss_pred HcCCce
Confidence 888764
|
|
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.032 Score=52.64 Aligned_cols=113 Identities=18% Similarity=0.334 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC-------CC-----------CCCChHHHHHHHHHHHHcCcCE--EEe
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCP-------YE-----------GAVPPHNVTRVATALYKMGCYE--ISL 190 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~-------~~-----------~r~~~e~l~~~~~~~~~~g~~~--i~l 190 (327)
.+|+++..++++++|+..|+.|++-|...-+.+ +. ..++|++..++++ +.|+|. +.+
T Consensus 118 ~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAvai 194 (347)
T PRK13399 118 YDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQ---RTGVDALAIAI 194 (347)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHH---HHCcCEEhhhh
Confidence 355688899999999999999998886532222 11 1456766665554 468885 444
Q ss_pred cCCCCccC----HH---HHHHHHHHHHHhcCCCeEEEeecCC-------------------cCcHHHHHHHHHHhcCcee
Q psy12516 191 GDTIGVGT----PG---TMRLMLEDVLTVIPADRLAVHCHDT-------------------YGQALANILTAMEFGISVF 244 (327)
Q Consensus 191 ~Dt~G~~~----P~---~~~~~~~~~~~~~~~~~l~~H~Hn~-------------------~g~a~an~l~a~~~G~~~v 244 (327)
.-..|.-. |. ==.++++.+++.++++||.+|.=.. +|........|++.|+.-|
T Consensus 195 Gt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KI 274 (347)
T PRK13399 195 GTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPVEEIQRGIKHGVRKV 274 (347)
T ss_pred ccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCHHHHHHHHHCCCeEE
Confidence 45666542 42 1234678888888668999997654 3556788899999999876
Q ss_pred ee
Q psy12516 245 DS 246 (327)
Q Consensus 245 d~ 246 (327)
..
T Consensus 275 Ni 276 (347)
T PRK13399 275 NI 276 (347)
T ss_pred Ee
Confidence 53
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.031 Score=52.43 Aligned_cols=105 Identities=16% Similarity=0.139 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec------CC----CCccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG------DT----IGVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~------Dt----~G~~~P~~~~~ 204 (327)
.++..+.++.+++.|+.+...++ +|-|. -+.+.+.+..+.+.+.+++.+.+. .| .....+.++.+
T Consensus 164 ~~~~~~~i~~l~~~Gi~v~~~~i--iGlpg---et~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~~~~~~~~~~~~~ 238 (323)
T PRK07094 164 FENRIACLKDLKELGYEVGSGFM--VGLPG---QTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLKDEKGGSLELTLK 238 (323)
T ss_pred HHHHHHHHHHHHHcCCeecceEE--EECCC---CCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcccCCCCCHHHHHH
Confidence 45567788899999998766555 44343 366888888999999988855431 11 11345678888
Q ss_pred HHHHHHHhcCCCeE----EEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 205 MLEDVLTVIPADRL----AVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 205 ~~~~~~~~~~~~~l----~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+++..|..+|+..+ ++-++... -...++.+||+.+=.++.
T Consensus 239 ~~a~~R~~lp~~~i~~~~~~~~~~~~-----~~~~~l~~Gan~~~~~~~ 282 (323)
T PRK07094 239 VLALLRLLLPDANIPATTALGTLNPD-----GREKGLKAGANVVMPNLT 282 (323)
T ss_pred HHHHHHHhCcCCCCcccCCccccCch-----hHHHHHHcCCceecCCCC
Confidence 88888888887444 22222221 224789999987665554
|
|
| >PRK08445 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.019 Score=54.65 Aligned_cols=231 Identities=12% Similarity=0.088 Sum_probs=129.6
Q ss_pred HHHHHHHHcCcCEEEecCC-ccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt-~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+.++++.+.|++.|.+.+- .-...+..+.++++.+++.+|++ .+|+-.... ++. +.
T Consensus 80 ~~~~~a~~~g~~~i~~~gg~~~~~~~e~~~~l~~~Ik~~~p~i--~~~a~s~~e----------------i~~-~a---- 136 (348)
T PRK08445 80 KKIEELLAIGGTQILFQGGVHPKLKIEWYENLVSHIAQKYPTI--TIHGFSAVE----------------IDY-IA---- 136 (348)
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCCc--EEEEccHHH----------------HHH-HH----
Confidence 4567788889998888752 23345667888889999988743 233211110 000 00
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhh-h-hhhhhHHHHHHh--hcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIA-V-FASASEMFSKRN--INCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~-l-~~~~sd~~~~~~--l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
+.+....++.+..|+ +.|++.+. + ....++...+.- -..+.++ ..++++.+++.|+++...+
T Consensus 137 ------~~~~~~~~e~L~~Lk----eAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~----~i~~i~~a~~~Gi~~~sg~ 202 (348)
T PRK08445 137 ------KISKISIKEVLERLQ----AKGLSSIPGAGAEILSDRVRDIIAPKKLDSDR----WLEVHRQAHLIGMKSTATM 202 (348)
T ss_pred ------HHhCCCHHHHHHHHH----HcCCCCCCCCceeeCCHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCeeeeEE
Confidence 111123344444444 34455442 2 333344333322 1344444 3588999999999998766
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHHcCcC-----EEE-----ecCCC--------CccCHHHHHHHHHHHHHhcCC-Ce
Q psy12516 157 SCVVGCPYEGAVPPHNVTRVATALYKMGCY-----EIS-----LGDTI--------GVGTPGTMRLMLEDVLTVIPA-DR 217 (327)
Q Consensus 157 ~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-----~i~-----l~Dt~--------G~~~P~~~~~~~~~~~~~~~~-~~ 217 (327)
+. |- .-++++..+....+.++..+ .+. -.+|- ...+|.+..++++..|-.+|+ ..
T Consensus 203 i~--G~----~Et~edr~~~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~ 276 (348)
T PRK08445 203 MF--GT----VENDEEIIEHWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKN 276 (348)
T ss_pred Ee--cC----CCCHHHHHHHHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCC
Confidence 53 32 23556666666666665443 221 12221 137788888888888776675 22
Q ss_pred EEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 218 LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 218 l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
|..-. ...|.. .+..|+.+||+-+++|+..=---+.|....+ .+.|+++.+.+..|+.
T Consensus 277 i~a~~-~~~g~~--~~~~~L~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g~~ 334 (348)
T PRK08445 277 IQSSW-VTQGSY--IGQLALLFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIGEI 334 (348)
T ss_pred ccCCC-cccCHH--HHHHHHhcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcCCC
Confidence 22222 133443 3578899999999999864221122222233 5678999888887764
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.027 Score=52.58 Aligned_cols=113 Identities=22% Similarity=0.278 Sum_probs=80.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C--CCChHHHHHHHHHHHHcCcCE--EEecCCCCcc-----
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G--AVPPHNVTRVATALYKMGCYE--ISLGDTIGVG----- 197 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~--r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~----- 197 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. . .++|++..++++ +.|+|. +.+.-..|.-
T Consensus 121 ~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~~ 197 (321)
T PRK07084 121 YEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK---KTGVDSLAISIGTSHGAYKFKPG 197 (321)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHH---HhCCCEEeeccccccccccCCCC
Confidence 45568889999999999999999888875444432 1 356766666554 468885 4444566653
Q ss_pred --CHHHHHHHHHHHHHhcCCCeEEEeecC-------------------CcCcHHHHHHHHHHhcCceeee
Q psy12516 198 --TPGTMRLMLEDVLTVIPADRLAVHCHD-------------------TYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 --~P~~~~~~~~~~~~~~~~~~l~~H~Hn-------------------~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.==.++++.+++.++++||.+|.=. ++|..-.....|++.|+..|..
T Consensus 198 ~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KINi 267 (321)
T PRK07084 198 QCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKINI 267 (321)
T ss_pred CCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceecc
Confidence 233334567788888866899999876 3388888999999999887653
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.042 Score=50.57 Aligned_cols=110 Identities=16% Similarity=0.209 Sum_probs=75.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCE--EEecCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYE--ISLGDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..++++ +.|+|. +.+.-..|.- .
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~ 186 (284)
T PRK09195 110 FAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVE---ATGIDSLAVAIGTAHGMYKGE 186 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHH---HHCcCEEeeccCccccccCCC
Confidence 34568889999999999999998888775444332 1357776666554 568885 4444456652 3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
|.==.++++.+++..+ +||.+|.=. |..-.....|++.|+..|..
T Consensus 187 p~Ld~~~L~~I~~~~~-vPLVLHGgS--G~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK09195 187 PKLDFDRLENIRQWVN-IPLVLHGAS--GLPTKDIQQTIKLGICKVNV 231 (284)
T ss_pred CcCCHHHHHHHHHHhC-CCeEEecCC--CCCHHHHHHHHHcCCeEEEe
Confidence 4333345677777664 688877654 66678888999999887654
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.11 Score=48.97 Aligned_cols=113 Identities=18% Similarity=0.314 Sum_probs=76.2
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC-------CC-----------CCCChHHHHHHHHHHHHcCcCE--EE
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCP-------YE-----------GAVPPHNVTRVATALYKMGCYE--IS 189 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~-------~~-----------~r~~~e~l~~~~~~~~~~g~~~--i~ 189 (327)
+.+|+++..++++++|+..|+.|++-|...-+.+ +. ..++|++..++++ +.|+|. +.
T Consensus 115 p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA~~Fv~---~TgvD~LAva 191 (347)
T TIGR01521 115 DYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEAADFVK---KTKVDALAVA 191 (347)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHHHHHHH---HHCcCEEehh
Confidence 3456688899999999999999998887753332 11 1346665555443 558885 44
Q ss_pred ecCCCCccC----H----HHHHHHHHHHHHhcCCCeEEEeecCCc-------------------CcHHHHHHHHHHhcCc
Q psy12516 190 LGDTIGVGT----P----GTMRLMLEDVLTVIPADRLAVHCHDTY-------------------GQALANILTAMEFGIS 242 (327)
Q Consensus 190 l~Dt~G~~~----P----~~~~~~~~~~~~~~~~~~l~~H~Hn~~-------------------g~a~an~l~a~~~G~~ 242 (327)
+.-..|.-. | .+ .++++.+++.++++||.+|.=... |.--.....|++.|+.
T Consensus 192 iGt~HG~Yk~~~~p~~~~Ld-~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~~~~g~p~e~i~~ai~~GI~ 270 (347)
T TIGR01521 192 IGTSHGAYKFTRKPTGEVLA-IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIKETYGVPVEEIVEGIKYGVR 270 (347)
T ss_pred cccccCCcCCCCCCChhhcC-HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhcccccccCCCCHHHHHHHHHCCCe
Confidence 445666542 4 23 335688888886689999876532 3446788899999988
Q ss_pred eeee
Q psy12516 243 VFDS 246 (327)
Q Consensus 243 ~vd~ 246 (327)
.|..
T Consensus 271 KVNi 274 (347)
T TIGR01521 271 KVNI 274 (347)
T ss_pred eEEe
Confidence 7653
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.061 Score=49.35 Aligned_cols=110 Identities=19% Similarity=0.246 Sum_probs=76.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC------CCCChHHHHHHHHHHHHcCcCEE--EecCCCCcc---CH
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE------GAVPPHNVTRVATALYKMGCYEI--SLGDTIGVG---TP 199 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~------~r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~---~P 199 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..+++++ .|+|.+ .+.-..|.- .|
T Consensus 105 ~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~---TgvD~LAvsiGt~HG~Y~~~~p 181 (276)
T cd00947 105 FEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEE---TGVDALAVAIGTSHGAYKGGEP 181 (276)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHH---HCCCEEEeccCccccccCCCCC
Confidence 45668899999999999999999888875444432 13567776666554 588854 444455543 45
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 200 GTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.==.++++.+++.++ +||.+|.= -|..-.....|++.|+..|..
T Consensus 182 ~L~~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi 225 (276)
T cd00947 182 KLDFDRLKEIAERVN-VPLVLHGG--SGIPDEQIRKAIKLGVCKINI 225 (276)
T ss_pred ccCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence 444456777777764 68877664 477777888999999987654
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.09 Score=48.45 Aligned_cols=110 Identities=16% Similarity=0.235 Sum_probs=74.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C----CCChHHHHHHHHHHHHcCcCEE--EecCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G----AVPPHNVTRVATALYKMGCYEI--SLGDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~----r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. . .++|++..+++ .+.|+|.+ .+.-..|.- .
T Consensus 110 ~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~Y~~~ 186 (286)
T PRK12738 110 FAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFV---ELTGVDSLAVAIGTAHGLYSKT 186 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHH---HHhCCCEEEeccCcccCCCCCC
Confidence 34568889999999999999999888875444432 0 35666666554 35589854 444455543 3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
|.==.++++.+++.. ++||.+|.=. |..-.+...|++.|+..|..
T Consensus 187 p~Ldfd~l~~I~~~~-~vPLVLHGgS--G~~~e~~~kai~~GI~KiNi 231 (286)
T PRK12738 187 PKIDFQRLAEIREVV-DVPLVLHGAS--DVPDEFVRRTIELGVTKVNV 231 (286)
T ss_pred CcCCHHHHHHHHHHh-CCCEEEeCCC--CCCHHHHHHHHHcCCeEEEe
Confidence 544455677777776 4688877654 55577888899999887653
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.03 Score=49.63 Aligned_cols=78 Identities=19% Similarity=0.141 Sum_probs=56.0
Q ss_pred HHHHHHHHcCcCEEEecCCc----cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTI----GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~----G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+-+..+.+.|+|.|-++|.. |-..||.++++++.+....|- ..+|=.. ...|.....++.+...|+++|.+++.
T Consensus 11 ~EA~~a~~~gaDiID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp-~~p~~~~~aa~~~a~~GvdyvKvGl~ 89 (235)
T PF04476_consen 11 EEAEEALAGGADIIDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLP-MKPGTASLAALGAAATGVDYVKVGLF 89 (235)
T ss_pred HHHHHHHhCCCCEEEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCC-CCchHHHHHHHHHHhcCCCEEEEecC
Confidence 45677888899999999998 889999999887766544331 1232222 33466555666667899999999888
Q ss_pred CCCC
Q psy12516 77 GLGG 80 (327)
Q Consensus 77 glg~ 80 (327)
|.+.
T Consensus 90 g~~~ 93 (235)
T PF04476_consen 90 GCKD 93 (235)
T ss_pred CCCC
Confidence 6653
|
|
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.086 Score=48.51 Aligned_cols=110 Identities=16% Similarity=0.213 Sum_probs=74.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEE--EecCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEI--SLGDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-|...-|.++. ..++|++..+++ .+.|+|.+ .+.-..|.- .
T Consensus 108 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~yk~~ 184 (282)
T TIGR01858 108 FAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFV---EATGVDSLAVAIGTAHGLYKKT 184 (282)
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHH---HHHCcCEEecccCccccCcCCC
Confidence 35568889999999999999999888875444432 135666666554 46789954 444455532 2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
|.==.++++.+++.++ +||.+|.=. |..-.....|+..|+..|..
T Consensus 185 p~Ldf~~L~~I~~~~~-iPLVlHGgS--G~~~e~~~~ai~~Gi~KiNi 229 (282)
T TIGR01858 185 PKLDFDRLAEIREVVD-VPLVLHGAS--DVPDEDVRRTIELGICKVNV 229 (282)
T ss_pred CccCHHHHHHHHHHhC-CCeEEecCC--CCCHHHHHHHHHcCCeEEEe
Confidence 4333346677777764 688777644 55677888899999987653
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.14 Score=47.02 Aligned_cols=130 Identities=12% Similarity=-0.009 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe------cCCC---CccCHHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL------GDTI---GVGTPGTMRLM 205 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l------~Dt~---G~~~P~~~~~~ 205 (327)
++...+.++.+++.|+++...+..-. -=+++++.+.+..+.+.+++.|-+ ..|- ...+|.++.+.
T Consensus 136 ~~~~l~~i~~a~~~Gi~v~sg~I~Gl------GEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~~~~~~~~~~~lr~ 209 (279)
T PRK08508 136 WEERFQTCENAKEAGLGLCSGGIFGL------GESWEDRISFLKSLASLSPHSTPINFFIPNPALPLKAPTLSADEALEI 209 (279)
T ss_pred HHHHHHHHHHHHHcCCeecceeEEec------CCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCCCCCCCCHHHHHHH
Confidence 45566678889999998876544322 135788888999999998884322 1221 23678899999
Q ss_pred HHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 206 LEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 206 ~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
++..|-.+|+..|-+-.=-. .+--..-..++.+|++-+=+ |-== .+.+.+.++=+.+++++|+..
T Consensus 210 iAv~Rl~lp~~~i~~~~gr~-~~~~~~~~~~~~~g~n~~~~---g~~l------t~~g~~~~~d~~~~~~~~~~~ 274 (279)
T PRK08508 210 VRLAKEALPNARLMVAGGRE-VVFGERQYEIFEAGANAIVI---GDYL------TTKGEAPKKDIEKLKSLGFEI 274 (279)
T ss_pred HHHHHHHCCCceeeecCChh-hhchhhHHHHHhcCCcceee---cCcc------cCCCCChHHHHHHHHHcCCCc
Confidence 98888888876665533110 00011235577888775211 1111 233456666677888888764
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.068 Score=49.38 Aligned_cols=111 Identities=23% Similarity=0.280 Sum_probs=74.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC---------CCChHHHHHHHHHHHHcCcCEE--EecCCCCc--c
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG---------AVPPHNVTRVATALYKMGCYEI--SLGDTIGV--G 197 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~---------r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~--~ 197 (327)
.+|+++..++++++|++.|+.|++-+...-|.++.. .++|++..+++ .+.|+|.+ .+.-..|. .
T Consensus 109 ~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv---~~TgvD~LAvaiGt~HG~y~~ 185 (287)
T PF01116_consen 109 FEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFV---EETGVDALAVAIGTAHGMYKG 185 (287)
T ss_dssp HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHH---HHHTTSEEEE-SSSBSSSBSS
T ss_pred HHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHH---HHhCCCEEEEecCccccccCC
Confidence 355688899999999999999999888765444321 24666665554 45689954 44455553 3
Q ss_pred --CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 198 --TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 --~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.==.++++.+++..|++||.+|. --|+.-.....+++.|+..|..
T Consensus 186 ~~~p~Ld~~~L~~I~~~~~~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi 234 (287)
T PF01116_consen 186 GKKPKLDFDRLKEIREAVPDIPLVLHG--GSGLPDEQIRKAIKNGISKINI 234 (287)
T ss_dssp SSSTC--HHHHHHHHHHHHTSEEEESS--CTTS-HHHHHHHHHTTEEEEEE
T ss_pred CCCcccCHHHHHHHHHhcCCCCEEEEC--CCCCCHHHHHHHHHcCceEEEE
Confidence 4443456788888887557887765 4567777889999999887654
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.12 Score=48.09 Aligned_cols=110 Identities=21% Similarity=0.236 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCE--EEecCCCCccC---
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYE--ISLGDTIGVGT--- 198 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~~--- 198 (327)
+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..++++ +.|+|. +.+.-+.|.-.
T Consensus 111 eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~ 187 (307)
T PRK05835 111 EENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVK---ESQVDYLAPAIGTSHGAFKFKG 187 (307)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHH---hhCCCEEEEccCccccccCCCC
Confidence 4558889999999999999999888775444332 0345665555443 568985 44555666543
Q ss_pred -HHHHHHHHHHHHHhcCCCeEEEeecCCc-------------------CcHHHHHHHHHHhcCceee
Q psy12516 199 -PGTMRLMLEDVLTVIPADRLAVHCHDTY-------------------GQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 -P~~~~~~~~~~~~~~~~~~l~~H~Hn~~-------------------g~a~an~l~a~~~G~~~vd 245 (327)
|.==-++++.+++.+ ++||.+|.=... |-.+-....|++.|+..|.
T Consensus 188 ~p~L~f~~L~~I~~~~-~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiN 253 (307)
T PRK05835 188 EPKLDFERLQEVKRLT-NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVN 253 (307)
T ss_pred CCccCHHHHHHHHHHh-CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEE
Confidence 433344677777776 478999875543 3334577778888887764
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.11 Score=47.96 Aligned_cols=111 Identities=18% Similarity=0.257 Sum_probs=75.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC---C-----CCChHHHHHHHHHHHHcCcCEEE--ecCCCCcc--
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE---G-----AVPPHNVTRVATALYKMGCYEIS--LGDTIGVG-- 197 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~---~-----r~~~e~l~~~~~~~~~~g~~~i~--l~Dt~G~~-- 197 (327)
+.+|+++..++++++|+..|+.|++-+...-|.++. . .++|+...++++ +.|+|.+. +.-..|.-
T Consensus 109 p~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~---~TgvD~LAvaiGt~HG~y~~ 185 (284)
T PRK12857 109 PLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVE---ETGVDALAIAIGTAHGPYKG 185 (284)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHH---HHCCCEEeeccCccccccCC
Confidence 345668999999999999999999888875444332 0 356666665553 55888544 44455543
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 198 TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.==.++++.+++.++ +||.+|.= -|..-.....|++.|+..|..
T Consensus 186 ~p~Ld~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi 231 (284)
T PRK12857 186 EPKLDFDRLAKIKELVN-IPIVLHGS--SGVPDEAIRKAISLGVRKVNI 231 (284)
T ss_pred CCcCCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence 35433456777777764 68877654 477788889999999887653
|
|
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.33 Score=46.65 Aligned_cols=132 Identities=13% Similarity=0.059 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc--CcCEEEe------cCC----CCccCHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM--GCYEISL------GDT----IGVGTPGTM 202 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~--g~~~i~l------~Dt----~G~~~P~~~ 202 (327)
++...+.++.+++.|+++...+. +|- . -+.++..+....+.++ .++.+.+ +.| ....+|.+.
T Consensus 212 ~e~rl~ti~~a~~~Gi~v~sg~I--iGl-g---Et~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~GTpL~~~~~~s~~e~ 285 (379)
T PLN02389 212 YDDRLETLEAVREAGISVCSGGI--IGL-G---EAEEDRVGLLHTLATLPEHPESVPINALVAVKGTPLEDQKPVEIWEM 285 (379)
T ss_pred HHHHHHHHHHHHHcCCeEeEEEE--ECC-C---CCHHHHHHHHHHHHhcccCCcEEecccceecCCCcCCCCCCCCHHHH
Confidence 56667789999999999876544 332 1 3566777777788777 4565543 244 124778899
Q ss_pred HHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 203 RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
.+++...|-.+|+..+.+-.-- .-+.......++.+||+-+=+ |. +-- .+.+.+.++=+.+++++|+...
T Consensus 286 lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~~l~~GAN~~~~-----g~--~~L-tt~g~~~~~d~~~~~~lg~~~~ 355 (379)
T PLN02389 286 VRMIATARIVMPKAMVRLSAGR-VRFSMAEQALCFLAGANSIFT-----GD--KLL-TTPNNDFDADQAMFKELGLIPK 355 (379)
T ss_pred HHHHHHHHHHCCCccccccccc-cccChhHHHHHHHhCCCEEEE-----CC--ccc-CCCCCChHHHHHHHHHcCCCcc
Confidence 9999998888887433221111 112223457889999986432 11 000 2344556666778888888754
|
|
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.24 Score=45.85 Aligned_cols=109 Identities=23% Similarity=0.294 Sum_probs=77.8
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----CC-CChHHHHHHHHHHHHcCcCEEEec--CCCCcc---CHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----GA-VPPHNVTRVATALYKMGCYEISLG--DTIGVG---TPGT 201 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~r-~~~e~l~~~~~~~~~~g~~~i~l~--Dt~G~~---~P~~ 201 (327)
+|.++..++++++|+..|..+.+-+....|.++. +. +++++..++. +.|+|.|.++ -..|.- +|.-
T Consensus 113 eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~----~tgvD~LAv~iG~vHG~y~t~~k~l 188 (293)
T PRK07315 113 EENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV----ETGIDFLAAGIGNIHGPYPENWEGL 188 (293)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHH----HcCCCEEeeccccccccCCCCCCcC
Confidence 4557888999999999999988777765443432 22 6777765544 5799988887 665543 2422
Q ss_pred HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 202 MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
=.++++.+++..+++||.+|.-. |....|...+++.|+..|..
T Consensus 189 ~~e~L~~i~~~~~~iPlVlhGGS--Gi~~e~~~~~i~~Gi~KiNv 231 (293)
T PRK07315 189 DLDHLEKLTEAVPGFPIVLHGGS--GIPDDQIQEAIKLGVAKVNV 231 (293)
T ss_pred CHHHHHHHHHhccCCCEEEECCC--CCCHHHHHHHHHcCCCEEEE
Confidence 34467888887766789887753 67789999999999998654
|
|
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.33 Score=45.72 Aligned_cols=127 Identities=16% Similarity=0.093 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe------cCC----CCccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL------GDT----IGVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l------~Dt----~G~~~P~~~~~ 204 (327)
++...+.++.+++.|+++...+. +|. .-+.+.+.+.++.+.+.+++.+.+ +.| ....+|.++.+
T Consensus 186 ~~~~i~~i~~a~~~Gi~v~~~~I--~Gl----gEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~~~~~~~~e~l~ 259 (336)
T PRK06256 186 YEDRIDTCEMVKAAGIEPCSGGI--IGM----GESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLENHPELTPLECLK 259 (336)
T ss_pred HHHHHHHHHHHHHcCCeeccCeE--EeC----CCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCCCCCCCHHHHHH
Confidence 45667788899999998765544 331 246788888899999999886654 233 12467889999
Q ss_pred HHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee--ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 205 MLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS--SIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~--s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
+++.+|-.+|+..|-+-..-..-+.-.- -.++ +||+-+=+ -+. ..|+..-++ +.+++++|+..
T Consensus 260 ~ia~~Rl~~p~~~I~~~~gr~~~~~~~~-~~~~-~g~~~~~~g~~lt----------~~g~~~~~d-~~~~~~~g~~~ 324 (336)
T PRK06256 260 TIAIFRLINPDKEIRIAGGREVNLRSLQ-PLGL-GGANSVIVGNYLT----------TVGQPATAD-LDMIEDLGFEI 324 (336)
T ss_pred HHHHHHHHCCCCeeEecCchhhhchhhH-HHHh-ccCceeeECCccc----------CCCCChHHH-HHHHHHCCCCc
Confidence 9999998889877776655422222111 2223 57765322 121 356665544 45788888775
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.1 Score=55.15 Aligned_cols=224 Identities=17% Similarity=0.197 Sum_probs=128.8
Q ss_pred HHHHHHHHcCcCEEEecCCccc---cCHHHHHHHHHHHHhhcCCCeeEEEec---------CccchHHHHHHHHH-HcCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIPADRLAVHCH---------DTYGQALANILTAM-EFGI 68 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~---~~p~~~~~~~~~~~~~~~~~~~~~H~h---------~~~g~~~~~~~~a~-~aG~ 68 (327)
+.++++.+.|+.+|++. .|. .....+.++++.+++.+|+ +.+|.- ...|+.....+..+ ++|.
T Consensus 564 ~~a~ea~~~G~tev~i~--gG~~p~~~~~~y~~lir~IK~~~p~--i~i~afsp~Ei~~~a~~~Gl~~~e~l~~LkeAGL 639 (843)
T PRK09234 564 DRAWEAWVAGATEVCMQ--GGIHPELPGTGYADLVRAVKARVPS--MHVHAFSPMEIVNGAARLGLSIREWLTALREAGL 639 (843)
T ss_pred HHHHHHHHCCCCEEEEe--cCCCCCcCHHHHHHHHHHHHHhCCC--eeEEecChHHHHHHHHHcCCCHHHHHHHHHHhCc
Confidence 45677888999999998 344 2345567788888888874 333332 33556566666666 4666
Q ss_pred cEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 69 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 69 ~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
+.+- |-++ ...+ +++-..+ . .+ ..+ .+...++++.|++.
T Consensus 640 ds~p----gt~a--------eil~-d~vr~~i----~-p~-------------------k~~----~~~wle~i~~Ah~l 678 (843)
T PRK09234 640 DTIP----GTAA--------EILD-DEVRWVL----T-KG-------------------KLP----TAEWIEVVTTAHEV 678 (843)
T ss_pred CccC----CCch--------hhCC-HHHHhhc----C-CC-------------------CCC----HHHHHHHHHHHHHc
Confidence 5543 1110 1111 1110000 0 00 011 22335678889999
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC------EEE----ecCC----C----CccCHHHHHHHHHHHH
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY------EIS----LGDT----I----GVGTPGTMRLMLEDVL 210 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~------~i~----l~Dt----~----G~~~P~~~~~~~~~~~ 210 (327)
|+++...+++ | ..-++++..+....+.+++.+ -|- -.+| . ...++.+...+++..|
T Consensus 679 Gi~~~stmm~--G----~~Et~edrv~hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaR 752 (843)
T PRK09234 679 GLRSSSTMMY--G----HVDTPRHWVAHLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALAR 752 (843)
T ss_pred CCCcccceEE--c----CCCCHHHHHHHHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHH
Confidence 9998766554 3 224678888888888887653 111 2232 1 2367888888888877
Q ss_pred HhcCCC--eEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q psy12516 211 TVIPAD--RLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEGMGIE 279 (327)
Q Consensus 211 ~~~~~~--~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~~g~~ 279 (327)
-.+|+. +|..-. ..+| ......++.+||+-+.+|+..----+.|....| ..+.+++....+..|+.
T Consensus 753 l~Lp~~i~~Iqa~w-v~lg--~~~~q~~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~~ 821 (843)
T PRK09234 753 IMLHGRIDNIQTSW-VKLG--VEGTRAMLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGRP 821 (843)
T ss_pred HhCCCCcccccchh-hhcC--HHHHHHHHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCCC
Confidence 666641 233222 2333 334578899999988877642111122221233 45789999888887754
|
|
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.22 Score=45.87 Aligned_cols=109 Identities=24% Similarity=0.260 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C--CCChHHHHHHHHHHHHcCcCE--EEecCCCCcc--CHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G--AVPPHNVTRVATALYKMGCYE--ISLGDTIGVG--TPGT 201 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~--r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~--~P~~ 201 (327)
+|+++..++++++|+..|+.|++-+...-|.++. . .++|++..++++ +.|+|. +.+.-..|.- .|.-
T Consensus 114 eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~L 190 (285)
T PRK07709 114 EENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE---ATGIDCLAPALGSVHGPYKGEPNL 190 (285)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH---HhCCCEEEEeecccccCcCCCCcc
Confidence 4558889999999999999999888875444432 1 367777666554 458985 4444455542 3433
Q ss_pred HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 202 MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
=.++++.+++.+ ++||.+|.= .|..-.....|++.|+..|..
T Consensus 191 ~~~~L~~I~~~~-~iPLVLHGg--SG~~~e~~~~ai~~Gi~KiNi 232 (285)
T PRK07709 191 GFAEMEQVRDFT-GVPLVLHGG--TGIPTADIEKAISLGTSKINV 232 (285)
T ss_pred CHHHHHHHHHHH-CCCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence 334567777766 468877654 577778888999999877643
|
|
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.12 Score=46.16 Aligned_cols=66 Identities=17% Similarity=0.173 Sum_probs=45.5
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHH-HHHHcCCcEEE
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANIL-TAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~-~a~~aG~~~id 72 (327)
+.++++.+.|+| .+-+.| |...|.-. .+.++++++..|..++..|.|-+. ..+.+ ...++|++++-
T Consensus 23 ~~~~~l~~~~~~~~H~DimD--g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~---p~~~i~~~~~~Gad~it 93 (228)
T PTZ00170 23 DEAQDVLSGGADWLHVDVMD--GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSN---PEKWVDDFAKAGASQFT 93 (228)
T ss_pred HHHHHHHHcCCCEEEEeccc--CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCC---HHHHHHHHHHcCCCEEE
Confidence 346778888998 578888 77777632 356888888887788999999332 22333 33367888764
|
|
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.39 Score=44.30 Aligned_cols=108 Identities=22% Similarity=0.275 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC----------CCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc--
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG----------AVPPHNVTRVATALYKMGCYEISL--GDTIGVG-- 197 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~----------r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~-- 197 (327)
+|.++..++++++|+..|+.|.+-+... |..+.+ .++|++..++.+ +.|+|.+.+ .-+.|.-
T Consensus 111 eeNi~~t~~v~~~a~~~gv~VE~ElG~v-gg~e~~v~~~~~~~~~~T~pe~a~~f~~---~tgvD~LAvaiGt~Hg~y~~ 186 (286)
T PRK06801 111 EENVRQTREVVKMCHAVGVSVEAELGAV-GGDEGGALYGEADSAKFTDPQLARDFVD---RTGIDALAVAIGNAHGKYKG 186 (286)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEeecCcc-cCCCCCcccCCcccccCCCHHHHHHHHH---HHCcCEEEeccCCCCCCCCC
Confidence 3447778889999999999887766653 322211 234455444443 569997766 2233321
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 198 TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.-=.++++.+++..+ +||.+|.=. |....+...++++|++.|..
T Consensus 187 ~~~l~~e~l~~i~~~~~-~PLVlHGGS--gi~~e~~~~~i~~Gi~KINv 232 (286)
T PRK06801 187 EPKLDFARLAAIHQQTG-LPLVLHGGS--GISDADFRRAIELGIHKINF 232 (286)
T ss_pred CCCCCHHHHHHHHHhcC-CCEEEECCC--CCCHHHHHHHHHcCCcEEEe
Confidence 12122334666666654 688877643 56788999999999998754
|
|
| >COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.14 Score=49.03 Aligned_cols=231 Identities=13% Similarity=0.071 Sum_probs=123.6
Q ss_pred HHHHHHHHcCcCEEEecCCcccc---CHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~---~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
+.++++.+.|+.+|.|.= |.- ++.-..++++.+++.+| .++.|.+.... +..+
T Consensus 97 ~~~~~~~~~G~~Evli~g--G~~p~~~~~y~~~~~~~ik~~~p--~~~i~a~s~~e--------------------i~~~ 152 (370)
T COG1060 97 EEVREAVKRGITEVLIVG--GEHPELSLEYYEELFRTIKEEFP--DLHIHALSAGE--------------------ILFL 152 (370)
T ss_pred HHHHHHHHcCCeEEEEec--CcCCCcchHHHHHHHHHHHHhCc--chhhcccCHHH--------------------hHHH
Confidence 345556666777666632 221 12234555666666665 34444444332 2222
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhh--hhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFA--SASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~--~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
. +.+.++.++++..|+.. |+|.+--.. -.++...+.-. ......+.-.++.+.|++.|++..+..
T Consensus 153 ~-------~~~~~s~~E~l~~Lk~a----Gldsmpg~~aeil~e~vr~~~~--p~K~~~~~wle~~~~Ah~lGI~~tatm 219 (370)
T COG1060 153 A-------REGGLSYEEVLKRLKEA----GLDSMPGGGAEILSEEVRKIHC--PPKKSPEEWLEIHERAHRLGIPTTATM 219 (370)
T ss_pred H-------hccCCCHHHHHHHHHHc----CCCcCcCcceeechHHHHHhhC--CCCCCHHHHHHHHHHHHHcCCCcccee
Confidence 2 34567778877777644 444332111 01121111111 222224456677899999999987766
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHH----c-CcCEEEe-----cCC------CCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 157 SCVVGCPYEGAVPPHNVTRVATALYK----M-GCYEISL-----GDT------IGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 157 ~~~~g~~~~~r~~~e~l~~~~~~~~~----~-g~~~i~l-----~Dt------~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
.+-. --++++...-...+.+ . |...+.+ ..+ ..-.++.++...++..|-.++. .+..
T Consensus 220 l~Gh------~E~~ed~~~hl~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~-~i~~ 292 (370)
T COG1060 220 LLGH------VETREDRIDHLEHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN-NISN 292 (370)
T ss_pred EEEe------cCCHHHHHHHHHHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC-cccc
Confidence 6522 1234444444444443 2 3332222 122 1224556666666666644442 2222
Q ss_pred eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-----CccHHHHHHHHHhCCCCC
Q psy12516 221 HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-----NVATEDLVYMLEGMGIET 280 (327)
Q Consensus 221 H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-----n~~~e~~~~~l~~~g~~~ 280 (327)
.---...+++.-...++.+|++-+.++... |+-. + .+| +.+.|+++..+++.|+..
T Consensus 293 ~~a~w~~~g~~~~~~~l~~GanD~ggt~~~--E~v~-~-~a~~~~~~~~~~eel~~~i~~aG~~p 353 (370)
T COG1060 293 IQASWLRDGVILAQAALLSGANDLGGTGYE--EKVN-P-AAGAFSGDWRSVEELAALIKEAGRIP 353 (370)
T ss_pred ccCcccccchHHHHHHHHhCcccCcCCCcc--cccc-c-ccccccCCCCCHHHHHHHHHHcCCCe
Confidence 222244566677889999999988888776 5311 1 244 889999999999988765
|
|
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.22 Score=45.90 Aligned_cols=110 Identities=17% Similarity=0.207 Sum_probs=75.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEISL--GDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..++++. .|+|.+.+ .-..|.- .
T Consensus 110 ~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~---TgvD~LAvaiGt~HG~y~~~ 186 (284)
T PRK12737 110 FEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVER---TGIDSLAVAIGTAHGLYKGE 186 (284)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHH---hCCCEEeeccCccccccCCC
Confidence 45668889999999999999999888875444432 14577776666554 68985444 4455653 3
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
|.==.++++.+++..+ +||.+|. .-|..-.....|++.|+..|..
T Consensus 187 p~Ld~~~L~~I~~~~~-iPLVlHG--gSG~~~e~~~kai~~Gi~KiNi 231 (284)
T PRK12737 187 PKLDFERLAEIREKVS-IPLVLHG--ASGVPDEDVKKAISLGICKVNV 231 (284)
T ss_pred CcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEEe
Confidence 4323345777776654 6887765 4466677888899999987654
|
|
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.097 Score=49.68 Aligned_cols=147 Identities=16% Similarity=0.142 Sum_probs=92.3
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...++|++.+.+.|+. |.++|...++.+ +.+++..+..++.+|.+.+. ..+.-+ +.|++.+
T Consensus 183 ~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~-----~~~~~~~~~~~~~i 257 (345)
T PLN02433 183 EYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG-----GLLERLAGTGVDVI 257 (345)
T ss_pred HHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH-----HHHHHHHhcCCCEE
Confidence 56777788999999999965 888898866443 34444333456778877653 334444 5688766
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
.. +. +.++++....+.+ ..+.-+++.. .+.-+++++.+..+++++.+...|
T Consensus 258 ~~-----d~---------~~dl~e~~~~~g~~~~l~GNi~p~-------------ll~gt~e~i~~~v~~~i~~~~~~g- 309 (345)
T PLN02433 258 GL-----DW---------TVDMADARRRLGSDVAVQGNVDPA-------------VLFGSKEAIEKEVRDVVKKAGPQG- 309 (345)
T ss_pred Ec-----CC---------CCCHHHHHHHhCCCeEEEeCCCch-------------hhCCCHHHHHHHHHHHHHHcCCCC-
Confidence 52 21 2456665555442 2333334432 123456667777888888754444
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY 186 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~ 186 (327)
.+. ..||.....+++|.+..+.+.+.++|..
T Consensus 310 ~Il-----~~Gc~i~~~tp~eNi~a~v~av~~~~~~ 340 (345)
T PLN02433 310 HIL-----NLGHGVLVGTPEENVAHFFDVARELRYE 340 (345)
T ss_pred eEE-----ecCCCCCCCCCHHHHHHHHHHHHHhChh
Confidence 322 2556555578999999999999987754
|
|
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.29 Score=46.53 Aligned_cols=232 Identities=13% Similarity=0.087 Sum_probs=125.1
Q ss_pred HHHHHHHHcCcCEEEecCCcccc---CHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~---~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
+.++++.+.|+.++.+ +.|.- +.+.+.++++.+++.+|+ +|.|-..- ++.+. +
T Consensus 83 ~~a~~~~~~G~~~i~i--~gG~~p~~~~e~~~~~i~~ik~~~p~----l~~~~~s~----------------~ei~~--~ 138 (350)
T PRK05927 83 SLMQRYVSAGVKTVLL--QGGVHPQLGIDYLEELVRITVKEFPS----LHPHFFSA----------------VEIAH--A 138 (350)
T ss_pred HHHHHHHHCCCCEEEE--eCCCCCCCCHHHHHHHHHHHHHHCCC----CcccCCCH----------------HHHHH--H
Confidence 5677788889999998 45553 244567778888887763 33332211 11110 0
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhh--hhhhhhHHHHHHhhcCChHH-HHHHHHHHHHHHHHcCCeEEEE
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIA--VFASASEMFSKRNINCTIEE-SLERFSEVVSTALTNGIRVRGY 155 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~--l~~~~sd~~~~~~l~~s~ee-~i~~~~~~v~~a~~~Gi~v~~~ 155 (327)
-. ..|.. +++.+..|++.++ +.+. -....++.+.+. .++.. ..++-.++++.|++.|+++...
T Consensus 139 ~~------~~G~~-~~e~l~~Lk~aGl----~~l~g~~~Et~~~~~~~~---~~p~k~~~~~rl~~i~~A~~lGi~~~sg 204 (350)
T PRK05927 139 AQ------VSGIS-TEQALERLWDAGQ----RTIPGGGAEILSERVRKI---ISPKKMGPDGWIQFHKLAHRLGFRSTAT 204 (350)
T ss_pred HH------hcCCC-HHHHHHHHHHcCc----ccCCCCCchhCCHHHhhc---cCCCCCCHHHHHHHHHHHHHcCCCcCce
Confidence 00 12223 4444454544433 3221 111112222111 11111 1345667899999999998766
Q ss_pred EeeeccCCCCCCCChHHHHHHHHHHHHcCcC--EEE--ec------CCC---C---ccCHHHHHHHHHHHHHhcCCCeEE
Q psy12516 156 ISCVVGCPYEGAVPPHNVTRVATALYKMGCY--EIS--LG------DTI---G---VGTPGTMRLMLEDVLTVIPADRLA 219 (327)
Q Consensus 156 l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~--~i~--l~------Dt~---G---~~~P~~~~~~~~~~~~~~~~~~l~ 219 (327)
+.+-.| =+.++..+....+.+++-+ -+. |+ +|- . ..+|.+..+.++..|-.+|+++.
T Consensus 205 ~l~G~g------Et~e~ri~~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~- 277 (350)
T PRK05927 205 MMFGHV------ESPEDILLHLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDH- 277 (350)
T ss_pred eEEeeC------CCHHHHHHHHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCc-
Confidence 554222 2455555555556555411 111 23 342 1 47888988988888877786542
Q ss_pred EeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 220 VHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 220 ~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
.-. --..++...+..++.+||+-+++++..-=--|.++...+ .+++++...++..|+..
T Consensus 278 i~~-~w~~~G~~~~q~~L~~GanDlggt~~~e~v~~~ag~~~~-~~~~~l~~~i~~~G~~~ 336 (350)
T PRK05927 278 IAA-SWFGEGKEEGAKGLHYGADDFGGTILDESVHKCTGWDLQ-SSEEEICAMILSEGFIP 336 (350)
T ss_pred ccC-CccccCHHHHHHHHhCCCccccCCCccceeeccCCCCCc-CCHHHHHHHHHHcCCCe
Confidence 111 112344566778999999999988742211122222222 36888888888877654
|
|
| >PRK00115 hemE uroporphyrinogen decarboxylase; Validated | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.11 Score=49.28 Aligned_cols=145 Identities=18% Similarity=0.210 Sum_probs=85.1
Q ss_pred HHHHHHHHcCcCEEEecCC-ccccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDT-IGVGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt-~G~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...++|+|.|.+.|+ .+.++|...++.+ +.+++..|..+ .+|...+.. +.+..+ +.|++.+
T Consensus 190 ~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~-ilh~cg~~~----~~~~~~~~~~~~~i 264 (346)
T PRK00115 190 AYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVP-VILFGKGAG----ELLEAMAETGADVV 264 (346)
T ss_pred HHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCC-EEEEcCCcH----HHHHHHHhcCCCEE
Confidence 5677788899999999994 5888998866554 33333322233 445444332 334445 5677766
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
... . ..++++....+.+ ..+.-|++... +..+++++.+..+++++.+...|+
T Consensus 265 s~d-----~---------~~dl~~~k~~~g~~~~i~Gni~p~l-------------l~gt~e~i~~~~~~~i~~~~~~gf 317 (346)
T PRK00115 265 GLD-----W---------TVDLAEARRRVGDKKALQGNLDPAV-------------LLAPPEAIEEEVRAILDGGGGPGH 317 (346)
T ss_pred eeC-----C---------CCCHHHHHHHcCCCeEEEeCCChhH-------------hcCCHHHHHHHHHHHHHHhCCCCe
Confidence 421 1 2455555554443 33333444311 112456677778888887743342
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
-+ +.||.....+++|.+..+.+.+.+++
T Consensus 318 Il------~~Gc~i~~~tp~eNi~a~v~a~~~y~ 345 (346)
T PRK00115 318 IF------NLGHGILPETPPENVKALVEAVHELS 345 (346)
T ss_pred ee------ecCCcCCCCcCHHHHHHHHHHHHHhc
Confidence 22 24565444689999999998887754
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.42 Score=44.04 Aligned_cols=110 Identities=19% Similarity=0.291 Sum_probs=70.2
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCC-CC-----C---CCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc-
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCP-YE-----G---AVPPHNVTRVATALYKMGCYEISL--GDTIGVG- 197 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~-~~-----~---r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~- 197 (327)
+.+|.++..++++++|+..|+.+.+-+.. .|.. +. + .++|++..++. .+.|+|.+.+ .-..|.-
T Consensus 103 ~~eeNi~~t~~vv~~a~~~gv~vE~ElG~-vg~~e~~~~~~~~~~~~t~peea~~f~---~~TgvD~LAvaiGt~HG~y~ 178 (283)
T PRK08185 103 PYEENVALTKEVVELAHKVGVSVEGELGT-IGNTGTSIEGGVSEIIYTDPEQAEDFV---SRTGVDTLAVAIGTAHGIYP 178 (283)
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEEee-ccCcccccccccccccCCCHHHHHHHH---HhhCCCEEEeccCcccCCcC
Confidence 34566888999999999999999887765 3322 11 1 23555554433 3448886655 2333332
Q ss_pred ---CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 198 ---TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 198 ---~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.|.---++++.+++..+ +||.+|.--..+ -.....|+..|+.-|..
T Consensus 179 ~~~kp~L~~e~l~~I~~~~~-iPLVlHGgsg~~--~e~~~~ai~~GI~KiNi 227 (283)
T PRK08185 179 KDKKPELQMDLLKEINERVD-IPLVLHGGSANP--DAEIAESVQLGVGKINI 227 (283)
T ss_pred CCCCCCcCHHHHHHHHHhhC-CCEEEECCCCCC--HHHHHHHHHCCCeEEEe
Confidence 23323556777777664 689888766544 66778899999887653
|
|
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.081 Score=49.86 Aligned_cols=170 Identities=17% Similarity=0.156 Sum_probs=105.9
Q ss_pred HHHHHHHHHhhcCCCeeEEEecCccchH--HHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcc
Q psy12516 29 MRLMLEDVLTVIPADRLAVHCHDTYGQA--LANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQ 106 (327)
Q Consensus 29 ~~~~~~~~~~~~~~~~~~~H~h~~~g~~--~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~ 106 (327)
+..++..+.+... +|+.+|. |-|.. +..+..|+++|.+.+..++.
T Consensus 80 ~~~~v~~~A~~~~-VPValHL--DHg~~~~~~~i~~ai~~g~~~v~~a~~------------------------------ 126 (350)
T PRK09197 80 GAKHVHEVAEHYG-VPVILHT--DHCAKKLLPWIDGLLDAGEKHFAAGGK------------------------------ 126 (350)
T ss_pred HHHHHHHHHHHCC-CCEEEEC--CCCCCcchHHHHHHHHhhHHHHHhcCC------------------------------
Confidence 4455555555553 7777665 44433 56777777777665554432
Q ss_pred cCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC----------CCChHHHHHH
Q psy12516 107 CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG----------AVPPHNVTRV 176 (327)
Q Consensus 107 ~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~----------r~~~e~l~~~ 176 (327)
.|++.+. ++ .| ..+.+|+++..++++++|+..|+.|++-+...-|.++.. .++|++..++
T Consensus 127 ~gftSVM-iD-gS--------~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~TdPeeA~~F 196 (350)
T PRK09197 127 PLFSSHM-ID-LS--------EEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYTQPEDVLYA 196 (350)
T ss_pred CCceeEE-ee-CC--------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccCCHHHHHHH
Confidence 2222221 11 11 134466788999999999999999998888754444321 3677777766
Q ss_pred HHHHHHcCc----C--EEEecCCCCccC---HHHHHHHHHHHHHhc--------CCCeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 177 ATALYKMGC----Y--EISLGDTIGVGT---PGTMRLMLEDVLTVI--------PADRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 177 ~~~~~~~g~----~--~i~l~Dt~G~~~---P~~~~~~~~~~~~~~--------~~~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
+++ .|+ | .+.+.-..|.-. |.==.++++.+++.+ +++||.+|.=. |..-.....|++.
T Consensus 197 v~~---Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgS--Gipde~i~~ai~~ 271 (350)
T PRK09197 197 YEA---LGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGS--GSTLEEIREAVSY 271 (350)
T ss_pred HHH---hCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCC--CCCHHHHHHHHHC
Confidence 654 355 6 466666777643 433344566666655 25788887654 7777888999999
Q ss_pred cCceeee
Q psy12516 240 GISVFDS 246 (327)
Q Consensus 240 G~~~vd~ 246 (327)
|+..|..
T Consensus 272 GI~KINi 278 (350)
T PRK09197 272 GVVKMNI 278 (350)
T ss_pred CCeeEEe
Confidence 9887653
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.57 Score=45.86 Aligned_cols=92 Identities=20% Similarity=0.208 Sum_probs=57.8
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCC-CccCHHHHHHHHHHHHHhcCCCe
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADR 217 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~-G~~~P~~~~~~~~~~~~~~~~~~ 217 (327)
.++++++++.|+.+..-+ .+++ .+ .+.++.+.+.|+|.|.+.-.. +...+....+.++.+++..+ +|
T Consensus 97 ~~~i~~a~~~G~~~~~g~---~s~~----t~----~e~~~~a~~~GaD~I~~~pg~~~~~~~~~~~~~l~~l~~~~~-iP 164 (430)
T PRK07028 97 EDAVRAARKYGVRLMADL---INVP----DP----VKRAVELEELGVDYINVHVGIDQQMLGKDPLELLKEVSEEVS-IP 164 (430)
T ss_pred HHHHHHHHHcCCEEEEEe---cCCC----CH----HHHHHHHHhcCCCEEEEEeccchhhcCCChHHHHHHHHhhCC-Cc
Confidence 456778888888765311 1111 11 233466677899988664211 11112233456777777655 68
Q ss_pred EEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 218 LAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 218 l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+.+|+ |....|...++++|++.|=.
T Consensus 165 I~a~G----GI~~~n~~~~l~aGAdgv~v 189 (430)
T PRK07028 165 IAVAG----GLDAETAAKAVAAGADIVIV 189 (430)
T ss_pred EEEEC----CCCHHHHHHHHHcCCCEEEE
Confidence 88887 89999999999999987543
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.79 Score=42.26 Aligned_cols=110 Identities=20% Similarity=0.261 Sum_probs=68.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCC------CCCCChHHHHHHHHHHHHcCcCEEEec--CCCCcc--CHH
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPY------EGAVPPHNVTRVATALYKMGCYEISLG--DTIGVG--TPG 200 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~------~~r~~~e~l~~~~~~~~~~g~~~i~l~--Dt~G~~--~P~ 200 (327)
.+|.++..++++++++..|+.|.+-+...-|.++ .+-+++|+..++.+ +.|+|.+.++ -..|.. .|.
T Consensus 110 ~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~---~tgvD~Lavs~Gt~hg~~~~~~~ 186 (282)
T TIGR01859 110 FEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVK---ETGVDYLAAAIGTSHGKYKGEPG 186 (282)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHH---HHCcCEEeeccCccccccCCCCc
Confidence 3455788889999999999988766654222222 12456666554443 3589987742 222221 122
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
-=.++++.+++..+ +||..|. .-|....|...++++|++.|..
T Consensus 187 l~~e~L~~i~~~~~-iPlv~hG--gSGi~~e~i~~~i~~Gi~kiNv 229 (282)
T TIGR01859 187 LDFERLKEIKELTN-IPLVLHG--ASGIPEEQIKKAIKLGIAKINI 229 (282)
T ss_pred cCHHHHHHHHHHhC-CCEEEEC--CCCCCHHHHHHHHHcCCCEEEE
Confidence 12334666776664 6776654 4477778999999999987654
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.4 Score=45.98 Aligned_cols=133 Identities=13% Similarity=0.110 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-----EE-----ecCCC--------Ccc
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-----IS-----LGDTI--------GVG 197 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-----i~-----l~Dt~--------G~~ 197 (327)
++..++++.+|+.|+++...+.+ | .-=++++..+....+.+++.+. +. -.+|- +..
T Consensus 207 ~e~l~~i~~a~~~Gi~~~sgmi~--G----~gEt~edrv~~l~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~ 280 (370)
T PRK05926 207 QGFLEIHKTAHSLGIPSNATMLC--Y----HRETPEDIVTHMSKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSR 280 (370)
T ss_pred HHHHHHHHHHHHcCCcccCceEE--e----CCCCHHHHHHHHHHHHhcCCccCCeeeeEecccCCCCCcccccccccCCC
Confidence 34567899999999999876443 2 1236778888888888876652 22 12332 124
Q ss_pred CHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHH
Q psy12516 198 TPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYML 273 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l 273 (327)
++.+..++++..|=.+++ +...+ +. ++...+..++.+||+-+++|+..=---+.|....+ ..+.+++....
T Consensus 281 ~~~~~lr~~AvaRl~l~n~~~iqa~w---~~--~G~~~~q~~L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i 355 (370)
T PRK05926 281 HSIPPASIIAVARLFLDNFPNIKALW---NY--LGIEVALHLLSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLI 355 (370)
T ss_pred ChHHHHHHHHHHHHhcCCCcccccCc---hh--cCHHHHHHHHhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHH
Confidence 455555555544433333 22222 22 34557788999999999999874321122222233 34678888888
Q ss_pred HhCCCC
Q psy12516 274 EGMGIE 279 (327)
Q Consensus 274 ~~~g~~ 279 (327)
+..|..
T Consensus 356 ~~~g~~ 361 (370)
T PRK05926 356 TQQGRI 361 (370)
T ss_pred HHcCCC
Confidence 877754
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.21 Score=46.08 Aligned_cols=109 Identities=23% Similarity=0.299 Sum_probs=74.6
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C--CCChHHHHHHHHHHHHcCcCEE--EecCCCCcc--CHH
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G--AVPPHNVTRVATALYKMGCYEI--SLGDTIGVG--TPG 200 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~--r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~--~P~ 200 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. . .++|++..++++ +.|+|.+ .+.-..|.- .|.
T Consensus 113 ~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~ 189 (286)
T PRK08610 113 FEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVE---KTGIDALAPALGSVHGPYKGEPK 189 (286)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHH---HHCCCEEEeeccccccccCCCCC
Confidence 45668889999999999999999888875444432 1 367777666654 5688854 444455543 242
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
==.++++.+++.+ ++||.+|. --|..-.....|+..|+..|.
T Consensus 190 Ld~~~L~~I~~~~-~vPLVLHG--gSG~~~e~~~~ai~~GI~KiN 231 (286)
T PRK08610 190 LGFKEMEEIGLST-GLPLVLHG--GTGIPTKDIQKAIPFGTAKIN 231 (286)
T ss_pred CCHHHHHHHHHHH-CCCEEEeC--CCCCCHHHHHHHHHCCCeEEE
Confidence 2244566667666 46887765 457777888899999987664
|
|
| >TIGR01464 hemE uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.24 Score=46.78 Aligned_cols=143 Identities=15% Similarity=0.173 Sum_probs=83.4
Q ss_pred HHHHHHHHcCcCEEEecC-CccccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGD-TIGVGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~G~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...+.|+|.+.+.| +.+..+|...++.+ +.+++..+..++ +|.+.+.. +.+..+ +.|++.+
T Consensus 184 ~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~i-lh~cg~~~----~~~~~~~~~~~~~~ 258 (338)
T TIGR01464 184 EYLVEQVKAGAQAVQIFDSWAGALSPEDFEEFVLPYLKKIIEEVKARLPNVPV-ILFAKGAG----HLLEELAETGADVV 258 (338)
T ss_pred HHHHHHHHcCCCEEEEECCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCE-EEEeCCcH----HHHHHHHhcCCCEE
Confidence 567778889999999999 56899999876544 344433233333 66555432 455555 5688776
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
... . ..++.+....+.+ ..+.-|++...+ ..+.+++.+..+++++.+...+-
T Consensus 259 s~d-----~---------~~dl~e~~~~~~~~~~i~Gni~p~~l-------------~gt~e~i~~~v~~~l~~~~~~~g 311 (338)
T TIGR01464 259 GLD-----W---------TVDLKEARKRVGPGVAIQGNLDPAVL-------------YAPEEALEEKVEKILEAFGGKSR 311 (338)
T ss_pred EeC-----C---------CCCHHHHHHHhCCCeeEEeCCChHHh-------------cCCHHHHHHHHHHHHHHhccCCC
Confidence 421 1 2345555555443 244444543211 12456667777777777643332
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
.+. +.||..-..+++|.+..+.+.+.
T Consensus 312 ~Il-----~~Gc~i~~~tp~eni~a~v~a~~ 337 (338)
T TIGR01464 312 YIF-----NLGHGILPDTPPENVKALVEYVH 337 (338)
T ss_pred cee-----cCCCcCCCCcCHHHHHHHHHHHh
Confidence 221 24565444678888887776653
|
This model represents uroporphyrinogen decarboxylase (HemE), which converts uroporphyrinogen III to coproporphyrinogen III. This step takes the pathway toward protoporphyrin IX, a common precursor of both heme and chlorophyll, rather than toward precorrin 2 and its products. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.24 Score=45.55 Aligned_cols=111 Identities=19% Similarity=0.333 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC------CCCChHHHHHHHHHHHHcCcCEEE--ecCCCCccC-HH
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE------GAVPPHNVTRVATALYKMGCYEIS--LGDTIGVGT-PG 200 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~------~r~~~e~l~~~~~~~~~~g~~~i~--l~Dt~G~~~-P~ 200 (327)
+.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..+++ .+.|+|.+. +.-..|.-. |.
T Consensus 109 ~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv---~~TgvD~LAvaiGt~HG~Y~~p~ 185 (283)
T PRK07998 109 PFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFV---ERTGCDMLAVSIGNVHGLEDIPR 185 (283)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHH---HHhCcCeeehhccccccCCCCCC
Confidence 345568889999999999999998877775444432 135776665444 456888543 333444321 43
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
-=.++++.+++..+ +||.+|.=. |..-.....|++.|+..|..
T Consensus 186 l~~~~l~~I~~~~~-vPLVlHGgS--G~~~e~~~~ai~~Gi~KiNi 228 (283)
T PRK07998 186 IDIPLLKRIAEVSP-VPLVIHGGS--GIPPEILRSFVNYKVAKVNI 228 (283)
T ss_pred cCHHHHHHHHhhCC-CCEEEeCCC--CCCHHHHHHHHHcCCcEEEE
Confidence 22466777777764 688887654 66667778899999887653
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=96.13 E-value=0.077 Score=52.02 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~ 215 (327)
+.+++.+++|++.|.++.+.+-.. + ..-..+.+.+..+.+.+.|+|.|.+.|. .++..+++..|+
T Consensus 46 edl~eav~~ah~~g~kvyvt~n~i---~--~e~el~~~~~~l~~l~~~gvDgvIV~d~----------G~l~~~ke~~p~ 110 (443)
T PRK15452 46 ENLALGINEAHALGKKFYVVVNIA---P--HNAKLKTFIRDLEPVIAMKPDALIMSDP----------GLIMMVREHFPE 110 (443)
T ss_pred HHHHHHHHHHHHcCCEEEEEecCc---C--CHHHHHHHHHHHHHHHhCCCCEEEEcCH----------HHHHHHHHhCCC
Confidence 346778999999999986654431 1 1234456777788888999999999883 245667776776
Q ss_pred CeEEE
Q psy12516 216 DRLAV 220 (327)
Q Consensus 216 ~~l~~ 220 (327)
.+++.
T Consensus 111 l~ih~ 115 (443)
T PRK15452 111 MPIHL 115 (443)
T ss_pred CeEEE
Confidence 65544
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.41 Score=44.23 Aligned_cols=109 Identities=21% Similarity=0.253 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEE--EecCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEI--SLGDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~--~ 198 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..+++ .+.|+|.+ .+.-..|.- .
T Consensus 113 ~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~~TgvD~LAvaiGt~HG~y~~~ 189 (288)
T TIGR00167 113 FEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV---KLTGVDSLAAAIGNVHGVYKGE 189 (288)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH---hccCCcEEeeccCccccccCCC
Confidence 45668899999999999999999888875444432 135666554443 45688854 444455543 3
Q ss_pred HH-HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 199 PG-TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 P~-~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
|. ==.++++.+++.++ +||.+|.=. |..-.....|++.|+..|.
T Consensus 190 p~~Ld~~~L~~I~~~v~-vPLVlHGgS--G~~~e~~~~ai~~Gi~KiN 234 (288)
T TIGR00167 190 PKGLDFERLEEIQKYVN-LPLVLHGGS--GIPDEEIKKAISLGVVKVN 234 (288)
T ss_pred CCccCHHHHHHHHHHhC-CCEEEeCCC--CCCHHHHHHHHHcCCeEEE
Confidence 44 12345777777664 688887654 6777788899999987664
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.67 Score=40.47 Aligned_cols=136 Identities=19% Similarity=0.189 Sum_probs=78.3
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|+.+++..+.-. +.+++.|.|.+.+........ .-..++..+.+..+++.++ |..+.+.+.. ...
T Consensus 64 g~~~~~~k~~ev-e~A~~~GAdevdvv~~~g~~~-----~~~~~~~~~ei~~v~~~~~--g~~lkvI~e~-------~~l 128 (203)
T cd00959 64 GATTTEVKVAEA-REAIADGADEIDMVINIGALK-----SGDYEAVYEEIAAVVEACG--GAPLKVILET-------GLL 128 (203)
T ss_pred CCCcHHHHHHHH-HHHHHcCCCEEEEeecHHHHh-----CCCHHHHHHHHHHHHHhcC--CCeEEEEEec-------CCC
Confidence 344455444332 345667887766543332210 1122345667777777775 7666553332 234
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec--CCCCccCHHHHHHHHHHHHHhcCCCeEEEee-cCCcCcHHHHHHHHHHhcCceee
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG--DTIGVGTPGTMRLMLEDVLTVIPADRLAVHC-HDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~-Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
+++.+...++.+.++|+|.|-.. =+.+..+|+++..+-+.++.. +++-.=. -.+ ...++.-+++|++++=
T Consensus 129 ~~~~i~~a~ria~e~GaD~IKTsTG~~~~~at~~~v~~~~~~~~~~---v~ik~aGGikt----~~~~l~~~~~g~~riG 201 (203)
T cd00959 129 TDEEIIKACEIAIEAGADFIKTSTGFGPGGATVEDVKLMKEAVGGR---VGVKAAGGIRT----LEDALAMIEAGATRIG 201 (203)
T ss_pred CHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhCCC---ceEEEeCCCCC----HHHHHHHHHhChhhcc
Confidence 68899999999999999987765 222346777777665555521 2332211 012 3566777788888764
Q ss_pred e
Q psy12516 246 S 246 (327)
Q Consensus 246 ~ 246 (327)
+
T Consensus 202 ~ 202 (203)
T cd00959 202 T 202 (203)
T ss_pred C
Confidence 4
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.37 Score=45.40 Aligned_cols=143 Identities=15% Similarity=0.160 Sum_probs=82.5
Q ss_pred HHHHHHHHcCcCEEEecC-CccccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGD-TIGVGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~G~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...++|+|.|.+.| +.+.++|...++.+ +.+++..|.. ..+|.+.+. . +.+..+ +.|++.+
T Consensus 181 ~~~~~~ieaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~-~ilh~cg~~--~--~~~~~~~~~~~~~~ 255 (335)
T cd00717 181 EYLKAQIEAGAQAVQIFDSWAGALSPEDFEEFVLPYLKRIIEEVKKRLPGV-PVILFAKGA--G--GLLEDLAQLGADVV 255 (335)
T ss_pred HHHHHHHHhCCCEEEEeCcccccCCHHHHHHHHHHHHHHHHHHHHHhCCCC-CEEEEcCCC--H--HHHHHHHhcCCCEE
Confidence 567778889999999999 55899999876554 2333332222 346665532 2 556666 5687775
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
.. +. +.++++....+.+ ..+.-+++... +..+.+++.+..+++++.+...+-
T Consensus 256 s~-----d~---------~~dl~e~k~~~g~~~~i~Gni~p~~-------------l~~~~e~i~~~v~~~l~~~~~~~g 308 (335)
T cd00717 256 GL-----DW---------RVDLDEARKRLGPKVALQGNLDPAL-------------LYAPKEAIEKEVKRILKAFGGAPG 308 (335)
T ss_pred Ee-----CC---------CCCHHHHHHHhCCCeEEEeCCChhh-------------hcCCHHHHHHHHHHHHHHhCcCCC
Confidence 32 11 2355555544442 23333344311 112345667777788877655332
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
.+. +.||.....+++|.+..+.+.+.
T Consensus 309 fIl-----~~gc~i~~~tp~eNi~a~v~a~~ 334 (335)
T cd00717 309 HIF-----NLGHGILPDTPPENVKALVEAVH 334 (335)
T ss_pred cee-----ecCCcCCCCcCHHHHHHHHHHHh
Confidence 221 24565445688888888777654
|
This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). |
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.86 Score=43.71 Aligned_cols=133 Identities=16% Similarity=0.163 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC------EEE---ecCCCC------ccC
Q psy12516 135 LERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY------EIS---LGDTIG------VGT 198 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~------~i~---l~Dt~G------~~~ 198 (327)
++...+.++.+++.|++ +..-+. +|-.. +.++..+++..+.+++++ .|. +-...| .++
T Consensus 201 ~~~rl~~i~~a~~aG~~~v~~g~i--~Glge----~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~~~~ 274 (371)
T PRK09240 201 FEYRLETPERAGRAGIRKIGLGAL--LGLSD----WRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPASIVS 274 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeceEEE--ecCCc----cHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCCCCC
Confidence 44456678888889986 643333 33221 345555666555544432 332 333333 267
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee----ccccCCCCCCCCCC-------CCCccHH
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS----SIAGLGGCPYARGA-------SGNVATE 267 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~----s~~G~G~~p~~~g~-------~Gn~~~e 267 (327)
|.++.+++..+|-.+|+..|.+-+-....+. . ..+..|+..+.+ .++|+.. ... +..-+++
T Consensus 275 ~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lr--d--~~~~~~~~~~~ag~~~~~G~y~~----~~~~~~qf~~~~~r~~~ 346 (371)
T PRK09240 275 DKQLVQLICAFRLFLPDVEISLSTRESPEFR--D--NLIPLGITKMSAGSSTQPGGYAD----DHKELEQFEISDDRSVE 346 (371)
T ss_pred HHHHHHHHHHHHHHCcccccEEecCCCHHHH--H--HHHhhcceeeccCccCCCCCcCC----CCCCcCCccCCCCCCHH
Confidence 8899999999998889876666444322111 0 112233433332 2222222 000 0246889
Q ss_pred HHHHHHHhCCCCCC
Q psy12516 268 DLVYMLEGMGIETG 281 (327)
Q Consensus 268 ~~~~~l~~~g~~~~ 281 (327)
+.+.+|++.|+++.
T Consensus 347 ~~~~~i~~~g~~~~ 360 (371)
T PRK09240 347 EVAAALRAKGLQPV 360 (371)
T ss_pred HHHHHHHHCCCeec
Confidence 99999999998863
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.85 Score=39.99 Aligned_cols=70 Identities=16% Similarity=0.062 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHH---HHHHHHHHhcCce
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL---ANILTAMEFGISV 243 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~---an~l~a~~~G~~~ 243 (327)
+.++|....++.....+|.+.|+|.|..|...|.. .++++.+++.. +.|+.+ |-++ ..+..++++|+|.
T Consensus 130 ~~~~e~~~~~a~aa~~~G~~~i~Le~~sGa~~~v~-~e~i~~Vk~~~-~~Pv~v------GGGIrs~e~a~~l~~~GAD~ 201 (205)
T TIGR01769 130 YNKPEIAAAYCLAAKYFGMKWVYLEAGSGASYPVN-PETISLVKKAS-GIPLIV------GGGIRSPEIAYEIVLAGADA 201 (205)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEEcCCCCCCCCC-HHHHHHHHHhh-CCCEEE------eCCCCCHHHHHHHHHcCCCE
Confidence 46889999999999999999999999988854432 56777777766 345555 4443 3334444678876
Q ss_pred e
Q psy12516 244 F 244 (327)
Q Consensus 244 v 244 (327)
|
T Consensus 202 V 202 (205)
T TIGR01769 202 I 202 (205)
T ss_pred E
Confidence 5
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=95.77 E-value=1.1 Score=39.35 Aligned_cols=88 Identities=15% Similarity=0.111 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-C
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-A 215 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~ 215 (327)
.++++++.++..|+.+.+.+ .+.++ .+++.+.|++.+.+-...+...+... +.+..+++.+| +
T Consensus 109 ~~~~~~~~~~~~g~~~~v~v-----------~~~~e----~~~~~~~g~~~i~~t~~~~~~~~~~~-~~~~~l~~~~~~~ 172 (217)
T cd00331 109 QLKELYELARELGMEVLVEV-----------HDEEE----LERALALGAKIIGINNRDLKTFEVDL-NTTERLAPLIPKD 172 (217)
T ss_pred HHHHHHHHHHHcCCeEEEEE-----------CCHHH----HHHHHHcCCCEEEEeCCCccccCcCH-HHHHHHHHhCCCC
Confidence 35556666677788763211 12233 45566778888877766666555554 55677776653 3
Q ss_pred CeEEEeecCCcCcHH-HHHHHHHHhcCcee
Q psy12516 216 DRLAVHCHDTYGQAL-ANILTAMEFGISVF 244 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~-an~l~a~~~G~~~v 244 (327)
.++..= .|... .+.....++|++.|
T Consensus 173 ~pvia~----gGI~s~edi~~~~~~Ga~gv 198 (217)
T cd00331 173 VILVSE----SGISTPEDVKRLAEAGADAV 198 (217)
T ss_pred CEEEEE----cCCCCHHHHHHHHHcCCCEE
Confidence 444431 13332 66777778887754
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=95.74 E-value=1.2 Score=38.64 Aligned_cols=89 Identities=20% Similarity=0.234 Sum_probs=52.1
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecC-----CCCccCHHHHHHHHHHHHHhc
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGD-----TIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~D-----t~G~~~P~~~~~~~~~~~~~~ 213 (327)
.++++++++.|+++...+.. +....+.++.+.+.|+|.+.+.- +.+...+ +.++.+++.+
T Consensus 92 ~~~i~~~~~~g~~~~~~~~~-----------~~t~~~~~~~~~~~g~d~v~~~pg~~~~~~~~~~~----~~i~~l~~~~ 156 (206)
T TIGR03128 92 KGAVKAAKKHGKEVQVDLIN-----------VKDKVKRAKELKELGADYIGVHTGLDEQAKGQNPF----EDLQTILKLV 156 (206)
T ss_pred HHHHHHHHHcCCEEEEEecC-----------CCChHHHHHHHHHcCCCEEEEcCCcCcccCCCCCH----HHHHHHHHhc
Confidence 44577788889887643221 11233344455677999887641 2222233 3455556555
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+..++.+ +-|-...|.-..+++|++.+-.
T Consensus 157 ~~~~i~v----~GGI~~~n~~~~~~~Ga~~v~v 185 (206)
T TIGR03128 157 KEARVAV----AGGINLDTIPDVIKLGPDIVIV 185 (206)
T ss_pred CCCcEEE----ECCcCHHHHHHHHHcCCCEEEE
Confidence 5444432 3466677888889999987654
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.56 Score=42.94 Aligned_cols=145 Identities=19% Similarity=0.190 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--CCCChHHH---HHHHHHHHHcCcC--EEEecCCCCccCHHH---
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--GAVPPHNV---TRVATALYKMGCY--EISLGDTIGVGTPGT--- 201 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--~r~~~e~l---~~~~~~~~~~g~~--~i~l~Dt~G~~~P~~--- 201 (327)
+|.+...++++++|+..|+.|++-|...-|-++. ...+++.+ .+..+.+..-|+| .+.|....|.-.|..
T Consensus 112 eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~ea~~fv~~tgiD~LA~aiGn~HG~Yk~~~p~L 191 (286)
T COG0191 112 EENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEEALEFVERTGIDALAAAIGNVHGVYKPGNPKL 191 (286)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHHHHHHHhccCcceeeeeccccccCCCCCCCCC
Confidence 4457888999999999999999888875555552 12232222 2233334455677 456667777655311
Q ss_pred HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 202 MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
=-++++.+++..+ +||.+|.=. |........|++.|+..|...- -.-.+.+..+-.++.+.. ..
T Consensus 192 ~~~~L~~i~~~~~-~PlVlHGgS--Gip~~eI~~aI~~GV~KvNi~T-----------d~~~A~~~avr~~~~~~~--k~ 255 (286)
T COG0191 192 DFDRLKEIQEAVS-LPLVLHGGS--GIPDEEIREAIKLGVAKVNIDT-----------DLQLAFTAAVREYLAENP--KE 255 (286)
T ss_pred CHHHHHHHHHHhC-CCEEEeCCC--CCCHHHHHHHHHhCceEEeeCc-----------HHHHHHHHHHHHHHHhCc--cc
Confidence 1234666666656 677777655 8889999999999998764311 122455555555665532 35
Q ss_pred CChhhHHHHHH
Q psy12516 282 ADLTSLLRTGH 292 (327)
Q Consensus 282 ~d~~~l~~~~~ 292 (327)
+|..+++.-+.
T Consensus 256 ~DpR~~l~~a~ 266 (286)
T COG0191 256 YDPRKYLKPAI 266 (286)
T ss_pred CCHHHHHHHHH
Confidence 77766655443
|
|
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.98 Score=39.78 Aligned_cols=189 Identities=14% Similarity=0.172 Sum_probs=99.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l 100 (327)
...|+.++..+.+..++. +|-.-+.+-..+..+...++ .++. +-+.++ .|+ |..+++.-+.-.
T Consensus 13 p~~t~~~i~~lc~~A~~~------~~~avcv~p~~v~~a~~~l~~~~v~-v~tVig----FP~-----G~~~~~~K~~E~ 76 (211)
T TIGR00126 13 ADTTEEDIITLCAQAKTY------KFAAVCVNPSYVPLAKELLKGTEVR-ICTVVG----FPL-----GASTTDVKLYET 76 (211)
T ss_pred CCCCHHHHHHHHHHHHhh------CCcEEEeCHHHHHHHHHHcCCCCCe-EEEEeC----CCC-----CCCcHHHHHHHH
Confidence 345666666666655442 34444444444555555553 1222 222222 222 444444332222
Q ss_pred hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHH
Q psy12516 101 EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATAL 180 (327)
Q Consensus 101 ~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~ 180 (327)
+.+++.|.|.+.+........ .-..++..+.+..+++.++ |..+.+.+.. +..+.+.+...++..
T Consensus 77 -~~Av~~GAdEiDvv~n~g~l~-----~g~~~~v~~ei~~i~~~~~--g~~lKvIlE~-------~~L~~~ei~~a~~ia 141 (211)
T TIGR00126 77 -KEAIKYGADEVDMVINIGALK-----DGNEEVVYDDIRAVVEACA--GVLLKVIIET-------GLLTDEEIRKACEIC 141 (211)
T ss_pred -HHHHHcCCCEEEeecchHhhh-----CCcHHHHHHHHHHHHHHcC--CCeEEEEEec-------CCCCHHHHHHHHHHH
Confidence 346677777766554433211 1122344556666666664 6666554443 236668888999999
Q ss_pred HHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 181 YKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 181 ~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.++|+|-|--.. ..+-.+|+++..+-+.+.. ++.+..---.- ....+++-+++|++++=+|
T Consensus 142 ~eaGADfvKTsTGf~~~gat~~dv~~m~~~v~~-----~v~IKaaGGir-t~~~a~~~i~aGa~riGts 204 (211)
T TIGR00126 142 IDAGADFVKTSTGFGAGGATVEDVRLMRNTVGD-----TIGVKASGGVR-TAEDAIAMIEAGASRIGAS 204 (211)
T ss_pred HHhCCCEEEeCCCCCCCCCCHHHHHHHHHHhcc-----CCeEEEeCCCC-CHHHHHHHHHHhhHHhCcc
Confidence 999999775431 1234677777666555443 22332221101 2356677778888877554
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.3 Score=43.58 Aligned_cols=153 Identities=8% Similarity=0.143 Sum_probs=90.7
Q ss_pred CcCEEEecCCcc-ccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTIG-VGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~G-~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
+++.|.|.+-+- .++|..+.++++.+++.++- .++.+-++- ..-....+..+ ++|+.+|..++..+..
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np--~~l~~e~l~~lk~~G~~risiGvqS~~~----- 174 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDP--RYITKDVIDALRDEGFNRLSFGVQDFNK----- 174 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEecc--CcCCHHHHHHHHHcCCCEEEEcCCCCCH-----
Confidence 678899987554 45799999999999988652 233333321 11122334444 4666666655554432
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~ 164 (327)
++...+.+ ..+ .+.+.+.++.+++.|+. +...++ +|-|.
T Consensus 175 ---------~~l~~l~r-------------------------~~~----~~~~~~ai~~l~~~G~~~v~~dli--~GlPg 214 (455)
T TIGR00538 175 ---------EVQQAVNR-------------------------IQP----EEMIFELMNHAREAGFTSINIDLI--YGLPK 214 (455)
T ss_pred ---------HHHHHhCC-------------------------CCC----HHHHHHHHHHHHhcCCCcEEEeEE--eeCCC
Confidence 11111110 011 34567778888899985 444443 45453
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCC---------------CCccCHHHHHHHHHHHHHhc
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDT---------------IGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt---------------~G~~~P~~~~~~~~~~~~~~ 213 (327)
-+.+.+.+..+.+.+.+++.|.+-.- ....++++..+++..+.+.+
T Consensus 215 ---qt~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~L 275 (455)
T TIGR00538 215 ---QTKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRKIPEAALPSAEEKLDILQETIAFL 275 (455)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhcccccCCCCHHHHHHHHHHHHHHH
Confidence 47888889999999999987655432 11235667666666665543
|
This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein. |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.067 Score=47.71 Aligned_cols=128 Identities=16% Similarity=0.149 Sum_probs=86.1
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccC-CCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh-c-C
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGC-PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV-I-P 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~-~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~-~ 214 (327)
+++.++.||++|+.+. +|. .++.-+....+.++.+.+.++|.+.|.+.|-+-.+.+++-.++++.+++. + .
T Consensus 43 l~eki~la~~~~V~v~------~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~IEiS~G~~~i~~~~~~rlI~~~~~~g~~v 116 (237)
T TIGR03849 43 VKEKIEMYKDYGIKVY------PGGTLFEIAHSKGKFDEYLNECDELGFEAVEISDGSMEISLEERCNLIERAKDNGFMV 116 (237)
T ss_pred HHHHHHHHHHcCCeEe------CCccHHHHHHHhhhHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCeE
Confidence 7778999999999985 332 12222344677788889999999999999999999999999999999965 2 1
Q ss_pred CCeEEEeecC-----CcCcHHHHHHHHHHhcCcee--eecc----ccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 215 ADRLAVHCHD-----TYGQALANILTAMEFGISVF--DSSI----AGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 215 ~~~l~~H~Hn-----~~g~a~an~l~a~~~G~~~v--d~s~----~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
-.+++..... +...-+-..-..++|||++| ++-= -|+-+ ..|+.-...+-..+++.+
T Consensus 117 ~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~------~~g~~r~d~v~~i~~~l~ 184 (237)
T TIGR03849 117 LSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFD------EKGNVKEDELDVLAENVD 184 (237)
T ss_pred eccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeC------CCCCCchHHHHHHHhhCC
Confidence 2245554432 11223445566799999985 5522 24444 567777665555555433
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.34 Score=46.02 Aligned_cols=74 Identities=16% Similarity=0.160 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~ 215 (327)
+.+.+.+++|++.|.++.+.+.... ..-..+.+.+..+.+.+.|+|.|.++|- -++..+++..|+
T Consensus 49 ~~l~e~i~~ah~~gkk~~V~~N~~~-----~~~~~~~~~~~l~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~ 113 (347)
T COG0826 49 EDLAEAVELAHSAGKKVYVAVNTLL-----HNDELETLERYLDRLVELGVDAVIVADP----------GLIMLARERGPD 113 (347)
T ss_pred HHHHHHHHHHHHcCCeEEEEecccc-----ccchhhHHHHHHHHHHHcCCCEEEEcCH----------HHHHHHHHhCCC
Confidence 3478889999999999876655422 2234456789999999999999999993 367788888898
Q ss_pred CeEEEeecC
Q psy12516 216 DRLAVHCHD 224 (327)
Q Consensus 216 ~~l~~H~Hn 224 (327)
.|+++=++-
T Consensus 114 l~ih~S~q~ 122 (347)
T COG0826 114 LPIHVSTQA 122 (347)
T ss_pred CcEEEeeeE
Confidence 887775543
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=95.53 E-value=2.3 Score=40.39 Aligned_cols=130 Identities=8% Similarity=0.075 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc--CcCEEEe------cCC-CC---ccCHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM--GCYEISL------GDT-IG---VGTPGTM 202 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~--g~~~i~l------~Dt-~G---~~~P~~~ 202 (327)
++...+.++.+++.|+++...+. +|- --+.++..+....+.+. .++.|.+ +.| .+ .++|.+.
T Consensus 170 ~~~rl~~i~~a~~~G~~v~sg~i--~Gl----gEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl~~~~~~~~~e~ 243 (345)
T PRK15108 170 YQERLDTLEKVRDAGIKVCSGGI--VGL----GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDF 243 (345)
T ss_pred HHHHHHHHHHHHHcCCceeeEEE--EeC----CCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCCCCCCCCCHHHH
Confidence 55667788899999998764433 331 13667888888888888 4454432 344 12 3578899
Q ss_pred HHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 203 RLMLEDVLTVIPADRLAVHCHD-TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
.+.+...|-.+|+..+.+-.-- ..+ --....++.+||+-+ +. |+ -+- ...| .+.++.+.++++.|+.+
T Consensus 244 lr~iAi~Rl~lp~~~i~i~~g~~~~~--~~~~~~~l~~Gan~~---~~--g~-~~l-tt~g-~~~~~~~~~i~~~g~~~ 312 (345)
T PRK15108 244 IRTIAVARIMMPTSYVRLSAGREQMN--EQTQAMCFMAGANSI---FY--GC-KLL-TTPN-PEEDKDLQLFRKLGLNP 312 (345)
T ss_pred HHHHHHHHHHCCCceeeecccHhHhC--hhhHHHHHHcCCcEE---EE--CC-ccc-cCCC-CCHHHHHHHHHHcCCCc
Confidence 9999988877887433321111 111 124688999999987 22 22 100 1234 68899999999998875
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.64 Score=46.42 Aligned_cols=69 Identities=10% Similarity=0.031 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV 212 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~ 212 (327)
.++..+.++.+++.|+.+.+.++ +|.|.+ +.+.+.+..+.+.+.+++.+.+ ..++|.-=..++..+++.
T Consensus 322 ~~~~~~ai~~l~~~Gi~~~~~~I--~G~P~e---t~e~~~~t~~~~~~l~~~~~~~----~~~tP~PGT~l~~~~~~~ 390 (497)
T TIGR02026 322 TSTNKEAIRLLRQHNILSEAQFI--TGFENE---TDETFEETYRQLLDWDPDQANW----LMYTPWPFTSLFGELSDR 390 (497)
T ss_pred HHHHHHHHHHHHHCCCcEEEEEE--EECCCC---CHHHHHHHHHHHHHcCCCceEE----EEecCCCCcHHHHHHHhh
Confidence 34567788999999998765544 565653 6788888889999999887765 357776555666666553
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >PRK13347 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.50 E-value=1.5 Score=43.13 Aligned_cols=132 Identities=11% Similarity=0.119 Sum_probs=82.3
Q ss_pred CcCEEEecCCcc-ccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTIG-VGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~G-~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
++..|.|.+-+- .++|..+.++++.+++.++- .++.+-+ +...-....+..+ ++|+.++..++..+..
T Consensus 103 ~v~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~--~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~----- 175 (453)
T PRK13347 103 RVSQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEI--DPRTVTAEMLQALAALGFNRASFGVQDFDP----- 175 (453)
T ss_pred eEEEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEe--ccccCCHHHHHHHHHcCCCEEEECCCCCCH-----
Confidence 567888887553 36799999999999988652 2333322 2222233445555 5677777766654432
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~ 164 (327)
++...+.+ ..+ .+.+.+.++.+++.|+. +.+.++ +|-|.
T Consensus 176 ---------~vl~~l~R-------------------------~~~----~~~~~~ai~~lr~~G~~~v~~dli--~GlPg 215 (453)
T PRK13347 176 ---------QVQKAINR-------------------------IQP----EEMVARAVELLRAAGFESINFDLI--YGLPH 215 (453)
T ss_pred ---------HHHHHhCC-------------------------CCC----HHHHHHHHHHHHhcCCCcEEEeEE--EeCCC
Confidence 22211111 011 44567778888999986 555444 45553
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecC
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
-+.+.+.+..+.+.+.+++.|.+-.
T Consensus 216 ---qt~e~~~~tl~~~~~l~p~~i~~y~ 240 (453)
T PRK13347 216 ---QTVESFRETLDKVIALSPDRIAVFG 240 (453)
T ss_pred ---CCHHHHHHHHHHHHhcCCCEEEEec
Confidence 4788889999999999999877643
|
|
| >COG1891 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.2 Score=42.36 Aligned_cols=74 Identities=19% Similarity=0.201 Sum_probs=51.8
Q ss_pred HHHHHHHHcCcCEEEecCCc----cccCHHHHHHHHHHHHhhcCC-CeeEEE---ecCccchHHHHHHHHHHcCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLGDTI----GVGTPGTMRLMLEDVLTVIPA-DRLAVH---CHDTYGQALANILTAMEFGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~----G~~~p~~~~~~~~~~~~~~~~-~~~~~H---~h~~~g~~~~~~~~a~~aG~~~id~ 73 (327)
+-+..+++-|+|+|-.+... |...||.+|++- +..|. .++..- .-.-.|++.-.++-|.-+|+++|.+
T Consensus 11 eEA~eAieGGAdIiDVKNP~EGSLGANFPWvIr~i~----Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~GaDYiKV 86 (235)
T COG1891 11 EEAIEAIEGGADIIDVKNPAEGSLGANFPWVIREIR----EVVPEDQEVSATVGDVPYKPGTASLAALGAAVAGADYIKV 86 (235)
T ss_pred HHHHHHhhCCCceEeccCcccCcccCCChHHHHHHH----HhCccceeeeeeecCCCCCCchHHHHHHHhHhhCCceEEE
Confidence 34566778899999999876 788899877644 44443 334443 3345677666667777899999999
Q ss_pred cccCCC
Q psy12516 74 SIAGLG 79 (327)
Q Consensus 74 ~~~glg 79 (327)
++-|.-
T Consensus 87 GLYg~k 92 (235)
T COG1891 87 GLYGTK 92 (235)
T ss_pred eecccc
Confidence 887654
|
|
| >PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.78 Score=43.23 Aligned_cols=146 Identities=15% Similarity=0.195 Sum_probs=83.6
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHH----HHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLE----DVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~----~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~ 73 (327)
++++...++|+|.|.+.|+.+ ..+|...++++. .+.+.+......+|+.-+. ...+..+ +.|++.+..
T Consensus 184 ~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~~----~~~l~~~~~~g~d~~~~ 259 (339)
T PRK06252 184 EYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGDL----TSILEEMADCGFDGISI 259 (339)
T ss_pred HHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCCc----hHHHHHHHhcCCCeecc
Confidence 567788899999999999874 789998776642 3333332114567776443 2344444 578877541
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhh-hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLE-GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~-~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
.. ..++++....+. +..+.-|+|....+ ++.+.+++.+..+++++ .|..+
T Consensus 260 -----d~---------~~dl~~~~~~~g~~~~i~Gnidp~~~l-----------~~gt~eeI~~~v~~~l~----~g~~I 310 (339)
T PRK06252 260 -----DE---------KVDVKTAKENVGDRAALIGNVSTSFTL-----------LNGTPEKVKAEAKKCLE----DGVDI 310 (339)
T ss_pred -----CC---------CCCHHHHHHHhCCCeEEEeccCcHHHh-----------cCCCHHHHHHHHHHHHH----cCCCE
Confidence 11 235555554442 23344445442221 12344555555555554 34332
Q ss_pred EEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc
Q psy12516 153 RGYISCVVGCPYEGAVPPHNVTRVATALYKMGC 185 (327)
Q Consensus 153 ~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~ 185 (327)
. ..||-....+++|.+..+.+.+.++|.
T Consensus 311 l-----~~gcgi~~~tp~enl~a~v~a~~~~~~ 338 (339)
T PRK06252 311 L-----APGCGIAPKTPLENIKAMVEARKEYYA 338 (339)
T ss_pred E-----cCCCCCCCCCCHHHHHHHHHHHHHhcc
Confidence 1 235554446788999988888887664
|
|
| >PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=95.42 E-value=2 Score=42.46 Aligned_cols=164 Identities=12% Similarity=0.172 Sum_probs=92.9
Q ss_pred cccCcchhhhhhhhhH--HHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 105 MQCGVKEIAVFASASE--MFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 105 ~~~Gid~i~l~~~~sd--~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
.+.|++.+.++.-+.+ .+.+.--.. +...++.-.+.++.|++.|++ |..- ..+|-++ .+ ++...++..+.
T Consensus 187 keaGv~~~~l~qETY~~ety~~~hp~g-~k~~y~~Rl~t~~rA~~aGi~~Vg~G--~L~GLge-~~---~E~~~l~~hl~ 259 (469)
T PRK09613 187 KEAGIGTYQLFQETYHKPTYEKMHPSG-PKSDYDWRLTAMDRAMEAGIDDVGIG--VLFGLYD-YK---FEVLGLLMHAE 259 (469)
T ss_pred HHcCCCEEEeccccCCHHHHHhcCCCC-CCCCHHHHHHHHHHHHHcCCCeeCeE--EEEcCCC-CH---HHHHHHHHHHH
Confidence 5677777666544422 222211111 111244456678899999997 6533 2344332 22 22233333332
Q ss_pred H------cCcCEEEec------CC-C----CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 182 K------MGCYEISLG------DT-I----GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 182 ~------~g~~~i~l~------Dt-~----G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
. .|++.|.++ +| . -.+++.++.+++..+|-.+|...|.+-++....+- -..+..|+.++
T Consensus 260 ~L~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~r----~~~~~~gvt~~ 335 (469)
T PRK09613 260 HLEERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAELR----REVLELGVSQI 335 (469)
T ss_pred HHHHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHHH----HHHHhhcceee
Confidence 2 256655433 33 1 23677899999999998889888888777765432 34566788888
Q ss_pred e----eccccCCCC-------CCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 245 D----SSIAGLGGC-------PYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 245 d----~s~~G~G~~-------p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
+ ++++|..+- -|.- .=+-++++++..|.+.|+.+.
T Consensus 336 sags~t~~ggy~~~~~~~~~~QF~~--~d~r~~~ev~~~l~~~g~~p~ 381 (469)
T PRK09613 336 SAGSRTGVGGYSEEEEEEEKAQFEL--GDHRSLDEVIRELCEMGYIPS 381 (469)
T ss_pred cccccCCCCCcCCCCCCCCCCCccC--CCCCCHHHHHHHHHHCCCeEE
Confidence 5 344444430 0111 235688899998888887653
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.15 Score=50.58 Aligned_cols=73 Identities=16% Similarity=0.160 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+...+.++.+.+.|++.|.+ |+.- ..|..+.++++.+++.+|++++.. ..+.-...+..++++|++.|++++.
T Consensus 224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCc
Confidence 46678889999999999887 6665 777999999999999999888777 4566677888899999999997555
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases | Back alignment and domain information |
|---|
Probab=95.30 E-value=0.87 Score=42.57 Aligned_cols=144 Identities=20% Similarity=0.307 Sum_probs=85.4
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCc
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGIS 69 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~ 69 (327)
++++.+.+.|++.|.+.|..+ .++|...++++ +.+++. +.++.+|...+.+ +.+..+ +.|++
T Consensus 172 ~~~~~~~~~G~d~i~i~d~~~~~~~isp~~f~e~~~p~~k~i~~~i~~~--g~~~~lH~cG~~~----~~~~~l~~~~~d 245 (330)
T cd03465 172 RYADALIEAGADGIYISDPWASSSILSPEDFKEFSLPYLKKVFDAIKAL--GGPVIHHNCGDTA----PILELMADLGAD 245 (330)
T ss_pred HHHHHHHHhCCCEEEEeCCccccCCCCHHHHHHHhhHHHHHHHHHHHHc--CCceEEEECCCch----hHHHHHHHhCCC
Confidence 567788889999999999763 34787765543 233322 3578888887664 445555 68887
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.+..... .+++++...+.+ ..+.-|+|...++ .+-+.++..+.++++++.....
T Consensus 246 ~~~~d~~--------------~dl~~~~~~~g~~~~i~G~id~~~~l-----------~~gt~eei~~~v~~~l~~~~~~ 300 (330)
T cd03465 246 VFSIDVT--------------VDLAEAKKKVGDKACLMGNLDPIDVL-----------LNGSPEEIKEEVKELLEKLLKG 300 (330)
T ss_pred eEeeccc--------------CCHHHHHHHhCCceEEEeCcChHHhh-----------cCCCHHHHHHHHHHHHHHHhCC
Confidence 7663211 145555444432 3333445443111 2345667778888888887653
Q ss_pred -CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 149 -GIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 149 -Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+-.+- ..+|......+++.+..+++.+.
T Consensus 301 ~~~~il-----~~gc~i~~~~p~enl~a~v~a~~ 329 (330)
T cd03465 301 GGGYIL-----SSGCEIPPDTPIENIKAMIDAVR 329 (330)
T ss_pred CCCEEE-----eCCCCCCCCCCHHHHHHHHHHHh
Confidence 32221 23444444577888887777654
|
Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane. |
| >TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase | Back alignment and domain information |
|---|
Probab=95.28 E-value=1.2 Score=42.56 Aligned_cols=129 Identities=12% Similarity=0.165 Sum_probs=76.1
Q ss_pred cCEEEecCCc-cccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCC
Q psy12516 12 CYEISLGDTI-GVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 12 ~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~ 86 (327)
++.|.+.+-+ -.+++.++.++++.+++.++ ..++.+-++- +.-....+..+ ++|+.+|..++..+..
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np--~~lt~e~l~~l~~~Gv~risiGvqS~~~------ 123 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANP--ELITAEWCKGLKGAGINRLSLGVQSFRD------ 123 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCC--CCCCHHHHHHHHHcCCCEEEEecccCCh------
Confidence 6788888655 35678899999999987764 1344443322 21122334444 5677777766654432
Q ss_pred ccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCC
Q psy12516 87 ASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYE 165 (327)
Q Consensus 87 ~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~ 165 (327)
++...+ +-..+ .+.+.+.++.+++.|+. +.+.++ +|-|.
T Consensus 124 --------~~l~~l-------------------------gR~~~----~~~~~~ai~~l~~~G~~~v~~dli--~GlPg- 163 (360)
T TIGR00539 124 --------DKLLFL-------------------------GRQHS----AKNIAPAIETALKSGIENISLDLM--YGLPL- 163 (360)
T ss_pred --------HHHHHh-------------------------CCCCC----HHHHHHHHHHHHHcCCCeEEEecc--CCCCC-
Confidence 111111 00011 44566678888888885 444333 45453
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+..+.+.+.+++.|.+
T Consensus 164 --qt~~~~~~~l~~~~~l~~~~is~ 186 (360)
T TIGR00539 164 --QTLNSLKEELKLAKELPINHLSA 186 (360)
T ss_pred --CCHHHHHHHHHHHHccCCCEEEe
Confidence 46777888888888888886654
|
Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo. |
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.1 Score=42.57 Aligned_cols=130 Identities=9% Similarity=0.117 Sum_probs=77.1
Q ss_pred CcCEEEecC-CccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCc
Q psy12516 11 GCYEISLGD-TIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGA 87 (327)
Q Consensus 11 g~~~i~~~D-t~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~ 87 (327)
+++.|+|.+ |--.++|..+.++++.+++.++ +.++.+-++-+. + ....++.+ ++|+.+|..++..+..
T Consensus 51 ~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~~-~-~~e~l~~l~~~GvnRiSiGvQS~~~------- 121 (350)
T PRK08446 51 KIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPNS-A-TKAWLKGMKNLGVNRISFGVQSFNE------- 121 (350)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCCC-C-CHHHHHHHHHcCCCEEEEecccCCH-------
Confidence 678999998 4467899999999999988753 244444443221 1 23344444 6788888777665542
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCC
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEG 166 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~ 166 (327)
++...+ +..+ + .+.+.+.++.+++.|+. +.+.+ ++|-|.
T Consensus 122 -------~~L~~l---gR~~----------------------~----~~~~~~ai~~lr~~g~~~v~iDl--i~GlPg-- 161 (350)
T PRK08446 122 -------DKLKFL---GRIH----------------------S----QKQIIKAIENAKKAGFENISIDL--IYDTPL-- 161 (350)
T ss_pred -------HHHHHc---CCCC----------------------C----HHHHHHHHHHHHHcCCCEEEEEe--ecCCCC--
Confidence 111111 0000 1 34456667777777775 44333 344443
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+..+.+.+.+++.|.+
T Consensus 162 -qt~~~~~~~l~~~~~l~~~~is~ 184 (350)
T PRK08446 162 -DNKKLLKEELKLAKELPINHLSA 184 (350)
T ss_pred -CCHHHHHHHHHHHHhcCCCEEEe
Confidence 35667777777777777776543
|
|
| >PRK05660 HemN family oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=1.7 Score=41.84 Aligned_cols=130 Identities=12% Similarity=0.126 Sum_probs=83.9
Q ss_pred cCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCC
Q psy12516 10 MGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYA 84 (327)
Q Consensus 10 ~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~ 84 (327)
.+++.|.|..-+ -.+++..+.++++.+++.+|. .++.+-++ .+.-....+..+ ++|+++|..++..+..
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~n--p~~l~~e~l~~Lk~~Gv~risiGvqS~~~---- 130 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEAN--PGTVEADRFVGYQRAGVNRISIGVQSFSE---- 130 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeC--cCcCCHHHHHHHHHcCCCEEEeccCcCCH----
Confidence 467889998744 556789999999999998763 34444443 333334555555 6888888877765542
Q ss_pred CCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE-EEEEeeeccCC
Q psy12516 85 RGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV-RGYISCVVGCP 163 (327)
Q Consensus 85 ~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v-~~~l~~~~g~~ 163 (327)
++...+.+ . -+ .+.+.+.++.+++.|+.. .+.+ ++|-|
T Consensus 131 ----------~~L~~l~r---~----------------------~~----~~~~~~ai~~~~~~G~~~v~~dl--i~Glp 169 (378)
T PRK05660 131 ----------EKLKRLGR---I----------------------HG----PDEAKRAAKLAQGLGLRSFNLDL--MHGLP 169 (378)
T ss_pred ----------HHHHHhCC---C----------------------CC----HHHHHHHHHHHHHcCCCeEEEEe--ecCCC
Confidence 22211110 0 01 445677788889999863 4334 45555
Q ss_pred CCCCCChHHHHHHHHHHHHcCcCEEE
Q psy12516 164 YEGAVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 164 ~~~r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
. -+.+.+.+..+.+.+.+++.|.
T Consensus 170 g---qt~~~~~~~l~~~~~l~p~~is 192 (378)
T PRK05660 170 D---QSLEEALDDLRQAIALNPPHLS 192 (378)
T ss_pred C---CCHHHHHHHHHHHHhcCCCeEE
Confidence 4 4788888999999999998765
|
|
| >PRK07379 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=1 Score=43.63 Aligned_cols=130 Identities=11% Similarity=0.097 Sum_probs=80.1
Q ss_pred CcCEEEecC-CccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGD-TIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~D-t~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
+++.|.|.+ |--.++|..+.++++.+++.++- .++.+-++ .+.-....+..+ ++|+.++..++..+..
T Consensus 66 ~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~--P~~lt~e~l~~l~~~GvnrislGvQS~~d----- 138 (400)
T PRK07379 66 PLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEID--PGTFDLEQLQGYRSLGVNRVSLGVQAFQD----- 138 (400)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeC--CCcCCHHHHHHHHHCCCCEEEEEcccCCH-----
Confidence 477999987 55667899999999999988752 24444332 211122344444 5677777765553331
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~ 164 (327)
+++..+.+ +-+ .+.+.+.++.+++.|+. +.+.++ +|-|.
T Consensus 139 ---------~~L~~l~R-------------------------~~~----~~~~~~ai~~l~~~G~~~v~~dlI--~GlPg 178 (400)
T PRK07379 139 ---------ELLALCGR-------------------------SHR----VKDIFAAVDLIHQAGIENFSLDLI--SGLPH 178 (400)
T ss_pred ---------HHHHHhCC-------------------------CCC----HHHHHHHHHHHHHcCCCeEEEEee--cCCCC
Confidence 22211111 111 34466678888888887 554444 56564
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+-.+.+.+++++.|.+
T Consensus 179 ---qt~e~~~~tl~~~~~l~p~~is~ 201 (400)
T PRK07379 179 ---QTLEDWQASLEAAIALNPTHLSC 201 (400)
T ss_pred ---CCHHHHHHHHHHHHcCCCCEEEE
Confidence 36778888888888888887654
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=1.4 Score=42.69 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=53.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
+.++.+.++|+|.|.+ |++. ..+..+.++++.+++.+|+.++-+.--.+. ..+..++++|++.|.+++
T Consensus 156 ~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T~----e~a~~l~~aGaD~I~vG~ 223 (404)
T PRK06843 156 ERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVTK----EAALDLISVGADCLKVGI 223 (404)
T ss_pred HHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCCH----HHHHHHHHcCCCEEEECC
Confidence 5788999999999988 7764 235778888999999999877766666554 567888899999999533
|
|
| >PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.82 Score=43.05 Aligned_cols=145 Identities=17% Similarity=0.236 Sum_probs=79.9
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHH--------HHHHHhhcCCC-eeEEEecCccchHHHHHHHHH-HcCCcE
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLM--------LEDVLTVIPAD-RLAVHCHDTYGQALANILTAM-EFGISV 70 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~--------~~~~~~~~~~~-~~~~H~h~~~g~~~~~~~~a~-~aG~~~ 70 (327)
++++.+.+.|+|.|.+.|.. +..+|...+++ ++.+++.. . ++.+|.+-+... ++.-+ +.|++.
T Consensus 186 ~~~~~~~~~G~d~i~~~d~~~~~isp~~f~e~~~P~~k~i~~~i~~~g--~~~~~lH~cG~~~~----~~~~l~~~g~d~ 259 (343)
T PF01208_consen 186 EYAKAQIEAGADGIFIFDSSGSLISPEMFEEFILPYLKKIIDAIKEAG--KDPVILHICGNTTP----ILDDLADLGADV 259 (343)
T ss_dssp HHHHHHHHTT-SEEEEEETTGGGS-HHHHHHHTHHHHHHHHHHHHHHE--TE-EEEEETTHG-G----GHHHHHTSS-SE
T ss_pred HHHHHHHHhCCCcccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhC--CCceEEEECCchHH----HHHHHHhcCCCE
Confidence 56788889999999999966 67778875544 34444433 3 788898877643 33333 689888
Q ss_pred EEecccCCCCCCCCCCccCCCcHHHHHHHh-hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHH-HHHc
Q psy12516 71 FDSSIAGLGGCPYARGASGNVATEDLVYML-EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVST-ALTN 148 (327)
Q Consensus 71 id~~~~glg~~p~~~~~~gn~~~e~v~~~l-~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~-a~~~ 148 (327)
+.. +. ..++.+....+ .+..+.-|++...++. .+++++.+.++++++. ....
T Consensus 260 ~~~-----~~---------~~~~~~~~~~~~~~~~l~Gni~~~~~l~------------gt~eei~~~v~~~i~~~~~~~ 313 (343)
T PF01208_consen 260 LSV-----DE---------KVDLAEAKRKLGDKIVLMGNIDPVSLLF------------GTPEEIEEEVKRLIEEGLAGG 313 (343)
T ss_dssp EEE------T---------TS-HHHHHHHHTTSSEEEEEB-G-GGGG------------S-HHHHHHHHHHHHHHTHCTS
T ss_pred EEE-----cC---------CCCHHHHHHHhCCCeEEECCCCcccccc------------CCHHHHHHHHHHHHHHhcCCC
Confidence 774 11 23454444433 2344445566644443 2345556667777773 3333
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
|..+- ..||..-..+++|.+..+.+.+.++
T Consensus 314 ~gfIl-----~~gc~ip~~~p~eni~a~~~a~~eY 343 (343)
T PF01208_consen 314 GGFIL-----SPGCGIPPDTPPENIKAMVEAVKEY 343 (343)
T ss_dssp SSEEB-----EBSS---TTS-HHHHHHHHHHHHHH
T ss_pred CCEEE-----eCCCcCCCCcCHHHHHHHHHHHHhC
Confidence 33332 2445444568889999888887653
|
URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). The sequence of URO-D has been well conserved throughout evolution. The best conserved region is located in the N-terminal section; it contains a perfectly conserved hexapeptide. There are two arginine residues in this hexapeptide which could be involved in the binding, via salt bridges, to the carboxyl groups of the propionate side chains of the substrate. The crystal structure of human uroporphyrinogen decarboxylase shows it as comprised of a single domain containing a (beta/alpha)8-barrel with a deep active site cleft formed by loops at the C-terminal ends of the barrel strands. URO-D is a dimer in solution. Dimerisation juxtaposes the active site clefts of the monomers, suggesting a functionally important interaction between the catalytic centres [].; GO: 0004853 uroporphyrinogen decarboxylase activity, 0006779 porphyrin-containing compound biosynthetic process; PDB: 4EXQ_A 2INF_C 1J93_A 3GW0_A 1R3Q_A 1JPH_A 1JPI_A 3GVR_A 3GVW_A 3GVV_A .... |
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=94.82 E-value=3.7 Score=39.30 Aligned_cols=77 Identities=9% Similarity=0.103 Sum_probs=45.8
Q ss_pred CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee----ccccCCCCCCCCCCCC--------
Q psy12516 195 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS----SIAGLGGCPYARGASG-------- 262 (327)
Q Consensus 195 G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~----s~~G~G~~p~~~g~~G-------- 262 (327)
..++|.++.+++..+|-.+|...|-+-+-...-+. -..+..|+..+.+ .++|+-. ..|
T Consensus 270 ~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lr----d~~~~~~~~~~~a~~~~~~G~y~~------~~~~~~qf~~~ 339 (366)
T TIGR02351 270 VIVTDRELVQIICAYRLFDPFVEISLSTRESKKFR----DNVIPLGITKMSAGSSTEPGGYSS------EKKGLEQFEIS 339 (366)
T ss_pred CcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHH----HHHHhhcceeeccCcccCCCCcCC------CCCCcCcccCC
Confidence 45778999999999998889877766444321111 1112334333322 1222221 123
Q ss_pred -CccHHHHHHHHHhCCCCCC
Q psy12516 263 -NVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 263 -n~~~e~~~~~l~~~g~~~~ 281 (327)
+-++++++.++++.|+.+-
T Consensus 340 d~r~~~~~~~~i~~~g~~~~ 359 (366)
T TIGR02351 340 DERSVAEVEEDLRSKGLQPV 359 (366)
T ss_pred CCCCHHHHHHHHHHCCCeec
Confidence 3788999999999988764
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=94.81 E-value=1.1 Score=50.28 Aligned_cols=111 Identities=16% Similarity=0.231 Sum_probs=76.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCE--EEecCCCCccC-
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYE--ISLGDTIGVGT- 198 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~~- 198 (327)
+.+|+++..++++++||..|+.|++-+...-|.++. ..++|++..++++ +.|+|. +.+.-..|.-.
T Consensus 1204 ~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~---~TgvD~LAvaiGt~HG~Y~~ 1280 (1378)
T PLN02858 1204 SFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFID---ETGIDALAVCIGNVHGKYPA 1280 (1378)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHH---hcCCcEEeeecccccccCCC
Confidence 345668899999999999999999888775444432 0346665555444 568885 55555666542
Q ss_pred --HHHHHHHHHHHHHhcC--CCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 199 --PGTMRLMLEDVLTVIP--ADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 --P~~~~~~~~~~~~~~~--~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
|.==.++++.+++..+ ++||.+|.=. |..-.....|++.|+..|+
T Consensus 1281 ~~p~l~~~~l~~i~~~~~~~~vpLVlHGgS--G~~~~~~~~ai~~Gi~KiN 1329 (1378)
T PLN02858 1281 SGPNLRLDLLKELRALSSKKGVLLVLHGAS--GLPESLIKECIENGVRKFN 1329 (1378)
T ss_pred CCCccCHHHHHHHHHHhcCCCCcEEEeCCC--CCCHHHHHHHHHcCCeEEE
Confidence 4444457788888773 5788877654 5557888999999988764
|
|
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=94.68 E-value=3.9 Score=38.41 Aligned_cols=131 Identities=12% Similarity=0.015 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-----cCEEEe------cCCC----CccCHHH
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-----CYEISL------GDTI----GVGTPGT 201 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-----~~~i~l------~Dt~----G~~~P~~ 201 (327)
...+.++.+++.|+.+...+.. | .- =++++..+....+.+.. ++.+.+ +.|- ...++.+
T Consensus 150 ~~l~~i~~a~~~Gi~~~s~~i~--G-~g---Et~ed~~~~l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e 223 (322)
T TIGR03550 150 VRLETIEDAGRLKIPFTTGILI--G-IG---ETREERAESLLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEE 223 (322)
T ss_pred HHHHHHHHHHHcCCCccceeeE--e-CC---CCHHHHHHHHHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHH
Confidence 4577899999999998766654 4 12 25566666666665543 432221 1332 2366788
Q ss_pred HHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCCC
Q psy12516 202 MRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGN-VATEDLVYMLEGMGIE 279 (327)
Q Consensus 202 ~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn-~~~e~~~~~l~~~g~~ 279 (327)
..++++..|=.+| ...|..-. .++ ......++.+||+-+++|+.=.|+ -.+ ..|. .+.+++..+++..|+.
T Consensus 224 ~lr~iAv~Rl~l~~~~~I~~~~--~l~--~~~~~~~L~~Gand~~gt~~~~~~-~~~--~~~~~~~~~~~~~~i~~~g~~ 296 (322)
T TIGR03550 224 MLRTVAVARLILPPDISIQVPP--NLN--REDYRLLLDAGIDDWGGVSPVTPD-HVN--PEAPWPEIDELARATEEAGFT 296 (322)
T ss_pred HHHHHHHHHHHcCCCCeeecCC--ccC--hHHHHHHHhcCCccccCcccCchh-hcC--CCCCCCCHHHHHHHHHHcCCC
Confidence 8888888777674 33333332 333 113678899999999988642233 001 1222 4789999999998876
Q ss_pred C
Q psy12516 280 T 280 (327)
Q Consensus 280 ~ 280 (327)
.
T Consensus 297 p 297 (322)
T TIGR03550 297 L 297 (322)
T ss_pred c
Confidence 5
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.55 E-value=1 Score=40.95 Aligned_cols=167 Identities=18% Similarity=0.194 Sum_probs=93.3
Q ss_pred HHHHHHHHcCcCEEEec----CCc---------------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHH
Q psy12516 2 KVASALYKMGCYEISLG----DTI---------------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 62 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~----Dt~---------------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~ 62 (327)
++++.+.+.|+|.|.|. |.. +..|+..+-++++.+++..+.+|+.+=+=-+.
T Consensus 35 e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Np--------- 105 (265)
T COG0159 35 EIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNP--------- 105 (265)
T ss_pred HHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccH---------
Confidence 67788899999987764 433 45667777777777776555455444221111
Q ss_pred HHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH
Q psy12516 63 AMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV 142 (327)
Q Consensus 63 a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v 142 (327)
..+.-.|. +.+...+.|+|.+-+.+-- ++...+..
T Consensus 106 -------------------------i~~~Gie~----F~~~~~~~GvdGlivpDLP----------------~ee~~~~~ 140 (265)
T COG0159 106 -------------------------IFNYGIEK----FLRRAKEAGVDGLLVPDLP----------------PEESDELL 140 (265)
T ss_pred -------------------------HHHhhHHH----HHHHHHHcCCCEEEeCCCC----------------hHHHHHHH
Confidence 11112333 3345566777766544211 34455666
Q ss_pred HHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-cCEEEecCCCCccCH--HHHHHHHHHHHHhcCCCeEE
Q psy12516 143 STALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-CYEISLGDTIGVGTP--GTMRLMLEDVLTVIPADRLA 219 (327)
Q Consensus 143 ~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G~~~P--~~~~~~~~~~~~~~~~~~l~ 219 (327)
+.+++.|+.... +.+| -++++.+.++.+... | .+-+...-++|.-.| ..+.++++.+|+.. ++|+.
T Consensus 141 ~~~~~~gi~~I~-----lvaP---tt~~~rl~~i~~~a~--GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~ 209 (265)
T COG0159 141 KAAEKHGIDPIF-----LVAP---TTPDERLKKIAEAAS--GFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVL 209 (265)
T ss_pred HHHHHcCCcEEE-----EeCC---CCCHHHHHHHHHhCC--CcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeE
Confidence 777788887531 2222 134444444443221 2 345555566776665 34788888888766 45766
Q ss_pred EeecCCcCcHHHHHHHHHHh
Q psy12516 220 VHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 220 ~H~Hn~~g~a~an~l~a~~~ 239 (327)
+ |.++.+.-.+-+.
T Consensus 210 v------GFGIs~~e~~~~v 223 (265)
T COG0159 210 V------GFGISSPEQAAQV 223 (265)
T ss_pred E------ecCcCCHHHHHHH
Confidence 6 6665555444444
|
|
| >PRK09249 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=94.51 E-value=4.8 Score=39.64 Aligned_cols=133 Identities=11% Similarity=0.160 Sum_probs=81.1
Q ss_pred cCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCC
Q psy12516 10 MGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYA 84 (327)
Q Consensus 10 ~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~ 84 (327)
.+++.|.|.+-+ -.++|.++.++++.+++.++- .++.+-++-+ .-....+.++ ++|+.++..++..+..
T Consensus 101 ~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~--~lt~e~l~~l~~aG~~risiGvqS~~~---- 174 (453)
T PRK09249 101 RPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPR--ELDLEMLDALRELGFNRLSLGVQDFDP---- 174 (453)
T ss_pred CceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCC--cCCHHHHHHHHHcCCCEEEECCCCCCH----
Confidence 357788887644 446799999999999888652 2333333221 1123444555 5677777766654432
Q ss_pred CCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC-eEEEEEeeeccCC
Q psy12516 85 RGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI-RVRGYISCVVGCP 163 (327)
Q Consensus 85 ~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi-~v~~~l~~~~g~~ 163 (327)
++...+.+ ..+ .+.+.+.++.+++.|+ .+.+.++ +|-|
T Consensus 175 ----------~~L~~l~r-------------------------~~~----~~~~~~ai~~l~~~G~~~v~~dli--~GlP 213 (453)
T PRK09249 175 ----------EVQKAVNR-------------------------IQP----FEFTFALVEAARELGFTSINIDLI--YGLP 213 (453)
T ss_pred ----------HHHHHhCC-------------------------CCC----HHHHHHHHHHHHHcCCCcEEEEEE--ccCC
Confidence 12211111 001 3456677888888888 4554444 4545
Q ss_pred CCCCCChHHHHHHHHHHHHcCcCEEEecC
Q psy12516 164 YEGAVPPHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 164 ~~~r~~~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
. -+.+.+.+..+.+.+.+++.|.+-.
T Consensus 214 g---qt~e~~~~~l~~~~~l~~~~i~~y~ 239 (453)
T PRK09249 214 K---QTPESFARTLEKVLELRPDRLAVFN 239 (453)
T ss_pred C---CCHHHHHHHHHHHHhcCCCEEEEcc
Confidence 3 4778888888999999998776654
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.1 Score=41.74 Aligned_cols=82 Identities=15% Similarity=0.098 Sum_probs=71.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
++.|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++..++...+ +++-+|+- ++.--++..+..|.++|
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G 103 (309)
T cd00952 24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG 103 (309)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999 58899999999988887754 77888875 67788899999999999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 104 ad~vlv~ 110 (309)
T cd00952 104 ADGTMLG 110 (309)
T ss_pred CCEEEEC
Confidence 9986554
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd03307 Mta_CmuA_like MtaA_CmuA_like family | Back alignment and domain information |
|---|
Probab=94.46 E-value=1.5 Score=41.20 Aligned_cols=142 Identities=15% Similarity=0.206 Sum_probs=78.2
Q ss_pred HHHHHHHHcCcCEEEecCCccc---cCHHHHHHHHH----HHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLGDTIGV---GTPGTMRLMLE----DVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~---~~p~~~~~~~~----~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~ 73 (327)
++++...++|+|.|.+.|+.+. .+|...++++. .+.+.+...++.+|.+-+. .+.+..+ +.|++.+..
T Consensus 175 ~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG~~----~~~l~~~~~~g~d~~~~ 250 (326)
T cd03307 175 EYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHICGNT----TPILEYIAQCGFDGISV 250 (326)
T ss_pred HHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCC----hhHHHHHHHcCCCeecc
Confidence 5677788999999999998753 38998876652 2222232235677765443 3345555 568877531
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
.. ..++++....+.. ..+.-|+|...++ +..++++..+..+++++ .|..+
T Consensus 251 -----d~---------~~dl~e~~~~~g~~~~i~Gnidp~~~l-----------~~gt~e~i~~~~~~~l~----~g~~I 301 (326)
T cd03307 251 -----DE---------KVDVKTAKEIVGGRAALIGNVSPSQTL-----------LNGTPEDVKAEARKCLE----DGVDI 301 (326)
T ss_pred -----cc---------cCCHHHHHHHcCCceEEEeCCChHHHh-----------cCCCHHHHHHHHHHHHH----ccCCE
Confidence 11 2355555544432 3344445544211 12344444444444444 34332
Q ss_pred EEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 153 RGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 153 ~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
. ..||-....+++|.+..+.+.+.
T Consensus 302 l-----~~Gc~i~~~tp~env~a~v~a~~ 325 (326)
T cd03307 302 L-----APGCGIAPRTPLANLKAMVEARK 325 (326)
T ss_pred e-----cCcCCCCCCCCHHHHHHHHHHHh
Confidence 1 23554444678888887777654
|
MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM. |
| >TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family | Back alignment and domain information |
|---|
Probab=94.45 E-value=1.8 Score=40.84 Aligned_cols=145 Identities=19% Similarity=0.213 Sum_probs=79.7
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHH----HHHhhcC--CCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLE----DVLTVIP--ADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~----~~~~~~~--~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++.+.+.|+|.|.+.|..+ ..+|...++++. .+.+.+. +....+|+.-+.. +.+..+ +.|++.+
T Consensus 184 ~~~~~~~~~Gad~I~i~dp~a~~~~lsp~~f~e~~~p~~k~i~~~i~~~g~~~ilH~CG~~~----~~~~~l~~~g~d~l 259 (340)
T TIGR01463 184 AYAKAMVEAGADVIAIADPFASSDLISPETYKEFGLPYQKRLFAYIKEIGGITVLHICGFTQ----PILRDIANNGCFGF 259 (340)
T ss_pred HHHHHHHHcCCCEEEecCCccCccccCHHHHHHHHHHHHHHHHHHHHhcCCceEEEECCCch----hhHHHHHHhCCCEE
Confidence 467778899999999999764 778987766542 2222221 2456778876542 344444 5688765
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
.. .. ..++++....+.+ ..+.-|+|...++. +.+++++.+..+++++ .|.
T Consensus 260 s~-----d~---------~~~l~~~~~~~g~~~~i~Gnidp~~ll~-----------~gt~eeI~~~v~~~l~----~~~ 310 (340)
T TIGR01463 260 SV-----DM---------KPGMDHAKRVIGGQASLVGNLSPFSTLM-----------NGTPEKVKKLAKEVLY----NGG 310 (340)
T ss_pred ee-----cC---------CCCHHHHHHHcCCceEEEecCChHHHhc-----------CCCHHHHHHHHHHHHH----cCC
Confidence 41 11 1234444333332 22233454433221 2244554555555544 343
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
.+. ..||-....+++|.+..+.+.+.+++
T Consensus 311 ~Il-----~~gcgi~~~tp~eni~a~v~a~~~~~ 339 (340)
T TIGR01463 311 DIV-----MPGCDIDWMTPLENLKAMIEACKSIK 339 (340)
T ss_pred eEE-----CCCCCCCCCCCHHHHHHHHHHHHhcc
Confidence 321 23454444678888888888877654
|
This subfamily is closely related to, yet is distinct from, uroporphyrinogen decarboxylase (EC 4.1.1.37). It includes two isozymes from Methanosarcina barkeri of methylcobalamin--coenzyme M methyltransferase. It also includes a chloromethane utilization protein, CmuA, which transfers the methyl group of chloromethane to a corrinoid protein. |
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=94.36 E-value=1.5 Score=40.55 Aligned_cols=81 Identities=12% Similarity=0.035 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
++.|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+..+ .+||..|.-.+..-++..+..|.++|+
T Consensus 16 g~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Ga 95 (289)
T cd00951 16 GSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGA 95 (289)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCC
Confidence 589999999999999999999999999999 4778888888888887763 467777776566677788888999999
Q ss_pred ceeee
Q psy12516 242 SVFDS 246 (327)
Q Consensus 242 ~~vd~ 246 (327)
+.+=.
T Consensus 96 d~v~~ 100 (289)
T cd00951 96 DGILL 100 (289)
T ss_pred CEEEE
Confidence 98744
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=94.35 E-value=3 Score=36.37 Aligned_cols=114 Identities=22% Similarity=0.218 Sum_probs=70.0
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCeEEEee
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAVHC 222 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~~H~ 222 (327)
+..++.+...+.+ |... .+.+....-++.+.+.|+|.|.+.=-.|.. .-..+.+.+..+++...+.++-+ .
T Consensus 49 ~~~~~~v~~~~~f----p~g~-~~~~~k~~eve~A~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkv-I 122 (203)
T cd00959 49 KGSGVKVCTVIGF----PLGA-TTTEVKVAEAREAIADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKV-I 122 (203)
T ss_pred CCCCcEEEEEEec----CCCC-CcHHHHHHHHHHHHHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEE-E
Confidence 3456666655444 3332 455556666788888999988887777743 23557777888887765555433 2
Q ss_pred cCCcCc----HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 223 HDTYGQ----ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 223 Hn~~g~----a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
..+..+ =.-.+..|+++|+|+|-++ .|.+ .+++.+|++-.+.+
T Consensus 123 ~e~~~l~~~~i~~a~ria~e~GaD~IKTs-TG~~--------~~~at~~~v~~~~~ 169 (203)
T cd00959 123 LETGLLTDEEIIKACEIAIEAGADFIKTS-TGFG--------PGGATVEDVKLMKE 169 (203)
T ss_pred EecCCCCHHHHHHHHHHHHHhCCCEEEcC-CCCC--------CCCCCHHHHHHHHH
Confidence 222222 2334667899999999998 4443 24567776544333
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=94.35 E-value=3.5 Score=36.53 Aligned_cols=166 Identities=17% Similarity=0.149 Sum_probs=93.1
Q ss_pred HHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 3 VASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 3 ~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
-++++.+.|+| .+-+.| |..-|.-. .+.++++++..+..++..|..-..
T Consensus 17 ~i~~l~~~g~~~lH~DvmD--G~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~------------------------- 69 (220)
T PRK08883 17 DVEKVLAAGADVVHFDVMD--NHYVPNLTFGAPICKALRDYGITAPIDVHLMVKP------------------------- 69 (220)
T ss_pred HHHHHHHcCCCEEEEeccc--CcccCccccCHHHHHHHHHhCCCCCEEEEeccCC-------------------------
Confidence 45677788888 477777 77776632 345777776533466666664432
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEee
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISC 158 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~ 158 (327)
++..+..+ .++|.|.+.+-.-. -....+++++.|+.|+++...+.
T Consensus 70 --------------p~~~i~~~----~~~gad~i~~H~Ea----------------~~~~~~~l~~ik~~g~k~Glaln- 114 (220)
T PRK08883 70 --------------VDRIIPDF----AKAGASMITFHVEA----------------SEHVDRTLQLIKEHGCQAGVVLN- 114 (220)
T ss_pred --------------HHHHHHHH----HHhCCCEEEEcccC----------------cccHHHHHHHHHHcCCcEEEEeC-
Confidence 22222222 22344433321110 12245567788888988765333
Q ss_pred eccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhcCC----CeEEEeecCCcCcHH
Q psy12516 159 VVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVIPA----DRLAVHCHDTYGQAL 230 (327)
Q Consensus 159 ~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~~~----~~l~~H~Hn~~g~a~ 230 (327)
| .++.+.+..+.+.+ |.+.+ +.+.|...-....+.++.+++..+. .++++ |-|...
T Consensus 115 ----P---~Tp~~~i~~~l~~~-----D~vlvMtV~PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v----dGGI~~ 178 (220)
T PRK08883 115 ----P---ATPLHHLEYIMDKV-----DLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI----DGGVKV 178 (220)
T ss_pred ----C---CCCHHHHHHHHHhC-----CeEEEEEecCCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE----ECCCCH
Confidence 2 25666666555432 33222 2334432222334456666665432 34544 889999
Q ss_pred HHHHHHHHhcCceeee
Q psy12516 231 ANILTAMEFGISVFDS 246 (327)
Q Consensus 231 an~l~a~~~G~~~vd~ 246 (327)
.|.-...++|++.+=+
T Consensus 179 eni~~l~~aGAd~vVv 194 (220)
T PRK08883 179 DNIREIAEAGADMFVA 194 (220)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 9999999999998743
|
|
| >TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH | Back alignment and domain information |
|---|
Probab=94.28 E-value=1.5 Score=41.12 Aligned_cols=73 Identities=16% Similarity=0.233 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecC---------CCCccCHHHHHH
Q psy12516 134 SLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGD---------TIGVGTPGTMRL 204 (327)
Q Consensus 134 ~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~D---------t~G~~~P~~~~~ 204 (327)
.++++.+.++.+++.|+.+.+.... + .+.+.+++.++++.+.+.|++.+.+.- ..-.+.+++..+
T Consensus 147 ~f~~~l~~I~~l~~~G~~v~v~~tv-~-----~~~n~~ei~~~~~~~~~lGv~~i~i~p~~~~~~a~~~~~~l~~~e~~~ 220 (318)
T TIGR03470 147 VFDRAVEAIREAKARGFRVTTNTTL-F-----NDTDPEEVAEFFDYLTDLGVDGMTISPGYAYEKAPDQDHFLGRRQTKK 220 (318)
T ss_pred cHHHHHHHHHHHHHCCCcEEEEEEE-e-----CCCCHHHHHHHHHHHHHcCCCEEEEecCcccccccccccccCHHHHHH
Confidence 4677888899999999987654321 1 246889999999999999999887732 112456777788
Q ss_pred HHHHHHHh
Q psy12516 205 MLEDVLTV 212 (327)
Q Consensus 205 ~~~~~~~~ 212 (327)
++..+.+.
T Consensus 221 ~~~~~~~~ 228 (318)
T TIGR03470 221 LFREVLSN 228 (318)
T ss_pred HHHHHHhh
Confidence 88777653
|
The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH |
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=94.25 E-value=2.7 Score=40.24 Aligned_cols=129 Identities=13% Similarity=0.143 Sum_probs=75.5
Q ss_pred cCEEEecC-CccccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCC
Q psy12516 12 CYEISLGD-TIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 12 ~~~i~~~D-t~G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~ 86 (327)
++.|.+.+ |--.++|.++.++++.+++.++ +.++.+-++-+ .-....+..+ ++|+.+|..++..+..
T Consensus 60 i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~--~i~~e~l~~l~~~G~~rvslGvQS~~~------ 131 (375)
T PRK05628 60 VSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPE--STSPEFFAALRAAGFTRVSLGMQSAAP------ 131 (375)
T ss_pred eeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC--CCCHHHHHHHHHcCCCEEEEecccCCH------
Confidence 67899974 4456789999999999988764 22333333221 1122333444 4666666655553332
Q ss_pred ccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCC
Q psy12516 87 ASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYE 165 (327)
Q Consensus 87 ~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~ 165 (327)
++...+. -+.+ .+.+.+.++.+++.|+. +...++ +|-|.
T Consensus 132 --------~~L~~l~-------------------------R~~s----~~~~~~a~~~l~~~g~~~v~~dli--~GlPg- 171 (375)
T PRK05628 132 --------HVLAVLD-------------------------RTHT----PGRAVAAAREARAAGFEHVNLDLI--YGTPG- 171 (375)
T ss_pred --------HHHHHcC-------------------------CCCC----HHHHHHHHHHHHHcCCCcEEEEEe--ccCCC-
Confidence 1111110 0111 34456677788888887 655444 45454
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+..+.+.+.+++.|.+
T Consensus 172 --qt~~~~~~tl~~~~~l~~~~i~~ 194 (375)
T PRK05628 172 --ESDDDWRASLDAALEAGVDHVSA 194 (375)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEe
Confidence 36678888888888888886644
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=94.24 E-value=2.2 Score=38.92 Aligned_cols=113 Identities=18% Similarity=0.240 Sum_probs=69.9
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+...++|+|.+-+.+-- ++...++.+.+++.|+.....+ +| -++.+.+..+++...
T Consensus 113 ~~~~~aGvdgviipDLP----------------~ee~~~~~~~~~~~gi~~I~lv-----~P---tT~~eri~~i~~~a~ 168 (263)
T CHL00200 113 KKISQAGVKGLIIPDLP----------------YEESDYLISVCNLYNIELILLI-----AP---TSSKSRIQKIARAAP 168 (263)
T ss_pred HHHHHcCCeEEEecCCC----------------HHHHHHHHHHHHHcCCCEEEEE-----CC---CCCHHHHHHHHHhCC
Confidence 34567788877654321 4567788999999999864321 22 145556555554332
Q ss_pred HcC-cCEEEecCCCCc--cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCceee
Q psy12516 182 KMG-CYEISLGDTIGV--GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFD 245 (327)
Q Consensus 182 ~~g-~~~i~l~Dt~G~--~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd 245 (327)
| ++.+...-++|. ..|.++.++++.+|+... .|+.+ .+|-. -.++.....+|+|.|=
T Consensus 169 --gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t~-~Pi~v----GFGI~~~e~~~~~~~~GADGvV 229 (263)
T CHL00200 169 --GCIYLVSTTGVTGLKTELDKKLKKLIETIKKMTN-KPIIL----GFGISTSEQIKQIKGWNINGIV 229 (263)
T ss_pred --CcEEEEcCCCCCCCCccccHHHHHHHHHHHHhcC-CCEEE----ECCcCCHHHHHHHHhcCCCEEE
Confidence 1 233444666676 567889999999998653 46666 33555 3355555677888643
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.19 E-value=3.8 Score=36.34 Aligned_cols=187 Identities=16% Similarity=0.166 Sum_probs=94.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEeccc-CCCCCCCCCCccCCCcHHHHHHH
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIA-GLGGCPYARGASGNVATEDLVYM 99 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~-glg~~p~~~~~~gn~~~e~v~~~ 99 (327)
...|+.+++.+.+..++ .+|-.-+.+-..+.-+...++ .++. +-+.++ .+| ...++.-+.-
T Consensus 17 p~~t~~~i~~~~~~A~~------~~~~avcv~p~~v~~a~~~l~~~~v~-v~tVigFP~G----------~~~~~~K~~e 79 (221)
T PRK00507 17 PEATEEDIDKLCDEAKE------YGFASVCVNPSYVKLAAELLKGSDVK-VCTVIGFPLG----------ANTTAVKAFE 79 (221)
T ss_pred CCCCHHHHHHHHHHHHH------hCCeEEEECHHHHHHHHHHhCCCCCe-EEEEecccCC----------CChHHHHHHH
Confidence 34567777777665554 234444444444444444442 2222 222222 222 2233322111
Q ss_pred hhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHH
Q psy12516 100 LEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATA 179 (327)
Q Consensus 100 l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~ 179 (327)
.+.+++.|.+.+.+....+.... -..++..+.+..+.+.+ .+..+.+.+.. ...+.+.+.++++.
T Consensus 80 -~~~Ai~~GA~EiD~Vin~~~~~~-----g~~~~v~~ei~~v~~~~--~~~~lKvIlEt-------~~L~~e~i~~a~~~ 144 (221)
T PRK00507 80 -AKDAIANGADEIDMVINIGALKS-----GDWDAVEADIRAVVEAA--GGAVLKVIIET-------CLLTDEEKVKACEI 144 (221)
T ss_pred -HHHHHHcCCceEeeeccHHHhcC-----CCHHHHHHHHHHHHHhc--CCceEEEEeec-------CcCCHHHHHHHHHH
Confidence 12455666666655444333211 01233344444444433 35555544443 24678889999999
Q ss_pred HHHcCcCEEEecCCC--CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc-HHHHHHHHHHhcCceeeec
Q psy12516 180 LYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ-ALANILTAMEFGISVFDSS 247 (327)
Q Consensus 180 ~~~~g~~~i~l~Dt~--G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~-a~an~l~a~~~G~~~vd~s 247 (327)
+.+.|+|-|.-.-+. |-.+|+.++.+.+.+. . .+.+..-- |- ....++.-+++|+++|=+|
T Consensus 145 ~~~agadfIKTsTG~~~~gat~~~v~~m~~~~~----~-~~~IKasG--GIrt~~~a~~~i~aGA~riGtS 208 (221)
T PRK00507 145 AKEAGADFVKTSTGFSTGGATVEDVKLMRETVG----P-RVGVKASG--GIRTLEDALAMIEAGATRLGTS 208 (221)
T ss_pred HHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHhC----C-CceEEeeC--CcCCHHHHHHHHHcCcceEccC
Confidence 999999954443332 2356776666554443 2 23332221 11 1456677889999987554
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.24 Score=49.12 Aligned_cols=69 Identities=16% Similarity=0.154 Sum_probs=56.7
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|+|.|.+ |++- ..|..+.++++++++.+|++++-. ..+.....+...+++|++.|+++++
T Consensus 228 ~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 228 GKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred HHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCc
Confidence 5688899999999877 7775 556899999999999999887766 4455567778888999999997776
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=94.05 E-value=3.4 Score=37.37 Aligned_cols=112 Identities=21% Similarity=0.319 Sum_probs=67.0
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+...+.|+|.+-+.+-- ++...++.+.+++.|+.....+ +| .++.+.+..+++..
T Consensus 100 ~~~~~aGv~GviipDLP----------------~ee~~~~~~~~~~~gl~~I~lv-----~P---tt~~~ri~~ia~~~- 154 (250)
T PLN02591 100 ATIKEAGVHGLVVPDLP----------------LEETEALRAEAAKNGIELVLLT-----TP---TTPTERMKAIAEAS- 154 (250)
T ss_pred HHHHHcCCCEEEeCCCC----------------HHHHHHHHHHHHHcCCeEEEEe-----CC---CCCHHHHHHHHHhC-
Confidence 45566777776554211 4667888999999999864322 12 13445555544431
Q ss_pred HcC-cCEEEecCCCCc--cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCcee
Q psy12516 182 KMG-CYEISLGDTIGV--GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVF 244 (327)
Q Consensus 182 ~~g-~~~i~l~Dt~G~--~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~v 244 (327)
-| ++.|...-++|. ..|.++.++++.+|+. .++|+-+ -+|.. -.++-.....|+|.+
T Consensus 155 -~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~v----GFGI~~~e~v~~~~~~GADGv 215 (250)
T PLN02591 155 -EGFVYLVSSTGVTGARASVSGRVESLLQELKEV-TDKPVAV----GFGISKPEHAKQIAGWGADGV 215 (250)
T ss_pred -CCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-CCCceEE----eCCCCCHHHHHHHHhcCCCEE
Confidence 12 233444556665 5588999999999985 4556555 11444 235566667778764
|
|
| >TIGR00510 lipA lipoate synthase | Back alignment and domain information |
|---|
Probab=94.05 E-value=2.8 Score=39.08 Aligned_cols=51 Identities=14% Similarity=0.184 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
.++..++++.+++. |+.+...++.-|| =+.+++.+..+.+.+.|++.+.+.
T Consensus 190 ~e~~Le~l~~ak~~~pgi~~~TgiIVGlG------ETeee~~etl~~Lrelg~d~v~ig 242 (302)
T TIGR00510 190 YRWSLKLLERAKEYLPNLPTKSGIMVGLG------ETNEEIKQTLKDLRDHGVTMVTLG 242 (302)
T ss_pred HHHHHHHHHHHHHhCCCCeecceEEEECC------CCHHHHHHHHHHHHhcCCCEEEee
Confidence 44566778888887 6776655554443 256888999999999999988763
|
The family shows strong sequence conservation. |
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=94.01 E-value=4 Score=35.91 Aligned_cols=92 Identities=16% Similarity=0.069 Sum_probs=59.0
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
..+++++.|+.|+++...+. | .++.+.+..+... +|.|.+ +...|...-..+.+.++.+|+..
T Consensus 95 ~~~~l~~Ik~~G~k~GlAln-----P---~Tp~~~i~~~l~~-----vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~~~~ 161 (210)
T PRK08005 95 PSEILADIRAIGAKAGLALN-----P---ATPLLPYRYLALQ-----LDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF 161 (210)
T ss_pred HHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHHHHh-----cCEEEEEEecCCCccceecHHHHHHHHHHHHhc
Confidence 44567888888998765443 2 2566666665542 242222 33445544456666778888766
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+...|++ |-|....|.-...++||+.+=+
T Consensus 162 ~~~~I~V----DGGI~~~~i~~l~~aGad~~V~ 190 (210)
T PRK08005 162 PAAECWA----DGGITLRAARLLAAAGAQHLVI 190 (210)
T ss_pred ccCCEEE----ECCCCHHHHHHHHHCCCCEEEE
Confidence 5433443 7899999999999999997643
|
|
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=93.99 E-value=4.2 Score=38.04 Aligned_cols=68 Identities=19% Similarity=0.219 Sum_probs=43.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+.+++|.++|+|.+++.= .+ .+-.+-+..+++..+ +|+..-+|-++.+ ++.+.+.|++-+-..=+.+|
T Consensus 40 ~QI~~L~~aG~dIVRvtv----~~-~e~A~A~~~Ik~~~~-vPLVaDiHf~~rl----a~~~~~~g~~k~RINPGNig 107 (361)
T COG0821 40 AQIKALERAGCDIVRVTV----PD-MEAAEALKEIKQRLN-VPLVADIHFDYRL----ALEAAECGVDKVRINPGNIG 107 (361)
T ss_pred HHHHHHHHcCCCEEEEec----CC-HHHHHHHHHHHHhCC-CCEEEEeeccHHH----HHHhhhcCcceEEECCcccC
Confidence 457889999999777653 12 334455777888875 7776666666654 35666777766653333343
|
|
| >cd03309 CmuC_like CmuC_like | Back alignment and domain information |
|---|
Probab=93.95 E-value=3.1 Score=39.11 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=79.6
Q ss_pred HHHHHHHHc-CcCEEEecCCccc-----cCHHHHHHHH--------HHHHhhcCCCeeEEEecCccchHHHHHHHHH-Hc
Q psy12516 2 KVASALYKM-GCYEISLGDTIGV-----GTPGTMRLML--------EDVLTVIPADRLAVHCHDTYGQALANILTAM-EF 66 (327)
Q Consensus 2 ~~~~~~~~~-g~~~i~~~Dt~G~-----~~p~~~~~~~--------~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~a 66 (327)
++++...+. |+|.|.+.|+.+. ++|...++++ +.+++.. ..++.+|...+. ..++..+ +.
T Consensus 159 ~y~~~qiea~Gad~I~i~Ddwa~~~~~~LSpe~f~efv~P~~krIi~~ik~~~-g~piilH~cG~~----~~~l~~~~e~ 233 (321)
T cd03309 159 KLYERRIKHLEPDLLVYHDDLGSQKGSFISPATFREFILPRMQRIFDFLRSNT-SALIVHHSCGAA----ASLVPSMAEM 233 (321)
T ss_pred HHHHHHHHHhCCCEEEEeCCCccccCCccCHHHHHHHHHHHHHHHHHHHHhcc-CCceEEEeCCCc----HHHHHHHHHc
Confidence 456666666 9999999997655 6999877554 2333221 256778877654 2345555 67
Q ss_pred CCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy12516 67 GISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA 145 (327)
Q Consensus 67 G~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a 145 (327)
|++.+.+-... .+++++...+.. ..+.-++|...++.. .++++..+.++++++..
T Consensus 234 g~dvl~~d~~~-------------~dl~eak~~~g~k~~l~GNlDp~~L~~~-----------~t~E~i~~~v~~~l~~~ 289 (321)
T cd03309 234 GVDSWNVVMTA-------------NNTAELRRLLGDKVVLAGAIDDVALDTA-----------TWPEEDARGVAKAAAEC 289 (321)
T ss_pred CCCEEEecCCC-------------CCHHHHHHHhCCCeEEEcCCChHHhcCC-----------CCHHHHHHHHHHHHHHh
Confidence 98887732111 255565555543 345555665433321 22345566677777766
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHH
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVAT 178 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~ 178 (327)
...|-++. ..++..-....++.+..+..
T Consensus 290 g~~~~fIf-----~~~~~~~~~~~~~~~~~~~~ 317 (321)
T cd03309 290 APIHPFIS-----APTAGLPFSIFPEVLRRVSA 317 (321)
T ss_pred CCCCCEEe-----CccCCCCcccCHHHHHHHHH
Confidence 55344332 12233222455666555443
|
Proteins similar to the putative corrinoid methyltransferase CmuC. Its function has been inferred from sequence similarity to the methyltransferases CmuA and MtaA. Mutants of Methylobacterium sp. disrupted in cmuC and purU appear deficient in some step of chloromethane metabolism. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.83 E-value=2.5 Score=42.17 Aligned_cols=69 Identities=12% Similarity=0.065 Sum_probs=50.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.++|+|.|.+ |++---++. ..+.++++++.+|++++..= .......+..++++|++.|.++++
T Consensus 244 ~~~~~l~~ag~d~i~i-d~a~G~s~~-~~~~i~~ik~~~~~~~v~aG----~V~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 244 ERAAALIEAGVDVLVV-DSSQGNSIY-QIDMIKKLKSNYPHVDIIAG----NVVTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHCCCCEEEE-ecCCCCchH-HHHHHHHHHhhCCCceEEEC----CcCCHHHHHHHHHcCCCEEEECCc
Confidence 5688899999999887 544333344 35679999999988787772 223345778888999999997654
|
|
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.79 E-value=4 Score=38.90 Aligned_cols=127 Identities=12% Similarity=0.194 Sum_probs=74.2
Q ss_pred cCEEEecCCc-cccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCcc
Q psy12516 12 CYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 12 ~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
++.|++..-+ -.++|..+.++++.+++.++. .++.+-++-+. -....+..+ ++|+.+|..++..+..
T Consensus 57 ~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~~~~~eitiE~nP~~--lt~e~l~~lk~~G~nrisiGvQS~~d-------- 126 (353)
T PRK05904 57 FKTIYLGGGTPNCLNDQLLDILLSTIKPYVDNNCEFTIECNPEL--ITQSQINLLKKNKVNRISLGVQSMNN-------- 126 (353)
T ss_pred eEEEEECCCccccCCHHHHHHHHHHHHHhcCCCCeEEEEeccCc--CCHHHHHHHHHcCCCEEEEecccCCH--------
Confidence 6788887755 356788899999999887653 34444333222 122333444 4666666655553331
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGA 167 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r 167 (327)
+++..+.+ +-+ .+.+.+.++.+++.|+. +.+.++ +|-|.
T Consensus 127 ------~vL~~l~R-------------------------~~~----~~~~~~ai~~lr~~G~~~v~~dlI--~GlPg--- 166 (353)
T PRK05904 127 ------NILKQLNR-------------------------THT----IQDSKEAINLLHKNGIYNISCDFL--YCLPI--- 166 (353)
T ss_pred ------HHHHHcCC-------------------------CCC----HHHHHHHHHHHHHcCCCcEEEEEe--ecCCC---
Confidence 12111110 011 34566778888888875 554444 45453
Q ss_pred CChHHHHHHHHHHHHcCcCEE
Q psy12516 168 VPPHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i 188 (327)
-+.+.+.+..+.+.+.+++.|
T Consensus 167 qt~e~~~~tl~~~~~l~p~~i 187 (353)
T PRK05904 167 LKLKDLDEVFNFILKHKINHI 187 (353)
T ss_pred CCHHHHHHHHHHHHhcCCCEE
Confidence 466777888888888887754
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=93.78 E-value=5.5 Score=36.71 Aligned_cols=108 Identities=20% Similarity=0.269 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC-------CCCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc--CHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE-------GAVPPHNVTRVATALYKMGCYEISL--GDTIGVG--TPG 200 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~-------~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~--~P~ 200 (327)
+|.++..+++++++++.|..+.+-+.. .|..+. +-+++++..++. .+.|+|.+.+ .-..|.- .|.
T Consensus 111 ~eni~~t~~v~~~a~~~gv~veaE~gh-lG~~d~~~~~~g~s~t~~eea~~f~---~~tg~DyLAvaiG~~hg~~~~~~~ 186 (281)
T PRK06806 111 EENIQKTKEIVELAKQYGATVEAEIGR-VGGSEDGSEDIEMLLTSTTEAKRFA---EETDVDALAVAIGNAHGMYNGDPN 186 (281)
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEEeee-ECCccCCcccccceeCCHHHHHHHH---HhhCCCEEEEccCCCCCCCCCCCc
Confidence 344777888899999999888766554 331211 134555544433 3469998887 5555543 122
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
-=.++++.+++..+ +|+..|. --|....|...+++.|+..|..
T Consensus 187 l~~~~L~~i~~~~~-iPlV~hG--~SGI~~e~~~~~i~~G~~kinv 229 (281)
T PRK06806 187 LRFDRLQEINDVVH-IPLVLHG--GSGISPEDFKKCIQHGIRKINV 229 (281)
T ss_pred cCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHcCCcEEEE
Confidence 22345677776654 6887775 3377789999999999998654
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=93.70 E-value=2.1 Score=39.63 Aligned_cols=82 Identities=10% Similarity=0.093 Sum_probs=70.5
Q ss_pred CCCCChHHHHHHHHHHHHcC-cCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHH
Q psy12516 165 EGAVPPHNVTRVATALYKMG-CYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAME 238 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~ 238 (327)
+++.+.+.+.++++.+.+.| ++.|.+.-|+| .+++++-.++++.+.+...+ ++|-+|. +++.--++..+..|.+
T Consensus 15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~ 94 (290)
T TIGR00683 15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATE 94 (290)
T ss_pred CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999 99999999999 58899999999888887643 6788885 6777788888999999
Q ss_pred hcCceeee
Q psy12516 239 FGISVFDS 246 (327)
Q Consensus 239 ~G~~~vd~ 246 (327)
+|++.|=.
T Consensus 95 ~Gad~v~v 102 (290)
T TIGR00683 95 LGYDCLSA 102 (290)
T ss_pred hCCCEEEE
Confidence 99998765
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=93.70 E-value=3.9 Score=34.71 Aligned_cols=97 Identities=23% Similarity=0.276 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc----CHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG----TPGTMRLMLE 207 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~----~P~~~~~~~~ 207 (327)
++..+.++++.+.+ +.++.+..+.. |... .+++.+.++++.+.+.|++.| +++.|.. ....+.++.+
T Consensus 97 ~~~~~~~~~i~~~~-~~~~pv~iy~~-----p~~~-~~~~~~~~~~~~~~~~g~~~i--K~~~~~~~~~~~~~~~~~i~~ 167 (201)
T cd00945 97 EEVLEEIAAVVEAA-DGGLPLKVILE-----TRGL-KTADEIAKAARIAAEAGADFI--KTSTGFGGGGATVEDVKLMKE 167 (201)
T ss_pred HHHHHHHHHHHHHh-cCCceEEEEEE-----CCCC-CCHHHHHHHHHHHHHhCCCEE--EeCCCCCCCCCCHHHHHHHHH
Confidence 33345555555555 45787765433 2211 377888888888888888875 5666632 5555555443
Q ss_pred HHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 208 DVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 208 ~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
..+ ..++..-.-.+ ...+...++..|++.+
T Consensus 168 ----~~~~~~~v~~~gg~~---~~~~~~~~~~~Ga~g~ 198 (201)
T cd00945 168 ----AVGGRVGVKAAGGIK---TLEDALAAIEAGADGI 198 (201)
T ss_pred ----hcccCCcEEEECCCC---CHHHHHHHHHhcccee
Confidence 333 23454433222 2467788888888754
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.68 E-value=1.8 Score=39.90 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=56.2
Q ss_pred CChHHHHHHHHHHHHcCcCEEEec----------CCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLG----------DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~----------Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
.+++.+.+.++.+.++|+|.|.|- +..| -.|+.+.++++.+++.. +.||.+-.--+..-....+..+.
T Consensus 99 ~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~ 176 (296)
T cd04740 99 STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEAVAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAE 176 (296)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHHHHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHH
Confidence 457899999999999999987771 2222 57899999999999886 46777766544333344455677
Q ss_pred HhcCceeee
Q psy12516 238 EFGISVFDS 246 (327)
Q Consensus 238 ~~G~~~vd~ 246 (327)
++|++.|+.
T Consensus 177 ~~G~d~i~~ 185 (296)
T cd04740 177 EAGADGLTL 185 (296)
T ss_pred HcCCCEEEE
Confidence 899998754
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=93.66 E-value=6 Score=37.40 Aligned_cols=127 Identities=17% Similarity=0.158 Sum_probs=76.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
+.++++.++|++.+++.= .+ .+-.+-+..+++..| +|+..-.|-++-+ ++.|+++|++-+-..=+.+|.
T Consensus 46 ~Qi~~L~~aGceiVRvav----~~-~~~a~al~~I~~~~~-iPlvADIHFd~~l----Al~a~~~G~~~iRINPGNig~- 114 (360)
T PRK00366 46 AQIKRLARAGCEIVRVAV----PD-MEAAAALPEIKKQLP-VPLVADIHFDYRL----ALAAAEAGADALRINPGNIGK- 114 (360)
T ss_pred HHHHHHHHcCCCEEEEcc----CC-HHHHHhHHHHHHcCC-CCEEEecCCCHHH----HHHHHHhCCCEEEECCCCCCc-
Confidence 567889999999777653 12 334555777888886 8888888888865 478899999998643334432
Q ss_pred CCCCCccCCCcHHHHHHHhhhh--hcccCcchhhhhhhhhHHHHHHhhcC-ChHHHHHHHHHHHHHHHHcCCe
Q psy12516 82 PYARGASGNVATEDLVYMLEGK--SMQCGVKEIAVFASASEMFSKRNINC-TIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~--~~~~Gid~i~l~~~~sd~~~~~~l~~-s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
+ .-..+.++...++. .+.-|++.= +++..+. .+++. +.+-.++.+.+.++.+.+.|++
T Consensus 115 -----~--~~~v~~vv~~ak~~~ipIRIGvN~G----SL~~~~~-~~yg~~t~eamveSAl~~~~~le~~~f~ 175 (360)
T PRK00366 115 -----R--DERVREVVEAAKDYGIPIRIGVNAG----SLEKDLL-EKYGEPTPEALVESALRHAKILEELGFD 175 (360)
T ss_pred -----h--HHHHHHHHHHHHHCCCCEEEecCCc----cChHHHH-HHcCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 0 11234445444432 233344332 2222211 12343 5566677777777778787775
|
|
| >PRK08599 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=3.5 Score=39.48 Aligned_cols=130 Identities=11% Similarity=0.167 Sum_probs=73.5
Q ss_pred CcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
+++.|.+.+-+ -.++|..+.++++.+++.++- .++.+.++- +.-....+..+ ++|+.++..++..+..
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p--~~l~~e~l~~l~~~G~~rvsiGvqS~~~----- 123 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANP--GDLTKEKLQVLKDSGVNRISLGVQTFND----- 123 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCC--CCCCHHHHHHHHHcCCCEEEEecccCCH-----
Confidence 46678876533 346688899999999887652 233333321 11122334444 4666666655553331
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~ 164 (327)
++...+ +-+.+ .+.+.+.++.+++.|+. +.+.+ ++|-|.
T Consensus 124 ---------~~l~~l-------------------------~r~~~----~~~~~~~i~~l~~~g~~~v~~dl--i~GlPg 163 (377)
T PRK08599 124 ---------ELLKKI-------------------------GRTHN----EEDVYEAIANAKKAGFDNISIDL--IYALPG 163 (377)
T ss_pred ---------HHHHHc-------------------------CCCCC----HHHHHHHHHHHHHcCCCcEEEee--ecCCCC
Confidence 111111 00111 34566778888888886 44333 355554
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+..+.+.+.+++.|.+
T Consensus 164 ---qt~~~~~~~l~~~~~l~~~~i~~ 186 (377)
T PRK08599 164 ---QTIEDFKESLAKALALDIPHYSA 186 (377)
T ss_pred ---CCHHHHHHHHHHHHccCCCEEee
Confidence 36678888888888888886544
|
|
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=1.5 Score=39.48 Aligned_cols=93 Identities=17% Similarity=0.240 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+...++++.+++.|+++...+. | .++.+.+..+.+. ....+++ .-..|.-.+..+.+.++.+|+..
T Consensus 116 ~~~~~~~~~~~~~Gl~~~~~v~-----p---~T~~e~l~~~~~~----~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~ 183 (244)
T PRK13125 116 DDLEKYVEIIKNKGLKPVFFTS-----P---KFPDLLIHRLSKL----SPLFIYYGLRPATGVPLPVSVERNIKRVRNLV 183 (244)
T ss_pred HHHHHHHHHHHHcCCCEEEEEC-----C---CCCHHHHHHHHHh----CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhc
Confidence 4567789999999999764322 1 2455555554443 2333433 22345567888899999999887
Q ss_pred CCCeEEEeecCCcCc-HHHHHHHHHHhcCcee
Q psy12516 214 PADRLAVHCHDTYGQ-ALANILTAMEFGISVF 244 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~-a~an~l~a~~~G~~~v 244 (327)
++.++.+ +.|. ...++-.++++|+|.+
T Consensus 184 ~~~~i~v----~gGI~~~e~i~~~~~~gaD~v 211 (244)
T PRK13125 184 GNKYLVV----GFGLDSPEDARDALSAGADGV 211 (244)
T ss_pred CCCCEEE----eCCcCCHHHHHHHHHcCCCEE
Confidence 6555554 4466 3456666679998864
|
|
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.96 Score=43.77 Aligned_cols=72 Identities=17% Similarity=0.188 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
..+.++.+.++|+|.|.+ |+.. -.+..+.++++.+|+.+|+.+|...-=-+ ...+..++++|+|.|.. |+|
T Consensus 154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T----~e~a~~l~~aGaD~I~v---G~g 224 (404)
T PRK06843 154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVT----KEAALDLISVGADCLKV---GIG 224 (404)
T ss_pred HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCC----HHHHHHHHHcCCCEEEE---CCC
Confidence 567788899999999988 5544 33688999999999999987665533223 46678889999999884 555
Q ss_pred C
Q psy12516 253 G 253 (327)
Q Consensus 253 ~ 253 (327)
.
T Consensus 225 ~ 225 (404)
T PRK06843 225 P 225 (404)
T ss_pred C
Confidence 3
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=93.46 E-value=3 Score=37.84 Aligned_cols=97 Identities=15% Similarity=0.270 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-cCEEEecCCCCcc--CHHHHHHHHHHHH
Q psy12516 134 SLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-CYEISLGDTIGVG--TPGTMRLMLEDVL 210 (327)
Q Consensus 134 ~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G~~--~P~~~~~~~~~~~ 210 (327)
..+...++++.+++.|+.....+ .| .++.+.+..+.+.. -| +..+.....+|.- .+.++.+.++.+|
T Consensus 125 p~ee~~~~~~~~~~~gl~~i~lv-----~P---~T~~eri~~i~~~~--~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr 194 (256)
T TIGR00262 125 PLEESGDLVEAAKKHGVKPIFLV-----AP---NADDERLKQIAEKS--QGFVYLVSRAGVTGARNRAASALNELVKRLK 194 (256)
T ss_pred ChHHHHHHHHHHHHCCCcEEEEE-----CC---CCCHHHHHHHHHhC--CCCEEEEECCCCCCCcccCChhHHHHHHHHH
Confidence 35667788899999999864211 22 24556655555432 12 2334445666763 4567999999999
Q ss_pred HhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCceee
Q psy12516 211 TVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFD 245 (327)
Q Consensus 211 ~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd 245 (327)
+..+ .++.+ +.|.. -.++..+.++|+|.|=
T Consensus 195 ~~~~-~pi~v----gfGI~~~e~~~~~~~~GADgvV 225 (256)
T TIGR00262 195 AYSA-KPVLV----GFGISKPEQVKQAIDAGADGVI 225 (256)
T ss_pred hhcC-CCEEE----eCCCCCHHHHHHHHHcCCCEEE
Confidence 8754 35554 34554 4567777889998643
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >PRK08898 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.46 E-value=3.1 Score=40.22 Aligned_cols=128 Identities=11% Similarity=0.092 Sum_probs=77.8
Q ss_pred cCEEEecC-CccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCC
Q psy12516 12 CYEISLGD-TIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 12 ~~~i~~~D-t~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~ 86 (327)
++.|+|.+ |-..++|..+.++++.+++.+|- .++.+-++-+. -...-+..+ ++|+++|..++.-+..
T Consensus 74 i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~--~~~e~L~~l~~~GvnrisiGvQS~~~------ 145 (394)
T PRK08898 74 VHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGT--FEAEKFAQFRASGVNRLSIGIQSFND------ 145 (394)
T ss_pred eeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCC--CCHHHHHHHHHcCCCeEEEecccCCH------
Confidence 67999998 66888999999999999999863 35655554222 123445555 6788888866653331
Q ss_pred ccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC
Q psy12516 87 ASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG 166 (327)
Q Consensus 87 ~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~ 166 (327)
+++..+. . .-+ .+.+.+.++.+++.+..+.+.+ ++|-|..
T Consensus 146 --------~~L~~l~---R----------------------~~~----~~~~~~~i~~~~~~~~~v~~dl--I~GlPgq- 185 (394)
T PRK08898 146 --------AHLKALG---R----------------------IHD----GAEARAAIEIAAKHFDNFNLDL--MYALPGQ- 185 (394)
T ss_pred --------HHHHHhC---C----------------------CCC----HHHHHHHHHHHHHhCCceEEEE--EcCCCCC-
Confidence 2221110 0 001 2234445566666555555444 4555542
Q ss_pred CCChHHHHHHHHHHHHcCcCEEE
Q psy12516 167 AVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
+.+.+.+-.+.+.+.+++.|.
T Consensus 186 --t~~~~~~~l~~~~~l~p~~is 206 (394)
T PRK08898 186 --TLDEALADVETALAFGPPHLS 206 (394)
T ss_pred --CHHHHHHHHHHHHhcCCCEEE
Confidence 566777777888888887654
|
|
| >PRK09358 adenosine deaminase; Provisional | Back alignment and domain information |
|---|
Probab=93.31 E-value=5.7 Score=37.36 Aligned_cols=194 Identities=16% Similarity=0.139 Sum_probs=100.4
Q ss_pred HHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEec---c---cCCCCC-C---CCCC----ccCCCcHHHHHHHh
Q psy12516 36 VLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSS---I---AGLGGC-P---YARG----ASGNVATEDLVYML 100 (327)
Q Consensus 36 ~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~---~---~glg~~-p---~~~~----~~gn~~~e~v~~~l 100 (327)
+.+.+| +++.|.|=+..+....+.+-. +.|+..-..+ + .+.+.+ + |... ..-....|++....
T Consensus 6 ~~~~lp--K~eLH~Hl~Gs~~~~~l~~l~~~~~~~~p~~~~~~~~~~r~~~~~~~l~~~l~~~~~~~~~~~t~ed~~~~~ 83 (340)
T PRK09358 6 IIRSLP--KAELHLHLDGSLRPETILELARRNGIALPATDVEELPWVRAAYDFRDLQSFLDKYDAGVAVLQTEEDLRRLA 83 (340)
T ss_pred HHhcCC--ceeEEecccCCCCHHHHHHHHHHcCCCCCCCCHHHHhhhcccccCCCHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 445566 688999988888777776666 5676643211 1 333332 1 1000 00112334443322
Q ss_pred h---hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH-HHcCCeEEEEEeeeccCCCCCCCChHHHHHH
Q psy12516 101 E---GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA-LTNGIRVRGYISCVVGCPYEGAVPPHNVTRV 176 (327)
Q Consensus 101 ~---~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a-~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~ 176 (327)
. ...++.|+..+.+... .. .....+.+.++.++.+.+.++.+ ++.|+++...++.. . ..+++...+.
T Consensus 84 ~~~~~e~~~~Gvty~E~~~~--p~-~~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~---r---~~~~~~~~~~ 154 (340)
T PRK09358 84 FEYLEDAAADGVVYAEIRFD--PQ-LHTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFM---R---HFGEEAAARE 154 (340)
T ss_pred HHHHHHHHHcCCEEEEEEeC--hh-hhhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEec---C---CCCHHHHHHH
Confidence 2 2345566654433321 11 11123667788888777776654 55688876554421 0 1234444445
Q ss_pred HHHHHH--cCcCEE--EecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCcee
Q psy12516 177 ATALYK--MGCYEI--SLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVF 244 (327)
Q Consensus 177 ~~~~~~--~g~~~i--~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~v 244 (327)
.+.+.+ .+...+ .++..-...+|..+.+.+...++. ++++.+|+....+ ..+...+++ .|++++
T Consensus 155 ~~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~--g~~~~~H~~E~~~--~~~~~~al~~lg~~ri 223 (340)
T PRK09358 155 LEALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDA--GLRLTAHAGEAGG--PESIWEALDELGAERI 223 (340)
T ss_pred HHHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHC--CCCeEEcCCCCCc--hhHHHHHHHHcCCccc
Confidence 444444 332333 332121224667777777776653 4678888876443 234556666 788764
|
|
| >COG2089 SpsE Sialic acid synthase [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.27 E-value=2.2 Score=39.72 Aligned_cols=95 Identities=15% Similarity=0.128 Sum_probs=69.0
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHH--HHHHHHhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLM--LEDVLTVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~--~~~~~~~~~ 214 (327)
-.++++++.+.|..+- ++ + +-.+.+++.+..+.+.+.|. +.+-+.-|+..-+|.+-..+ +..+++.+
T Consensus 136 ~~plik~iA~~~kPiI--lS--T-----Gma~~~ei~~av~~~r~~g~~~i~LLhC~s~YPap~ed~NL~~i~~l~~~F- 205 (347)
T COG2089 136 DLPLIKYIAKKGKPII--LS--T-----GMATIEEIEEAVAILRENGNPDIALLHCTSAYPAPFEDVNLKAIPKLAEAF- 205 (347)
T ss_pred ChHHHHHHHhcCCCEE--EE--c-----ccccHHHHHHHHHHHHhcCCCCeEEEEecCCCCCCHHHhhHHHHHHHHHHh-
Confidence 3466777777777653 22 2 23677889999999999986 47778888888888765554 66777888
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
+..+++-=| -++.+..++|+..||..|+
T Consensus 206 n~~vGlSDH---T~g~~a~l~AvALGA~viE 233 (347)
T COG2089 206 NAIVGLSDH---TLGILAPLAAVALGASVIE 233 (347)
T ss_pred CCccccccC---ccchhHHHHHHHhccccee
Confidence 457887544 2337889999999998764
|
|
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=93.16 E-value=5.3 Score=39.56 Aligned_cols=68 Identities=15% Similarity=0.203 Sum_probs=47.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
.+.+.+.++.+++.|+.+.+.++ +|.|.+ +.+.+.+..+.+.+.+++.+.+ ..++|.-=..+...+++
T Consensus 322 ~~~~~~~i~~~~~~Gi~v~~~~I--iGlPge---t~e~~~~ti~~~~~l~~~~~~~----~~l~P~PGT~l~~~~~~ 389 (472)
T TIGR03471 322 VEIARRFTRDCHKLGIKVHGTFI--LGLPGE---TRETIRKTIDFAKELNPHTIQV----SLAAPYPGTELYDQAKQ 389 (472)
T ss_pred HHHHHHHHHHHHHCCCeEEEEEE--EeCCCC---CHHHHHHHHHHHHhcCCCceee----eecccCCCcHHHHHHHH
Confidence 45577788999999999876655 566654 5778888888888888886643 44566544455555554
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=93.10 E-value=5 Score=37.70 Aligned_cols=94 Identities=18% Similarity=0.211 Sum_probs=54.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCC-eeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~-~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg 79 (327)
++++++.+.|+..|.|..---.+. .++.++++.+++. +.. .+.+ .+.|.-+......+ ++|++.+.+|+.++.
T Consensus 52 ~li~~~~~~Gv~~I~~tGGEPllr-~dl~~li~~i~~~-~~l~~i~i---tTNG~ll~~~~~~L~~aGl~~v~ISlDs~~ 126 (329)
T PRK13361 52 WLAQAFTELGVRKIRLTGGEPLVR-RGCDQLVARLGKL-PGLEELSL---TTNGSRLARFAAELADAGLKRLNISLDTLR 126 (329)
T ss_pred HHHHHHHHCCCCEEEEECcCCCcc-ccHHHHHHHHHhC-CCCceEEE---EeChhHHHHHHHHHHHcCCCeEEEEeccCC
Confidence 345667788999999964222222 2455666666553 222 3444 34466566655555 689999999998876
Q ss_pred CCCCCCCccCCCcHHHHHHHhh
Q psy12516 80 GCPYARGASGNVATEDLVYMLE 101 (327)
Q Consensus 80 ~~p~~~~~~gn~~~e~v~~~l~ 101 (327)
..-|...+ +....+.++..++
T Consensus 127 ~e~~~~i~-~~g~~~~vl~~i~ 147 (329)
T PRK13361 127 PELFAALT-RNGRLERVIAGID 147 (329)
T ss_pred HHHhhhhc-CCCCHHHHHHHHH
Confidence 53343322 2334555555443
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=93.07 E-value=2.4 Score=39.33 Aligned_cols=78 Identities=18% Similarity=0.116 Sum_probs=57.0
Q ss_pred CChHHHHHHHHHHHHcC-cCEEEe-----cCCC-Cc---cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMG-CYEISL-----GDTI-GV---GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g-~~~i~l-----~Dt~-G~---~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
.+++.+.+.++++.++| +|.|.| .... |. ..|+.+.++++.+++.. +.||.+..--+.--...-+..+.
T Consensus 101 ~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~ 179 (301)
T PRK07259 101 STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAE 179 (301)
T ss_pred CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHH
Confidence 46889999999999999 998877 1111 32 35899999999999887 46888876544433344455677
Q ss_pred HhcCceeee
Q psy12516 238 EFGISVFDS 246 (327)
Q Consensus 238 ~~G~~~vd~ 246 (327)
++|++.|+.
T Consensus 180 ~~G~d~i~~ 188 (301)
T PRK07259 180 EAGADGLSL 188 (301)
T ss_pred HcCCCEEEE
Confidence 899998764
|
|
| >PRK08207 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.98 E-value=5.9 Score=39.48 Aligned_cols=52 Identities=15% Similarity=0.158 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHcCC-eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 135 LERFSEVVSTALTNGI-RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi-~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
.+.+.+.++.+++.|+ .+...++ +|-|. -+.+.+.+..+.+.+.+++.+.+-
T Consensus 304 ~e~v~~ai~~ar~~Gf~~In~DLI--~GLPg---Et~ed~~~tl~~l~~L~pd~isv~ 356 (488)
T PRK08207 304 VEDIIEKFHLAREMGFDNINMDLI--IGLPG---EGLEEVKHTLEEIEKLNPESLTVH 356 (488)
T ss_pred HHHHHHHHHHHHhCCCCeEEEEEE--eCCCC---CCHHHHHHHHHHHHhcCcCEEEEE
Confidence 4567778889999999 5554444 56564 367888899999999999876653
|
|
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=92.94 E-value=1.7 Score=41.11 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=77.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----------CCCChHHHHHHHHHHHH-cCcCE--EEecCCCCc
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----------GAVPPHNVTRVATALYK-MGCYE--ISLGDTIGV 196 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----------~r~~~e~l~~~~~~~~~-~g~~~--i~l~Dt~G~ 196 (327)
+.+|.++..++++++|+..|+.|++-+...-|.++. ..++|++..+++++.-. .|+|. +.+.-..|.
T Consensus 135 p~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~ 214 (345)
T cd00946 135 PLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGV 214 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcccccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccC
Confidence 567889999999999999999999888775444332 14688888877776532 37774 455556665
Q ss_pred cC---HHHHHHHHHHH----HHhcC-----CCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 197 GT---PGTMRLMLEDV----LTVIP-----ADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 197 ~~---P~~~~~~~~~~----~~~~~-----~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
-. |.==.++++.+ ++..+ ++||.+|. --|..-.....|++.|+.-|..
T Consensus 215 Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHG--gSG~~~e~i~kai~~GI~KiNi 274 (345)
T cd00946 215 YKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHG--GSGSTKEEIREAISYGVVKMNI 274 (345)
T ss_pred CCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeC--CCCCCHHHHHHHHHcCCeeEEe
Confidence 42 33223344444 55553 35666665 4477788889999999887643
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=92.94 E-value=1 Score=42.60 Aligned_cols=79 Identities=14% Similarity=0.161 Sum_probs=59.4
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCC-CCccCHHHHHHHHHHHHHhcCCCeEEE-------eecCCcCcHHHHHHHHH-
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLTVIPADRLAV-------HCHDTYGQALANILTAM- 237 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~~~~~~~~~~~~~~~~~l~~-------H~Hn~~g~a~an~l~a~- 237 (327)
+.++|.+.+.++.+.+.|+++|.|.+- .-...++.+.++++.+++..|++.+.. |.+.+.|+-....+..+
T Consensus 69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~~Lk 148 (343)
T TIGR03551 69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALKRLK 148 (343)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 468999999999999999999999832 213467778999999999877544322 33567787777666665
Q ss_pred HhcCceee
Q psy12516 238 EFGISVFD 245 (327)
Q Consensus 238 ~~G~~~vd 245 (327)
++|++.+.
T Consensus 149 eAGl~~i~ 156 (343)
T TIGR03551 149 EAGLDSMP 156 (343)
T ss_pred HhCccccc
Confidence 77999876
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=92.85 E-value=1.9 Score=37.13 Aligned_cols=113 Identities=19% Similarity=0.279 Sum_probs=65.5
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ 228 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~ 228 (327)
.+.+-+.+..-+...+. ..+|- .+-++.+.+.|+|.|.+ |-+....|..+.++++.+++++ ..+-.-+ .
T Consensus 32 ~lPIIGi~K~~y~~~~V-~ITPT--~~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADi-s---- 100 (192)
T PF04131_consen 32 DLPIIGIIKRDYPDSDV-YITPT--LKEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADI-S---- 100 (192)
T ss_dssp -S-EEEE-B-SBTTSS---BS-S--HHHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE--S----
T ss_pred CCCEEEEEeccCCCCCe-EECCC--HHHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeec-C----
Confidence 56666655542211111 22332 24456778899999987 6777888899999999999987 2332222 1
Q ss_pred HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 229 ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 229 a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
-+...+.|.++|+|.|-+|+.|+=+ .. .+..|=-+++..|.+.+
T Consensus 101 t~ee~~~A~~~G~D~I~TTLsGYT~--~t---~~~~pD~~lv~~l~~~~ 144 (192)
T PF04131_consen 101 TLEEAINAAELGFDIIGTTLSGYTP--YT---KGDGPDFELVRELVQAD 144 (192)
T ss_dssp SHHHHHHHHHTT-SEEE-TTTTSST--TS---TTSSHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHcCCCEEEcccccCCC--CC---CCCCCCHHHHHHHHhCC
Confidence 1578899999999999999999875 22 22445555666665543
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II | Back alignment and domain information |
|---|
Probab=92.83 E-value=6.1 Score=37.21 Aligned_cols=171 Identities=15% Similarity=0.151 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhhcCCCeeEEEecCccch--HHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhh
Q psy12516 27 GTMRLMLEDVLTVIPADRLAVHCHDTYGQ--ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKS 104 (327)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~H~h~~~g~--~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~ 104 (327)
..+..++..+.+.+. +|+.+|. |-|. .+..+..|+++|-.+++.+ +.++-+-++
T Consensus 71 ~~~~~~~~~~A~~~~-VPV~lHL--DH~~~~~~e~i~~ai~~G~~~~~~~---------------~~~~FsSVM------ 126 (340)
T cd00453 71 ISGAHHVHQMAEHYG-VPVILHT--DHCAKKLLPWIDGLLDAGEKHFAAT---------------GKPLFSSHM------ 126 (340)
T ss_pred HHHHHHHHHHHHHCC-CCEEEEc--CCCCCCCHHHHHHHHHcCCcccccc---------------CCCCceeEE------
Confidence 345555555555553 7777765 3333 5678888888886554421 122110000
Q ss_pred cccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----------CCCChHHHH
Q psy12516 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----------GAVPPHNVT 174 (327)
Q Consensus 105 ~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----------~r~~~e~l~ 174 (327)
+|. | ..+.+|+++..++++++|+..|+.|++-+...-|.++. ..++||+..
T Consensus 127 ----iDg-------S--------~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~~~~~~~yT~Peea~ 187 (340)
T cd00453 127 ----IDL-------S--------EESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVD 187 (340)
T ss_pred ----ecC-------C--------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCcccccccccccCCCHHHHH
Confidence 111 1 12345668899999999999999999888875444432 034677776
Q ss_pred HHHHHHHHcC----cCE--EEecCCCCcc---CHHHHHHHHHHHHHhc--------CCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 175 RVATALYKMG----CYE--ISLGDTIGVG---TPGTMRLMLEDVLTVI--------PADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 175 ~~~~~~~~~g----~~~--i~l~Dt~G~~---~P~~~~~~~~~~~~~~--------~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
++++ +.| +|. +.+.-..|.- .|.==.++++.+++.+ +++||.+|.= -|..-.....++
T Consensus 188 ~Fv~---~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGg--SG~~~e~~~~ai 262 (340)
T cd00453 188 YAYT---ELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGG--SGSTAQEIKDSV 262 (340)
T ss_pred HHHH---HhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCceEEeCC--CCCCHHHHHHHH
Confidence 6665 445 664 4444455653 2322233455555544 2567777654 455566778888
Q ss_pred HhcCceee
Q psy12516 238 EFGISVFD 245 (327)
Q Consensus 238 ~~G~~~vd 245 (327)
..|+..|.
T Consensus 263 ~~Gi~KiN 270 (340)
T cd00453 263 SYGVVKMN 270 (340)
T ss_pred HcCCeEEE
Confidence 89887654
|
This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=92.74 E-value=2.4 Score=39.45 Aligned_cols=82 Identities=12% Similarity=0.049 Sum_probs=67.0
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhc
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFG 240 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G 240 (327)
+++.|.+.+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+++..+ .+|+-++.-.+..-++..+..|.++|
T Consensus 22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~G 101 (303)
T PRK03620 22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAG 101 (303)
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999999 5889999999988887764 36777776545556677777788999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 102 adav~~ 107 (303)
T PRK03620 102 ADGILL 107 (303)
T ss_pred CCEEEE
Confidence 998743
|
|
| >PLN02417 dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=92.72 E-value=2.3 Score=39.12 Aligned_cols=100 Identities=13% Similarity=0.194 Sum_probs=78.0
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+..++ +++-.+. +++.--++..+..|.++|
T Consensus 17 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~G 96 (280)
T PLN02417 17 GRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAVG 96 (280)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999 57888888888887777654 6777766 567778888899999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+=..- |+ ...++-++++.+++.
T Consensus 97 adav~~~~------P~----y~~~~~~~i~~~f~~ 121 (280)
T PLN02417 97 MHAALHIN------PY----YGKTSQEGLIKHFET 121 (280)
T ss_pred CCEEEEcC------Cc----cCCCCHHHHHHHHHH
Confidence 99765532 22 123455777776654
|
|
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=92.72 E-value=5.6 Score=36.66 Aligned_cols=96 Identities=14% Similarity=0.063 Sum_probs=66.7
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc--cC-HHHHHHHHHHHHHhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV--GT-PGTMRLMLEDVLTVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~--~~-P~~~~~~~~~~~~~~~ 214 (327)
++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+...|.-...... .. ...+...+..+.+..+
T Consensus 4 ~~~~l~~A~~~~yav~A-----fn-----~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~ 73 (282)
T TIGR01859 4 GKEILQKAKKEGYAVGA-----FN-----FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS 73 (282)
T ss_pred HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC
Confidence 56778889999987742 32 257889999999999998876554332222 12 3456677777777765
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.+|+.+|. |-|.-......|+++|++.|-
T Consensus 74 ~vpv~lhl--DH~~~~e~i~~ai~~Gf~sVm 102 (282)
T TIGR01859 74 IVPVALHL--DHGSSYESCIKAIKAGFSSVM 102 (282)
T ss_pred CCeEEEEC--CCCCCHHHHHHHHHcCCCEEE
Confidence 36888884 444457888999999998753
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=92.71 E-value=7.3 Score=35.04 Aligned_cols=190 Identities=14% Similarity=0.099 Sum_probs=96.4
Q ss_pred HHHHHHcCcCEEEecCCc----------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccch---HHHHHHHHHHcCCcE
Q psy12516 4 ASALYKMGCYEISLGDTI----------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ---ALANILTAMEFGISV 70 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~----------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~---~~~~~~~a~~aG~~~ 70 (327)
++.+.+.|.+.|.+.|.. +..+..++...++.+.+... .|+....=.-+|. ...++...+++|+.-
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~-~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~g 100 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVD-LPVIADADTGYGNALNVARTVRELEEAGAAG 100 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhcc-CCEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 566778899999998876 45556667777777766553 4444443333332 222223333566665
Q ss_pred EEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc-C
Q psy12516 71 FDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN-G 149 (327)
Q Consensus 71 id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~-G 149 (327)
+..-=.-... +.|+.. .+.-.+.+|..++++.+.+.+.+. .
T Consensus 101 v~iED~~~~k------~~g~~~--------------------------------~~~~~~~ee~~~ki~aa~~a~~~~~~ 142 (243)
T cd00377 101 IHIEDQVGPK------KCGHHG--------------------------------GKVLVPIEEFVAKIKAARDARDDLPD 142 (243)
T ss_pred EEEecCCCCc------cccCCC--------------------------------CCeecCHHHHHHHHHHHHHHHhccCC
Confidence 5421110000 111110 000113344455556555555442 3
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA 229 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a 229 (327)
+-+.+- .+++ ..+....++.++.++...++|+|.+.+. |..+++++.++ .+..+ .|+-+.......
T Consensus 143 ~~IiAR-TDa~---~~~~~~~~eai~Ra~ay~~AGAD~v~v~---~~~~~~~~~~~----~~~~~-~Pl~~~~~~~~~-- 208 (243)
T cd00377 143 FVIIAR-TDAL---LAGEEGLDEAIERAKAYAEAGADGIFVE---GLKDPEEIRAF----AEAPD-VPLNVNMTPGGN-- 208 (243)
T ss_pred eEEEEE-cCch---hccCCCHHHHHHHHHHHHHcCCCEEEeC---CCCCHHHHHHH----HhcCC-CCEEEEecCCCC--
Confidence 322210 0011 0112467888899999999999998874 22356555444 44444 577765443322
Q ss_pred HHHHHHHHHhcCceeee
Q psy12516 230 LANILTAMEFGISVFDS 246 (327)
Q Consensus 230 ~an~l~a~~~G~~~vd~ 246 (327)
.-+.-...+.|++++-.
T Consensus 209 ~~~~~~l~~lG~~~v~~ 225 (243)
T cd00377 209 LLTVAELAELGVRRVSY 225 (243)
T ss_pred CCCHHHHHHCCCeEEEE
Confidence 12233344567776653
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=92.65 E-value=6.1 Score=33.99 Aligned_cols=88 Identities=18% Similarity=0.138 Sum_probs=52.4
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe-c----CCCCccCHHHHHHHHHHHHHh
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL-G----DTIGVGTPGTMRLMLEDVLTV 212 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l-~----Dt~G~~~P~~~~~~~~~~~~~ 212 (327)
..++++++++.|+++...+.. ..++++..+ +.+.|+|.+.+ . .+.| +....+.++.+++.
T Consensus 92 ~~~~i~~~~~~g~~~~v~~~~--------~~t~~e~~~----~~~~~~d~v~~~~~~~~~~~~---~~~~~~~i~~~~~~ 156 (202)
T cd04726 92 IKKAVKAAKKYGKEVQVDLIG--------VEDPEKRAK----LLKLGVDIVILHRGIDAQAAG---GWWPEDDLKKVKKL 156 (202)
T ss_pred HHHHHHHHHHcCCeEEEEEeC--------CCCHHHHHH----HHHCCCCEEEEcCcccccccC---CCCCHHHHHHHHhh
Confidence 456778888889877532121 234444432 55678898776 2 2222 12233445555543
Q ss_pred cCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 213 IPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
++.++.. +.|-...|...++++|++.+=
T Consensus 157 -~~~~i~~----~GGI~~~~i~~~~~~Gad~vv 184 (202)
T cd04726 157 -LGVKVAV----AGGITPDTLPEFKKAGADIVI 184 (202)
T ss_pred -cCCCEEE----ECCcCHHHHHHHHhcCCCEEE
Confidence 3445555 346667899999999999753
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=92.63 E-value=7 Score=34.70 Aligned_cols=96 Identities=15% Similarity=0.052 Sum_probs=56.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
..+++++.|+.|+++...+. | .++.+.+..+... +|.|.+ +.-.|...-..+.+.++.+++..
T Consensus 99 ~~~~l~~Ir~~g~k~Glaln-----P---~T~~~~i~~~l~~-----vD~VlvMtV~PGf~GQ~fi~~~l~KI~~l~~~~ 165 (223)
T PRK08745 99 VHRTIQLIKSHGCQAGLVLN-----P---ATPVDILDWVLPE-----LDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKI 165 (223)
T ss_pred HHHHHHHHHHCCCceeEEeC-----C---CCCHHHHHHHHhh-----cCEEEEEEECCCCCCccccHHHHHHHHHHHHHH
Confidence 34566777888887765433 2 2456666555442 232221 23344444444555566666654
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+...+.+..--|-|....|.-...++|++.+=+
T Consensus 166 ~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~ 198 (223)
T PRK08745 166 DALGKPIRLEIDGGVKADNIGAIAAAGADTFVA 198 (223)
T ss_pred HhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEE
Confidence 432233444558899999999999999987543
|
|
| >PRK12928 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.61 E-value=6.5 Score=36.39 Aligned_cols=50 Identities=16% Similarity=0.270 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcC--CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTNG--IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~G--i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.++..++++.+++.| +.+...++.-+| =+.+++.+..+.+.+.+++.+.+
T Consensus 187 ~e~~le~l~~ak~~gp~i~~~s~iIvG~G------ET~ed~~etl~~Lrel~~d~v~i 238 (290)
T PRK12928 187 YQRSLDLLARAKELAPDIPTKSGLMLGLG------ETEDEVIETLRDLRAVGCDRLTI 238 (290)
T ss_pred HHHHHHHHHHHHHhCCCceecccEEEeCC------CCHHHHHHHHHHHHhcCCCEEEE
Confidence 455677888999988 776655554332 25688899999999999998876
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=92.60 E-value=3.1 Score=37.12 Aligned_cols=110 Identities=17% Similarity=0.234 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC-CCccCHHHHHHHHHHHHH
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~~~~~~~~~~~ 211 (327)
+.++.+..+++.|++.|+.+..- .+..+.+.....+++.+...++.+.++|+|.|-..-+ ....++.++.. +..+.+
T Consensus 109 ~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~vKt~tg~~~~~t~~~~~~-~~~~~~ 186 (236)
T PF01791_consen 109 EVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADFVKTSTGKPVGATPEDVEL-MRKAVE 186 (236)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SEEEEE-SSSSCSHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCEEEecCCccccccHHHHHH-HHHHHH
Confidence 34777888999999999987533 3222111112235667899999999999998776544 22344455554 444444
Q ss_pred hcCCCe----EEEee---cCCcCcHHHHHHHHHHhcCceee
Q psy12516 212 VIPADR----LAVHC---HDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 212 ~~~~~~----l~~H~---Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.++- | +-+=. +.++--.+..++..+++|++++=
T Consensus 187 ~~~~-p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G 226 (236)
T PF01791_consen 187 AAPV-PGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIG 226 (236)
T ss_dssp THSS-TTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEE
T ss_pred hcCC-CcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHH
Confidence 3331 2 22211 11111235666777899997643
|
|
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.44 E-value=7.3 Score=34.42 Aligned_cols=96 Identities=16% Similarity=0.134 Sum_probs=62.3
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
..+++++.|+.|.++...+. | .++.+.+..+...+ |-|.+ +.-.|...-.++-+.++.+|+..
T Consensus 98 ~~r~i~~Ik~~G~kaGv~ln-----P---~Tp~~~i~~~l~~v-----D~VllMsVnPGfgGQ~Fi~~~l~Ki~~lr~~~ 164 (220)
T COG0036 98 IHRTIQLIKELGVKAGLVLN-----P---ATPLEALEPVLDDV-----DLVLLMSVNPGFGGQKFIPEVLEKIRELRAMI 164 (220)
T ss_pred HHHHHHHHHHcCCeEEEEEC-----C---CCCHHHHHHHHhhC-----CEEEEEeECCCCcccccCHHHHHHHHHHHHHh
Confidence 55667888888988765433 3 25556666555433 43332 34455555556777788888877
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCcee-eec
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVF-DSS 247 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v-d~s 247 (327)
++.. .+-.--|-|.-..|+-.+.++|++.+ -+|
T Consensus 165 ~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGS 198 (220)
T COG0036 165 DERL-DILIEVDGGINLETIKQLAAAGADVFVAGS 198 (220)
T ss_pred cccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence 6421 33334488999999999999999985 444
|
|
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.43 E-value=2.5 Score=38.98 Aligned_cols=83 Identities=13% Similarity=0.073 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.++++.+.+.|++.|.+.-|+| .+++++-.++++.+++..++ ++|-+|. +++..-++..+..|.++|
T Consensus 17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 96 (292)
T PRK03170 17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG 96 (292)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999 58889988899888887754 6777766 457788888889999999
Q ss_pred Cceeeecc
Q psy12516 241 ISVFDSSI 248 (327)
Q Consensus 241 ~~~vd~s~ 248 (327)
++.+=..-
T Consensus 97 ~d~v~~~p 104 (292)
T PRK03170 97 ADGALVVT 104 (292)
T ss_pred CCEEEECC
Confidence 99876543
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=92.42 E-value=5.1 Score=39.50 Aligned_cols=67 Identities=16% Similarity=0.145 Sum_probs=51.2
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
+.++.+.+.|+|.|.+ |++ |. + ..+.+.++++++.+|++++..= .......+..++++|++.|.+++
T Consensus 227 ~r~~~L~~aG~d~I~v-d~a~g~-~-~~~~~~i~~i~~~~~~~~vi~G----~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 227 ERAEALVKAGVDVIVI-DSSHGH-S-IYVIDSIKEIKKTYPDLDIIAG----NVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred HHHHHHHHhCCCEEEE-ECCCCc-H-hHHHHHHHHHHHhCCCCCEEEE----eCCCHHHHHHHHHhCCCEEEECC
Confidence 5678899999998887 554 43 2 3577789999999888887772 23345677888899999999865
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=92.41 E-value=8.1 Score=34.87 Aligned_cols=96 Identities=17% Similarity=0.133 Sum_probs=60.7
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHH-HHHHHHHHhc-Ccee
Q psy12516 169 PPHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL-ANILTAMEFG-ISVF 244 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~-an~l~a~~~G-~~~v 244 (327)
......++++.+.+.|++.|.+ -+..|.+...+ .++++.+++..+ +|+.... |... .-...++..| ++.|
T Consensus 153 ~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g~~-~~~~~~i~~~~~-ipvia~G----Gi~s~~di~~~~~~g~~dgv 226 (254)
T TIGR00735 153 TGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSGYD-LELTKAVSEAVK-IPVIASG----GAGKPEHFYEAFTKGKADAA 226 (254)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCCCC-HHHHHHHHHhCC-CCEEEeC----CCCCHHHHHHHHHcCCccee
Confidence 3456778889999999999888 55555443333 346777777654 4666543 2222 2334455556 7764
Q ss_pred -eeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 245 -DSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 245 -d~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
-++.. -.|..+++++...|++.||.+
T Consensus 227 ~~g~a~----------~~~~~~~~~~~~~~~~~gi~~ 253 (254)
T TIGR00735 227 LAASVF----------HYREITIGEVKEYLAERGIPV 253 (254)
T ss_pred eEhHHH----------hCCCCCHHHHHHHHHHCCCcc
Confidence 22222 135688999999999988865
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=92.40 E-value=7.9 Score=34.74 Aligned_cols=92 Identities=17% Similarity=0.306 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-cCEEEecCCCCccC--HHHHHHHHHHHHHh
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-CYEISLGDTIGVGT--PGTMRLMLEDVLTV 212 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G~~~--P~~~~~~~~~~~~~ 212 (327)
+...++++.+++.|++....+. | .++.+.+..+.+.. .| +..+.+.-.+|.-+ +..+.+.++.+|+.
T Consensus 116 ee~~~~~~~~~~~g~~~i~~i~-----P---~T~~~~i~~i~~~~--~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~ 185 (242)
T cd04724 116 EEAEEFREAAKEYGLDLIFLVA-----P---TTPDERIKKIAELA--SGFIYYVSRTGVTGARTELPDDLKELIKRIRKY 185 (242)
T ss_pred HHHHHHHHHHHHcCCcEEEEeC-----C---CCCHHHHHHHHhhC--CCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc
Confidence 4567788999999998653222 2 13444444433321 12 22333455565433 56788899999986
Q ss_pred cCCCeEEEeecCCcCcHHH-HHHHHHHhcCce
Q psy12516 213 IPADRLAVHCHDTYGQALA-NILTAMEFGISV 243 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~a-n~l~a~~~G~~~ 243 (327)
.+.|+.+ +.|.... ++-...++ +|.
T Consensus 186 -~~~pI~v----ggGI~~~e~~~~~~~~-ADg 211 (242)
T cd04724 186 -TDLPIAV----GFGISTPEQAAEVAKY-ADG 211 (242)
T ss_pred -CCCcEEE----EccCCCHHHHHHHHcc-CCE
Confidence 3456666 3355534 55555555 554
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.39 E-value=9.9 Score=35.85 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=96.3
Q ss_pred cccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 105 MQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 105 ~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
.+.|+|...- +....+.+.+..-..+. +.-.++++.+++.|+++..-...-.| =+.++-.+....+.+.
T Consensus 151 ~~aGvd~ynhNLeTs~~~y~~I~tt~t~----edR~~tl~~vk~~Gi~vcsGgI~GlG------Es~eDri~~l~~L~~l 220 (335)
T COG0502 151 ADAGVDRYNHNLETSPEFYENIITTRTY----EDRLNTLENVREAGIEVCSGGIVGLG------ETVEDRAELLLELANL 220 (335)
T ss_pred HHcChhheecccccCHHHHcccCCCCCH----HHHHHHHHHHHHcCCccccceEecCC------CCHHHHHHHHHHHHhC
Confidence 3445554432 22333445555555554 44566788999999998643322122 2456666777778877
Q ss_pred C-cCEEEe------cCC----CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 184 G-CYEISL------GDT----IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 184 g-~~~i~l------~Dt----~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
. ++.|-| ++| .-.++|.+.-+.|+..|-.+|...|-+- =..-.+.-...--++.+|++-|=++. .+.
T Consensus 221 ~~pdsVPIn~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s-~gr~~~~~~~q~~~~~aGansi~~g~-~~l 298 (335)
T COG0502 221 PTPDSVPINFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLS-AGRETMLPELQALAFMAGANSIFVGD-KYL 298 (335)
T ss_pred CCCCeeeeeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEcc-CCcccccHHHHHHHHHhccceeeecc-eEe
Confidence 7 776543 122 2346678888899999988897544432 12223444456677889998765544 122
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCCCCCC
Q psy12516 253 GCPYARGASGNVATEDLVYMLEGMGIETGA 282 (327)
Q Consensus 253 ~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~ 282 (327)
-+.|.+.|+-...++.+|.....
T Consensus 299 -------tt~~~~~e~D~~~l~~lgl~~e~ 321 (335)
T COG0502 299 -------TTPGPDEDKDLELLKDLGLEPEL 321 (335)
T ss_pred -------ecCCCCchhHHHHHHHcCCCccc
Confidence 23458888989999988876544
|
|
| >PRK09058 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=5.1 Score=39.46 Aligned_cols=129 Identities=9% Similarity=0.070 Sum_probs=73.5
Q ss_pred CcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
.++.|+|.+=+ -.++|.++.++++.+++.+|- .++.+-++-+. . ....+.++ ++|+.+|..++.-+..
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~-~-t~e~l~~l~~aGvnRiSiGVQSf~d----- 186 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRING-F-DDEKADAALDAGANRFSIGVQSFNT----- 186 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCc-C-CHHHHHHHHHcCCCEEEecCCcCCH-----
Confidence 36788887655 667899999999999998862 34444332111 1 12233333 5777777755543321
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC-CeEEEEEeeeccCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG-IRVRGYISCVVGCPY 164 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G-i~v~~~l~~~~g~~~ 164 (327)
++...+. . ..+ .+.+.+.++.+++.| ..+.+.+ ++|-|.
T Consensus 187 ---------~vLk~lg---R----------------------~~~----~~~~~~~i~~l~~~g~~~v~~Dl--I~GlPg 226 (449)
T PRK09058 187 ---------QVRRRAG---R----------------------KDD----REEVLARLEELVARDRAAVVCDL--IFGLPG 226 (449)
T ss_pred ---------HHHHHhC---C----------------------CCC----HHHHHHHHHHHHhCCCCcEEEEE--EeeCCC
Confidence 1111111 0 001 234555677777777 4455444 355554
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEE
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
. +.+.+.+-.+.+.+.+++.|.
T Consensus 227 q---T~e~~~~~l~~~~~l~~~~is 248 (449)
T PRK09058 227 Q---TPEIWQQDLAIVRDLGLDGVD 248 (449)
T ss_pred C---CHHHHHHHHHHHHhcCCCEEE
Confidence 2 566777777788888877554
|
|
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=92.37 E-value=2.6 Score=38.71 Aligned_cols=83 Identities=14% Similarity=0.116 Sum_probs=68.1
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
++.|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+...+ +++-+|. +++..-++..+..|.++|
T Consensus 14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 93 (285)
T TIGR00674 14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG 93 (285)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999 57888888888888877644 6777776 356677888889999999
Q ss_pred Cceeeecc
Q psy12516 241 ISVFDSSI 248 (327)
Q Consensus 241 ~~~vd~s~ 248 (327)
++.|=..-
T Consensus 94 ad~v~v~p 101 (285)
T TIGR00674 94 ADGFLVVT 101 (285)
T ss_pred CCEEEEcC
Confidence 99876543
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >TIGR00126 deoC deoxyribose-phosphate aldolase | Back alignment and domain information |
|---|
Probab=92.35 E-value=7.4 Score=34.27 Aligned_cols=113 Identities=17% Similarity=0.152 Sum_probs=68.9
Q ss_pred HcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccC---HHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 147 TNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGT---PGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 147 ~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~---P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
..+.++...+.+ |.. ..+.+.-..-++.+.+.|+|.|-+.=-.|.+. -..+.+.++.+++...+.++-+ ..
T Consensus 51 ~~~v~v~tVigF----P~G-~~~~~~K~~E~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKv-Il 124 (211)
T TIGR00126 51 GTEVRICTVVGF----PLG-ASTTDVKLYETKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKV-II 124 (211)
T ss_pred CCCCeEEEEeCC----CCC-CCcHHHHHHHHHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEE-EE
Confidence 456777665554 443 34444444556778889999988887788544 4667777777777655444433 11
Q ss_pred CCcCc----HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 224 DTYGQ----ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 224 n~~g~----a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
.+--+ =.-.+..++++|+|+|-+|-+ .+ .+.++.|++-.+.+
T Consensus 125 E~~~L~~~ei~~a~~ia~eaGADfvKTsTG-f~--------~~gat~~dv~~m~~ 170 (211)
T TIGR00126 125 ETGLLTDEEIRKACEICIDAGADFVKTSTG-FG--------AGGATVEDVRLMRN 170 (211)
T ss_pred ecCCCCHHHHHHHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHH
Confidence 11112 134566788999999998743 22 23467776554444
|
Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria. |
| >PRK08208 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=92.29 E-value=6.7 Score=38.39 Aligned_cols=53 Identities=9% Similarity=-0.016 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHcCCeE-EEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecC
Q psy12516 135 LERFSEVVSTALTNGIRV-RGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v-~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
.+.+.+.++.+++.|+.+ .+.+ ++|-|. -+.+.+.+..+.+.+.+++.|.+-.
T Consensus 176 ~~~~~~ai~~l~~~g~~~i~~dl--I~GlP~---qt~e~~~~~l~~~~~l~~~~is~y~ 229 (430)
T PRK08208 176 RADVHQALEWIRAAGFPILNIDL--IYGIPG---QTHASWMESLDQALVYRPEELFLYP 229 (430)
T ss_pred HHHHHHHHHHHHHcCCCeEEEEe--ecCCCC---CCHHHHHHHHHHHHhCCCCEEEEcc
Confidence 445677788889999874 3333 455554 4778888888999999988666543
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=92.29 E-value=4.9 Score=36.85 Aligned_cols=79 Identities=14% Similarity=0.167 Sum_probs=55.6
Q ss_pred CChHHHHHHHHHHHHcCcCEEEec----CCCC----ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC--cHHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLG----DTIG----VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG--QALANILTAM 237 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~----Dt~G----~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g--~a~an~l~a~ 237 (327)
.+++.+.+.++.+.+.|+|.|.|- .+.+ .-.|..+.++++.+++.. +.||.+-.--... -...-+..+.
T Consensus 108 ~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~ 186 (289)
T cd02810 108 SSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAE 186 (289)
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999999999977662 1111 236889999999999876 4567765443333 2344455567
Q ss_pred HhcCceeeec
Q psy12516 238 EFGISVFDSS 247 (327)
Q Consensus 238 ~~G~~~vd~s 247 (327)
++|++.|.++
T Consensus 187 ~~Gad~i~~~ 196 (289)
T cd02810 187 RAGADGLTAI 196 (289)
T ss_pred HcCCCEEEEE
Confidence 8999998764
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.22 E-value=3.6 Score=38.81 Aligned_cols=79 Identities=13% Similarity=0.028 Sum_probs=54.6
Q ss_pred CChHHHHHHHHHHHHcCcCEEEe---c-----CCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 168 VPPHNVTRVATALYKMGCYEISL---G-----DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l---~-----Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
.+.+++.++++.+.++|+|.|.| + +..|...+..+.++++.+++... +||.+-.--+......-+..+.++
T Consensus 111 ~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~ 189 (334)
T PRK07565 111 SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAA 189 (334)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHc
Confidence 45678889999999999998877 2 33344445668888999998764 577776544333233444556689
Q ss_pred cCceeeec
Q psy12516 240 GISVFDSS 247 (327)
Q Consensus 240 G~~~vd~s 247 (327)
|++.|..+
T Consensus 190 G~dgI~~~ 197 (334)
T PRK07565 190 GADGLVLF 197 (334)
T ss_pred CCCeEEEE
Confidence 99987653
|
|
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.20 E-value=6 Score=38.04 Aligned_cols=131 Identities=13% Similarity=0.077 Sum_probs=75.3
Q ss_pred CcCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
.++.|++.+-+ -.++|.++.++++.+++.+|- .++.+.++-+. -....++++ ++|+.+|..++.-+..
T Consensus 55 ~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~--i~~e~L~~l~~~GvnrislGvQS~~d----- 127 (380)
T PRK09057 55 TLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTS--VEAGRFRGYRAAGVNRVSLGVQALND----- 127 (380)
T ss_pred CcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCc--CCHHHHHHHHHcCCCEEEEecccCCH-----
Confidence 47799998755 667789999999999998763 24444443222 122445555 5788887766654332
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~ 165 (327)
+++..+.+ +-+ .+.+.+.++.+++.+..+.+.++ +|-|.
T Consensus 128 ---------~vL~~l~R-------------------------~~~----~~~~~~ai~~~~~~~~~v~~dli--~GlPg- 166 (380)
T PRK09057 128 ---------ADLRFLGR-------------------------LHS----VAEALAAIDLAREIFPRVSFDLI--YARPG- 166 (380)
T ss_pred ---------HHHHHcCC-------------------------CCC----HHHHHHHHHHHHHhCccEEEEee--cCCCC-
Confidence 12111110 011 23344556666666666655444 45453
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
-+.+.+.+-.+.+.+.+++.|.+-
T Consensus 167 --qt~~~~~~~l~~~~~l~p~~is~y 190 (380)
T PRK09057 167 --QTLAAWRAELKEALSLAADHLSLY 190 (380)
T ss_pred --CCHHHHHHHHHHHHhcCCCeEEee
Confidence 345556666677777777755544
|
|
| >PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed | Back alignment and domain information |
|---|
Probab=92.20 E-value=8.9 Score=34.86 Aligned_cols=219 Identities=15% Similarity=0.095 Sum_probs=103.7
Q ss_pred CeeEEEecCcc-chHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 43 DRLAVHCHDTY-GQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 43 ~~~~~H~h~~~-g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
+++|+-=|... +..+...++.+ ++|.+.||..+...+..+ ...+...++ +..+++...+.|+....+....
T Consensus 8 ~~~~~~~~~~~~~~~~~e~~~~~~~~G~~~iEl~~~~~~~~~----~~~~~~~~~-~~~l~~~l~~~gl~i~~~~~~~-- 80 (283)
T PRK13209 8 IPLGIYEKALPAGECWLEKLAIAKTAGFDFVEMSVDESDERL----ARLDWSREQ-RLALVNALVETGFRVNSMCLSA-- 80 (283)
T ss_pred ccceeecccCCCCCCHHHHHHHHHHcCCCeEEEecCccccch----hccCCCHHH-HHHHHHHHHHcCCceeEEeccc--
Confidence 55666444442 44556565555 899999998765433211 001112222 2333444444554432211000
Q ss_pred HHHHHhhcC----ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCC-CCCCC-------hHHHHHHHHHHHHcCcCEE
Q psy12516 121 MFSKRNINC----TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY-EGAVP-------PHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 121 ~~~~~~l~~----s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~-~~r~~-------~e~l~~~~~~~~~~g~~~i 188 (327)
+....+.. .+++.++.+++.++.|++.|...... . +.+. ..... .+.+.++++.+.+.|+. |
T Consensus 81 -~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~i~~-~---~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~-i 154 (283)
T PRK13209 81 -HRRFPLGSEDDAVRAQALEIMRKAIQLAQDLGIRVIQL-A---GYDVYYEQANNETRRRFIDGLKESVELASRASVT-L 154 (283)
T ss_pred -ccccCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE-C---CccccccccHHHHHHHHHHHHHHHHHHHHHhCCE-E
Confidence 00000111 12345788999999999999985431 1 1110 01111 23455566666677874 2
Q ss_pred Ee--cCCCCccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCc---eeeeccccCCC-CCCCCC
Q psy12516 189 SL--GDTIGVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGIS---VFDSSIAGLGG-CPYARG 259 (327)
Q Consensus 189 ~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~---~vd~s~~G~G~-~p~~~g 259 (327)
.+ -...-..++.++.+++..+.. |.+.+.+ |.+- .+... ..+++...+ +|+..=.--|. ....+|
T Consensus 155 ~iE~~~~~~~~~~~~~~~ll~~v~~--~~lgl~~D~~h~~~-~~~~~---~~~i~~~~~~i~~vHikD~~~~~~~~~~~G 228 (283)
T PRK13209 155 AFEIMDTPFMNSISKALGYAHYLNS--PWFQLYPDIGNLSA-WDNDV---QMELQAGIGHIVAFHVKDTKPGVFKNVPFG 228 (283)
T ss_pred EEeecCCcccCCHHHHHHHHHHhCC--CccceEeccchHHH-hcCCH---HHHHHhCcCcEEEEEeccCCCCCCceeCCC
Confidence 33 222333466666666655431 3222222 2221 11111 223333322 34333111111 012224
Q ss_pred CCCCccHHHHHHHHHhCCCCCC
Q psy12516 260 ASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
.|..+...++..|++.||+..
T Consensus 229 -~G~id~~~i~~~L~~~gy~g~ 249 (283)
T PRK13209 229 -EGVVDFERCFKTLKQSGYCGP 249 (283)
T ss_pred -CCccCHHHHHHHHHHcCCCce
Confidence 689999999999999887643
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=92.12 E-value=3 Score=39.86 Aligned_cols=77 Identities=17% Similarity=0.165 Sum_probs=47.5
Q ss_pred HcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCcc
Q psy12516 9 KMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 88 (327)
Q Consensus 9 ~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~ 88 (327)
.-|.|.++=.=.-++.+|+++.+++..+++..|..+|++-.--..+....... +.++|+|.|- +.|-++ .+
T Consensus 170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~It--IDG~~G------GT 240 (368)
T PF01645_consen 170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFIT--IDGAEG------GT 240 (368)
T ss_dssp -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEEE--EE-TT---------
T ss_pred CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEEE--EeCCCC------CC
Confidence 34677777777778999999999999999999889999988766655443333 6789999865 555555 55
Q ss_pred CCCcHH
Q psy12516 89 GNVATE 94 (327)
Q Consensus 89 gn~~~e 94 (327)
|-.+..
T Consensus 241 GAap~~ 246 (368)
T PF01645_consen 241 GAAPLT 246 (368)
T ss_dssp SSEECC
T ss_pred CCCchh
Confidence 655533
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=92.10 E-value=7.6 Score=33.90 Aligned_cols=169 Identities=19% Similarity=0.200 Sum_probs=0.0
Q ss_pred HHHHHHcCcCEEEecC--CccccCHHHHHHHHHHHHhhcCCCeeEEEecCccc----------hHHHHHHHHHHcCCcEE
Q psy12516 4 ASALYKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG----------QALANILTAMEFGISVF 71 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~D--t~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g----------~~~~~~~~a~~aG~~~i 71 (327)
+..+.+.|+|+|.||+ ..|-.||.. .+++.+++... +|+..-.-...| .=...+..+.++|++-|
T Consensus 13 a~~A~~~GAdRiELc~~l~~GGlTPS~--g~i~~~~~~~~-ipv~vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~ 89 (201)
T PF03932_consen 13 ALAAEAGGADRIELCSNLEVGGLTPSL--GLIRQAREAVD-IPVHVMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGF 89 (201)
T ss_dssp HHHHHHTT-SEEEEEBTGGGT-B---H--HHHHHHHHHTT-SEEEEE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEE
T ss_pred HHHHHHcCCCEEEECCCccCCCcCcCH--HHHHHHHhhcC-CceEEEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCee
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
= ++.|. ..|..+ .+.++++++.++ |.+
T Consensus 90 V--fG~L~-------~dg~iD------------------------------------------~~~~~~Li~~a~--~~~ 116 (201)
T PF03932_consen 90 V--FGALT-------EDGEID------------------------------------------EEALEELIEAAG--GMP 116 (201)
T ss_dssp E--E--BE-------TTSSB-------------------------------------------HHHHHHHHHHHT--TSE
T ss_pred E--EEeEC-------CCCCcC------------------------------------------HHHHHHHHHhcC--CCe
Q ss_pred EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCH-----HHHHHHHHHHHHhcCCCeEEEeecCCc
Q psy12516 152 VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTP-----GTMRLMLEDVLTVIPADRLAVHCHDTY 226 (327)
Q Consensus 152 v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P-----~~~~~~~~~~~~~~~~~~l~~H~Hn~~ 226 (327)
+. |.--++.-.+ ..+..+++.++|+++|. |+|...+ +.+.+++...+..+. +-.+-
T Consensus 117 ~t------FHRAfD~~~d---~~~al~~L~~lG~~rVL---TSGg~~~a~~g~~~L~~lv~~a~~~i~-Im~Gg------ 177 (201)
T PF03932_consen 117 VT------FHRAFDEVPD---PEEALEQLIELGFDRVL---TSGGAPTALEGIENLKELVEQAKGRIE-IMPGG------ 177 (201)
T ss_dssp EE------E-GGGGGSST---HHHHHHHHHHHT-SEEE---ESTTSSSTTTCHHHHHHHHHHHTTSSE-EEEES------
T ss_pred EE------EeCcHHHhCC---HHHHHHHHHhcCCCEEE---CCCCCCCHHHHHHHHHHHHHHcCCCcE-EEecC------
Q ss_pred CcHHHHHHHHHH-hcCceeeec
Q psy12516 227 GQALANILTAME-FGISVFDSS 247 (327)
Q Consensus 227 g~a~an~l~a~~-~G~~~vd~s 247 (327)
|.-..|.-.-++ .|+.+|+.|
T Consensus 178 Gv~~~nv~~l~~~tg~~~~H~s 199 (201)
T PF03932_consen 178 GVRAENVPELVEETGVREIHGS 199 (201)
T ss_dssp S--TTTHHHHHHHHT-SEEEET
T ss_pred CCCHHHHHHHHHhhCCeEEeec
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=92.04 E-value=9 Score=34.97 Aligned_cols=156 Identities=18% Similarity=0.254 Sum_probs=83.0
Q ss_pred HHHHHHcCcCEEEecCCcc----------ccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEe
Q psy12516 4 ASALYKMGCYEISLGDTIG----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 73 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~G----------~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~ 73 (327)
++.+.++|+|.|...|+.+ ..+..++-..++.+.+..+.-. -..|.
T Consensus 28 Arl~e~aG~d~i~vGds~~~~~lG~~Dt~~vtl~em~~h~~~V~r~~~~p~------------------------vvaD~ 83 (264)
T PRK00311 28 AKLFDEAGVDVILVGDSLGMVVLGYDSTLPVTLDDMIYHTKAVARGAPRAL------------------------VVADM 83 (264)
T ss_pred HHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCCCCc------------------------EEEeC
Confidence 5667889999999888753 4566666666677666654111 12332
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEE
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVR 153 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~ 153 (327)
-+++.+ .+.++.+....+...+.|++-+.+-+. +...+.++.+.+.|+.|.
T Consensus 84 pfg~y~-----------~~~~~av~~a~r~~~~aGa~aVkiEdg------------------~~~~~~I~al~~agIpV~ 134 (264)
T PRK00311 84 PFGSYQ-----------ASPEQALRNAGRLMKEAGAHAVKLEGG------------------EEVAETIKRLVERGIPVM 134 (264)
T ss_pred CCCCcc-----------CCHHHHHHHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHCCCCEe
Confidence 112221 233443333333333356665554432 123345666667788776
Q ss_pred EEEeee------cc-CCCCCCCC--hHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 154 GYISCV------VG-CPYEGAVP--PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 154 ~~l~~~------~g-~~~~~r~~--~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.+... ++ .-..+|.+ .+.+.+-++.+.++|++.|.+.-. |. ++.+.+.+.++-+.|++
T Consensus 135 gHiGL~pq~~~~~gg~~i~grt~~~a~~~i~ra~a~~eAGA~~i~lE~v-----~~---~~~~~i~~~l~iP~igi 202 (264)
T PRK00311 135 GHLGLTPQSVNVLGGYKVQGRDEEAAEKLLEDAKALEEAGAFALVLECV-----PA---ELAKEITEALSIPTIGI 202 (264)
T ss_pred eeecccceeecccCCeeeecCCHHHHHHHHHHHHHHHHCCCCEEEEcCC-----CH---HHHHHHHHhCCCCEEEe
Confidence 444321 00 00012332 346777788888999999987432 43 34555555554333444
|
|
| >COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.03 E-value=4.5 Score=38.44 Aligned_cols=147 Identities=17% Similarity=0.197 Sum_probs=78.8
Q ss_pred HHHHHHHHcCcCEEEecCC-ccccCHHHH--------HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDT-IGVGTPGTM--------RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt-~G~~~p~~~--------~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++..+++|+|.|.+-|+ +|..++... .++++.+++..+.. --+|+=-+.+. .+..| +.|++.+
T Consensus 193 ~Yl~~qi~aGAdavqifDsW~g~l~~~~~~~f~~~~~~~i~~~vk~~~~~~-pii~f~~ga~~----~l~~m~~~g~d~l 267 (352)
T COG0407 193 EYLKAQIEAGADAVQIFDSWAGVLSMIDYDEFVLPYMKRIVREVKEVKGGV-PVIHFCKGAGH----LLEDMAKTGFDVL 267 (352)
T ss_pred HHHHHHHHhCCCEEEeeccccccCCcccHHHHhhhHHHHHHHHHHHhCCCC-cEEEECCCcHH----HHHHHHhcCCcEE
Confidence 5678889999999999999 888887663 44445555444332 23444333332 33333 5665554
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhhh-hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEGK-SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~-~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
- +-+ + .+..+....+... .+.-++|-..++ -+.++..+..+++++...+...
T Consensus 268 ~-----vdw------~---v~l~~a~~~~~~~~~lqGNldP~lL~-------------~~~~~i~~~~~~iL~~~~~~~~ 320 (352)
T COG0407 268 G-----VDW------R---VDLKEAKKRLGDKVALQGNLDPALLY-------------APPEAIKEEVKRILEDGGDGSG 320 (352)
T ss_pred e-----ecc------c---cCHHHHHHHhCCCceEEeccChHhhc-------------CCHHHHHHHHHHHHHHhccCCC
Confidence 3 111 1 2233333333221 333344442222 2223334445555555444322
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC 185 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~ 185 (327)
++ - ..||.....++++.+..+.+.+.+++.
T Consensus 321 ~I----f-nlGhGI~P~tp~e~v~~lve~v~~~~~ 350 (352)
T COG0407 321 YI----F-NLGHGILPETPPENVKALVEAVHEYSR 350 (352)
T ss_pred ce----e-cCCCCcCCCCCHHHHHHHHHHHHHhcc
Confidence 22 1 256665557889999888888877654
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=91.96 E-value=1.4 Score=40.82 Aligned_cols=80 Identities=13% Similarity=0.049 Sum_probs=65.8
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
++.|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.+++..+++...+ ++|-+|.=.+..-++..+..|.++|+
T Consensus 21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Ga 100 (296)
T TIGR03249 21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGA 100 (296)
T ss_pred CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCC
Confidence 579999999999999999999999999999 58888888888888877644 67777764445566677778889999
Q ss_pred ceee
Q psy12516 242 SVFD 245 (327)
Q Consensus 242 ~~vd 245 (327)
+.+=
T Consensus 101 dav~ 104 (296)
T TIGR03249 101 DGYL 104 (296)
T ss_pred CEEE
Confidence 9873
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.94 E-value=8.4 Score=34.14 Aligned_cols=184 Identities=13% Similarity=0.112 Sum_probs=108.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHc-CCcEEEeccc-CCCCCCCCCCccCCCcHHHHHHH
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF-GISVFDSSIA-GLGGCPYARGASGNVATEDLVYM 99 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~a-G~~~id~~~~-glg~~p~~~~~~gn~~~e~v~~~ 99 (327)
.-.|+.++..+...-++ .+|..-+-+=..+.-+..+++- ....+-+.++ ++| +.+++ +-.+
T Consensus 19 ~~~T~~~I~~l~~eA~~------~~f~avCV~P~~V~~A~~~l~g~~~~~v~tVigFP~G----------~~~t~-~K~~ 81 (228)
T COG0274 19 PDATEEDIARLCAEAKE------YGFAAVCVNPSYVPLAKEALKGSTVVRVCTVIGFPLG----------ANTTA-VKAA 81 (228)
T ss_pred CCCCHHHHHHHHHHHHh------hCceEEEECcchHHHHHHHhccCCCeEEEEecCCCCC----------CChHH-HHHH
Confidence 44577777777766554 3466666666667777777753 4445666665 444 34443 2122
Q ss_pred hhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHH
Q psy12516 100 LEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATA 179 (327)
Q Consensus 100 l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~ 179 (327)
-.+.+++.|.|.+.+..+.... .....+...+.++.+++.+... ..+.+.+... ..+.+.....++.
T Consensus 82 Ea~~ai~~GAdEiDmVinig~~-----k~g~~~~V~~eI~~v~~a~~~~-~~lKVIlEt~-------~Lt~ee~~~A~~i 148 (228)
T COG0274 82 EAREAIENGADEIDMVINIGAL-----KSGNWEAVEREIRAVVEACADA-VVLKVILETG-------LLTDEEKRKACEI 148 (228)
T ss_pred HHHHHHHcCCCeeeeeeeHHHH-----hcCCHHHHHHHHHHHHHHhCCC-ceEEEEEecc-------ccCHHHHHHHHHH
Confidence 2346788888887766444321 1223344566677777777655 4555555542 4677888999999
Q ss_pred HHHcCcCEEEecCCC----CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCcee
Q psy12516 180 LYKMGCYEISLGDTI----GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVF 244 (327)
Q Consensus 180 ~~~~g~~~i~l~Dt~----G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~v 244 (327)
+.++|+|-| +-++ |-.|++++.-+.+.+.. ++++-.-- |-- ...++..+++|+.+|
T Consensus 149 ~~~aGAdFV--KTSTGf~~~gAT~edv~lM~~~vg~-----~vgvKaSG--GIrt~eda~~~i~aga~Ri 209 (228)
T COG0274 149 AIEAGADFV--KTSTGFSAGGATVEDVKLMKETVGG-----RVGVKASG--GIRTAEDAKAMIEAGATRI 209 (228)
T ss_pred HHHhCCCEE--EcCCCCCCCCCCHHHHHHHHHHhcc-----CceeeccC--CcCCHHHHHHHHHHhHHHh
Confidence 999999965 3444 45778877666555532 34443221 111 244566677786644
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.6 Score=39.94 Aligned_cols=65 Identities=18% Similarity=0.115 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
..-++.+.++|+|.| |-+-.++| ..+++...|+++ ++++-.=+-| +..++.+++.|++.|-+++.
T Consensus 79 ~~Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e 143 (287)
T TIGR00343 79 FVEAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGE 143 (287)
T ss_pred HHHHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEecccc
Confidence 344678889999998 88889999 578888899888 5566652222 57889999999999999987
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=1 Score=40.09 Aligned_cols=100 Identities=12% Similarity=0.091 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHH--HHHHHHHHHhcCCCeEEEeec-CCcCcHHHHHHHHHHhcCcee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCH-DTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~--~~~~~~~~~~~~~~~l~~H~H-n~~g~a~an~l~a~~~G~~~v 244 (327)
.++..+.+..+++.+.|+|.+-+==+-|...|.-. .+.++.+|+..|+.++.+|.| ++.... .-.+.++|++++
T Consensus 16 ~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~---i~~~~~~Gad~i 92 (228)
T PTZ00170 16 ADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKW---VDDFAKAGASQF 92 (228)
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHH---HHHHHHcCCCEE
Confidence 46667778888888888886554444477666521 246778887777788899999 332222 145567788876
Q ss_pred eeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 245 DSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 245 d~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
. +. +| ++.-.++..+..+++.|...+
T Consensus 93 t--vH--~e-------a~~~~~~~~l~~ik~~G~~~g 118 (228)
T PTZ00170 93 T--FH--IE-------ATEDDPKAVARKIREAGMKVG 118 (228)
T ss_pred E--Ee--cc-------CCchHHHHHHHHHHHCCCeEE
Confidence 3 33 22 122225666666666554443
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=91.81 E-value=3.5 Score=37.96 Aligned_cols=15 Identities=20% Similarity=0.195 Sum_probs=9.2
Q ss_pred CCCccHHHHHHHHHh
Q psy12516 261 SGNVATEDLVYMLEG 275 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~ 275 (327)
.+|.-.|.++...+.
T Consensus 207 ~~n~~P~~~~~l~~~ 221 (288)
T cd00954 207 TYNVNGKRYRKIFEA 221 (288)
T ss_pred hhhhCHHHHHHHHHH
Confidence 456666776666654
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=91.72 E-value=5 Score=37.71 Aligned_cols=78 Identities=14% Similarity=0.069 Sum_probs=55.2
Q ss_pred CChHHHHHHHHHHHHcCcCEEEe---c-----CCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 168 VPPHNVTRVATALYKMGCYEISL---G-----DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l---~-----Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
.+++.+.++++.+.++|+|.|.| + +-.|...++.+.++++.+++... +||.+-.--+......-+.++.++
T Consensus 109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~-iPv~vKl~p~~~~~~~~a~~l~~~ 187 (325)
T cd04739 109 VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT-IPVAVKLSPFFSALAHMAKQLDAA 187 (325)
T ss_pred CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC-CCEEEEcCCCccCHHHHHHHHHHc
Confidence 46788899999999999996654 1 22333445677889999998764 577776654555455566667788
Q ss_pred cCceeee
Q psy12516 240 GISVFDS 246 (327)
Q Consensus 240 G~~~vd~ 246 (327)
|++.|..
T Consensus 188 Gadgi~~ 194 (325)
T cd04739 188 GADGLVL 194 (325)
T ss_pred CCCeEEE
Confidence 9998754
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PLN02424 ketopantoate hydroxymethyltransferase | Back alignment and domain information |
|---|
Probab=91.69 E-value=11 Score=35.48 Aligned_cols=39 Identities=18% Similarity=0.020 Sum_probs=28.5
Q ss_pred HHHHHHHcCcCEEEecCCcc----------ccCHHHHHHHHHHHHhhcC
Q psy12516 3 VASALYKMGCYEISLGDTIG----------VGTPGTMRLMLEDVLTVIP 41 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G----------~~~p~~~~~~~~~~~~~~~ 41 (327)
.++.+.++|+|.|.+.|+.| ..|.+++-..++.+++..+
T Consensus 47 sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~Vtld~mi~H~~aV~Rga~ 95 (332)
T PLN02424 47 SAVHVDSAGIDVCLVGDSAAMVVHGHDTTLPITLDEMLVHCRAVARGAN 95 (332)
T ss_pred HHHHHHHcCCCEEEECCcHHHHhcCCCCCCCcCHHHHHHHHHHHhccCC
Confidence 35678889999999999986 3455556666666666654
|
|
| >PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds [] | Back alignment and domain information |
|---|
Probab=91.69 E-value=0.74 Score=41.38 Aligned_cols=129 Identities=15% Similarity=0.141 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh-cCC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV-IPA 215 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~~~ 215 (327)
.+++-++.++++|+.+.. ..++ ++--+....+.++.+.+.++|.+.|.+.|-+-.+.+++-.++++.+++. +.
T Consensus 55 ~l~eki~l~~~~gV~v~~--GGtl---~E~a~~q~~~~~yl~~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~- 128 (244)
T PF02679_consen 55 ILKEKIDLAHSHGVYVYP--GGTL---FEVAYQQGKFDEYLEECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFK- 128 (244)
T ss_dssp HHHHHHHHHHCTT-EEEE---HHH---HHHHHHTT-HHHHHHHHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSE-
T ss_pred HHHHHHHHHHHcCCeEeC--CcHH---HHHHHhcChHHHHHHHHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCE-
Confidence 367789999999998751 1111 1112235678888899999999999999999889999988999988876 32
Q ss_pred CeEEEeecC-------CcCcHHHHHHHHHHhcCcee--eec---cccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 216 DRLAVHCHD-------TYGQALANILTAMEFGISVF--DSS---IAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 216 ~~l~~H~Hn-------~~g~a~an~l~a~~~G~~~v--d~s---~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
+--++...+ |...-+......+++||+.| ++- -.|+-. ..|+...+.+-..++..+
T Consensus 129 v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarEsG~~Gi~~------~~g~~r~d~v~~i~~~~~ 196 (244)
T PF02679_consen 129 VLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARESGKGGIYD------NDGEVRTDLVEKIIERLG 196 (244)
T ss_dssp EEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TTT--STTB-------TTS-B-HHHHHHHHTTS-
T ss_pred EeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeeccCCCCccC------CCCCccHHHHHHHHHhCC
Confidence 122232222 24566788889999999985 433 225555 679999888887776644
|
Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A. |
| >PLN02428 lipoic acid synthase | Back alignment and domain information |
|---|
Probab=91.67 E-value=11 Score=35.95 Aligned_cols=51 Identities=18% Similarity=0.253 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
.++..++++.+++. |+.+..+++.-+| =+.+++.+..+.+.+.|+|.+.+.
T Consensus 230 ye~~Le~L~~ak~~~pGi~tkSg~MvGLG------ET~Edv~e~l~~Lrelgvd~vtig 282 (349)
T PLN02428 230 YKQSLDVLKHAKESKPGLLTKTSIMLGLG------ETDEEVVQTMEDLRAAGVDVVTFG 282 (349)
T ss_pred HHHHHHHHHHHHHhCCCCeEEEeEEEecC------CCHHHHHHHHHHHHHcCCCEEeec
Confidence 44566778888888 9988766665433 267899999999999999998653
|
|
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=91.63 E-value=9.2 Score=33.87 Aligned_cols=107 Identities=18% Similarity=0.199 Sum_probs=66.1
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
++.++.+.++.+.+++.|+++.+.. ...|.......+.+.+...++...+.|+|.|.+.-|. .++. ++.+.+
T Consensus 105 ~~~~~~i~~v~~~~~~~g~~~iie~-~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~~~~---~~~~----~~~i~~ 176 (235)
T cd00958 105 REMLEELARVAAEAHKYGLPLIAWM-YPRGPAVKNEKDPDLIAYAARIGAELGADIVKTKYTG---DAES----FKEVVE 176 (235)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEE-eccCCcccCccCHHHHHHHHHHHHHHCCCEEEecCCC---CHHH----HHHHHh
Confidence 3457788888899999999875422 1111111112345677777888889999999885332 2333 444555
Q ss_pred hcCCCeEEEeec---CCcCcHHHHHHHHHHhcCceeeec
Q psy12516 212 VIPADRLAVHCH---DTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 212 ~~~~~~l~~H~H---n~~g~a~an~l~a~~~G~~~vd~s 247 (327)
..+ +|+..=.. .|..-.+.|.-.++++|++.|-..
T Consensus 177 ~~~-~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg 214 (235)
T cd00958 177 GCP-VPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG 214 (235)
T ss_pred cCC-CCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence 554 35543232 333446788999999999987543
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PRK05481 lipoyl synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.62 E-value=11 Score=34.78 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+...++++.+++. |+.+...+..-|| =+.++..+..+.+.+.+.+.+.+
T Consensus 179 ~e~~le~i~~ar~~~pgi~~~t~~IvGfG------ET~ed~~~tl~~lrel~~d~v~i 230 (289)
T PRK05481 179 YERSLELLKRAKELHPGIPTKSGLMVGLG------ETDEEVLEVMDDLRAAGVDILTI 230 (289)
T ss_pred HHHHHHHHHHHHHhCCCCeEeeeeEEECC------CCHHHHHHHHHHHHhcCCCEEEE
Confidence 45567788899998 9988766554332 25688889999999999997766
|
|
| >PRK09856 fructoselysine 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=10 Score=34.26 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.0
Q ss_pred CCCccHHHHHHHHHhCCCCCCCChh
Q psy12516 261 SGNVATEDLVYMLEGMGIETGADLT 285 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~~g~~~~~d~~ 285 (327)
.|+.+..+++..|++.||+--+-++
T Consensus 223 ~G~id~~~i~~~L~~~gy~g~~~lE 247 (275)
T PRK09856 223 EGKMPLRELMRDIIDRGYEGYCTVE 247 (275)
T ss_pred CCCCCHHHHHHHHHHcCCCceEEEE
Confidence 6899999999999998887444333
|
|
| >PRK05799 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=91.52 E-value=8.4 Score=36.80 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+.+.+.++.+++.|+. +.+.+ ++|-|. -+.+.+.+..+.+.+.+++.|.+
T Consensus 134 ~~~~~~ai~~l~~~g~~~v~~dl--i~GlPg---qt~e~~~~~l~~~~~l~~~~is~ 185 (374)
T PRK05799 134 FEEFLENYKLARKLGFNNINVDL--MFGLPN---QTLEDWKETLEKVVELNPEHISC 185 (374)
T ss_pred HHHHHHHHHHHHHcCCCcEEEEe--ecCCCC---CCHHHHHHHHHHHHhcCCCEEEE
Confidence 34566677788888875 54443 355554 36778888888888888886654
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=91.51 E-value=16 Score=36.48 Aligned_cols=65 Identities=14% Similarity=0.173 Sum_probs=49.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
+.++++.+.|||.|-+.=-++.-.+.++...++.+++... .++++-+.+. .-+.+|+++|++.|.
T Consensus 169 ~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~-~pISIDT~~~-----~v~eaAL~aGAdiIN 233 (499)
T TIGR00284 169 GLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALD-SPVIADTPTL-----DELYEALKAGASGVI 233 (499)
T ss_pred HHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCC-CcEEEeCCCH-----HHHHHHHHcCCCEEE
Confidence 4577888999999999866555566678888988887653 6776655544 356788899999987
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli | Back alignment and domain information |
|---|
Probab=91.40 E-value=13 Score=35.21 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=71.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhh-----cCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV-----IPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~-----~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++++.++|++.+++.= .+... ..-+..+++. .| +|+..-.|-++.+| +.|+++ ++-+-..=+
T Consensus 35 ~QI~~L~~aGceivRvav----p~~~~-a~al~~I~~~l~~~g~~-iPlVADIHFd~~lA----l~a~~~-v~kiRINPG 103 (359)
T PF04551_consen 35 AQIKRLEEAGCEIVRVAV----PDMEA-AEALKEIKKRLRALGSP-IPLVADIHFDYRLA----LEAIEA-VDKIRINPG 103 (359)
T ss_dssp HHHHHHHHCT-SEEEEEE-----SHHH-HHHHHHHHHHHHCTT-S-S-EEEEESTTCHHH----HHHHHC--SEEEE-TT
T ss_pred HHHHHHHHcCCCEEEEcC----CCHHH-HHHHHHHHHhhccCCCC-CCeeeecCCCHHHH----HHHHHH-hCeEEECCC
Confidence 467889999999766542 12333 2224444444 44 89999999898775 556777 887775555
Q ss_pred CCCCCCCCCCccC-CCcHHHHHHHhhhh--hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe
Q psy12516 77 GLGGCPYARGASG-NVATEDLVYMLEGK--SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 77 glg~~p~~~~~~g-n~~~e~v~~~l~~~--~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
.++. .|...... .-..++++...++. .+.-|++.=.+. .+.+.++ +-+.+-.++.+.+.++.+.+.|++
T Consensus 104 Ni~~-~~~~~~g~~~~~~~~vv~~ake~~ipIRIGvN~GSL~---~~~~~ky--~~t~~amvesA~~~~~~le~~~f~ 175 (359)
T PF04551_consen 104 NIVD-EFQEELGSIREKVKEVVEAAKERGIPIRIGVNSGSLE---KDILEKY--GPTPEAMVESALEHVRILEELGFD 175 (359)
T ss_dssp TSS-----SS-SS-HHHHHHHHHHHHHHT-EEEEEEEGGGS----HHHHHHH--CHHHHHHHHHHHHHHHHHHHCT-G
T ss_pred cccc-cccccccchHHHHHHHHHHHHHCCCCEEEecccccCc---HHHHhhc--cchHHHHHHHHHHHHHHHHHCCCC
Confidence 6642 33222211 23455566665543 334455443221 1222222 455566677778888888888886
|
It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A. |
| >KOG3111|consensus | Back alignment and domain information |
|---|
Probab=91.36 E-value=1.7 Score=37.53 Aligned_cols=113 Identities=19% Similarity=0.226 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE---EEecCCC-CccCHHHHHHHHHHHHH
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE---ISLGDTI-GVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~---i~l~Dt~-G~~~P~~~~~~~~~~~~ 211 (327)
+...+++++.|++|.++...+. | -++.+.+..+.+. +|- ..+.--+ |.-.-++.-..+..||+
T Consensus 99 q~~~~lv~~ir~~Gmk~G~alk-----P---gT~Ve~~~~~~~~-----~D~vLvMtVePGFGGQkFme~mm~KV~~lR~ 165 (224)
T KOG3111|consen 99 QKPAELVEKIREKGMKVGLALK-----P---GTPVEDLEPLAEH-----VDMVLVMTVEPGFGGQKFMEDMMPKVEWLRE 165 (224)
T ss_pred cCHHHHHHHHHHcCCeeeEEeC-----C---CCcHHHHHHhhcc-----ccEEEEEEecCCCchhhhHHHHHHHHHHHHH
Confidence 4467789999999999876544 2 2566666655542 231 1222222 23334556666899999
Q ss_pred hcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 212 VIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 212 ~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++|...+++ |-|....|.-.+.++||+.+=+.-.=+ |-.+-.+++..|+.
T Consensus 166 kyp~l~iev----DGGv~~~ti~~~a~AGAN~iVaGsavf----------~a~d~~~vi~~lr~ 215 (224)
T KOG3111|consen 166 KYPNLDIEV----DGGVGPSTIDKAAEAGANMIVAGSAVF----------GAADPSDVISLLRN 215 (224)
T ss_pred hCCCceEEe----cCCcCcchHHHHHHcCCCEEEecceee----------cCCCHHHHHHHHHH
Confidence 999888877 789999999999999999864433322 34566777777764
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=91.35 E-value=1.7 Score=39.94 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=68.5
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHH
Q psy12516 129 CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLED 208 (327)
Q Consensus 129 ~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~ 208 (327)
.+++++++ .++++++.|..-...+..-++ + ...+.+++.++++.+.+.+.+ +.+.-+.|.++++.+.++...
T Consensus 40 ~s~eeI~~----~a~~a~~~g~~~~~lv~sg~~-~--~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a 111 (279)
T PRK08508 40 KDIEQIVQ----EAKMAKANGALGFCLVTSGRG-L--DDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA 111 (279)
T ss_pred CCHHHHHH----HHHHHHHCCCCEEEEEeccCC-C--CcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence 46566444 345556667742211111111 1 123667888888888876543 234446788887765554332
Q ss_pred HHHhcC-CCeEE--Eeec----CCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 209 VLTVIP-ADRLA--VHCH----DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 209 ~~~~~~-~~~l~--~H~H----n~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
=...++ +.+.. ++.+ .++---+.....|-++|...-.+-+.|+|| . .-...+.+..|++.+.+
T Consensus 112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGE------t--~ed~~~~l~~lr~L~~~ 181 (279)
T PRK08508 112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGE------S--WEDRISFLKSLASLSPH 181 (279)
T ss_pred CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCC------C--HHHHHHHHHHHHcCCCC
Confidence 011111 00000 1111 111222334445678888777888888888 2 34455555566655544
|
|
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.23 E-value=12 Score=34.42 Aligned_cols=212 Identities=13% Similarity=0.129 Sum_probs=115.6
Q ss_pred HHHHHHcCcCEEEecCC----------ccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHH---HHHH-HcCCc
Q psy12516 4 ASALYKMGCYEISLGDT----------IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI---LTAM-EFGIS 69 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt----------~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~---~~a~-~aG~~ 69 (327)
++.+.++|.+.|++.=- .|..|..++-..++.+.+.. ++|+..-.=+-+|. ..|+ +.-+ ++|+.
T Consensus 31 A~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~-~lPv~vD~dtGfG~-~~nvartV~~~~~aG~a 108 (289)
T COG2513 31 ALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAV-DLPVLVDIDTGFGE-ALNVARTVRELEQAGAA 108 (289)
T ss_pred HHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhc-CCceEEeccCCCCc-HHHHHHHHHHHHHcCcc
Confidence 45567778777766432 26677777777777777766 37888888888887 3333 3333 67776
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG 149 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G 149 (327)
-+..-=.-... +.|+.+-. .+ .+.++..++++.+++..++..
T Consensus 109 gi~iEDq~~pk------~cgh~~gk------------------~l--------------~~~~e~v~rIkAa~~a~~~~~ 150 (289)
T COG2513 109 GIHIEDQVGPK------RCGHLPGK------------------EL--------------VSIDEMVDRIKAAVEARRDPD 150 (289)
T ss_pred eeeeeecccch------hcCCCCCC------------------Cc--------------CCHHHHHHHHHHHHHhccCCC
Confidence 54422111111 11221111 00 122334556555555554433
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA 229 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a 229 (327)
+-+.+ =.+++. .-..+..++-++...++|+|.|.. -|+-+++++..+.+.++ .|- ++-+--+-...+-
T Consensus 151 fvi~A-RTda~~-----~~~ld~AI~Ra~AY~eAGAD~if~---~al~~~e~i~~f~~av~--~pl-~~N~t~~g~tp~~ 218 (289)
T COG2513 151 FVIIA-RTDALL-----VEGLDDAIERAQAYVEAGADAIFP---EALTDLEEIRAFAEAVP--VPL-PANITEFGKTPLL 218 (289)
T ss_pred eEEEe-ehHHHH-----hccHHHHHHHHHHHHHcCCcEEcc---ccCCCHHHHHHHHHhcC--CCe-eeEeeccCCCCCc
Confidence 32211 011111 112466667777788999999984 46666777777666665 232 2322222211222
Q ss_pred HHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 230 LANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 230 ~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
.. -.--++|+++|-..+..+ |+.+..++.++..+++.|
T Consensus 219 ~~--~~L~~~Gv~~V~~~~~~~--------raa~~a~~~~~~~i~~~g 256 (289)
T COG2513 219 TV--AELAELGVKRVSYGLTAF--------RAALKAAEQAAREIRREG 256 (289)
T ss_pred CH--HHHHhcCceEEEECcHHH--------HHHHHHHHHHHHHHHhcC
Confidence 22 233467998887644433 677888888888887766
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=91.11 E-value=0.77 Score=41.96 Aligned_cols=66 Identities=17% Similarity=0.051 Sum_probs=51.7
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecccc
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 250 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G 250 (327)
..-++.+.++|+|.| |-+...+| ..+++..+|+++ +.++-.=+- -+..++.|.+.|++.|-+|+.|
T Consensus 77 ~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~s-----tleEal~a~~~Gad~I~TTl~g 142 (283)
T cd04727 77 FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGAR-----NLGEALRRISEGAAMIRTKGEA 142 (283)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCC-----CHHHHHHHHHCCCCEEEecCCC
Confidence 445677889999999 77777888 688999999887 555544211 1678899999999999999983
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=91.02 E-value=14 Score=34.78 Aligned_cols=126 Identities=18% Similarity=0.136 Sum_probs=76.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
+.++++.++|++.+++.= .+. +-.+-+..+++..| +|+..-.|-++-+ ++.+++.|++-+-..=+.+|.
T Consensus 38 ~QI~~L~~aGceiVRvav----p~~-~~A~al~~I~~~~~-iPlVADIHFd~~l----Al~a~~~g~dkiRINPGNig~- 106 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVTV----PDR-ESAAAFEAIKEGTN-VPLVADIHFDYRL----AALAMAKGVAKVRINPGNIGF- 106 (346)
T ss_pred HHHHHHHHcCCCEEEEcC----CCH-HHHHhHHHHHhCCC-CCEEEeeCCCcHH----HHHHHHhccCeEEECCCCCCC-
Confidence 567889999999777652 223 33445677777776 8888877777654 577889999988855555553
Q ss_pred CCCCCccCCCcHHHHHHHhhhh--hcccCcchhhhhhhhhHHHHHHhhc-CChHHHHHHHHHHHHHHHHcCCe
Q psy12516 82 PYARGASGNVATEDLVYMLEGK--SMQCGVKEIAVFASASEMFSKRNIN-CTIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~--~~~~Gid~i~l~~~~sd~~~~~~l~-~s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
.-..+.++...++. .+.-|++.= ++++. ...+.+ -+++-.++.+.+.++.+.+.|++
T Consensus 107 --------~e~v~~vv~~ak~~~ipIRIGVN~G----SL~~~-~~~kyg~~t~eamveSAl~~v~~le~~~F~ 166 (346)
T TIGR00612 107 --------RERVRDVVEKARDHGKAMRIGVNHG----SLERR-LLEKYGDATAEAMVQSALEEAAILEKLGFR 166 (346)
T ss_pred --------HHHHHHHHHHHHHCCCCEEEecCCC----CCcHH-HHHHcCCCCHHHHHHHHHHHHHHHHHCCCC
Confidence 11244455444432 233344332 22221 222334 35566677777777777777776
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=91.01 E-value=1.8 Score=40.02 Aligned_cols=81 Identities=19% Similarity=0.117 Sum_probs=67.3
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
++.|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+...+ ++|-.|. +++.--++..+..|.+.|
T Consensus 16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G 95 (294)
T TIGR02313 16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAG 95 (294)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence 589999999999999999999999999999 47778888888877776643 6777766 567777888889999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 96 ad~v~v 101 (294)
T TIGR02313 96 ADAAMV 101 (294)
T ss_pred CCEEEE
Confidence 987654
|
This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=90.98 E-value=4.1 Score=37.34 Aligned_cols=82 Identities=13% Similarity=0.095 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
++.+.+.+.+.++.+.+.|++.+.+.-|+| .++.++-.+++..+++..+ .++|-++.- ++..-++..+..|.++|
T Consensus 16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G 95 (284)
T cd00950 16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAG 95 (284)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999998 5888888888888888765 467777775 46777888889999999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.|=..
T Consensus 96 ~d~v~~~ 102 (284)
T cd00950 96 ADAALVV 102 (284)
T ss_pred CCEEEEc
Confidence 9987654
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=90.93 E-value=1.2 Score=38.31 Aligned_cols=71 Identities=20% Similarity=0.346 Sum_probs=51.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+-++.+.++|+|.|.+ |-+....|..+.++++.+++.+ ..+-.-+ . .+...+.|.++|++.|-+++.|.-+
T Consensus 55 ~ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADi-s----t~ee~~~A~~~G~D~I~TTLsGYT~ 125 (192)
T PF04131_consen 55 KEVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADI-S----TLEEAINAAELGFDIIGTTLSGYTP 125 (192)
T ss_dssp HHHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE--S----SHHHHHHHHHTT-SEEE-TTTTSST
T ss_pred HHHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeec-C----CHHHHHHHHHcCCCEEEcccccCCC
Confidence 5578899999999987 7788888888999999999977 2222211 1 2678899999999999999998886
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=90.92 E-value=12 Score=34.00 Aligned_cols=65 Identities=22% Similarity=0.273 Sum_probs=41.1
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHc--CCcEEE
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF--GISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~a--G~~~id 72 (327)
+.+++..+.|+|.|-+.=-+ +--.+.++...++.+++.. +.++.+ |++- ..-+.+|+++ |.+.|.
T Consensus 29 ~~A~~~~~~GAdiIDVg~~~~~~eE~~r~~~~v~~l~~~~-~~plsI---DT~~--~~v~eaaL~~~~G~~iIN 96 (261)
T PRK07535 29 KLALKQAEAGADYLDVNAGTAVEEEPETMEWLVETVQEVV-DVPLCI---DSPN--PAAIEAGLKVAKGPPLIN 96 (261)
T ss_pred HHHHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHHHHhC-CCCEEE---eCCC--HHHHHHHHHhCCCCCEEE
Confidence 56788889999998887422 2233556777777776655 366644 4443 2344566666 888766
|
|
| >PRK04147 N-acetylneuraminate lyase; Provisional | Back alignment and domain information |
|---|
Probab=90.91 E-value=1.9 Score=39.90 Aligned_cols=82 Identities=16% Similarity=0.180 Sum_probs=70.2
Q ss_pred CCCChHHHHHHHHHHHH-cCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 166 GAVPPHNVTRVATALYK-MGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~-~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
++.+.+-+.++++.+.+ .|++.|.+.-|+| .++.++-.++++.+++..++ +++-++. +++.--++..+..|.++
T Consensus 19 g~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~~ 98 (293)
T PRK04147 19 GQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATEL 98 (293)
T ss_pred CCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHHc
Confidence 57999999999999999 9999999999999 48888888888888887654 6788877 67778888899999999
Q ss_pred cCceeeec
Q psy12516 240 GISVFDSS 247 (327)
Q Consensus 240 G~~~vd~s 247 (327)
|++.+=..
T Consensus 99 Gad~v~v~ 106 (293)
T PRK04147 99 GYDAISAV 106 (293)
T ss_pred CCCEEEEe
Confidence 99987654
|
|
| >cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) | Back alignment and domain information |
|---|
Probab=90.90 E-value=4.7 Score=37.13 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=67.7
Q ss_pred CCCChHHHHHHHHHHHHc-CcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 166 GAVPPHNVTRVATALYKM-GCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~-g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
+..|.+.+.++++.+.+. |++.|.+.-|+| .++.++-.++++...+...+ +++-++. +++.--++..+..|.++
T Consensus 16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~ 95 (288)
T cd00954 16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEEL 95 (288)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHc
Confidence 478999999999999999 999999999999 47788888888888877644 6777776 56777788889999999
Q ss_pred cCceeee
Q psy12516 240 GISVFDS 246 (327)
Q Consensus 240 G~~~vd~ 246 (327)
|++.+=.
T Consensus 96 Gad~v~~ 102 (288)
T cd00954 96 GYDAISA 102 (288)
T ss_pred CCCEEEE
Confidence 9998653
|
It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=90.89 E-value=6.4 Score=36.16 Aligned_cols=118 Identities=15% Similarity=0.155 Sum_probs=71.0
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...+ +..++.|++.+-+.....+. ...|.+|..+-++.+++.++ ....+.+.+. ..
T Consensus 17 g~id~~~~~~~i-~~l~~~Gv~gl~~~GstGE~-----~~Lt~~Er~~l~~~~~~~~~-~~~~vi~gv~---------~~ 80 (289)
T PF00701_consen 17 GSIDEDALKRLI-DFLIEAGVDGLVVLGSTGEF-----YSLTDEERKELLEIVVEAAA-GRVPVIAGVG---------AN 80 (289)
T ss_dssp SSB-HHHHHHHH-HHHHHTTSSEEEESSTTTTG-----GGS-HHHHHHHHHHHHHHHT-TSSEEEEEEE---------SS
T ss_pred cCcCHHHHHHHH-HHHHHcCCCEEEECCCCccc-----ccCCHHHHHHHHHHHHHHcc-CceEEEecCc---------ch
Confidence 556655554443 33457788887777666653 34555564444444455443 2344433222 25
Q ss_pred ChHHHHHHHHHHHHcCcCEEE-ecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 169 PPHNVTRVATALYKMGCYEIS-LGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~-l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
+.+...++++.+.+.|+|.+. ++-.....+++++.+.++.+.+. .+.|+.++-+
T Consensus 81 st~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~~-~~~pi~iYn~ 135 (289)
T PF00701_consen 81 STEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIADA-TDLPIIIYNN 135 (289)
T ss_dssp SHHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHHH-SSSEEEEEEB
T ss_pred hHHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHhh-cCCCEEEEEC
Confidence 678888888888899988664 44556667888888888888855 4456666444
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=90.72 E-value=15 Score=34.53 Aligned_cols=93 Identities=15% Similarity=0.192 Sum_probs=49.0
Q ss_pred HHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCC-eeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCC
Q psy12516 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGG 80 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~-~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~ 80 (327)
+++.+.+.|+..|.|..---.+.| ++.++++.+++. +.. .+.+.+ .|.-+...+..+ ++|++.|.+++.++.+
T Consensus 51 ~i~~~~~~gv~~V~ltGGEPll~~-~l~~li~~i~~~-~gi~~v~itT---NG~ll~~~~~~L~~~gl~~v~ISld~~~~ 125 (334)
T TIGR02666 51 LVRAFVGLGVRKVRLTGGEPLLRK-DLVELVARLAAL-PGIEDIALTT---NGLLLARHAKDLKEAGLKRVNVSLDSLDP 125 (334)
T ss_pred HHHHHHHCCCCEEEEECccccccC-CHHHHHHHHHhc-CCCCeEEEEe---CchhHHHHHHHHHHcCCCeEEEecccCCH
Confidence 455666778888887542122222 355556655442 223 344433 455555555555 6788888888877664
Q ss_pred CCCCCCccCCCcHHHHHHHh
Q psy12516 81 CPYARGASGNVATEDLVYML 100 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l 100 (327)
.-|.....+....+.++..+
T Consensus 126 ~~~~~i~~~~~~~~~vl~~i 145 (334)
T TIGR02666 126 ERFAKITRRGGRLEQVLAGI 145 (334)
T ss_pred HHhheeCCCCCCHHHHHHHH
Confidence 33332221233445554443
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=90.69 E-value=12 Score=33.67 Aligned_cols=182 Identities=17% Similarity=0.199 Sum_probs=100.3
Q ss_pred HHHHHHHcCcCEEEecCCc--cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 3 VASALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~--G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
-+..+.+.|+|+|.||+.. |-.||.. .+++.+++... +| +-+-++.-++
T Consensus 13 ~a~~A~~~GAdRiELc~~L~~GGlTPS~--g~i~~~~~~~~-ip--------------------------v~vMIRPR~g 63 (248)
T PRK11572 13 CALTAQQAGADRIELCAAPKEGGLTPSL--GVLKSVRERVT-IP--------------------------VHPIIRPRGG 63 (248)
T ss_pred HHHHHHHcCCCEEEEccCcCCCCcCCCH--HHHHHHHHhcC-CC--------------------------eEEEEecCCC
Confidence 4567889999999999966 8888875 33444444331 22 2233443332
Q ss_pred CCCCCCccCCCcHHHHHHHhh--hhhcccCcchhhh--hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 81 CPYARGASGNVATEDLVYMLE--GKSMQCGVKEIAV--FASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~--~~~~~~Gid~i~l--~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
.| --+.+++-.+.. +...+.|.|.+-+ +.+... .+ .+.++++++.++ |+++. +
T Consensus 64 -dF------~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~--------vD----~~~~~~Li~~a~--~~~vT--F 120 (248)
T PRK11572 64 -DF------CYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGH--------VD----MPRMRKIMAAAG--PLAVT--F 120 (248)
T ss_pred -CC------CCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCC--------cC----HHHHHHHHHHhc--CCceE--E
Confidence 01 112233322222 2455667775532 211111 11 456777777774 55553 2
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc-cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHH
Q psy12516 157 SCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV-GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 235 (327)
Q Consensus 157 ~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~ 235 (327)
-.+| +. . + ...+..+.+.++|+++|- |+|. .+..+-.+.++.+.+...+..|-. =-|.-..|.-.
T Consensus 121 HRAf----D~-~-~-d~~~al~~l~~lG~~rIL---TSGg~~~a~~g~~~L~~lv~~a~~~~Im~----GgGV~~~Nv~~ 186 (248)
T PRK11572 121 HRAF----DM-C-A-NPLNALKQLADLGVARIL---TSGQQQDAEQGLSLIMELIAASDGPIIMA----GAGVRLSNLHK 186 (248)
T ss_pred echh----hc-c-C-CHHHHHHHHHHcCCCEEE---CCCCCCCHHHHHHHHHHHHHhcCCCEEEe----CCCCCHHHHHH
Confidence 2333 21 1 1 234678889999999986 6665 445555566666666554422211 12555677766
Q ss_pred HHHhcCceeeecccc
Q psy12516 236 AMEFGISVFDSSIAG 250 (327)
Q Consensus 236 a~~~G~~~vd~s~~G 250 (327)
-.+.|++.|+.|-..
T Consensus 187 l~~tG~~~~H~s~~~ 201 (248)
T PRK11572 187 FLDAGVREVHSSAGQ 201 (248)
T ss_pred HHHcCCCEEeeCCCc
Confidence 668999999987653
|
|
| >COG0635 HemN Coproporphyrinogen III oxidase and related Fe-S oxidoreductases [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=90.60 E-value=7.7 Score=37.87 Aligned_cols=130 Identities=17% Similarity=0.243 Sum_probs=83.2
Q ss_pred cCEEEecCCc-cccCHHHHHHHHHHHHhhcC--C--CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 12 CYEISLGDTI-GVGTPGTMRLMLEDVLTVIP--A--DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 12 ~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~--~--~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
++.|.+.=-+ -.++|.++..++..+++.++ + .++.+-+ +.+.--..-..++ ++|+.+|..++..+..
T Consensus 88 v~ti~~GGGTPslL~~~~l~~ll~~l~~~~~~~~~~~EitiE~--nP~~~~~e~~~~l~~~GvNRiSlGVQsf~~----- 160 (416)
T COG0635 88 VKTIYFGGGTPSLLSPEQLERLLKALRELFNDLDPDAEITIEA--NPGTVEAEKFKALKEAGVNRISLGVQSFND----- 160 (416)
T ss_pred EEEEEECCCccccCCHHHHHHHHHHHHHhcccCCCCceEEEEe--CCCCCCHHHHHHHHHcCCCEEEeccccCCH-----
Confidence 4456665433 67889999999999999883 2 4555555 5655555556666 6888888877776653
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~ 165 (327)
++...+. +++ ..+....++..+++.|+.- +++-.++|-|.
T Consensus 161 ---------~~lk~lg---------R~h--------------------~~~~~~~a~~~~~~~g~~~-in~DLIyglP~- 200 (416)
T COG0635 161 ---------EVLKALG---------RIH--------------------DEEEAKEAVELARKAGFTS-INIDLIYGLPG- 200 (416)
T ss_pred ---------HHHHHhc---------CCC--------------------CHHHHHHHHHHHHHcCCCc-EEEEeecCCCC-
Confidence 2222111 110 1344666778888888762 23444456564
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+-.++++++++|+|.+
T Consensus 201 --QT~~~~~~~l~~a~~l~pdhis~ 223 (416)
T COG0635 201 --QTLESLKEDLEQALELGPDHLSL 223 (416)
T ss_pred --CCHHHHHHHHHHHHhCCCCEEEE
Confidence 36778888888899999886654
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=90.47 E-value=3 Score=36.13 Aligned_cols=100 Identities=10% Similarity=0.049 Sum_probs=65.3
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHHHHhcCceee
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a~~~G~~~vd 245 (327)
..+.+...++++.+ +-|++.|.+ +.-+.+|.. .+.++.+++.+|+..+.+|.|= |-|. -....+.++|++.|-
T Consensus 8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~d~~~--~~~~~~~~~Gad~i~ 81 (206)
T TIGR03128 8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTMDAGE--YEAEQAFAAGADIVT 81 (206)
T ss_pred CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeeccchH--HHHHHHHHcCCCEEE
Confidence 36788999999998 788888776 212333433 4678889888775555555441 3331 245678899999875
Q ss_pred eccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCC
Q psy12516 246 SSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283 (327)
Q Consensus 246 ~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d 283 (327)
.-. + +++..+++++...+++|....++
T Consensus 82 vh~----~-------~~~~~~~~~i~~~~~~g~~~~~~ 108 (206)
T TIGR03128 82 VLG----V-------ADDATIKGAVKAAKKHGKEVQVD 108 (206)
T ss_pred Eec----c-------CCHHHHHHHHHHHHHcCCEEEEE
Confidence 321 1 23345677888888888777644
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=90.46 E-value=11 Score=33.59 Aligned_cols=155 Identities=17% Similarity=0.229 Sum_probs=83.7
Q ss_pred HHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccC
Q psy12516 3 VASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAG 77 (327)
Q Consensus 3 ~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~g 77 (327)
-++++.+ |+| .+-+.| |...|.-. ...++++++.. ..++..|..-.. ..+.+..+ ++|+++|-.=.-.
T Consensus 20 el~~l~~-g~d~lH~DiMD--G~FVPN~tfg~~~i~~ir~~t-~~~~DvHLMv~~---P~~~i~~~~~aGad~it~H~Ea 92 (229)
T PRK09722 20 QIEFLNS-KADYFHIDIMD--GHFVPNLTLSPFFVSQVKKLA-SKPLDVHLMVTD---PQDYIDQLADAGADFITLHPET 92 (229)
T ss_pred HHHHHHh-CCCEEEEeccc--CccCCCcccCHHHHHHHHhcC-CCCeEEEEEecC---HHHHHHHHHHcCCCEEEECccC
Confidence 3456666 888 477777 77777532 34577777653 477888887664 45566555 7999975422211
Q ss_pred CCCCCCCCCccCCCcHHHHHHHhhhhhcccCc------------------chhhhhhhhhHHHHHHhhcCChHHHHHHHH
Q psy12516 78 LGGCPYARGASGNVATEDLVYMLEGKSMQCGV------------------KEIAVFASASEMFSKRNINCTIEESLERFS 139 (327)
Q Consensus 78 lg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gi------------------d~i~l~~~~sd~~~~~~l~~s~ee~i~~~~ 139 (327)
.- ..+..++..+++.+++.|+ |.+-++ ++.+.+.-. .-.++.+++++
T Consensus 93 ~~-----------~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvM-sV~PGf~GQ---~fi~~~l~KI~ 157 (229)
T PRK09722 93 IN-----------GQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVM-TVDPGFAGQ---PFIPEMLDKIA 157 (229)
T ss_pred Cc-----------chHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEE-EEcCCCcch---hccHHHHHHHH
Confidence 10 0122333334444444332 111111 111111111 11345677778
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
++-++..++|+.+...+ ++-.+. +.+.++.++|+|.+...
T Consensus 158 ~lr~~~~~~~~~~~IeV--------DGGI~~----~~i~~~~~aGad~~V~G 197 (229)
T PRK09722 158 ELKALRERNGLEYLIEV--------DGSCNQ----KTYEKLMEAGADVFIVG 197 (229)
T ss_pred HHHHHHHhcCCCeEEEE--------ECCCCH----HHHHHHHHcCCCEEEEC
Confidence 77777777886643211 223443 45567888999998765
|
|
| >cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) | Back alignment and domain information |
|---|
Probab=90.43 E-value=7.5 Score=36.26 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=16.3
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
.|..+.+.+...++ ..++.|++.+-+..+..+
T Consensus 23 ~g~iD~~~l~~lv~-~li~~Gv~Gi~v~GstGE 54 (309)
T cd00952 23 TDTVDLDETARLVE-RLIAAGVDGILTMGTFGE 54 (309)
T ss_pred CCCcCHHHHHHHHH-HHHHcCCCEEEECccccc
Confidence 35666655544332 334466666555544443
|
HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.43 E-value=2.5 Score=38.78 Aligned_cols=120 Identities=16% Similarity=0.186 Sum_probs=84.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCC-ccC-HHHHHHHHHHHHHhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIG-VGT-PGTMRLMLEDVLTVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G-~~~-P~~~~~~~~~~~~~~~ 214 (327)
.+.+++.|++.|+-+-+ |. -.+.|.+..+.+.+.+.+...| .+....- .+. -..+..++..+.+.++
T Consensus 6 ~~~ll~~Ake~~yAvpA-----fN-----~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~ 75 (286)
T COG0191 6 MKELLDKAKENGYAVPA-----FN-----INNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG 75 (286)
T ss_pred HHHHHHHHHHcCCceee-----ee-----ecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC
Confidence 37788999999987642 22 2577889999999999887754 3322211 233 3667778888888888
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
+|+.+| -|-|....-+..|+++|..- +|+|...+=| -..-+.+++...+..|+
T Consensus 76 -vPV~lH--lDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE--------Ni~~tkevv~~ah~~gv 130 (286)
T COG0191 76 -VPVALH--LDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE--------NIAITKEVVEFAHAYGV 130 (286)
T ss_pred -CCEEEE--CCCCCCHHHHHHHHhcCCceEEecCCcCCHHH--------HHHHHHHHHHHHHHcCC
Confidence 677765 57788899999999999864 7999886655 13345667777765543
|
|
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=90.41 E-value=14 Score=33.87 Aligned_cols=67 Identities=16% Similarity=-0.023 Sum_probs=51.0
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+-++.+.++|+|.| |-+...+| ..+++..++..+ +.+ +.++-. .+...+.|.+.|++.|-+++.|.-
T Consensus 78 ~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l----~MAD~s-tleEal~a~~~Gad~I~TTl~gyT 144 (283)
T cd04727 78 VEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVP----FVCGAR-NLGEALRRISEGAAMIRTKGEAGT 144 (283)
T ss_pred HHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCc----EEccCC-CHHHHHHHHHCCCCEEEecCCCCC
Confidence 35778999999999 88888889 577888888876 333 233332 267889999999999999987443
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=90.32 E-value=7.9 Score=36.23 Aligned_cols=126 Identities=16% Similarity=0.181 Sum_probs=72.5
Q ss_pred EEeeeccCCCCCC----------CChHHHHHHHHHHHHcCcC-EEEecCCCC--ccCHHHHHHHHHHHHHhcCCCe-EEE
Q psy12516 155 YISCVVGCPYEGA----------VPPHNVTRVATALYKMGCY-EISLGDTIG--VGTPGTMRLMLEDVLTVIPADR-LAV 220 (327)
Q Consensus 155 ~l~~~~g~~~~~r----------~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G--~~~P~~~~~~~~~~~~~~~~~~-l~~ 220 (327)
++.+.|++-|+++ .++|++.+..+.+.+..-+ .=..=|-.| .+.| -+.++++.+++. +.+. ++.
T Consensus 118 nlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP-~l~~lVqalk~~-~~v~vVSm 195 (414)
T COG2100 118 NLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYP-HLVDLVQALKEH-KGVEVVSM 195 (414)
T ss_pred cceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccch-hHHHHHHHHhcC-CCceEEEE
Confidence 3455665555543 4789999998888876433 222335444 2333 456667777754 5433 444
Q ss_pred eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCC
Q psy12516 221 HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKK 300 (327)
Q Consensus 221 H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~ 300 (327)
.+|-. -+.--..-+-.+||.|+|+.|+..+-. .+..+| .|.+ .+|++++.++++++.. +++
T Consensus 196 QTng~-~L~~~lv~eLeeAGLdRiNlSv~aLDp--------------k~Ak~L--~G~~-dYdv~kvle~aE~i~~-a~i 256 (414)
T COG2100 196 QTNGV-LLSKKLVDELEEAGLDRINLSVDALDP--------------KLAKML--AGRK-DYDVKKVLEVAEYIAN-AGI 256 (414)
T ss_pred eeCce-eccHHHHHHHHHhCCceEEeecccCCH--------------HHHHHh--cCcc-ccCHHHHHHHHHHHHh-CCC
Confidence 44432 233334445568999999999996654 233333 3333 4666777777766665 444
Q ss_pred C
Q psy12516 301 P 301 (327)
Q Consensus 301 ~ 301 (327)
.
T Consensus 257 d 257 (414)
T COG2100 257 D 257 (414)
T ss_pred C
Confidence 3
|
|
| >TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family | Back alignment and domain information |
|---|
Probab=90.31 E-value=4.2 Score=38.67 Aligned_cols=79 Identities=14% Similarity=0.169 Sum_probs=57.1
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCc-cCHHHHHHHHHHHHHhcCCCeEEE-------eecCCcCcHHHHHHHHH-
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGV-GTPGTMRLMLEDVLTVIPADRLAV-------HCHDTYGQALANILTAM- 237 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~~~~l~~-------H~Hn~~g~a~an~l~a~- 237 (327)
+.++|++.+.++.+.+.|++++.+.+.... ...+.+.++++.+++.+|++.+.. |.-+..|+.....+..+
T Consensus 78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~Lk 157 (351)
T TIGR03700 78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDELK 157 (351)
T ss_pred CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 468999999999999999999999743222 234688899999999888643332 11234677777766655
Q ss_pred HhcCceee
Q psy12516 238 EFGISVFD 245 (327)
Q Consensus 238 ~~G~~~vd 245 (327)
++|++.+.
T Consensus 158 eAGld~~~ 165 (351)
T TIGR03700 158 EAGLDSMP 165 (351)
T ss_pred HcCCCcCC
Confidence 68998775
|
Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=90.30 E-value=2.9 Score=38.21 Aligned_cols=82 Identities=17% Similarity=0.125 Sum_probs=67.0
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeecC-CcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHD-TYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn-~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+++..+ .+++.+|.-. +.--++..+..|.++|
T Consensus 13 g~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G 92 (281)
T cd00408 13 GEVDLDALRRLVEFLIEAGVDGLVVLGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEEAG 92 (281)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999 5788888888988888764 4678887764 3444677777888999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 93 ad~v~v~ 99 (281)
T cd00408 93 ADGVLVV 99 (281)
T ss_pred CCEEEEC
Confidence 9987653
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=90.30 E-value=2.2 Score=39.70 Aligned_cols=81 Identities=17% Similarity=0.153 Sum_probs=70.6
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEE-eecCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAV-HCHDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~-H~Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.+++..+++...+ +|+-. ...|+..-+++.+..|-+.|
T Consensus 20 g~vD~~a~~~lv~~li~~Gv~gi~~~GttGE~~~Ls~eEr~~v~~~~v~~~~grvpviaG~g~~~t~eai~lak~a~~~G 99 (299)
T COG0329 20 GSVDEEALRRLVEFLIAAGVDGLVVLGTTGESPTLTLEERKEVLEAVVEAVGGRVPVIAGVGSNSTAEAIELAKHAEKLG 99 (299)
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECCCCccchhcCHHHHHHHHHHHHHHHCCCCcEEEecCCCcHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 58899999999999988754 56666 55677899999999999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
+|.+=+
T Consensus 100 ad~il~ 105 (299)
T COG0329 100 ADGILV 105 (299)
T ss_pred CCEEEE
Confidence 987654
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=90.28 E-value=15 Score=33.93 Aligned_cols=82 Identities=11% Similarity=0.022 Sum_probs=59.5
Q ss_pred CCCCCChHHHHHHHHHHHHcCcCEEEecCCC--------------CccCHHHHHHHHHHHHHhc--CCCeEEEeec----
Q psy12516 164 YEGAVPPHNVTRVATALYKMGCYEISLGDTI--------------GVGTPGTMRLMLEDVLTVI--PADRLAVHCH---- 223 (327)
Q Consensus 164 ~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~--------------G~~~P~~~~~~~~~~~~~~--~~~~l~~H~H---- 223 (327)
+.+ -++..+.+.++.+.+.|+..|.|-|.. .+.++++..+.++..++.. ++..|-..+-
T Consensus 86 d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~ 164 (285)
T TIGR02320 86 DTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQTTEDFMIIARVESLIL 164 (285)
T ss_pred CCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhccCCCeEEEEecccccc
Confidence 445 689999999999999999999998864 3567788888888887653 3334444411
Q ss_pred -CCcCcHHHHHHHHHHhcCceeee
Q psy12516 224 -DTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 224 -n~~g~a~an~l~a~~~G~~~vd~ 246 (327)
...--++.-+.+..++|||.|=.
T Consensus 165 ~~~~~eAi~Ra~ay~eAGAD~ifv 188 (285)
T TIGR02320 165 GKGMEDALKRAEAYAEAGADGIMI 188 (285)
T ss_pred cCCHHHHHHHHHHHHHcCCCEEEe
Confidence 12335677778889999997654
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=90.25 E-value=3.3 Score=38.67 Aligned_cols=79 Identities=13% Similarity=0.097 Sum_probs=49.5
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCC-CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHH-HHHHHHHHhcCceee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL-ANILTAMEFGISVFD 245 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~-an~l~a~~~G~~~vd 245 (327)
.+++++.+.++.+.+.|++.+.|... ........+.++++.+++. +++.+ |.+. |.-. .......++|++.+.
T Consensus 70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l~i--~~~~--g~~~~e~l~~Lk~aG~~~v~ 144 (323)
T PRK07094 70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDVAI--TLSL--GERSYEEYKAWKEAGADRYL 144 (323)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCceE--EEec--CCCCHHHHHHHHHcCCCEEE
Confidence 47888888888888888888888632 2234567788888888875 44333 3322 3222 223334477888877
Q ss_pred eccccC
Q psy12516 246 SSIAGL 251 (327)
Q Consensus 246 ~s~~G~ 251 (327)
.++-+.
T Consensus 145 ~glEs~ 150 (323)
T PRK07094 145 LRHETA 150 (323)
T ss_pred eccccC
Confidence 655543
|
|
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=90.16 E-value=3 Score=39.92 Aligned_cols=87 Identities=18% Similarity=0.197 Sum_probs=52.7
Q ss_pred CCCChHHHHHHHHHHHH--cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCce
Q psy12516 166 GAVPPHNVTRVATALYK--MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISV 243 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~--~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~ 243 (327)
+..+.+.+.+-+.++.. .|.+.+.-+--.+.-+|+++.++|..||+..|..||++-.=-..+....... +.++|+|.
T Consensus 152 G~Lp~~KV~~~ia~~R~~~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~ 230 (368)
T PF01645_consen 152 GHLPGEKVTEEIARIRGVPPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADF 230 (368)
T ss_dssp -EE-GGG--HHHHHHHTS-TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SE
T ss_pred ceechhhchHHHHHHhCCCCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCE
Confidence 35677777777776664 4678888888888999999999999999999889999876655555443333 78999998
Q ss_pred e--eeccccCCC
Q psy12516 244 F--DSSIAGLGG 253 (327)
Q Consensus 244 v--d~s~~G~G~ 253 (327)
| |++=.|-|.
T Consensus 231 ItIDG~~GGTGA 242 (368)
T PF01645_consen 231 ITIDGAEGGTGA 242 (368)
T ss_dssp EEEE-TT---SS
T ss_pred EEEeCCCCCCCC
Confidence 5 554444443
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=90.14 E-value=11 Score=34.25 Aligned_cols=146 Identities=18% Similarity=0.203 Sum_probs=83.7
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+++.|.|.+.+....... ..++..+.+.++.+.+++.|+.+.+. .+..|...+...+++.+...++.+.+
T Consensus 101 ~A~~~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~vi-~~~~g~~~e~~~~~~~i~~a~~~a~e 171 (267)
T PRK07226 101 EAIKLGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLAM-MYPRGPGIKNEYDPEVVAHAARVAAE 171 (267)
T ss_pred HHHHcCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEEE-EecCCCccCCCccHHHHHHHHHHHHH
Confidence 3466777765543222110 12334777888899999999987542 23223212233567788888899999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
.|+|.|-.. ..| .+ +.++.+.+..+ +|+-. -..+|+-.+..+.-.++++|++.+..+-.=+
T Consensus 172 ~GAD~vKt~-~~~--~~----~~l~~~~~~~~-ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~-------- 235 (267)
T PRK07226 172 LGADIVKTN-YTG--DP----ESFREVVEGCP-VPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVF-------- 235 (267)
T ss_pred HCCCEEeeC-CCC--CH----HHHHHHHHhCC-CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhh--------
Confidence 999988654 112 22 33444444322 34332 1122555678888889999999554332211
Q ss_pred CCCCccHHHHHHHHHh
Q psy12516 260 ASGNVATEDLVYMLEG 275 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~ 275 (327)
...+.++.+..|+.
T Consensus 236 --~~~~p~~~~~~l~~ 249 (267)
T PRK07226 236 --QHEDPEAITRAISA 249 (267)
T ss_pred --cCCCHHHHHHHHHH
Confidence 22445666666665
|
|
| >PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=90.10 E-value=10 Score=37.38 Aligned_cols=85 Identities=15% Similarity=0.153 Sum_probs=49.7
Q ss_pred HHHHHHhhhhhcccCcchhhh-hhhhhHHHHH-HhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCC
Q psy12516 94 EDLVYMLEGKSMQCGVKEIAV-FASASEMFSK-RNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 94 e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~-~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
++++..+.+. ..|+..+++ +.+.|+...+ .+-+.+ .+...+.++.+++. |+.+...+. +|.|.+ +
T Consensus 245 ~ell~~~~~~--~~g~~~l~iglQSgsd~vLk~m~R~~t----~~~~~~~v~~lr~~~pgi~i~td~I--vGfPgE---T 313 (445)
T PRK14340 245 ESLVRTIAAR--PNICNHIHLPVQSGSSRMLRRMNRGHT----IEEYLEKIALIRSAIPGVTLSTDLI--AGFCGE---T 313 (445)
T ss_pred HHHHHHHHhC--CCCCCeEEECCCcCCHHHHHhcCCCCC----HHHHHHHHHHHHHhCCCCEEeccEE--EECCCC---C
Confidence 4555555332 224555555 3344544332 222223 45577788888887 888765554 566765 5
Q ss_pred hHHHHHHHHHHHHcCcCEEE
Q psy12516 170 PHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+..+.+.+.+.+.+.
T Consensus 314 ~edf~~tl~~~~~~~~~~~~ 333 (445)
T PRK14340 314 EEDHRATLSLMEEVRFDSAF 333 (445)
T ss_pred HHHHHHHHHHHHhcCCCEEe
Confidence 67777777888888777543
|
|
| >cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway | Back alignment and domain information |
|---|
Probab=90.02 E-value=15 Score=33.41 Aligned_cols=156 Identities=19% Similarity=0.230 Sum_probs=85.7
Q ss_pred HHHHHHcCcCEEEecCCc----------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEe
Q psy12516 4 ASALYKMGCYEISLGDTI----------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 73 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~----------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~ 73 (327)
++.+.++|+|.|...|+. +..+..++...++.+.+..+ .++ -..|.
T Consensus 25 A~l~e~aG~d~i~vGds~~~~~lG~pDt~~vtl~em~~~~~~V~r~~~-~p~-----------------------viaD~ 80 (254)
T cd06557 25 AKLADEAGVDVILVGDSLGMVVLGYDSTLPVTLDEMIYHTRAVRRGAP-RAL-----------------------VVADM 80 (254)
T ss_pred HHHHHHcCCCEEEECHHHHHHHcCCCCCCCcCHHHHHHHHHHHHhcCC-CCe-----------------------EEEeC
Confidence 566788899999888875 34556666666666666554 221 12332
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEE
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVR 153 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~ 153 (327)
++|+ .+ .++|+.+....+.-.+.|++.+.+-+. ....+.|+.+.+.|+.|.
T Consensus 81 ---~fg~-------y~-~~~~~av~~a~r~~~~aGa~aVkiEd~------------------~~~~~~I~al~~agipV~ 131 (254)
T cd06557 81 ---PFGS-------YQ-TSPEQALRNAARLMKEAGADAVKLEGG------------------AEVAETIRALVDAGIPVM 131 (254)
T ss_pred ---CCCc-------cc-CCHHHHHHHHHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHcCCCee
Confidence 2221 11 234555554444444467766665432 124455667778887765
Q ss_pred EEEeee------ccCC-CCCCCC--hHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 154 GYISCV------VGCP-YEGAVP--PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 154 ~~l~~~------~g~~-~~~r~~--~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.+... ++.. -.+|.+ .+.+.+-++.+.++|++.|.+.-. |. ++.+.+.+.++-+.|++
T Consensus 132 gHiGL~pq~~~~~gg~~~~grt~~~a~~~i~ra~a~~~AGA~~i~lE~v-----~~---~~~~~i~~~v~iP~igi 199 (254)
T cd06557 132 GHIGLTPQSVNQLGGYKVQGKTEEEAERLLEDALALEEAGAFALVLECV-----PA---ELAKEITEALSIPTIGI 199 (254)
T ss_pred ccccccceeeeccCCceeccCCHHHHHHHHHHHHHHHHCCCCEEEEcCC-----CH---HHHHHHHHhCCCCEEEe
Confidence 443320 1000 012333 456777788888999999987532 33 35566666654333433
|
Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis. |
| >TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB | Back alignment and domain information |
|---|
Probab=89.97 E-value=21 Score=35.15 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
+++..+.++.+.+.|+.+.+..... | ..+.+.+.++++.+.+.|++.+.+
T Consensus 173 ~e~~l~~l~~l~~~G~~v~v~~vlI---p---GiND~~i~~l~~~~~~lg~~~~nl 222 (442)
T TIGR01290 173 IERQLEGLEKLTERGILVKVNSVLI---P---GINDEHLVEVSKQVKELGAFLHNV 222 (442)
T ss_pred HHHHHHHHHHHHhCCCeEEEEEEee---C---CcCHHHHHHHHHHHHhCCCcEEEe
Confidence 4566677788888899876543332 2 255688999999999999876655
|
This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=89.86 E-value=14 Score=32.81 Aligned_cols=92 Identities=15% Similarity=0.135 Sum_probs=54.9
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-cCEEE----ecCCCCccCHHHHHHHHHHHHHhc
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-CYEIS----LGDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-~~~i~----l~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
...++..++.|..+...+. | .++. +..+.+.+.| +|.|. .+.+.|...|....+.++.+++..
T Consensus 105 ~~~~~~i~~~g~~iGls~~-----~----~t~~---~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~~~~~~i~~~~~~~ 172 (229)
T PLN02334 105 HRLIQQIKSAGMKAGVVLN-----P----GTPV---EAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKY 172 (229)
T ss_pred HHHHHHHHHCCCeEEEEEC-----C----CCCH---HHHHHHHhccCCCEEEEEEEecCCCccccCHHHHHHHHHHHHhC
Confidence 3456677777876653221 1 1222 2233344443 77652 233444445556666778888776
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+..++.+ +-|.-..|.-...++|++.|=+
T Consensus 173 ~~~~I~a----~GGI~~e~i~~l~~aGad~vvv 201 (229)
T PLN02334 173 PELDIEV----DGGVGPSTIDKAAEAGANVIVA 201 (229)
T ss_pred CCCcEEE----eCCCCHHHHHHHHHcCCCEEEE
Confidence 6555554 5578888999999999998743
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=89.85 E-value=14 Score=32.93 Aligned_cols=92 Identities=15% Similarity=0.089 Sum_probs=51.6
Q ss_pred hHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh-cCceeee
Q psy12516 170 PHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF-GISVFDS 246 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~-G~~~vd~ 246 (327)
.....++++.+.+.|++.|.+ -+..|..... -.++++.+++..+ +|+..-.--. ........++. |++.+=.
T Consensus 148 ~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~-~~~~i~~i~~~~~-~pvia~GGi~---~~~di~~~l~~~g~dgv~v 222 (243)
T cd04731 148 GLDAVEWAKEVEELGAGEILLTSMDRDGTKKGY-DLELIRAVSSAVN-IPVIASGGAG---KPEHFVEAFEEGGADAALA 222 (243)
T ss_pred CCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCC-CHHHHHHHHhhCC-CCEEEeCCCC---CHHHHHHHHHhCCCCEEEE
Confidence 445677888899999998888 4444443322 2455666766543 4666543211 12334444554 6665432
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 247 SIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 247 s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
|. ++ -.|..+++++...|++
T Consensus 223 -----g~-al---~~~~~~~~~~~~~~~~ 242 (243)
T cd04731 223 -----AS-IF---HFGEYTIAELKEYLAE 242 (243)
T ss_pred -----eH-HH---HcCCCCHHHHHHHHhh
Confidence 11 11 1456678888777764
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK01060 endonuclease IV; Provisional | Back alignment and domain information |
|---|
Probab=89.79 E-value=15 Score=33.27 Aligned_cols=215 Identities=16% Similarity=0.267 Sum_probs=104.7
Q ss_pred eeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHH
Q psy12516 44 RLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMF 122 (327)
Q Consensus 44 ~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~ 122 (327)
++|+|..-..+ +..++.-+ +.|.+.||..+..-.. |. ..... ++-+..+++..-+.|+....+..... ..
T Consensus 3 ~~g~~~~~~~~--~~~~l~~~~~~G~d~vEl~~~~p~~--~~---~~~~~-~~~~~~lk~~~~~~gl~~~~~~~h~~-~~ 73 (281)
T PRK01060 3 LIGAHVSAAGG--LEGAVAEAAEIGANAFMIFTGNPQQ--WK---RKPLE-ELNIEAFKAACEKYGISPEDILVHAP-YL 73 (281)
T ss_pred eEEEeeecCCC--HHHHHHHHHHcCCCEEEEECCCCCC--Cc---CCCCC-HHHHHHHHHHHHHcCCCCCceEEecc-eE
Confidence 68888776666 55555544 8999999976653222 11 11222 33344455555555554211110000 00
Q ss_pred HHHhhc----CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChH-HHHHHHHHHHH-----cCcCEEEecC
Q psy12516 123 SKRNIN----CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPH-NVTRVATALYK-----MGCYEISLGD 192 (327)
Q Consensus 123 ~~~~l~----~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e-~l~~~~~~~~~-----~g~~~i~l~D 192 (327)
.++. ..++..++.+++.++.|++.|....+. ..|.... ..+.+ .+..+.+.+.+ .|+ .|.|--
T Consensus 74 --~nl~~~d~~~r~~s~~~~~~~i~~A~~lga~~vv~---h~G~~~~-~~~~~~~~~~~~e~l~~l~~~~~gv-~l~iEn 146 (281)
T PRK01060 74 --INLGNPNKEILEKSRDFLIQEIERCAALGAKLLVF---HPGSHLG-DIDEEDCLARIAESLNEALDKTQGV-TIVLEN 146 (281)
T ss_pred --ecCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE---cCCcCCC-CCcHHHHHHHHHHHHHHHHhcCCCC-EEEEec
Confidence 0110 012345778999999999999974332 1221111 11222 33333333332 232 345544
Q ss_pred CCCc-----cCHHHHHHHHHHHHHhcCCCeEEE-----eecCCcCcHHH----HHHHHHHh-----cCceeeeccc--cC
Q psy12516 193 TIGV-----GTPGTMRLMLEDVLTVIPADRLAV-----HCHDTYGQALA----NILTAMEF-----GISVFDSSIA--GL 251 (327)
Q Consensus 193 t~G~-----~~P~~~~~~~~~~~~~~~~~~l~~-----H~Hn~~g~a~a----n~l~a~~~-----G~~~vd~s~~--G~ 251 (327)
+.+. -+|.++.++++.+.. +. .+++ |.+.. |.-.. ..+..+.. -+.+++..=+ +.
T Consensus 147 ~~~~~~~~~~~~~~~~~l~~~v~~--~~-~vg~~lD~gH~~~~-g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~ 222 (281)
T PRK01060 147 TAGQGSELGRRFEELARIIDGVED--KS-RVGVCLDTCHAFAA-GYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEF 222 (281)
T ss_pred CCCCCCcccCCHHHHHHHHHhcCC--cc-cEEEEEeHHhHhhc-CCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcc
Confidence 3331 367787777765532 11 1443 44421 22222 44444431 3444544322 11
Q ss_pred CC---CCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 252 GG---CPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 252 G~---~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
|. +-..+| .|+.+.+.++..|++.||+
T Consensus 223 ~~~~d~H~~~G-~G~id~~~~~~~L~~~~y~ 252 (281)
T PRK01060 223 GSRKDRHANLG-EGTIGFDALRYIVHDPRFD 252 (281)
T ss_pred cCCCCcccCCc-CCcCCHHHHHHHHhCcccC
Confidence 21 112334 6899999999999987764
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=89.74 E-value=15 Score=36.53 Aligned_cols=68 Identities=21% Similarity=0.188 Sum_probs=50.3
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|+|.|.+ |++ |. -..+.++++.+++.+|+.++-.---.+ ...+..++++|++.|-++++
T Consensus 230 ~~a~~Lv~aGvd~i~~-D~a~~~--~~~~~~~i~~ik~~~p~~~v~agnv~t----~~~a~~l~~aGad~v~vgig 298 (479)
T PRK07807 230 AKARALLEAGVDVLVV-DTAHGH--QEKMLEALRAVRALDPGVPIVAGNVVT----AEGTRDLVEAGADIVKVGVG 298 (479)
T ss_pred HHHHHHHHhCCCEEEE-eccCCc--cHHHHHHHHHHHHHCCCCeEEeeccCC----HHHHHHHHHcCCCEEEECcc
Confidence 5678899999999776 766 65 456778899999999976655432333 34567778999999987665
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=89.73 E-value=4.8 Score=36.92 Aligned_cols=64 Identities=17% Similarity=0.079 Sum_probs=49.0
Q ss_pred HHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
-++.+.++|+|.| |-+-..+| ..+++...+..+ .+++- ++-. .+...+.+++.|++.|-++..|
T Consensus 81 Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfm----ad~~-~l~EAlrai~~GadmI~Tt~e~ 144 (287)
T TIGR00343 81 EAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFV----CGAR-DLGEALRRINEGAAMIRTKGEA 144 (287)
T ss_pred HHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEE----ccCC-CHHHHHHHHHCCCCEEeccccC
Confidence 4678999999999 88899999 567788888877 34433 2222 2677899999999999988763
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.70 E-value=16 Score=33.80 Aligned_cols=95 Identities=9% Similarity=0.067 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC-EEEecCCCCc-cCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY-EISLGDTIGV-GTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~ 214 (327)
.++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+.. +|.+....-. ..+..+..++..+.++..
T Consensus 5 ~~~~~l~~A~~~~yaV~A-----fn-----~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK06801 5 SLANGLAHARKHGYALGA-----FN-----VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC
Confidence 467788999999998752 32 25788999999999998876 4444443332 445667777777777664
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
+|+.+|. |-|.-......|+++|++-|
T Consensus 75 -vpV~lHl--DH~~~~e~i~~Ai~~GftSV 101 (286)
T PRK06801 75 -IPVVLNL--DHGLHFEAVVRALRLGFSSV 101 (286)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHhCCcEE
Confidence 5777765 45777888999999999865
|
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=89.64 E-value=3.4 Score=39.59 Aligned_cols=77 Identities=16% Similarity=0.235 Sum_probs=56.6
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCc-cC-HHHHHHHHHHHHHhcCCCeEEEee---------cCCcCcHHHHHHH
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGV-GT-PGTMRLMLEDVLTVIPADRLAVHC---------HDTYGQALANILT 235 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~-P~~~~~~~~~~~~~~~~~~l~~H~---------Hn~~g~a~an~l~ 235 (327)
+.++|++.+.++++.+.|+.++.|..-.+. .. ++.+.++++.+|+.+|+ +.+|. -.+.|+..-..+.
T Consensus 90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--i~i~a~s~~ei~~~~~~~G~~~~e~l~ 167 (371)
T PRK07360 90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--IHLHAFSPMEVYFAAREDGLSYEEVLK 167 (371)
T ss_pred eCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--cceeeCCHHHHHHHHhhcCCCHHHHHH
Confidence 578999999999999999999999822122 22 46788899999987775 33332 2367887777655
Q ss_pred HH-HhcCceee
Q psy12516 236 AM-EFGISVFD 245 (327)
Q Consensus 236 a~-~~G~~~vd 245 (327)
.+ ++|++.+.
T Consensus 168 ~LkeAGld~~~ 178 (371)
T PRK07360 168 ALKDAGLDSMP 178 (371)
T ss_pred HHHHcCCCcCC
Confidence 55 79999885
|
|
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=89.62 E-value=17 Score=33.58 Aligned_cols=98 Identities=15% Similarity=0.067 Sum_probs=65.6
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
...++.++-++...++|+|.|.+. .+..+++++.++++.+...+|++|+-+.. ..++.- ..-..-+.|+++|-..
T Consensus 166 ~~~~eAi~Ra~ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~--~~~eL~~lG~~~v~~~ 240 (285)
T TIGR02320 166 KGMEDALKRAEAYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTT--PTDEFRDAGISVVIYA 240 (285)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCC--CHHHHHHcCCCEEEEh
Confidence 356788888999999999999886 34678999999999998878777875432 222221 2345557799987543
Q ss_pred cccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 248 IAGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
..-+ |+-...+++.+..+.+.|.
T Consensus 241 ~~~~--------~aa~~a~~~~~~~~~~~g~ 263 (285)
T TIGR02320 241 NHLL--------RAAYAAMQQVAERILEHGR 263 (285)
T ss_pred HHHH--------HHHHHHHHHHHHHHHHcCC
Confidence 3221 3445556666666665443
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants | Back alignment and domain information |
|---|
Probab=89.61 E-value=11 Score=34.62 Aligned_cols=100 Identities=15% Similarity=0.143 Sum_probs=74.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
+..+.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+..+ .+++-+++= ++..-++..+..|.++|
T Consensus 17 g~id~~~~~~~i~~l~~~Gv~gl~~~GstGE~~~Lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~st~~~i~~a~~a~~~G 96 (289)
T PF00701_consen 17 GSIDEDALKRLIDFLIEAGVDGLVVLGSTGEFYSLTDEERKELLEIVVEAAAGRVPVIAGVGANSTEEAIELARHAQDAG 96 (289)
T ss_dssp SSB-HHHHHHHHHHHHHTTSSEEEESSTTTTGGGS-HHHHHHHHHHHHHHHTTSSEEEEEEESSSHHHHHHHHHHHHHTT
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECCCCcccccCCHHHHHHHHHHHHHHccCceEEEecCcchhHHHHHHHHHHHhhcC
Confidence 578999999999999999999999999998 5888888888988888764 466666554 47777888888899999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+-..-- + ....+-++++.+++.
T Consensus 97 ad~v~v~~P------~----~~~~s~~~l~~y~~~ 121 (289)
T PF00701_consen 97 ADAVLVIPP------Y----YFKPSQEELIDYFRA 121 (289)
T ss_dssp -SEEEEEES------T----SSSCCHHHHHHHHHH
T ss_pred ceEEEEecc------c----cccchhhHHHHHHHH
Confidence 998765332 1 123456666665553
|
The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A .... |
| >COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.60 E-value=11 Score=34.72 Aligned_cols=118 Identities=15% Similarity=0.157 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc-----------cCHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV-----------GTPGTMR 203 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-----------~~P~~~~ 203 (327)
++.++++.+. ..+.|.+-+..-|| ++..+.+.++++.++|+-.+.|-|.++- ..+.++.
T Consensus 67 ~~~vrrI~~a---~~lPv~vD~dtGfG-------~~~nvartV~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v 136 (289)
T COG2513 67 LADARRITDA---VDLPVLVDIDTGFG-------EALNVARTVRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMV 136 (289)
T ss_pred HHHHHHHHhh---cCCceEEeccCCCC-------cHHHHHHHHHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHH
Confidence 4444444333 36666554444333 4678889999999999999999999883 5567777
Q ss_pred HHHHHHHHhcCCCeEEEee------cCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhC
Q psy12516 204 LMLEDVLTVIPADRLAVHC------HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM 276 (327)
Q Consensus 204 ~~~~~~~~~~~~~~l~~H~------Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~ 276 (327)
+.|+..++..++.++.+-. +.-+.-|+.-+.+-+++|+|.|= ..|..+.|++....+..
T Consensus 137 ~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eAGAD~if--------------~~al~~~e~i~~f~~av 201 (289)
T COG2513 137 DRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEAGADAIF--------------PEALTDLEEIRAFAEAV 201 (289)
T ss_pred HHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHcCCcEEc--------------cccCCCHHHHHHHHHhc
Confidence 7788888776654444432 33345567788888999999764 23455566666655543
|
|
| >PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2 | Back alignment and domain information |
|---|
Probab=89.53 E-value=11 Score=33.61 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=53.5
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCc-HHHHHHHHHHhcCceee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQ-ALANILTAMEFGISVFD 245 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~-a~an~l~a~~~G~~~vd 245 (327)
.+.+.-.+.++.+.+.+.+.+.|.-........+..+++..+...+| +.|..+ +|. ...+.+.++..|+|.+|
T Consensus 65 ~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l-----~G~~~P~~i~~~v~~GvD~fD 139 (238)
T PF01702_consen 65 DDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYL-----LGVGTPEEILEAVYLGVDLFD 139 (238)
T ss_dssp T-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEE-----TTB-SHHHHHHHHHTT--EEE
T ss_pred CCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceec-----cCCCCHHHHHHHHHcCCcEEc
Confidence 45555667778888867899988876666678899999999998886 444444 244 46888999999999999
Q ss_pred eccc
Q psy12516 246 SSIA 249 (327)
Q Consensus 246 ~s~~ 249 (327)
++..
T Consensus 140 s~~p 143 (238)
T PF01702_consen 140 SSYP 143 (238)
T ss_dssp ESHH
T ss_pred chHH
Confidence 8874
|
4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A .... |
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=89.46 E-value=9.8 Score=33.28 Aligned_cols=72 Identities=18% Similarity=0.340 Sum_probs=48.1
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHH-HHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPG-TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~-~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
|+-++.+.+.|++.|.+ |-+=...|. .+.++++. ...|+.-+- -|-. .+...+.|.++|++.|-+++.|.-
T Consensus 88 lkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~--~k~~~~l~M----AD~S-t~ee~l~a~~~G~D~IGTTLsGYT 159 (229)
T COG3010 88 LKEVDALAEAGADIIAF-DATDRPRPDGDLEELIAR--IKYPGQLAM----ADCS-TFEEGLNAHKLGFDIIGTTLSGYT 159 (229)
T ss_pred HHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHH--hhcCCcEEE----eccC-CHHHHHHHHHcCCcEEeccccccc
Confidence 35678899999999887 666667777 56666655 222321111 1111 245567888999999999999887
Q ss_pred C
Q psy12516 80 G 80 (327)
Q Consensus 80 ~ 80 (327)
+
T Consensus 160 ~ 160 (229)
T COG3010 160 G 160 (229)
T ss_pred C
Confidence 6
|
|
| >TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E | Back alignment and domain information |
|---|
Probab=89.46 E-value=12 Score=35.50 Aligned_cols=50 Identities=8% Similarity=0.127 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 134 SLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 134 ~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.++++.+.++..++.|+.+.+.... .+.+.+++.++++.+.+.|++.+.+
T Consensus 130 ~f~~v~~~i~~l~~~g~~v~v~~vv-------~~~N~~~l~~~~~~~~~lg~~~i~~ 179 (358)
T TIGR02109 130 AFEQKLAMARAVKAAGLPLTLNFVI-------HRHNIDQIPEIIELAIELGADRVEL 179 (358)
T ss_pred HHHHHHHHHHHHHhCCCceEEEEEe-------ccCCHHHHHHHHHHHHHcCCCEEEE
Confidence 3666777788888999987644322 2567788899999999999998776
|
This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. |
| >PRK06582 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=89.37 E-value=16 Score=35.26 Aligned_cols=130 Identities=12% Similarity=0.029 Sum_probs=75.4
Q ss_pred CcCEEEecCCc-cccCHHHHHHHHHHHHhhcC--C-CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCC
Q psy12516 11 GCYEISLGDTI-GVGTPGTMRLMLEDVLTVIP--A-DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYAR 85 (327)
Q Consensus 11 g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~--~-~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~ 85 (327)
.++.|+|..-+ -.++|..+.++++.+++.++ . .++.+.++-+ .-....+.++ ++|+.+|..++..+..
T Consensus 62 ~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~--~~~~e~l~~l~~~GvnRiSiGvQS~~d----- 134 (390)
T PRK06582 62 YIKSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPT--SFETEKFKAFKLAGINRVSIGVQSLKE----- 134 (390)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCC--cCCHHHHHHHHHCCCCEEEEECCcCCH-----
Confidence 36789998844 57889999999999998653 2 4455555332 2223555666 5888888877664432
Q ss_pred CccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC
Q psy12516 86 GASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165 (327)
Q Consensus 86 ~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~ 165 (327)
+++.. .+..+ + .+.+.+.++.+++.+..+.+.++ +|-|.
T Consensus 135 ---------~~L~~---lgR~h----------------------~----~~~~~~ai~~~~~~~~~v~~DlI--~GlPg- 173 (390)
T PRK06582 135 ---------DDLKK---LGRTH----------------------D----CMQAIKTIEAANTIFPRVSFDLI--YARSG- 173 (390)
T ss_pred ---------HHHHH---cCCCC----------------------C----HHHHHHHHHHHHHhCCcEEEEee--cCCCC-
Confidence 22111 11111 1 23344455666666555554444 45443
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
-+.+.+.+-++.+.+.+++.|.+
T Consensus 174 --qt~e~~~~~l~~~~~l~p~his~ 196 (390)
T PRK06582 174 --QTLKDWQEELKQAMQLATSHISL 196 (390)
T ss_pred --CCHHHHHHHHHHHHhcCCCEEEE
Confidence 34566777777777777775544
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.12 E-value=3.4 Score=41.11 Aligned_cols=68 Identities=16% Similarity=0.137 Sum_probs=52.8
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|+|.|. .|++ |. +..+.+.++.+++.+|+.++.. -.......+..++++|++.|+++++
T Consensus 231 e~a~~L~~agvdviv-vD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~g 299 (486)
T PRK05567 231 ERAEALVEAGVDVLV-VDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGIG 299 (486)
T ss_pred HHHHHHHHhCCCEEE-EECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECCC
Confidence 568889999999775 5654 54 4678888999999998888777 3344456788888999999997653
|
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=89.08 E-value=21 Score=33.92 Aligned_cols=123 Identities=12% Similarity=0.120 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe------cCC----CCccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL------GDT----IGVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l------~Dt----~G~~~P~~~~~ 204 (327)
++...+.++.+++.|+++...+. +| .. -+.+++.+..+.+.+.+++.+.+ ++| .-..+|.++.+
T Consensus 152 ~ed~~~~l~~ak~aGi~v~~g~I--iG-lg---Et~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~~~~s~~e~lr 225 (350)
T PRK06267 152 LDKIKEMLLKAKDLGLKTGITII--LG-LG---ETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENKPSVTTLEYMN 225 (350)
T ss_pred HHHHHHHHHHHHHcCCeeeeeEE--Ee-CC---CCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCCCCCCHHHHHH
Confidence 44566778899999999765433 33 11 24678888899999999885432 343 12367789999
Q ss_pred HHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee--eccccCCCCCCCCCCCCCccHHHHHHH
Q psy12516 205 MLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD--SSIAGLGGCPYARGASGNVATEDLVYM 272 (327)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd--~s~~G~G~~p~~~g~~Gn~~~e~~~~~ 272 (327)
++..+|-.+|..++-.=.--+.....+ .++.+||+.+- -...+++- ..|+..-+++-..
T Consensus 226 ~ia~~Rl~lP~~~I~~~~~~~~l~~~~---~~~~aGaN~i~~~p~~g~ylt------~~g~~~~~~~~~~ 286 (350)
T PRK06267 226 WVSSVRLNFPKIKIITGTWVDKLTNIG---PLIMSGSNVITKFPLFSMYGT------KEGKRVENEIRWT 286 (350)
T ss_pred HHHHHHHHCCCCCcchhhHhHhcchhh---HHhhcCcceeeccchhccCcc------cCCCCHHHHHHHh
Confidence 999999888986663211101111111 24557887762 11222232 4677777776654
|
|
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=89.07 E-value=4.1 Score=40.13 Aligned_cols=71 Identities=14% Similarity=0.087 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
+..+.++.+.+.|+|.|.+--+.| .-..+.+.++.+++.+|+++|.. -.......+..++++|++.|.+++
T Consensus 224 ~~~~r~~~L~~aG~d~I~vd~a~g--~~~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~ 294 (450)
T TIGR01302 224 FDKERAEALVKAGVDVIVIDSSHG--HSIYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGI 294 (450)
T ss_pred hHHHHHHHHHHhCCCEEEEECCCC--cHhHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECC
Confidence 444566688899999988855555 33567888999999998888777 223446778889999999999866
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional | Back alignment and domain information |
|---|
Probab=88.92 E-value=22 Score=33.96 Aligned_cols=50 Identities=10% Similarity=0.105 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
++++.+.++.+++.|+.+.+.... .+.+.+++.++++.+.+.|++.+.+.
T Consensus 140 f~~~~~~i~~l~~~g~~v~i~~vv-------~~~N~~~i~~~~~~~~~lgv~~i~~~ 189 (378)
T PRK05301 140 FAKKLAVARLVKAHGYPLTLNAVI-------HRHNIDQIPRIIELAVELGADRLELA 189 (378)
T ss_pred HHHHHHHHHHHHHCCCceEEEEEe-------ecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence 556667788888999987644321 25677889999999999999988764
|
|
| >PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.86 E-value=9.8 Score=37.89 Aligned_cols=80 Identities=15% Similarity=0.165 Sum_probs=62.8
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcH-HHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQA-LANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a-~an~l~a~~~G 240 (327)
+-..++.-.+.++.+.+.+.+.+.|.-.+..+ ...++.+++..++..+| +.|+.+. |.+ ..+...++..|
T Consensus 166 Gg~~~dLR~~sa~~l~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL~-----GvG~P~~i~~~V~lG 240 (487)
T PRK13533 166 GGTYPDLREESAREASKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHLF-----GAGHPMMFALAVALG 240 (487)
T ss_pred CCCCHHHHHHHHHHHHhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEEe-----CCCCHHHHHHHHHhC
Confidence 44677788888999999999999988765554 56889999999999884 4566652 555 56888999999
Q ss_pred Cceeeecccc
Q psy12516 241 ISVFDSSIAG 250 (327)
Q Consensus 241 ~~~vd~s~~G 250 (327)
+|.+|++..-
T Consensus 241 vDlFD~v~pt 250 (487)
T PRK13533 241 CDLFDSAAYA 250 (487)
T ss_pred CCceeccHHH
Confidence 9999987653
|
|
| >COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=88.69 E-value=11 Score=33.31 Aligned_cols=112 Identities=21% Similarity=0.196 Sum_probs=74.1
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHHHHHHHhcCC-Ce----EEEeecCCcCcHHH
Q psy12516 160 VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIPA-DR----LAVHCHDTYGQALA 231 (327)
Q Consensus 160 ~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~~~~~~~~~~-~~----l~~H~Hn~~g~a~a 231 (327)
.|.|.. ..+.+-=..-++.+.+.|+|.|-+.=..|. ...+.+++-++.+++..++ .. |+.-.=++--. ..
T Consensus 67 igFP~G-~~~t~~K~~Ea~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee~-~~ 144 (228)
T COG0274 67 IGFPLG-ANTTAVKAAEAREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEEK-RK 144 (228)
T ss_pred cCCCCC-CChHHHHHHHHHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHHH-HH
Confidence 344543 234443344467788899999888777775 3467888888888888775 22 33333334334 66
Q ss_pred HHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCC
Q psy12516 232 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282 (327)
Q Consensus 232 n~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~ 282 (327)
.+..++++|+|+|-+|-+. .+|++.+|++..+.+-.|.+.++
T Consensus 145 A~~i~~~aGAdFVKTSTGf---------~~~gAT~edv~lM~~~vg~~vgv 186 (228)
T COG0274 145 ACEIAIEAGADFVKTSTGF---------SAGGATVEDVKLMKETVGGRVGV 186 (228)
T ss_pred HHHHHHHhCCCEEEcCCCC---------CCCCCCHHHHHHHHHHhccCcee
Confidence 7788899999999988752 24688999888776654444443
|
|
| >TIGR03586 PseI pseudaminic acid synthase | Back alignment and domain information |
|---|
Probab=88.66 E-value=4.1 Score=38.39 Aligned_cols=94 Identities=16% Similarity=0.259 Sum_probs=67.5
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHH--HHHHHHhcC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLM--LEDVLTVIP 214 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~--~~~~~~~~~ 214 (327)
.++++.+.+.|..|- ++. +-.+.+++...++.+.+.|...|.| | +.+.-+|....++ +..+++.++
T Consensus 124 ~~LL~~va~~gkPvi--lst-------G~~t~~Ei~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~ 193 (327)
T TIGR03586 124 LPLIRYVAKTGKPII--MST-------GIATLEEIQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN 193 (327)
T ss_pred HHHHHHHHhcCCcEE--EEC-------CCCCHHHHHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC
Confidence 456677777788875 232 2368899999999999999865555 5 5666566554443 678888885
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.||++--|- .| ...+++|+.+||+.|+.
T Consensus 194 -~pVG~SDHt-~G--~~~~~aAva~GA~iIEk 221 (327)
T TIGR03586 194 -VPVGLSDHT-LG--ILAPVAAVALGACVIEK 221 (327)
T ss_pred -CCEEeeCCC-Cc--hHHHHHHHHcCCCEEEe
Confidence 689885553 34 68889999999998764
|
|
| >PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=88.57 E-value=4.1 Score=38.52 Aligned_cols=110 Identities=22% Similarity=0.300 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.+.+...+.++++.++|++.++++= .-.+-.+-++.+++..| +||..-.|-|+-+| +.|+++|++.+-
T Consensus 39 ~Dv~atv~Qi~~L~~aGceiVRvav-----~~~~~a~al~~I~~~~~-iPlvADIHFd~~lA----l~a~~~G~~~iR-- 106 (360)
T PRK00366 39 ADVEATVAQIKRLARAGCEIVRVAV-----PDMEAAAALPEIKKQLP-VPLVADIHFDYRLA----LAAAEAGADALR-- 106 (360)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcc-----CCHHHHHhHHHHHHcCC-CCEEEecCCCHHHH----HHHHHhCCCEEE--
Confidence 5667778888888999999776632 11356677899999887 69999999999776 889999999873
Q ss_pred cccCCCCCCCCCCCCCc-----cHHHHHHHHHhCCC--CCCCChhhHHHHHHHHHHhcCCCCC
Q psy12516 248 IAGLGGCPYARGASGNV-----ATEDLVYMLEGMGI--ETGADLTSLLRTGHYICGKLKKPSN 303 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~-----~~e~~~~~l~~~g~--~~~~d~~~l~~~~~~~~~~~~~~~~ 303 (327)
++ .||. .+++++...++.|+ ..|+|--.|. +.+.+..|.+.|
T Consensus 107 IN-----------PGNig~~~~~v~~vv~~ak~~~ipIRIGvN~GSL~---~~~~~~yg~~t~ 155 (360)
T PRK00366 107 IN-----------PGNIGKRDERVREVVEAAKDYGIPIRIGVNAGSLE---KDLLEKYGEPTP 155 (360)
T ss_pred EC-----------CCCCCchHHHHHHHHHHHHHCCCCEEEecCCccCh---HHHHHHcCCCCH
Confidence 22 4565 34566677776554 4567766554 333333455544
|
|
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=88.52 E-value=8.5 Score=34.58 Aligned_cols=79 Identities=14% Similarity=0.102 Sum_probs=58.2
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCC-----------ccCHHHHHHHHHHHHHhcCC---CeEEEe-----e-cCCcC
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIG-----------VGTPGTMRLMLEDVLTVIPA---DRLAVH-----C-HDTYG 227 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~~~~~~~~~~~~~~~---~~l~~H-----~-Hn~~g 227 (327)
.+.+.+.+.++.+.+.|+..|.|-|..+ ++++++..+.++..++...+ ..|-.- . .+..-
T Consensus 81 g~~~~~~~~v~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~ 160 (243)
T cd00377 81 GNALNVARTVRELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLD 160 (243)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHH
Confidence 3667888999999999999999977653 56888888888888887653 333322 1 13444
Q ss_pred cHHHHHHHHHHhcCceeee
Q psy12516 228 QALANILTAMEFGISVFDS 246 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd~ 246 (327)
-++.-+.++.++|||.+-.
T Consensus 161 eai~Ra~ay~~AGAD~v~v 179 (243)
T cd00377 161 EAIERAKAYAEAGADGIFV 179 (243)
T ss_pred HHHHHHHHHHHcCCCEEEe
Confidence 5788888999999987653
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=88.50 E-value=19 Score=32.67 Aligned_cols=139 Identities=17% Similarity=0.170 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCCc-------cCHHHHHH
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIGV-------GTPGTMRL 204 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G~-------~~P~~~~~ 204 (327)
+.++.++++++++++.|+.+. +..........-.+++.+.++.+.+- +-+.+ ..-|+.-. .+|++..+
T Consensus 120 ~~~~~l~~l~~~a~~~gi~l~--lEn~~~~~~~~~~t~~~~~~li~~v~--~~~~~g~~lD~~h~~~~g~~~~~~~~~~~ 195 (279)
T cd00019 120 RVIEALNELIDKAETKGVVIA--LETMAGQGNEIGSSFEELKEIIDLIK--EKPRVGVCIDTCHIFAAGYDISTVEGFEK 195 (279)
T ss_pred HHHHHHHHHHHhccCCCCEEE--EeCCCCCCCCCCCCHHHHHHHHHhcC--CCCCeEEEEEhhhHHhccCCCCCHHHHHH
Confidence 346778888888889998764 44422111001245566666665553 02222 23344332 13455777
Q ss_pred HHHHHHHhcCC-CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC-CCCC
Q psy12516 205 MLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGI-ETGA 282 (327)
Q Consensus 205 ~~~~~~~~~~~-~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~-~~~~ 282 (327)
.+..+.+.++. -...+|.||..+... + . +.+...+| .|..+..+++..|++.|| +..+
T Consensus 196 ~l~~~~~~i~~~~i~~vHikD~~~~~~---------~---------~-~~~~~~~G-~G~id~~~~l~~L~~~~y~~g~~ 255 (279)
T cd00019 196 VLEEFDKVIGLEYLKAIHLNDSKGELG---------S---------G-KDRHEPIG-EGDIDGEELFKELKKDPYQNIPL 255 (279)
T ss_pred HHHHHHHHhChhheeEEEEEcCCCccc---------C---------C-CccccCCC-CCCcCCHHHHHHHHhCcccCCCE
Confidence 77777766532 247899999763210 0 0 00122233 688999999999999888 5443
Q ss_pred C---------hhhHHHHHHHHH
Q psy12516 283 D---------LTSLLRTGHYIC 295 (327)
Q Consensus 283 d---------~~~l~~~~~~~~ 295 (327)
- ...+.+..++++
T Consensus 256 ~lE~~~~~~~~~~~~~~~~~~~ 277 (279)
T cd00019 256 ILETPSENRDAAKIKKEIKLLR 277 (279)
T ss_pred EEeCCCCCccchhHHHHHHHHh
Confidence 2 335555555554
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=88.46 E-value=7.4 Score=35.90 Aligned_cols=101 Identities=15% Similarity=0.059 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCC-ccCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIG-VGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G-~~~P~~~~~~~~~~~~~~~ 214 (327)
.++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+...| .+....- .+....+..++..+.++.+
T Consensus 5 ~~~~~l~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~ 74 (284)
T PRK12737 5 STKNMLKKAQAEGYAVPA-----FN-----IHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN 74 (284)
T ss_pred cHHHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC
Confidence 366788899999987642 32 2577899999999999987744 4433221 2334556666777776664
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeecccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIAG 250 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~G 250 (327)
+|+.+| =|-|........|+++|.+- +|+|-..
T Consensus 75 -VPValH--LDH~~~~e~i~~ai~~GftSVMiDgS~lp 109 (284)
T PRK12737 75 -IPLALH--LDHHEDLDDIKKKVRAGIRSVMIDGSHLS 109 (284)
T ss_pred -CCEEEE--CCCCCCHHHHHHHHHcCCCeEEecCCCCC
Confidence 577765 46676788999999999874 5877653
|
|
| >PF02548 Pantoate_transf: Ketopantoate hydroxymethyltransferase; InterPro: IPR003700 The panB gene from Escherichia coli encodes the first enzyme of the pantothenate biosynthesis pathway, ketopantoate hydroxymethyltransferase (KPHMT) 2 | Back alignment and domain information |
|---|
Probab=88.42 E-value=19 Score=32.75 Aligned_cols=148 Identities=22% Similarity=0.278 Sum_probs=75.1
Q ss_pred HHHHHHHcCcCEEEecCCccccC----------HHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 3 VASALYKMGCYEISLGDTIGVGT----------PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~----------p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
.|+.+.++|+|.|.+.||.|+-. .+++....+.+++..|..- -..|
T Consensus 28 ~A~~~d~agvD~iLVGDSlgmv~~G~~sT~~vtld~mi~h~~aV~Rga~~~~------------------------vv~D 83 (261)
T PF02548_consen 28 SARIADEAGVDIILVGDSLGMVVLGYDSTLPVTLDEMIYHTKAVRRGAPNAF------------------------VVAD 83 (261)
T ss_dssp HHHHHHHTT-SEEEE-TTHHHHTT--SSSTT--HHHHHHHHHHHHHH-TSSE------------------------EEEE
T ss_pred HHHHHHHcCCCEEEeCCcHHHheeCCCCCcCcCHHHHHHHHHHHHhcCCCce------------------------EEec
Confidence 46778899999999999995432 4555556677777766311 1112
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
+. ++ +-+.+.|+-+....+...+.|.|.+.+-... ...+.++...+.|+.|
T Consensus 84 --mP-f~--------sy~~s~e~av~nA~rl~ke~GadaVKlEGg~------------------~~~~~i~~l~~~GIPV 134 (261)
T PF02548_consen 84 --MP-FG--------SYQASPEQAVRNAGRLMKEAGADAVKLEGGA------------------EIAETIKALVDAGIPV 134 (261)
T ss_dssp -----TT--------SSTSSHHHHHHHHHHHHHTTT-SEEEEEBSG------------------GGHHHHHHHHHTT--E
T ss_pred --CC-cc--------cccCCHHHHHHHHHHHHHhcCCCEEEeccch------------------hHHHHHHHHHHCCCcE
Confidence 11 11 1123445444444444444555555543221 1234455556667777
Q ss_pred EEEEeee------cc-CCCCCCC--ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHH
Q psy12516 153 RGYISCV------VG-CPYEGAV--PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLED 208 (327)
Q Consensus 153 ~~~l~~~------~g-~~~~~r~--~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~ 208 (327)
.+.+... +| .--.+|. +...+.+-++.+.++|+-.|.|- ..|.++.+.+..
T Consensus 135 ~gHiGLtPQ~~~~~GGyr~qGk~~~~a~~l~~~A~ale~AGaf~ivlE-----~vp~~la~~It~ 194 (261)
T PF02548_consen 135 MGHIGLTPQSVHQLGGYRVQGKTAEEAEKLLEDAKALEEAGAFAIVLE-----CVPAELAKAITE 194 (261)
T ss_dssp EEEEES-GGGHHHHTSS--CSTSHHHHHHHHHHHHHHHHHT-SEEEEE-----SBBHHHHHHHHH
T ss_pred EEEecCchhheeccCCceEEecCHHHHHHHHHHHHHHHHcCccEEeee-----cCHHHHHHHHHH
Confidence 6665431 00 0001122 33456677777888888887763 457777766554
|
1.2.11 from EC. Fungal ketopantoate hydroxymethyltransferase is essential for the biosynthesis of coenzyme A, while the pathway intermediate 4'-phosphopantetheine is required for penicillin production [].; GO: 0003864 3-methyl-2-oxobutanoate hydroxymethyltransferase activity, 0015940 pantothenate biosynthetic process; PDB: 3VAV_G 1M3U_A 3EZ4_J 1O68_C 1O66_A 1OY0_D. |
| >TIGR02990 ectoine_eutA ectoine utilization protein EutA | Back alignment and domain information |
|---|
Probab=88.34 E-value=15 Score=33.04 Aligned_cols=89 Identities=13% Similarity=0.182 Sum_probs=61.0
Q ss_pred cCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCC---CCCCChHHHHHHHHHHHHc
Q psy12516 107 CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY---EGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 107 ~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~---~~r~~~e~l~~~~~~~~~~ 183 (327)
.|++++.+..+=.+ +-.....++..+.|++|..... ++.++ ..+.+++.+.+.++.+...
T Consensus 118 lg~~RIalvTPY~~---------------~v~~~~~~~l~~~G~eV~~~~~--~~~~~~~~ia~i~p~~i~~~~~~~~~~ 180 (239)
T TIGR02990 118 LGVRRISLLTPYTP---------------ETSRPMAQYFAVRGFEIVNFTC--LGLTDDREMARISPDCIVEAALAAFDP 180 (239)
T ss_pred cCCCEEEEECCCcH---------------HHHHHHHHHHHhCCcEEeeeec--cCCCCCceeeecCHHHHHHHHHHhcCC
Confidence 47777776655322 2344556778889999864323 44432 3478999999999988888
Q ss_pred CcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeE
Q psy12516 184 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL 218 (327)
Q Consensus 184 g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l 218 (327)
++|.|.++.|. ....+++..+-+.++. |+
T Consensus 181 ~aDAifisCTn-----Lrt~~vi~~lE~~lGk-PV 209 (239)
T TIGR02990 181 DADALFLSCTA-----LRAATCAQRIEQAIGK-PV 209 (239)
T ss_pred CCCEEEEeCCC-----chhHHHHHHHHHHHCC-CE
Confidence 99999998763 4556677777776653 44
|
Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens. |
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=88.20 E-value=6.6 Score=35.63 Aligned_cols=77 Identities=14% Similarity=0.183 Sum_probs=52.8
Q ss_pred CCCC-CChHHHHHHHHHHHHcCcCEEEecC-CC--C--ccCHH-H---HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHH
Q psy12516 164 YEGA-VPPHNVTRVATALYKMGCYEISLGD-TI--G--VGTPG-T---MRLMLEDVLTVIPADRLAVHCHDTYGQALANI 233 (327)
Q Consensus 164 ~~~r-~~~e~l~~~~~~~~~~g~~~i~l~D-t~--G--~~~P~-~---~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~ 233 (327)
+.++ .+++...+.+++..+.|++.|-+.- ++ | ..+|+ + +...++.+++.+ +++|.+|+++.. ..
T Consensus 15 dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT~~~~-----vi 88 (257)
T TIGR01496 15 DGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDTYRAE-----VA 88 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCCHH-----HH
Confidence 3444 4789999999999999999998841 11 1 12333 3 555556666544 478999999864 34
Q ss_pred HHHHHhcCceeee
Q psy12516 234 LTAMEFGISVFDS 246 (327)
Q Consensus 234 l~a~~~G~~~vd~ 246 (327)
.+|+++|++.|..
T Consensus 89 ~~al~~G~~iINs 101 (257)
T TIGR01496 89 RAALEAGADIIND 101 (257)
T ss_pred HHHHHcCCCEEEE
Confidence 5677889998863
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=88.09 E-value=7 Score=36.84 Aligned_cols=44 Identities=27% Similarity=0.296 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC-CCChHHHHHHHHHHHHcCcCEEEecC
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEG-AVPPHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~-r~~~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
+..+.++.+.+++.|.++.+ |.+ +++. ++++ +..+|+|.+.+..
T Consensus 199 ltAV~~~a~~a~~~gvpiIA---------DGGi~~sG----DI~K-AlaaGAd~VMlGs 243 (346)
T PRK05096 199 LSAVIECADAAHGLGGQIVS---------DGGCTVPG----DVAK-AFGGGADFVMLGG 243 (346)
T ss_pred HHHHHHHHHHHHHcCCCEEe---------cCCccccc----HHHH-HHHcCCCEEEeCh
Confidence 66778888899999988742 333 4443 3333 3348999987643
|
|
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=88.09 E-value=25 Score=33.52 Aligned_cols=115 Identities=17% Similarity=0.133 Sum_probs=77.0
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----C------CCChHHHHHHHHHHH-HcCcC--EEEecCCCC
Q psy12516 129 CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----G------AVPPHNVTRVATALY-KMGCY--EISLGDTIG 195 (327)
Q Consensus 129 ~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----~------r~~~e~l~~~~~~~~-~~g~~--~i~l~Dt~G 195 (327)
.+.+|+++..++++++|+..|+.|++-|...-|.++. . .++|++..++++..- ..|+| .+.+.-..|
T Consensus 146 lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG 225 (357)
T TIGR01520 146 EPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHG 225 (357)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccC
Confidence 4568899999999999999999999888765444442 1 368888877776552 33777 455656777
Q ss_pred ccC---HHHHHHHHHHH----HHhcCCCe------EEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 196 VGT---PGTMRLMLEDV----LTVIPADR------LAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 196 ~~~---P~~~~~~~~~~----~~~~~~~~------l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.-. |.=-.++++.+ ++.. ++| |.+|. --|..-.....|++.|+..|..
T Consensus 226 ~Yk~~~p~Ld~d~L~~I~~~~~~~~-~vP~~~~~pLVLHG--gSGi~~e~i~kai~~GI~KINi 286 (357)
T TIGR01520 226 VYKPGNVKLTPDILADGQEYVSEKL-GLPAAKPLFFVFHG--GSGSTKQEIKEALSYGVVKMNI 286 (357)
T ss_pred CcCCCCCccCHHHHHHHHHHHHHhc-CCCcCCCCcEEEeC--CCCCCHHHHHHHHHCCCeEEEe
Confidence 543 32223344444 3333 233 66655 4566778889999999987654
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.08 E-value=6.1 Score=39.49 Aligned_cols=70 Identities=11% Similarity=0.098 Sum_probs=51.8
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
.+.++.+.++|+|.|.+--+.| -++ ...+.++.+++.+|+++|.. -.......+..++++|+|.|.+++.
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G-~s~-~~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g 312 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQG-NSI-YQIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMG 312 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCC-Cch-HHHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCc
Confidence 7788889999999998744333 223 34678999999998888877 1122346788899999999987543
|
|
| >PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=88.03 E-value=18 Score=35.76 Aligned_cols=50 Identities=18% Similarity=0.287 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE
Q psy12516 135 LERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 135 i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+.++.+++. |+.+...+. +|.|.+ +.+.+.+.++.+.+.+.+.+.
T Consensus 289 ~e~~~~~i~~lr~~~pgi~i~~d~I--vG~PgE---T~ed~~~ti~~l~~l~~~~v~ 340 (459)
T PRK14338 289 VARYRELIARIREAIPDVSLTTDII--VGHPGE---TEEQFQRTYDLLEEIRFDKVH 340 (459)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHHcCCCEeE
Confidence 44566677777776 666555444 555654 677888888888888887654
|
|
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=88.02 E-value=22 Score=32.79 Aligned_cols=109 Identities=14% Similarity=0.146 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC-EEEecCCCCccCH-HHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY-EISLGDTIGVGTP-GTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G~~~P-~~~~~~~~~~~~~~~ 214 (327)
.++++++.|++.|+-|-+ |. -++.+.+..+.+.+.+.+.. .|.+....-...| +.+..++....+...
T Consensus 5 ~~~~~l~~A~~~~yaV~A-----fn-----~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~~~~~~~~~~~~a~~~~ 74 (281)
T PRK06806 5 QMKELLKKANQENYGVGA-----FS-----VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSPLHLIGPLMVAAAKQAK 74 (281)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCChHHHHHHHHHHHHHCC
Confidence 467788999999998753 32 26788999999999998876 4445443322233 345556665555553
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHH
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVY 271 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~ 271 (327)
+|+.+|. |.|........|+++|++.|.. |..+.+.++.+.
T Consensus 75 -vpv~lHl--DH~~~~e~i~~Al~~G~tsVm~-------------d~s~~~~~eni~ 115 (281)
T PRK06806 75 -VPVAVHF--DHGMTFEKIKEALEIGFTSVMF-------------DGSHLPLEENIQ 115 (281)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCEEEE-------------cCCCCCHHHHHH
Confidence 5777655 5577788899999999998754 455666666654
|
|
| >COG1242 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.00 E-value=11 Score=34.63 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHhhcCCCeeEEEecCccc-hHHHHHHHHH------HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHH
Q psy12516 26 PGTMRLMLEDVLTVIPADRLAVHCHDTYG-QALANILTAM------EFGISVFDSSIAGLGGCPYARGASGNVATEDLVY 98 (327)
Q Consensus 26 p~~~~~~~~~~~~~~~~~~~~~H~h~~~g-~~~~~~~~a~------~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~ 98 (327)
+.++++....+++.++....-.-|.+... -|-.+.+..+ +.|+--+. ++ --| -.-++++++
T Consensus 66 ~~Q~~~q~~~~~kK~~~~kyiaYFQ~~TNTyApvevLre~ye~aL~~~~VVGLs--Ig---TRP-------DClpd~Vld 133 (312)
T COG1242 66 AEQFKEQAERMHKKWKRGKYIAYFQAYTNTYAPVEVLREMYEQALSEAGVVGLS--IG---TRP-------DCLPDDVLD 133 (312)
T ss_pred HHHHHHHHHHHHHhhcCCcEEEEEeccccccCcHHHHHHHHHHHhCcCCeeEEe--ec---CCC-------CCCcHHHHH
Confidence 44577778888888876444443333222 1334444443 23433333 22 111 123677777
Q ss_pred Hhhhh------hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHH
Q psy12516 99 MLEGK------SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHN 172 (327)
Q Consensus 99 ~l~~~------~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~ 172 (327)
.|... .++.|+...+ .....++|-+-+ +.-..+.+..+++.|++|+..+. +|-|-+ +.++
T Consensus 134 lL~e~~~r~~vWvELGLQT~h-----~~Tlk~iNRgHd----~~~y~dav~r~rkrgIkvc~HiI--~GLPgE---~~~~ 199 (312)
T COG1242 134 LLAEYNKRYEVWVELGLQTAH-----DKTLKRINRGHD----FACYVDAVKRLRKRGIKVCTHLI--NGLPGE---TRDE 199 (312)
T ss_pred HHHHHhhheEEEEEeccchhh-----HHHHHHHhcccc----hHHHHHHHHHHHHcCCeEEEEEe--eCCCCC---CHHH
Confidence 77653 3334444332 122222332222 45577888999999999987766 455643 5678
Q ss_pred HHHHHHHHHHcCcCEEEe
Q psy12516 173 VTRVATALYKMGCYEISL 190 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l 190 (327)
..+.++.+.+.|++.|-|
T Consensus 200 mleTak~v~~~~v~GIKl 217 (312)
T COG1242 200 MLETAKIVAELGVDGIKL 217 (312)
T ss_pred HHHHHHHHHhcCCceEEE
Confidence 888899999999986543
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=87.94 E-value=21 Score=32.60 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=21.1
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCC
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTI 194 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~ 194 (327)
.+.+++.++++.+.+.|+|.|.+..+.
T Consensus 173 ~~~~~~~~~a~~l~~~Gad~i~~~~~~ 199 (289)
T cd02810 173 FDLEDIVELAKAAERAGADGLTAINTI 199 (289)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 456678888888889999988876553
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial | Back alignment and domain information |
|---|
Probab=87.89 E-value=17 Score=34.03 Aligned_cols=76 Identities=17% Similarity=0.257 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc-CcCEEEecCCCCccCHHHHHHHHHHHHHh-c
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM-GCYEISLGDTIGVGTPGTMRLMLEDVLTV-I 213 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~ 213 (327)
+.+..+++.+.+.|+... .+. -|-|. -...+.++++.+.+. |...+.+ .|.|.+.++. +..+++. +
T Consensus 46 eei~~~i~~~~~~gv~~V-~lt--GGEPl----l~~~l~~li~~i~~~~gi~~v~i-tTNG~ll~~~----~~~L~~~gl 113 (334)
T TIGR02666 46 EEIERLVRAFVGLGVRKV-RLT--GGEPL----LRKDLVELVARLAALPGIEDIAL-TTNGLLLARH----AKDLKEAGL 113 (334)
T ss_pred HHHHHHHHHHHHCCCCEE-EEE--Ccccc----ccCCHHHHHHHHHhcCCCCeEEE-EeCchhHHHH----HHHHHHcCC
Confidence 334556666666675421 121 13232 112355666665553 4544554 5677666542 3344432 2
Q ss_pred CCCeEEEeec
Q psy12516 214 PADRLAVHCH 223 (327)
Q Consensus 214 ~~~~l~~H~H 223 (327)
..+.|+++..
T Consensus 114 ~~v~ISld~~ 123 (334)
T TIGR02666 114 KRVNVSLDSL 123 (334)
T ss_pred CeEEEecccC
Confidence 2345555543
|
The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. |
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=87.79 E-value=17 Score=33.50 Aligned_cols=98 Identities=12% Similarity=0.123 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCCccCHHHHHHHHHHHHHhcCCCe
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIGVGTPGTMRLMLEDVLTVIPADR 217 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~ 217 (327)
++++..|++.++-|-+ |. -++.+.+..+.+.+.+.+...| .+....-...|..+..++..+.+... +|
T Consensus 2 ~~~L~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~-vP 70 (283)
T PRK08185 2 KELLKVAKEHQFAVGA-----FN-----VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP-VP 70 (283)
T ss_pred HHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC-CC
Confidence 4567889998887742 31 2678899999999999988754 44332222234556666766666654 57
Q ss_pred EEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 218 LAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 218 l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+.+| =|-|........|+++|.+- +|.|-.
T Consensus 71 V~lH--LDHg~~~e~i~~ai~~Gf~SVM~D~S~l 102 (283)
T PRK08185 71 FVIH--LDHGATIEDVMRAIRCGFTSVMIDGSLL 102 (283)
T ss_pred EEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 6664 56677788899999999764 565433
|
|
| >cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases | Back alignment and domain information |
|---|
Probab=87.63 E-value=23 Score=32.57 Aligned_cols=142 Identities=15% Similarity=0.170 Sum_probs=75.5
Q ss_pred HHHHHHHHcCcCEEEecCCccc-----cCHHHHHHHH-HHHHhhc-----CCCeeEEEecCccchHHHHHHHHH-HcCCc
Q psy12516 2 KVASALYKMGCYEISLGDTIGV-----GTPGTMRLML-EDVLTVI-----PADRLAVHCHDTYGQALANILTAM-EFGIS 69 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~-----~~p~~~~~~~-~~~~~~~-----~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~ 69 (327)
++++.+.++|++.|.+.|..+. .+|...++++ ..+++.. ++.++.+|..-+. ...+..+ +.|++
T Consensus 148 ~~~~~~~eaG~d~i~i~dp~~~~~~~~is~~~~~e~~~p~~k~i~~~i~~~~~~~~lH~cg~~----~~~~~~l~~~~~d 223 (306)
T cd00465 148 EYAKTLIEAGAKALQIHEPAFSQINSFLGPKMFKKFALPAYKKVAEYKAAGEVPIVHHSCYDA----ADLLEEMIQLGVD 223 (306)
T ss_pred HHHHHHHHhCCCEEEEecccccccCCCCCHHHHHHHHHHHHHHHHHHHhhcCCceEEEECCCH----HHHHHHHHHhCcc
Confidence 5677888999999999997643 4787776653 3333322 2346666666443 3345555 67887
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhh-hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLE-GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~-~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.+..-..- + +..++...+. +..+.-|++... +..+.++..+.++++++....
T Consensus 224 ~~~~d~~~-~------------d~~~~~~~~~~~~~i~Ggv~~~~-------------~~~~~e~i~~~v~~~l~~~~~- 276 (306)
T cd00465 224 VISFDMTV-N------------EPKEAIEKVGEKKTLVGGVDPGY-------------LPATDEECIAKVEELVERLGP- 276 (306)
T ss_pred eEeccccc-C------------CHHHHHHHhCCCEEEECCCCccc-------------cCCCHHHHHHHHHHHHHHhCC-
Confidence 76522211 0 2223333222 123333444331 123445667777777776533
Q ss_pred CCeEEEEEeeeccCCCCCCCCh--HHHHHHHHHH
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPP--HNVTRVATAL 180 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~--e~l~~~~~~~ 180 (327)
|.-+ ..+|......++ +.+..+.+.+
T Consensus 277 ~~il------~~~cgi~~~~~~~~enl~a~v~a~ 304 (306)
T cd00465 277 HYII------NPDCGLGPDSDYKPEHLRAVVQLV 304 (306)
T ss_pred CeEE------eCCCCCCCCCCCcHHHHHHHHHHh
Confidence 3211 134444434455 7777666654
|
Despite their sequence similarities, members of this family have clearly different functions. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane, and methionine synthases transfer a methyl group from a folate cofactor to L-homocysteine in a reaction requiring zinc. |
| >PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=87.61 E-value=18 Score=35.47 Aligned_cols=88 Identities=15% Similarity=0.137 Sum_probs=52.4
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHHHHH-HhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCh
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEMFSK-RNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPP 170 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~-~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~ 170 (327)
.++++..|.+.+ .|+..+++ +.+.|+...+ .+-+.+ .+.+.+.++.+++.|..+......++|.|.+ +.
T Consensus 233 ~~ell~~l~~~~--~g~~~l~igvQSgs~~vLk~m~R~~~----~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgE---t~ 303 (440)
T PRK14334 233 TDDVIAAMAETP--AVCEYIHLPVQSGSDRVLRRMAREYR----REKYLERIAEIREALPDVVLSTDIIVGFPGE---TE 303 (440)
T ss_pred CHHHHHHHHhcC--cCCCeEEeccccCCHHHHHHhCCCCC----HHHHHHHHHHHHHhCCCcEEEEeEEEECCCC---CH
Confidence 355666665421 34555555 3344444332 222233 3456677888888877654445556676754 67
Q ss_pred HHHHHHHHHHHHcCcCEEE
Q psy12516 171 HNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~ 189 (327)
+.+.+..+.+.+.+++.+.
T Consensus 304 ed~~~tl~~i~~l~~~~i~ 322 (440)
T PRK14334 304 EDFQETLSLYDEVGYDSAY 322 (440)
T ss_pred HHHHHHHHHHHhcCCCEee
Confidence 7888888888888887554
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=87.56 E-value=9.1 Score=36.29 Aligned_cols=100 Identities=15% Similarity=0.188 Sum_probs=71.1
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCC-ccCHHHHHHHHHHHHHhcCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIG-VGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G-~~~P~~~~~~~~~~~~~~~~ 215 (327)
++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+...| .+.-..- .+....+..++..+.+..+.
T Consensus 4 ~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~ 73 (347)
T TIGR01521 4 MRQLLDHAAEFGYGVPA-----FN-----VNNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH 73 (347)
T ss_pred HHHHHHHHHHcCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC
Confidence 56778899999997742 32 2578899999999999987754 3333221 23335567777777776655
Q ss_pred CeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 216 DRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+| =|-|........|+++|.+- +|+|-.
T Consensus 74 VPValH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l 107 (347)
T TIGR01521 74 IPVVMH--QDHGNSPATCQRAIQLGFTSVMMDGSLR 107 (347)
T ss_pred CcEEEE--CCCCCCHHHHHHHHHcCCCEEeecCcCC
Confidence 677765 46677788999999999875 699853
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.54 E-value=13 Score=34.63 Aligned_cols=100 Identities=15% Similarity=0.048 Sum_probs=69.5
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE-ecCCC-CccCHHHHHHHHHHHHHhcCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS-LGDTI-GVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~-l~Dt~-G~~~P~~~~~~~~~~~~~~~~ 215 (327)
+++++..|++.++-|-+ |. -++.+.+..+.+.+.+.+...|. +.... ..+.+..+..++..+.+..+.
T Consensus 5 ~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~ 74 (307)
T PRK05835 5 GNEILLKAHKEGYGVGA-----FN-----FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH 74 (307)
T ss_pred HHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC
Confidence 56778899999987642 31 26789999999999999877543 33322 123345566667767666654
Q ss_pred CeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 216 DRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+| =|-|.....+..|+++|.+- +|+|-.
T Consensus 75 VPValH--LDHg~~~e~i~~ai~~GftSVM~DgS~l 108 (307)
T PRK05835 75 IPVALH--LDHGTTFESCEKAVKAGFTSVMIDASHH 108 (307)
T ss_pred CeEEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCC
Confidence 677765 46677788899999999864 587764
|
|
| >TIGR01093 aroD 3-dehydroquinate dehydratase, type I | Back alignment and domain information |
|---|
Probab=87.41 E-value=20 Score=31.73 Aligned_cols=120 Identities=15% Similarity=0.168 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh--cC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV--IP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~--~~ 214 (327)
...++++.+++.+.++-+ ++.. +..--+.+.+.+..+++.+.|+|.+.++-+. -++.++.+++....+. .+
T Consensus 106 ~~~~l~~~~~~~~~kvI~--S~H~---f~~tp~~~~l~~~~~~~~~~gaDivKia~~a--~~~~D~~~ll~~~~~~~~~~ 178 (228)
T TIGR01093 106 AVKELINIAKKGGTKIIM--SYHD---FQKTPSWEEIVERLEKALSYGADIVKIAVMA--NSKEDVLTLLEITNKVDEHA 178 (228)
T ss_pred HHHHHHHHHHHCCCEEEE--eccC---CCCCCCHHHHHHHHHHHHHhCCCEEEEEecc--CCHHHHHHHHHHHHHHHhcC
Confidence 356677778888887653 3321 1212344678899999999999998887663 3466777777655432 23
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHH
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYM 272 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~ 272 (327)
..|+..-.=-..|. ..-+.+-..|--..=+++ |. | .+.|+.+++++...
T Consensus 179 ~~p~i~~~MG~~G~--~SRil~~~~gs~~t~~~~---~~-~---sApGQ~~~~~l~~~ 227 (228)
T TIGR01093 179 DVPLITMSMGDRGK--ISRVLGAVFGSVLTFGSL---GK-A---SAPGQISVDDLREL 227 (228)
T ss_pred CCCEEEEeCCCCCh--hHhhccccccccceeccC---CC-C---CCCCCcCHHHHHhh
Confidence 44555433223332 222333344443322332 33 2 25679999987653
|
Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.36 E-value=10 Score=35.69 Aligned_cols=71 Identities=14% Similarity=0.107 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
...+.++.+.+.|++.|.+.=+.| .+....++++.+++..|++++.. .|- .....+..++++|+|.|.+++
T Consensus 94 ~~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~ 164 (325)
T cd00381 94 DDKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGI 164 (325)
T ss_pred hHHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECC
Confidence 345678888899999887744444 34677889999999888666665 222 334667888899999998754
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=87.21 E-value=6.5 Score=37.41 Aligned_cols=212 Identities=16% Similarity=0.155 Sum_probs=110.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
+.++.+.++|+|.|.+ |++=.-+. .+.+.++.+++.+|++++-.--.-+... +..-+++|++.|-++++ .
T Consensus 111 er~~~L~~agvD~ivI-D~a~g~s~-~~~~~ik~ik~~~~~~~viaGNV~T~e~----a~~L~~aGad~vkVGiG---p- 180 (352)
T PF00478_consen 111 ERAEALVEAGVDVIVI-DSAHGHSE-HVIDMIKKIKKKFPDVPVIAGNVVTYEG----AKDLIDAGADAVKVGIG---P- 180 (352)
T ss_dssp HHHHHHHHTT-SEEEE-E-SSTTSH-HHHHHHHHHHHHSTTSEEEEEEE-SHHH----HHHHHHTT-SEEEESSS---S-
T ss_pred HHHHHHHHcCCCEEEc-cccCccHH-HHHHHHHHHHHhCCCceEEecccCCHHH----HHHHHHcCCCEEEEecc---C-
Confidence 5788899999998855 55532333 3446788999999987776655555432 23345899999887654 2
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
|-.++-..+ +|+-. +| +..+.++.+.+++.++++.+
T Consensus 181 -------GsiCtTr~v---------~GvG~--------------------PQ-~tAv~~~a~~a~~~~v~iIA------- 216 (352)
T PF00478_consen 181 -------GSICTTREV---------TGVGV--------------------PQ-LTAVYECAEAARDYGVPIIA------- 216 (352)
T ss_dssp -------STTBHHHHH---------HSBSC--------------------TH-HHHHHHHHHHHHCTTSEEEE-------
T ss_pred -------Ccccccccc---------cccCC--------------------cH-HHHHHHHHHHhhhccCceee-------
Confidence 334443221 22221 12 45567778888888988752
Q ss_pred CCCCC-CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEE----EeecCCcCcHHHHHHHH
Q psy12516 162 CPYEG-AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA----VHCHDTYGQALANILTA 236 (327)
Q Consensus 162 ~~~~~-r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~----~H~Hn~~g~a~an~l~a 236 (327)
|.+ +++. ++++ +..+|+|.+.+.-..-. -. +.|. ++. .+.+.-+||+...++..
T Consensus 217 --DGGi~~sG----Di~K-Ala~GAd~VMlG~llAg------------t~-EsPG-~~~~~~g~~~K~yrGMgS~~A~~~ 275 (352)
T PF00478_consen 217 --DGGIRTSG----DIVK-ALAAGADAVMLGSLLAG------------TD-ESPG-EVIYIDGKRYKKYRGMGSLGAMKK 275 (352)
T ss_dssp --ESS-SSHH----HHHH-HHHTT-SEEEESTTTTT------------BT-TSSS-EEEEETTEEEEEEEETTSHHHHHH
T ss_pred --cCCcCccc----ceee-eeeecccceeechhhcc------------Cc-CCCC-ceEEECCeEEEEecccccHHHHhh
Confidence 233 3333 3333 44589999976543221 11 2344 222 24455579996555544
Q ss_pred HHhcCceeeeccccCCCCCCCCCC----CCCccHHHHHHHH----Hh-CCCCCCCChhhHHHHH
Q psy12516 237 MEFGISVFDSSIAGLGGCPYARGA----SGNVATEDLVYML----EG-MGIETGADLTSLLRTG 291 (327)
Q Consensus 237 ~~~G~~~vd~s~~G~G~~p~~~g~----~Gn~~~e~~~~~l----~~-~g~~~~~d~~~l~~~~ 291 (327)
-..+.++....-. .+ ..+.|. .---++++++..| +. ++|--.-++..|.+-+
T Consensus 276 ~~~~~~ry~~~~~--~~-~v~eGve~~vp~~G~v~~~l~~l~gglrs~m~y~Ga~~i~el~~~~ 336 (352)
T PF00478_consen 276 RRGSGDRYFQAED--KK-FVPEGVEGLVPYKGSVSDILPQLVGGLRSGMGYVGARSIKELRKKA 336 (352)
T ss_dssp HSTTGCTCTSSTS--ST-SSSSBEEEEEE-BB-HHHHHHHHHHHHHHHHHHTTSSBHHHHHHHH
T ss_pred ccccchhcccccc--cc-ccccceeecCCCCCCHHHHHHHHHHHHHHHHHhcCcccHHHHHhCC
Confidence 2234444311100 00 001111 1234566666544 33 4443345677776655
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=87.21 E-value=23 Score=32.19 Aligned_cols=90 Identities=12% Similarity=0.169 Sum_probs=53.9
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+...+.|+|.+.+.+- . ++...++++.+++.|+.... +.+| .++.+.+..+.+
T Consensus 111 ~~~~~aGvdGviipDL------------p----~ee~~~~~~~~~~~gl~~I~-----lvap---~t~~eri~~i~~--- 163 (258)
T PRK13111 111 ADAAEAGVDGLIIPDL------------P----PEEAEELRAAAKKHGLDLIF-----LVAP---TTTDERLKKIAS--- 163 (258)
T ss_pred HHHHHcCCcEEEECCC------------C----HHHHHHHHHHHHHcCCcEEE-----EeCC---CCCHHHHHHHHH---
Confidence 3455677777665421 1 45678889999999998642 1122 234444444433
Q ss_pred HcCcCEEEe---cCCCCc--cCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 182 KMGCYEISL---GDTIGV--GTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 182 ~~g~~~i~l---~Dt~G~--~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
....-||+ .-++|. ..|..+.++++.+|+.. ++|+-+
T Consensus 164 -~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~-~~pv~v 205 (258)
T PRK13111 164 -HASGFVYYVSRAGVTGARSADAADLAELVARLKAHT-DLPVAV 205 (258)
T ss_pred -hCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC-CCcEEE
Confidence 33344444 344554 55778899999999865 345554
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=87.20 E-value=25 Score=32.60 Aligned_cols=197 Identities=15% Similarity=0.138 Sum_probs=102.2
Q ss_pred ecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHH---HH-HcCCcEEEecccCCCCCCCCCCccCCCc
Q psy12516 17 LGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT---AM-EFGISVFDSSIAGLGGCPYARGASGNVA 92 (327)
Q Consensus 17 ~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~---a~-~aG~~~id~~~~glg~~p~~~~~~gn~~ 92 (327)
++|. |..+..++...++.+.+..+ +|+..-.=+-+| ...|+.. .+ ++|+.-|..-=.-.-. +.|+..
T Consensus 55 ~PD~-g~l~~~e~~~~~~~I~~~~~-iPviaD~d~GyG-~~~~v~r~V~~~~~aGaagi~IEDq~~pK------~cg~~~ 125 (292)
T PRK11320 55 LPDL-GITTLDDVLIDVRRITDACD-LPLLVDIDTGFG-GAFNIARTVKSMIKAGAAAVHIEDQVGAK------RCGHRP 125 (292)
T ss_pred CCCC-CCCCHHHHHHHHHHHHhccC-CCEEEECCCCCC-CHHHHHHHHHHHHHcCCeEEEEecCCCcc------ccCCCC
Confidence 4443 57777788888888877765 788888877777 5566532 22 5777655422111000 112111
Q ss_pred HHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC-CCCChH
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE-GAVPPH 171 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~-~r~~~e 171 (327)
...+ .+.++..++++.+.+..+ +..+.++-. .|. .....+
T Consensus 126 ~~~l--------------------------------v~~ee~~~kI~Aa~~a~~--~~d~~IiAR-----TDa~~~~g~d 166 (292)
T PRK11320 126 NKEI--------------------------------VSQEEMVDRIKAAVDART--DPDFVIMAR-----TDALAVEGLD 166 (292)
T ss_pred CCcc--------------------------------cCHHHHHHHHHHHHHhcc--CCCeEEEEe-----cCcccccCHH
Confidence 0000 012223444443333322 333222111 111 123456
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc-HHHHHHHHHHhcCceeeecccc
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ-ALANILTAMEFGISVFDSSIAG 250 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~-a~an~l~a~~~G~~~vd~s~~G 250 (327)
+.++-++...++|+|.|.+. |.-+++++.++.+.+ + .|+-+-.-. +|. ..-+.-..-+.|+++|-.....
T Consensus 167 eAI~Ra~aY~eAGAD~ifi~---~~~~~~~i~~~~~~~----~-~Pl~~n~~~-~~~~p~~s~~~L~~lGv~~v~~~~~~ 237 (292)
T PRK11320 167 AAIERAQAYVEAGADMIFPE---AMTELEMYRRFADAV----K-VPILANITE-FGATPLFTTEELASAGVAMVLYPLSA 237 (292)
T ss_pred HHHHHHHHHHHcCCCEEEec---CCCCHHHHHHHHHhc----C-CCEEEEecc-CCCCCCCCHHHHHHcCCcEEEEChHH
Confidence 77777888889999999874 456777777766654 3 345331111 111 1112334456798887654442
Q ss_pred CCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 251 LGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 251 ~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
+ ++-...+++.+..+++.|.
T Consensus 238 ~--------~aa~~a~~~~~~~l~~~g~ 257 (292)
T PRK11320 238 F--------RAMNKAAENVYEAIRRDGT 257 (292)
T ss_pred H--------HHHHHHHHHHHHHHHHcCC
Confidence 2 3445566666666666554
|
|
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=87.18 E-value=4 Score=35.97 Aligned_cols=70 Identities=16% Similarity=0.129 Sum_probs=56.0
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.+++...++++.+.+.|.+.|.+. +-+| ...+.++.+++.+|+..|+.-+=-+. ..+..|+++|++++=+
T Consensus 24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fivs 93 (212)
T PRK05718 24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVS 93 (212)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEEC
Confidence 578999999999999999999886 5556 45667899999999887887554443 6678899999998643
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=87.12 E-value=8 Score=37.10 Aligned_cols=90 Identities=17% Similarity=0.226 Sum_probs=60.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC-------CCccCHHHHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT-------IGVGTPGTMRLMLE 207 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt-------~G~~~P~~~~~~~~ 207 (327)
.+.+.+.++..++.+..+. . |.++....++++.+.+.|+|.|.+-.| .|...|..+.++++
T Consensus 118 p~l~~~ii~~vr~a~Vtvk----i--------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~ 185 (369)
T TIGR01304 118 PELLGERIAEVRDSGVITA----V--------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIG 185 (369)
T ss_pred hHHHHHHHHHHHhcceEEE----E--------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHH
Confidence 4556677788888774332 1 345567889999999999999998654 35567876655554
Q ss_pred HHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 208 DVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 208 ~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
. ++ +|+.. .+ -.....++.+++.|++.|.
T Consensus 186 ~----~~-IPVI~---G~-V~t~e~A~~~~~aGaDgV~ 214 (369)
T TIGR01304 186 E----LD-VPVIA---GG-VNDYTTALHLMRTGAAGVI 214 (369)
T ss_pred H----CC-CCEEE---eC-CCCHHHHHHHHHcCCCEEE
Confidence 3 33 46543 22 3345667888899999987
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=87.08 E-value=14 Score=34.22 Aligned_cols=100 Identities=15% Similarity=0.056 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE-ecCCCC-ccCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS-LGDTIG-VGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~-l~Dt~G-~~~P~~~~~~~~~~~~~~~ 214 (327)
..+++++.|++.|+-|-+ |. -++.+.+..+.+.+.+.+...|. +....- .+....+..++..+.++..
T Consensus 5 ~~k~iL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~ 74 (286)
T PRK12738 5 STKYLLQDAQANGYAVPA-----FN-----IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC
Confidence 357788999999997742 32 25788999999999999887544 322211 2334556777777777664
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+|. |-|........|+++|.+- +|+|-.
T Consensus 75 -VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~l 108 (286)
T PRK12738 75 -MPLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHF 108 (286)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCeEeecCCCC
Confidence 5777654 6677788899999999864 577654
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=87.05 E-value=14 Score=34.14 Aligned_cols=62 Identities=18% Similarity=0.039 Sum_probs=46.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEec
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 74 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~ 74 (327)
.-++.+.++|+|.| |-+...+| ..+++...+..+ .+++- ++-. .+..++.+++.|++.|-++
T Consensus 87 ~Ea~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fm----ad~~-~l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 87 VEAQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFV----CGAR-NLGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEE----ccCC-CHHHHHHHHHCCCCeeecc
Confidence 34678999999999 88899999 447788888877 34332 2322 2678899999999999865
|
|
| >PRK09234 fbiC FO synthase; Reviewed | Back alignment and domain information |
|---|
Probab=87.03 E-value=7.5 Score=41.43 Aligned_cols=76 Identities=20% Similarity=0.276 Sum_probs=58.8
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHHHHHHHhcCCCeEEEee---------cCCcCcHHHHH
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIPADRLAVHC---------HDTYGQALANI 233 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~~~~~~~~~~~~l~~H~---------Hn~~g~a~an~ 233 (327)
+..++|++.+.++.+.+.|+.+|++. .|. ...+.+.++++.+|+.+|+ +.+|. -...|+.+.-.
T Consensus 555 y~Ls~eeI~~~a~ea~~~G~tev~i~--gG~~p~~~~~~y~~lir~IK~~~p~--i~i~afsp~Ei~~~a~~~Gl~~~e~ 630 (843)
T PRK09234 555 YTLSLDEVADRAWEAWVAGATEVCMQ--GGIHPELPGTGYADLVRAVKARVPS--MHVHAFSPMEIVNGAARLGLSIREW 630 (843)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEe--cCCCCCcCHHHHHHHHHHHHHhCCC--eeEEecChHHHHHHHHHcCCCHHHH
Confidence 35688999999999999999999998 353 3456777889999998885 44443 24578888888
Q ss_pred HHHH-HhcCceee
Q psy12516 234 LTAM-EFGISVFD 245 (327)
Q Consensus 234 l~a~-~~G~~~vd 245 (327)
+..+ ++|.+.+.
T Consensus 631 l~~LkeAGLds~p 643 (843)
T PRK09234 631 LTALREAGLDTIP 643 (843)
T ss_pred HHHHHHhCcCccC
Confidence 7776 67998775
|
|
| >TIGR00683 nanA N-acetylneuraminate lyase | Back alignment and domain information |
|---|
Probab=86.98 E-value=12 Score=34.49 Aligned_cols=40 Identities=10% Similarity=0.017 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
...+..+++++.|..... . ..|+-.+.+.+.+.+.++.+.
T Consensus 84 ~~i~la~~a~~~Gad~v~--v---~~P~y~~~~~~~i~~yf~~v~ 123 (290)
T TIGR00683 84 EAVELGKYATELGYDCLS--A---VTPFYYKFSFPEIKHYYDTII 123 (290)
T ss_pred HHHHHHHHHHHhCCCEEE--E---eCCcCCCCCHHHHHHHHHHHH
Confidence 344445555566654221 1 123333445556666655554
|
N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=86.81 E-value=10 Score=35.79 Aligned_cols=92 Identities=12% Similarity=0.128 Sum_probs=57.7
Q ss_pred HHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc--CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeE
Q psy12516 141 VVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC--YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL 218 (327)
Q Consensus 141 ~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~--~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l 218 (327)
.++..+..++.+.+.+. .+++.+ +-+..+.++|+ |.|.+=-|. ..-..+.++++.+|+.+|+++|
T Consensus 77 ~~r~~~~~~l~v~~~vg----------~~~~~~-~~~~~Lv~ag~~~d~i~iD~a~--gh~~~~~e~I~~ir~~~p~~~v 143 (326)
T PRK05458 77 FIKDMHEQGLIASISVG----------VKDDEY-DFVDQLAAEGLTPEYITIDIAH--GHSDSVINMIQHIKKHLPETFV 143 (326)
T ss_pred HHHhccccccEEEEEec----------CCHHHH-HHHHHHHhcCCCCCEEEEECCC--CchHHHHHHHHHHHhhCCCCeE
Confidence 33555555775443211 334443 55666777854 988874444 3446788999999999998766
Q ss_pred EEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 219 AVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 219 ~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
..=-= + ....+..+.++|++.++.+..
T Consensus 144 i~g~V---~-t~e~a~~l~~aGad~i~vg~~ 170 (326)
T PRK05458 144 IAGNV---G-TPEAVRELENAGADATKVGIG 170 (326)
T ss_pred EEEec---C-CHHHHHHHHHcCcCEEEECCC
Confidence 55100 1 245668888999999775444
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.67 E-value=22 Score=31.48 Aligned_cols=117 Identities=20% Similarity=0.173 Sum_probs=70.2
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCeEEE--
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAV-- 220 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~~-- 220 (327)
+..+.++...+.+ |.. ..+.+.-..-++.+.+.|++.|-+.=-.|.. ....+.+-+..+++......+-+
T Consensus 54 ~~~~v~v~tVigF----P~G-~~~~~~K~~e~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIl 128 (221)
T PRK00507 54 KGSDVKVCTVIGF----PLG-ANTTAVKAFEAKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVII 128 (221)
T ss_pred CCCCCeEEEEecc----cCC-CChHHHHHHHHHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEe
Confidence 4457777665554 432 3455555555677888999987766555543 24566666777776543333333
Q ss_pred eec--CCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 221 HCH--DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 221 H~H--n~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
-.- ++..+ ..-+..++++|+++|-+|-. ++ .|.+++|.+-.+.+..+
T Consensus 129 Et~~L~~e~i-~~a~~~~~~agadfIKTsTG-~~--------~~gat~~~v~~m~~~~~ 177 (221)
T PRK00507 129 ETCLLTDEEK-VKACEIAKEAGADFVKTSTG-FS--------TGGATVEDVKLMRETVG 177 (221)
T ss_pred ecCcCCHHHH-HHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHHhC
Confidence 211 12222 55666789999999887654 33 34588888776666543
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.58 E-value=9.3 Score=33.42 Aligned_cols=125 Identities=18% Similarity=0.302 Sum_probs=73.3
Q ss_pred cHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCC-CCCh
Q psy12516 92 ATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG-AVPP 170 (327)
Q Consensus 92 ~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~-r~~~ 170 (327)
..++++..+...+.+.|.-.+|+- . +++++. ++. .-.+.+-+.+.--+ |+.. +.+|
T Consensus 30 ~~~~iv~~mA~Aa~~gGAvgiR~~-g-----------------v~dIka-i~~--~v~vPIIGIiKrd~--~~s~v~ITp 86 (229)
T COG3010 30 DSPEIVAAMALAAEQGGAVGIRIE-G-----------------VEDIKA-IRA--VVDVPIIGIIKRDY--PDSPVRITP 86 (229)
T ss_pred cchhHHHHHHHHHHhCCcceEeec-c-----------------hhhHHH-HHh--hCCCCeEEEEecCC--CCCCceecc
Confidence 344666666677777777766643 1 222222 111 22444444444321 1110 2222
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCCccCHH-HHHHHHHHHHHhcCCCeEEEeecCCcCcH----HHHHHHHHHhcCceee
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIGVGTPG-TMRLMLEDVLTVIPADRLAVHCHDTYGQA----LANILTAMEFGISVFD 245 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~-~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a----~an~l~a~~~G~~~vd 245 (327)
..+-.+.+.+.|++.|.+ |-+=.-.|. .+.++++. .+.|+ -+-|| +.-.+.|.++|+|.|-
T Consensus 87 --tlkeVd~L~~~Ga~IIA~-DaT~R~RP~~~~~~~i~~--~k~~~---------~l~MAD~St~ee~l~a~~~G~D~IG 152 (229)
T COG3010 87 --TLKEVDALAEAGADIIAF-DATDRPRPDGDLEELIAR--IKYPG---------QLAMADCSTFEEGLNAHKLGFDIIG 152 (229)
T ss_pred --cHHHHHHHHHCCCcEEEe-ecccCCCCcchHHHHHHH--hhcCC---------cEEEeccCCHHHHHHHHHcCCcEEe
Confidence 234455677899999987 444455666 77777776 22343 33343 5667889999999999
Q ss_pred eccccCCC
Q psy12516 246 SSIAGLGG 253 (327)
Q Consensus 246 ~s~~G~G~ 253 (327)
+|+.|+-+
T Consensus 153 TTLsGYT~ 160 (229)
T COG3010 153 TTLSGYTG 160 (229)
T ss_pred cccccccC
Confidence 99999876
|
|
| >PRK06294 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=86.51 E-value=31 Score=33.00 Aligned_cols=128 Identities=13% Similarity=0.164 Sum_probs=70.0
Q ss_pred cCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccC
Q psy12516 12 CYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASG 89 (327)
Q Consensus 12 ~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~g 89 (327)
++.|++..-+ -.++|..+.++++.+++. +..++.+-++-+. -....+.++ ++|+.++..++..+..
T Consensus 59 i~~iy~GGGTPs~l~~~~l~~ll~~i~~~-~~~eit~E~~P~~--~~~~~l~~l~~~G~nrislGvQS~~~--------- 126 (370)
T PRK06294 59 IDTVFFGGGTPSLVPPALIQDILKTLEAP-HATEITLEANPEN--LSESYIRALALTGINRISIGVQTFDD--------- 126 (370)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHhC-CCCeEEEEeCCCC--CCHHHHHHHHHCCCCEEEEccccCCH---------
Confidence 4567775433 445677788888887653 3344444332221 112334444 4666666655543331
Q ss_pred CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCC
Q psy12516 90 NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAV 168 (327)
Q Consensus 90 n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~ 168 (327)
+++..+ +. +-+ .+.+.+.++.+++.|+. +.+.+ ++|-|. -
T Consensus 127 -----~~L~~l---~R----------------------~~~----~~~~~~ai~~~~~~g~~~v~~Dl--i~GlPg---q 167 (370)
T PRK06294 127 -----PLLKLL---GR----------------------THS----SSKAIDAVQECSEHGFSNLSIDL--IYGLPT---Q 167 (370)
T ss_pred -----HHHHHc---CC----------------------CCC----HHHHHHHHHHHHHcCCCeEEEEe--ecCCCC---C
Confidence 111111 00 011 33456677788888885 55444 355564 3
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe
Q psy12516 169 PPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l 190 (327)
+.+.+.+-.+.+.+.+++.|.+
T Consensus 168 t~~~~~~~l~~~~~l~~~~is~ 189 (370)
T PRK06294 168 SLSDFIVDLHQAITLPITHISL 189 (370)
T ss_pred CHHHHHHHHHHHHccCCCeEEE
Confidence 6777888888888888876554
|
|
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=86.40 E-value=24 Score=31.66 Aligned_cols=94 Identities=18% Similarity=0.165 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHH-HHHHHHHHh-cCcee-ee
Q psy12516 172 NVTRVATALYKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL-ANILTAMEF-GISVF-DS 246 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~-an~l~a~~~-G~~~v-d~ 246 (327)
...+..+.+.+.|++.+.+-| ..|...=.+ .++++.+++..+ +|+..-. |... .-...+++. |++.+ -+
T Consensus 154 ~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~-ipvia~G----Gv~s~~d~~~~~~~~G~~gvivg 227 (253)
T PRK02083 154 DAVEWAKEVEELGAGEILLTSMDRDGTKNGYD-LELTRAVSDAVN-VPVIASG----GAGNLEHFVEAFTEGGADAALAA 227 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC-HHHHHHHHhhCC-CCEEEEC----CCCCHHHHHHHHHhCCccEEeEh
Confidence 456777888899999988833 445433222 456777776654 4666543 2222 223345544 77543 33
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 247 SIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 247 s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
+.. -.|..+++++...|++.|+.+.
T Consensus 228 ~al----------~~~~~~~~~~~~~~~~~~~~~~ 252 (253)
T PRK02083 228 SIF----------HFGEITIGELKAYLAEQGIPVR 252 (253)
T ss_pred HHH----------HcCCCCHHHHHHHHHHCCCccc
Confidence 333 2467999999999998888753
|
|
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=86.29 E-value=7.1 Score=38.88 Aligned_cols=69 Identities=13% Similarity=0.113 Sum_probs=54.1
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
.+.++.+.+.|++.|.+-++.|. +..+.+.++.+++.+|++++.+ -.+.....+..++++|++.|+.+.
T Consensus 230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~ 298 (486)
T PRK05567 230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI 298 (486)
T ss_pred HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence 67888899999998866555565 4678888999999998878777 234556778899999999999644
|
|
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=86.23 E-value=16 Score=33.21 Aligned_cols=51 Identities=6% Similarity=-0.033 Sum_probs=25.6
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCCCC-ccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDTIG-VGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.+...++++.+.+.|+|.+.+.-..- ..+++++.+.++.+.+.. ++|+.+
T Consensus 77 ~~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~-~~pi~i 128 (281)
T cd00408 77 STREAIELARHAEEAGADGVLVVPPYYNKPSQEGIVAHFKAVADAS-DLPVIL 128 (281)
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHhcC-CCCEEE
Confidence 444556666666666666544433222 234555555555555542 234443
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=86.13 E-value=11 Score=35.67 Aligned_cols=101 Identities=15% Similarity=0.195 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-EEecCCCC-ccCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-ISLGDTIG-VGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-i~l~Dt~G-~~~P~~~~~~~~~~~~~~~ 214 (327)
.+++++..|++.++-|-+ |. -++.+.+..+.+.+.+.+... |.+....- .+....+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~ 74 (347)
T PRK13399 5 TLRQLLDHAAENGYGVPA-----FN-----VNNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP 74 (347)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC
Confidence 467788999999997742 32 267889999999999998774 44433322 2334567777777777765
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
.+|+.+| =|-|........|+++|.+- +|+|-.
T Consensus 75 ~VPVaLH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l 109 (347)
T PRK13399 75 DIPICLH--QDHGNSPATCQSAIRSGFTSVMMDGSLL 109 (347)
T ss_pred CCcEEEE--CCCCCCHHHHHHHHhcCCCEEEEeCCCC
Confidence 5677765 46677788899999999875 699965
|
|
| >TIGR00089 RNA modification enzyme, MiaB family | Back alignment and domain information |
|---|
Probab=85.98 E-value=20 Score=35.00 Aligned_cols=88 Identities=18% Similarity=0.248 Sum_probs=51.9
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC--CeEEEEEeeeccCCCCCCCC
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTNG--IRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G--i~v~~~l~~~~g~~~~~r~~ 169 (327)
.++++.++.+. ..++..+.+ +.+.|+...+. .++. ...+.+.+.++.+++.| +.+...+ ++|.|.+ +
T Consensus 235 ~~ell~~m~~~--~~~~~~l~igiES~s~~vLk~-m~R~--~~~~~~~~~i~~lr~~~~~i~i~~~~--IvG~PgE---T 304 (429)
T TIGR00089 235 TDDLIELIAEN--PKVCKHLHLPVQSGSDRILKR-MNRK--YTREEYLDIVEKIRAKIPDAAITTDI--IVGFPGE---T 304 (429)
T ss_pred CHHHHHHHHhC--CCccCceeeccccCChHHHHh-CCCC--CCHHHHHHHHHHHHHHCCCCEEEeeE--EEECCCC---C
Confidence 35666665543 123455444 33445543332 2322 12456777888888888 5555444 4566754 6
Q ss_pred hHHHHHHHHHHHHcCcCEEEe
Q psy12516 170 PHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+.+.+..+.+.+.+.+.+.+
T Consensus 305 ~ed~~~tl~~i~~~~~~~~~~ 325 (429)
T TIGR00089 305 EEDFEETLDLVEEVKFDKLHS 325 (429)
T ss_pred HHHHHHHHHHHHhcCCCEeec
Confidence 788888888888888876653
|
This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related. |
| >PRK12677 xylose isomerase; Provisional | Back alignment and domain information |
|---|
Probab=85.96 E-value=34 Score=32.98 Aligned_cols=102 Identities=12% Similarity=0.131 Sum_probs=45.4
Q ss_pred HHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHH--H-HHHhh---hhhcccCcchhhhhhhh--hHHHHHHhh
Q psy12516 57 LANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATED--L-VYMLE---GKSMQCGVKEIAVFASA--SEMFSKRNI 127 (327)
Q Consensus 57 ~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~--v-~~~l~---~~~~~~Gid~i~l~~~~--sd~~~~~~l 127 (327)
+..+.+++ +.|..+.-++.+-....+|..+.-.+++.+. . +..++ +.+.+.|.+.+.+.... ++.-.....
T Consensus 69 ~~~lk~~l~~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~~~~~~~d~ 148 (384)
T PRK12677 69 IKRFKKALDETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRRYALRKVLRNIDLAAELGAKTYVMWGGREGAEYDAAKDV 148 (384)
T ss_pred HHHHHHHHHHcCCeeEEEecCCCCCccccCCcCCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCccCcccCCH
Confidence 34445555 4666655555543333344333222332221 1 11111 24556677666553221 000000011
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCeEEEEEee
Q psy12516 128 NCTIEESLERFSEVVSTALTNGIRVRGYISC 158 (327)
Q Consensus 128 ~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~ 158 (327)
....+...+.+..+.+++.+.|..|...+..
T Consensus 149 ~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp 179 (384)
T PRK12677 149 RAALDRYREAIDLLAAYVKDQGYDLRFALEP 179 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence 1112233455667778898877555555665
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=85.96 E-value=10 Score=33.10 Aligned_cols=159 Identities=14% Similarity=0.175 Sum_probs=87.1
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEeccc
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~ 76 (327)
+.++++.+.|+| .+-+.| |...|.-. .+.++++++. +..++..|..-.. ....+..+ ++|+++|-.=+-
T Consensus 16 ~~i~~l~~~g~d~lHiDiMD--g~fvpn~~~g~~~i~~i~~~-~~~~~DvHLMv~~---P~~~i~~~~~~g~~~i~~H~E 89 (201)
T PF00834_consen 16 EEIKRLEEAGADWLHIDIMD--GHFVPNLTFGPDIIKAIRKI-TDLPLDVHLMVEN---PERYIEEFAEAGADYITFHAE 89 (201)
T ss_dssp HHHHHHHHTT-SEEEEEEEB--SSSSSSB-B-HHHHHHHHTT-SSSEEEEEEESSS---GGGHHHHHHHHT-SEEEEEGG
T ss_pred HHHHHHHHcCCCEEEEeecc--cccCCcccCCHHHHHHHhhc-CCCcEEEEeeecc---HHHHHHHHHhcCCCEEEEccc
Confidence 356788899999 688899 66655432 4457777776 4588888886554 33455555 799998643222
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcch-----hhh---hhhhhHH--HHHHhhc----CChHHHHHHHHHHH
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKE-----IAV---FASASEM--FSKRNIN----CTIEESLERFSEVV 142 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~-----i~l---~~~~sd~--~~~~~l~----~s~ee~i~~~~~~v 142 (327)
.. ..+..++..+++.+++.|+-. +.. +...-|. ++..+-| .-.++.+++++++.
T Consensus 90 ~~------------~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~ 157 (201)
T PF00834_consen 90 AT------------EDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELR 157 (201)
T ss_dssp GT------------TTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHH
T ss_pred ch------------hCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHH
Confidence 11 235566677777666665421 000 0000000 0001111 12356788888888
Q ss_pred HHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 143 STALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 143 ~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
++..++|.++...+- +-.+. +.++++.++|+|.+..
T Consensus 158 ~~~~~~~~~~~I~vD--------GGI~~----~~~~~~~~aGad~~V~ 193 (201)
T PF00834_consen 158 KLIPENGLDFEIEVD--------GGINE----ENIKQLVEAGADIFVA 193 (201)
T ss_dssp HHHHHHTCGSEEEEE--------SSEST----TTHHHHHHHT--EEEE
T ss_pred HHHHhcCCceEEEEE--------CCCCH----HHHHHHHHcCCCEEEE
Confidence 888887766543222 12333 3355677889998764
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.76 E-value=33 Score=33.96 Aligned_cols=85 Identities=14% Similarity=0.134 Sum_probs=45.6
Q ss_pred HHHHHHhhhhhcccCcchhhh-hhhhhHHH-HHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCC
Q psy12516 94 EDLVYMLEGKSMQCGVKEIAV-FASASEMF-SKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 94 e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~-~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
++++.+|.+. ..|+..+++ +.+.|+.. ...+-+.+.+ .+.+.++.+++. ++.+... .++|.|.+ +
T Consensus 270 ~ell~~m~~~--~~g~~~i~iglQSgsd~vLk~m~R~~t~~----~~~~~i~~ir~~~~~~~i~~d--~IvGfPgE---T 338 (467)
T PRK14329 270 DDVLEVMAKY--DNICKHIHLPVQSGSDRILKLMNRKYTRE----WYLDRIDAIRRIIPDCGISTD--MIAGFPTE---T 338 (467)
T ss_pred HHHHHHHHhC--CCCCCeEEeCCCcCCHHHHHhcCCCCCHH----HHHHHHHHHHHhCCCCEEEEe--EEEeCCCC---C
Confidence 4555555432 124555555 23344432 2222233433 345566666665 4444443 34566654 6
Q ss_pred hHHHHHHHHHHHHcCcCEEE
Q psy12516 170 PHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+..+.+.+.+.+.+.
T Consensus 339 ~edf~~tl~~i~~l~~~~~~ 358 (467)
T PRK14329 339 EEDHQDTLSLMEEVGYDFAF 358 (467)
T ss_pred HHHHHHHHHHHHhhCCCeEe
Confidence 67788888888888877544
|
|
| >PRK08444 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=85.68 E-value=3.2 Score=39.54 Aligned_cols=112 Identities=13% Similarity=0.199 Sum_probs=70.0
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC-ccCHHHHHHHHHHHHHhcCCCeEEE-------eecCCcCcHHHHHHHHH
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG-VGTPGTMRLMLEDVLTVIPADRLAV-------HCHDTYGQALANILTAM 237 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~~~~~~~~~~~~~~~~~l~~-------H~Hn~~g~a~an~l~a~ 237 (327)
+..++|++.+.++.+.+.|++++.|.-... ....+.+.++++.+|+.+|++.+.. |.-...|+.+--++..+
T Consensus 78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~~~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~~L 157 (353)
T PRK08444 78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNYGYEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLEDM 157 (353)
T ss_pred ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCCCHHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 457889999999999999999999972211 1233677889999998888532221 11226788886666666
Q ss_pred -HhcCceeeeccccCCCCCC-----CCCCCCCccHHHHHHH---HHhCCCCCC
Q psy12516 238 -EFGISVFDSSIAGLGGCPY-----ARGASGNVATEDLVYM---LEGMGIETG 281 (327)
Q Consensus 238 -~~G~~~vd~s~~G~G~~p~-----~~g~~Gn~~~e~~~~~---l~~~g~~~~ 281 (327)
++|.+.+.. =|.-=| ..-.++-.+.++.+.. .++.|+.+.
T Consensus 158 keAGl~~~~g----~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~~~ 206 (353)
T PRK08444 158 LEYGVDSMPG----GGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKMSN 206 (353)
T ss_pred HHhCcccCCC----CCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCCcc
Confidence 779886543 111011 0001345566666555 456777643
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=85.64 E-value=14 Score=35.02 Aligned_cols=101 Identities=14% Similarity=0.177 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC-EEEecCCCCc-cCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY-EISLGDTIGV-GTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~ 214 (327)
.+++++..|++.++-|-+ |. -++.+.+..+.+.+.+.+.. .|.++..... +....+..++..+.+..+
T Consensus 5 ~~k~lL~~A~~~~yAVgA-----fN-----~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~ 74 (347)
T PRK09196 5 SLRQLLDHAAEHGYGVPA-----FN-----VNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYP 74 (347)
T ss_pred cHHHHHHHHHHcCceEEE-----ee-----eCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCC
Confidence 367788899999997752 32 26788999999999999876 4555444332 334556777777777666
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
.+|+.+|. |-|.....+..|+++|.+- +|+|-.
T Consensus 75 ~VPValHL--DHg~~~e~i~~ai~~GftSVMiDgS~l 109 (347)
T PRK09196 75 HIPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLK 109 (347)
T ss_pred CCcEEEEC--CCCCCHHHHHHHHHcCCCEEEecCCCC
Confidence 56777655 5566778899999999875 699865
|
|
| >PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac) | Back alignment and domain information |
|---|
Probab=85.60 E-value=5.1 Score=36.04 Aligned_cols=99 Identities=15% Similarity=0.124 Sum_probs=62.1
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHH--HHHHHHHhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRL--MLEDVLTVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~--~~~~~~~~~~ 214 (327)
..++++++.+.|..+.. + . +-.+.+++.+.++.+.+.|. +.+.+=-+.+.=+|.+=.+ .+..+++.++
T Consensus 102 n~~lL~~~A~tgkPvIl--S--T-----G~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~ 172 (241)
T PF03102_consen 102 NLPLLEYIAKTGKPVIL--S--T-----GMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG 172 (241)
T ss_dssp -HHHHHHHHTT-S-EEE--E--------TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST
T ss_pred CHHHHHHHHHhCCcEEE--E--C-----CCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC
Confidence 35677888888998753 2 2 35788999999999966654 5555566667766654444 4889999999
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCcee--eeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVF--DSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v--d~s~~ 249 (327)
.++|+--|-. | ...+++|+..||..| +.|+.
T Consensus 173 -~~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTld 205 (241)
T PF03102_consen 173 -VPVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLD 205 (241)
T ss_dssp -SEEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-
T ss_pred -CCEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECC
Confidence 7999988877 4 455789999999987 44544
|
It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A. |
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=85.49 E-value=26 Score=31.22 Aligned_cols=178 Identities=11% Similarity=0.050 Sum_probs=0.0
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEeccc
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~ 76 (327)
+.++++.+.|+| .+-+.| |...|.-. ...++.+++ ..++..|..-.. ..+++..+ ++|++.|-.=.-
T Consensus 29 ~el~~l~~~g~d~lHiDVMD--G~FVPNitfGp~~i~~i~~---~~~~DvHLMv~~---P~~~i~~~~~aGad~It~H~E 100 (228)
T PRK08091 29 ETLTTLSENQLRLLHFDIAD--GQFSPFFTVGAIAIKQFPT---HCFKDVHLMVRD---QFEVAKACVAAGADIVTLQVE 100 (228)
T ss_pred HHHHHHHHCCCCEEEEeccC--CCcCCccccCHHHHHHhCC---CCCEEEEeccCC---HHHHHHHHHHhCCCEEEEccc
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhc--ccC--cchhhhhhhhhHHHHHHh------------hcCChHHHHHHHHH
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSM--QCG--VKEIAVFASASEMFSKRN------------INCTIEESLERFSE 140 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~--~~G--id~i~l~~~~sd~~~~~~------------l~~s~ee~i~~~~~ 140 (327)
.... +..++..+++.++ +.| ++.-.=+....+...... =..-.++.++++++
T Consensus 101 a~~~------------~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~~ 168 (228)
T PRK08091 101 QTHD------------LALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQ 168 (228)
T ss_pred Cccc------------HHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHH
Q ss_pred HHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhc
Q psy12516 141 VVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 141 ~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+-++..++|+++...+-.-.. .+..+++.++|+|.+... +++..-.+..+.++.+|..+
T Consensus 169 lr~~~~~~~~~~~IeVDGGI~------------~~ti~~l~~aGaD~~V~G--SalF~~~d~~~~i~~l~~~~ 227 (228)
T PRK08091 169 VENRLGNRRVEKLISIDGSMT------------LELASYLKQHQIDWVVSG--SALFSQGELKTTLKEWKSSL 227 (228)
T ss_pred HHHHHHhcCCCceEEEECCCC------------HHHHHHHHHCCCCEEEEC--hhhhCCCCHHHHHHHHHHhh
|
|
| >cd01299 Met_dep_hydrolase_A Metallo-dependent hydrolases, subgroup A is part of the superfamily of metallo-dependent hydrolases, a large group of proteins that show conservation in their 3-dimensional fold (TIM barrel) and in details of their active site | Back alignment and domain information |
|---|
Probab=85.41 E-value=9.5 Score=35.60 Aligned_cols=90 Identities=16% Similarity=0.227 Sum_probs=60.0
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCC-----------ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIG-----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTA 236 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a 236 (327)
.+++++.+.+++..+.|++.|.+.-+.+ .++++++..++...++. +.++.+|++.+ .....+
T Consensus 117 ~~~~~~~~~v~~~~~~G~~~iK~~~~g~~~~~~~~~~~~~~~~e~l~~~~~~A~~~--g~~v~~H~~~~-----~~i~~~ 189 (342)
T cd01299 117 DGVEEVRAAVREQLRRGADQIKIMATGGVLSPGDPPPDTQFSEEELRAIVDEAHKA--GLYVAAHAYGA-----EAIRRA 189 (342)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEeccCCcCCCCCCCcccCcCHHHHHHHHHHHHHc--CCEEEEEeCCH-----HHHHHH
Confidence 3577888888888888999876654322 46788888888877764 46788888764 344567
Q ss_pred HHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 237 MEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 237 ~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
+++|++.++= +..-.++.+..+++.|+.
T Consensus 190 l~~G~~~i~H---------------~~~~~~~~~~~l~~~g~~ 217 (342)
T cd01299 190 IRAGVDTIEH---------------GFLIDDETIELMKEKGIF 217 (342)
T ss_pred HHcCCCEEee---------------cCCCCHHHHHHHHHCCcE
Confidence 7888876531 112235666677776654
|
The vast majority of the members have a conserved metal binding site, involving four histidines and one aspartic acid residue. In the common reaction mechanism, the metal ion (or ions) deprotonate a water molecule for a nucleophilic attack on the substrate. The function of this subgroup is unknown. |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=85.38 E-value=16 Score=33.50 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-EEecCCC-CccCHHHHHHHHHHHHHhcCCC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-ISLGDTI-GVGTPGTMRLMLEDVLTVIPAD 216 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-i~l~Dt~-G~~~P~~~~~~~~~~~~~~~~~ 216 (327)
+++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+... |.++... .......+..++..+.+... +
T Consensus 2 k~lL~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~-V 70 (276)
T cd00947 2 KELLKKAREGGYAVGA-----FN-----INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS-V 70 (276)
T ss_pred HHHHHHHHHCCceEEE-----Ee-----eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-C
Confidence 4577889999987742 21 256788888999999888764 4443322 22334567777777776653 5
Q ss_pred eEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 217 RLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 217 ~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
|+.+|. |-|........|+++|.+- +|+|-.
T Consensus 71 PV~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l 103 (276)
T cd00947 71 PVALHL--DHGSSFELIKRAIRAGFSSVMIDGSHL 103 (276)
T ss_pred CEEEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCC
Confidence 777755 5566678889999999864 577665
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >TIGR00674 dapA dihydrodipicolinate synthase | Back alignment and domain information |
|---|
Probab=85.24 E-value=16 Score=33.50 Aligned_cols=45 Identities=4% Similarity=-0.009 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec-CCCCccCHHHHHHHHHHHHHhc
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+.++..++++.+.+.|+|.+.+. -.....+++++.+.++.+.+..
T Consensus 78 s~~~~i~~a~~a~~~Gad~v~v~pP~y~~~~~~~i~~~~~~i~~~~ 123 (285)
T TIGR00674 78 ATEEAISLTKFAEDVGADGFLVVTPYYNKPTQEGLYQHFKAIAEEV 123 (285)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcCCcCCCCCHHHHHHHHHHHHhcC
Confidence 44555555555555565543332 2222234455555555555443
|
Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment. |
| >PRK14456 ribosomal RNA large subunit methyltransferase N; Provisional | Back alignment and domain information |
|---|
Probab=85.14 E-value=21 Score=34.28 Aligned_cols=162 Identities=13% Similarity=0.020 Sum_probs=86.1
Q ss_pred cCcCEEEecCCc-cccCHHHHHHHHHHHHhh-cCCCeeE--EEecCccchHHHHHHHHHHcCCc-EEEecccCCCCCCCC
Q psy12516 10 MGCYEISLGDTI-GVGTPGTMRLMLEDVLTV-IPADRLA--VHCHDTYGQALANILTAMEFGIS-VFDSSIAGLGGCPYA 84 (327)
Q Consensus 10 ~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~-~~~~~~~--~H~h~~~g~~~~~~~~a~~aG~~-~id~~~~glg~~p~~ 84 (327)
.++..|.+.-+. -.+.+..+.+.++.+++. .. ..++ --..++.|+- ..+..-.++|.+ .+-.|+.+....-+.
T Consensus 172 ~~v~nIvfmGmGEPLln~d~v~~~i~~l~~~~~~-~~is~r~ItisT~Gl~-~~i~~L~~~gl~~~LaiSL~a~~~e~r~ 249 (368)
T PRK14456 172 RGITNIVFMGMGEPLLNTDNVFEAVLTLSTRKYR-FSISQRKITISTVGIT-PEIDRLATSGLKTKLAVSLHSADQEKRE 249 (368)
T ss_pred CCccEEEEeCcCccccCHHHHHHHHHHHhccccc-cCcCcCeeEEECCCCh-HHHHHHHHcCCCceEEEEecCCCHHHHH
Confidence 456777776654 344455677777777653 21 1121 2234555643 344444478886 688888876653332
Q ss_pred CCcc---CCCcHHHHHHHhhhhhcccCcch-hhh--hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEee
Q psy12516 85 RGAS---GNVATEDLVYMLEGKSMQCGVKE-IAV--FASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISC 158 (327)
Q Consensus 85 ~~~~---gn~~~e~v~~~l~~~~~~~Gid~-i~l--~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~ 158 (327)
.... ...+.++++..+.....+.|... +++ ... +|-+ .+.+.++++++++...+|+..--.
T Consensus 250 ~i~P~~~~~~~l~~l~~~i~~~~~~~g~~V~ieyvLI~G---------vNDs----~eda~~L~~~l~~~~~~VnlIpyn 316 (368)
T PRK14456 250 RLMPQAARDYPLDELREALIGYASKTGEPVTLVYMLLEG---------INDS----PEDARKLIRFASRFFCKINLIDYN 316 (368)
T ss_pred HhccccCCCCCHHHHHHHHHHHHHhcCCeEEEEEEEEcC---------CCCC----HHHHHHHHHHHhcCCCeeEEeeec
Confidence 2211 13467787777766555555331 111 111 1212 345666777777766666543212
Q ss_pred ecc-CCCCCCCChHHHHHHHHHHHHcCcCE
Q psy12516 159 VVG-CPYEGAVPPHNVTRVATALYKMGCYE 187 (327)
Q Consensus 159 ~~g-~~~~~r~~~e~l~~~~~~~~~~g~~~ 187 (327)
.++ .++ .+.+.+.+.++.+.+.+.|...
T Consensus 317 ~~~~~~~-~~ps~e~i~~F~~~L~~~Gi~v 345 (368)
T PRK14456 317 SIVNIKF-EPVCSSTRERFRDRLLDAGLQV 345 (368)
T ss_pred cCCCCCC-CCCCHHHHHHHHHHHHHCCCcE
Confidence 221 122 2456677777777777777654
|
|
| >TIGR03569 NeuB_NnaB N-acetylneuraminate synthase | Back alignment and domain information |
|---|
Probab=85.12 E-value=6.5 Score=37.07 Aligned_cols=95 Identities=16% Similarity=0.184 Sum_probs=66.6
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC--EEEe-cCCCCccCHHHHHH--HHHHHHHhc
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY--EISL-GDTIGVGTPGTMRL--MLEDVLTVI 213 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~--~i~l-~Dt~G~~~P~~~~~--~~~~~~~~~ 213 (327)
.++++++.+.|..+- ++. +-.+.+++...++.+.+.|.. .|.| --+++.-+|..-.+ .+..+++.+
T Consensus 123 ~pLL~~~A~~gkPvi--lSt-------Gmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~~f 193 (329)
T TIGR03569 123 APLLKKIARFGKPVI--LST-------GMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKEAF 193 (329)
T ss_pred HHHHHHHHhcCCcEE--EEC-------CCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHHHh
Confidence 456777778898864 222 236889999999999999875 2333 33455555554444 377888888
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+ .++++--|-. | ...+++|+..||+.|+-
T Consensus 194 ~-~pVG~SdHt~-G--~~~~~aAvalGA~iIEk 222 (329)
T TIGR03569 194 D-LPVGYSDHTL-G--IEAPIAAVALGATVIEK 222 (329)
T ss_pred C-CCEEECCCCc-c--HHHHHHHHHcCCCEEEe
Confidence 6 6899855543 4 57789999999998754
|
This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine. |
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=85.03 E-value=14 Score=33.71 Aligned_cols=88 Identities=16% Similarity=0.233 Sum_probs=48.0
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe---cCCCCcc--CHHHHHHHHHHHHHh
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL---GDTIGVG--TPGTMRLMLEDVLTV 212 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l---~Dt~G~~--~P~~~~~~~~~~~~~ 212 (327)
..++.+.+++.|+.....+ +| .++++.+.++++... .-||+ .-++|.- .|.++.++++.+|+.
T Consensus 129 ~~~~~~~~~~~gl~~I~lv-----~p---~t~~~Ri~~i~~~a~----gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~ 196 (259)
T PF00290_consen 129 SEELREAAKKHGLDLIPLV-----AP---TTPEERIKKIAKQAS----GFIYLVSRMGVTGSRTELPDELKEFIKRIKKH 196 (259)
T ss_dssp HHHHHHHHHHTT-EEEEEE-----ET---TS-HHHHHHHHHH-S----SEEEEESSSSSSSTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCeEEEEE-----CC---CCCHHHHHHHHHhCC----cEEEeeccCCCCCCcccchHHHHHHHHHHHhh
Confidence 3455566777888753211 12 245555555554332 33444 4555543 478999999999988
Q ss_pred cCCCeEEEeecCCcCcHHHH--HHHHHHhcCcee
Q psy12516 213 IPADRLAVHCHDTYGQALAN--ILTAMEFGISVF 244 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~an--~l~a~~~G~~~v 244 (327)
. +.|+-+ |.++.+ -...+..|+|.|
T Consensus 197 ~-~~Pv~v------GFGI~~~e~~~~~~~~aDGv 223 (259)
T PF00290_consen 197 T-DLPVAV------GFGISTPEQAKKLAAGADGV 223 (259)
T ss_dssp T-SS-EEE------ESSS-SHHHHHHHHTTSSEE
T ss_pred c-CcceEE------ecCCCCHHHHHHHHccCCEE
Confidence 7 456665 555444 444455666543
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >TIGR03849 arch_ComA phosphosulfolactate synthase | Back alignment and domain information |
|---|
Probab=84.98 E-value=10 Score=33.99 Aligned_cols=52 Identities=13% Similarity=0.169 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i 188 (327)
+...++|+.+++.|++|-.-+..-+..+ ....+++.+++.+++..++|++.|
T Consensus 100 ~~~~rlI~~~~~~g~~v~~EvG~K~~~~-~~~~~~~~~i~~~~~~LeAGA~~V 151 (237)
T TIGR03849 100 EERCNLIERAKDNGFMVLSEVGKKSPEK-DSELTPDDRIKLINKDLEAGADYV 151 (237)
T ss_pred HHHHHHHHHHHhCCCeEeccccccCCcc-cccCCHHHHHHHHHHHHHCCCcEE
Confidence 3455667777777777643222211111 124667777777777778887744
|
This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679. |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=84.89 E-value=24 Score=30.23 Aligned_cols=151 Identities=19% Similarity=0.179 Sum_probs=91.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.+.|++.|.+..+.. . ..+.++.+++.+|+..+|....-+. ...-.++++|++.+.+ +.
T Consensus 20 ~~~~~l~~~G~~~vev~~~~~----~-~~~~i~~l~~~~~~~~iGag~v~~~----~~~~~a~~~Ga~~i~~-----p~- 84 (190)
T cd00452 20 ALAEALIEGGIRAIEITLRTP----G-ALEAIRALRKEFPEALIGAGTVLTP----EQADAAIAAGAQFIVS-----PG- 84 (190)
T ss_pred HHHHHHHHCCCCEEEEeCCCh----h-HHHHHHHHHHHCCCCEEEEEeCCCH----HHHHHHHHcCCCEEEc-----CC-
Confidence 567888999999888876533 2 3346778888887777776443322 2345666777777741 11
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
.. .++++++++.|..+. .|
T Consensus 85 ---------~~----------------------------------------------~~~~~~~~~~~~~~i------~g 103 (190)
T cd00452 85 ---------LD----------------------------------------------PEVVKAANRAGIPLL------PG 103 (190)
T ss_pred ---------CC----------------------------------------------HHHHHHHHHcCCcEE------CC
Confidence 00 123555666666542 11
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 162 CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 162 ~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
..+++++. ++.++|+|.|.+ +... |. -.++++.+++.+|.+|+..= -|.-..|....+++|+
T Consensus 104 -----v~t~~e~~----~A~~~Gad~i~~-~p~~---~~-g~~~~~~l~~~~~~~p~~a~----GGI~~~n~~~~~~~G~ 165 (190)
T cd00452 104 -----VATPTEIM----QALELGADIVKL-FPAE---AV-GPAYIKALKGPFPQVRFMPT----GGVSLDNAAEWLAAGV 165 (190)
T ss_pred -----cCCHHHHH----HHHHCCCCEEEE-cCCc---cc-CHHHHHHHHhhCCCCeEEEe----CCCCHHHHHHHHHCCC
Confidence 23454433 345689998887 3222 22 34567777776665565542 3666688888899998
Q ss_pred ceeee
Q psy12516 242 SVFDS 246 (327)
Q Consensus 242 ~~vd~ 246 (327)
+.|-+
T Consensus 166 ~~v~v 170 (190)
T cd00452 166 VAVGG 170 (190)
T ss_pred EEEEE
Confidence 76643
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK13361 molybdenum cofactor biosynthesis protein A; Provisional | Back alignment and domain information |
|---|
Probab=84.84 E-value=24 Score=33.14 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=9.7
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe
Q psy12516 169 PPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l 190 (327)
+.+++..+++++.+.|+..|.+
T Consensus 46 s~eei~~li~~~~~~Gv~~I~~ 67 (329)
T PRK13361 46 SLEELAWLAQAFTELGVRKIRL 67 (329)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE
Confidence 3344444444444444444444
|
|
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.84 E-value=16 Score=33.69 Aligned_cols=100 Identities=14% Similarity=0.113 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC-EEEecCCCCc-cCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY-EISLGDTIGV-GTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~ 214 (327)
.++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+.. +|.+....-. ..-..+..++..+.++.+
T Consensus 5 ~~k~iL~~A~~~~yaV~A-----fN-----v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK12857 5 TVAELLKKAEKGGYAVGA-----FN-----CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS 74 (284)
T ss_pred cHHHHHHHHHHcCCeEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC
Confidence 367788899999987642 21 25778899999999998876 4444443221 223445566666666654
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+|. |-|........|+++|.+- +|+|-.
T Consensus 75 -VPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l 108 (284)
T PRK12857 75 -VPVALHL--DHGTDFEQVMKCIRNGFTSVMIDGSKL 108 (284)
T ss_pred -CCEEEEC--CCCCCHHHHHHHHHcCCCeEEEeCCCC
Confidence 5777654 6667778899999999874 687765
|
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=84.82 E-value=34 Score=31.95 Aligned_cols=94 Identities=15% Similarity=0.206 Sum_probs=48.4
Q ss_pred HHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCC
Q psy12516 3 VASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGC 81 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~ 81 (327)
+++.+.+.|+..|.|..---.+.| ++.++++.+++..+..++.+ .+.|.-+...+..+ ++|.+.+..++.++...
T Consensus 57 ~i~~~~~~gi~~I~~tGGEPll~~-~l~~li~~i~~~~~~~~i~i---tTNG~ll~~~~~~L~~agl~~i~ISlds~~~e 132 (331)
T PRK00164 57 LVRAFVALGVRKVRLTGGEPLLRK-DLEDIIAALAALPGIRDLAL---TTNGYLLARRAAALKDAGLDRVNVSLDSLDPE 132 (331)
T ss_pred HHHHHHHCCCCEEEEECCCCcCcc-CHHHHHHHHHhcCCCceEEE---EcCchhHHHHHHHHHHcCCCEEEEEeccCCHH
Confidence 445566778888888542222222 35566666655422233433 33354444444444 67888888888766542
Q ss_pred CCCCCccCCCcHHHHHHHhh
Q psy12516 82 PYARGASGNVATEDLVYMLE 101 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~ 101 (327)
-|... .+....+.++..++
T Consensus 133 ~~~~i-~~~~~~~~vl~~i~ 151 (331)
T PRK00164 133 RFKAI-TGRDRLDQVLAGID 151 (331)
T ss_pred HhccC-CCCCCHHHHHHHHH
Confidence 22221 22234555555443
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=84.59 E-value=31 Score=31.23 Aligned_cols=164 Identities=12% Similarity=0.109 Sum_probs=86.3
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHH------H-----HHHhhcCChHHHHHHHHHHHHHHHH-cCCeEEEE
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEM------F-----SKRNINCTIEESLERFSEVVSTALT-NGIRVRGY 155 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~------~-----~~~~l~~s~ee~i~~~~~~v~~a~~-~Gi~v~~~ 155 (327)
.|-++.|..+..++ ...+.|+|.+.+=.+.||. . .-.+-+.+.++.++.+ +..++ ..+.+ .
T Consensus 10 aG~P~~e~~~~~~~-~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~----~~~r~~~~~p~--i 82 (250)
T PLN02591 10 AGDPDLDTTAEALR-LLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISML----KEVAPQLSCPI--V 82 (250)
T ss_pred CCCCCHHHHHHHHH-HHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHH----HHHhcCCCCCE--E
Confidence 46677777665443 3356788877775555552 1 1122244544544443 33332 22222 2
Q ss_pred EeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHH
Q psy12516 156 ISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 235 (327)
Q Consensus 156 l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~ 235 (327)
++. +..+.. ++ =+.++++.+.++|++.+.++| +.+++..++...+++. ++.+.+-.--+..-.-...++
T Consensus 83 lm~-Y~N~i~-~~---G~~~F~~~~~~aGv~GviipD----LP~ee~~~~~~~~~~~--gl~~I~lv~Ptt~~~ri~~ia 151 (250)
T PLN02591 83 LFT-YYNPIL-KR---GIDKFMATIKEAGVHGLVVPD----LPLEETEALRAEAAKN--GIELVLLTTPTTPTERMKAIA 151 (250)
T ss_pred EEe-cccHHH-Hh---HHHHHHHHHHHcCCCEEEeCC----CCHHHHHHHHHHHHHc--CCeEEEEeCCCCCHHHHHHHH
Confidence 222 111110 11 245678889999999999999 4678888888877764 233333332333333344444
Q ss_pred HHHhcCceeeeccccCCCCCCCCCCCC-CccHHHHHHHHHh
Q psy12516 236 AMEFGISVFDSSIAGLGGCPYARGASG-NVATEDLVYMLEG 275 (327)
Q Consensus 236 a~~~G~~~vd~s~~G~G~~p~~~g~~G-n~~~e~~~~~l~~ 275 (327)
+...|.=+. .|..|..+ .+++ ...+++.+..+++
T Consensus 152 ~~~~gFIY~-Vs~~GvTG-----~~~~~~~~~~~~i~~vk~ 186 (250)
T PLN02591 152 EASEGFVYL-VSSTGVTG-----ARASVSGRVESLLQELKE 186 (250)
T ss_pred HhCCCcEEE-eeCCCCcC-----CCcCCchhHHHHHHHHHh
Confidence 444444332 24444443 0334 4567787888876
|
|
| >cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively | Back alignment and domain information |
|---|
Probab=84.53 E-value=34 Score=31.75 Aligned_cols=107 Identities=16% Similarity=0.160 Sum_probs=62.7
Q ss_pred hcCChHHHHHHHHHHHHHH-HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHH
Q psy12516 127 INCTIEESLERFSEVVSTA-LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTM 202 (327)
Q Consensus 127 l~~s~ee~i~~~~~~v~~a-~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~ 202 (327)
-+.+.++.++.+.+.+..+ ++.|+.+...++.. ...+++...+..+.+.+++.+.+.=.|..| ..+++.+
T Consensus 102 ~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~------~~~~~~~~~~~~~~~~~~~~~~vvg~~l~~~~~~~~~~~~ 175 (325)
T cd01320 102 RGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGL------RHLSPESAQETLELALKYRDKGVVGFDLAGDEVGFPPEKF 175 (325)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEec------CCCCHHHHHHHHHHHHhccCCCEEEeecCCCCCCCCHHHH
Confidence 3566777777766666654 55688876544421 113456666666666665544222223322 3466777
Q ss_pred HHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCce
Q psy12516 203 RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISV 243 (327)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~ 243 (327)
..++...++. +.++.+|+..+.+ ..+...+++ .|+++
T Consensus 176 ~~~~~~A~~~--g~~v~~H~~E~~~--~~~~~~a~~~~g~~~ 213 (325)
T cd01320 176 VRAFQRAREA--GLRLTAHAGEAGG--PESVRDALDLLGAER 213 (325)
T ss_pred HHHHHHHHHC--CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence 7777777754 4678888876533 233455665 67764
|
ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases. |
| >TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme | Back alignment and domain information |
|---|
Probab=84.52 E-value=33 Score=33.29 Aligned_cols=50 Identities=14% Similarity=0.176 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHH--cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE
Q psy12516 135 LERFSEVVSTALT--NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 135 i~~~~~~v~~a~~--~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+.++.+++ .|+.+...++ +|.|.+ +.+.+.+..+.+.+.+.+.+.
T Consensus 272 ~~~~~~~v~~l~~~~~gi~i~~~~I--vG~PgE---T~ed~~~tl~~i~~~~~~~~~ 323 (414)
T TIGR01579 272 RDDFLKLVNKLRSVRPDYAFGTDII--VGFPGE---SEEDFQETLRMVKEIEFSHLH 323 (414)
T ss_pred HHHHHHHHHHHHHhCCCCeeeeeEE--EECCCC---CHHHHHHHHHHHHhCCCCEEE
Confidence 4557778888888 7888776655 455654 677888888888888887655
|
This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=84.52 E-value=21 Score=32.92 Aligned_cols=99 Identities=14% Similarity=0.081 Sum_probs=67.7
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-EEecCCC-CccCHHHHHHHHHHHHHhcCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-ISLGDTI-GVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-i~l~Dt~-G~~~P~~~~~~~~~~~~~~~~ 215 (327)
++++++.|++.|+-|-+ |. -++.+.+..+.+.+.+.+... |.++... ..+....+..++..+.+...
T Consensus 4 ~k~ll~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~- 72 (282)
T TIGR01858 4 TKYMLQDAQAGGYAVPA-----FN-----IHNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN- 72 (282)
T ss_pred HHHHHHHHHHcCCeEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC-
Confidence 56778899999997742 32 257789999999999998774 4443322 12334556677777776664
Q ss_pred CeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 216 DRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+|. |-|........|+++|.+- +|+|-.
T Consensus 73 VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~l 106 (282)
T TIGR01858 73 MPLALHL--DHHESLDDIRQKVHAGVRSAMIDGSHF 106 (282)
T ss_pred CCEEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCC
Confidence 5777654 5566678889999999864 566644
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >TIGR01928 menC_lowGC/arch o-succinylbenzoic acid (OSB) synthetase | Back alignment and domain information |
|---|
Probab=84.45 E-value=36 Score=31.88 Aligned_cols=65 Identities=12% Similarity=0.083 Sum_probs=36.4
Q ss_pred CCCCChHHHHHHHHHHHHcC-cCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHH
Q psy12516 165 EGAVPPHNVTRVATALYKMG-CYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTA 236 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g-~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a 236 (327)
++-.++..+.+ +.+.+ +|.+.+ |-.-+....+..++..... .. ++++.+|+|...|++++.++..
T Consensus 230 Es~~~~~~~~~----~~~~~~~dvi~~-d~~~~GGit~~~~~~~~A~-~~-gi~~~~~~~~es~i~~aa~~hl 295 (324)
T TIGR01928 230 ESITSLDDARN----LIELGNVKVINI-KPGRLGGLTEVQKAIETCR-EH-GAKVWIGGMLETGISRAFNVAL 295 (324)
T ss_pred CCcCCHHHHHH----HHHcCCCCEEEe-CcchhcCHHHHHHHHHHHH-Hc-CCeEEEcceEcccHHHHHHHHH
Confidence 44455555443 44444 566654 4433333344445444433 33 4689999998888887666543
|
This model describes the enzyme o-succinylbenzoic acid synthetase (menC) that is involved in one of the steps of the menaquinone biosynthesis pathway. It takes SHCHC and makes it into 2-succinylbenzoate. Included in this model are low GC gram positive bacteria and archaea. Also included in the seed and in the model are enzymes with the com-name of N-acylamino acid racemase (or the more general term, racemase / racemase family), which refers to the enzyme's industrial application as racemases, and not to its biological function as o-succinylbenzoic acid synthetase. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=84.42 E-value=14 Score=34.68 Aligned_cols=69 Identities=14% Similarity=0.092 Sum_probs=49.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|++.|.+-=+.| .+....++++.+++..|++++....- .....+..++++|++.|.++++
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~v~Vi~G~v----~t~~~A~~l~~aGaD~I~vg~g 165 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPNVDVIAGNV----VTAEAARDLIDAGADGVKVGIG 165 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCCceEEECCC----CCHHHHHHHHhcCCCEEEECCC
Confidence 567888999999877633334 33567788999999888677766222 3356678888999999997653
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >PRK03170 dihydrodipicolinate synthase; Provisional | Back alignment and domain information |
|---|
Probab=84.31 E-value=16 Score=33.67 Aligned_cols=31 Identities=19% Similarity=0.306 Sum_probs=14.1
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
|..+.+.+...+ +..++.|++.+-+.....+
T Consensus 17 g~iD~~~l~~~i-~~l~~~Gv~gi~~~Gs~GE 47 (292)
T PRK03170 17 GSVDFAALRKLV-DYLIANGTDGLVVVGTTGE 47 (292)
T ss_pred CCcCHHHHHHHH-HHHHHcCCCEEEECCcCCc
Confidence 455554443322 2334456665554444433
|
|
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=84.30 E-value=21 Score=32.99 Aligned_cols=100 Identities=12% Similarity=0.088 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCE-EEecCCC-CccCHHHHHHHHHHHHHhcC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYE-ISLGDTI-GVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~-i~l~Dt~-G~~~P~~~~~~~~~~~~~~~ 214 (327)
..+++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+... |.++... .......+..++..+.+...
T Consensus 5 ~~k~il~~A~~~~yaV~A-----fN-----~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~ 74 (284)
T PRK09195 5 STKQMLNNAQRGGYAVPA-----FN-----IHNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH 74 (284)
T ss_pred cHHHHHHHHHHcCceEEE-----EE-----eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC
Confidence 366788899999987642 21 257789999999999998764 4444322 22333456667777776654
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeeccc
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIA 249 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~ 249 (327)
+|+.+| =|-|........|+++|.+- +|+|-.
T Consensus 75 -VPV~lH--LDHg~~~e~i~~Ai~~GftSVM~DgS~l 108 (284)
T PRK09195 75 -HPLALH--LDHHEKFDDIAQKVRSGVRSVMIDGSHL 108 (284)
T ss_pred -CCEEEE--CCCCCCHHHHHHHHHcCCCEEEeCCCCC
Confidence 577765 46666789999999999864 577755
|
|
| >PF02662 FlpD: Methyl-viologen-reducing hydrogenase, delta subunit; InterPro: IPR003813 Methyl-viologen-reducing hydrogenase (MVH) is one of the enzymes involved in methanogenesis and coded in the mth-flp-mvh-mrt cluster of methane genes in Methanothermobacter thermautotrophicus (Methanobacterium thermoformicicum) [] | Back alignment and domain information |
|---|
Probab=84.23 E-value=8.9 Score=30.70 Aligned_cols=82 Identities=20% Similarity=0.113 Sum_probs=62.0
Q ss_pred HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCc
Q psy12516 30 RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109 (327)
Q Consensus 30 ~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gi 109 (327)
.++....+..+|.----+...+.......-++.|++.|++-|=+.-..-|+|.| ..||...+.-+..+++..-+.|+
T Consensus 15 ad~ag~~~~~~p~~vriIrvpC~Grv~~~~il~Af~~GADGV~V~gC~~g~Ch~---~~Gn~~a~~Rv~~~k~~L~~~Gi 91 (124)
T PF02662_consen 15 ADLAGVSRLQYPPNVRIIRVPCSGRVDPEFILRAFEKGADGVLVAGCHPGDCHY---REGNYRAEKRVERLKKLLEELGI 91 (124)
T ss_pred HHHHhhccCCCCCCeEEEEccCCCccCHHHHHHHHHcCCCEEEEeCCCCCCCCc---chhhHHHHHHHHHHHHHHHHcCC
Confidence 344555555566433345667777778889999999999999887788889999 67898888888888888788888
Q ss_pred chhhh
Q psy12516 110 KEIAV 114 (327)
Q Consensus 110 d~i~l 114 (327)
+.-++
T Consensus 92 ~~eRv 96 (124)
T PF02662_consen 92 EPERV 96 (124)
T ss_pred ChhHe
Confidence 75444
|
No specific functions have been assigned to the delta subunit.; GO: 0015948 methanogenesis, 0055114 oxidation-reduction process |
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=84.18 E-value=22 Score=30.48 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=52.4
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.+++...++++.+.+.|++.|.+..+.. . ..+.++.+++.+|++.++. ..|++ ...-.++.+|++++.+
T Consensus 13 ~~~~~~~~~~~~l~~~G~~~vev~~~~~----~-~~~~i~~l~~~~~~~~iGag~v~~~-----~~~~~a~~~Ga~~i~~ 82 (190)
T cd00452 13 DDAEDALALAEALIEGGIRAIEITLRTP----G-ALEAIRALRKEFPEALIGAGTVLTP-----EQADAAIAAGAQFIVS 82 (190)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEeCCCh----h-HHHHHHHHHHHCCCCEEEEEeCCCH-----HHHHHHHHcCCCEEEc
Confidence 4688999999999999999998876633 2 4447889999988777776 33433 3557788999999853
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=84.07 E-value=31 Score=30.91 Aligned_cols=181 Identities=15% Similarity=0.143 Sum_probs=94.8
Q ss_pred HHHHHHcCcCEEEe-----------cCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHH---HHHHHHH-HcCC
Q psy12516 4 ASALYKMGCYEISL-----------GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL---ANILTAM-EFGI 68 (327)
Q Consensus 4 ~~~~~~~g~~~i~~-----------~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~---~~~~~a~-~aG~ 68 (327)
++.+.++|.+.+.. +|. |.++..++...++.+.+.. .+|+..-.=+-+|... ...+..+ ++|+
T Consensus 22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~-~~lt~~e~~~~~~~I~~~~-~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~ 99 (238)
T PF13714_consen 22 ARLAERAGFDAIATSGAGVAASLGYPDG-GLLTLTEMLAAVRRIARAV-SIPVIVDADTGYGNDPENVARTVRELERAGA 99 (238)
T ss_dssp HHHHHHTT-SEEEEHHHHHHHHTTS-SS-S-S-HHHHHHHHHHHHHHS-SSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-
T ss_pred HHHHHHcCCCEEEechHHHHHHcCCCCC-CCCCHHHHHHHHHHHHhhh-cCcEEEEcccccCchhHHHHHHHHHHHHcCC
Confidence 35566778777665 365 8999999999999998887 4888888888888733 3333333 5777
Q ss_pred cEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 69 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 69 ~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.-+..-=. .|.. . ...-.+ .++..++++.+.+..++.
T Consensus 100 agi~IEDq---~~~~-~-~~~l~~--------------------------------------~ee~~~kI~Aa~~a~~~~ 136 (238)
T PF13714_consen 100 AGINIEDQ---RCGH-G-GKQLVS--------------------------------------PEEMVAKIRAAVDARRDP 136 (238)
T ss_dssp SEEEEESB---STTT-S-TT-B----------------------------------------HHHHHHHHHHHHHHHSST
T ss_pred cEEEeecc---ccCC-C-CCceeC--------------------------------------HHHHHHHHHHHHHhccCC
Confidence 76553222 1110 0 000112 233456666666666666
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ 228 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~ 228 (327)
++-+.+= .+++.. .....++.++-++...++|+|.|.+. |..+++++.++.+.+ + .|+-+..+ .+.
T Consensus 137 ~~~I~AR-TDa~~~---~~~~~deaI~R~~aY~eAGAD~ifi~---~~~~~~~i~~~~~~~----~-~Pl~v~~~--~~~ 202 (238)
T PF13714_consen 137 DFVIIAR-TDAFLR---AEEGLDEAIERAKAYAEAGADMIFIP---GLQSEEEIERIVKAV----D-GPLNVNPG--PGT 202 (238)
T ss_dssp TSEEEEE-ECHHCH---HHHHHHHHHHHHHHHHHTT-SEEEET---TSSSHHHHHHHHHHH----S-SEEEEETT--SSS
T ss_pred eEEEEEe-cccccc---CCCCHHHHHHHHHHHHHcCCCEEEeC---CCCCHHHHHHHHHhc----C-CCEEEEcC--CCC
Confidence 6433211 011100 01233555555666667888887753 345566655555544 2 46666553 222
Q ss_pred HHHHHHHHHHhcCceee
Q psy12516 229 ALANILTAMEFGISVFD 245 (327)
Q Consensus 229 a~an~l~a~~~G~~~vd 245 (327)
-+.-.-.+.|+++|-
T Consensus 203 --~~~~eL~~lGv~~v~ 217 (238)
T PF13714_consen 203 --LSAEELAELGVKRVS 217 (238)
T ss_dssp --S-HHHHHHTTESEEE
T ss_pred --CCHHHHHHCCCcEEE
Confidence 334444567777665
|
... |
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=84.07 E-value=3 Score=38.30 Aligned_cols=63 Identities=17% Similarity=0.066 Sum_probs=49.1
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
..-++.+.++|+|.| |-+..++| ..+++..+|+++ ++++-.=+- | +..++.+++.|++.|-++
T Consensus 86 ~~Ea~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~-~----l~EAlrai~~GadmI~Tt 148 (293)
T PRK04180 86 FVEAQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFVCGAR-N----LGEALRRIAEGAAMIRTK 148 (293)
T ss_pred HHHHHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEEccCC-C----HHHHHHHHHCCCCeeecc
Confidence 344678889999998 88888999 558889999888 455555222 1 578899999999999887
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=84.05 E-value=11 Score=37.52 Aligned_cols=73 Identities=18% Similarity=0.160 Sum_probs=53.3
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+...+.++.+.+.|++.|.+=-+.|. -..+.++++.+|+.+|+++|-.=-=.+ ...+..++++|+|.|-+.+.
T Consensus 226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~--~~~~~~~i~~ik~~~p~~~v~agnv~t----~~~a~~l~~aGad~v~vgig 298 (479)
T PRK07807 226 GDVAAKARALLEAGVDVLVVDTAHGH--QEKMLEALRAVRALDPGVPIVAGNVVT----AEGTRDLVEAGADIVKVGVG 298 (479)
T ss_pred hhHHHHHHHHHHhCCCEEEEeccCCc--cHHHHHHHHHHHHHCCCCeEEeeccCC----HHHHHHHHHcCCCEEEECcc
Confidence 45678888999999999887555565 567888999999999986655410011 35678888999998875333
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=84.03 E-value=31 Score=30.83 Aligned_cols=91 Identities=16% Similarity=0.165 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCC--CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCceeeec
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSS 247 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~--G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~vd~s 247 (327)
..+.++++++.+.|++.+.+-|.. |.....+ .++++.+++..+ +|+-.-. |.....-+..+. .-...+|+.
T Consensus 146 ~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~d-~~~i~~i~~~~~-ipviasG----Gi~s~~D~~~l~~~~~~GvdgV 219 (241)
T PRK14024 146 GDLWEVLERLDSAGCSRYVVTDVTKDGTLTGPN-LELLREVCARTD-APVVASG----GVSSLDDLRALAELVPLGVEGA 219 (241)
T ss_pred ccHHHHHHHHHhcCCCEEEEEeecCCCCccCCC-HHHHHHHHhhCC-CCEEEeC----CCCCHHHHHHHhhhccCCccEE
Confidence 466788888999999987776653 3444432 556677776643 4666522 222222222221 111224444
Q ss_pred cccCCCCCCCCCCCCCccHHHHHHHH
Q psy12516 248 IAGLGGCPYARGASGNVATEDLVYML 273 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~~~e~~~~~l 273 (327)
+.|-+- -.|..++++.+...
T Consensus 220 ~igra~------~~g~~~~~~~~~~~ 239 (241)
T PRK14024 220 IVGKAL------YAGAFTLPEALAVV 239 (241)
T ss_pred EEeHHH------HcCCCCHHHHHHHh
Confidence 444332 35677787766543
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=83.94 E-value=32 Score=32.03 Aligned_cols=137 Identities=10% Similarity=0.063 Sum_probs=75.7
Q ss_pred hhcccCcchhhhhhhh--------hHH--HHHHhhcCChHHHHHHHHHHHHHHHHc---CCeEEEEEeeeccCCCCCCCC
Q psy12516 103 KSMQCGVKEIAVFASA--------SEM--FSKRNINCTIEESLERFSEVVSTALTN---GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~--------sd~--~~~~~l~~s~ee~i~~~~~~v~~a~~~---Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
.+.+.|+|.+.+-... |+. +..-..+-+.+...+.+.++++..++. ++.+.+-++... ...+..+
T Consensus 149 ~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~--~~~~g~~ 226 (327)
T cd02803 149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADD--FVPGGLT 226 (327)
T ss_pred HHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhc--cCCCCCC
Confidence 4566888877664332 111 122234556666666677777776664 333332222110 0112357
Q ss_pred hHHHHHHHHHHHHcCcCEEEecCCCCccC----------HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 170 PHNVTRVATALYKMGCYEISLGDTIGVGT----------PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~----------P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
.++..++++.+.+.|+|.|.+......-. +..-.+.++.+++.++ +||..-.--+ ....+..+++.
T Consensus 227 ~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~Ggi~---t~~~a~~~l~~ 302 (327)
T cd02803 227 LEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK-IPVIAVGGIR---DPEVAEEILAE 302 (327)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC-CCEEEeCCCC---CHHHHHHHHHC
Confidence 88999999999999999998765432211 1223356677777664 4555422111 14556666776
Q ss_pred -cCceee
Q psy12516 240 -GISVFD 245 (327)
Q Consensus 240 -G~~~vd 245 (327)
|+|.|-
T Consensus 303 g~aD~V~ 309 (327)
T cd02803 303 GKADLVA 309 (327)
T ss_pred CCCCeee
Confidence 566543
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=83.90 E-value=29 Score=30.47 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHcCcCEEEecCC--CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHH-HHHHHHhcCcee
Q psy12516 171 HNVTRVATALYKMGCYEISLGDT--IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALAN-ILTAMEFGISVF 244 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt--~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an-~l~a~~~G~~~v 244 (327)
....++++.+.+.|++.+.+-|. .|...... .++++.+++..+ +|+..-. |....+ ...+.+.|++.+
T Consensus 146 ~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g~~-~~~i~~i~~~~~-ipvi~~G----Gi~~~~di~~~~~~Ga~gv 216 (234)
T cd04732 146 VSLEELAKRFEELGVKAIIYTDISRDGTLSGPN-FELYKELAAATG-IPVIASG----GVSSLDDIKALKELGVAGV 216 (234)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeecCCCccCCCC-HHHHHHHHHhcC-CCEEEec----CCCCHHHHHHHHHCCCCEE
Confidence 35567888889999998877664 45444322 456777776654 4555533 233222 344555677654
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.82 E-value=43 Score=32.99 Aligned_cols=85 Identities=12% Similarity=0.176 Sum_probs=47.0
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHH-HHHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCC
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEM-FSKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~-~~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~ 168 (327)
.++++.++.+.+. .+..+++ +.+.|+. +...+-+.+ .+.+.++++.+++. ++.+... .++|.|.+
T Consensus 247 ~~ell~~m~~~~~--~~~~l~lgvQSgsd~vLk~m~R~~t----~~~~~~~i~~lr~~~p~i~i~td--~IvGfPgE--- 315 (449)
T PRK14332 247 PDHLLSLMAKNPR--FCPNIHLPLQAGNTRVLEEMKRSYS----KEEFLDVVKEIRNIVPDVGITTD--IIVGFPNE--- 315 (449)
T ss_pred CHHHHHHHHhCCC--ccceEEECCCcCCHHHHHhhCCCCC----HHHHHHHHHHHHHhCCCCEEEEE--EEeeCCCC---
Confidence 3556666544321 2344444 2333443 223332334 34466677777776 4554443 34566654
Q ss_pred ChHHHHHHHHHHHHcCcCEE
Q psy12516 169 PPHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i 188 (327)
+.+.+.+..+.+.+.+.+.+
T Consensus 316 T~edf~~tl~~v~~l~~~~~ 335 (449)
T PRK14332 316 TEEEFEDTLAVVREVQFDMA 335 (449)
T ss_pred CHHHHHHHHHHHHhCCCCEE
Confidence 56788888888888888754
|
|
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=83.79 E-value=21 Score=32.93 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=55.0
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCC-----------ccCHHHHHHHHHHHHHhcCCCeEEEeecCC------cCcHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIG-----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDT------YGQAL 230 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~------~g~a~ 230 (327)
-++..+.+.++.+.++|+..|.|-|.++ +..+++....++..++...+.++.+=.--| +--|+
T Consensus 85 G~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 164 (285)
T TIGR02317 85 GEAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAI 164 (285)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHH
Confidence 4588889999999999999999999873 345677777777777765443444333222 23456
Q ss_pred HHHHHHHHhcCceee
Q psy12516 231 ANILTAMEFGISVFD 245 (327)
Q Consensus 231 an~l~a~~~G~~~vd 245 (327)
.-+.+..++|||.|=
T Consensus 165 ~Ra~ay~~AGAD~vf 179 (285)
T TIGR02317 165 ERAKAYVEAGADMIF 179 (285)
T ss_pred HHHHHHHHcCCCEEE
Confidence 677778899998653
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.78 E-value=40 Score=32.32 Aligned_cols=80 Identities=16% Similarity=0.238 Sum_probs=60.3
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC-CeEEEeecCCcCcH-HHHHHHHHHhcCce
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQA-LANILTAMEFGISV 243 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~-~~l~~H~Hn~~g~a-~an~l~a~~~G~~~ 243 (327)
+-..++.-.+.++.+.+.+.+.+.|.--.......++.+++..++..+|. .|..+ +|.+ ..+.+.++..|+|.
T Consensus 190 Gg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~kPryl-----~Gvg~P~~i~~~v~~GvD~ 264 (366)
T PRK00112 190 GGVYEDLRRESAKGLVEIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKPRYL-----MGVGTPEDLVEGVARGVDM 264 (366)
T ss_pred CCccHHHHHHHHHHHHhCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCcCCeEe-----cCCCCHHHHHHHHHcCCCE
Confidence 34566666777888889999999998854445788899999999988864 44433 3555 47889999999999
Q ss_pred eeecccc
Q psy12516 244 FDSSIAG 250 (327)
Q Consensus 244 vd~s~~G 250 (327)
+|++.-=
T Consensus 265 FD~~~p~ 271 (366)
T PRK00112 265 FDCVMPT 271 (366)
T ss_pred EeeCCcc
Confidence 9987753
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=83.77 E-value=26 Score=31.31 Aligned_cols=101 Identities=12% Similarity=0.022 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~ 214 (327)
.+.+.++++.+++.+..|.+-+.- + .+.....++++.+.+.|++.|.+-.... ..|.--.+.++.+++.++
T Consensus 120 p~~l~~iv~av~~~~~PVsvKiR~--~------~~~~~~~~~a~~l~~aGad~i~Vd~~~~-g~~~a~~~~I~~i~~~~~ 190 (231)
T TIGR00736 120 KELLKEFLTKMKELNKPIFVKIRG--N------CIPLDELIDALNLVDDGFDGIHVDAMYP-GKPYADMDLLKILSEEFN 190 (231)
T ss_pred HHHHHHHHHHHHcCCCcEEEEeCC--C------CCcchHHHHHHHHHHcCCCEEEEeeCCC-CCchhhHHHHHHHHHhcC
Confidence 455677777777777776543331 1 2345678999999999999998832211 122234667888888775
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.+||-- |.-=.....+++.++.||+-|-.+
T Consensus 191 ~ipIIg---NGgI~s~eda~e~l~~GAd~Vmvg 220 (231)
T TIGR00736 191 DKIIIG---NNSIDDIESAKEMLKAGADFVSVA 220 (231)
T ss_pred CCcEEE---ECCcCCHHHHHHHHHhCCCeEEEc
Confidence 445433 111112355677777888877653
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=83.73 E-value=20 Score=32.27 Aligned_cols=53 Identities=11% Similarity=0.132 Sum_probs=36.9
Q ss_pred CCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 163 PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 163 ~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
|+.+--+++.+.+.++++.+.|++.|.|-|.. ++.+.++.+++.- ++|-.|+-
T Consensus 81 ~~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~--i~ViaRtd 133 (240)
T cd06556 81 PFGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------WHIETLQMLTAAA--VPVIAHTG 133 (240)
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------HHHHHHHHHHHcC--CeEEEEeC
Confidence 33333366899999999999999999999963 4455667776542 45555543
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.69 E-value=46 Score=32.60 Aligned_cols=87 Identities=16% Similarity=0.178 Sum_probs=49.2
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCC
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
.++++..+.+.+ .++..+.+ +.+.|+...+. .++. ...+.+.++++.+++. |+.+...++ +|.|.+ +
T Consensus 245 ~~ell~~l~~~~--~~~~~l~igiqSgs~~vLk~-m~R~--~~~~~~~~~i~~lr~~~~gi~v~~~~I--vG~PgE---T 314 (444)
T PRK14325 245 TDDLIEAYADLP--KLVPFLHLPVQSGSDRILKA-MNRG--HTALEYKSIIRKLRAARPDIAISSDFI--VGFPGE---T 314 (444)
T ss_pred CHHHHHHHHcCC--cccCceeccCCcCCHHHHHh-CCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---C
Confidence 355666554432 12444444 23444433321 1221 1245677788888887 666665544 566654 5
Q ss_pred hHHHHHHHHHHHHcCcCEEE
Q psy12516 170 PHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.+.+..+.+.+.+.+.+.
T Consensus 315 ~ed~~~tl~~i~~~~~~~~~ 334 (444)
T PRK14325 315 DEDFEATMKLIEDVGFDQSF 334 (444)
T ss_pred HHHHHHHHHHHHhcCCCeee
Confidence 77788888888888877654
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=83.62 E-value=11 Score=33.04 Aligned_cols=71 Identities=15% Similarity=0.003 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCcc--CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVG--TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~--~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.+.+...++++.+.+.|++.|.+.|--+.. .++ .++.+++.. ++||.+. ++..-..-.-.+.++|++.|.
T Consensus 28 ~~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~----~~~~i~~~v-~iPi~~~---~~i~~~~~v~~~~~~Gad~v~ 99 (217)
T cd00331 28 REDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLE----DLRAVREAV-SLPVLRK---DFIIDPYQIYEARAAGADAVL 99 (217)
T ss_pred CCCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHH----HHHHHHHhc-CCCEEEC---CeecCHHHHHHHHHcCCCEEE
Confidence 455678999999999999999998876654 453 455555543 4677753 233334456778899999986
Q ss_pred e
Q psy12516 246 S 246 (327)
Q Consensus 246 ~ 246 (327)
.
T Consensus 100 l 100 (217)
T cd00331 100 L 100 (217)
T ss_pred E
Confidence 4
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=83.60 E-value=32 Score=30.96 Aligned_cols=91 Identities=24% Similarity=0.287 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHc---CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHH
Q psy12516 135 LERFSEVVSTALTN---GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVL 210 (327)
Q Consensus 135 i~~~~~~v~~a~~~---Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~ 210 (327)
+....+.++.+++. |+.|..+ |.+ | ...++++.++|++.|.- +...|....-.-.++++.++
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vlpy------c~d----d----~~~ar~l~~~G~~~vmPlg~pIGsg~Gi~~~~~I~~I~ 171 (248)
T cd04728 106 LPDPIETLKAAEILVKEGFTVLPY------CTD----D----PVLAKRLEDAGCAAVMPLGSPIGSGQGLLNPYNLRIII 171 (248)
T ss_pred ccCHHHHHHHHHHHHHCCCEEEEE------eCC----C----HHHHHHHHHcCCCEeCCCCcCCCCCCCCCCHHHHHHHH
Confidence 34455566666665 9988532 111 1 35678888999998722 13334322222244555666
Q ss_pred HhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCcee
Q psy12516 211 TVIPADRLAVHCHDTYGQA-LANILTAMEFGISVF 244 (327)
Q Consensus 211 ~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~v 244 (327)
+. +++++-.- -|.. ..-+..|++.|++.|
T Consensus 172 e~-~~vpVI~e----gGI~tpeda~~AmelGAdgV 201 (248)
T cd04728 172 ER-ADVPVIVD----AGIGTPSDAAQAMELGADAV 201 (248)
T ss_pred Hh-CCCcEEEe----CCCCCHHHHHHHHHcCCCEE
Confidence 65 33555442 2333 355678889999864
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >smart00518 AP2Ec AP endonuclease family 2 | Back alignment and domain information |
|---|
Probab=83.59 E-value=33 Score=30.85 Aligned_cols=138 Identities=16% Similarity=0.244 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC-hHHHHH---HHHHHHH--cCcCEEEecCCCC-----ccCHHH
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVP-PHNVTR---VATALYK--MGCYEISLGDTIG-----VGTPGT 201 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~-~e~l~~---~~~~~~~--~g~~~i~l~Dt~G-----~~~P~~ 201 (327)
..++.+++.++.|++.|....+.- .|. + ...+ .+.+.. ..+.+.+ .|+ .+.+--+.+ ..+|.+
T Consensus 81 ~~~~~l~~~i~~A~~lGa~~vv~h---~g~-~-~~~~~e~~~~~~~~~l~~l~~~~~gv-~l~lEn~~~~~~~~~~~~~~ 154 (273)
T smart00518 81 KSIERLIDEIKRCEELGIKALVFH---PGS-Y-LKQSKEEALNRIIESLNEVIDETKGV-VILLETTAGKGSQIGSTFED 154 (273)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEc---ccc-c-cCCCHHHHHHHHHHHHHHHHhccCCc-EEEEeccCCCCCccCCCHHH
Confidence 446778888888888888753321 111 1 1122 222333 3333332 233 344433322 136777
Q ss_pred HHHHHHHHHHhcCCCeEEE---eecCCcCc------HHHHHHHHHH--hc---Cceeeecccc-----CCCCCCCCCCCC
Q psy12516 202 MRLMLEDVLTVIPADRLAV---HCHDTYGQ------ALANILTAME--FG---ISVFDSSIAG-----LGGCPYARGASG 262 (327)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~---H~Hn~~g~------a~an~l~a~~--~G---~~~vd~s~~G-----~G~~p~~~g~~G 262 (327)
+.+++..+... |.+.+-+ |.|.. |. .....+..+. .| +.+|+..-+. -+.+-.+.| .|
T Consensus 155 ~~~ll~~v~~~-~~~g~~lD~gH~~~~-g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~~g~~~d~H~~~G-~G 231 (273)
T smart00518 155 LKEIIDLIKEL-DRIGVCIDTCHIFAA-GYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIELGSGKDRHENLG-EG 231 (273)
T ss_pred HHHHHHhcCCC-CCeEEEEEccchhhc-cCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCccCCCCccccCCC-CC
Confidence 77777766431 2222222 54432 22 1233333221 23 4445444321 111233344 68
Q ss_pred CccHHHHHHHHHhCCCC
Q psy12516 263 NVATEDLVYMLEGMGIE 279 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~ 279 (327)
..+.+.+...|+..+++
T Consensus 232 ~id~~~~~~~l~~~~~~ 248 (273)
T smart00518 232 YIGFEPFRLLMADKRFD 248 (273)
T ss_pred CCChHHHHHHhhChhhc
Confidence 99999999988875554
|
These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites |
| >smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM | Back alignment and domain information |
|---|
Probab=83.57 E-value=25 Score=29.49 Aligned_cols=54 Identities=20% Similarity=0.247 Sum_probs=38.6
Q ss_pred HHHHHHHHHHHHHcC-CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC
Q psy12516 135 LERFSEVVSTALTNG-IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT 193 (327)
Q Consensus 135 i~~~~~~v~~a~~~G-i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt 193 (327)
.++..+.++.+++.| +.+...+.. +-+ ..+.+.+.++++.+.+.|++.|.+..-
T Consensus 135 ~~~~~~~i~~~~~~g~~~v~~~~~~--g~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~ 189 (216)
T smart00729 135 VEDVLEAVEKLREAGPIKVSTDLIV--GLP---GETEEDFEETLKLLKELGPDRVSIFPL 189 (216)
T ss_pred HHHHHHHHHHHHHhCCcceEEeEEe--cCC---CCCHHHHHHHHHHHHHcCCCeEEeeee
Confidence 466777888888999 776655443 222 247789999999999999997765443
|
This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases. |
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=83.44 E-value=28 Score=33.36 Aligned_cols=28 Identities=14% Similarity=0.310 Sum_probs=15.7
Q ss_pred HHHHHHHHHHc-CcCEEEecCCCCccCHHH
Q psy12516 173 VTRVATALYKM-GCYEISLGDTIGVGTPGT 201 (327)
Q Consensus 173 l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~ 201 (327)
+.++++.+.+. |...+.+ .|.|.+.++.
T Consensus 123 l~eli~~l~~~~gi~~i~i-tTNG~lL~~~ 151 (373)
T PLN02951 123 IEDICLQLSSLKGLKTLAM-TTNGITLSRK 151 (373)
T ss_pred HHHHHHHHHhcCCCceEEE-eeCcchHHHH
Confidence 55566666554 5544444 4667665544
|
|
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=83.44 E-value=29 Score=31.28 Aligned_cols=90 Identities=23% Similarity=0.283 Sum_probs=51.2
Q ss_pred HHHHHHHHHHHHHc---CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec--CCCCccCHHHHHHHHHHH
Q psy12516 135 LERFSEVVSTALTN---GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG--DTIGVGTPGTMRLMLEDV 209 (327)
Q Consensus 135 i~~~~~~v~~a~~~---Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~--Dt~G~~~P~~~~~~~~~~ 209 (327)
+....+.++.+++. |+.|..+ |.+ + ...++++.++|++.| .+ ...|...+-.-.++++.+
T Consensus 106 lpd~~~tv~aa~~L~~~Gf~vlpy------c~~----d----~~~ak~l~~~G~~~v-mPlg~pIGsg~gi~~~~~i~~i 170 (250)
T PRK00208 106 LPDPIETLKAAEILVKEGFVVLPY------CTD----D----PVLAKRLEEAGCAAV-MPLGAPIGSGLGLLNPYNLRII 170 (250)
T ss_pred CcCHHHHHHHHHHHHHCCCEEEEE------eCC----C----HHHHHHHHHcCCCEe-CCCCcCCCCCCCCCCHHHHHHH
Confidence 33455556666665 9988532 111 1 356788889999987 33 334433222224446666
Q ss_pred HHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCcee
Q psy12516 210 LTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVF 244 (327)
Q Consensus 210 ~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~v 244 (327)
++. +++++-.-. |.. -.-+..|++.|++.|
T Consensus 171 ~e~-~~vpVIvea----GI~tpeda~~AmelGAdgV 201 (250)
T PRK00208 171 IEQ-ADVPVIVDA----GIGTPSDAAQAMELGADAV 201 (250)
T ss_pred HHh-cCCeEEEeC----CCCCHHHHHHHHHcCCCEE
Confidence 665 345555432 332 345677888998864
|
|
| >cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea | Back alignment and domain information |
|---|
Probab=83.24 E-value=10 Score=34.83 Aligned_cols=79 Identities=13% Similarity=0.111 Sum_probs=60.6
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCCCeEEEee-cCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPADRLAVHC-HDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~~~l~~H~-Hn~~g~a~an~l~a~~~G~ 241 (327)
+..+.+.+.++++.+.+.|++.|.++-|+| .++.++-.++++.+.+.... +-++. +++.--++.-+..|.++|+
T Consensus 15 g~iD~~~~~~li~~l~~~Gv~Gl~~~GstGE~~~Lt~eEr~~l~~~~~~~~~~--vi~gvg~~~~~~ai~~a~~a~~~Ga 92 (279)
T cd00953 15 NKIDKEKFKKHCENLISKGIDYVFVAGTTGLGPSLSFQEKLELLKAYSDITDK--VIFQVGSLNLEESIELARAAKSFGI 92 (279)
T ss_pred CCcCHHHHHHHHHHHHHcCCcEEEEcccCCCcccCCHHHHHHHHHHHHHHcCC--EEEEeCcCCHHHHHHHHHHHHHcCC
Confidence 568888999999999999999999999988 47788888888877776543 44443 4556666777788888898
Q ss_pred ceeee
Q psy12516 242 SVFDS 246 (327)
Q Consensus 242 ~~vd~ 246 (327)
+.+=.
T Consensus 93 d~v~v 97 (279)
T cd00953 93 YAIAS 97 (279)
T ss_pred CEEEE
Confidence 87654
|
This subfamily of enzymes is adapted for high thermostability and shows specificity for non-phosphorylated substrates. The enzyme catalyses the reversible aldol cleavage of 2-keto-3-dexoygluconate to pyruvate and glyceraldehyde, the third step of a modified non-phosphorylated Entner-Doudoroff pathway of glucose oxidation. KDG aldolase shows no significant sequence similarity to microbial 2-keto-3-deoxyphosphogluconate (KDPG) aldolases, and the enzyme shows no activity with glyceraldehyde 3-phosphate as substrate. The enzyme is a tetramer and a member of the DHDPS family of Schiff-base-dependent class I aldolases. |
| >cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis | Back alignment and domain information |
|---|
Probab=83.22 E-value=17 Score=33.28 Aligned_cols=44 Identities=5% Similarity=-0.027 Sum_probs=19.4
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec-CCCCccCHHHHHHHHHHHHHh
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTV 212 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~~~~~~~~~~~~ 212 (327)
+.++..++++.+.+.|+|.+.+. =.....+++++.+.++.+.+.
T Consensus 80 ~~~~~~~~a~~a~~~G~d~v~~~~P~~~~~~~~~l~~~~~~ia~~ 124 (284)
T cd00950 80 NTAEAIELTKRAEKAGADAALVVTPYYNKPSQEGLYAHFKAIAEA 124 (284)
T ss_pred cHHHHHHHHHHHHHcCCCEEEEcccccCCCCHHHHHHHHHHHHhc
Confidence 34445555555555555533322 222223444444444444443
|
It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=83.15 E-value=38 Score=31.25 Aligned_cols=197 Identities=15% Similarity=0.120 Sum_probs=105.1
Q ss_pred EecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHH---HHH-HHcCCcEEEecccCCCCCCCCCCccCCC
Q psy12516 16 SLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI---LTA-MEFGISVFDSSIAGLGGCPYARGASGNV 91 (327)
Q Consensus 16 ~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~---~~a-~~aG~~~id~~~~glg~~p~~~~~~gn~ 91 (327)
.++|. |.++..++.+.++.+.+..+ +|+..-.=+-+|. ..|+ +.. .++|+.-|..-=.-... +.|+.
T Consensus 49 G~pD~-g~lt~~e~~~~~~~I~~~~~-iPviaD~d~GyG~-~~~v~~tv~~~~~aG~agi~IEDq~~pK------~cgh~ 119 (285)
T TIGR02317 49 GLPDL-GITTLDEVAEDARRITRVTD-LPLLVDADTGFGE-AFNVARTVREMEDAGAAAVHIEDQVLPK------RCGHL 119 (285)
T ss_pred CCCCC-CCCCHHHHHHHHHHHHhccC-CCEEEECCCCCCC-HHHHHHHHHHHHHcCCeEEEEecCCCcc------ccCCC
Confidence 35665 57888888888888887764 7888888787777 5554 222 26777665422111000 11221
Q ss_pred cHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC-CCCCh
Q psy12516 92 ATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE-GAVPP 170 (327)
Q Consensus 92 ~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~-~r~~~ 170 (327)
....+ .+.++..++++.+.+... +..+. +..- .|. .....
T Consensus 120 ~g~~l--------------------------------v~~ee~~~kI~Aa~~a~~--~~d~~--IiAR---TDa~~~~g~ 160 (285)
T TIGR02317 120 PGKEL--------------------------------VSREEMVDKIAAAVDAKR--DEDFV--IIAR---TDARAVEGL 160 (285)
T ss_pred CCccc--------------------------------cCHHHHHHHHHHHHHhcc--CCCEE--EEEE---cCcccccCH
Confidence 10000 012222444443333222 22222 1111 111 12345
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE--eecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV--HCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~--H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
++.++-++...++|+|.|.+. |.-+++++.++.+. ++ .|+-+ -.....+ .-+.-..-+.|+++|-...
T Consensus 161 deAI~Ra~ay~~AGAD~vfi~---g~~~~e~i~~~~~~----i~-~Pl~~n~~~~~~~p--~~s~~eL~~lGv~~v~~~~ 230 (285)
T TIGR02317 161 DAAIERAKAYVEAGADMIFPE---ALTSLEEFRQFAKA----VK-VPLLANMTEFGKTP--LFTADELREAGYKMVIYPV 230 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEeC---CCCCHHHHHHHHHh----cC-CCEEEEeccCCCCC--CCCHHHHHHcCCcEEEEch
Confidence 677777888889999999874 45667776655554 44 35532 2222111 1123455577999887654
Q ss_pred ccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 249 AGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 249 ~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
..+ ++-...+++.+..++..|.
T Consensus 231 ~~~--------~aa~~a~~~~~~~l~~~g~ 252 (285)
T TIGR02317 231 TAF--------RAMNKAAEAVYNEIKEHGT 252 (285)
T ss_pred HHH--------HHHHHHHHHHHHHHHHcCC
Confidence 433 3456667777777776554
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=83.11 E-value=5.3 Score=35.21 Aligned_cols=145 Identities=19% Similarity=0.192 Sum_probs=94.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.+.|++.|.+. +.+|. -.+.++.+++.+|+..+|..+--+. .....|+++|++.+=+ .++.
T Consensus 31 ~i~~al~~~Gi~~iEit----l~~~~-~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fivs--P~~~-- 97 (212)
T PRK05718 31 PLAKALVAGGLPVLEVT----LRTPA-ALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVS--PGLT-- 97 (212)
T ss_pred HHHHHHHHcCCCEEEEe----cCCcc-HHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEEC--CCCC--
Confidence 57788899999998887 55664 4455788888889888998888776 6678888999988751 1111
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
. +++++|++.++...
T Consensus 98 -----------~----------------------------------------------~vi~~a~~~~i~~i-------- 112 (212)
T PRK05718 98 -----------P----------------------------------------------PLLKAAQEGPIPLI-------- 112 (212)
T ss_pred -----------H----------------------------------------------HHHHHHHHcCCCEe--------
Confidence 1 23555666666542
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc-CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhc
Q psy12516 162 CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG-TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFG 240 (327)
Q Consensus 162 ~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~-~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G 240 (327)
| +-.+|.+ +.++.++|++.+.+-+. +.. .| ..++.++.-+|.+++-. +-|....|.-.-+.+|
T Consensus 113 -P--G~~TptE----i~~a~~~Ga~~vKlFPa-~~~gg~----~~lk~l~~p~p~~~~~p----tGGV~~~ni~~~l~ag 176 (212)
T PRK05718 113 -P--GVSTPSE----LMLGMELGLRTFKFFPA-EASGGV----KMLKALAGPFPDVRFCP----TGGISPANYRDYLALP 176 (212)
T ss_pred -C--CCCCHHH----HHHHHHCCCCEEEEccc-hhccCH----HHHHHHhccCCCCeEEE----eCCCCHHHHHHHHhCC
Confidence 1 2245544 34577788888887542 111 22 35666676667655543 4577777888888887
|
|
| >PF05853 DUF849: Prokaryotic protein of unknown function (DUF849); InterPro: IPR008567 This family consists of several hypothetical prokaryotic proteins with no known function | Back alignment and domain information |
|---|
Probab=83.10 E-value=9 Score=35.10 Aligned_cols=127 Identities=17% Similarity=0.195 Sum_probs=78.2
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEe--c-CCCC--ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh-c
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISL--G-DTIG--VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF-G 240 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l--~-Dt~G--~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~-G 240 (327)
+.+++++.+-+.+..++|+..+-+ = |..| ...|+.+.+.+..+|+..|++.+..=+-.-.++....=++.++. .
T Consensus 22 P~tpeEia~~A~~c~~AGAa~vH~H~R~~~~G~~s~d~~~~~e~~~~IR~~~pd~iv~~Ttg~~~~~~~~~R~~~v~~~~ 101 (272)
T PF05853_consen 22 PITPEEIAADAVACYEAGAAIVHIHARDDEDGRPSLDPELYAEVVEAIRAACPDLIVQPTTGGGGGPDPEERLAHVEAWK 101 (272)
T ss_dssp --SHHHHHHHHHHHHHHTESEEEE-EE-TTTS-EE--HHHHHHHHHHHHHHSTTSEEEEESSTTTTSGHHHHCTHHHHH-
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEeecCCCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHHHhcC
Confidence 578899999999999999885433 2 4445 58899999999999999888777765555445555544455544 3
Q ss_pred Cce--eeeccccCC--CCCCCCCCCCCccHHHHHHHHHhCCCCCC---CChhhHHHHHHHHHH
Q psy12516 241 ISV--FDSSIAGLG--GCPYARGASGNVATEDLVYMLEGMGIETG---ADLTSLLRTGHYICG 296 (327)
Q Consensus 241 ~~~--vd~s~~G~G--~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~---~d~~~l~~~~~~~~~ 296 (327)
-+. +|..-..++ ...| ......+++++..+++.|+.+. +|...+..+..++++
T Consensus 102 pd~asl~~gs~n~~~~~~~~---~n~~~~~~~~~~~~~e~Gi~pe~ev~d~~~l~~~~~l~~~ 161 (272)
T PF05853_consen 102 PDMASLNPGSMNFGTRDRVY---INTPADARELARRMRERGIKPEIEVFDPGHLRNARRLIEK 161 (272)
T ss_dssp -SEEEEE-S-EEESGGCSEE------HHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHT
T ss_pred CCeEEecccccccccCCcee---cCCHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHHHC
Confidence 333 232222222 1000 1224556777888888888765 688888888777665
|
; PDB: 3C6C_A 2Y7G_B 2Y7F_B 2Y7D_D 2Y7E_B 3LOT_A 3FA5_B 3NO5_C 3E02_A 3E49_B .... |
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=83.09 E-value=6.1 Score=36.26 Aligned_cols=68 Identities=15% Similarity=0.065 Sum_probs=52.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
|-++.+.++|+|.|.+ |. ++|..+++.++.++...|.+.+..-. |....|+.+..+.|++.|-++..-
T Consensus 193 eea~~A~~~GaDiI~L-Dn---~~~e~l~~~v~~~~~~~~~~~ieAsG----gIt~~ni~~ya~~GvD~IsvG~l~ 260 (273)
T PRK05848 193 EEAKNAMNAGADIVMC-DN---MSVEEIKEVVAYRNANYPHVLLEASG----NITLENINAYAKSGVDAISSGSLI 260 (273)
T ss_pred HHHHHHHHcCCCEEEE-CC---CCHHHHHHHHHHhhccCCCeEEEEEC----CCCHHHHHHHHHcCCCEEEeChhh
Confidence 5678889999998886 65 59999999999876656655555543 345678888999999999977543
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=83.05 E-value=24 Score=32.13 Aligned_cols=167 Identities=16% Similarity=0.268 Sum_probs=93.0
Q ss_pred HHHHHHHHcCcCEEEe----cCCc---------------cccCHHHHHHHHHHHHhhcCCCeeEEEe-cCc-cchHHHHH
Q psy12516 2 KVASALYKMGCYEISL----GDTI---------------GVGTPGTMRLMLEDVLTVIPADRLAVHC-HDT-YGQALANI 60 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~----~Dt~---------------G~~~p~~~~~~~~~~~~~~~~~~~~~H~-h~~-~g~~~~~~ 60 (327)
++++.+.+.|+|.|.| .|.. .-.+...+-++++.+++..+..|+.+=+ -|. +..++.+.
T Consensus 28 ~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i~~~G~e~F 107 (259)
T PF00290_consen 28 EILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPIFQYGIERF 107 (259)
T ss_dssp HHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHHHHH-HHHH
T ss_pred HHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHHhccchHHH
Confidence 6788899999996554 3443 2345666677778888556667765522 222 44556666
Q ss_pred HHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHH
Q psy12516 61 LTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFS 139 (327)
Q Consensus 61 ~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~ 139 (327)
++.+ ++|++-+= +..| +.|+- .-+.....+.|++.+.+..+.+. -++++
T Consensus 108 ~~~~~~aGvdGlI--ipDL-------------P~ee~-~~~~~~~~~~gl~~I~lv~p~t~--------------~~Ri~ 157 (259)
T PF00290_consen 108 FKEAKEAGVDGLI--IPDL-------------PPEES-EELREAAKKHGLDLIPLVAPTTP--------------EERIK 157 (259)
T ss_dssp HHHHHHHTEEEEE--ETTS-------------BGGGH-HHHHHHHHHTT-EEEEEEETTS---------------HHHHH
T ss_pred HHHHHHcCCCEEE--EcCC-------------ChHHH-HHHHHHHHHcCCeEEEEECCCCC--------------HHHHH
Confidence 5555 67876433 2222 22222 12334556688888888777544 34455
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCC-ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHH
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAV-PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLML 206 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~-~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~ 206 (327)
.+.+.+ .|+ +|+....|.. ..+. -+..+.+..+.+.+.. .+-++--+|..+|+++..+.
T Consensus 158 ~i~~~a--~gF---iY~vs~~GvT-G~~~~~~~~l~~~i~~ik~~~--~~Pv~vGFGI~~~e~~~~~~ 217 (259)
T PF00290_consen 158 KIAKQA--SGF---IYLVSRMGVT-GSRTELPDELKEFIKRIKKHT--DLPVAVGFGISTPEQAKKLA 217 (259)
T ss_dssp HHHHH---SSE---EEEESSSSSS-STTSSCHHHHHHHHHHHHHTT--SS-EEEESSS-SHHHHHHHH
T ss_pred HHHHhC--CcE---EEeeccCCCC-CCcccchHHHHHHHHHHHhhc--CcceEEecCCCCHHHHHHHH
Confidence 555443 343 2332222221 1232 3567888888888776 33455578999999987765
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=83.04 E-value=54 Score=32.85 Aligned_cols=86 Identities=14% Similarity=0.184 Sum_probs=48.0
Q ss_pred HHHHHHHhhhhhcccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCC
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVP 169 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~ 169 (327)
.++++.++.+.+. ++..+++ +.+.|+...+. .++. ...+.+.++++.+++. |+.+...++ +|.|.+ +
T Consensus 253 ~~ell~~m~~~g~--~~~~l~lglQSgsd~iLk~-m~R~--~t~~~~~~~v~~lr~~~~~i~i~~~~I--vGfPgE---T 322 (502)
T PRK14326 253 TDDVIEAMAETPN--VCPQLHMPLQSGSDRVLRA-MRRS--YRSERFLGILEKVRAAMPDAAITTDII--VGFPGE---T 322 (502)
T ss_pred CHHHHHHHHhcCC--cCCcEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEEEEEE--EECCCC---C
Confidence 4567766654321 1344444 33445543332 2221 1234566777777775 666665444 566765 5
Q ss_pred hHHHHHHHHHHHHcCcCEE
Q psy12516 170 PHNVTRVATALYKMGCYEI 188 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i 188 (327)
.+.+.+..+.+.+.+.+.+
T Consensus 323 ~edf~~Tl~~i~~~~~~~~ 341 (502)
T PRK14326 323 EEDFQATLDVVREARFSSA 341 (502)
T ss_pred HHHHHHHHHHHHHcCCCEE
Confidence 6777788888888877643
|
|
| >PRK05926 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.00 E-value=12 Score=35.96 Aligned_cols=75 Identities=9% Similarity=0.118 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCeEEEeec---------CCcCcHHHHHH
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLAVHCH---------DTYGQALANIL 234 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~~H~H---------n~~g~a~an~l 234 (327)
..++|++.+.++.. +.|++++.|.. |.- ..+.+.++++.+++.+|+ +.+|.- +..|+...-.+
T Consensus 98 ~ls~eeI~~~a~~a-~~G~~ei~iv~--G~~p~~~~e~~~e~i~~Ik~~~p~--i~i~a~s~~Ei~~~~~~~~~~~~e~l 172 (370)
T PRK05926 98 FYTPDQLVQSIKEN-PSPITETHIVA--GCFPSCNLAYYEELFSKIKQNFPD--LHIKALTAIEYAYLSKLDNLPVKEVL 172 (370)
T ss_pred cCCHHHHHHHHHHH-hcCCCEEEEEe--CcCCCCCHHHHHHHHHHHHHhCCC--eeEEECCHHHHHHHHhhcCCCHHHHH
Confidence 45789999999888 79999999994 543 346778889999998885 444432 34466666766
Q ss_pred HHH-HhcCceeee
Q psy12516 235 TAM-EFGISVFDS 246 (327)
Q Consensus 235 ~a~-~~G~~~vd~ 246 (327)
..+ ++|.+.+..
T Consensus 173 ~~LkeAGl~~~~g 185 (370)
T PRK05926 173 QTLKIAGLDSIPG 185 (370)
T ss_pred HHHHHcCcCccCC
Confidence 666 669887654
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=82.98 E-value=29 Score=29.78 Aligned_cols=91 Identities=15% Similarity=0.059 Sum_probs=47.9
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhcC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~~ 214 (327)
...++.+++.|+++...++ + ..+.+.+.++ ..++|.+.+ +-+.|...+....+.++.+++..+
T Consensus 94 ~~~~~~~~~~g~~~~~~~~-----~---~t~~e~~~~~-----~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~~~ 160 (210)
T TIGR01163 94 HRLLQLIKDLGAKAGIVLN-----P---ATPLEFLEYV-----LPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMID 160 (210)
T ss_pred HHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHH-----HhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHHHH
Confidence 4455777778887643221 1 1233333322 124676655 333443223333345566655432
Q ss_pred ----CCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 215 ----ADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 215 ----~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
..++.+ ..|....|.-..++.|++.+=+
T Consensus 161 ~~~~~~~i~v----~GGI~~env~~l~~~gad~iiv 192 (210)
T TIGR01163 161 ENGLSILIEV----DGGVNDDNARELAEAGADILVA 192 (210)
T ss_pred hcCCCceEEE----ECCcCHHHHHHHHHcCCCEEEE
Confidence 234433 3377788888888999987543
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=82.58 E-value=19 Score=33.42 Aligned_cols=77 Identities=9% Similarity=0.213 Sum_probs=54.6
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCCc-cCHHHHHHHHHHHHHhcCCCeEEEeec---------CCcCcHHHHHHHH
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIGV-GTPGTMRLMLEDVLTVIPADRLAVHCH---------DTYGQALANILTA 236 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~~~~l~~H~H---------n~~g~a~an~l~a 236 (327)
..++|++.+.++.+.+.|+++|.|.+-... ..++.+.++++.+++..|. +.+|+= ...|+.....+..
T Consensus 35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~--i~~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD--VHIHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 578899999999999999999999843222 4567788999999988764 333321 2346555565655
Q ss_pred H-HhcCceee
Q psy12516 237 M-EFGISVFD 245 (327)
Q Consensus 237 ~-~~G~~~vd 245 (327)
+ ++|++.+.
T Consensus 113 LkeAGl~~i~ 122 (309)
T TIGR00423 113 LKKAGLDSMP 122 (309)
T ss_pred HHHcCCCcCC
Confidence 5 67998774
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=82.32 E-value=34 Score=30.09 Aligned_cols=81 Identities=21% Similarity=0.327 Sum_probs=55.7
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhcCCC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVIPAD 216 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~ 216 (327)
.++++++++.|+.+- | +-.+++++.+ +.++|+|.|.+ ++..| |. .++.++..+|++
T Consensus 99 ~~v~~~~~~~~i~~i---------P--G~~T~~E~~~----A~~~Gad~vklFPa~~~G---~~----~ik~l~~~~p~i 156 (213)
T PRK06552 99 RETAKICNLYQIPYL---------P--GCMTVTEIVT----ALEAGSEIVKLFPGSTLG---PS----FIKAIKGPLPQV 156 (213)
T ss_pred HHHHHHHHHcCCCEE---------C--CcCCHHHHHH----HHHcCCCEEEECCcccCC---HH----HHHHHhhhCCCC
Confidence 456888999999753 1 2356666543 45699999888 34333 44 366667777766
Q ss_pred eEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 217 RLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 217 ~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
++.. .-|....|.-.-+++|++.+-
T Consensus 157 p~~a----tGGI~~~N~~~~l~aGa~~va 181 (213)
T PRK06552 157 NVMV----TGGVNLDNVKDWFAAGADAVG 181 (213)
T ss_pred EEEE----ECCCCHHHHHHHHHCCCcEEE
Confidence 6553 457788999999999988653
|
|
| >PLN02433 uroporphyrinogen decarboxylase | Back alignment and domain information |
|---|
Probab=82.31 E-value=5.3 Score=37.84 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=35.5
Q ss_pred HHHHHHHHHHcCcCEEEecCCCC-ccCHHHHHHHH--------HHHHHhcCCCeEEEeecCCc
Q psy12516 173 VTRVATALYKMGCYEISLGDTIG-VGTPGTMRLML--------EDVLTVIPADRLAVHCHDTY 226 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G-~~~P~~~~~~~--------~~~~~~~~~~~l~~H~Hn~~ 226 (327)
+.++++...++|++.+.+.|+.+ .++|++..+++ ..+++..+..++.+|.+.+.
T Consensus 181 ~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~ 243 (345)
T PLN02433 181 VIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG 243 (345)
T ss_pred HHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH
Confidence 34455555678999999999555 67887776554 23333334567888988763
|
|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=82.21 E-value=9.3 Score=35.91 Aligned_cols=98 Identities=20% Similarity=0.203 Sum_probs=68.6
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.|.+...+.++++.++|++.++++= -+ .+-.+-+..+++..+ +||..-.|-|+-+| +.|+++|++.+---
T Consensus 31 ~Dv~atv~QI~~L~~aGceiVRvav----p~-~~~A~al~~I~~~~~-iPlVADIHFd~~lA----l~a~~~g~dkiRIN 100 (346)
T TIGR00612 31 IDIDSTVAQIRALEEAGCDIVRVTV----PD-RESAAAFEAIKEGTN-VPLVADIHFDYRLA----ALAMAKGVAKVRIN 100 (346)
T ss_pred hhHHHHHHHHHHHHHcCCCEEEEcC----CC-HHHHHhHHHHHhCCC-CCEEEeeCCCcHHH----HHHHHhccCeEEEC
Confidence 5677788888889999999776632 11 355667888998877 68998888887665 78899999876531
Q ss_pred cccCCCCCCCCCCCCCc----cHHHHHHHHHhCCC--CCCCChhhHH
Q psy12516 248 IAGLGGCPYARGASGNV----ATEDLVYMLEGMGI--ETGADLTSLL 288 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~----~~e~~~~~l~~~g~--~~~~d~~~l~ 288 (327)
.||. -+++++...++.|+ +.|+|--.|.
T Consensus 101 -------------PGNig~~e~v~~vv~~ak~~~ipIRIGVN~GSL~ 134 (346)
T TIGR00612 101 -------------PGNIGFRERVRDVVEKARDHGKAMRIGVNHGSLE 134 (346)
T ss_pred -------------CCCCCCHHHHHHHHHHHHHCCCCEEEecCCCCCc
Confidence 3343 45566777776554 4566765554
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=8.2 Score=36.35 Aligned_cols=69 Identities=13% Similarity=0.143 Sum_probs=48.4
Q ss_pred HHHHHHHHcCc--CEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGC--YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~--~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.+.++.++|+ |.|.+ |++- ..-..+.++++.+++.+|++++-.---. ....+..++++|++.+.++..
T Consensus 100 ~~~~~Lv~ag~~~d~i~i-D~a~-gh~~~~~e~I~~ir~~~p~~~vi~g~V~----t~e~a~~l~~aGad~i~vg~~ 170 (326)
T PRK05458 100 DFVDQLAAEGLTPEYITI-DIAH-GHSDSVINMIQHIKKHLPETFVIAGNVG----TPEAVRELENAGADATKVGIG 170 (326)
T ss_pred HHHHHHHhcCCCCCEEEE-ECCC-CchHHHHHHHHHHHhhCCCCeEEEEecC----CHHHHHHHHHcCcCEEEECCC
Confidence 56788999965 97776 4442 3345677889999999987665443222 245668888999999886654
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=82.13 E-value=39 Score=30.66 Aligned_cols=90 Identities=18% Similarity=0.140 Sum_probs=53.0
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCC
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 253 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~ 253 (327)
.++.+.+.++|++.+.++| +.+++..+++..+++. . +.+.+-+-.+.--.....+++...|.=++ .++.|..+
T Consensus 107 e~f~~~~~~aGvdGviipD----Lp~ee~~~~~~~~~~~-g-l~~I~lvap~t~~eri~~i~~~s~gfIY~-vs~~GvTG 179 (258)
T PRK13111 107 ERFAADAAEAGVDGLIIPD----LPPEEAEELRAAAKKH-G-LDLIFLVAPTTTDERLKKIASHASGFVYY-VSRAGVTG 179 (258)
T ss_pred HHHHHHHHHcCCcEEEECC----CCHHHHHHHHHHHHHc-C-CcEEEEeCCCCCHHHHHHHHHhCCCcEEE-EeCCCCCC
Confidence 4667788889999999988 4677888888877764 2 22333233333333445555554443332 36666443
Q ss_pred CCCCCCCC-CCccHHHHHHHHHh
Q psy12516 254 CPYARGAS-GNVATEDLVYMLEG 275 (327)
Q Consensus 254 ~p~~~g~~-Gn~~~e~~~~~l~~ 275 (327)
. ++ -...+++.+..+++
T Consensus 180 ----~-~~~~~~~~~~~i~~vk~ 197 (258)
T PRK13111 180 ----A-RSADAADLAELVARLKA 197 (258)
T ss_pred ----c-ccCCCccHHHHHHHHHh
Confidence 0 11 23457778887776
|
|
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=81.90 E-value=9.7 Score=36.52 Aligned_cols=80 Identities=13% Similarity=0.061 Sum_probs=57.0
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
..+++++.+.++.+.+.|+++|.|.. +.-...++.+.++++.+++.+|.+ .++. ..+.......-.++|++++
T Consensus 103 ~ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~i--~i~~---g~lt~e~l~~Lk~aGv~r~ 177 (371)
T PRK09240 103 TLDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSSV--SIEV---QPLSEEEYAELVELGLDGV 177 (371)
T ss_pred cCCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCCc--eecc---CCCCHHHHHHHHHcCCCEE
Confidence 35889999999999999999998864 222245688889999999888753 3322 3444455555568999997
Q ss_pred eeccccC
Q psy12516 245 DSSIAGL 251 (327)
Q Consensus 245 d~s~~G~ 251 (327)
...+--.
T Consensus 178 ~i~lET~ 184 (371)
T PRK09240 178 TVYQETY 184 (371)
T ss_pred EEEEecC
Confidence 7666643
|
|
| >PRK08446 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=81.89 E-value=11 Score=35.74 Aligned_cols=108 Identities=8% Similarity=0.045 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHH-------cCcCEEEecC-CCCccCHHHHHHHHHHHHHhc-CCCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 171 HNVTRVATALYK-------MGCYEISLGD-TIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 171 e~l~~~~~~~~~-------~g~~~i~l~D-t~G~~~P~~~~~~~~~~~~~~-~~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
+++..+.+.+.. .+++.|++.+ |--.+.|.++.+++..+++.+ ++.++.+-++-+ .+.........++|+
T Consensus 31 ~y~~~L~~Ei~~~~~~~~~~~v~~iyfGGGTPs~l~~~~l~~ll~~i~~~~~~~~eitiE~nP~-~~~~e~l~~l~~~Gv 109 (350)
T PRK08446 31 EYMQALCLDLKFELEQFTDEKIESVFIGGGTPSTVSAKFYEPIFEIISPYLSKDCEITTEANPN-SATKAWLKGMKNLGV 109 (350)
T ss_pred HHHHHHHHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhcCCCceEEEEeCCC-CCCHHHHHHHHHcCC
Confidence 355555555442 1567888887 666788888888888888764 334444444322 122233333346788
Q ss_pred ceeeeccccCCCCCC-CCCCC-CCccHHHHHHHHHhCCCC
Q psy12516 242 SVFDSSIAGLGGCPY-ARGAS-GNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 242 ~~vd~s~~G~G~~p~-~~g~~-Gn~~~e~~~~~l~~~g~~ 279 (327)
++|...+-++-..-+ ..||. ......+.+..+++.|++
T Consensus 110 nRiSiGvQS~~~~~L~~lgR~~~~~~~~~ai~~lr~~g~~ 149 (350)
T PRK08446 110 NRISFGVQSFNEDKLKFLGRIHSQKQIIKAIENAKKAGFE 149 (350)
T ss_pred CEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCC
Confidence 888776665542111 11231 222333444555666664
|
|
| >TIGR01212 radical SAM protein, TIGR01212 family | Back alignment and domain information |
|---|
Probab=81.85 E-value=44 Score=31.00 Aligned_cols=51 Identities=20% Similarity=0.299 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+.+.+.++.+++.|+.+.+.++ +|-|.+ +.+.+.+.++.+.+++++.|.+
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI--~GlPge---t~e~~~~t~~~l~~l~~d~i~i 212 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVI--LGLPGE---DREEMMETAKIVSLLDVDGIKI 212 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEE--ECCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence 34567788889999999876655 465654 5688889999999999986653
|
This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain. |
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=81.84 E-value=20 Score=32.10 Aligned_cols=99 Identities=19% Similarity=0.199 Sum_probs=67.7
Q ss_pred HHHHHHcCcCEEEecCC----CCccCHHHHHHHHHHHHHhcCCCeEEEeecC---CcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 177 ATALYKMGCYEISLGDT----IGVGTPGTMRLMLEDVLTVIPADRLAVHCHD---TYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 177 ~~~~~~~g~~~i~l~Dt----~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn---~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+..+.+.|+|.|-++|- .|-..|.-+++++..+... .+++.-.=| +.|.....++.+...|+|+|-..+.
T Consensus 13 A~~Al~~GaDiIDvK~P~~GaLGA~~p~vir~Iv~~~~~~---~pvSAtiGD~p~~p~~~~~aa~~~a~~GvDyVKvGl~ 89 (238)
T PRK02227 13 ALEALAGGADIIDVKNPKEGSLGANFPWVIREIVAAVPGR---KPVSATIGDVPYKPGTISLAALGAAATGADYVKVGLY 89 (238)
T ss_pred HHHHHhcCCCEEEccCCCCCCCCCCCHHHHHHHHHHhCCC---CCceeeccCCCCCchHHHHHHHHHHhhCCCEEEEcCC
Confidence 34566789999999984 5678899888888777643 344432222 3366777778888899999999887
Q ss_pred cCCCCC--------------------------CC-CCCCCCccHHHHHHHHHhCCC
Q psy12516 250 GLGGCP--------------------------YA-RGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 250 G~G~~p--------------------------~~-~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
|...-+ |+ .+|.|.++.+++.....+.|+
T Consensus 90 ~~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf 145 (238)
T PRK02227 90 GGKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGF 145 (238)
T ss_pred CCCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCC
Confidence 654210 22 236677778888877766543
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=81.80 E-value=31 Score=31.88 Aligned_cols=143 Identities=16% Similarity=0.171 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEE-EecCCCC-ccC-HHHHHHHHHHHHHhc
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEI-SLGDTIG-VGT-PGTMRLMLEDVLTVI 213 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i-~l~Dt~G-~~~-P~~~~~~~~~~~~~~ 213 (327)
.++++++.|++.++-|-+ |. -++.+.+..+.+.+.+.+...| .+....- .+. ...+..++..+.++.
T Consensus 5 ~~k~lL~~A~~~~yAV~A-----fN-----~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~ 74 (286)
T PRK08610 5 SMKEMLIDAKENGYAVGQ-----YN-----LNNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDL 74 (286)
T ss_pred cHHHHHHHHHHCCceEEE-----EE-----ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHc
Confidence 367788899999987642 32 2578899999999999987754 4433322 122 344677777777666
Q ss_pred C-CCeEEEeecCCcCcHHHHHHHHHHhcCce--eeecccc----------------------------CCCCCCCCCC--
Q psy12516 214 P-ADRLAVHCHDTYGQALANILTAMEFGISV--FDSSIAG----------------------------LGGCPYARGA-- 260 (327)
Q Consensus 214 ~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~--vd~s~~G----------------------------~G~~p~~~g~-- 260 (327)
. .+|+.+|. |.|........|+++|.+- +|+|-.. +|+ ..+.
T Consensus 75 ~~~vPV~lHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg---~ed~~~ 149 (286)
T PRK08610 75 NITIPVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGG---QEDDVV 149 (286)
T ss_pred CCCCCEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCC---ccCCCC
Confidence 4 25777654 5666788888999999864 5776542 221 0000
Q ss_pred ---CCCccHHHHHHHHHhCCCC----------------CCCChhhHHHHHHHH
Q psy12516 261 ---SGNVATEDLVYMLEGMGIE----------------TGADLTSLLRTGHYI 294 (327)
Q Consensus 261 ---~Gn~~~e~~~~~l~~~g~~----------------~~~d~~~l~~~~~~~ 294 (327)
.--++.|+...+.++.|+| +.+|++.|.++.+.+
T Consensus 150 ~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~ 202 (286)
T PRK08610 150 ADGIIYADPKECQELVEKTGIDALAPALGSVHGPYKGEPKLGFKEMEEIGLST 202 (286)
T ss_pred CcccccCCHHHHHHHHHHHCCCEEEeeccccccccCCCCCCCHHHHHHHHHHH
Confidence 0136788888888765543 457899888887643
|
|
| >PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=81.56 E-value=9.4 Score=35.86 Aligned_cols=68 Identities=15% Similarity=0.209 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHH----HHHHHhcCCCeEEEeecCCcCcHHHHHHHH-HHhcCcee
Q psy12516 173 VTRVATALYKMGCYEISLGDTIG---VGTPGTMRLML----EDVLTVIPADRLAVHCHDTYGQALANILTA-MEFGISVF 244 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~----~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a-~~~G~~~v 244 (327)
+.++++...++|++.|.+.|+.+ .++|+...+++ +++.+.+...+..+|++-+.. ..+.. .+.|++.+
T Consensus 182 ~~~~~~~~~~aGad~I~i~d~~a~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~ilH~cG~~~----~~l~~~~~~g~d~~ 257 (339)
T PRK06252 182 CIEYAKAQLEAGADVICIADPSASPELLGPKMFEEFVLPYLNKIIDEVKGLPTILHICGDLT----SILEEMADCGFDGI 257 (339)
T ss_pred HHHHHHHHHHcCCCEEEeCCCCccccccCHHHHHHHHHHHHHHHHHHhccCCcEEEECCCch----HHHHHHHhcCCCee
Confidence 34555666678999999999875 58898887765 344444432146678775542 22333 34577654
|
|
| >PRK06245 cofG FO synthase subunit 1; Reviewed | Back alignment and domain information |
|---|
Probab=81.54 E-value=47 Score=31.15 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc-----CcCEEEe------cCC----CCccCH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM-----GCYEISL------GDT----IGVGTP 199 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~-----g~~~i~l------~Dt----~G~~~P 199 (327)
.+...+.++.+++.|+.+...+..-++ + +.+...+....+.+. |++.+.+ ..| ....++
T Consensus 152 ~~~~l~~i~~a~~~Gi~~~~~~i~G~g---E---t~ed~~~~l~~l~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~ 225 (336)
T PRK06245 152 PELRLETIENAGKLKIPFTTGILIGIG---E---TWEDRAESLEAIAELHERYGHIQEVIIQNFSPKPGIPMENHPEPSL 225 (336)
T ss_pred HHHHHHHHHHHHHcCCceeeeeeeECC---C---CHHHHHHHHHHHHHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCH
Confidence 344577889999999988755553221 1 344444433333333 2443331 122 123567
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 200 GTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
.+..++++..|..+|. .+.+-.--.+|. .-...++.+|++-+++++..-|+ -..+... ..++++++.++++.|+.
T Consensus 226 ~e~l~~ia~~Rl~l~~-~i~i~~~~~~~~--~~~~~~L~~Gand~~g~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~g~~ 300 (336)
T PRK06245 226 EEMLRVVALARLILPP-DISIQVPPNLNR--DTGLLLLDAGADDLGGISPVTKD-YVNPEYP-WPDIEELREILEEAGWP 300 (336)
T ss_pred HHHHHHHHHHHHHCCC-CceEecCCccch--HHHHHHHhcCCccccCCccCCCc-eeCCCCC-CCCHHHHHHHHHHcCCC
Confidence 8888888888888764 232221123333 33456699999999888876554 1111112 35889999999988865
Q ss_pred C
Q psy12516 280 T 280 (327)
Q Consensus 280 ~ 280 (327)
.
T Consensus 301 ~ 301 (336)
T PRK06245 301 L 301 (336)
T ss_pred c
Confidence 4
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=81.45 E-value=44 Score=30.76 Aligned_cols=78 Identities=14% Similarity=-0.005 Sum_probs=52.9
Q ss_pred CChHHHHHHHHHHHHcC--cCEEEec--C--CC--C---ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHH
Q psy12516 168 VPPHNVTRVATALYKMG--CYEISLG--D--TI--G---VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTA 236 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g--~~~i~l~--D--t~--G---~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a 236 (327)
.+++.+.+.++.+.+.+ +|.|.|- - +. | ...|+.+.++++.+|+... .||.+-.-.+.--...-+..+
T Consensus 100 ~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~-~pv~vKi~~~~~~~~~~a~~l 178 (300)
T TIGR01037 100 SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD-VPVFAKLSPNVTDITEIAKAA 178 (300)
T ss_pred CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC-CCEEEECCCChhhHHHHHHHH
Confidence 46788899999998763 7766552 1 11 2 2478899999999998764 577766543332334445566
Q ss_pred HHhcCceeee
Q psy12516 237 MEFGISVFDS 246 (327)
Q Consensus 237 ~~~G~~~vd~ 246 (327)
.++|++.|..
T Consensus 179 ~~~G~d~i~v 188 (300)
T TIGR01037 179 EEAGADGLTL 188 (300)
T ss_pred HHcCCCEEEE
Confidence 7899998854
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=81.37 E-value=67 Score=32.79 Aligned_cols=72 Identities=13% Similarity=-0.008 Sum_probs=44.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+.++++.++|++.+++.=. +.-....++.+.+.+++.--.+|+..-.|-++-.| +.|+++ ++-|-..=+.+|
T Consensus 45 ~Qi~~l~~aGceiVRvtv~-~~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A----~~a~~~-v~kiRINPGN~~ 116 (611)
T PRK02048 45 AQAKRIIDAGGEYVRLTTQ-GVREAENLMNINIGLRSQGYMVPLVADVHFNPKVA----DVAAQY-AEKVRINPGNYV 116 (611)
T ss_pred HHHHHHHHcCCCEEEEcCC-CHHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHH----HHHHHh-hCCEEECCCcCC
Confidence 5678999999998887521 22223334444444433322388888888888664 566666 776664444554
|
|
| >TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase | Back alignment and domain information |
|---|
Probab=81.37 E-value=45 Score=30.78 Aligned_cols=70 Identities=13% Similarity=0.060 Sum_probs=44.6
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~i 71 (327)
+.++.+.+.|++.|.+.=|+| .+|.++-.++++.+.+...+ +++-.|.=.+..-++..+..|.++|++.+
T Consensus 30 ~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Gadav 103 (296)
T TIGR03249 30 ENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGADGY 103 (296)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCCCEE
Confidence 457788899999999998886 56677777777766666543 45544432223333444444455666655
|
5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate. |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=81.35 E-value=21 Score=31.99 Aligned_cols=77 Identities=18% Similarity=0.264 Sum_probs=51.4
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCC-CC-----ccCHHHHHHHHHHHHHhcCCCeEEEeecCCc--------CcHHHHHH
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDT-IG-----VGTPGTMRLMLEDVLTVIPADRLAVHCHDTY--------GQALANIL 234 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt-~G-----~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~--------g~a~an~l 234 (327)
++..+.+.++.+.++|+-.|.|-|. .| +..+++..+.++..++...+..+-+=.--|- --++.-..
T Consensus 83 ~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~ 162 (238)
T PF13714_consen 83 DPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAK 162 (238)
T ss_dssp SHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHH
Confidence 4889999999999999999999999 33 4577888888888887654322333222221 23455666
Q ss_pred HHHHhcCceee
Q psy12516 235 TAMEFGISVFD 245 (327)
Q Consensus 235 ~a~~~G~~~vd 245 (327)
+-.++|||.|=
T Consensus 163 aY~eAGAD~if 173 (238)
T PF13714_consen 163 AYAEAGADMIF 173 (238)
T ss_dssp HHHHTT-SEEE
T ss_pred HHHHcCCCEEE
Confidence 77899999654
|
... |
| >PLN02951 Molybderin biosynthesis protein CNX2 | Back alignment and domain information |
|---|
Probab=81.32 E-value=52 Score=31.54 Aligned_cols=69 Identities=22% Similarity=0.292 Sum_probs=35.0
Q ss_pred HHHHHHHcCcCEEEecCCccccCHH---HHHHHHHHHHhhcCCCe-eEEEecCccchHHHHHHHHH-HcCCcEEEecccC
Q psy12516 3 VASALYKMGCYEISLGDTIGVGTPG---TMRLMLEDVLTVIPADR-LAVHCHDTYGQALANILTAM-EFGISVFDSSIAG 77 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~~~p~---~~~~~~~~~~~~~~~~~-~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~g 77 (327)
+++.+.+.|+..|.+. .| .|. ++.++++.+++. ++.. + ...+.|.-+......+ ++|++.|.+++.+
T Consensus 98 ~i~~~~~~Gv~~I~~t--GG--EPllr~dl~eli~~l~~~-~gi~~i---~itTNG~lL~~~~~~L~~aGld~VnISLDs 169 (373)
T PLN02951 98 LAGLFVAAGVDKIRLT--GG--EPTLRKDIEDICLQLSSL-KGLKTL---AMTTNGITLSRKLPRLKEAGLTSLNISLDT 169 (373)
T ss_pred HHHHHHHCCCCEEEEE--CC--CCcchhhHHHHHHHHHhc-CCCceE---EEeeCcchHHHHHHHHHhCCCCeEEEeecc
Confidence 3444556677777663 22 332 244444444432 2221 2 1245555555444444 6777777777776
Q ss_pred CC
Q psy12516 78 LG 79 (327)
Q Consensus 78 lg 79 (327)
+.
T Consensus 170 l~ 171 (373)
T PLN02951 170 LV 171 (373)
T ss_pred CC
Confidence 54
|
|
| >cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds | Back alignment and domain information |
|---|
Probab=81.27 E-value=41 Score=30.24 Aligned_cols=38 Identities=16% Similarity=0.100 Sum_probs=26.6
Q ss_pred HHHHHHcCcCEEEecCCc----------cccCHHHHHHHHHHHHhhcC
Q psy12516 4 ASALYKMGCYEISLGDTI----------GVGTPGTMRLMLEDVLTVIP 41 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~----------G~~~p~~~~~~~~~~~~~~~ 41 (327)
++.+.++|+|.|.+.|.. +..+..++...++.+.+..+
T Consensus 25 A~i~e~aG~dai~v~~s~~a~~~G~pD~~~vtl~em~~~~~~I~r~~~ 72 (240)
T cd06556 25 AKQFADAGLNVMLVGDSQGMTVAGYDDTLPYPVNDVPYHVRAVRRGAP 72 (240)
T ss_pred HHHHHHcCCCEEEEChHHHHHhcCCCCCCCcCHHHHHHHHHHHHhhCC
Confidence 566778899999998876 34455566666666666554
|
Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT). |
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=81.15 E-value=8.3 Score=38.62 Aligned_cols=68 Identities=15% Similarity=0.104 Sum_probs=48.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
+.++.+.++|+|.|.+ |++- .....+-+.++++++.+|+.++-.=-..+ ...+..++++|++.|-+++
T Consensus 251 ~r~~~l~~ag~d~i~i-D~~~-g~~~~~~~~i~~ik~~~p~~~vi~g~v~t----~e~a~~a~~aGaD~i~vg~ 318 (505)
T PLN02274 251 ERLEHLVKAGVDVVVL-DSSQ-GDSIYQLEMIKYIKKTYPELDVIGGNVVT----MYQAQNLIQAGVDGLRVGM 318 (505)
T ss_pred HHHHHHHHcCCCEEEE-eCCC-CCcHHHHHHHHHHHHhCCCCcEEEecCCC----HHHHHHHHHcCcCEEEECC
Confidence 6788999999999887 7652 23334456799999999876654332222 3457888899999998754
|
|
| >PRK05927 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=80.95 E-value=15 Score=35.06 Aligned_cols=78 Identities=12% Similarity=0.148 Sum_probs=57.5
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCe------EEE-eecCCcCcHHHHHHH
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADR------LAV-HCHDTYGQALANILT 235 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~------l~~-H~Hn~~g~a~an~l~ 235 (327)
+..+++++.+.++.+.+.|+..+.+ +.|.- ..+.+.++++.+|+.+|++. +++ |.-...|+.....+.
T Consensus 74 y~ls~eei~~~a~~~~~~G~~~i~i--~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~ 151 (350)
T PRK05927 74 YLLSFDEFRSLMQRYVSAGVKTVLL--QGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALE 151 (350)
T ss_pred cccCHHHHHHHHHHHHHCCCCEEEE--eCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHH
Confidence 3678999999999999999999998 45543 34577788999998887541 111 334456898888888
Q ss_pred HH-HhcCceee
Q psy12516 236 AM-EFGISVFD 245 (327)
Q Consensus 236 a~-~~G~~~vd 245 (327)
.+ ++|++.+.
T Consensus 152 ~Lk~aGl~~l~ 162 (350)
T PRK05927 152 RLWDAGQRTIP 162 (350)
T ss_pred HHHHcCcccCC
Confidence 77 58886443
|
|
| >PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.95 E-value=59 Score=31.94 Aligned_cols=87 Identities=14% Similarity=0.187 Sum_probs=48.4
Q ss_pred HHHHHHhhhhhcccCcchhhh-hhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc--CCeEEEEEeeeccCCCCCCCCh
Q psy12516 94 EDLVYMLEGKSMQCGVKEIAV-FASASEMFSKRNINCTIEESLERFSEVVSTALTN--GIRVRGYISCVVGCPYEGAVPP 170 (327)
Q Consensus 94 e~v~~~l~~~~~~~Gid~i~l-~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~--Gi~v~~~l~~~~g~~~~~r~~~ 170 (327)
++++..+... ..++..+++ +.+.|+...+. .++. ...+.+.+.++.+++. |+.+...++ +|.|.+ +.
T Consensus 246 ~ell~~l~~~--~~~~~~l~iglQSgsd~vLk~-M~R~--~t~e~~~~~v~~lr~~~~~i~i~~d~I--vG~PgE---T~ 315 (446)
T PRK14337 246 PEVIEAFGEL--PNLCPRLHLPLQSGSDRILKA-MGRK--YDMARYLDIVTDLRAARPDIALTTDLI--VGFPGE---TE 315 (446)
T ss_pred HHHHHHHHhC--CcccCeEEECCCCCCHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCCCeEEEeEE--EECCCC---CH
Confidence 5566655432 223444444 23445443332 2221 1134566677777776 565555444 566654 57
Q ss_pred HHHHHHHHHHHHcCcCEEEe
Q psy12516 171 HNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l 190 (327)
+.+.+..+.+.+.+.+.+.+
T Consensus 316 ed~~~tl~~l~~~~~~~~~~ 335 (446)
T PRK14337 316 EDFEQTLEAMRTVGFASSFS 335 (446)
T ss_pred HHHHHHHHHHHhcCCCeeEE
Confidence 78888888888888875544
|
|
| >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) | Back alignment and domain information |
|---|
Probab=80.93 E-value=22 Score=28.66 Aligned_cols=98 Identities=15% Similarity=0.167 Sum_probs=58.3
Q ss_pred HHHHHH--HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHH
Q psy12516 59 NILTAM--EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLE 136 (327)
Q Consensus 59 ~~~~a~--~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~ 136 (327)
|+++.+ .+|..++|.++ +.++|+++... .+.+.|.+.+..-... ...
T Consensus 17 niv~~~L~~~GfeVidLG~--------------~v~~e~~v~aa----~~~~adiVglS~L~t~-------------~~~ 65 (128)
T cd02072 17 KILDHAFTEAGFNVVNLGV--------------LSPQEEFIDAA----IETDADAILVSSLYGH-------------GEI 65 (128)
T ss_pred HHHHHHHHHCCCEEEECCC--------------CCCHHHHHHHH----HHcCCCEEEEeccccC-------------CHH
Confidence 444444 58888888322 35778877643 4556666544311111 145
Q ss_pred HHHHHHHHHHHcCC-eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCC
Q psy12516 137 RFSEVVSTALTNGI-RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDT 193 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi-~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt 193 (327)
.++++++..++.|+ .+-+.+... + ..+++...+..+.+.++|++++.=+.|
T Consensus 66 ~~~~~~~~l~~~gl~~v~vivGG~---~---~i~~~d~~~~~~~L~~~Gv~~vf~pgt 117 (128)
T cd02072 66 DCKGLREKCDEAGLKDILLYVGGN---L---VVGKQDFEDVEKRFKEMGFDRVFAPGT 117 (128)
T ss_pred HHHHHHHHHHHCCCCCCeEEEECC---C---CCChhhhHHHHHHHHHcCCCEEECcCC
Confidence 56777888888887 433322221 1 135566666677889999999886665
|
Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains. |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=80.86 E-value=37 Score=29.53 Aligned_cols=95 Identities=14% Similarity=0.099 Sum_probs=51.4
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCe
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADR 217 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~ 217 (327)
+.++++.+++.|..+.+.+... .+.....-.+++..+.....+.|.+...+.- ...+.++.+++..+. +
T Consensus 95 l~~~i~~~~~~g~~~~v~~~~~--~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~--------~~~~~i~~l~~~~~~-~ 163 (215)
T PRK13813 95 LKAVVEAAAESGGKVFVVVEMS--HPGALEFIQPHADKLAKLAQEAGAFGVVAPA--------TRPERVRYIRSRLGD-E 163 (215)
T ss_pred HHHHHHHHHhcCCeEEEEEeCC--CCCCCCCHHHHHHHHHHHHHHhCCCeEEECC--------CcchhHHHHHHhcCC-C
Confidence 4556788888898876544321 1111111234566667777788877554221 112334556655543 1
Q ss_pred EEEeecCCcCcHHH--HHHHHHHhcCceeee
Q psy12516 218 LAVHCHDTYGQALA--NILTAMEFGISVFDS 246 (327)
Q Consensus 218 l~~H~Hn~~g~a~a--n~l~a~~~G~~~vd~ 246 (327)
+.+ =|.|.... |.-.++++|++.+-.
T Consensus 164 ~~i---vdgGI~~~g~~~~~~~~aGad~iV~ 191 (215)
T PRK13813 164 LKI---ISPGIGAQGGKAADAIKAGADYVIV 191 (215)
T ss_pred cEE---EeCCcCCCCCCHHHHHHcCCCEEEE
Confidence 111 22343333 477888999997643
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.86 E-value=46 Score=30.66 Aligned_cols=98 Identities=18% Similarity=0.186 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHHc-CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 133 ESLERFSEVVSTALTN-GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~-Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
|-++++.++++..++. ++.+.+ |. +. .++++.+.+.|++.|+ |..|...| ++.+. ++
T Consensus 73 eE~~Rv~pvI~~l~~~~~~~ISI---------DT--~~----~~va~~AL~~GadiIN--DI~g~~d~-~~~~~---~a- 130 (282)
T PRK11613 73 EELDRVIPVVEAIAQRFEVWISV---------DT--SK----PEVIRESAKAGAHIIN--DIRSLSEP-GALEA---AA- 130 (282)
T ss_pred HHHHHHHHHHHHHHhcCCCeEEE---------EC--CC----HHHHHHHHHcCCCEEE--ECCCCCCH-HHHHH---HH-
Confidence 3477788888777643 544321 11 22 3566777788999754 66676555 33333 33
Q ss_pred hcCCCeEEEeecCCcC-----------------cHHHHHHHHHHhcCc----eeeeccccCCC
Q psy12516 212 VIPADRLAVHCHDTYG-----------------QALANILTAMEFGIS----VFDSSIAGLGG 253 (327)
Q Consensus 212 ~~~~~~l~~H~Hn~~g-----------------~a~an~l~a~~~G~~----~vd~s~~G~G~ 253 (327)
++...-+-.|.+.+.. ......-.|..+|++ .+|-.+ |+|.
T Consensus 131 ~~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGi-GF~k 192 (282)
T PRK11613 131 ETGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGF-GFGK 192 (282)
T ss_pred HcCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCC-CcCC
Confidence 3332235556532111 112344457889996 579853 5554
|
|
| >PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed | Back alignment and domain information |
|---|
Probab=80.85 E-value=45 Score=31.12 Aligned_cols=123 Identities=17% Similarity=0.253 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc-CcCEEEecCCCCccCHHHHHHHHHHHHHh-cC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM-GCYEISLGDTIGVGTPGTMRLMLEDVLTV-IP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~-g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~~ 214 (327)
.+.+.++.+.+.|+.. +.++ -|-|. .. ..+.++++.+.+. |...+.+ .|.|.+.+. .+..+++. +.
T Consensus 53 ei~~~i~~~~~~gi~~-I~~t--GGEPl---l~-~~l~~li~~i~~~~~~~~i~i-tTNG~ll~~----~~~~L~~agl~ 120 (331)
T PRK00164 53 EIERLVRAFVALGVRK-VRLT--GGEPL---LR-KDLEDIIAALAALPGIRDLAL-TTNGYLLAR----RAAALKDAGLD 120 (331)
T ss_pred HHHHHHHHHHHCCCCE-EEEE--CCCCc---Cc-cCHHHHHHHHHhcCCCceEEE-EcCchhHHH----HHHHHHHcCCC
Confidence 3455566666667653 1222 13332 12 3456777777665 4455665 577876543 34445443 22
Q ss_pred CCeEEEeecCC-------cCcHHHHHHH----HHHhcCceeeeccccC-CCCCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 215 ADRLAVHCHDT-------YGQALANILT----AMEFGISVFDSSIAGL-GGCPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 215 ~~~l~~H~Hn~-------~g~a~an~l~----a~~~G~~~vd~s~~G~-G~~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
.+.|++|.-++ .+......+. +.++|...+......+ |. -.-.+++++..+++.|++
T Consensus 121 ~i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~~g~--------n~~ei~~l~~~~~~~gv~ 189 (331)
T PRK00164 121 RVNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLMKGV--------NDDEIPDLLEWAKDRGIQ 189 (331)
T ss_pred EEEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEECCC--------CHHHHHHHHHHHHhCCCe
Confidence 34566665332 1223334444 4455653232222112 21 113667777777777764
|
|
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=80.84 E-value=15 Score=33.81 Aligned_cols=66 Identities=18% Similarity=0.172 Sum_probs=48.2
Q ss_pred HHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 175 ~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
+-++.+.++|+|.|.+ .-++|+++.+.++.+++..+.+.+++- -|.-..|..+=...|+|.|-++-
T Consensus 200 eqa~ea~~agaDiI~L----Dn~~~e~l~~av~~~~~~~~~~~leaS----GGI~~~ni~~yA~tGvD~Is~ga 265 (284)
T PRK06096 200 KEAIAALRAQPDVLQL----DKFSPQQATEIAQIAPSLAPHCTLSLA----GGINLNTLKNYADCGIRLFITSA 265 (284)
T ss_pred HHHHHHHHcCCCEEEE----CCCCHHHHHHHHHHhhccCCCeEEEEE----CCCCHHHHHHHHhcCCCEEEECc
Confidence 3344566899999987 368999999999988755555555553 36667788888889999985543
|
|
| >cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain | Back alignment and domain information |
|---|
Probab=80.84 E-value=18 Score=28.58 Aligned_cols=104 Identities=13% Similarity=-0.004 Sum_probs=61.9
Q ss_pred HHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH-cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEE
Q psy12516 141 VVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK-MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA 219 (327)
Q Consensus 141 ~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~-~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~ 219 (327)
+..+.++.|..+.. .+.....+..+.+.+ ..+|.|.+.=+.... ..+.++++.+|+..|++++.
T Consensus 8 ~aa~l~~~g~~v~~-------------~~~~~~~~~~~~~~~~~~pdiv~~S~~~~~~--~~~~~~~~~ik~~~p~~~iv 72 (127)
T cd02068 8 LAAVLEDAGFIVAE-------------HDVLSADDIVEDIKELLKPDVVGISLMTSAI--YEALELAKIAKEVLPNVIVV 72 (127)
T ss_pred HHHHHHHCCCeeee-------------cCCCCHHHHHHHHHHhcCCCEEEEeeccccH--HHHHHHHHHHHHHCCCCEEE
Confidence 34567778876652 111122444555655 678999887554433 36888999999999887776
Q ss_pred EeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 220 VHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 220 ~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
+=.+. ++.+...... ...+|.-+.|-|| .++.+++..+.+
T Consensus 73 ~GG~~----~t~~p~~~~~--~~~~D~vv~GEgE----------~~~~~l~~~l~~ 112 (127)
T cd02068 73 VGGPH----ATFFPEEILE--EPGVDFVVIGEGE----------ETFLKLLEELEE 112 (127)
T ss_pred ECCcc----hhhCHHHHhc--CCCCCEEEECCcH----------HHHHHHHHHHHc
Confidence 62221 1112222111 2457777776666 677777777653
|
This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear. |
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=80.81 E-value=7.4 Score=35.71 Aligned_cols=18 Identities=39% Similarity=0.582 Sum_probs=9.3
Q ss_pred HHHhcCceeeeccccCCC
Q psy12516 236 AMEFGISVFDSSIAGLGG 253 (327)
Q Consensus 236 a~~~G~~~vd~s~~G~G~ 253 (327)
+.++|.+..-.-+.|+|+
T Consensus 167 l~~~Gi~v~~~~i~Gl~e 184 (296)
T TIGR00433 167 AKKAGLKVCSGGIFGLGE 184 (296)
T ss_pred HHHcCCEEEEeEEEeCCC
Confidence 345566543334566655
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=80.72 E-value=37 Score=30.60 Aligned_cols=145 Identities=14% Similarity=0.110 Sum_probs=82.5
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+++.|++.+.+...... .+..+.++.+..+.+.+++.|..+.+.+ ...|- ..+..+.+.+.+.++...+
T Consensus 98 ~al~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~liv~~-~~~Gv-h~~~~~~~~~~~~~~~a~~ 167 (258)
T TIGR01949 98 DAIRMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVPLLAMM-YPRGP-HIDDRDPELVAHAARLGAE 167 (258)
T ss_pred HHHHCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCCEEEEE-eccCc-ccccccHHHHHHHHHHHHH
Confidence 345677776654332111 1123346778888888999998865422 22221 1122455666666788889
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEee-cC--CcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHC-HD--TYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~-Hn--~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
.|+|.|... .. ..++. ++.+.+..+ +|+..=. -+ +...+..|.-.++++|++.+-.+-.=+
T Consensus 168 ~GADyikt~-~~--~~~~~----l~~~~~~~~-iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~-------- 231 (258)
T TIGR01949 168 LGADIVKTP-YT--GDIDS----FRDVVKGCP-APVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIF-------- 231 (258)
T ss_pred HCCCEEecc-CC--CCHHH----HHHHHHhCC-CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhh--------
Confidence 999999865 21 22333 444444333 3444322 22 466678899999999999665433212
Q ss_pred CCCCccHHHHHHHHHh
Q psy12516 260 ASGNVATEDLVYMLEG 275 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~ 275 (327)
...+..+.+..|++
T Consensus 232 --~~~dp~~~~~~l~~ 245 (258)
T TIGR01949 232 --QHDDPVGITKAVCK 245 (258)
T ss_pred --cCCCHHHHHHHHHH
Confidence 23445566655554
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=80.67 E-value=53 Score=31.16 Aligned_cols=58 Identities=19% Similarity=0.100 Sum_probs=34.8
Q ss_pred hHHHHHHHHHHHHHHHHc-CCeEEEEEeeeccCCC--CCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 131 IEESLERFSEVVSTALTN-GIRVRGYISCVVGCPY--EGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~-Gi~v~~~l~~~~g~~~--~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+...+...++++..++. |..+.+.+.. +..+ .+..+.++..++++.+.++|+|.|.+
T Consensus 183 lenR~r~~~eiv~aIR~~vG~d~~v~iRi--~~~D~~~~g~~~~e~~~i~~~Le~~G~d~i~v 243 (353)
T cd02930 183 FENRMRFPVEIVRAVRAAVGEDFIIIYRL--SMLDLVEGGSTWEEVVALAKALEAAGADILNT 243 (353)
T ss_pred HHHHhHHHHHHHHHHHHHcCCCceEEEEe--cccccCCCCCCHHHHHHHHHHHHHcCCCEEEe
Confidence 333345555566655553 4443322222 1111 12368888999999999999999887
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=80.66 E-value=47 Score=31.53 Aligned_cols=108 Identities=11% Similarity=-0.004 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEE-EeeeccCCCCC-----CCChHHHHHHHHHHHH--cCcCEEEecCCCC---------
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGY-ISCVVGCPYEG-----AVPPHNVTRVATALYK--MGCYEISLGDTIG--------- 195 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~-l~~~~g~~~~~-----r~~~e~l~~~~~~~~~--~g~~~i~l~Dt~G--------- 195 (327)
+.++.+.++.+.|++.|+.+..- +.+..+..... ..+|+.+...++.+.+ +|+|.+-+.=+..
T Consensus 140 ~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~ 219 (340)
T PRK12858 140 RKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDG 219 (340)
T ss_pred HHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhhhccCCeEEEeeCCCCccccccccc
Confidence 34677889999999999987543 24433222111 2578899999999995 9999877744421
Q ss_pred ---ccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHHHHHHhcC
Q psy12516 196 ---VGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 196 ---~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l~a~~~G~ 241 (327)
..+-.+..+.++.+.+..+- |+.+ =.--+...-......|+++|+
T Consensus 220 ~~~~~~~~~~~~~f~~~~~a~~~-P~vvlsgG~~~~~f~~~l~~A~~aGa 268 (340)
T PRK12858 220 FEEAYTQEEAFKLFREQSDATDL-PFIFLSAGVSPELFRRTLEFACEAGA 268 (340)
T ss_pred ccccccHHHHHHHHHHHHhhCCC-CEEEECCCCCHHHHHHHHHHHHHcCC
Confidence 11445556777777776553 4443 222233445666677889998
|
|
| >COG2100 Predicted Fe-S oxidoreductase [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.57 E-value=18 Score=33.90 Aligned_cols=75 Identities=15% Similarity=0.131 Sum_probs=47.9
Q ss_pred cccCcchhhhhhhh-hHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 105 MQCGVKEIAVFASA-SEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 105 ~~~Gid~i~l~~~~-sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
.+.|+|++.+.... .+-..+.-.|. ....++.+.++++++.+.|+.|-..---.+ -+++++..++.+-+.+.
T Consensus 211 eeAGLdRiNlSv~aLDpk~Ak~L~G~-~dYdv~kvle~aE~i~~a~idvlIaPv~lP------G~ND~E~~~iIe~A~~i 283 (414)
T COG2100 211 EEAGLDRINLSVDALDPKLAKMLAGR-KDYDVKKVLEVAEYIANAGIDVLIAPVWLP------GVNDDEMPKIIEWAREI 283 (414)
T ss_pred HHhCCceEEeecccCCHHHHHHhcCc-cccCHHHHHHHHHHHHhCCCCEEEeeeecC------CcChHHHHHHHHHHHHh
Confidence 45678888775433 33333333332 223477888899999999998764322222 36778888888888887
Q ss_pred CcC
Q psy12516 184 GCY 186 (327)
Q Consensus 184 g~~ 186 (327)
|+-
T Consensus 284 GaG 286 (414)
T COG2100 284 GAG 286 (414)
T ss_pred CCC
Confidence 753
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=80.54 E-value=37 Score=32.21 Aligned_cols=138 Identities=12% Similarity=0.002 Sum_probs=72.4
Q ss_pred hhcccCcchhhhhhh--------hhHHH--HHHhhcCChHHHHHHHHHHHHHHHHc-C----CeEEEEEeeeccCCC-CC
Q psy12516 103 KSMQCGVKEIAVFAS--------ASEMF--SKRNINCTIEESLERFSEVVSTALTN-G----IRVRGYISCVVGCPY-EG 166 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~--------~sd~~--~~~~l~~s~ee~i~~~~~~v~~a~~~-G----i~v~~~l~~~~g~~~-~~ 166 (327)
.+.++|.|.+.+-.. +|+.. +.-+++-+.+...+-+.++++..++. | ..+.+.+.... .++ .+
T Consensus 152 ~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~-~~~~~~ 230 (353)
T cd04735 152 RAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSP-EEPEEP 230 (353)
T ss_pred HHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECc-ccccCC
Confidence 456688888765432 23322 22234556676677777777766653 4 22222222111 111 22
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCC----ccCHHHHHHHHHHHHHhc-CCCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIG----VGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G----~~~P~~~~~~~~~~~~~~-~~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
-.+.++..++++.+.+.|+|.|.+.-..- ...+..-......+++.+ +.+||....--+ ....+..+++.|+
T Consensus 231 g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~---t~e~ae~~l~~ga 307 (353)
T cd04735 231 GIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSIN---TPDDALEALETGA 307 (353)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCC---CHHHHHHHHHcCC
Confidence 35678899999999999999988843110 011111233455566555 245555533211 2344556666665
Q ss_pred cee
Q psy12516 242 SVF 244 (327)
Q Consensus 242 ~~v 244 (327)
|.|
T Consensus 308 D~V 310 (353)
T cd04735 308 DLV 310 (353)
T ss_pred ChH
Confidence 543
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=80.53 E-value=49 Score=30.71 Aligned_cols=209 Identities=12% Similarity=0.135 Sum_probs=109.5
Q ss_pred HHHHHcCcCEEEe------------cCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHH--HHHHH-HcCCc
Q psy12516 5 SALYKMGCYEISL------------GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALAN--ILTAM-EFGIS 69 (327)
Q Consensus 5 ~~~~~~g~~~i~~------------~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~--~~~a~-~aG~~ 69 (327)
+.+.++|.+.+.+ +|. |.++..++...++.+.+..+ +|+..-.=+-+|..... .+..+ ++|+.
T Consensus 30 rl~e~aGf~ai~~sg~~~~as~lG~pD~-g~l~~~e~~~~~~~I~~~~~-lPv~aD~dtGyG~~~~v~r~V~~~~~aGaa 107 (294)
T TIGR02319 30 KVIQQAGFPAVHMTGSGTSASMLGLPDL-GFTSVSEQAINAKNIVLAVD-VPVIMDADAGYGNAMSVWRATREFERVGIV 107 (294)
T ss_pred HHHHHcCCCEEEecHHHHHHHHcCCCCc-CCCCHHHHHHHHHHHHhccC-CCEEEECCCCCCCcHHHHHHHHHHHHcCCe
Confidence 4455666665554 343 57777777777777777764 77777777777664442 13333 57776
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG 149 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G 149 (327)
-|..-=.-.-. +.|......+ .+.++..++++.+.+...+..
T Consensus 108 gi~IEDq~~pK------~cg~~~~k~l--------------------------------v~~ee~~~kI~Aa~~A~~~~d 149 (294)
T TIGR02319 108 GYHLEDQVNPK------RCGHLEGKRL--------------------------------ISTEEMTGKIEAAVEAREDED 149 (294)
T ss_pred EEEEECCCCcc------ccCCCCCccc--------------------------------cCHHHHHHHHHHHHHhccCCC
Confidence 54422110000 1111110000 112233444444433332222
Q ss_pred CeEEEEEeeeccCCCC-CCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeE--EEeecCCc
Q psy12516 150 IRVRGYISCVVGCPYE-GAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL--AVHCHDTY 226 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~-~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l--~~H~Hn~~ 226 (327)
+-+ +-. .|. .....++.++-++...++|+|.|.+. |.-+++++.++.+.+ +. |+ -+......
T Consensus 150 ~~I--~AR-----TDa~~~~g~deaI~Ra~aY~eAGAD~ifi~---~~~~~~ei~~~~~~~----~~-P~~~nv~~~~~~ 214 (294)
T TIGR02319 150 FTI--IAR-----TDARESFGLDEAIRRSREYVAAGADCIFLE---AMLDVEEMKRVRDEI----DA-PLLANMVEGGKT 214 (294)
T ss_pred eEE--EEE-----ecccccCCHHHHHHHHHHHHHhCCCEEEec---CCCCHHHHHHHHHhc----CC-CeeEEEEecCCC
Confidence 222 111 111 12345677777888889999999884 577888877666654 32 33 23222221
Q ss_pred CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q psy12516 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGI 278 (327)
Q Consensus 227 g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~ 278 (327)
. .-+.-..-+.|+++|-.....+ ++-...+.+.+..|++.|-
T Consensus 215 p--~~s~~eL~~lG~~~v~~~~~~~--------~aa~~a~~~~~~~l~~~G~ 256 (294)
T TIGR02319 215 P--WLTTKELESIGYNLAIYPLSGW--------MAAASVLRKLFTELREAGT 256 (294)
T ss_pred C--CCCHHHHHHcCCcEEEEcHHHH--------HHHHHHHHHHHHHHHHcCC
Confidence 1 1134455577999886655433 3456677777777776554
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=80.36 E-value=34 Score=31.72 Aligned_cols=78 Identities=13% Similarity=0.212 Sum_probs=55.3
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCC-----C------ccCHHHHHHHHHHHHHhcCCCeEEEeecC------CcCcHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTI-----G------VGTPGTMRLMLEDVLTVIPADRLAVHCHD------TYGQAL 230 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~-----G------~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn------~~g~a~ 230 (327)
-++..+.+.++++.++|+-.|.|-|.+ | +..+++....++..++...+.++.+=.-- .+--|+
T Consensus 90 G~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI 169 (292)
T PRK11320 90 GGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAI 169 (292)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHH
Confidence 488899999999999999999999987 2 34667777777777765433344433221 223456
Q ss_pred HHHHHHHHhcCceee
Q psy12516 231 ANILTAMEFGISVFD 245 (327)
Q Consensus 231 an~l~a~~~G~~~vd 245 (327)
.-+.+-.++|||.|=
T Consensus 170 ~Ra~aY~eAGAD~if 184 (292)
T PRK11320 170 ERAQAYVEAGADMIF 184 (292)
T ss_pred HHHHHHHHcCCCEEE
Confidence 777778899998753
|
|
| >PTZ00413 lipoate synthase; Provisional | Back alignment and domain information |
|---|
Probab=80.22 E-value=58 Score=31.41 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHc---CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTN---GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~---Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.++..++++.+++. |+.+...++.-.| =+.+++.++++.+.+.|+|.+.|
T Consensus 277 Ye~sLe~Lr~AKe~f~~gi~tcSGiIVGLG------ET~eEvie~m~dLrelGVDivtI 329 (398)
T PTZ00413 277 YRQSLKVLEHVKEFTNGAMLTKSSIMLGLG------ETEEEVRQTLRDLRTAGVSAVTL 329 (398)
T ss_pred HHHHHHHHHHHHHHhcCCceEeeeeEecCC------CCHHHHHHHHHHHHHcCCcEEee
Confidence 44556667777765 7776544443233 25678999999999999999866
|
|
| >cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases | Back alignment and domain information |
|---|
Probab=80.22 E-value=48 Score=30.45 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=104.0
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcCC-CeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~~-~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
+.++.+.+.|++.|.+.=|+| .+|.++-.++++.+.+..++ +++-.|.-.+..-++..+..|-++|++.+=+.-..
T Consensus 25 ~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~Gad~v~~~pP~ 104 (289)
T cd00951 25 AHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAGADGILLLPPY 104 (289)
T ss_pred HHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhCCCEEEECCCC
Confidence 356788899999999999885 55677777777766666543 55555443344444555555666777666432211
Q ss_pred CCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy12516 78 LGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYIS 157 (327)
Q Consensus 78 lg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~ 157 (327)
.- ..+.+.++ +-++.+.+ ..++.+..|-
T Consensus 105 y~----------~~~~~~i~--------------------------------------~~f~~v~~---~~~~pi~lYn- 132 (289)
T cd00951 105 LT----------EAPQEGLY--------------------------------------AHVEAVCK---STDLGVIVYN- 132 (289)
T ss_pred CC----------CCCHHHHH--------------------------------------HHHHHHHh---cCCCCEEEEe-
Confidence 10 11223222 22222222 2356665442
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
.+ ....+++.+.+++ +.-...+.++|+.| ...++.+++ +..++ .+.+-.-.+ ..-...+.++
T Consensus 133 ----~~-g~~l~~~~l~~L~----~~~pnivgiKds~~--d~~~~~~~~----~~~~~-~~~v~~G~~--~~d~~~~~~l 194 (289)
T cd00951 133 ----RA-NAVLTADSLARLA----ERCPNLVGFKDGVG--DIELMRRIV----AKLGD-RLLYLGGLP--TAEVFALAYL 194 (289)
T ss_pred ----CC-CCCCCHHHHHHHH----hcCCCEEEEEeCCC--CHHHHHHHH----HhcCC-CeEEEeCCC--cchHhHHHHH
Confidence 11 1246776666554 32357889999987 345544443 33343 344322210 0122346778
Q ss_pred HhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 238 EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 238 ~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
.+|++.. +. ..+|.-.|.++...+.
T Consensus 195 ~~Ga~G~---is----------~~~n~~P~~~~~l~~~ 219 (289)
T cd00951 195 AMGVPTY---SS----------AVFNFVPEIALAFYAA 219 (289)
T ss_pred HCCCCEE---Ee----------chhhhhHHHHHHHHHH
Confidence 8887643 22 3567777787777665
|
The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate. |
| >PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function | Back alignment and domain information |
|---|
Probab=80.10 E-value=13 Score=29.10 Aligned_cols=77 Identities=13% Similarity=0.177 Sum_probs=41.9
Q ss_pred HHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEe
Q psy12516 142 VSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVH 221 (327)
Q Consensus 142 v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H 221 (327)
++..++.|++..+++. |+.-.-..-...+..+.+.++|..-+.++=+.+..+++++..+...+.+ .|. |+-+|
T Consensus 20 ~~~la~~GfktVInlR-----pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~-Pvl~h 92 (110)
T PF04273_consen 20 LAQLAAQGFKTVINLR-----PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK-PVLAH 92 (110)
T ss_dssp HHHHHHCT--EEEE-S------TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT-SEEEE
T ss_pred HHHHHHCCCcEEEECC-----CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC-CEEEE
Confidence 4566778998765544 2211111113344567788999999999999999999999887666554 565 78777
Q ss_pred ecCC
Q psy12516 222 CHDT 225 (327)
Q Consensus 222 ~Hn~ 225 (327)
|...
T Consensus 93 C~sG 96 (110)
T PF04273_consen 93 CRSG 96 (110)
T ss_dssp -SCS
T ss_pred CCCC
Confidence 7653
|
; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B. |
| >cd03307 Mta_CmuA_like MtaA_CmuA_like family | Back alignment and domain information |
|---|
Probab=80.08 E-value=11 Score=35.39 Aligned_cols=68 Identities=15% Similarity=0.176 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHH----HHHHHhcCCCeEEEeecCCcCcHHHHHHHHH-HhcCcee
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGV---GTPGTMRLML----EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 244 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~----~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~-~~G~~~v 244 (327)
+.++++...++|+|.|.+.|+.+. ++|+...+++ +++.+.+...++.+|.+.+. .+.+..+ +.|++.+
T Consensus 173 ~~~~~~~~~eaGad~i~i~d~~a~~~~isp~~f~e~~~p~~k~i~~~i~~~~~ilh~cG~~----~~~l~~~~~~g~d~~ 248 (326)
T cd03307 173 CIEYAKAQLEAGADIITIADPTASPELISPEFYEEFALPYHKKIVKELHGCPTILHICGNT----TPILEYIAQCGFDGI 248 (326)
T ss_pred HHHHHHHHHHcCCCEEEecCCCccccccCHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCC----hhHHHHHHHcCCCee
Confidence 445556566789999999998763 3888888765 33333343246778876553 2234443 4577653
|
MtaA/CmuA, also MtsA, or methyltransferase 2 (MT2) MT2-A and MT2-M isozymes, are methylcobamide:Coenzyme M methyltransferases, which play a role in metabolic pathways of methane formation from various substrates, such as methylated amines and methanol. Coenzyme M, 2-mercaptoethylsulfonate or CoM, is methylated during methanogenesis in a reaction catalyzed by three proteins. A methyltransferase methylates the corrinoid cofactor, which is bound to a second polypeptide, a corrinoid protein. The methylated corrinoid protein then serves as a substrate for MT2-A and related enzymes, which methylate CoM. |
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=80.03 E-value=7.8 Score=35.84 Aligned_cols=69 Identities=12% Similarity=-0.005 Sum_probs=52.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
+-+.++.++|+|.|-+= .++|+++++.++.++...|.+.++.- -|....|+.+..+.|++.|.++.-..
T Consensus 210 ~ea~eal~~gaDiI~LD----nm~~e~vk~av~~~~~~~~~v~ieaS----GGI~~~ni~~yA~tGvD~Is~galt~ 278 (289)
T PRK07896 210 EQLDEVLAEGAELVLLD----NFPVWQTQEAVQRRDARAPTVLLESS----GGLTLDTAAAYAETGVDYLAVGALTH 278 (289)
T ss_pred HHHHHHHHcCCCEEEeC----CCCHHHHHHHHHHHhccCCCEEEEEE----CCCCHHHHHHHHhcCCCEEEeChhhc
Confidence 45777889999988776 46799999999988776665554443 35667788888899999999775433
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 327 | ||||
| 3mp4_A | 298 | Crystal Structure Of Human Lyase R41m Mutant Length | 2e-74 | ||
| 2cw6_A | 298 | Crystal Structure Of Human Hmg-Coa Lyase: Insights | 2e-74 | ||
| 2ftp_A | 302 | Crystal Structure Of Hydroxymethylglutaryl-Coa Lyas | 1e-68 | ||
| 1ydn_A | 295 | Crystal Structure Of The Hmg-Coa Lyase From Brucell | 2e-52 | ||
| 1ydo_A | 307 | Crystal Structure Of The Bacillis Subtilis Hmg-Coa | 4e-49 | ||
| 2nx9_A | 464 | Crystal Structure Of The Carboxyltransferase Domain | 1e-10 | ||
| 3eeg_A | 325 | Crystal Structure Of A 2-Isopropylmalate Synthase F | 6e-06 | ||
| 3rmj_A | 370 | Crystal Structure Of Truncated Alpha-Isopropylmalat | 1e-05 | ||
| 3ble_A | 337 | Crystal Structure Of The Catalytic Domain Of Licms | 2e-05 | ||
| 3ble_A | 337 | Crystal Structure Of The Catalytic Domain Of Licms | 2e-04 | ||
| 1rqe_A | 539 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 2e-05 | ||
| 1u5j_A | 539 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 3e-05 | ||
| 1s3h_A | 539 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 3e-05 | ||
| 3ivs_A | 423 | Homocitrate Synthase Lys4 Length = 423 | 6e-05 | ||
| 3ivs_A | 423 | Homocitrate Synthase Lys4 Length = 423 | 6e-05 | ||
| 3ivt_A | 423 | Homocitrate Synthase Lys4 Bound To 2-Og Length = 42 | 6e-05 | ||
| 2ztj_A | 382 | Crystal Structure Of Homocitrate Synthase From Ther | 2e-04 | ||
| 2ztj_A | 382 | Crystal Structure Of Homocitrate Synthase From Ther | 2e-04 | ||
| 3a9i_A | 376 | Crystal Structure Of Homocitrate Synthase From Ther | 2e-04 | ||
| 3a9i_A | 376 | Crystal Structure Of Homocitrate Synthase From Ther | 2e-04 | ||
| 3ewb_X | 293 | Crystal Structure Of N-Terminal Domain Of Putative | 2e-04 | ||
| 1rr2_A | 473 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 3e-04 | ||
| 1rqh_A | 472 | Propionibacterium Shermanii Transcarboxylase 5s Sub | 3e-04 |
| >pdb|3MP4|A Chain A, Crystal Structure Of Human Lyase R41m Mutant Length = 298 | Back alignment and structure |
|
| >pdb|2CW6|A Chain A, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into Catalysis And The Molecular Basis For Hydroxymethylglutaric Aciduria Length = 298 | Back alignment and structure |
|
| >pdb|2FTP|A Chain A, Crystal Structure Of Hydroxymethylglutaryl-Coa Lyase From Pseudomonas Aeruginosa Length = 302 | Back alignment and structure |
|
| >pdb|1YDN|A Chain A, Crystal Structure Of The Hmg-Coa Lyase From Brucella Melitensis, Northeast Structural Genomics Target Lr35. Length = 295 | Back alignment and structure |
|
| >pdb|1YDO|A Chain A, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase, Northeast Structural Genomics Target Sr181. Length = 307 | Back alignment and structure |
|
| >pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae Length = 464 | Back alignment and structure |
|
| >pdb|3EEG|A Chain A, Crystal Structure Of A 2-Isopropylmalate Synthase From Cytophaga Hutchinsonii Length = 325 | Back alignment and structure |
|
| >pdb|3RMJ|A Chain A, Crystal Structure Of Truncated Alpha-Isopropylmalate Synthase From Neisseria Meningitidis Length = 370 | Back alignment and structure |
|
| >pdb|3BLE|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In Complexed With Malonate Length = 337 | Back alignment and structure |
|
| >pdb|3BLE|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In Complexed With Malonate Length = 337 | Back alignment and structure |
|
| >pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit Bound To Oxaloacetate Length = 539 | Back alignment and structure |
|
| >pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit, Met186ile Length = 539 | Back alignment and structure |
|
| >pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit A59t Length = 539 | Back alignment and structure |
|
| >pdb|3IVS|A Chain A, Homocitrate Synthase Lys4 Length = 423 | Back alignment and structure |
|
| >pdb|3IVS|A Chain A, Homocitrate Synthase Lys4 Length = 423 | Back alignment and structure |
|
| >pdb|3IVT|A Chain A, Homocitrate Synthase Lys4 Bound To 2-Og Length = 423 | Back alignment and structure |
|
| >pdb|2ZTJ|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus Thermophilus Complexed With Alpha-Ketoglutarate Length = 382 | Back alignment and structure |
|
| >pdb|2ZTJ|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus Thermophilus Complexed With Alpha-Ketoglutarate Length = 382 | Back alignment and structure |
|
| >pdb|3A9I|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus Thermophilus Complexed With Lys Length = 376 | Back alignment and structure |
|
| >pdb|3A9I|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus Thermophilus Complexed With Lys Length = 376 | Back alignment and structure |
|
| >pdb|3EWB|X Chain X, Crystal Structure Of N-Terminal Domain Of Putative 2- Isopropylmalate Synthase From Listeria Monocytogenes Length = 293 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Length = 298 | Back alignment and structure |
|---|
Score = 362 bits (931), Expect = e-126
Identities = 124/207 (59%), Positives = 156/207 (75%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
+ G KE+ +F +ASE+F+K+NINC+IEES +RF ++ A + I VRGY+SC +GCPY
Sbjct: 90 VAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPY 149
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
EG + P V V Y MGCYEISLGDTIGVGTPG M+ ML V+ +P LAVHCHD
Sbjct: 150 EGKISPAKVAEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHD 209
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADL 284
TYGQALAN L A++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYMLEG+GI TG +L
Sbjct: 210 TYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNL 269
Query: 285 TSLLRTGHYICGKLKKPSNSKVAKALP 311
LL G++IC L + ++SKVA+A
Sbjct: 270 QKLLEAGNFICQALNRKTSSKVAQATC 296
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Length = 298 | Back alignment and structure |
|---|
Score = 199 bits (510), Expect = 1e-62
Identities = 75/109 (68%), Positives = 86/109 (78%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
+V Y MGCYEISLGDTIGVGTPG M+ ML V+ +P LAVHCHDTYGQALAN
Sbjct: 159 AEVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANT 218
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
L A++ G+SV DSS+AGLGGCPYA+GASGN+ATEDLVYMLEG + GV
Sbjct: 219 LMALQMGVSVVDSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGV 267
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Length = 307 | Back alignment and structure |
|---|
Score = 359 bits (925), Expect = e-125
Identities = 96/207 (46%), Positives = 131/207 (63%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
++ G+ E VF SASE +++NIN + ESL +V + A + R Y+S V GCPY
Sbjct: 91 LEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPY 150
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
E VP V R++ AL++ G E+SLGDTIG P + +LE +L PA+++A+H HD
Sbjct: 151 EKDVPIEQVIRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHD 210
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADL 284
T G ALAN++TA++ GI+VFD S GLGGCPYA G+SGN ATED+VYMLE M I+T L
Sbjct: 211 TRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIKTNVKL 270
Query: 285 TSLLRTGHYICGKLKKPSNSKVAKALP 311
LL +I K+ KP S+ +
Sbjct: 271 EKLLSAAKWIEEKMGKPLPSRNLQVFK 297
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Length = 307 | Back alignment and structure |
|---|
Score = 198 bits (507), Expect = 4e-62
Identities = 57/109 (52%), Positives = 80/109 (73%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
++++ AL++ G E+SLGDTIG P + +LE +L PA+++A+H HDT G ALAN+
Sbjct: 160 IRLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANM 219
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
+TA++ GI+VFD S GLGGCPYA G+SGN ATED+VYMLE ++ V
Sbjct: 220 VTALQMGITVFDGSAGGLGGCPYAPGSSGNAATEDIVYMLEQMDIKTNV 268
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Length = 302 | Back alignment and structure |
|---|
Score = 357 bits (920), Expect = e-124
Identities = 124/209 (59%), Positives = 160/209 (76%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
++ GVKE+AVFA+ASE FS+RNINC+I++SLERF V+ A + +RVRGYISCV+GCPY
Sbjct: 93 LESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPY 152
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
+G V P V VA L +MGCYE+SLGDTIGVGT G R ++E V + +P +RLA H HD
Sbjct: 153 DGDVDPRQVAWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHD 212
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADL 284
TYGQALANI ++ GI+VFDSS+AGLGGCPYA+GA+GNVA+ED++Y+L G+ I TG D+
Sbjct: 213 TYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGVDM 272
Query: 285 TSLLRTGHYICGKLKKPSNSKVAKALPVK 313
+L+ G IC L K + S+ AKAL K
Sbjct: 273 HALVDAGQRICAVLGKSNGSRAAKALLAK 301
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Length = 302 | Back alignment and structure |
|---|
Score = 197 bits (504), Expect = 1e-61
Identities = 67/109 (61%), Positives = 85/109 (77%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
VA L +MGCYE+SLGDTIGVGT G R ++E V + +P +RLA H HDTYGQALANI
Sbjct: 162 AWVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANI 221
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
++ GI+VFDSS+AGLGGCPYA+GA+GNVA+ED++Y+L G + GV
Sbjct: 222 YASLLEGIAVFDSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGV 270
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Length = 295 | Back alignment and structure |
|---|
Score = 348 bits (895), Expect = e-121
Identities = 105/206 (50%), Positives = 132/206 (64%), Gaps = 1/206 (0%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
EIAVF SASE FSK NINCTI ES+ER S V+ A+ +G+ +RGY+SCVV CPY
Sbjct: 89 AAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPY 148
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD 224
+G V P V V L+ +GC+E+SLGDTIG GTP T+ ML+ VL + PA LA H HD
Sbjct: 149 DGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHD 208
Query: 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADL 284
T G+AL NI ++E G+ VFD+S+ GLGGCP+A GA GNV T +V ML MG ETG DL
Sbjct: 209 TGGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFETGLDL 268
Query: 285 TSLLRTGHYICGKLKKPSNSKVAKAL 310
L G + L++ +
Sbjct: 269 DRLRSAGLFTQ-ALRQDKAALEHHHH 293
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Length = 295 | Back alignment and structure |
|---|
Score = 199 bits (509), Expect = 2e-62
Identities = 58/123 (47%), Positives = 77/123 (62%), Gaps = 5/123 (4%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
V L+ +GC+E+SLGDTIG GTP T+ ML+ VL + PA LA H HDT G+AL NI
Sbjct: 158 ASVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNI 217
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV-----KEIAVF 115
++E G+ VFD+S+ GLGGCP+A GA GNV T +V ML + G+ + +F
Sbjct: 218 RVSLEKGLRVFDASVGGLGGCPFAPGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSAGLF 277
Query: 116 ASA 118
A
Sbjct: 278 TQA 280
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Length = 345 | Back alignment and structure |
|---|
Score = 73.1 bits (180), Expect = 8e-15
Identities = 30/122 (24%), Positives = 53/122 (43%), Gaps = 7/122 (5%)
Query: 169 PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYG 227
P + + G I + D+ G + +R + V+ + ++ +H H
Sbjct: 147 PAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLS 206
Query: 228 QALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSL 287
+AN + A+E G D+S+AG+G GA GN E + + E +G G DL +L
Sbjct: 207 LGVANSIVAVEEGCDRVDASLAGMG-----AGA-GNAPLEVFIAVAERLGWNHGTDLYTL 260
Query: 288 LR 289
+
Sbjct: 261 MD 262
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Length = 345 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 26/124 (20%), Positives = 50/124 (40%), Gaps = 7/124 (5%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANI 60
+ + G I + D+ G + +R + V+ + ++ +H H +AN
Sbjct: 153 EQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANS 212
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120
+ A+E G D+S+AG+G GA GN E + + E G + +A +
Sbjct: 213 IVAVEEGCDRVDASLAGMG-----AGA-GNAPLEVFIAVAERLGWNHGTDLYTLMDAADD 266
Query: 121 MFSK 124
+
Sbjct: 267 IVRP 270
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} Length = 320 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 9e-14
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 60
+ D+ G TP ++ +L++V + H HD L N
Sbjct: 146 FLSKLKAIDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTHVP-VGFHGHDNLQLGLINS 204
Query: 61 LTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120
+TA++ GI D++I G+G RGA GN+ E L+ L K V V +
Sbjct: 205 ITAIDDGIDFIDATITGMG-----RGA-GNLKMELLLTYLN-KHHGLNVD-FNVLGNIIT 256
Query: 121 MFSK 124
F+
Sbjct: 257 TFTP 260
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} Length = 320 | Back alignment and structure |
|---|
Score = 69.3 bits (170), Expect = 1e-13
Identities = 29/120 (24%), Positives = 45/120 (37%), Gaps = 8/120 (6%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 234
+ D+ G TP ++ +L++V + H HD L N +
Sbjct: 147 LSKLKAIDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTHVP-VGFHGHDNLQLGLINSI 205
Query: 235 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYI 294
TA++ GI D++I G+G RGA GN+ E L+ L D L
Sbjct: 206 TAIDDGIDFIDATITGMG-----RGA-GNLKMELLLTYLNKHH-GLNVDFNVLGNIITTF 258
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* Length = 423 | Back alignment and structure |
|---|
Score = 68.0 bits (167), Expect = 6e-13
Identities = 44/190 (23%), Positives = 80/190 (42%), Gaps = 20/190 (10%)
Query: 106 QCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE 165
+ GV + V S+ K + + ++ +EV++ + GI VR S E
Sbjct: 121 ETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVR--FSS------E 172
Query: 166 GAV--PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCH 223
+ ++ + A+ K+G + + DT+G TP + ++ + V+ D + H H
Sbjct: 173 DSFRSDLVDLLSLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFH 231
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV---YMLEGMGIET 280
+ G A+AN A+E G + D+SI G+G R +G L+ Y+ + I
Sbjct: 232 NDTGMAIANAYCALEAGATHIDTSILGIG----ER--NGITPLGALLARMYVTDREYITH 285
Query: 281 GADLTSLLRT 290
L L
Sbjct: 286 KYKLNQLREL 295
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* Length = 423 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 8e-08
Identities = 27/96 (28%), Positives = 47/96 (48%), Gaps = 7/96 (7%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 61
+ A+ K+G + + DT+G TP + ++ + V+ D + H H+ G A+AN
Sbjct: 184 SLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAY 242
Query: 62 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 97
A+E G + D+SI G+G R +G L+
Sbjct: 243 CALEAGATHIDTSILGIG----ER--NGITPLGALL 272
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Length = 337 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-12
Identities = 42/190 (22%), Positives = 74/190 (38%), Gaps = 20/190 (10%)
Query: 107 CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEG 166
G K + + S ++ + T +E S V+ A+ +G+++ + E
Sbjct: 108 SGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKIN--VYL------ED 159
Query: 167 AVP-----PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVH 221
P V + L K I L DT+GV +P ++ ++ P H
Sbjct: 160 WSNGFRNSPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFH 219
Query: 222 CHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGM-GIET 280
H+ Y ++AN L A+ G+ +SI GLG R +GN E LV + +T
Sbjct: 220 GHNDYDLSVANSLQAIRAGVKGLHASINGLG----ER--AGNTPLEALVTTIHDKSNSKT 273
Query: 281 GADLTSLLRT 290
+ ++
Sbjct: 274 NINEIAITEA 283
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Length = 337 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 29/96 (30%), Positives = 43/96 (44%), Gaps = 6/96 (6%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 61
+ L K I L DT+GV +P ++ ++ P H H+ Y ++AN L
Sbjct: 173 SLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSL 232
Query: 62 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 97
A+ G+ +SI GLG R +GN E LV
Sbjct: 233 QAIRAGVKGLHASINGLG----ER--AGNTPLEALV 262
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Length = 539 | Back alignment and structure |
|---|
Score = 64.2 bits (157), Expect = 1e-11
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 27/144 (18%)
Query: 165 EGAV-----PPHNV---TRVATALYKMGCYEISLGDTIGVGTPGTMRLML----EDVLTV 212
+G + P H V ++A L MG I+L D + P ++ +
Sbjct: 161 QGTICYTISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQK 220
Query: 213 IPADRLAVHCHDTYGQALANILTAMEFGISVFD---SSIAGLGGCPYARGASGNVATEDL 269
+ +HCH T G +++ A+E G+ V D SS++ G TE +
Sbjct: 221 TQ---INLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGPGHN---------PTESV 268
Query: 270 VYMLEGMGIETGADLTSLLRTGHY 293
MLEG G T D L + +
Sbjct: 269 AEMLEGTGYTTNLDYDRLHKIRDH 292
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Length = 539 | Back alignment and structure |
|---|
Score = 52.3 bits (126), Expect = 1e-07
Identities = 28/116 (24%), Positives = 46/116 (39%), Gaps = 19/116 (16%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLML----EDVLTVIPADRLAVHCHDTYGQA 56
+K+A L MG I+L D + P ++ + + +HCH T G
Sbjct: 178 VKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQ---INLHCHSTTGVT 234
Query: 57 LANILTAMEFGISVFD---SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
+++ A+E G+ V D SS++ G TE + MLEG +
Sbjct: 235 EVSLMKAIEAGVDVVDTAISSMSLGPGHN---------PTESVAEMLEGTGYTTNL 281
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* Length = 382 | Back alignment and structure |
|---|
Score = 63.7 bits (156), Expect = 1e-11
Identities = 41/192 (21%), Positives = 72/192 (37%), Gaps = 22/192 (11%)
Query: 106 QCGVKEIAVFASASE-MFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
+ GV+ I + S+ + + I +E EV++ V S
Sbjct: 85 ETGVQGIDLLFGTSKYLRAP--HGRDIPRIIEEAKEVIAYIREAAPHVEVRFSA------ 136
Query: 165 EGAV--PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD-RLAVH 221
E ++ V A+ + L DT+GV TP + ++ +V V+ + H
Sbjct: 137 EDTFRSEEQDLLAVYEAV-APYVDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFH 195
Query: 222 CHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV---YMLEGMGI 278
H+ G A+AN A+E G + D++I G+G R +G + Y L+ +
Sbjct: 196 GHNDTGCAIANAYEAIEAGATHVDTTILGIG----ER--NGITPLGGFLARMYTLQPEYV 249
Query: 279 ETGADLTSLLRT 290
L L
Sbjct: 250 RRKYKLEMLPEL 261
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* Length = 382 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 1e-06
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 7/80 (8%)
Query: 19 DTIGVGTPGTMRLMLEDVLTVIPAD-RLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77
DT+GV TP + ++ +V V+ + H H+ G A+AN A+E G + D++I G
Sbjct: 165 DTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILG 224
Query: 78 LGGCPYARGASGNVATEDLV 97
+G R +G +
Sbjct: 225 IG----ER--NGITPLGGFL 238
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 2e-10
Identities = 26/131 (19%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 169 PPHNV---TRVATALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVIPADRLAVHC 222
+++ +A L + G + + + D G+ P ++ L D +P L +H
Sbjct: 256 TKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLP---LHIHT 312
Query: 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282
HDT G +A +L + G V D + + G + + LV G ++T
Sbjct: 313 HDTSGAGVAAMLACAQAGADVVDVAADSMSGM------TSQPSMGALVACTRGTPLDTEV 366
Query: 283 DLTSLLRTGHY 293
+ + Y
Sbjct: 367 PMERVFDYSEY 377
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 5e-07
Identities = 26/112 (23%), Positives = 44/112 (39%), Gaps = 12/112 (10%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVIPADRLAVHCHDTYGQAL 57
M +A L + G + + + D G+ P ++ L D +P L +H HDT G +
Sbjct: 264 MGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLP---LHIHTHDTSGAGV 320
Query: 58 ANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
A +L + G V D + + G + + LV G + V
Sbjct: 321 AAMLACAQAGADVVDVAADSMSGM------TSQPSMGALVACTRGTPLDTEV 366
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Length = 464 | Back alignment and structure |
|---|
Score = 59.9 bits (146), Expect = 3e-10
Identities = 45/143 (31%), Positives = 66/143 (46%), Gaps = 27/143 (18%)
Query: 165 EGAV-----PPHNV---TRVATALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVI 213
+G + P HN+ VA L ++G I+L D G+ TP + L+ + +
Sbjct: 144 QGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVD-V 202
Query: 214 PADRLAVHCHDTYGQALANILTAMEFGISVFD---SSIAGLGGCPYARGASGNVATEDLV 270
L +HCH T G A +L A+E G+ D SS++G G P ATE LV
Sbjct: 203 E---LHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGTYGHP---------ATESLV 250
Query: 271 YMLEGMGIETGADLTSLLRTGHY 293
L+G G +TG D+ L + Y
Sbjct: 251 ATLQGTGYDTGLDIAKLEQIAAY 273
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Length = 464 | Back alignment and structure |
|---|
Score = 48.3 bits (116), Expect = 2e-06
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 19/115 (16%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLM---LEDVLTVIPADRLAVHCHDTYGQAL 57
+ VA L ++G I+L D G+ TP + L+ + + L +HCH T G A
Sbjct: 161 VDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVD-VE---LHLHCHSTAGLAD 216
Query: 58 ANILTAMEFGISVFD---SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGV 109
+L A+E G+ D SS++G G P ATE LV L+G G+
Sbjct: 217 MTLLKAIEAGVDRVDTAISSMSGTYGHP---------ATESLVATLQGTGYDTGL 262
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Length = 370 | Back alignment and structure |
|---|
Score = 51.0 bits (123), Expect = 2e-07
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 13/123 (10%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALA 231
+ A+ + G I++ DT+G P +++ P + + HCH+ G A+A
Sbjct: 161 EICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVA 220
Query: 232 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML----EGMGIETGADLTSL 287
N L A++ G + ++ GLG R +GN + E++V L + G+ETG D T +
Sbjct: 221 NSLAALKGGARQVECTVNGLG----ER--AGNASVEEIVMALKVRHDLFGLETGIDTTQI 274
Query: 288 LRT 290
+ +
Sbjct: 275 VPS 277
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Length = 370 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 3e-05
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 9/86 (10%)
Query: 15 ISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALANILTAMEFGISVF 71
I++ DT+G P +++ P + + HCH+ G A+AN L A++ G
Sbjct: 174 INIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQV 233
Query: 72 DSSIAGLGGCPYARGASGNVATEDLV 97
+ ++ GLG R +GN + E++V
Sbjct: 234 ECTVNGLG----ER--AGNASVEEIV 253
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Length = 325 | Back alignment and structure |
|---|
Score = 50.6 bits (122), Expect = 2e-07
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 13/110 (11%)
Query: 188 ISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALANILTAMEFGISVF 244
+++ DT G P ++ ++ + D+ L+ HCH+ G A AN L A++ G
Sbjct: 168 VNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQV 227
Query: 245 DSSIAGLGGCPYARGASGNVATEDLVYML----EGMGIETGADLTSLLRT 290
+ +I G+G R +GN A E++V + E +G+ETG + L+
Sbjct: 228 ECTINGIG----ER--AGNTALEEVVMAMECHKETLGLETGINHKKLVPI 271
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Length = 325 | Back alignment and structure |
|---|
Score = 43.6 bits (104), Expect = 4e-05
Identities = 25/86 (29%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 15 ISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALANILTAMEFGISVF 71
+++ DT G P ++ ++ + D+ L+ HCH+ G A AN L A++ G
Sbjct: 168 VNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQV 227
Query: 72 DSSIAGLGGCPYARGASGNVATEDLV 97
+ +I G+G R +GN A E++V
Sbjct: 228 ECTINGIG----ER--AGNTALEEVV 247
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Length = 293 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 3e-07
Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 13/123 (10%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALA 231
G I++ DT+G P + +D+ I D A HCHD G A A
Sbjct: 154 EAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATA 213
Query: 232 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML----EGMGIETGADLTSL 287
N L A+E G + +I G+G R +GN A E++ L + ET L
Sbjct: 214 NALAAIENGARRVEGTINGIG----ER--AGNTALEEVAVALHIRKDFYQAETNIVLNQF 267
Query: 288 LRT 290
+
Sbjct: 268 KNS 270
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Length = 293 | Back alignment and structure |
|---|
Score = 43.2 bits (103), Expect = 6e-05
Identities = 30/99 (30%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADR--LAVHCHDTYGQALA 58
+ G I++ DT+G P + +D+ I D A HCHD G A A
Sbjct: 154 EAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATA 213
Query: 59 NILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLV 97
N L A+E G + +I G+G R +GN A E++
Sbjct: 214 NALAAIENGARRVEGTINGIG----ER--AGNTALEEVA 246
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 1e-06
Identities = 32/119 (26%), Positives = 51/119 (42%), Gaps = 7/119 (5%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 234
+A L K G + I++ D G+ P + +L L + H HDT G A A +L
Sbjct: 713 NLAVELEKAGAHIIAVKDMAGLLKPAAAK-VLFKALREATGLPIHFHTHDTSGIAAATVL 771
Query: 235 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHY 293
A+E G+ D+++ L G ++ G +V L G + G D + R Y
Sbjct: 772 AAVEAGVDAVDAAMDALSGN-TSQPCLG-----SIVEALSGSERDPGLDPAWIRRISFY 824
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150 | Back alignment and structure |
|---|
Score = 48.1 bits (115), Expect = 3e-06
Identities = 25/119 (21%), Positives = 52/119 (43%), Gaps = 7/119 (5%)
Query: 175 RVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 234
++A L + G + +++ D G+ P ++ L + +H HDT G L
Sbjct: 696 KLAKELEREGFHILAIKDMAGLLKPKAAYELIG-ELKSAVDLPIHLHTHDTSGNGLLTYK 754
Query: 235 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHY 293
A++ G+ + D+++A + G ++ ++ + L Y L G D+ + HY
Sbjct: 755 QAIDAGVDIIDTAVASMSGL-TSQPSANS-----LYYALNGFPRHLRTDIEGMESLSHY 807
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A Length = 644 | Back alignment and structure |
|---|
Score = 42.5 bits (100), Expect = 1e-04
Identities = 22/106 (20%), Positives = 39/106 (36%), Gaps = 9/106 (8%)
Query: 188 ISLGDTIGVGTPGTMRLMLEDVLTVIPAD---RLAVHCHDTYGQALANILTAMEFGISVF 244
+L T+ + TP +E + + L++H H+ G A+A G
Sbjct: 249 FNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRI 308
Query: 245 DSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRT 290
+ + G G R GNV L L G++ D +++
Sbjct: 309 EGCLFGNG----ERT--GNVCLVTLGLNLFSRGVDPQIDFSNIDEI 348
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 327 | |||
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 100.0 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 100.0 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 100.0 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 100.0 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 100.0 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 100.0 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 100.0 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 100.0 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 100.0 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 100.0 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 100.0 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 100.0 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 100.0 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 100.0 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 100.0 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 100.0 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 100.0 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 100.0 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 99.94 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 99.93 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 99.93 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 99.91 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 99.91 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 99.91 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 99.91 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 99.89 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 99.89 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 99.89 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 99.88 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 99.87 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 99.85 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 99.84 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 99.84 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 99.83 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 99.83 | |
| 3hq1_A | 644 | 2-isopropylmalate synthase; LEUA, mycobacterium tu | 99.79 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 97.97 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 97.75 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 97.25 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 97.19 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 96.95 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 96.9 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 96.79 | |
| 2eja_A | 338 | URO-D, UPD, uroporphyrinogen decarboxylase; dimer, | 96.77 | |
| 3txv_A | 450 | Probable tagatose 6-phosphate kinase; structural g | 96.69 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 96.67 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 96.52 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 96.48 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 96.39 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 96.34 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 96.32 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 96.26 | |
| 4exq_A | 368 | UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid | 96.14 | |
| 1r3s_A | 367 | URO-D, uroporphyrinogen decarboxylase, UPD; uropor | 95.98 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 95.9 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 95.9 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 95.89 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 95.82 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 95.62 | |
| 1j93_A | 353 | UROD, uroporphyrinogen decarboxylase; beta barrel, | 94.94 | |
| 3lye_A | 307 | Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre | 94.9 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 94.84 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 94.82 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 94.67 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 94.55 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 94.46 | |
| 1vli_A | 385 | Spore coat polysaccharide biosynthesis protein SP; | 94.41 | |
| 3cyv_A | 354 | URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ | 94.39 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 94.37 | |
| 3fa4_A | 302 | 2,3-dimethylmalate lyase; alpha/beta barrel, helix | 94.33 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 94.21 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 94.16 | |
| 3elf_A | 349 | Fructose-bisphosphate aldolase; zinc enzyme, dihyd | 94.01 | |
| 4eiv_A | 297 | Deoxyribose-phosphate aldolase; chemotherapy, brai | 93.99 | |
| 1qwg_A | 251 | PSL synthase;, (2R)-phospho-3-sulfolactate synthas | 93.96 | |
| 4ay7_A | 348 | Methylcobalamin\: coenzyme M methyltransferase; TI | 93.87 | |
| 2inf_A | 359 | URO-D, UPD, uroporphyrinogen decarboxylase; (alpha | 93.69 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 93.57 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 93.56 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 93.53 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 93.44 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 93.39 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 93.24 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 93.2 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 93.15 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 93.13 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 93.05 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 92.97 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 92.96 | |
| 3pao_A | 326 | Adenosine deaminase; structural genomics, PSI-2, p | 92.96 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 92.88 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 92.8 | |
| 3qm3_A | 357 | Fructose-bisphosphate aldolase; structural genomic | 92.78 | |
| 1dos_A | 358 | Aldolase class II; lyase, classii fructose 1,6-bis | 92.72 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 92.71 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 92.63 | |
| 2a4a_A | 281 | Deoxyribose-phosphate aldolase; lyase, TIM beta/al | 92.54 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 92.52 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 92.43 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 92.4 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 92.39 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 92.38 | |
| 4dpp_A | 360 | DHDPS 2, dihydrodipicolinate synthase 2, chloropla | 92.2 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 92.02 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 92.0 | |
| 3dz1_A | 313 | Dihydrodipicolinate synthase; lysine biosynthesis, | 91.97 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 91.95 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 91.93 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 91.9 | |
| 1tv8_A | 340 | MOAA, molybdenum cofactor biosynthesis protein A; | 91.85 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 91.78 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 91.77 | |
| 3qfe_A | 318 | Putative dihydrodipicolinate synthase family PROT; | 91.77 | |
| 1u83_A | 276 | Phosphosulfolactate synthase; structural genomics, | 91.7 | |
| 3d0c_A | 314 | Dihydrodipicolinate synthase; lysine biosynthesis, | 91.62 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 91.52 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 91.31 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 91.24 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 91.22 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 91.18 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 91.16 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 91.05 | |
| 1p1x_A | 260 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 91.03 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 90.89 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 90.8 | |
| 3g8r_A | 350 | Probable spore coat polysaccharide biosynthesis P; | 90.7 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 90.65 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 90.6 | |
| 3h5d_A | 311 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 90.54 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 90.5 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 90.45 | |
| 2wkj_A | 303 | N-acetylneuraminate lyase; directed evolution, sia | 90.44 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 90.39 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 90.36 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 90.29 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 90.26 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 90.21 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 90.2 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 90.2 | |
| 3a5f_A | 291 | Dihydrodipicolinate synthase; TIM barrel, enzyme, | 90.18 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 90.18 | |
| 3rys_A | 343 | Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2 | 90.05 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 90.02 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 89.89 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 89.84 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 89.75 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 89.71 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 89.61 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 89.59 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 89.58 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 89.57 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 89.49 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 89.37 | |
| 2rfg_A | 297 | Dihydrodipicolinate synthase; beta barrel, amino-a | 89.35 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 89.27 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 89.21 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 89.14 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 88.83 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 88.79 | |
| 1lt8_A | 406 | Betaine-homocysteine methyltransferase; homocystei | 88.78 | |
| 3qxb_A | 316 | Putative xylose isomerase; structural genomics, jo | 88.74 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 88.67 | |
| 4gxw_A | 380 | Adenosine deaminase; amidohydrolase, COG1816, EFI, | 88.56 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 88.47 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 88.41 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 88.36 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 88.36 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 88.03 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 88.0 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 87.95 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 87.84 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 87.8 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 87.66 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 87.63 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 87.58 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 87.26 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 87.08 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 87.02 | |
| 1xky_A | 301 | Dihydrodipicolinate synthase; TIM barrel, , lysine | 86.94 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 86.85 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 86.66 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 86.64 | |
| 1oy0_A | 281 | Ketopantoate hydroxymethyltransferase; domain swap | 86.64 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 86.58 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 86.58 | |
| 2zvr_A | 290 | Uncharacterized protein TM_0416; hyperthermophIle, | 86.56 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 86.53 | |
| 3m5v_A | 301 | DHDPS, dihydrodipicolinate synthase; TIM barrel, c | 86.5 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 86.43 | |
| 3tak_A | 291 | DHDPS, dihydrodipicolinate synthase; TIM barrel, l | 86.42 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 86.31 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 86.27 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 86.25 | |
| 3u0h_A | 281 | Xylose isomerase domain protein; structural genomi | 86.22 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 86.18 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 86.08 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 85.97 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 85.87 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 85.83 | |
| 1o66_A | 275 | 3-methyl-2-oxobutanoate hydroxymethyltransferase; | 85.73 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 85.71 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 85.55 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 85.53 | |
| 3qc0_A | 275 | Sugar isomerase; TIM barrel, structural genomics, | 85.46 | |
| 3iar_A | 367 | Adenosine deaminase; purine metabolism structural | 85.42 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 85.39 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 85.38 | |
| 3sz8_A | 285 | 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci | 85.27 | |
| 3si9_A | 315 | DHDPS, dihydrodipicolinate synthase; structural ge | 85.23 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 85.03 | |
| 2qiw_A | 255 | PEP phosphonomutase; structural genomics, joint ce | 84.97 | |
| 1f6k_A | 293 | N-acetylneuraminate lyase; beta barrel; 1.60A {Hae | 84.84 | |
| 2r8w_A | 332 | AGR_C_1641P; APC7498, dihydrodipicolinate synthase | 84.83 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 84.79 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 84.69 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 84.53 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 84.51 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 84.51 | |
| 2ojp_A | 292 | DHDPS, dihydrodipicolinate synthase; dimer, lysine | 84.45 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 84.3 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 84.25 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 84.24 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 84.18 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 84.17 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 84.09 | |
| 3cpr_A | 304 | Dihydrodipicolinate synthetase; (beta/alpha)8-barr | 83.98 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 83.96 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 83.88 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 83.78 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 83.75 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 83.72 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 83.65 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 83.64 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 83.46 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 83.42 | |
| 3fkr_A | 309 | L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f | 83.41 | |
| 3aam_A | 270 | Endonuclease IV, endoiv; DNA repair, base excision | 83.37 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 83.33 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 83.14 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 83.12 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 82.84 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 82.83 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 82.78 | |
| 1zlp_A | 318 | PSR132, petal death protein; TIM-barrel, helix swa | 82.78 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 82.53 | |
| 3s5o_A | 307 | 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; | 82.34 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 82.34 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 82.31 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 82.29 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 82.25 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 82.12 | |
| 2hmc_A | 344 | AGR_L_411P, dihydrodipicolinate synthase; alpha-be | 82.04 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 81.96 | |
| 2y7e_A | 282 | 3-keto-5-aminohexanoate cleavage enzyme; lyase, al | 81.8 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 81.74 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 81.7 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 81.44 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 81.35 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 81.29 | |
| 2yxg_A | 289 | DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b | 81.14 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 81.05 | |
| 4ay7_A | 348 | Methylcobalamin\: coenzyme M methyltransferase; TI | 80.95 | |
| 3l21_A | 304 | DHDPS, dihydrodipicolinate synthase; DAPA, dimer, | 80.58 | |
| 3m6y_A | 275 | 4-hydroxy-2-oxoglutarate aldolase; structural geno | 80.39 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 80.37 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 80.26 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 80.09 |
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-50 Score=374.93 Aligned_cols=207 Identities=46% Similarity=0.782 Sum_probs=200.8
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++++|++.++++.+.|+.|.+.+++++++|+++++.+.++++++.|++|.+++++.|+|||+++++++++.++++++.+
T Consensus 89 ~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (307)
T 1ydo_A 89 NALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFE 168 (307)
T ss_dssp HHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHh
Confidence 45668999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++||||||||+||+|
T Consensus 169 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~a~graG 248 (307)
T 1ydo_A 169 FGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCPYAPGSSG 248 (307)
T ss_dssp HTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETTEEEEEC
T ss_pred cCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEEcccccCCCCCCCCCCC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCChhhhhc
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (327)
|++||+++.+|+.+|+++++|+++|.++++++++.+++++|+++.+.
T Consensus 249 N~~~E~lv~~L~~~g~~t~idl~~L~~~~~~v~~~~~~~~~~~~~~~ 295 (307)
T 1ydo_A 249 NAATEDIVYMLEQMDIKTNVKLEKLLSAAKWIEEKMGKPLPSRNLQV 295 (307)
T ss_dssp BCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHTSCCCCHHHHH
T ss_pred ChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhHHH
Confidence 99999999999999999999999999999999999999999876654
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-49 Score=373.84 Aligned_cols=286 Identities=20% Similarity=0.274 Sum_probs=226.9
Q ss_pred CEEEecCCc---cccCH------HHHHHHHHHHHhh-cCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCC
Q psy12516 13 YEISLGDTI---GVGTP------GTMRLMLEDVLTV-IPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCP 82 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p------~~~~~~~~~~~~~-~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p 82 (327)
+.|.|.||+ |.|+| .+..++.+.+.+. ++.++++|=. +..+-...+..+..... ++.+..+..
T Consensus 11 ~~v~I~DtTLRDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~---~~~~d~e~v~~i~~~~~--~~~i~~l~r-- 83 (370)
T 3rmj_A 11 NRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAA---ASPGDFEAVNAIAKTIT--KSTVCSLSR-- 83 (370)
T ss_dssp CBCEEEECCCCCCTTSTTCCCCHHHHHHHHHHHHHHTCSEEEEEEGG---GCHHHHHHHHHHHTTCS--SSEEEEEEE--
T ss_pred CCEEEEECCCCccccCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCC---CCHHHHHHHHHHHHhCC--CCeEEEEec--
Confidence 578899998 65554 4455555555543 2225555411 12222223333322221 122223321
Q ss_pred CCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC
Q psy12516 83 YARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGC 162 (327)
Q Consensus 83 ~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~ 162 (327)
...+++-..+ +....+|++.+++|.+.|+.|.+.+++++++|+++.+.+.++++++.|.+|. |+|
T Consensus 84 --------~~~~di~~a~-~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------~~~ 148 (370)
T 3rmj_A 84 --------AIERDIRQAG-EAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVE------FSC 148 (370)
T ss_dssp --------SSHHHHHHHH-HHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEE------EEE
T ss_pred --------CCHHHHHHHH-HHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE------Eec
Confidence 1244443222 2345589999999999999999999999999999999999999999999875 668
Q ss_pred CCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 163 PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 163 ~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
||.++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++.+|+ ++|++|+|||+|||+||+++|+++
T Consensus 149 ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~a 228 (370)
T 3rmj_A 149 EDALRSEIDFLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKG 228 (370)
T ss_dssp ETGGGSCHHHHHHHHHHHHHHTCCEEEEECSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHT
T ss_pred CCCCccCHHHHHHHHHHHHHcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHh
Confidence 88899999999999999999999999999999999999999999999999986 799999999999999999999999
Q ss_pred cCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhcccc
Q psy12516 240 GISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG----MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPV 312 (327)
Q Consensus 240 G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~----~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~ 312 (327)
||++||+|++|+|| |+||++||+++++|+. +|+++++|+++|.++++++++++|+++| |+||+++|+
T Consensus 229 Ga~~vd~tv~GlGe------raGN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~p~vG~~aF~ 302 (370)
T 3rmj_A 229 GARQVECTVNGLGE------RAGNASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFS 302 (370)
T ss_dssp TCCEEEEBGGGCSS------TTCBCBHHHHHHHHHHTHHHHCCBCCCCGGGHHHHHHHHHHHHTCCCCSSCTTTSTTTTC
T ss_pred CCCEEEEeccccCc------ccccccHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhHHH
Confidence 99999999999999 9999999999999974 5999999999999999999999999987 489999999
Q ss_pred ccc-------ccCccCccCCC
Q psy12516 313 KET-------SKTLESYANFD 326 (327)
Q Consensus 313 ~~~-------~~~~~~y~~~~ 326 (327)
|++ +|||.+|||||
T Consensus 303 h~sGiH~d~i~k~~~~Ye~~~ 323 (370)
T 3rmj_A 303 HESGIHQDGVLKHRETYEIMS 323 (370)
T ss_dssp --------------CCSCCCC
T ss_pred hcccccHHHHHhCchhccccC
Confidence 997 99999999997
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-50 Score=372.40 Aligned_cols=210 Identities=23% Similarity=0.325 Sum_probs=173.1
Q ss_pred cccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 105 ~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
...|++.+++|.+.|+.|.+.+++++++|.++++.++++++++.|++|. |+|||.++++++++.++++++.++|
T Consensus 91 ~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------f~~~d~~~~~~~~~~~~~~~~~~~G 164 (325)
T 3eeg_A 91 RFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVE------FFCEDAGRADQAFLARMVEAVIEAG 164 (325)
T ss_dssp TTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEE------EEEETGGGSCHHHHHHHHHHHHHHT
T ss_pred cccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE------EEccccccchHHHHHHHHHHHHhcC
Confidence 3448999999999999999999999999999999999999999999975 6788999999999999999999999
Q ss_pred cCEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCC
Q psy12516 185 CYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS 261 (327)
Q Consensus 185 ~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~ 261 (327)
+++|+|+||+|.++|.+++++++.+++.+|+ ++|++|+|||+|||+||+++|+++|+++||+|++|+|| |+
T Consensus 165 ~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~vd~tv~GlGe------r~ 238 (325)
T 3eeg_A 165 ADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECTINGIGE------RA 238 (325)
T ss_dssp CSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEBGGGCCS------TT
T ss_pred CCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc------cc
Confidence 9999999999999999999999999999986 79999999999999999999999999999999999999 99
Q ss_pred CCccHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 262 GNVATEDLVYMLEG----MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 262 Gn~~~e~~~~~l~~----~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
||++||+++.+|+. +|+++++|+++|.++++++++++|+++| |++|+++|+||+ +|||.+|||||
T Consensus 239 GN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~p~vG~~af~h~sGiH~~~~~k~~~~ye~~~ 317 (325)
T 3eeg_A 239 GNTALEEVVMAMECHKETLGLETGINHKKLVPISHLVSTLMRMQVQSNKAIVGRNAFAHSSGIHQDGFLKHRETYEIID 317 (325)
T ss_dssp CCCBHHHHHHHHHHTHHHHCEECCCCGGGHHHHHHHHHHHTTC------------------------------------
T ss_pred cchhHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhHHHHhccccHHHHhcChhhcCCCC
Confidence 99999999999984 6999999999999999999999999987 489999999997 99999999997
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-48 Score=359.93 Aligned_cols=207 Identities=60% Similarity=1.094 Sum_probs=200.8
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.+++++++|.++.+.+.++++++.|++|.+++++.|+|||+++++++++.++++.+.+
T Consensus 88 ~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (298)
T 2cw6_A 88 AAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYS 167 (298)
T ss_dssp HHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|+|||||++||+|
T Consensus 168 ~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp~a~g~aG 247 (298)
T 2cw6_A 168 MGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYAQGASG 247 (298)
T ss_dssp TTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCTTSCSSCC
T ss_pred cCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEeecccccCCCCCCCCcC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCChhhhhc
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (327)
|+++|+++.+|+.+|+++++|+++|.++++++++.+++++|+.+.+.
T Consensus 248 N~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~ 294 (298)
T 2cw6_A 248 NLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQA 294 (298)
T ss_dssp BCBHHHHHHHHHHHTCBCCCCHHHHHHHHHHHHHHTTCCCCCHHHHH
T ss_pred ChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhhhh
Confidence 99999999999999999999999999999999999999999876654
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-48 Score=365.49 Aligned_cols=215 Identities=20% Similarity=0.231 Sum_probs=200.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.+.++|++.++++.+.|+.|.+.+++++++|.++++.++++++++.|++|.+++++ |++.++++++++.++++++.+
T Consensus 104 ~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 180 (337)
T 3ble_A 104 WIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLED---WSNGFRNSPDYVKSLVEHLSK 180 (337)
T ss_dssp HHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEET---HHHHHHHCHHHHHHHHHHHHT
T ss_pred HHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE---CCCCCcCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999987765 455678999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+++|++|+|||+|||+||+++|+++|+++||+|++|+|| |+|
T Consensus 181 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG~------~aG 254 (337)
T 3ble_A 181 EHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASINGLGE------RAG 254 (337)
T ss_dssp SCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS------TTC
T ss_pred cCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEEEEecccccc------ccc
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHhC-CCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEGM-GIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~~-g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||+++.+|+.. |+++++|+++|.++++++++++++++| +++|+++|+||+ +|||.+|||||
T Consensus 255 N~~~E~lv~~L~~~~g~~tgidl~~L~~~~~~v~~~~~~~~~~~~~~vg~~~f~h~~GiH~~g~~k~~~~ye~~~ 329 (337)
T 3ble_A 255 NTPLEALVTTIHDKSNSKTNINEIAITEASRLVEVFSGKRISANRPIVGEDVFTQTAGVHADGDKKGNLYANPIL 329 (337)
T ss_dssp BCBHHHHHHHHHHHSSCCCCCCGGGHHHHHHHHHHHHCCCCCTTCTTTSTTTTCC------------CTTCCSCC
T ss_pred chhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCCCccchhhhhhheecccCcCceeCCccccCCCC
Confidence 99999999999985 999999999999999999999999987 479999999997 99999999997
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-48 Score=357.66 Aligned_cols=207 Identities=59% Similarity=1.028 Sum_probs=200.6
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++++|++.++++.+.|+.|.+.+++++++|++++++++++++|+.|++|++++++.|++|++++++++++.++++++.+
T Consensus 91 ~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~ 170 (302)
T 2ftp_A 91 AALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQ 170 (302)
T ss_dssp HHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHH
T ss_pred HHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
.|+|+|+|+||+|.++|.++.++++.+++.+|+++|++|+|||+|+|+||+++|+++|+++||+|++||||||||+||+|
T Consensus 171 ~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp~a~gr~G 250 (302)
T 2ftp_A 171 MGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYAKGATG 250 (302)
T ss_dssp TTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCGGGTTCBC
T ss_pred cCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCCCCCCCCC
Confidence 99999999999999999999999999999998889999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCChhhhhc
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKA 309 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~ 309 (327)
|++||+++.+|+++|+++++|+++|.++++++++.+++++|+++.+.
T Consensus 251 N~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~ 297 (302)
T 2ftp_A 251 NVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSNGSRAAKA 297 (302)
T ss_dssp BCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCCCCSCHHHHH
T ss_pred ChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCccchhh
Confidence 99999999999999999999999999999999999999999876643
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-45 Score=352.33 Aligned_cols=211 Identities=19% Similarity=0.241 Sum_probs=184.9
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++++|++.++++.++|+.|.+.+++++++|.++.+.+.++++++.|++|.+..+ +.++.+++++.++++++.+
T Consensus 118 ~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~e------da~r~d~~~~~~v~~~~~~ 191 (423)
T 3ivs_A 118 VAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSE------DSFRSDLVDLLSLYKAVDK 191 (423)
T ss_dssp HHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEE------SGGGSCHHHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEc------cCcCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999986544 4458999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
+|+++|+|+||+|.++|.+++++++.+++..+ ++|++|+|||+|||+||+++|+++|+++||+|++|+|| |+|
T Consensus 192 ~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~~~-~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~ti~GlGE------RaG 264 (423)
T 3ivs_A 192 IGVNRVGIADTVGCATPRQVYDLIRTLRGVVS-CDIECHFHNDTGMAIANAYCALEAGATHIDTSILGIGE------RNG 264 (423)
T ss_dssp HCCSEEEEEETTSCCCHHHHHHHHHHHHHHCS-SEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------TTC
T ss_pred hCCCccccCCccCcCCHHHHHHHHHHHHhhcC-CeEEEEECCCCchHHHHHHHHHHhCCCEEEEecccccC------ccc
Confidence 99999999999999999999999999998875 69999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHh---CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 263 NVATEDLVYMLEG---MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 263 n~~~e~~~~~l~~---~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|++||+++++|.. +++++++|++.|.++++++++++|+++| |+||+++|+|++ +|||.+|||||
T Consensus 265 Na~Le~vv~~L~~~~~~~~~~~idl~~L~~is~~v~~~~~~~v~~~kpivG~~aFah~sGiH~dgilk~~~tYe~~~ 341 (423)
T 3ivs_A 265 ITPLGALLARMYVTDREYITHKYKLNQLRELENLVADAVEVQIPFNNYITGMCAFTHKAGIHAKAILANPSTYEILK 341 (423)
T ss_dssp BCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHTTCCCCTTCTTTSTTTTEEECSGGGGGSSSCGGGCCSSC
T ss_pred chhHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhHhHHHhhcchhHHHHhCCccccCCcC
Confidence 9999999998864 3678999999999999999999999997 589999999996 99999999997
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=337.49 Aligned_cols=202 Identities=51% Similarity=0.857 Sum_probs=192.9
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
.++++|++.++++.+.|+.|.+.+++++.+|.+++++++++++++.|++|+++++++|+||++++++++++.++++.+.+
T Consensus 87 ~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~ 166 (295)
T 1ydn_A 87 AAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFS 166 (295)
T ss_dssp HHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHH
T ss_pred HHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
.|+|+|+|+||+|.++|.++.++++.+++.+|.++|++|+|||+|+|+||+++|+++|+++||+|++|+|||||++||+|
T Consensus 167 ~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~a~g~~G 246 (295)
T 1ydn_A 167 LGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGAKG 246 (295)
T ss_dssp HTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEEBTTCCSCBTTBTTSCC
T ss_pred cCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEEeccccCCCCCCCCCCcC
Confidence 99999999999999999999999999999998779999999999999999999999999999999999999999999999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCCh
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNS 304 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~ 304 (327)
|+++|+++.+|+++|+++++|+++|.+++++++++++...+.
T Consensus 247 N~~~e~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~~~~ 288 (295)
T 1ydn_A 247 NVDTVAVVEMLHEMGFETGLDLDRLRSAGLFTQALRQDKAAL 288 (295)
T ss_dssp BCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCC----
T ss_pred ChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCc
Confidence 999999999999999999999999999999999999988764
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-45 Score=345.87 Aligned_cols=210 Identities=19% Similarity=0.239 Sum_probs=188.1
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC--CeEEEEEeeeccCCCCCCCChHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG--IRVRGYISCVVGCPYEGAVPPHNVTRVATAL 180 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G--i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~ 180 (327)
.+.++|++.+++|.++|+.|.+ +++++++|+++++.+.++++++.| ++|.+++ ++.++++++++.++++++
T Consensus 82 ~a~~~g~~~v~i~~~~s~~~~~-~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~------ed~~~~~~~~~~~~~~~~ 154 (382)
T 2ztj_A 82 VAVETGVQGIDLLFGTSKYLRA-PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSA------EDTFRSEEQDLLAVYEAV 154 (382)
T ss_dssp HHHHTTCSEEEEEECC---------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEE------TTTTTSCHHHHHHHHHHH
T ss_pred HHHHcCCCEEEEEeccCHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEE------EeCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999 999999999999999999999999 8776443 445689999999999999
Q ss_pred HHcCcCEEEecCCCCccCHHHHHHHHHHHHHhc-CCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 181 YKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 181 ~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~-~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
.++ +++|+|+||+|.++|.+++++++.+++.+ ++++|++|+|||+|||+||+++|+++||++||+|++|+||
T Consensus 155 ~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGe------ 227 (382)
T 2ztj_A 155 APY-VDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGE------ 227 (382)
T ss_dssp GGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------
T ss_pred HHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEccccccc------
Confidence 999 99999999999999999999999999976 6789999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHh---CCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCccCccCCC
Q psy12516 260 ASGNVATEDLVYMLEG---MGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLESYANFD 326 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~---~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~~y~~~~ 326 (327)
|+||++||+++++|+. +|+++++|+++|.++++++++++++++| |++|.++|+||+ +|||++|||++
T Consensus 228 raGN~~lE~vv~~L~~~~~~g~~t~idl~~L~~~s~~v~~~~~~~~~~~~p~vG~~~f~h~sGiH~~g~~k~~~~Ye~~~ 307 (382)
T 2ztj_A 228 RNGITPLGGFLARMYTLQPEYVRRKYKLEMLPELDRMVARMVGVEIPFNNYITGETAFSHKAGMHLKAIYINPEAYEPYP 307 (382)
T ss_dssp TTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHHTCCCCTTCTTTSTTTTEECCHHHHHHHHHCGGGGCSSC
T ss_pred cccchhHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCcCCCcCCcchhheecccCCchhhcChhhhcccC
Confidence 9999999999999875 3578999999999999999999999987 579999999996 99999999986
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-43 Score=322.30 Aligned_cols=197 Identities=21% Similarity=0.241 Sum_probs=173.4
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYK 182 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~ 182 (327)
...++|++.++++.+.|+.|.+.|++++++|.++.+.++++++++.|.+|.. ++++.++++++++.++++++.+
T Consensus 88 ~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~------~~~d~~~~~~~~~~~~~~~~~~ 161 (293)
T 3ewb_X 88 ALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQF------SPEDATRSDRAFLIEAVQTAID 161 (293)
T ss_dssp HHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEE------EEETGGGSCHHHHHHHHHHHHH
T ss_pred HHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEE------EeccCCCCCHHHHHHHHHHHHH
Confidence 3445789999999999999999999999999999999999999999999874 3456679999999999999999
Q ss_pred cCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCC
Q psy12516 183 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 259 (327)
Q Consensus 183 ~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g 259 (327)
+|+++|+|+||+|.++|.+++++++.+++.+|+ ++|++|+|||+|||+||+++|+++|+++||+|++||||
T Consensus 162 ~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~GlGe------ 235 (293)
T 3ewb_X 162 AGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTINGIGE------ 235 (293)
T ss_dssp TTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCT------
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEEEeecccccc------
Confidence 999999999999999999999999999999985 67999999999999999999999999999999999999
Q ss_pred CCCCccHHHHHHHHHh----CCCCCCCChhhHHHHHHHHHHhcCCCCChhhhhccc
Q psy12516 260 ASGNVATEDLVYMLEG----MGIETGADLTSLLRTGHYICGKLKKPSNSKVAKALP 311 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~----~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 311 (327)
|+||++||+++.+|+. +|+++++|+++|.++++++++++|+++|+.-|...+
T Consensus 236 raGN~~~E~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~~~~~~ 291 (293)
T 3ewb_X 236 RAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLSGMPVPRNEGHHHH 291 (293)
T ss_dssp TTCBCBHHHHHHHHHHTHHHHCEEECCCGGGHHHHHHHHHHC--------------
T ss_pred ccccHhHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCcccc
Confidence 9999999999999985 799999999999999999999999999998776544
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=347.27 Aligned_cols=212 Identities=14% Similarity=0.086 Sum_probs=190.6
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
....++.+.+++|.++|+.|++.+++++++|+++.+.+.++++++.+.. +...+...|++++.+|++++++.++++.+.
T Consensus 157 al~~a~~~~Vhif~stSd~h~~~~l~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasrtd~dfl~ev~~aa~ 236 (644)
T 3hq1_A 157 ACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVG 236 (644)
T ss_dssp HHTTCSEEEEEEEEECCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGGSCHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCCCCHHHHHHHHHHHH
Confidence 3456788999999999999999999999999999999999877766432 111233346677888999999999999999
Q ss_pred Hc---CcC---EEEecCCCCccCHHHHHHHHHHHHHhcC---CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 182 KM---GCY---EISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 182 ~~---g~~---~i~l~Dt~G~~~P~~~~~~~~~~~~~~~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
++ |++ +|+|+||+|.++|.++++++..+++.+| .++|++|+|||+|||+||+++|+++||++||+|++|+|
T Consensus 237 eaG~~Gad~~~~I~LpDTvG~~tP~~~~~li~~l~~~v~~~~~v~l~vH~HND~GlAvANslaAv~AGA~~Vdgti~G~G 316 (644)
T 3hq1_A 237 EVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNG 316 (644)
T ss_dssp HHHCCCSSSCEEEEEEESSCCSCHHHHHHHHHHHHHHSTTGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCS
T ss_pred HhcCCCCCceeEEEecCCCcccCHHHHHHHHHHHHHhcccccCceEEEecCCCCCcHHHHHHHHHHhCCCEEEecCCCCC
Confidence 85 577 8999999999999999999999999987 47899999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhhhccccccc-------ccCcc
Q psy12516 253 GCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN---SKVAKALPVKET-------SKTLE 320 (327)
Q Consensus 253 ~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-------~~~~~ 320 (327)
| |+||++||+++++|+.+|+++++|+++|.++++++++++|+++| |+||+++|+|+| +|||.
T Consensus 317 E------RaGNa~LE~lv~~L~~~Gi~tgidl~~L~~is~~ve~~~g~~v~~~kpiVG~~aFah~SGiHqdailK~~~ 388 (644)
T 3hq1_A 317 E------RTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYGGDLVYTAFSGSHQDAINKGLD 388 (644)
T ss_dssp S------TTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHHHHHHHSCCCCTTCTTTSTTTTEECCHHHHHHHHHHHH
T ss_pred c------cccCccHHHHHHHHHhcccCCccCHHHHHHHHHHHHHHhCCCCCCCcccccccceeecccccHHHHhcCch
Confidence 9 99999999999999999999999999999999999999999987 589999999997 88873
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-38 Score=307.10 Aligned_cols=200 Identities=21% Similarity=0.317 Sum_probs=183.4
Q ss_pred cHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChH
Q psy12516 92 ATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPH 171 (327)
Q Consensus 92 ~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e 171 (327)
.+++++....+.+.++|++.+++|.++|+ ++++.+.++++++.|.++++++++.+ .++++++
T Consensus 114 ypddv~~~~ve~a~~aGvd~vrIf~s~sd--------------~~ni~~~i~~ak~~G~~v~~~i~~~~----~~~~~~e 175 (539)
T 1rqb_A 114 YNDEVVDRFVDKSAENGMDVFRVFDAMND--------------PRNMAHAMAAVKKAGKHAQGTICYTI----SPVHTVE 175 (539)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECCTTCC--------------THHHHHHHHHHHHTTCEEEEEEECCC----STTCCHH
T ss_pred CcccccHHHHHHHHhCCCCEEEEEEehhH--------------HHHHHHHHHHHHHCCCeEEEEEEeee----CCCCCHH
Confidence 35666666667788899999999999998 46788999999999999998887654 4578999
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCceeeecccc
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 250 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G 250 (327)
++.++++++.++|+++|+|+||+|.++|.+++++++.+++.+| +++|++|+|||+|+|+||+++|+++||++||+|++|
T Consensus 176 ~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~~VD~ti~g 255 (539)
T 1rqb_A 176 GYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISS 255 (539)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGG
T ss_pred HHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccc
Confidence 9999999999999999999999999999999999999999997 789999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCCh---h-hhhccccccc
Q psy12516 251 LGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNS---K-VAKALPVKET 315 (327)
Q Consensus 251 ~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~ 315 (327)
+|+ |+||++||+++.+|+.+|+++++|+++|.+++++++++.++..|. . ++.++|.|++
T Consensus 256 ~Ge------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~~~~~~~~~~~v~~he~ 318 (539)
T 1rqb_A 256 MSL------GPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLVDTSIFKSQI 318 (539)
T ss_dssp GCS------TTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCSCSCCCTHHHHCC
T ss_pred cCC------CccChhHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHhCCCcCCCCCccCCCceEEecC
Confidence 999 999999999999999999999999999999999999999997653 4 8888999883
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-39 Score=326.37 Aligned_cols=265 Identities=19% Similarity=0.250 Sum_probs=210.9
Q ss_pred CEEEecCCc---cccCH-------HHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCC
Q psy12516 13 YEISLGDTI---GVGTP-------GTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCP 82 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p-------~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p 82 (327)
+.|.|.||+ |.|++ .+...+.+.+.+... +++..+.+| ...||+++..++++|
T Consensus 101 ~~I~I~DTTLRDG~Qs~~~~r~~~edkl~Ia~~Ld~~Gv----g~~~IE~gG-------------Gatfd~~~~f~~e~p 163 (718)
T 3bg3_A 101 PGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFS----KLFSMENWG-------------GATFDVAMRFLYECP 163 (718)
T ss_dssp CSCEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHCT----TCSEEEEEE-------------TTHHHHHHHTSCCCH
T ss_pred CCeEEeecCCChhhCCCCCcCCCHHHHHHHHHHHHHhcC----CCcEEEecC-------------CcchhhccccCCCCH
Confidence 468999998 65555 344444444444311 222233332 244555577777777
Q ss_pred CCCCcc--------------------CC-CcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHH
Q psy12516 83 YARGAS--------------------GN-VATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEV 141 (327)
Q Consensus 83 ~~~~~~--------------------gn-~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~ 141 (327)
|++.+. |- ..+.+++...-+.+.++|+|.+++|.+.++ ++++++.
T Consensus 164 ~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~~~i~~a~~~Gvd~irIf~s~n~--------------l~~l~~~ 229 (718)
T 3bg3_A 164 WRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNY--------------LPNMLLG 229 (718)
T ss_dssp HHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHHTCCEEEEECSSCC--------------HHHHHHH
T ss_pred HHHHHHHHHHcccchHHHHhcccccccccccCCcchHHHHHHHHhcCcCEEEEEecHHH--------------HHHHHHH
Confidence 752211 10 123444444556778899999999988875 6788999
Q ss_pred HHHHHHcCCeEEEEEeee--ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEE
Q psy12516 142 VSTALTNGIRVRGYISCV--VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA 219 (327)
Q Consensus 142 v~~a~~~Gi~v~~~l~~~--~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~ 219 (327)
++++++.|.++.+++++. |.+|+.+.++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++.+|+++|+
T Consensus 230 i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~ 309 (718)
T 3bg3_A 230 MEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLH 309 (718)
T ss_dssp HHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEE
T ss_pred HHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEE
Confidence 999999999999999875 356665567999999999999999999999999999999999999999999999888999
Q ss_pred EeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcC
Q psy12516 220 VHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLK 299 (327)
Q Consensus 220 ~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~ 299 (327)
+|+|||+|||+||+++|+++||++||+|++|||| |+||++||+++.+|+.+|+++++|+++|.+++++++++.+
T Consensus 310 ~H~Hnd~GlAvANslaAveAGa~~VD~ti~GlGe------rtGN~~lE~vv~~L~~~g~~tgidl~~L~~~s~~v~~~~~ 383 (718)
T 3bg3_A 310 IHTHDTSGAGVAAMLACAQAGADVVDVAADSMSG------MTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARG 383 (718)
T ss_dssp EECCCTTSCHHHHHHHHHHTTCSEEEEBCGGGCS------TTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred EEECCCccHHHHHHHHHHHhCCCEEEecCccccc------ccCchhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999 9999999999999999999999999999999999999988
Q ss_pred CCCC-----hhhhh--cccccc
Q psy12516 300 KPSN-----SKVAK--ALPVKE 314 (327)
Q Consensus 300 ~~~~-----~~~~~--~~~~~~ 314 (327)
++.| +.+|. .++.||
T Consensus 384 ~~~~~~~~~~~~g~~~~v~~~e 405 (718)
T 3bg3_A 384 LYAAFDCTATMKSGNSDVYENE 405 (718)
T ss_dssp HTGGGCGGGTCCSCCTTHHHHC
T ss_pred CCcCCcCCccccccccceeecc
Confidence 8754 34554 456665
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-37 Score=295.30 Aligned_cols=187 Identities=25% Similarity=0.399 Sum_probs=172.6
Q ss_pred cHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChH
Q psy12516 92 ATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPH 171 (327)
Q Consensus 92 ~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e 171 (327)
..++++....+.+.++|+|.+++|.++|+ ++++.+.++++++.|.+|.+++++.++ .+++++
T Consensus 97 ~~ddv~~~~v~~a~~~Gvd~i~if~~~sd--------------~~ni~~~i~~ak~~G~~v~~~i~~~~~----~~~~~e 158 (464)
T 2nx9_A 97 YADDVVDTFVERAVKNGMDVFRVFDAMND--------------VRNMQQALQAVKKMGAHAQGTLCYTTS----PVHNLQ 158 (464)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEECCTTCC--------------THHHHHHHHHHHHTTCEEEEEEECCCC----TTCCHH
T ss_pred ccchhhHHHHHHHHhCCcCEEEEEEecCH--------------HHHHHHHHHHHHHCCCEEEEEEEeeeC----CCCCHH
Confidence 35667666667788999999999999998 467889999999999999988876544 468999
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccC
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 251 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~ 251 (327)
++.++++++.++|+++|+|+||+|.++|.+++++++.+++.+ +++|++|+|||+|+|+||+++|+++||++||+|++|+
T Consensus 159 ~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~g~ 237 (464)
T 2nx9_A 159 TWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSM 237 (464)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGG
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccc
Confidence 999999999999999999999999999999999999999998 5799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC
Q psy12516 252 GGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN 303 (327)
Q Consensus 252 G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~ 303 (327)
|+ |+||++||+++.+|+.+|+++++|+++|.+++++++++.+...|
T Consensus 238 ge------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~ 283 (464)
T 2nx9_A 238 SG------TYGHPATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRKKYHA 283 (464)
T ss_dssp CS------TTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHHHTGG
T ss_pred CC------CCcCHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHhhccc
Confidence 99 99999999999999999999999999999999999999888654
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-35 Score=275.16 Aligned_cols=172 Identities=22% Similarity=0.370 Sum_probs=155.3
Q ss_pred hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 104 ~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
+.++|+|.++++.+.++ .+.+.+.++++++.|+++.+++++ .++++++++.++++.+.++
T Consensus 102 a~~aGvd~v~I~~~~s~--------------~~~~~~~i~~ak~~G~~v~~~~~~------a~~~~~e~~~~ia~~~~~~ 161 (345)
T 1nvm_A 102 AYQAGARVVRVATHCTE--------------ADVSKQHIEYARNLGMDTVGFLMM------SHMIPAEKLAEQGKLMESY 161 (345)
T ss_dssp HHHHTCCEEEEEEETTC--------------GGGGHHHHHHHHHHTCEEEEEEES------TTSSCHHHHHHHHHHHHHH
T ss_pred HHhCCcCEEEEEEeccH--------------HHHHHHHHHHHHHCCCEEEEEEEe------CCCCCHHHHHHHHHHHHHC
Confidence 44567777777766665 245677899999999999887664 3478999999999999999
Q ss_pred CcCEEEecCCCCccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCC
Q psy12516 184 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG 262 (327)
Q Consensus 184 g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~G 262 (327)
|++.|+++||+|.++|.+++++++.+++.+| +++|++|+|||+|+|+||+++|+++|+++||+|++|+|| |+|
T Consensus 162 Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~tv~GlG~------~aG 235 (345)
T 1nvm_A 162 GATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGA------GAG 235 (345)
T ss_dssp TCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------TTC
T ss_pred CCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEEEecchhccC------Ccc
Confidence 9999999999999999999999999999996 789999999999999999999999999999999999999 999
Q ss_pred CccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHh-cCCC
Q psy12516 263 NVATEDLVYMLEGMGIETGADLTSLLRTGHYICGK-LKKP 301 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~-~~~~ 301 (327)
|++||+++.+|+++|+++++|+++|.++++++++. .+++
T Consensus 236 N~~le~lv~~L~~~g~~~~idl~~l~~~~~~~~~~~~~~~ 275 (345)
T 1nvm_A 236 NAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRP 275 (345)
T ss_dssp BCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGGGCSSC
T ss_pred CcCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999776 5554
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-36 Score=316.18 Aligned_cols=252 Identities=17% Similarity=0.242 Sum_probs=210.5
Q ss_pred CEEEecCCc---cccCHHH-------HHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCC
Q psy12516 13 YEISLGDTI---GVGTPGT-------MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCP 82 (327)
Q Consensus 13 ~~i~~~Dt~---G~~~p~~-------~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p 82 (327)
+.|.|.||+ |.|++.. ...+.+.+.+..+ ||+..+.| |++.||+++..++++|
T Consensus 531 ~~v~I~DtTlRDG~Qs~~~~r~~~~~kl~ia~~L~~~~~----G~~~lE~~-------------Gga~~e~~~~~~~e~~ 593 (1150)
T 3hbl_A 531 DDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFK----DGFSLEMW-------------GGATFDVAYNFLKENP 593 (1150)
T ss_dssp SSBEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHTT----TCSEEEEE-------------ETTHHHHHHHTSCCCH
T ss_pred CceEEEECccchhhccCCCcCCCHHHHHHHHHHHHHhhC----CCcEEeec-------------CCceEEecccccCCCH
Confidence 579999998 6666544 3333333333322 55566666 4688888888999999
Q ss_pred CCCCcc---------------C------CCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHH
Q psy12516 83 YARGAS---------------G------NVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEV 141 (327)
Q Consensus 83 ~~~~~~---------------g------n~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~ 141 (327)
|++.+. | ...+++++....+.+.++|+|.+++|.++|+.+ +.+..
T Consensus 594 ~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~~v~~a~~~Gvd~irif~~~sd~~--------------~~~~~ 659 (1150)
T 3hbl_A 594 WERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVD--------------QMKVA 659 (1150)
T ss_dssp HHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHHHHHHHHHTTCCEEEEECTTCCGG--------------GGHHH
T ss_pred HHHHHHHHHhCCCCeEEEEeccccccccccCCchhHHHHHHHHHhCCcCEEEEEeeCCHHH--------------HHHHH
Confidence 865531 1 134566666666778889999999999999954 44556
Q ss_pred HHHHHHcCCeEEEEEeee---ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeE
Q psy12516 142 VSTALTNGIRVRGYISCV---VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL 218 (327)
Q Consensus 142 v~~a~~~Gi~v~~~l~~~---~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l 218 (327)
++.+++.|..+.+.+++. +..++.++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++.+ +++|
T Consensus 660 ~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~~~~~lv~~l~~~~-~~~i 738 (1150)
T 3hbl_A 660 NEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPI 738 (1150)
T ss_dssp HHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-CSCE
T ss_pred HHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHHHHHHHHHHHHHhc-CCeE
Confidence 777888899999998886 544455689999999999999999999999999999999999999999999997 6799
Q ss_pred EEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhc
Q psy12516 219 AVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKL 298 (327)
Q Consensus 219 ~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~ 298 (327)
++|+|||+|||+||+++|+++||++||+|++|||| ++||++||+++.+|+.+|+++++|+++|.+++++++++.
T Consensus 739 ~~H~Hnt~G~a~An~laA~~aGa~~vD~ai~GlG~------~~gn~~lE~lv~~L~~~g~~tgidl~~l~~~~~~~~~~~ 812 (1150)
T 3hbl_A 739 HLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASMSG------LTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVR 812 (1150)
T ss_dssp EEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCS------BTSCCBHHHHHHHTTTSSCCBCSCHHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcHHHHHHHHHHHhCCCEEEEeccccCC------CCCCccHHHHHHHHHhcCCCcCccHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 999999999999999999999999999999999999987
Q ss_pred CCCC
Q psy12516 299 KKPS 302 (327)
Q Consensus 299 ~~~~ 302 (327)
+.-.
T Consensus 813 ~~y~ 816 (1150)
T 3hbl_A 813 TYYS 816 (1150)
T ss_dssp GGGG
T ss_pred hhhc
Confidence 7643
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=315.91 Aligned_cols=200 Identities=19% Similarity=0.247 Sum_probs=175.5
Q ss_pred HHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeee--ccCCCCCCCChH
Q psy12516 94 EDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCV--VGCPYEGAVPPH 171 (327)
Q Consensus 94 e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~--~g~~~~~r~~~e 171 (327)
.+++...-+.+.++|+|.+++|.+.++ ++++++.++++++.|.++.+++++. |.+|+.+.++++
T Consensus 644 ~~~~~~~i~~a~~~g~d~irif~sl~~--------------~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~ 709 (1165)
T 2qf7_A 644 DNVVKYFVRQAAKGGIDLFRVFDCLNW--------------VENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLK 709 (1165)
T ss_dssp HHHHHHHHHHHHHHTCCEEEEECTTCC--------------GGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHH
T ss_pred chhHHHHHHHHHhcCcCEEEEEeeHHH--------------HHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHH
Confidence 334444445677889999999988765 5678889999999999999988875 445554459999
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccC
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 251 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~ 251 (327)
++.++++++.++|+++|+|+||+|.++|.+++++++.+++.+ +++|++|+|||+|||+||+++|+++||++||+|++||
T Consensus 710 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~ti~Gl 788 (1165)
T 2qf7_A 710 YYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDAL 788 (1165)
T ss_dssp HHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGG
T ss_pred HHHHHHHHHHHcCCCEEEEeCccCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEEeccccc
Confidence 999999999999999999999999999999999999999999 5799999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCC---hhhh--hcccccc
Q psy12516 252 GGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSN---SKVA--KALPVKE 314 (327)
Q Consensus 252 G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~---~~~~--~~~~~~~ 314 (327)
|| |+||++||+++.+|+.+|+++++|+++|.+++++++++.+...| +.+| .+++.|+
T Consensus 789 Ge------~~Gn~~le~vv~~L~~~g~~tgidl~~L~~~s~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 850 (1165)
T 2qf7_A 789 SG------NTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPASEVYLHE 850 (1165)
T ss_dssp CS------BTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHGGGGGGCCCCCSCCTTHHHHC
T ss_pred CC------CccchhHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHhhhccCCCCCccCCccceEecc
Confidence 99 99999999999999999999999999999999999999887653 3455 3355555
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-32 Score=254.72 Aligned_cols=189 Identities=21% Similarity=0.218 Sum_probs=156.7
Q ss_pred HHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHH
Q psy12516 94 EDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNV 173 (327)
Q Consensus 94 e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l 173 (327)
+++..++.. ...|+|.++++....+ ++++.++++++++.|++|.+++++. +|+ .+++++
T Consensus 88 ~dv~~~~~a--~~~Gvd~~ri~~~~~n--------------le~~~~~v~~ak~~G~~v~~~~~~~--~~~---~~~~~~ 146 (320)
T 3dxi_A 88 EDLNHLLLP--IIGLVDMIRIAIDPQN--------------IDRAIVLAKAIKTMGFEVGFNVMYM--SKW---AEMNGF 146 (320)
T ss_dssp GGHHHHHGG--GTTTCSEEEEEECGGG--------------HHHHHHHHHHHHTTTCEEEEEECCT--TTG---GGSTTS
T ss_pred hhHHHHHHh--hhcCCCEEEEEecHHH--------------HHHHHHHHHHHHHCCCEEEEEEEeC--CCC---CCHHHH
Confidence 455444332 3489999998864432 7788899999999999999888762 332 133333
Q ss_pred HHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCC
Q psy12516 174 TRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 253 (327)
Q Consensus 174 ~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~ 253 (327)
...+.+ .+.|++.|+|+||+|.++|.+++++++.+++.++ ++|++|+|||+|+|+||+++|+++|+++||+|++||||
T Consensus 147 l~~~~~-~~~G~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~-~~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si~GlG~ 224 (320)
T 3dxi_A 147 LSKLKA-IDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTH-VPVGFHGHDNLQLGLINSITAIDDGIDFIDATITGMGR 224 (320)
T ss_dssp GGGGGG-GTTTCSEEEEECTTSCCCHHHHHHHHHHHHHHCC-SCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS
T ss_pred HHHHHH-hhCCCCEEEECcccCCCCHHHHHHHHHHHHHhCC-CeEEEEeCCCCccHHHHHHHHHHhCCCEEEEeccccCC
Confidence 333333 4679999999999999999999999999999997 69999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCChhhhhccccccc
Q psy12516 254 CPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNSKVAKALPVKET 315 (327)
Q Consensus 254 ~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (327)
++||++||+++.+|+. ++++++|++.|.+++++++++. ....+|.+.|.|++
T Consensus 225 ------~~GN~~~E~lv~~L~~-~~~~~~dl~~l~~~~~~~~~~~---~~~~~g~~~~~~~s 276 (320)
T 3dxi_A 225 ------GAGNLKMELLLTYLNK-HHGLNVDFNVLGNIITTFTPLL---EKYQWGTNLPYMLS 276 (320)
T ss_dssp ------TTCBCBHHHHHHHHHH-HSCCCCCHHHHHHHHHHHHHHH---HHHCCSCCHHHHHH
T ss_pred ------cccchhHHHHHHHHHh-ccCCCcCHHHHHHHHHHHHHHH---HhcCCCCchhhHHH
Confidence 8999999999999998 5678999999999999999875 23567888887775
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.4e-27 Score=217.94 Aligned_cols=114 Identities=51% Similarity=0.890 Sum_probs=109.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|+|+|+||+|.++|.+++++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++|||||
T Consensus 161 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGec 240 (307)
T 1ydo_A 161 RLSEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGC 240 (307)
T ss_dssp HHHHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEE
T ss_pred HHHHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEEcccccCCC
Confidence 67889999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||+++++||+++|+++.+|+.+++++|+|...+.
T Consensus 241 p~a~graGN~~~E~lv~~L~~~g~~t~idl~~L~ 274 (307)
T 1ydo_A 241 PYAPGSSGNAATEDIVYMLEQMDIKTNVKLEKLL 274 (307)
T ss_dssp TTEEEEECBCBHHHHHHHHHHTTCBCCCCHHHHH
T ss_pred CCCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999999999999999999999999877655
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=7.8e-26 Score=208.49 Aligned_cols=114 Identities=66% Similarity=1.112 Sum_probs=109.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|++.|+|+||+|.++|.+++++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++|+|||
T Consensus 160 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~c 239 (298)
T 2cw6_A 160 EVTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGC 239 (298)
T ss_dssp HHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCC
T ss_pred HHHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEeecccccCC
Confidence 67889999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||.++++||+++|+++.+|+.+++++|+|...+.
T Consensus 240 p~a~g~aGN~~~E~lv~~l~~~g~~~~idl~~l~ 273 (298)
T 2cw6_A 240 PYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLL 273 (298)
T ss_dssp TTSCSSCCBCBHHHHHHHHHHHTCBCCCCHHHHH
T ss_pred CCCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999999999999999999999999877654
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.1e-26 Score=208.69 Aligned_cols=114 Identities=60% Similarity=1.002 Sum_probs=108.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||.|.++|..+.++++.+++.+|++++++|+||++|++++|+++|+++|++.||+|++|||||
T Consensus 163 ~~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~c 242 (302)
T 2ftp_A 163 WVARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGC 242 (302)
T ss_dssp HHHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBC
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCC
Confidence 57788889999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||+++++||+++|+++.+|+.+++++|+|...+.
T Consensus 243 p~a~gr~GN~~~E~lv~~l~~~g~~~~idl~~l~ 276 (302)
T 2ftp_A 243 PYAKGATGNVASEDVLYLLNGLEIHTGVDMHALV 276 (302)
T ss_dssp GGGTTCBCBCBHHHHHHHHHHTTCBCCCCHHHHH
T ss_pred CCCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999999999999999999999999877654
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=4e-25 Score=206.73 Aligned_cols=158 Identities=25% Similarity=0.328 Sum_probs=118.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+|+||+|.++|.+++++++.+++.+|++++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 173 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG~- 251 (337)
T 3ble_A 173 SLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASINGLGE- 251 (337)
T ss_dssp HHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS-
T ss_pred HHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEEEEecccccc-
Confidence 6789999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhh-hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCeEEEEEe
Q psy12516 82 PYARGASGNVATEDLVYMLEGK-SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIRVRGYIS 157 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~-~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~v~~~l~ 157 (327)
++||+++|+++.+|+.+ ++++|+|...+. .+++.+.+. .+...+. -.+.+ .++++.|+|+.+.++
T Consensus 252 -----~aGN~~~E~lv~~L~~~~g~~tgidl~~L~-~~~~~v~~~-~~~~~~~----~~~~vg~~~f~h~~GiH~~g~~k 320 (337)
T 3ble_A 252 -----RAGNTPLEALVTTIHDKSNSKTNINEIAIT-EASRLVEVF-SGKRISA----NRPIVGEDVFTQTAGVHADGDKK 320 (337)
T ss_dssp -----TTCBCBHHHHHHHHHHHSSCCCCCCGGGHH-HHHHHHHHH-HCCCCCT----TCTTTSTTTTCC-----------
T ss_pred -----cccchhHHHHHHHHHHhcCCCCCcCHHHHH-HHHHHHHHH-HCCCCCC----CccchhhhhhheecccCcCceeC
Confidence 99999999999999988 999999988766 334433322 2222111 01122 357888999988877
Q ss_pred eeccCCCCCCCChHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~ 174 (327)
... +|+ .++|+.+.
T Consensus 321 ~~~--~ye-~~~P~~vG 334 (337)
T 3ble_A 321 GNL--YAN-PILPERFG 334 (337)
T ss_dssp -CT--TCC-SCCGGGGT
T ss_pred Ccc--ccC-CCChHHcC
Confidence 642 333 46776553
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-24 Score=198.08 Aligned_cols=114 Identities=49% Similarity=0.805 Sum_probs=108.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+|.|+++||.|.++|..+.++++.+++.+|.+++++|+||++|++++|+++|+++|++.||++++|+|||
T Consensus 159 ~~~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~sv~GlG~c 238 (295)
T 1ydn_A 159 SVTEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGC 238 (295)
T ss_dssp HHHHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEEBTTCCSCB
T ss_pred HHHHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEEeccccCCCC
Confidence 57788889999999999999999999999999999999987899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
||.++++||+++|+++.+|+++++++|+|...+.
T Consensus 239 p~a~g~~GN~~~e~lv~~l~~~g~~~~id~~~l~ 272 (295)
T 1ydn_A 239 PFAPGAKGNVDTVAVVEMLHEMGFETGLDLDRLR 272 (295)
T ss_dssp TTBTTSCCBCBHHHHHHHHHHTTCBCCCCHHHHH
T ss_pred CCCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHH
Confidence 9999999999999999999999999999877654
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.91 E-value=4.5e-24 Score=201.39 Aligned_cols=158 Identities=23% Similarity=0.429 Sum_probs=118.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++++.++|+++|+|+||+|.++|.+++++++.+++.+|. +++++|+|||+|+|++|+++|+++|+++||+|++||
T Consensus 161 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~Gl 240 (370)
T 3rmj_A 161 EICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTVNGL 240 (370)
T ss_dssp HHHHHHHHHTCCEEEEECSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGC
T ss_pred HHHHHHHHcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEEEEecccc
Confidence 67899999999999999999999999999999999999986 899999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhh----hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH---HHHHHcCCe
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEG----KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV---STALTNGIR 151 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~----~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v---~~a~~~Gi~ 151 (327)
|| ++||+++|+++.+|+. +++++|+|.-.+. .+++.+.+. .++..+ ..++++ .+++++|+|
T Consensus 241 Ge------raGN~~lE~vv~~L~~~~~~~g~~tgidl~~L~-~~s~~v~~~-~g~~~~----~~~p~vG~~aF~h~sGiH 308 (370)
T 3rmj_A 241 GE------RAGNASVEEIVMALKVRHDLFGLETGIDTTQIV-PSSKLVSTI-TGYPVQ----PNKAIVGANAFSHESGIH 308 (370)
T ss_dssp SS------TTCBCBHHHHHHHHHHTHHHHCCBCCCCGGGHH-HHHHHHHHH-HTCCCC----SSCTTTSTTTTC------
T ss_pred Cc------ccccccHHHHHHHHHhhhhccCCCCCcCHHHHH-HHHHHHHHH-hCCCCC----CCCCccchhHHHhccccc
Confidence 99 9999999999998864 5899999988765 344433322 232221 122333 368999999
Q ss_pred EEEEEeeeccCCCCCCCChHHHH
Q psy12516 152 VRGYISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 152 v~~~l~~~~g~~~~~r~~~e~l~ 174 (327)
+.+.+... ..|+ .++|+.+.
T Consensus 309 ~d~i~k~~--~~Ye-~~~P~~vG 328 (370)
T 3rmj_A 309 QDGVLKHR--ETYE-IMSAESVG 328 (370)
T ss_dssp ----------CCSC-CCCHHHHT
T ss_pred HHHHHhCc--hhcc-ccCHHHcC
Confidence 99988874 2344 57888877
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.1e-24 Score=199.48 Aligned_cols=146 Identities=23% Similarity=0.406 Sum_probs=107.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++++.++|+++|+|+||+|.++|.+++++++.+++.+|+ +++++|+|||+|++++|+++|+++|+++||+|++||
T Consensus 155 ~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~vd~tv~Gl 234 (325)
T 3eeg_A 155 RMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECTINGI 234 (325)
T ss_dssp HHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEBGGGC
T ss_pred HHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccc
Confidence 67899999999999999999999999999999999999986 899999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhh----hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHH---HHHHcCCe
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEG----KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVS---TALTNGIR 151 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~----~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~---~a~~~Gi~ 151 (327)
|| ++||+++|+++.+|+. +++++|+|.-.+. .+++.+.+ .+++. +...++++. +++++|+|
T Consensus 235 Ge------r~GN~~lE~vv~~L~~~~~~~g~~tgidl~~L~-~~s~~v~~-~~g~~----~~~~~p~vG~~af~h~sGiH 302 (325)
T 3eeg_A 235 GE------RAGNTALEEVVMAMECHKETLGLETGINHKKLV-PISHLVST-LMRMQ----VQSNKAIVGRNAFAHSSGIH 302 (325)
T ss_dssp CS------TTCCCBHHHHHHHHHHTHHHHCEECCCCGGGHH-HHHHHHHH-HTTC-------------------------
T ss_pred cc------cccchhHHHHHHHHHhhhhccCCCCCcCHHHHH-HHHHHHHH-HhCCC----CCCCCCccchhHHHHhcccc
Confidence 99 9999999999999984 6899999988766 34444332 23443 333455554 68999999
Q ss_pred EEEEEeee
Q psy12516 152 VRGYISCV 159 (327)
Q Consensus 152 v~~~l~~~ 159 (327)
+.+.+...
T Consensus 303 ~~~~~k~~ 310 (325)
T 3eeg_A 303 QDGFLKHR 310 (325)
T ss_dssp --------
T ss_pred HHHHhcCh
Confidence 99877753
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.4e-23 Score=202.71 Aligned_cols=179 Identities=18% Similarity=0.271 Sum_probs=138.4
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.+| ++++++|+|||+|++++|+++|+++|+++||+|++|+|
T Consensus 178 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laAveAGa~~VD~ti~g~G 257 (539)
T 1rqb_A 178 VKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMS 257 (539)
T ss_dssp HHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGC
T ss_pred HHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEeccccC
Confidence 36789999999999999999999999999999999999998 69999999999999999999999999999999999999
Q ss_pred CCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeee
Q psy12516 80 GCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCV 159 (327)
Q Consensus 80 ~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~ 159 (327)
+ ++||+++|+++.+|+.+++++|+|.-.+.. +.++++.+...-......+. .
T Consensus 258 e------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~---------------------is~~v~~~~~~~~~~~~~~~-~ 309 (539)
T 1rqb_A 258 L------GPGHNPTESVAEMLEGTGYTTNLDYDRLHK---------------------IRDHFKAIRPKYKKFESKTL-V 309 (539)
T ss_dssp S------TTSBCBHHHHHHHTTTSSEECCCCHHHHHH---------------------HHHHHHHHGGGGGGGCCSCS-C
T ss_pred C------CccChhHHHHHHHHHhcCCCchhhHHHHHH---------------------HHHHHHHHhCCCcCCCCCcc-C
Confidence 9 999999999999999999999988766442 22222222211111110010 0
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCe
Q psy12516 160 VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADR 217 (327)
Q Consensus 160 ~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~ 217 (327)
-..-|.+..+...+.++..++.+.|.. | .=.++.+.++.+++.++.++
T Consensus 310 ~~~v~~he~pGG~~Snl~~q~~~~G~~-----~-----~~~~v~~~~~~v~~~~G~~~ 357 (539)
T 1rqb_A 310 DTSIFKSQIPGGMLSNMESQLRAQGAE-----D-----KMDEVMAEVPRVRKAAGFPP 357 (539)
T ss_dssp CCTHHHHCCCHHHHHHHHHHHHTTSCC-----T-----THHHHHHHHHHHHHHTTCCC
T ss_pred CCceEEecCCcchhhHHHHHHHHcCcH-----H-----HHHHHHHHHHHHHHHcCCCc
Confidence 001123466778899999999998875 1 23467777788877765543
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.89 E-value=6e-23 Score=198.44 Aligned_cols=177 Identities=23% Similarity=0.309 Sum_probs=135.3
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.++|+|+|+|+||+|.++|.+++++++.+++.+ ++++++|+|||+|++++|+++|+++|+++||+|++|+|+
T Consensus 161 ~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD~ti~g~ge 239 (464)
T 2nx9_A 161 VDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSG 239 (464)
T ss_dssp HHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHC-CSCEEEEECCTTSCHHHHHHHHHHTTCSEEEEBCGGGCS
T ss_pred HHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCC
Confidence 3678999999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHH-cCCeEEEEEeee
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALT-NGIRVRGYISCV 159 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~-~Gi~v~~~l~~~ 159 (327)
++||+++|+++.+|+.+++++|+|.-.+.. +++. ++. +.+.... .|. .. ..
T Consensus 240 ------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~-is~~-------------v~~---~~~~~~~~~~~-~~----g~ 291 (464)
T 2nx9_A 240 ------TYGHPATESLVATLQGTGYDTGLDIAKLEQ-IAAY-------------FRD---VRKKYHAFEGM-MK----GS 291 (464)
T ss_dssp ------TTSCCBHHHHHHHHTTSTTCCCCCHHHHHH-HHHH-------------HHH---HHHHTGGGCCS-CC----SC
T ss_pred ------CCcCHHHHHHHHHHHhcCCCcccCHHHHHH-HHHH-------------HHH---HHhhcccccCC-Cc----CC
Confidence 999999999999999999999988766542 2221 111 1111000 010 00 00
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCC
Q psy12516 160 VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD 216 (327)
Q Consensus 160 ~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~ 216 (327)
-..-+.+..+...+.++..++.+.|.. | .-.++.+.++.+++.++.+
T Consensus 292 ~~~v~~~~~pGg~~snl~~q~~~~g~~-----~-----~~~~v~~~~~~v~~~~G~~ 338 (464)
T 2nx9_A 292 DARILVAQVPGGMLTNMESQLKQQNAL-----D-----KLDLVLEEIPRVREELGFL 338 (464)
T ss_dssp CTHHHHHCCCHHHHHHHHHHHHTTSCG-----G-----GHHHHHHHHHHHHHHTTTC
T ss_pred cCCeEEecCCCchHhHHHHHHHHcCCH-----h-----HHHHHHHHHHHHHHHcCCC
Confidence 000012356778899999999988874 1 1246777777777766553
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.4e-23 Score=189.17 Aligned_cols=108 Identities=27% Similarity=0.391 Sum_probs=102.0
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
++++++.++|+++|+|+||+|.++|.+++++++.+++.+|+ +++++|+|||+|++++|+++|+++|+++||+|++||
T Consensus 154 ~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~Gl 233 (293)
T 3ewb_X 154 EAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTINGI 233 (293)
T ss_dssp HHHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGC
T ss_pred HHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEEEeecccc
Confidence 67899999999999999999999999999999999999985 679999999999999999999999999999999999
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhh----hhcccCcchhhhh
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEG----KSMQCGVKEIAVF 115 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~----~~~~~Gid~i~l~ 115 (327)
|| ++||+++|+++.+|+. +++++|+|.-.+.
T Consensus 234 Ge------raGN~~~E~vv~~L~~~~~~~g~~tgidl~~L~ 268 (293)
T 3ewb_X 234 GE------RAGNTALEEVAVALHIRKDFYQAETNIVLNQFK 268 (293)
T ss_dssp CT------TTCBCBHHHHHHHHHHTHHHHCEEECCCGGGHH
T ss_pred cc------ccccHhHHHHHHHHHhhhhhcCCCCCCCHHHHH
Confidence 99 9999999999999975 6899999987755
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-22 Score=205.22 Aligned_cols=181 Identities=19% Similarity=0.235 Sum_probs=137.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+++|+|+||+|.++|.+++++++.+++.+|++++++|+|||+|+|++|+++|+++|+++||+|++|||+
T Consensus 265 ~~a~~l~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~ti~GlGe- 343 (718)
T 3bg3_A 265 GLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSG- 343 (718)
T ss_dssp HHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEBCGGGCS-
T ss_pred HHHHHHHHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHHHHHhCCCEEEecCccccc-
Confidence 6789999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHH-HHHHHcCCeEEEEEeeec
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVV-STALTNGIRVRGYISCVV 160 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v-~~a~~~Gi~v~~~l~~~~ 160 (327)
++||+++|+++.+|+.+++++|+|...+.. +++. ++++...- .+-....+.- ..
T Consensus 344 -----rtGN~~lE~vv~~L~~~g~~tgidl~~L~~-~s~~-------------v~~~~~~~~~~~~~~~~~g------~~ 398 (718)
T 3bg3_A 344 -----MTSQPSMGALVACTRGTPLDTEVPMERVFD-YSEY-------------WEGARGLYAAFDCTATMKS------GN 398 (718)
T ss_dssp -----TTSCCBHHHHHHHHTTSTTCCCCCHHHHHH-HHHH-------------HHHHHHHTGGGCGGGTCCS------CC
T ss_pred -----ccCchhHHHHHHHHHhcCCCcccCHHHHHH-HHHH-------------HHHHhCCCcCCcCCccccc------cc
Confidence 999999999999999999999998876552 2222 11111110 0000011100 00
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeE
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL 218 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l 218 (327)
...+.+..+..++.++..++.++|.+. .-.++.+.+..+++.+.+.+.
T Consensus 399 ~~v~~~e~pGg~~snl~~q~~~~G~~~----------~~~~v~~~~~~v~~~lG~~~~ 446 (718)
T 3bg3_A 399 SDVYENEIPGGQYTNLHFQAHSMGLGS----------KFKEVKKAYVEANQMLGDLIK 446 (718)
T ss_dssp TTHHHHCCCHHHHHHHHGGGTTTSCTT----------HHHHHHHHHHHHHHHTTSCCC
T ss_pred cceeeccCcchHHHHHHHHHHHcCCCc----------cHHHHHHHHHHHHHHcCCCcc
Confidence 001122455667888888888776631 136788889999988766443
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=99.87 E-value=7.1e-22 Score=185.47 Aligned_cols=108 Identities=21% Similarity=0.330 Sum_probs=103.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++|++.|+++||+|.++|.+++++++.+++.+| ++++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 153 ~ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~tv~GlG~ 232 (345)
T 1nvm_A 153 EQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGA 232 (345)
T ss_dssp HHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS
T ss_pred HHHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEEEecchhccC
Confidence 6788999999999999999999999999999999999996 699999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+.+++++|+|...+.
T Consensus 233 ------~aGN~~le~lv~~L~~~g~~~~idl~~l~ 261 (345)
T 1nvm_A 233 ------GAGNAPLEVFIAVAERLGWNHGTDLYTLM 261 (345)
T ss_dssp ------TTCBCBHHHHHHHHHHHTCBCCSCHHHHH
T ss_pred ------CccCcCHHHHHHHHHhcCCCCCCCHHHHH
Confidence 99999999999999999999999987765
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-21 Score=205.24 Aligned_cols=195 Identities=17% Similarity=0.208 Sum_probs=148.1
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+++|+|+||+|.++|..++++++.+++.+ ++++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 696 ~~a~~~~~~Ga~~i~l~Dt~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~laA~~aGa~~vD~ai~GlG~- 773 (1150)
T 3hbl_A 696 KLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYKQAIDAGVDIIDTAVASMSG- 773 (1150)
T ss_dssp HHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCS-
T ss_pred HHHHHHHHcCCCeeeEcCccCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHHHHHHhCCCEEEEeccccCC-
Confidence 678999999999999999999999999999999999997 599999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
++||+++|+++.+|+.+++++|+|...+.. +.++++.+++.-......+.....
T Consensus 774 -----~~gn~~lE~lv~~L~~~g~~tgidl~~l~~---------------------~~~~~~~~~~~y~~~~~~~~~~~~ 827 (1150)
T 3hbl_A 774 -----LTSQPSANSLYYALNGFPRHLRTDIEGMES---------------------LSHYWSTVRTYYSDFESDIKSPNT 827 (1150)
T ss_dssp -----BTSCCBHHHHHHHTTTSSCCBCSCHHHHHH---------------------HHHHHHHHHGGGGGGCCSCCSCCT
T ss_pred -----CCCCccHHHHHHHHHhcCCCcCccHHHHHH---------------------HHHHHHHHHhhhccccCCCCCCcc
Confidence 889999999999999999999998766442 222233222211111100000000
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCc-CEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCc-CcHHHHHHH
Q psy12516 162 CPYEGAVPPHNVTRVATALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTY-GQALANILT 235 (327)
Q Consensus 162 ~~~~~r~~~e~l~~~~~~~~~~g~-~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~-g~a~an~l~ 235 (327)
.-+.+..+...+.++..|+.+.|. |+ =.++.+.+..+++.++.+++..-+..-. -+|+.|.+.
T Consensus 828 ~v~~~~~PGg~~snl~~q~~~~g~~~~-----------~~~v~~~~~~v~~~~g~~~~vtp~sq~vg~~a~~~v~~ 892 (1150)
T 3hbl_A 828 EIYQHEMPGGQYSNLSQQAKSLGLGER-----------FDEVKDMYRRVNFLFGDIVKVAPSSKVVGDMALYMVQN 892 (1150)
T ss_dssp THHHHCCCSSHHHHHHHHHHHTTCGGG-----------HHHHHHHHHHHHHHTTSCCCCTTHHHHHHHHHHHHHHT
T ss_pred ceEEeeCCCchhhHHHHHHHHCCcHhH-----------HHHHHHHHHHHHHHcCCCceECchhHHHHHHHHHHHHc
Confidence 012246788999999999999984 22 2578888999999887766544333322 346666544
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=6.5e-21 Score=181.01 Aligned_cols=107 Identities=25% Similarity=0.349 Sum_probs=98.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhc-CCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~-~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++ +++|+|+||+|.++|.++.++++.+++.+ |++++++|+|||+|+|++|+++|+++|+++||+|++||||
T Consensus 149 ~~~~~~~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGe 227 (382)
T 2ztj_A 149 AVYEAVAPY-VDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGE 227 (382)
T ss_dssp HHHHHHGGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS
T ss_pred HHHHHHHHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEccccccc
Confidence 678899999 99999999999999999999999999975 5799999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhh---hcccCcchhhhh
Q psy12516 81 CPYARGASGNVATEDLVYMLEGK---SMQCGVKEIAVF 115 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~---~~~~Gid~i~l~ 115 (327)
++||+++|+++..|+.. ++++|+|.-.+.
T Consensus 228 ------raGN~~lE~vv~~L~~~~~~g~~t~idl~~L~ 259 (382)
T 2ztj_A 228 ------RNGITPLGGFLARMYTLQPEYVRRKYKLEMLP 259 (382)
T ss_dssp ------TTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHH
T ss_pred ------cccchhHHHHHHHHHhhcCCcccCCCCHHHHH
Confidence 99999999999887643 477888876654
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.3e-20 Score=200.55 Aligned_cols=177 Identities=18% Similarity=0.207 Sum_probs=135.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|+++|+|+||+|.++|.+++++++.+++.+ ++++++|+|||+|++++|+++|+++|+++||+|++|||+
T Consensus 713 ~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~ti~GlGe- 790 (1165)
T 2qf7_A 713 NLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSG- 790 (1165)
T ss_dssp HHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCS-
T ss_pred HHHHHHHHcCCCEEEEeCccCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHHHHHHHhCCCEEEecccccCC-
Confidence 678999999999999999999999999999999999998 599999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
++||+++|+++.+|+.+++++|+|.-.+.. +++. ++..+..-......+.....
T Consensus 791 -----~~Gn~~le~vv~~L~~~g~~tgidl~~L~~-~s~~--------------------~~~~~~~~~~~~~~~~~~~~ 844 (1165)
T 2qf7_A 791 -----NTSQPCLGSIVEALSGSERDPGLDPAWIRR-ISFY--------------------WEAVRNQYAAFESDLKGPAS 844 (1165)
T ss_dssp -----BTSCCBHHHHHHHHTTSTTCCCCCHHHHHH-HHHH--------------------HHHHHGGGGGGCCCCCSCCT
T ss_pred -----CccchhHHHHHHHHHhcCCCccccHHHHHH-HHHH--------------------HHHHhhhccCCCCCccCCcc
Confidence 899999999999999999999988766542 2222 11111110000000000000
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCC
Q psy12516 162 CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD 216 (327)
Q Consensus 162 ~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~ 216 (327)
.-+.+..+..++.++..++.+.|.. -.-.++.+.++.+++.+...
T Consensus 845 ~v~~~~~pGG~~snl~~q~~~~g~~----------~~~~~v~~~~~~v~~~~G~~ 889 (1165)
T 2qf7_A 845 EVYLHEMPGGQFTNLKEQARSLGLE----------TRWHQVAQAYADANQMFGDI 889 (1165)
T ss_dssp THHHHCCCHHHHHHHHHHHHHTTCG----------GGHHHHHHHHHHHHHHTTSC
T ss_pred ceEeccCCCccHHHHHHHHHHcCCc----------hHHHHHHHHHHHHHHHcCCC
Confidence 0012345677899999999999885 12356777778887776553
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-20 Score=179.54 Aligned_cols=157 Identities=20% Similarity=0.320 Sum_probs=124.2
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++++.++|++.|+|+||+|.++|.++.++++.+++..+ +++++|+|||+|++++|+++|+++|+++||+|++|+||
T Consensus 184 ~v~~~~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~~~-~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~ti~GlGE- 261 (423)
T 3ivs_A 184 SLYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVS-CDIECHFHNDTGMAIANAYCALEAGATHIDTSILGIGE- 261 (423)
T ss_dssp HHHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHHCS-SEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS-
T ss_pred HHHHHHHHhCCCccccCCccCcCCHHHHHHHHHHHHhhcC-CeEEEEECCCCchHHHHHHHHHHhCCCEEEEecccccC-
Confidence 6788999999999999999999999999999999999875 89999999999999999999999999999999999999
Q ss_pred CCCCCccCCCcHHHHHHHhhhh---hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHH---HHHHcCCeEEEE
Q psy12516 82 PYARGASGNVATEDLVYMLEGK---SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVS---TALTNGIRVRGY 155 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~---~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~---~a~~~Gi~v~~~ 155 (327)
|+||+++|+++..|... .+++++|.-.+. .+++.+.+. .++..+ ..++++. +++++|+|+.+.
T Consensus 262 -----RaGNa~Le~vv~~L~~~~~~~~~~~idl~~L~-~is~~v~~~-~~~~v~----~~kpivG~~aFah~sGiH~dgi 330 (423)
T 3ivs_A 262 -----RNGITPLGALLARMYVTDREYITHKYKLNQLR-ELENLVADA-VEVQIP----FNNYITGMCAFTHKAGIHAKAI 330 (423)
T ss_dssp -----TTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHH-HHHHHHHHH-TTCCCC----TTCTTTSTTTTEEECSGGGGGS
T ss_pred -----cccchhHHHHHHHHHhhcccCCCCCcCHHHHH-HHHHHHHHH-hCCCCC----CCCCchhHhHHHhhcchhHHHH
Confidence 99999999999877543 567777776654 444443322 222221 1344443 678899998877
Q ss_pred EeeeccCCCCCCCChHHHH
Q psy12516 156 ISCVVGCPYEGAVPPHNVT 174 (327)
Q Consensus 156 l~~~~g~~~~~r~~~e~l~ 174 (327)
+.... .|+ .++|+.+.
T Consensus 331 lk~~~--tYe-~~~Pe~vG 346 (423)
T 3ivs_A 331 LANPS--TYE-ILKPEDFG 346 (423)
T ss_dssp SSCGG--GCC-SSCGGGGT
T ss_pred hCCcc--ccC-CcCHHHcC
Confidence 66542 333 46777655
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.5e-20 Score=171.35 Aligned_cols=98 Identities=26% Similarity=0.317 Sum_probs=91.6
Q ss_pred HHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCc
Q psy12516 8 YKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGA 87 (327)
Q Consensus 8 ~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~ 87 (327)
.+.|++.|+|+||+|.++|.+++++++.+++.+| +++++|+|||+|++++|+++|+++|+++||+|++|||+ +
T Consensus 153 ~~~G~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~-~~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si~GlG~------~ 225 (320)
T 3dxi_A 153 IDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTH-VPVGFHGHDNLQLGLINSITAIDDGIDFIDATITGMGR------G 225 (320)
T ss_dssp GTTTCSEEEEECTTSCCCHHHHHHHHHHHHHHCC-SCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSS------T
T ss_pred hhCCCCEEEECcccCCCCHHHHHHHHHHHHHhCC-CeEEEEeCCCCccHHHHHHHHHHhCCCEEEEeccccCC------c
Confidence 3679999999999999999999999999999997 89999999999999999999999999999999999999 8
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhh
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIA 113 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~ 113 (327)
+||+++|+++.+|+. ..++|+|...
T Consensus 226 ~GN~~~E~lv~~L~~-~~~~~~dl~~ 250 (320)
T 3dxi_A 226 AGNLKMELLLTYLNK-HHGLNVDFNV 250 (320)
T ss_dssp TCBCBHHHHHHHHHH-HSCCCCCHHH
T ss_pred ccchhHHHHHHHHHh-ccCCCcCHHH
Confidence 999999999999987 5677777653
|
| >3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-19 Score=177.05 Aligned_cols=113 Identities=19% Similarity=0.180 Sum_probs=102.3
Q ss_pred HHHHHHHHc---CcC---EEEecCCccccCHHHHHHHHHHHHhhcC---CCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKM---GCY---EISLGDTIGVGTPGTMRLMLEDVLTVIP---ADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~---g~~---~i~~~Dt~G~~~p~~~~~~~~~~~~~~~---~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
++++.+.++ |+| .|+|+||+|.++|..+.++++.+++.+| .+++++|+|||+||+++|+++|+++|+++||
T Consensus 230 ev~~aa~eaG~~Gad~~~~I~LpDTvG~~tP~~~~~li~~l~~~v~~~~~v~l~vH~HND~GlAvANslaAv~AGA~~Vd 309 (644)
T 3hq1_A 230 QVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIE 309 (644)
T ss_dssp HHHHHHHHHHCCCSSSCEEEEEEESSCCSCHHHHHHHHHHHHHHSTTGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHhcCCCCCceeEEEecCCCcccCHHHHHHHHHHHHHhcccccCceEEEecCCCCCcHHHHHHHHHHhCCCEEE
Confidence 567788875 677 8999999999999999999999999997 3789999999999999999999999999999
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHH
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEM 121 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~ 121 (327)
+|++|+|| |+||+++|+++.+|..+++++|+|.-.+. .+++.
T Consensus 310 gti~G~GE------RaGNa~LE~lv~~L~~~Gi~tgidl~~L~-~is~~ 351 (644)
T 3hq1_A 310 GCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQIDFSNID-EIRRT 351 (644)
T ss_dssp EBGGGCSS------TTCBCBHHHHHHHHHTTTCCCSSCCTTHH-HHHHH
T ss_pred ecCCCCCc------cccCccHHHHHHHHHhcccCCccCHHHHH-HHHHH
Confidence 99999999 99999999999999989999999887654 33443
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00053 Score=63.64 Aligned_cols=134 Identities=11% Similarity=0.077 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec------CC----CCccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG------DT----IGVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~------Dt----~G~~~P~~~~~ 204 (327)
.+...+.++.+++.|+++...++. |. --+.+.+.+..+.+.+.+++.+.+- +| ....++.+..+
T Consensus 187 ~~~~l~~i~~a~~~Gi~v~~~~i~--Gl----get~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~l~~~~~~~~~e~l~ 260 (350)
T 3t7v_A 187 FDGRVNARRFAKQQGYCVEDGILT--GV----GNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTPLEGFRDKSNLSELK 260 (350)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEEEE--SS----SCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTSTTTTCCCCCCCCHHH
T ss_pred HHHHHHHHHHHHHcCCeEccceEe--ec----CCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCcCccCCCCChHHHHH
Confidence 455667788999999998766554 32 1467888899999999999866542 22 11245678888
Q ss_pred HHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCC--------CCccHHHHHHHHHhC
Q psy12516 205 MLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGAS--------GNVATEDLVYMLEGM 276 (327)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~--------Gn~~~e~~~~~l~~~ 276 (327)
+++..|-.+|...|-.-.. ..+......++.+||+-+..++..- +.+.|.. ++.+.++++..++..
T Consensus 261 ~ia~~Rl~lp~~~I~a~~~---~~g~~~~~~~l~~Gan~~~~~~~~~---~~~ag~~~~~~~~~~~~~~~~~~~~~i~~~ 334 (350)
T 3t7v_A 261 IISVLRLMFPKRLIPASLD---LEGIDGMVLRLNAGANIVTSILPPD---SQLEGVANYDRDLEERDRDIKSVVRRLEIM 334 (350)
T ss_dssp HHHHHHHHSTTSBCEEEHH---HHHHHHHHHHHHTTCCEEEEECCSS---CCCCCSSCTTTTCSSCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCcccccc---ccChhHHHHHHhcCCceecCCCCCC---CCCCCCCCCcccchhccCCHHHHHHHHHHc
Confidence 8988888888754443221 2334567889999999999887754 1112211 357899999999998
Q ss_pred CCCC
Q psy12516 277 GIET 280 (327)
Q Consensus 277 g~~~ 280 (327)
|+.+
T Consensus 335 G~~~ 338 (350)
T 3t7v_A 335 GMKP 338 (350)
T ss_dssp TCEE
T ss_pred CCcc
Confidence 8765
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00041 Score=61.93 Aligned_cols=96 Identities=14% Similarity=0.138 Sum_probs=59.2
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHH---HHHHHHHHHHh
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGT---MRLMLEDVLTV 212 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~---~~~~~~~~~~~ 212 (327)
+...++++.++++|+.+.. +..| ..+.+.+.++++..... ++.+.+.+++|..+|.. +.++++.+|+.
T Consensus 134 ee~~~~~~~~~~~gl~~i~-----l~~p---~t~~~rl~~ia~~a~gf-iy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~ 204 (262)
T 2ekc_A 134 EEAEELKAVMKKYVLSFVP-----LGAP---TSTRKRIKLICEAADEM-TYFVSVTGTTGAREKLPYERIKKKVEEYREL 204 (262)
T ss_dssp HHHHHHHHHHHHTTCEECC-----EECT---TCCHHHHHHHHHHCSSC-EEEESSCC---------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcEEE-----EeCC---CCCHHHHHHHHHhCCCC-EEEEecCCccCCCCCcCcccHHHHHHHHHhh
Confidence 3466677889999987521 1122 25566666666554321 34556678999887754 78899999987
Q ss_pred cCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 213 IPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
. ++|+.+ ..|...++.+..+.+|+|.|=
T Consensus 205 ~-~~pv~v----G~GI~t~e~~~~~~~gADgvI 232 (262)
T 2ekc_A 205 C-DKPVVV----GFGVSKKEHAREIGSFADGVV 232 (262)
T ss_dssp C-CSCEEE----ESSCCSHHHHHHHHTTSSEEE
T ss_pred c-CCCEEE----eCCCCCHHHHHHHHcCCCEEE
Confidence 6 457766 668888888888999987653
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.011 Score=54.28 Aligned_cols=140 Identities=14% Similarity=0.073 Sum_probs=86.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe------cCCC----CccCHHHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL------GDTI----GVGTPGTMRL 204 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l------~Dt~----G~~~P~~~~~ 204 (327)
++...+.++.+++.|+.+...+. +|.|. -+.+.+.+.++.+.+.+++.+.+ ++|- ...+++++.+
T Consensus 177 ~~~~~~~i~~~~~~Gi~v~~~~i--~G~p~---et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~~~~~~~~~e~~~ 251 (348)
T 3iix_A 177 FENRLNCLLTLKELGYETGAGSM--VGLPG---QTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLK 251 (348)
T ss_dssp HHHHHHHHHHHHHTTCEEEECBE--ESCTT---CCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTTTSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeccceE--EeCCC---CCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcccCCCCCHHHHHH
Confidence 55667778889999998765544 44432 46788888999999988886443 2321 2345788888
Q ss_pred HHHHHHHhcCCCeEEEeecCCcCc---HHHHHHHHHHhcCceeeecc--ccCCC-CCCCC-----CCCCCccHHHHHHHH
Q psy12516 205 MLEDVLTVIPADRLAVHCHDTYGQ---ALANILTAMEFGISVFDSSI--AGLGG-CPYAR-----GASGNVATEDLVYML 273 (327)
Q Consensus 205 ~~~~~~~~~~~~~l~~H~Hn~~g~---a~an~l~a~~~G~~~vd~s~--~G~G~-~p~~~-----g~~Gn~~~e~~~~~l 273 (327)
+++.+|..+|.+.|-. ..++ .......++.+||+.+-..+ .+.-+ ....+ +..-.-+.++++..+
T Consensus 252 ~~a~~R~~lp~~~i~~----~~~~~~~~~~~~~~~l~~Gan~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (348)
T 3iix_A 252 MVALTRILLPDSNIPA----TTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKICVFEKDTACIPCVMKMI 327 (348)
T ss_dssp HHHHHHHHSTTSBCBC----CHHHHHHSTTHHHHHHTTTCCEECCBCCCTTTGGGCCSSSCCTTTTSCTTCHHHHHHHHH
T ss_pred HHHHHHHHCCCCCchh----cchhhhcCHHHHHHHHhcCCcEEeCCCCchhcccccccCCCCcccCCCchhhHHHHHHHH
Confidence 8998888888743322 1111 11234568899999876322 22110 00000 112244578888888
Q ss_pred HhCCCCCCCC
Q psy12516 274 EGMGIETGAD 283 (327)
Q Consensus 274 ~~~g~~~~~d 283 (327)
+..|+.+..+
T Consensus 328 ~~~g~~~~~~ 337 (348)
T 3iix_A 328 ELLGRKPGRD 337 (348)
T ss_dssp HHTTCEECSS
T ss_pred HHcCCEeCCC
Confidence 8888776554
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.052 Score=50.45 Aligned_cols=131 Identities=10% Similarity=0.030 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC--cCEEEe------cCC----CCccCHHHH
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG--CYEISL------GDT----IGVGTPGTM 202 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g--~~~i~l------~Dt----~G~~~P~~~ 202 (327)
++...+.++.+++.|+.+...+. +|- .-+.+++.+.++.+.+++ ++.+.+ ++| ....++.+.
T Consensus 193 ~~~~l~~i~~a~~~Gi~v~~~~I--~Gl----~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l~~~~~~~~~~~ 266 (369)
T 1r30_A 193 YQERLDTLEKVRDAGIKVCSGGI--VGL----GETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDF 266 (369)
T ss_dssp HHHHHHHHHHHHHHHCEEECCEE--ECS----SCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHH
T ss_pred HHHHHHHHHHHHHcCCeeeeeeE--eeC----CCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcCCCCCCCCHHHH
Confidence 44566677788888998765443 331 136788889999998887 666543 233 123467888
Q ss_pred HHHHHHHHHhcCCCeEEEeecCCc-CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 203 RLMLEDVLTVIPADRLAVHCHDTY-GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~H~Hn~~-g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
.+++...+..+|.. .+|.-.-. .+.-.....++.+||+.+- . |+.+. .++|.+.++.+..+++.|+...
T Consensus 267 ~~~~~~~r~~l~~~--~i~i~~~~~~l~~~~~~~~l~~Gan~~~---~--g~~~~---t~~~~~~~~~~~~i~~~g~~~~ 336 (369)
T 1r30_A 267 IRTIAVARIMMPTS--YVRLSAGREQMNEQTQAMCFMAGANSIF---Y--GCKLL---TTPNPEEDKDLQLFRKLGLNPQ 336 (369)
T ss_dssp HHHHHHHHHHCTTS--EEEEESSGGGSCHHHHHHHHHHTCCEEE---C--SSBSS---SSBCCCHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHHHhCCCC--ceEeecchhhcChHHHHHHhhCCCceEE---e--CCeee---CCCCCCHHHHHHHHHHcCCCee
Confidence 88899898888874 33322111 1222335567899998432 2 33111 2467889999999999887653
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0046 Score=55.36 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=55.0
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc--CHHHHHHHHHHHHHhcCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG--TPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~--~P~~~~~~~~~~~~~~~~ 215 (327)
..++.+.+++.|+.... +. .| .++.+.+.++.+..... ++.+.+.+++|.. .|.++.++++.+|+...
T Consensus 139 ~~~~~~~~~~~gl~~I~-lv----ap---~t~~eri~~i~~~~~gf-iY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~~- 208 (271)
T 3nav_A 139 SQPFVAAAEKFGIQPIF-IA----PP---TASDETLRAVAQLGKGY-TYLLSRAGVTGAETKANMPVHALLERLQQFDA- 208 (271)
T ss_dssp CHHHHHHHHHTTCEEEE-EE----CT---TCCHHHHHHHHHHCCSC-EEECCCC--------CCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHcCCeEEE-EE----CC---CCCHHHHHHHHHHCCCe-EEEEeccCCCCcccCCchhHHHHHHHHHHhcC-
Confidence 55678889999998531 22 12 24455555444432111 2333456777865 36789999999998763
Q ss_pred CeEEEeecCCcCcHHHHHHH-HHHhcCceee
Q psy12516 216 DRLAVHCHDTYGQALANILT-AMEFGISVFD 245 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~-a~~~G~~~vd 245 (327)
.|+.+ .+|........ ++.+|+|.|=
T Consensus 209 ~Pv~v----GfGIst~e~~~~~~~~gADgvI 235 (271)
T 3nav_A 209 PPALL----GFGISEPAQVKQAIEAGAAGAI 235 (271)
T ss_dssp CCEEE----CSSCCSHHHHHHHHHTTCSEEE
T ss_pred CCEEE----ECCCCCHHHHHHHHHcCCCEEE
Confidence 56666 45666566666 8899988653
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.019 Score=52.45 Aligned_cols=112 Identities=15% Similarity=0.251 Sum_probs=77.9
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC-----CCCChHHHHHHHHHHHHcCcCEE--EecCCCCccC-HHH
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE-----GAVPPHNVTRVATALYKMGCYEI--SLGDTIGVGT-PGT 201 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~-----~r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~~-P~~ 201 (327)
+.+|+++..++++++|+..|+.|++-|...-|.++. -.++|++..+++++ .|+|.+ .+.-+.|.-. |..
T Consensus 110 p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~---TgvD~LAvaiGt~HG~Yk~~~~ 186 (323)
T 2isw_A 110 PFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVEL---TGVDALAVAIGTSHGAYKFKSE 186 (323)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCEEEEEESCC----------CCCCCHHHHHHHHHH---HCCSEEEECSSCCSSSBCCCC-
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeCCccCCccCcccccccCCHHHHHHHHHH---HCCCEEEEecCccccccCCCCC
Confidence 346678999999999999999999888775443431 24788888877764 589854 4445666533 122
Q ss_pred HH-----HHHHHHHHhcCCCeEEEeecC-------------------CcCcHHHHHHHHHHhcCceee
Q psy12516 202 MR-----LMLEDVLTVIPADRLAVHCHD-------------------TYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 202 ~~-----~~~~~~~~~~~~~~l~~H~Hn-------------------~~g~a~an~l~a~~~G~~~vd 245 (327)
.. ++++.+++.++ +||.+|.=. ..|........|++.|+..|.
T Consensus 187 p~~~L~~~~L~~I~~~~~-vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e~i~~ai~~GV~KiN 253 (323)
T 2isw_A 187 SDIRLAIDRVKTISDLTG-IPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKIN 253 (323)
T ss_dssp ---CCCCHHHHHHHHHHC-SCEEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTEEEEE
T ss_pred cccccCHHHHHHHHHHhC-CCeEEECCCCCCHHHHHHHHHhccccccCCCCCHHHHHHHHHCCCeEEE
Confidence 22 46777777774 799999844 678888999999999987654
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.018 Score=52.26 Aligned_cols=112 Identities=21% Similarity=0.237 Sum_probs=74.7
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEEEe--cCCCCccC-
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEISL--GDTIGVGT- 198 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~- 198 (327)
+.+|+++..++++++|++.|+.|++-|...-|.++. -.++|++..+++++ .|+|.+.+ .-..|.-.
T Consensus 109 p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~---TgvD~LAvaiGt~HG~Yk~ 185 (307)
T 3n9r_A 109 AFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKE---SQVDYLAPAIGTSHGAFKF 185 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHHH---HCCSEEEECSSCCSSSBCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHH---HCCCEEEEecCCcccccCC
Confidence 345678899999999999999999887765444332 24788888877654 68996544 45555421
Q ss_pred ---HHHHHHHHHHHHHhcCCCeEEEeecC-------------------CcCcHHHHHHHHHHhcCceee
Q psy12516 199 ---PGTMRLMLEDVLTVIPADRLAVHCHD-------------------TYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 ---P~~~~~~~~~~~~~~~~~~l~~H~Hn-------------------~~g~a~an~l~a~~~G~~~vd 245 (327)
|.==.++++.+++ .+++||.+|.=. +.|..-.....|++.|+..|.
T Consensus 186 ~~~p~Ld~~~L~~I~~-~~~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~GV~KiN 253 (307)
T 3n9r_A 186 KGEPKLDFERLQEVKR-LTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVN 253 (307)
T ss_dssp SSSCCCCHHHHHHHHH-HHCSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTEEEEE
T ss_pred CCCCccCHHHHHHHHh-cCCCCeEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHHHHHHHcCceEEE
Confidence 3111222333433 345789999744 668888889999999987754
|
| >2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.044 Score=50.34 Aligned_cols=145 Identities=9% Similarity=0.067 Sum_probs=88.6
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHH--------HHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRL--------MLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~--------~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...++|+|.|.+.|+. |.++|...++ +++.+++. |+.++-+|+..+ ...+..+ +.|++.+
T Consensus 183 ~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~~g~-----~~~l~~l~~~g~d~~ 256 (338)
T 2eja_A 183 AYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFFRGS-----SSFIDLAVDYRADAL 256 (338)
T ss_dssp HHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEESSH-----HHHHHHHTTSCCSEE
T ss_pred HHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEcCCc-----HHHHHHHHHcCCCEE
Confidence 46777889999999999976 6789987544 44555554 457776676333 3456666 7898887
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR 151 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~ 151 (327)
.. .. ..+++++...+ +..+.-|+|.. ++ ..+.+++.+.++++++.....+.+
T Consensus 257 ~~-----d~---------~~dl~~~~~~~-~~~l~Gn~dp~-~l------------~gt~e~i~~~v~~~l~~~g~~~g~ 308 (338)
T 2eja_A 257 SV-----DW---------SVDIPELFKIY-DKGFQGNLEPA-VL------------YASEEVIEEKTLGLLRRIPVKTRY 308 (338)
T ss_dssp EC-----CT---------TSCHHHHHHHC-CSEEECCBCGG-GG------------GSCHHHHHHHHHHHHTTCCCSSSE
T ss_pred Ee-----CC---------CCCHHHHHHhC-CeEEEECCCHH-Hh------------cCCHHHHHHHHHHHHHHhCCCCCe
Confidence 63 11 24666666555 45555667652 22 124455555556565542211222
Q ss_pred EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc
Q psy12516 152 VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC 185 (327)
Q Consensus 152 v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~ 185 (327)
+- ..||.....+++|.+..+.+.+.++|.
T Consensus 309 I~-----~~g~gi~~~~p~en~~a~v~~v~~~~~ 337 (338)
T 2eja_A 309 VF-----NLGHGLAPDMELEKVKYLVDLVKSFPL 337 (338)
T ss_dssp EB-----CBSSCCCTTSCHHHHHHHHHHHHTCCC
T ss_pred EE-----eCCCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 21 234433346899999999999888764
|
| >3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.021 Score=54.17 Aligned_cols=209 Identities=11% Similarity=0.131 Sum_probs=118.6
Q ss_pred cCHHHHHHHHHHHHhh-cCCCeeEEEecC------ccch---HHHHHHHHH--HcCCcE----EEecccCCCCCCCCCCc
Q psy12516 24 GTPGTMRLMLEDVLTV-IPADRLAVHCHD------TYGQ---ALANILTAM--EFGISV----FDSSIAGLGGCPYARGA 87 (327)
Q Consensus 24 ~~p~~~~~~~~~~~~~-~~~~~~~~H~h~------~~g~---~~~~~~~a~--~aG~~~----id~~~~glg~~p~~~~~ 87 (327)
..|+-++-.++.-++. .| +-|+...-. ..|+ ..+..+.++ ++|+.. +..=++ |..||.
T Consensus 29 ~n~e~i~Ail~aAee~~sP-VIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~LhlDHg--~~~~w~--- 102 (450)
T 3txv_A 29 AHPLVIEAAMLRAHREKAP-VLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLGGDHL--GPNPWK--- 102 (450)
T ss_dssp CCHHHHHHHHHHHHHSCSC-EEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEEEEEE--SSGGGT---
T ss_pred CCHHHHHHHHHHHHHhCCC-EEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEECCCC--CCcccc---
Confidence 6788888888777663 33 444444321 1132 344555444 577762 221122 222342
Q ss_pred cCCCcHHHHHHH---hhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEE-EeeeccCC
Q psy12516 88 SGNVATEDLVYM---LEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGY-ISCVVGCP 163 (327)
Q Consensus 88 ~gn~~~e~v~~~---l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~-l~~~~g~~ 163 (327)
+.+.++-+.. +....++.|...+.+=.+... ...|+..+.+-+.++..+++++|++.+..+... +.+..|.+
T Consensus 103 --~~~~~~am~~a~e~i~~aI~AGFtSVMiD~S~~p--~eeNi~lt~evva~rtaeL~~~A~~~~~~~g~~e~~yviGtE 178 (450)
T 3txv_A 103 --HLPADEAMAKAEAMITAYAKAGFTKLHLDTSMGC--AGEPTALPDATTAARAARLAAVAEDAVGGRGGVLPVYIIGTE 178 (450)
T ss_dssp --TSCHHHHHHHHHHHHHHHHTTTCCEEEECCCBCC--SSSCSBCCHHHHHHHHHHHHHHHHHTC------CCEEEEECC
T ss_pred --cccHHHHHHHHHHHHHHHHHcCCCEEEECCCCCc--hhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeeee
Confidence 4444443322 223567778777765333222 234566677777789999999999865443111 22333443
Q ss_pred CC------------CCCChHHHHHHHHH----HHHcCcC-----EEEecCCCCccC---------HHHHHHHHHHHHHhc
Q psy12516 164 YE------------GAVPPHNVTRVATA----LYKMGCY-----EISLGDTIGVGT---------PGTMRLMLEDVLTVI 213 (327)
Q Consensus 164 ~~------------~r~~~e~l~~~~~~----~~~~g~~-----~i~l~Dt~G~~~---------P~~~~~~~~~~~~~~ 213 (327)
+. ..++|+...+.++. +.+.|.+ .+.++=..|+.. ++. .+.|++.+
T Consensus 179 vpvpGGa~~~~~~~~~T~PeeA~~fv~~~~~~f~~~gld~~w~~v~~lvVqpGt~f~~~~v~~y~~e~----~~~L~~~v 254 (450)
T 3txv_A 179 VPIPGGALEELDTLEVTAPEAAIETVRVHRAAFEEAGAAGAFSRVVGAVVQPGVEFGNENVIAYDRAR----AEKLSATL 254 (450)
T ss_dssp -------------CCCCCHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEECCCSCEECSSCEECCCTTT----TSHHHHGG
T ss_pred cCCCCccccccccCCCCCHHHHHHHHHHHHHHHHHhCcccccCceeEEEecCCcccCCCCCCCCCHHH----HHHHHHHh
Confidence 21 25788877777654 4455663 445555555433 333 44455555
Q ss_pred CCCe-EEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADR-LAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~-l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
++.| |.+|.|++-|..-.+...+++.|+..+.+
T Consensus 255 ~~~P~LVlhghStDy~~~e~l~~~V~~GiaklNV 288 (450)
T 3txv_A 255 GQLHGMVFEAHSTDYQTPDALRELVADGFAILKV 288 (450)
T ss_dssp GTSTTCEEEESCCTTCCHHHHHHHHHTTEEEEEE
T ss_pred ccCCCEEEecCCCCCCCHHHHHHHHHcCCcEEEE
Confidence 4456 99999999999999999999999988765
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=96.67 E-value=0.065 Score=48.15 Aligned_cols=110 Identities=22% Similarity=0.224 Sum_probs=75.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC------CCCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc--CHH
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE------GAVPPHNVTRVATALYKMGCYEISL--GDTIGVG--TPG 200 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~------~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~--~P~ 200 (327)
.+|+++..++++++|++.|+.|++-+...-|.++. -.++|++..++++ +.|+|.+.+ .-..|.- .|.
T Consensus 116 ~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~ 192 (288)
T 3q94_A 116 FEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE---ATGIDCLAPALGSVHGPYKGEPN 192 (288)
T ss_dssp HHHHHHHHHHHHHHHHTTTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHH---HHCCSEEEECSSCBSSCCSSSCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHH---HHCCCEEEEEcCcccCCcCCCCc
Confidence 45668889999999999999999888775454442 2578888777655 568996544 3444431 122
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
==.++++.+++..+ +||.+|.=. |..-.....|++.|+..|..
T Consensus 193 Ld~~~L~~I~~~v~-vpLVlHGgS--G~~~e~i~~ai~~Gv~KiNi 235 (288)
T 3q94_A 193 LGFAEMEQVRDFTG-VPLVLHGGT--GIPTADIEKAISLGTSKINV 235 (288)
T ss_dssp CCHHHHHHHHHHHC-SCEEECCCT--TCCHHHHHHHHHTTEEEEEE
T ss_pred cCHHHHHHHHHhcC-CCEEEeCCC--CCCHHHHHHHHHcCCeEEEE
Confidence 12234556666666 688887654 77788899999999877643
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.036 Score=49.42 Aligned_cols=94 Identities=15% Similarity=0.109 Sum_probs=54.4
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc--CHHHHHHHHHHHHHhcCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG--TPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~--~P~~~~~~~~~~~~~~~~ 215 (327)
..++++.+++.|+.... +. .| .++.+.+.++.+..... ++.+.+..++|.. .|.++.++++.+|+...
T Consensus 137 ~~~~~~~~~~~gl~~i~-li----aP---~t~~eri~~i~~~~~gf-vY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~- 206 (267)
T 3vnd_A 137 SAPFSKAAKAHGIAPIF-IA----PP---NADADTLKMVSEQGEGY-TYLLSRAGVTGTESKAGEPIENILTQLAEFNA- 206 (267)
T ss_dssp CHHHHHHHHHTTCEEEC-EE----CT---TCCHHHHHHHHHHCCSC-EEESCCCCCC--------CHHHHHHHHHTTTC-
T ss_pred HHHHHHHHHHcCCeEEE-EE----CC---CCCHHHHHHHHHhCCCc-EEEEecCCCCCCccCCcHHHHHHHHHHHHhcC-
Confidence 45667888999998632 11 12 24555555444332111 2333346667765 36778999999998753
Q ss_pred CeEEEeecCCcCcHHHHHHH-HHHhcCceee
Q psy12516 216 DRLAVHCHDTYGQALANILT-AMEFGISVFD 245 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~-a~~~G~~~vd 245 (327)
.|+.+ .+|........ ++.+|+|.|=
T Consensus 207 ~pv~v----GfGI~~~e~~~~~~~~gADgvV 233 (267)
T 3vnd_A 207 PPPLL----GFGIAEPEQVRAAIKAGAAGAI 233 (267)
T ss_dssp CCEEE----CSSCCSHHHHHHHHHTTCSEEE
T ss_pred CCEEE----ECCcCCHHHHHHHHHcCCCEEE
Confidence 56766 55776566666 8999988653
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=96.48 E-value=0.04 Score=47.93 Aligned_cols=166 Identities=14% Similarity=0.082 Sum_probs=94.6
Q ss_pred HHHHHHHcCcC--EEEecCCccccCHHH--HHHHHHHHHhhc-CCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 3 VASALYKMGCY--EISLGDTIGVGTPGT--MRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 3 ~~~~~~~~g~~--~i~~~Dt~G~~~p~~--~~~~~~~~~~~~-~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
-++++.+.|+| .+.++| |...|.- =...++.+++.+ +..++..|.+-+.-.. -+-.+.++|++++-.-
T Consensus 22 ~i~~l~~~g~d~~h~DVmD--g~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~--~i~~~~~aGad~itvH--- 94 (228)
T 3ovp_A 22 ECLRMLDSGADYLHLDVMD--GHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQ--WVKPMAVAGANQYTFH--- 94 (228)
T ss_dssp HHHHHHHTTCSCEEEEEEB--SSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGG--GHHHHHHHTCSEEEEE---
T ss_pred HHHHHHHcCCCEEEEEecC--CCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHH--HHHHHHHcCCCEEEEc---
Confidence 45678889999 677788 5543322 123567777775 6677888887543211 1223346666666531
Q ss_pred CCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy12516 78 LGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYIS 157 (327)
Q Consensus 78 lg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~ 157 (327)
.| . .+.+.+.++.+++.|+++...+.
T Consensus 95 -~E------a-----------------------------------------------~~~~~~~i~~i~~~G~k~gval~ 120 (228)
T 3ovp_A 95 -LE------A-----------------------------------------------TENPGALIKDIRENGMKVGLAIK 120 (228)
T ss_dssp -GG------G-----------------------------------------------CSCHHHHHHHHHHTTCEEEEEEC
T ss_pred -cC------C-----------------------------------------------chhHHHHHHHHHHcCCCEEEEEc
Confidence 11 0 00123446667778887754332
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 233 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~ 233 (327)
| .++.+.+.++.. .+|.|.+ +...|.....+..+.++.+|+..++.++++ |.|....|.
T Consensus 121 -----p---~t~~e~l~~~l~-----~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~V----dGGI~~~t~ 183 (228)
T 3ovp_A 121 -----P---GTSVEYLAPWAN-----QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEV----DGGVGPDTV 183 (228)
T ss_dssp -----T---TSCGGGTGGGGG-----GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCSTTTH
T ss_pred -----C---CCCHHHHHHHhc-----cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcCCCCEEE----eCCcCHHHH
Confidence 1 133444333322 2565543 233343222334455888888776666666 567777899
Q ss_pred HHHHHhcCceeee
Q psy12516 234 LTAMEFGISVFDS 246 (327)
Q Consensus 234 l~a~~~G~~~vd~ 246 (327)
-.++++|++.+=+
T Consensus 184 ~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 184 HKCAEAGANMIVS 196 (228)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999998643
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.029 Score=47.74 Aligned_cols=92 Identities=17% Similarity=0.138 Sum_probs=56.7
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~ 214 (327)
+.++++.+++.|+++...+. ++ ....+.++.+.+.|+|.|++- .| ...+....+.++.+++.++
T Consensus 92 ~~~~~~~~~~~g~~~~v~~~----~~-------~t~~~~~~~~~~~g~d~i~v~--~g~~g~~~~~~~~~~i~~l~~~~~ 158 (211)
T 3f4w_A 92 IQSCIRAAKEAGKQVVVDMI----CV-------DDLPARVRLLEEAGADMLAVH--TGTDQQAAGRKPIDDLITMLKVRR 158 (211)
T ss_dssp HHHHHHHHHHHTCEEEEECT----TC-------SSHHHHHHHHHHHTCCEEEEE--CCHHHHHTTCCSHHHHHHHHHHCS
T ss_pred HHHHHHHHHHcCCeEEEEec----CC-------CCHHHHHHHHHHcCCCEEEEc--CCCcccccCCCCHHHHHHHHHHcC
Confidence 34566777778887643111 11 123455677888899988763 22 1111112456778887776
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+.++.. +.|....|...++++|++.+=+
T Consensus 159 ~~~i~~----~gGI~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 159 KARIAV----AGGISSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp SCEEEE----ESSCCTTTHHHHHTTCCSEEEE
T ss_pred CCcEEE----ECCCCHHHHHHHHHcCCCEEEE
Confidence 667765 4466667888889999987643
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.12 Score=46.39 Aligned_cols=109 Identities=17% Similarity=0.229 Sum_probs=73.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEEEe--cCCCCcc--C
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEISL--GDTIGVG--T 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~--~ 198 (327)
.+|+++..++++++|++.|+.|++-+...-|.++. -.++|++..+++++ .|+|.+.+ .-..|.- .
T Consensus 110 ~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~---TgvD~LAvaiGt~HG~Y~~~ 186 (286)
T 1gvf_A 110 FAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVEL---TGVDSLAVAIGTAHGLYSKT 186 (286)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHH---HCCSEEEECSSCCSSCCSSC
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHH---HCCCEEEeecCccccCcCCC
Confidence 45668899999999999999999888765433421 13788888777664 68995443 3455531 2
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 199 PGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
|.==.++++.+++..+ +||.+|.=. |..-.....|++.|+..|.
T Consensus 187 p~Ld~~~L~~I~~~~~-vpLVlHGgS--G~~~e~i~~ai~~Gv~KiN 230 (286)
T 1gvf_A 187 PKIDFQRLAEIREVVD-VPLVLHGAS--DVPDEFVRRTIELGVTKVN 230 (286)
T ss_dssp CCCCHHHHHHHHHHCC-SCEEECCCT--TCCHHHHHHHHHTTEEEEE
T ss_pred CccCHHHHHHHHHhcC-CCEEEECCC--CCCHHHHHHHHHCCCeEEE
Confidence 3222345666777765 688887744 6677788899999987654
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.54 Score=41.89 Aligned_cols=209 Identities=13% Similarity=0.098 Sum_probs=122.8
Q ss_pred HHHHHHcCcCEEEe-cCCccc-cCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 4 ASALYKMGCYEISL-GDTIGV-GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 4 ~~~~~~~g~~~i~~-~Dt~G~-~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.|+|.|.+ .|-..- .....+.+.++.+++..+..|+-|++-..+. |+
T Consensus 58 ~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~e------------------------GG- 112 (276)
T 3o1n_A 58 ALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKE------------------------GG- 112 (276)
T ss_dssp HHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCBGGG------------------------TC-
T ss_pred HHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhh------------------------CC-
Confidence 34455578887665 354432 2346788888888888766777777655442 11
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccC-cchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCG-VKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVV 160 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~G-id~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~ 160 (327)
. ...+.++-+. +.+.+++.| +|.+-+-.... -+.+.++++.+++.|.++-+..-+ |
T Consensus 113 -----~-~~~~~~~~~~-ll~~~l~~g~~dyIDvEl~~~---------------~~~~~~l~~~a~~~~~kvI~S~Hd-f 169 (276)
T 3o1n_A 113 -----E-QALTTGQYID-LNRAAVDSGLVDMIDLELFTG---------------DDEVKATVGYAHQHNVAVIMSNHD-F 169 (276)
T ss_dssp -----S-BCCCHHHHHH-HHHHHHHHTCCSEEEEEGGGC---------------HHHHHHHHHHHHHTTCEEEEEEEE-S
T ss_pred -----C-CCCCHHHHHH-HHHHHHhcCCCCEEEEECcCC---------------HHHHHHHHHHHHhCCCEEEEEeec-C
Confidence 1 1122233333 333445555 55544322111 123566788888889887543322 2
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH---hcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT---VIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~---~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
..--+.+++.+..+++.+.|+|.+.|+=+. -++.++.+++....+ ..++.|+..-.=-.. +...-+.+-
T Consensus 170 ----~~tP~~~el~~~~~~~~~~GaDIvKia~~a--~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~MG~~--G~~SRi~~~ 241 (276)
T 3o1n_A 170 ----HKTPAAEEIVQRLRKMQELGADIPKIAVMP--QTKADVLTLLTATVEMQERYADRPIITMSMSKT--GVISRLAGE 241 (276)
T ss_dssp ----SCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHTCCSCCEEEECSGG--GTHHHHCHH
T ss_pred ----CCCcCHHHHHHHHHHHHHcCCCEEEEEecC--CChHHHHHHHHHHHHHHhcCCCCCEEEEECCCc--hhhHHHHHH
Confidence 111245789999999999999999887663 456777777765433 345556554322222 233444455
Q ss_pred HhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 238 EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 238 ~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
..|....-+++ |+ |- +.|+.+++++...|+.
T Consensus 242 ~~GS~vTf~~l---~~-~s---APGQl~~~~l~~~l~~ 272 (276)
T 3o1n_A 242 VFGSAATFGAV---KK-AS---APGAISVADLRTVLTI 272 (276)
T ss_dssp HHTCCEEECBS---SC-CS---STTCCBHHHHHHHHHH
T ss_pred HhCCceEecCC---CC-CC---CCCCCCHHHHHHHHHH
Confidence 66777766665 43 32 4679999999887764
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=96.26 E-value=0.038 Score=49.21 Aligned_cols=94 Identities=16% Similarity=0.090 Sum_probs=56.2
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCH--HHHHHHHHHHHHhcCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTP--GTMRLMLEDVLTVIPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P--~~~~~~~~~~~~~~~~ 215 (327)
..++++.++++|+++.. +. .|. ++.+.+.++.+..... +..+.+..++|..+| ..+.++++.+|+.. +
T Consensus 136 ~~~~~~~~~~~g~~~i~-l~----~p~---t~~~~i~~i~~~~~g~-v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~-~ 205 (268)
T 1qop_A 136 SAPFRQAALRHNIAPIF-IC----PPN---ADDDLLRQVASYGRGY-TYLLSRSGVTGAENRGALPLHHLIEKLKEYH-A 205 (268)
T ss_dssp CHHHHHHHHHTTCEEEC-EE----CTT---CCHHHHHHHHHHCCSC-EEEESSSSCCCSSSCC--CCHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHcCCcEEE-EE----CCC---CCHHHHHHHHhhCCCc-EEEEecCCcCCCccCCCchHHHHHHHHHhcc-C
Confidence 44567788889987531 11 221 4556555555442211 233344567787544 45677888888865 4
Q ss_pred CeEEEeecCCcCcHHHHHH-HHHHhcCceee
Q psy12516 216 DRLAVHCHDTYGQALANIL-TAMEFGISVFD 245 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l-~a~~~G~~~vd 245 (327)
+||.+ +.|....+.. .++.+|||.|=
T Consensus 206 ~pi~v----ggGI~t~e~~~~~~~agAD~vV 232 (268)
T 1qop_A 206 APALQ----GFGISSPEQVSAAVRAGAAGAI 232 (268)
T ss_dssp CCEEE----ESSCCSHHHHHHHHHTTCSEEE
T ss_pred CcEEE----ECCCCCHHHHHHHHHcCCCEEE
Confidence 56666 6688855544 45899998754
|
| >4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.059 Score=50.26 Aligned_cols=147 Identities=14% Similarity=0.130 Sum_probs=87.5
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHH----HHHHhhcC------CCeeEEEecCccchHHHHHHHHH-HcCCc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLML----EDVLTVIP------ADRLAVHCHDTYGQALANILTAM-EFGIS 69 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~----~~~~~~~~------~~~~~~H~h~~~g~~~~~~~~a~-~aG~~ 69 (327)
++++...++|+|.|.+.|+. |.++|...++.+ +.+.+.+. .+++-.|+.+. + ..+..+ +.|++
T Consensus 201 ~y~~~qi~aGad~i~ifDs~~~~Lsp~~f~ef~~Py~k~i~~~l~~~~~g~~~pvi~f~~g~-~----~~l~~l~~~g~d 275 (368)
T 4exq_A 201 AYLNAQIEAGAQAVMIFDTWGGALADGAYQRFSLDYIRRVVAQLKREHDGARVPAIAFTKGG-G----LWLEDLAATGVD 275 (368)
T ss_dssp HHHHHHHHHTCSEEEEEETTGGGSCTTHHHHHTHHHHHHHHHTSCCEETTEECCEEEEETTC-G----GGHHHHHTSSCS
T ss_pred HHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCcEEEEcCCc-H----HHHHHHHHhCCC
Confidence 46677789999999988876 889999976653 23333332 14554455443 2 234444 78998
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.+.. .+ ..++++....+.. ..+.-++|...++ .+.+++.+.++++++.....
T Consensus 276 ~i~~-----d~---------~~dl~~ak~~~g~~~~l~Gnldp~~L~-------------gt~e~I~~~v~~~l~~~g~~ 328 (368)
T 4exq_A 276 AVGL-----DW---------TVNLGRARERVAGRVALQGNLDPTILF-------------APPEAIRAEARAVLDSYGNH 328 (368)
T ss_dssp EEEC-----CT---------TSCHHHHHHHHTTSSEEEEEECGGGGG-------------SCHHHHHHHHHHHHHHHCSC
T ss_pred EEee-----CC---------CCCHHHHHHHhCCCEEEEECCCHHHhC-------------CCHHHHHHHHHHHHHHhCCC
Confidence 8752 11 2466666555533 2444456554222 34556666777777765432
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCc
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGC 185 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~ 185 (327)
+.++. + .||-....+++|.+..+.+.+.++|.
T Consensus 329 ~g~I~-n----~Ghgi~p~tp~Env~a~veav~~~~~ 360 (368)
T 4exq_A 329 PGHVF-N----LGHGISQFTPPEHVAELVDEVHRHSR 360 (368)
T ss_dssp SCEEE-E----ESSCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred CCEEE-e----CCCCCCCCcCHHHHHHHHHHHHHhCH
Confidence 33332 2 34443345889999988888877653
|
| >1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.18 Score=46.85 Aligned_cols=145 Identities=14% Similarity=0.100 Sum_probs=88.0
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHH--------HHHHHHH-hhcC----CCeeEEEecCccchHHHHHHHHH-Hc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMR--------LMLEDVL-TVIP----ADRLAVHCHDTYGQALANILTAM-EF 66 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~--------~~~~~~~-~~~~----~~~~~~H~h~~~g~~~~~~~~a~-~a 66 (327)
++++...++|+|.|.+.|+. |.++|...+ ++++.++ +..| .+++-+|+-.+ + ..+..+ +.
T Consensus 201 ~~~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~-~----~~l~~l~~~ 275 (367)
T 1r3s_A 201 PYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDG-H----FALEELAQA 275 (367)
T ss_dssp HHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC-G----GGHHHHTTS
T ss_pred HHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCc-H----HHHHHHHhc
Confidence 46677889999999999976 778998744 4455565 4422 46777776555 2 244555 78
Q ss_pred CCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy12516 67 GISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA 145 (327)
Q Consensus 67 G~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a 145 (327)
|++.+..- ...+++++...+.. ..+.-++|...++ .+.+++.+.++++++..
T Consensus 276 g~d~i~~d--------------~~~dl~~a~~~~g~~~~l~Gnldp~~L~-------------gt~e~i~~~v~~~l~~~ 328 (367)
T 1r3s_A 276 GYEVVGLD--------------WTVAPKKARECVGKTVTLQGNLDPCALY-------------ASEEEIGQLVKQMLDDF 328 (367)
T ss_dssp SCSEEECC--------------TTSCHHHHHHHHCSSSEEEEEECGGGGG-------------SCHHHHHHHHHHHHHHH
T ss_pred CCCEEEeC--------------CCCCHHHHHHHcCCCeEEEeCCChHHhc-------------CCHHHHHHHHHHHHHHh
Confidence 98887631 12456666554432 2344456652221 24556566777777764
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
.. |.++. ..||-....+++|.+..+.+.+.+++
T Consensus 329 g~-~g~I~-----~~ghgi~~~~p~env~a~v~~v~~~~ 361 (367)
T 1r3s_A 329 GP-HRYIA-----NLGHGLYPDMDPEHVGAFVDAVHKHS 361 (367)
T ss_dssp CS-SSEEE-----EESSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CC-CCeee-----cCCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 33 33332 13443334588999998888887654
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=95.90 E-value=0.78 Score=39.89 Aligned_cols=208 Identities=14% Similarity=0.101 Sum_probs=119.0
Q ss_pred HHHHHHcCcCEEEe-cCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCC
Q psy12516 4 ASALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCP 82 (327)
Q Consensus 4 ~~~~~~~g~~~i~~-~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p 82 (327)
++++.+.|+|.|.+ .|-....++..+.+.+..+++..+..|+-|++-..+. + |.
T Consensus 23 ~~~~~~~~~D~vElRvD~l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~e---------------------G--G~-- 77 (238)
T 1sfl_A 23 KINHRIDAIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQ---------------------G--GY-- 77 (238)
T ss_dssp HHHHTTTTCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGG---------------------T--SC--
T ss_pred HHHhhhcCCCEEEEEecccccCCHHHHHHHHHHHHHhccCCCEEEEeecccc---------------------C--CC--
Confidence 45556778886654 3443333577788888888877655777776654432 0 11
Q ss_pred CCCCccCCCcHHHHHHHhhhhhccc-Ccchhhhhhhh--hHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeee
Q psy12516 83 YARGASGNVATEDLVYMLEGKSMQC-GVKEIAVFASA--SEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCV 159 (327)
Q Consensus 83 ~~~~~~gn~~~e~v~~~l~~~~~~~-Gid~i~l~~~~--sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~ 159 (327)
...+.++-+.+++ .+++. ++|.+-+-... . -+...++++.+++.|.++-+..-+
T Consensus 78 ------~~~~~~~~~~ll~-~~~~~~~~d~iDvEl~~~~~---------------~~~~~~l~~~~~~~~~kvI~S~Hd- 134 (238)
T 1sfl_A 78 ------GQFTNDSYLNLIS-DLANINGIDMIDIEWQADID---------------IEKHQRIITHLQQYNKEVIISHHN- 134 (238)
T ss_dssp ------BCCCHHHHHHHHH-HGGGCTTCCEEEEECCTTSC---------------HHHHHHHHHHHHHTTCEEEEEEEE-
T ss_pred ------CCCCHHHHHHHHH-HHHHhCCCCEEEEEccCCCC---------------hHHHHHHHHHHHhcCCEEEEEecC-
Confidence 1223344444333 44554 45655432211 1 233556788888888887543222
Q ss_pred ccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh--cCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 160 VGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV--IPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 160 ~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~--~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
| ..--+.+++.+.++++.+.|+|.+.|+=+. -++.++..+++...+. .+..|+..-. --.++...-+.+-
T Consensus 135 f----~~tp~~~el~~~~~~~~~~gaDivKia~~a--~~~~D~l~ll~~~~~~~~~~~~P~I~~~--MG~~G~~SRi~~~ 206 (238)
T 1sfl_A 135 F----ESTPPLDELQFIFFKMQKFNPEYVKLAVMP--HNKNDVLNLLQAMSTFSDTMDCKVVGIS--MSKLGLISRTAQG 206 (238)
T ss_dssp S----SCCCCHHHHHHHHHHHHTTCCSEEEEEECC--SSHHHHHHHHHHHHHHHHHCSSEEEEEE--CTGGGHHHHHTGG
T ss_pred C----CCCcCHHHHHHHHHHHHHcCCCEEEEEecC--CCHHHHHHHHHHHHHHhhcCCCCEEEEE--CCCCchHHHHHHH
Confidence 1 111235789999999999999999888774 3477888877655432 2344544321 1122334444445
Q ss_pred HhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 238 EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 238 ~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
..|....-+++ +. +- +.|+.+++++...|+
T Consensus 207 ~~GS~~tf~~l---~~-~s---APGQl~~~el~~~l~ 236 (238)
T 1sfl_A 207 VFGGALTYGCI---GE-PQ---APGQIDVTDLKAQVT 236 (238)
T ss_dssp GGTBCEEEEBS---SC-CS---STTCCBHHHHHHHHT
T ss_pred HhCCCeeecCC---CC-CC---CCCCCCHHHHHHHHH
Confidence 56666655555 33 22 467999999987775
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=95.90 E-value=0.026 Score=49.66 Aligned_cols=167 Identities=16% Similarity=0.073 Sum_probs=93.0
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
+.++++.+.|+| .+.++| |...|.-. ...++.+++..|+.++..|.+-..-.. -+-.+.++|++++-+-.
T Consensus 44 ~~i~~l~~~G~d~lHvDVmD--g~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~--~i~~~~~aGAd~itvH~-- 117 (246)
T 3inp_A 44 DDVKAVLAAGADNIHFDVMD--NHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDA--LIESFAKAGATSIVFHP-- 117 (246)
T ss_dssp HHHHHHHHTTCCCEEEEEEB--SSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHH--HHHHHHHHTCSEEEECG--
T ss_pred HHHHHHHHcCCCEEEEEecC--CCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHH--HHHHHHHcCCCEEEEcc--
Confidence 346778889999 678888 55433221 245777888887788899988443211 12334467777766321
Q ss_pred CCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy12516 78 LGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYIS 157 (327)
Q Consensus 78 lg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~ 157 (327)
| . . +.+.++++.+|+.|+++.+.+.
T Consensus 118 --E------a-~----------------------------------------------~~~~~~i~~ir~~G~k~Gvaln 142 (246)
T 3inp_A 118 --E------A-S----------------------------------------------EHIDRSLQLIKSFGIQAGLALN 142 (246)
T ss_dssp --G------G-C----------------------------------------------SCHHHHHHHHHTTTSEEEEEEC
T ss_pred --c------c-c----------------------------------------------hhHHHHHHHHHHcCCeEEEEec
Confidence 1 0 0 0123345666777887765332
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhc----CCCeEEEeecCCcCcH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVI----PADRLAVHCHDTYGQA 229 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~----~~~~l~~H~Hn~~g~a 229 (327)
| .++.+.+.++.. .+|.|.+ +...|.....+..+.++.+|+.. .+.+|++ |-|..
T Consensus 143 -----p---~Tp~e~l~~~l~-----~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~V----DGGI~ 205 (246)
T 3inp_A 143 -----P---ATGIDCLKYVES-----NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEI----DGGVN 205 (246)
T ss_dssp -----T---TCCSGGGTTTGG-----GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEE----ESSCC
T ss_pred -----C---CCCHHHHHHHHh-----cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEE----ECCcC
Confidence 1 133334333322 3565543 33334322223344455555543 2345655 66777
Q ss_pred HHHHHHHHHhcCceeee
Q psy12516 230 LANILTAMEFGISVFDS 246 (327)
Q Consensus 230 ~an~l~a~~~G~~~vd~ 246 (327)
..|.-.+.++||+.+=+
T Consensus 206 ~~ti~~~~~aGAD~~V~ 222 (246)
T 3inp_A 206 PYNIAEIAVCGVNAFVA 222 (246)
T ss_dssp TTTHHHHHTTTCCEEEE
T ss_pred HHHHHHHHHcCCCEEEE
Confidence 88889999999998643
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.073 Score=48.17 Aligned_cols=112 Identities=20% Similarity=0.285 Sum_probs=80.4
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEEE--ecCCCCccC-
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEIS--LGDTIGVGT- 198 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i~--l~Dt~G~~~- 198 (327)
+.+|+++..++++++|++.|+.|++-+...-|.++. -.++|++..+++++ .|+|.+. +.-+.|.-.
T Consensus 107 p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~---TgvD~LAvaiGt~HG~Yk~ 183 (305)
T 1rvg_A 107 DFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMER---TGADYLAVAIGTSHGAYKG 183 (305)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHH---HCCSEEEECSSCCSSSBCS
T ss_pred CHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHH---HCCCEEEEecCccccccCC
Confidence 456779999999999999999999888875443432 14788888877765 4899544 446666544
Q ss_pred ---HHHHHHHHHHHHHhcCCCeEEEeecC-------------------CcCcHHHHHHHHHHhcCceee
Q psy12516 199 ---PGTMRLMLEDVLTVIPADRLAVHCHD-------------------TYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 ---P~~~~~~~~~~~~~~~~~~l~~H~Hn-------------------~~g~a~an~l~a~~~G~~~vd 245 (327)
|.==.++++.+++.+| +||.+|.=. .+|........|++.|+..|.
T Consensus 184 ~g~p~L~~~~L~~I~~~~~-vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~GV~KiN 251 (305)
T 1rvg_A 184 KGRPFIDHARLERIARLVP-APLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKIN 251 (305)
T ss_dssp SSSCCCCHHHHHHHHHHCC-SCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEE
T ss_pred CCCCccCHHHHHHHHHhcC-CCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHHHHHHHHHCCCeEEE
Confidence 3222346777888887 799999866 457777788888888876654
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.82 E-value=0.26 Score=45.30 Aligned_cols=68 Identities=21% Similarity=0.290 Sum_probs=49.5
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+.++++.++|+|.|++. +.+... .+-+..+++..+ +|+..-.|-++-.+ +.|+++|++-+-..=+.+|
T Consensus 50 ~Qi~~l~~aG~diVRva----vp~~~~-a~al~~I~~~~~-vPlvaDiHf~~~la----l~a~e~G~dklRINPGNig 117 (366)
T 3noy_A 50 NQIKRLYEAGCEIVRVA----VPHKED-VEALEEIVKKSP-MPVIADIHFAPSYA----FLSMEKGVHGIRINPGNIG 117 (366)
T ss_dssp HHHHHHHHTTCCEEEEE----CCSHHH-HHHHHHHHHHCS-SCEEEECCSCHHHH----HHHHHTTCSEEEECHHHHS
T ss_pred HHHHHHHHcCCCEEEeC----CCChHH-HHHHHHHHhcCC-CCEEEeCCCCHHHH----HHHHHhCCCeEEECCcccC
Confidence 46788999999988883 334343 566788888876 89999999888765 4488999998664333444
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=95.62 E-value=0.48 Score=41.59 Aligned_cols=92 Identities=15% Similarity=0.211 Sum_probs=54.3
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEE---ecCCCCc--cCHHHHHHHHHHHHHh
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEIS---LGDTIGV--GTPGTMRLMLEDVLTV 212 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~---l~Dt~G~--~~P~~~~~~~~~~~~~ 212 (327)
..++++.+++.|+.....+ +| ..+.+.+..+. +.+.+.++ +..++|. ..+....++++.+++.
T Consensus 132 ~~~~~~~~~~~g~~~i~~~-----a~---~t~~e~~~~~~----~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~ 199 (262)
T 1rd5_A 132 AHSLWSEAKNNNLELVLLT-----TP---AIPEDRMKEIT----KASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKV 199 (262)
T ss_dssp HHHHHHHHHHTTCEECEEE-----CT---TSCHHHHHHHH----HHCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCceEEEE-----CC---CCCHHHHHHHH----hcCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhh
Confidence 3455667888898753211 12 23444444333 23333333 3344565 3345677788999886
Q ss_pred cCCCeEEEeecCCcCcH-HHHHHHHHHhcCceeee
Q psy12516 213 IPADRLAVHCHDTYGQA-LANILTAMEFGISVFDS 246 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd~ 246 (327)
. ++||.+ ..|.. ..|....+++|++.|-+
T Consensus 200 ~-~~pI~v----gGGI~~~e~~~~~~~~GAdgvvV 229 (262)
T 1rd5_A 200 T-NKPVAV----GFGISKPEHVKQIAQWGADGVII 229 (262)
T ss_dssp C-SSCEEE----ESCCCSHHHHHHHHHTTCSEEEE
T ss_pred c-CCeEEE----ECCcCCHHHHHHHHHcCCCEEEE
Confidence 5 356666 66888 66777777889998654
|
| >1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 | Back alignment and structure |
|---|
Probab=94.94 E-value=0.5 Score=43.43 Aligned_cols=145 Identities=17% Similarity=0.118 Sum_probs=83.5
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHH--------HHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLM--------LEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~--------~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...++|+|.|.+.|+. |.++|...++. ++.+++..|++++ +|+-...+ ..+..+ +.|++.+
T Consensus 197 ~~~~~~~~aGad~iqi~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~~~~~~~-ih~c~g~~----~~l~~l~~~g~d~~ 271 (353)
T 1j93_A 197 KYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPL-ILYASGSG----GLLERLPLTGVDVV 271 (353)
T ss_dssp HHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCE-EEECSSCT----TTGGGGGGGCCSEE
T ss_pred HHHHHHHHhCCCEEEEeCcccccCCHHHHHHHhHHHHHHHHHHHHHhCCCCCE-EEECCChH----HHHHHHHhcCCCEE
Confidence 46677889999999999976 57889875544 4455544334555 45432222 233344 6788776
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
.. .. ..+++++...+.. ..+.-++|... + .-+.+++.++++++++.... +-
T Consensus 272 ~~-----d~---------~~d~~~~~~~~g~~~~l~Gnldp~~-l------------~~~~e~i~~~v~~~l~~~~~-~g 323 (353)
T 1j93_A 272 SL-----DW---------TVDMADGRRRLGPNVAIQGNVDPGV-L------------FGSKEFITNRINDTVKKAGK-GK 323 (353)
T ss_dssp EC-----CT---------TSCHHHHHHHTCSSSEEECCBCGGG-G------------GSCHHHHHHHHHHHHHHHCS-SS
T ss_pred Ee-----CC---------CCCHHHHHHHcCCCeEEEecCCHHH-H------------cCCHHHHHHHHHHHHHHhCC-CC
Confidence 52 11 2356655544432 23334455421 1 23556666677777776533 22
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
.+ ...||-....++++.+..+.+.+.++|
T Consensus 324 ~I-----~~~g~gi~~~~~~enl~a~ve~v~~~~ 352 (353)
T 1j93_A 324 HI-----LNLGHGIKVGTPEENFAHFFEIAKGLR 352 (353)
T ss_dssp EE-----BCBSSCCCTTCCHHHHHHHHHHHHTCC
T ss_pred EE-----EeCCCCCCCCCCHHHHHHHHHHHHHhc
Confidence 22 123444444688899999988887764
|
| >3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A | Back alignment and structure |
|---|
Probab=94.90 E-value=2.1 Score=38.65 Aligned_cols=213 Identities=14% Similarity=0.081 Sum_probs=112.0
Q ss_pred HHHHHHcCcCEEEe-cCCc----------cccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchH---HHHHHHHHHcCC
Q psy12516 4 ASALYKMGCYEISL-GDTI----------GVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQA---LANILTAMEFGI 68 (327)
Q Consensus 4 ~~~~~~~g~~~i~~-~Dt~----------G~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~---~~~~~~a~~aG~ 68 (327)
++.+.++|.+.|.+ .|.. +..|..++...++.+.+..+ ..|+..-.=.-+|.. ..++...+++|+
T Consensus 38 A~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGa 117 (307)
T 3lye_A 38 ARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLDPFGPPLIADMDTGYGGPIMVARTVEHYIRSGV 117 (307)
T ss_dssp HHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccCCCCCcEEEECCCCCCCHHHHHHHHHHHHHcCC
Confidence 56677889998888 4543 45566677777777776554 355555444444432 122233335777
Q ss_pred cEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 69 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 69 ~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.-+..-=. .+. -+.|+.. -+-=.+.++..++++...+...+.
T Consensus 118 agv~iEDq-~~~-----k~cgh~~--------------------------------gk~l~~~~e~~~rI~Aa~~A~~~~ 159 (307)
T 3lye_A 118 AGAHLEDQ-ILT-----KRCGHLS--------------------------------GKKVVSRDEYLVRIRAAVATKRRL 159 (307)
T ss_dssp CEEEECCB-CCC-----C----------------------------------------CBCCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEcCC-CCC-----cccCCCC--------------------------------CCeecCHHHHHHHHHHHHHHHHhc
Confidence 66541110 000 0111110 000012334456666666665555
Q ss_pred CCeEEEEEeeeccCCCCC-CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE--eecC-
Q psy12516 149 GIRVRGYISCVVGCPYEG-AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV--HCHD- 224 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~-r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~--H~Hn- 224 (327)
|..+.++-.. +.. ....++.++-++...++|+|.|.+. |.-+++++.++.+.+. .+|+-+ -...
T Consensus 160 ~~d~~I~ART-----Da~~~~gldeAi~Ra~ay~eAGAD~ifi~---~~~~~~~~~~i~~~~~----~~Pv~~n~~~~g~ 227 (307)
T 3lye_A 160 RSDFVLIART-----DALQSLGYEECIERLRAARDEGADVGLLE---GFRSKEQAAAAVAALA----PWPLLLNSVENGH 227 (307)
T ss_dssp TCCCEEEEEE-----CCHHHHCHHHHHHHHHHHHHTTCSEEEEC---CCSCHHHHHHHHHHHT----TSCBEEEEETTSS
T ss_pred CCCeEEEEec-----hhhhccCHHHHHHHHHHHHHCCCCEEEec---CCCCHHHHHHHHHHcc----CCceeEEeecCCC
Confidence 5443222111 110 1235567777778889999999875 5677888887777664 234432 1111
Q ss_pred CcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 225 TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 225 ~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
+..+ ..-...+.|+++|-.....+ |+-...+++.+..|++.|
T Consensus 228 ~p~~---t~~eL~~lGv~~v~~~~~~~--------raa~~a~~~~~~~l~~~g 269 (307)
T 3lye_A 228 SPLI---TVEEAKAMGFRIMIFSFATL--------APAYAAIRETLVRLRDHG 269 (307)
T ss_dssp SCCC---CHHHHHHHTCSEEEEETTTH--------HHHHHHHHHHHHHHHHHS
T ss_pred CCCC---CHHHHHHcCCeEEEEChHHH--------HHHHHHHHHHHHHHHHhC
Confidence 1112 23455577999884433222 445667777777777643
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=94.84 E-value=1.3 Score=38.05 Aligned_cols=94 Identities=16% Similarity=0.108 Sum_probs=56.8
Q ss_pred HHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCceeeeccc
Q psy12516 173 VTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd~s~~ 249 (327)
..+.++.+.+.|++.|.+ .+..|..... -.+.++.+++.. ++|+..= -|.. ..+...++++|++.|=..-.
T Consensus 156 ~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~-~~~~i~~l~~~~-~~pvia~----GGi~~~~~~~~~~~~Ga~~v~vgsa 229 (253)
T 1h5y_A 156 AVKWAKEVEELGAGEILLTSIDRDGTGLGY-DVELIRRVADSV-RIPVIAS----GGAGRVEHFYEAAAAGADAVLAASL 229 (253)
T ss_dssp HHHHHHHHHHHTCSEEEEEETTTTTTCSCC-CHHHHHHHHHHC-SSCEEEE----SCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred HHHHHHHHHhCCCCEEEEecccCCCCcCcC-CHHHHHHHHHhc-CCCEEEe----CCCCCHHHHHHHHHcCCcHHHHHHH
Confidence 455677888899998887 3433332211 124456666654 3455542 3554 37778888899887543211
Q ss_pred cCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 250 GLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 250 G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
=+ .+..+++++...|++.|++..
T Consensus 230 l~---------~~~~~~~~~~~~l~~~g~~~~ 252 (253)
T 1h5y_A 230 FH---------FRVLSIAQVKRYLKERGVEVR 252 (253)
T ss_dssp HH---------TTSSCHHHHHHHHHHTTCBCC
T ss_pred HH---------cCCCCHHHHHHHHHHcCCCCC
Confidence 11 123468999999999888753
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.49 Score=42.33 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=73.5
Q ss_pred HHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHHHHHHHhcCCC--e--
Q psy12516 145 ALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIPAD--R-- 217 (327)
Q Consensus 145 a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~~~~~~~~~~~--~-- 217 (327)
.+..++++...+. .|. +..+.+.-..-++.+.+.|+|.|-+.=-.|. -.-..+.+.+..+++..+.. .
T Consensus 105 L~~s~V~V~tVig----FP~-G~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVI 179 (288)
T 3oa3_A 105 LQGTQVGVTCVIG----FHE-GTYSTDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVI 179 (288)
T ss_dssp TTTSSCEEEEEES----TTT-SCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred cCCCCCeEEEEeC----CCC-CCCcHHHHHHHHHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEE
Confidence 3455777765443 343 3455565566677888899999887766776 34577888888888876542 2
Q ss_pred EEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHH
Q psy12516 218 LAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 273 (327)
Q Consensus 218 l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l 273 (327)
|+.-..++--. ...+..|+++|+|+|-+| .|++. +++.+|++..+.
T Consensus 180 lEt~~Lt~eei-~~A~~ia~eaGADfVKTS-TGf~~--------~GAT~edv~lmr 225 (288)
T 3oa3_A 180 LETSQLTADEI-IAGCVLSSLAGADYVKTS-TGFNG--------PGASIENVSLMS 225 (288)
T ss_dssp CCGGGCCHHHH-HHHHHHHHHTTCSEEECC-CSSSS--------CCCCHHHHHHHH
T ss_pred EECCCCCHHHH-HHHHHHHHHcCCCEEEcC-CCCCC--------CCCCHHHHHHHH
Confidence 22222222222 234677889999999999 66653 567888765443
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.53 Score=41.49 Aligned_cols=118 Identities=18% Similarity=0.184 Sum_probs=77.9
Q ss_pred HHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCeEE--
Q psy12516 145 ALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRLA-- 219 (327)
Q Consensus 145 a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~-- 219 (327)
.+..++++...+. .|.. ..+.+.-..-++.+.+.|+|.|-+.=-.|.+ .-..+.+-+..+++..++.++-
T Consensus 90 L~gs~v~v~tVig----FP~G-~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVI 164 (260)
T 3r12_A 90 LEGTDVKVVTVVG----FPLG-ANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVI 164 (260)
T ss_dssp HTTSCCEEEEEES----TTTC-CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred hcCCCCeEEEEec----CCCC-CCcHHHHHHHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEE
Confidence 3456777765544 3433 4555655656777888999999887777764 5577888888888876554432
Q ss_pred --EeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 220 --VHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 220 --~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
.-..++--. ...+..|.++|+|+|-+| .|.+ +|++.+|++-.+.+..|
T Consensus 165 lEt~~Lt~eei-~~A~~ia~eaGADfVKTS-TGf~--------~~GAT~edV~lm~~~vg 214 (260)
T 3r12_A 165 IETCYLDTEEK-IAACVISKLAGAHFVKTS-TGFG--------TGGATAEDVHLMKWIVG 214 (260)
T ss_dssp CCGGGCCHHHH-HHHHHHHHHTTCSEEECC-CSSS--------SCCCCHHHHHHHHHHHC
T ss_pred EeCCCCCHHHH-HHHHHHHHHhCcCEEEcC-CCCC--------CCCCCHHHHHHHHHHhC
Confidence 222222222 345677889999999998 5554 35788888776666433
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=94.55 E-value=2.2 Score=37.40 Aligned_cols=122 Identities=12% Similarity=0.060 Sum_probs=76.5
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh--cCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV--IPA 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~--~~~ 215 (327)
..++++.+++.|.++-+..-+ | ..--+.+++.+.++++.+.|+|.+.|+=+. -++.++..+++...+. .+.
T Consensus 128 ~~~l~~~~~~~~~kvI~S~Hd-f----~~tP~~~el~~~~~~~~~~gaDivKia~~a--~s~~D~l~ll~~~~~~~~~~~ 200 (257)
T 2yr1_A 128 IADVRRMTEECSVWLVVSRHY-F----DGTPRKETLLADMRQAERYGADIAKVAVMP--KSPEDVLVLLQATEEARRELA 200 (257)
T ss_dssp HHHHHHHHHHTTCEEEEEEEE-S----SCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHhCCCEEEEEecC-C----CCCcCHHHHHHHHHHHHhcCCCEEEEEecc--CCHHHHHHHHHHHHHHhccCC
Confidence 445677888888887543222 1 111235789999999999999999888774 3477888877655432 234
Q ss_pred CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 216 DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
.|+..-.=-.. +...-+.+-..|....-+++ ++ +- +.|+.+++++...|+.
T Consensus 201 ~P~I~~~MG~~--G~~SRi~~~~~GS~~Tf~~l---~~-~s---APGQl~~~el~~~l~~ 251 (257)
T 2yr1_A 201 IPLITMAMGGL--GAITRLAGWLFGSAVTFAVG---NQ-SS---APGQIPIDDVRTVLSI 251 (257)
T ss_dssp SCEEEEECTTT--THHHHHHGGGGTBCEEECBS---SS-CS---STTCCBHHHHHHHHHH
T ss_pred CCEEEEECCCC--cchHHHHHHHhCCceEecCC---CC-CC---CCCCCCHHHHHHHHHH
Confidence 45544222222 24444555566666655555 33 22 4679999999887764
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.23 Score=43.06 Aligned_cols=92 Identities=9% Similarity=0.034 Sum_probs=59.7
Q ss_pred HHHHH---HHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC-cCEEEe----cCCCCccCHHHHHHHHHHHH
Q psy12516 139 SEVVS---TALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG-CYEISL----GDTIGVGTPGTMRLMLEDVL 210 (327)
Q Consensus 139 ~~~v~---~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g-~~~i~l----~Dt~G~~~P~~~~~~~~~~~ 210 (327)
.++++ .+++.|.++.+.+. | .++.+.+ +.+.+.| +|.|.+ +-..|...+....+.++.+|
T Consensus 101 ~~~i~~~~~i~~~G~k~gvaln-----p---~tp~~~~----~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr 168 (227)
T 1tqx_A 101 ERCIQLAKEIRDNNLWCGISIK-----P---KTDVQKL----VPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLR 168 (227)
T ss_dssp HHHHHHHHHHHTTTCEEEEEEC-----T---TSCGGGG----HHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCeEEEEeC-----C---CCcHHHH----HHHhhcCCcCEEEEeeeccCCCCcccchHHHHHHHHHH
Confidence 34556 88999999876442 2 1343443 3445555 787722 22334444556666788888
Q ss_pred HhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 211 TVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 211 ~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+..++.+|++ |-|....|.-.+.++|++.+=+
T Consensus 169 ~~~~~~~I~V----dGGI~~~ti~~~~~aGAd~~V~ 200 (227)
T 1tqx_A 169 KKYKNLNIQV----DGGLNIETTEISASHGANIIVA 200 (227)
T ss_dssp HHCTTCEEEE----ESSCCHHHHHHHHHHTCCEEEE
T ss_pred HhccCCeEEE----ECCCCHHHHHHHHHcCCCEEEE
Confidence 8776556655 7788889999999999998644
|
| >1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.51 Score=44.01 Aligned_cols=98 Identities=9% Similarity=0.087 Sum_probs=70.5
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec-CCCCccCHHHHHHH--HHHHHHhcCC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG-DTIGVGTPGTMRLM--LEDVLTVIPA 215 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~~~~~--~~~~~~~~~~ 215 (327)
.++++++.+.|..|- ++. +-.+.+++...++.+.+.|...|.|+ -+.+.-+|....++ +..+++.+|.
T Consensus 148 ~pLL~~va~~gKPVi--LSt-------GmaTl~Ei~~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~ 218 (385)
T 1vli_A 148 LPLLKYVARLNRPMI--FST-------AGAEISDVHEAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPE 218 (385)
T ss_dssp HHHHHHHHTTCSCEE--EEC-------TTCCHHHHHHHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTT
T ss_pred HHHHHHHHhcCCeEE--EEC-------CCCCHHHHHHHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCC
Confidence 345777777888875 222 23589999999999999998544443 35555556555554 7889999877
Q ss_pred CeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 216 DRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.|+++--|-. |- ...+++|+.+||+.|+.=
T Consensus 219 lpVG~SdHt~-G~-~~~~~AAvAlGA~iIEkH 248 (385)
T 1vli_A 219 AVIGFSDHSE-HP-TEAPCAAVRLGAKLIEKH 248 (385)
T ss_dssp SEEEEEECCS-SS-SHHHHHHHHTTCSEEEEE
T ss_pred CCEEeCCCCC-Cc-hHHHHHHHHcCCCEEEeC
Confidence 8999877753 32 778899999999987653
|
| >3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=94.39 E-value=0.53 Score=43.25 Aligned_cols=146 Identities=15% Similarity=0.119 Sum_probs=81.6
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHH----HHHHhhcC------CCeeEEEecCccchHHHHHHHHH-HcCCc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLML----EDVLTVIP------ADRLAVHCHDTYGQALANILTAM-EFGIS 69 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~----~~~~~~~~------~~~~~~H~h~~~g~~~~~~~~a~-~aG~~ 69 (327)
++++...++|+|.|.+.|+. |.++|...++.+ +.+.+.+. .+++-.|+.++ ...+..+ +.|++
T Consensus 191 ~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~~~~ii~~~~g~-----~~~l~~l~~~g~d 265 (354)
T 3cyv_A 191 LYLNAQIKAGAQAVMIFDTWGGVLTGRDYQQFSLYYMHKIVDGLLRENDGRRVPVTLFTKGG-----GQWLEAMAETGCD 265 (354)
T ss_dssp HHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHSCSEETTEECCEEEECTTT-----TTTHHHHHTTSCS
T ss_pred HHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHhcCCCCCCEEEECCCH-----HHHHHHHHhcCCC
Confidence 46777889999999998866 788898766553 23333332 24433333222 2344444 78998
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.+.. .. ..+++++...+.. ..+.-++|...+ ..+.++..+.++++++.....
T Consensus 266 ~i~~-----d~---------~~dl~~~~~~~g~~~~l~Gn~dp~~l-------------~~t~e~i~~~v~~~l~~~g~~ 318 (354)
T 3cyv_A 266 ALGL-----DW---------TTDIADARRRVGNKVALQGNMDPSML-------------YAPPARIEEEVATILAGFGHG 318 (354)
T ss_dssp EEEC-----CT---------TSCHHHHHHHHTTTSEEECCBCGGGG-------------GSCHHHHHHHHHHHHTTTTTS
T ss_pred EEEe-----CC---------CCCHHHHHHHhCCCeEEEecCChHHh-------------CCCHHHHHHHHHHHHHHhCCC
Confidence 8872 11 2456666554432 234445664222 234555556666666543222
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
+-++ - ..||-....+++|.+..+.+.+.+++
T Consensus 319 ~g~I----~-~~g~gi~~~~p~env~a~v~~v~~~~ 349 (354)
T 3cyv_A 319 EGHV----F-NLGHGIHQDVPPEHAGVFVEAVHRLS 349 (354)
T ss_dssp SCEE----B-CBSSCCCTTSCHHHHHHHHHHHHHHH
T ss_pred CCeE----E-ecCCCCCCCCCHHHHHHHHHHHHHHh
Confidence 2222 1 13343334578888888888877654
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=94.37 E-value=2.3 Score=38.55 Aligned_cols=212 Identities=12% Similarity=0.051 Sum_probs=118.1
Q ss_pred HHHHHHcCcCEEEecCC-c----------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccch---HHHHHHHHHHcCCc
Q psy12516 4 ASALYKMGCYEISLGDT-I----------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ---ALANILTAMEFGIS 69 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt-~----------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~---~~~~~~~a~~aG~~ 69 (327)
++.+.++|.|.|.+.|. . +..+..++...++.+.+..|+.++..-.=.-+|. ...++...+++|+.
T Consensus 52 A~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaa 131 (318)
T 1zlp_A 52 AAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELISAGAK 131 (318)
T ss_dssp HHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHHHHHHHHcCCc
Confidence 56678899999999994 2 5677888888888898888667777766666662 23344555578888
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG 149 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G 149 (327)
-+..-=. ... -+.|+.. |-. +.+ .++..++++.+++.....+
T Consensus 132 gv~iED~-~~~-----k~cgH~~---------------gk~----L~p-------------~~e~~~rI~Aa~~A~~~~~ 173 (318)
T 1zlp_A 132 GVFLEDQ-VWP-----KKCGHMR---------------GKA----VVP-------------AEEHALKIAAAREAIGDSD 173 (318)
T ss_dssp EEEEECB-CSS-----CCCSSSS---------------CCC----BCC-------------HHHHHHHHHHHHHHHTTSC
T ss_pred EEEECCC-CCC-----ccccCCC---------------CCc----cCC-------------HHHHHHHHHHHHHhcccCC
Confidence 7552111 100 0111111 000 011 1122444444444444445
Q ss_pred CeEEEEEeeeccCCCCC-CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc
Q psy12516 150 IRVRGYISCVVGCPYEG-AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ 228 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~-r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~ 228 (327)
+.+.+- .+.. ....+..++-++.+.++|+|.|.+- |.-+++++.++. +.++ +|+-+-.-. +|.
T Consensus 174 ~~I~AR-------tda~a~~gl~~ai~Ra~Ay~eAGAd~i~~e---~~~~~e~~~~i~----~~l~-~P~lan~~~-~g~ 237 (318)
T 1zlp_A 174 FFLVAR-------TDARAPHGLEEGIRRANLYKEAGADATFVE---APANVDELKEVS----AKTK-GLRIANMIE-GGK 237 (318)
T ss_dssp CEEEEE-------ECTHHHHHHHHHHHHHHHHHHTTCSEEEEC---CCCSHHHHHHHH----HHSC-SEEEEEECT-TSS
T ss_pred cEEEEe-------eHHhhhcCHHHHHHHHHHHHHcCCCEEEEc---CCCCHHHHHHHH----HhcC-CCEEEEecc-CCC
Confidence 555421 1110 1112567777788889999999875 234455555444 4444 465432211 111
Q ss_pred -HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 229 -ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 229 -a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
..-+.-..-+.|+++|-.....+ |+-+..+++++..|++.|
T Consensus 238 ~~~~~~~eL~~lGv~~v~~~~~~~--------raa~~a~~~~~~~l~~~g 279 (318)
T 1zlp_A 238 TPLHTPEEFKEMGFHLIAHSLTAV--------YATARALVNIMKILKEKG 279 (318)
T ss_dssp SCCCCHHHHHHHTCCEEEECSHHH--------HHHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHHHcCCeEEEEchHHH--------HHHHHHHHHHHHHHHHcC
Confidence 11123455688999887655544 456777888888787644
|
| >3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A | Back alignment and structure |
|---|
Probab=94.33 E-value=2.8 Score=37.67 Aligned_cols=214 Identities=17% Similarity=0.182 Sum_probs=111.9
Q ss_pred HHHHHHcCcCEEEe-cCCc----------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHH--H-HHHHHHHcCCc
Q psy12516 4 ASALYKMGCYEISL-GDTI----------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQAL--A-NILTAMEFGIS 69 (327)
Q Consensus 4 ~~~~~~~g~~~i~~-~Dt~----------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~--~-~~~~a~~aG~~ 69 (327)
++.+.++|.+.|.+ .|.. |..|..++-..++.+.+..+..|+..-.-.-+|... . ++...+++|+.
T Consensus 31 A~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~aGaa 110 (302)
T 3fa4_A 31 ARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSRSGVA 110 (302)
T ss_dssp HHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCc
Confidence 56677889998888 3533 456667777777777776555666665555555421 1 22223357776
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG 149 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G 149 (327)
-+..-=. .+. -+.|+.. | +-=.+.++..++++...+..++.|
T Consensus 111 gv~iEDq-~~~-----Krcgh~~---------------g-----------------k~l~~~~e~~~rI~Aa~~A~~~~~ 152 (302)
T 3fa4_A 111 AFHIEDQ-VQT-----KRCGHLA---------------G-----------------KILVDTDTYVTRIRAAVQARQRIG 152 (302)
T ss_dssp EEEECSB-CCC---------------------------C-----------------CCBCCHHHHHHHHHHHHHHHHHHT
T ss_pred EEEECCC-CCC-----cccCCCC---------------C-----------------CeecCHHHHHHHHHHHHHHHHhcC
Confidence 6541111 000 0111110 0 000123444666666666555445
Q ss_pred CeEEEEEeeeccCCCCC-CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEee--cCCc
Q psy12516 150 IRVRGYISCVVGCPYEG-AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHC--HDTY 226 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~-r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~--Hn~~ 226 (327)
..+.++-.. |.. ....++.++-++...++|+|.|.+. |.-+++++.++.+.+. ..|+-+-. ....
T Consensus 153 ~d~~I~ART-----Da~~~~gldeAi~Ra~ay~eAGAD~ifi~---g~~~~~ei~~~~~~~~----~~Pl~~n~~~~g~~ 220 (302)
T 3fa4_A 153 SDIVVIART-----DSLQTHGYEESVARLRAARDAGADVGFLE---GITSREMARQVIQDLA----GWPLLLNMVEHGAT 220 (302)
T ss_dssp CCCEEEEEE-----CCHHHHCHHHHHHHHHHHHTTTCSEEEET---TCCCHHHHHHHHHHTT----TSCEEEECCTTSSS
T ss_pred CCEEEEEEe-----cccccCCHHHHHHHHHHHHHcCCCEEeec---CCCCHHHHHHHHHHhc----CCceeEEEecCCCC
Confidence 543322111 110 1245667777778888999999874 4567887776666553 23443321 1111
Q ss_pred CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 227 g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
.. -..-..-+.|+++|-.....+ |+-...+++.+..|++.|
T Consensus 221 p~--~~~~eL~~lGv~~v~~~~~~~--------raa~~A~~~~~~~i~~~g 261 (302)
T 3fa4_A 221 PS--ISAAEAKEMGFRIIIFPFAAL--------GPAVAAMREAMEKLKRDG 261 (302)
T ss_dssp CC--CCHHHHHHHTCSEEEETTTTH--------HHHHHHHHHHHHHHHHHS
T ss_pred CC--CCHHHHHHcCCCEEEEchHHH--------HHHHHHHHHHHHHHHHcC
Confidence 11 123445567988876533322 445666777777776644
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=94.21 E-value=0.68 Score=41.80 Aligned_cols=100 Identities=18% Similarity=0.239 Sum_probs=80.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+.. +.+|+-.++ +++..-++..+..|.++|
T Consensus 31 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G 110 (304)
T 3l21_A 31 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG 110 (304)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999 478899899999888876 447888877 678888899999999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+=..- |+.. .++-++++.+++.
T Consensus 111 adavlv~~------P~y~----~~s~~~l~~~f~~ 135 (304)
T 3l21_A 111 AHGLLVVT------PYYS----KPPQRGLQAHFTA 135 (304)
T ss_dssp CSEEEEEC------CCSS----CCCHHHHHHHHHH
T ss_pred CCEEEECC------CCCC----CCCHHHHHHHHHH
Confidence 98865532 3222 1356777776654
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=94.16 E-value=2.7 Score=36.75 Aligned_cols=207 Identities=13% Similarity=0.077 Sum_probs=110.7
Q ss_pred CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccC-cchh--hhhhhh
Q psy12516 43 DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCG-VKEI--AVFASA 118 (327)
Q Consensus 43 ~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~G-id~i--~l~~~~ 118 (327)
.+++++.....+..+...+..+ ++|.+.||.....+. ...+++...+++.++..- +... ..+.+.
T Consensus 26 mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~-----------~~~~~~~~~l~~~gl~v~~~~~~~~~~l~~~ 94 (287)
T 3kws_A 26 LKLSFQEGIAPGESLNEKLDFMEKLGVVGFEPGGGGLA-----------GRVNEIKQALNGRNIKVSAICAGFKGFILST 94 (287)
T ss_dssp CEEEEETTSSCCSSHHHHHHHHHHTTCCEEECBSTTCG-----------GGHHHHHHHHTTSSCEECEEECCCCSCTTBS
T ss_pred eeEEEEecccCCCCHHHHHHHHHHcCCCEEEecCCchH-----------HHHHHHHHHHHHcCCeEEEEecCCCCcCCCC
Confidence 6799998888887787777776 799999996655221 235555555554443321 1000 000011
Q ss_pred hHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCC--CC-------hHHHHHHHHHHHHcCcCEEE
Q psy12516 119 SEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA--VP-------PHNVTRVATALYKMGCYEIS 189 (327)
Q Consensus 119 sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r--~~-------~e~l~~~~~~~~~~g~~~i~ 189 (327)
.+.. +++.++.+++.++.|++.|.+....... ++ ++..+ .. .+.+.++++.+.+.|+. +.
T Consensus 95 d~~~--------r~~~~~~~~~~i~~a~~lGa~~v~~~~g-~~-~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~ 163 (287)
T 3kws_A 95 DPAI--------RKECMDTMKEIIAAAGELGSTGVIIVPA-FN-GQVPALPHTMETRDFLCEQFNEMGTFAAQHGTS-VI 163 (287)
T ss_dssp SHHH--------HHHHHHHHHHHHHHHHHTTCSEEEECSC-CT-TCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCC-EE
T ss_pred CHHH--------HHHHHHHHHHHHHHHHHcCCCEEEEecC-cC-CcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCE-EE
Confidence 1100 1345778888999999999975322111 11 11101 12 23455555666677875 34
Q ss_pred ecCCC---C--ccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCceeeeccc-cCCCCCCCCCC
Q psy12516 190 LGDTI---G--VGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSSIA-GLGGCPYARGA 260 (327)
Q Consensus 190 l~Dt~---G--~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~~vd~s~~-G~G~~p~~~g~ 260 (327)
+--.. + ..+|.++.+++..+- .|.+.+.+ |.+. .|......+..+..-+.+|+..=. +-. .+|
T Consensus 164 lE~~~~~~~~~~~~~~~~~~ll~~v~--~~~vg~~~D~~h~~~-~g~d~~~~l~~~~~~i~~vHlkD~~~r~----~pG- 235 (287)
T 3kws_A 164 FEPLNRKECFYLRQVADAASLCRDIN--NPGVRCMGDFWHMTW-EETSDMGAFISGGEYLQHVHVASRKRRS----MPG- 235 (287)
T ss_dssp ECCCCTTTCSSCCCHHHHHHHHHHHC--CTTEEEEEEHHHHHH-HCSCHHHHHHHHGGGEEEEEECCTTTSC----STT-
T ss_pred EEecCcccCcccCCHHHHHHHHHHcC--CCCeeEEeehHHHHh-cCCCHHHHHHHhhhhEEEEEeCCCCCCC----CCC-
Confidence 43221 2 356777777766553 13333332 2221 133333444433322344544433 222 234
Q ss_pred CCC--ccHHHHHHHHHhCCCC
Q psy12516 261 SGN--VATEDLVYMLEGMGIE 279 (327)
Q Consensus 261 ~Gn--~~~e~~~~~l~~~g~~ 279 (327)
.|+ .+...++..|++.||+
T Consensus 236 ~G~d~id~~~i~~~L~~~gy~ 256 (287)
T 3kws_A 236 EDGDADNYINGFKGLKMIGYN 256 (287)
T ss_dssp TTGGGCCCHHHHHHHHHTTCC
T ss_pred CCCCCcCHHHHHHHHHHcCCC
Confidence 799 9999999999998776
|
| >3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.54 Score=43.25 Aligned_cols=114 Identities=20% Similarity=0.232 Sum_probs=75.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHH--HcCcCEEEe--cCCCCcc
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALY--KMGCYEISL--GDTIGVG 197 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~--~~g~~~i~l--~Dt~G~~ 197 (327)
+.+|+++..++++++|++.|+.|++-+...-|.++. -.++|++..+++++.- ..|+|.+.+ .-..|.-
T Consensus 136 p~eENi~~Tk~vv~~ah~~gvsVEaElG~iGG~Edgv~~~~~~~~yT~Peea~~Fv~~tg~~~~gvD~LAvaiGt~HG~Y 215 (349)
T 3elf_A 136 PIDENLAIAQELLKAAAAAKIILEIEIGVVGGEEDGVANEINEKLYTSPEDFEKTIEALGAGEHGKYLLAATFGNVHGVY 215 (349)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCEEEEEESCCBC-------------CCCHHHHHHHHHHHTTSTTSCEEEEECSSCBSSCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccCCcccccccccCCCHHHHHHHHHHhCCCCCCceEEEEecCCcccCC
Confidence 468889999999999999999999887765444432 1478888888877653 233775444 3444433
Q ss_pred -------CHHHHHHHHHHHHHhcC------CCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 198 -------TPGTMRLMLEDVLTVIP------ADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 198 -------~P~~~~~~~~~~~~~~~------~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.|+.+.++=+.+.++++ ++||.+|.= -|........|++.|+..|.
T Consensus 216 k~g~p~L~~~~L~~I~~~v~~~~~~~~~~~~vpLVlHGg--SG~p~e~i~~ai~~GV~KiN 274 (349)
T 3elf_A 216 KPGNVKLRPDILAQGQQVAAAKLGLPADAKPFDFVFHGG--SGSLKSEIEEALRYGVVKMN 274 (349)
T ss_dssp CTTSSCCCTHHHHHHHHHHHHHHTCCTTCCCCCEEECCC--TTCCHHHHHHHHHTTEEEEE
T ss_pred CCCCCccCHHHHHHHHHHHHhhcCCccccCCCcEEEeCC--CCCCHHHHHHHHHcCCEEEE
Confidence 34455554444443332 467777654 47888899999999987754
|
| >4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.48 Score=42.38 Aligned_cols=113 Identities=20% Similarity=0.190 Sum_probs=72.8
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCH------HHHHHHHHHHHHhcCCCeEEEe
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTP------GTMRLMLEDVLTVIPADRLAVH 221 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P------~~~~~~~~~~~~~~~~~~l~~H 221 (327)
.++++...+ |.|.. ..+.+.-..-++.+.+.|++.|-+.=-.|.+.- ..+++.++.+++..++..+-+=
T Consensus 82 s~v~V~tVi----gFP~G-~~~~e~K~~Ea~~Av~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVI 156 (297)
T 4eiv_A 82 AGIKVCAAV----NFPEG-TGTPDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVV 156 (297)
T ss_dssp GGSEEEEEE----STTTC-CCCHHHHHHHHHHHHHTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCCeEEEEe----cCCCC-CCCHHHHHHHHHHHHHcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEE
Confidence 356765543 34543 466666666677788889999988777776443 4566677778777654433332
Q ss_pred ec----CCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 222 CH----DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 222 ~H----n~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
.- ++.-.-...+..|+++|+|+|-+|-+ .+ +|++.+|++..+.+
T Consensus 157 lEt~~Lt~~e~i~~A~~ia~~AGADFVKTSTG-f~--------~~gAT~edV~lM~~ 204 (297)
T 4eiv_A 157 LSGGELQGGDIISRAAVAALEGGADFLQTSSG-LG--------ATHATMFTVHLISI 204 (297)
T ss_dssp CCSSCCCCHHHHHHHHHHHHHHTCSEEECCCS-SS--------SCCCCHHHHHHHHH
T ss_pred EecccCCcHHHHHHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHH
Confidence 22 22222235678889999999998754 33 46788888876554
|
| >1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=93.96 E-value=0.14 Score=44.73 Aligned_cols=128 Identities=15% Similarity=0.093 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCC-CCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh-cC
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCP-YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV-IP 214 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~-~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~~ 214 (327)
.+++.++.+|++|+.+. +|.+ ++.-+....+.++.+.+.++|.+.|.+.|-+-.+.+++-.++++.+++. +.
T Consensus 56 ~l~eki~l~~~~gV~v~------~GGTl~E~~~~qg~~~~yl~~~k~lGf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~ 129 (251)
T 1qwg_A 56 VVKEKINYYKDWGIKVY------PGGTLFEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFM 129 (251)
T ss_dssp HHHHHHHHHHTTTCEEE------ECHHHHHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCE
T ss_pred HHHHHHHHHHHcCCeEE------CCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHCCCE
Confidence 37778999999999985 2221 1211222467788888899999999999999999999999999999876 32
Q ss_pred CCeEEEeec-------CCcCcHHHHHHHHHHhcCcee--eec----cccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 215 ADRLAVHCH-------DTYGQALANILTAMEFGISVF--DSS----IAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 215 ~~~l~~H~H-------n~~g~a~an~l~a~~~G~~~v--d~s----~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
+-.++..- -+...-+......+++||++| ++- ..|+-+ ..|+.-...+-..+.+.+
T Consensus 130 -v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEarEsG~~iGi~~------~~g~~r~d~v~~i~~~l~ 198 (251)
T 1qwg_A 130 -VLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFD------KEGKVKENELDVLAKNVD 198 (251)
T ss_dssp -EEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBC------TTSCBCHHHHHHHHTTSC
T ss_pred -EeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEeeecccCCcccCC------CCCCCcHHHHHHHHHhCC
Confidence 11222221 233555777888999999985 432 125655 678988877765555443
|
| >4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A | Back alignment and structure |
|---|
Probab=93.87 E-value=1.2 Score=40.83 Aligned_cols=145 Identities=17% Similarity=0.222 Sum_probs=77.7
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHH----HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLML----EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~----~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~ 73 (327)
++++...++|+|.|.+.|+.| .++|...++.+ +.+.+.+... ..+|+.-+.+ ..+..+ +.|++.+..
T Consensus 194 ~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~-~iih~~g~~~----~~l~~~~~~g~d~i~~ 268 (348)
T 4ay7_A 194 IYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSV-TVLHICGNVN----PILSDMADCGFEGLSV 268 (348)
T ss_dssp HHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSSE-EEEECCSCCH----HHHHHHHTSCCSEEEC
T ss_pred HHHHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccCC-cEEEecCCcH----HHHHHHHHhccccccc
Confidence 466778889999999999976 48999987764 3344444433 3456654332 234444 678887642
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
- . .. .+.+.....+.. ..+.-|+|...++. ..+++++.+.+++++ +.|.++
T Consensus 269 d-----~------~~--~~~~~~k~~~g~~~~l~Gnldp~~~l~-----------~g~~e~i~~~v~~~l----~~~g~I 320 (348)
T 4ay7_A 269 E-----E------KI--GSAKKGKEVIGTRARLVGNVSSPFTLL-----------PGPVDKIKAEAKEAL----EGGIDV 320 (348)
T ss_dssp C-----G------GG--CCHHHHHHHHTTSSEEEEEECCCCCCT-----------TCCHHHHHHHHHHHH----HTTCSE
T ss_pred c-----c------hh--hHHHHHHHHhCCCEEEEcCCCChHhhc-----------CCCHHHHHHHHHHHH----hCCCCE
Confidence 1 1 10 123333333322 23444455433221 123333333444444 344443
Q ss_pred EEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 153 RGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 153 ~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
. + .||-.-..+++|.+..+++.+.++.
T Consensus 321 ~-~----~Ghgi~p~tp~env~a~v~av~ey~ 347 (348)
T 4ay7_A 321 L-A----PGCGIAPMTPLENVKALVAARDEFY 347 (348)
T ss_dssp E-E----ESSSCCTTCCHHHHHHHHHHHHHHT
T ss_pred E-e----CCCccCCCCCHHHHHHHHHHHHHhc
Confidence 2 1 3343333578888888888877764
|
| >2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.69 E-value=1.9 Score=39.59 Aligned_cols=144 Identities=11% Similarity=0.097 Sum_probs=81.0
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHH----HHHHhhcC--CCeeEEEecCccchHHHHHHHHH-HcCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLML----EDVLTVIP--ADRLAVHCHDTYGQALANILTAM-EFGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~----~~~~~~~~--~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~ 73 (327)
++++...++|+|.|.+.|+. |.++|...++.+ +.+.+.++ ++++-+|+-.+ + ..+..+ +.|++.+..
T Consensus 197 ~~~~~~~~aGad~i~i~D~~~~~lsp~~f~ef~~p~~~~i~~~i~~~g~~~i~~~~G~-~----~~l~~l~~~g~d~~~~ 271 (359)
T 2inf_A 197 VYVKAQIKAGAKAIQIFDSWVGALNQADYRTYIKPVMNRIFSELAKENVPLIMFGVGA-S----HLAGDWHDLPLDVVGL 271 (359)
T ss_dssp HHHHHHHHTTCSEEEEECTTGGGSCHHHHHHHTHHHHHHHHHHHGGGCSCEEEECTTC-G----GGHHHHHTSSCSEEEC
T ss_pred HHHHHHHHhCCCEEEEeCCccccCCHHHHHHHhHHHHHHHHHHHHHcCCcEEEEcCCc-H----HHHHHHHHhCCCEEEe
Confidence 46677889999999999976 688887765543 22222222 35665565443 2 244444 789888763
Q ss_pred cccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC-Ce
Q psy12516 74 SIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG-IR 151 (327)
Q Consensus 74 ~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G-i~ 151 (327)
- . ..+++++... .. ..+.-++|... +.-+.+++.++++++++. ...| -.
T Consensus 272 d-----~---------~~d~~~~~~~-g~~~~l~Gnldp~~-------------l~~t~e~I~~~v~~~l~~-~~~~~g~ 322 (359)
T 2inf_A 272 D-----W---------RLGIDEARSK-GITKTVQGNLDPSI-------------LLAPWEVIEQKTKEILDQ-GMESDGF 322 (359)
T ss_dssp C-----T---------TSCHHHHHHT-TCCSEEECCBCGGG-------------GGSCHHHHHHHHHHHHHH-HTTSSCE
T ss_pred C-----C---------CCCHHHHHHc-CCCEEEEecCChHH-------------hcCCHHHHHHHHHHHHHh-CCCCCCe
Confidence 1 1 1244544332 11 12223344321 123566667778888877 2212 22
Q ss_pred EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 152 VRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 152 v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
+- ..||-....++++.+..+.+.+.+++
T Consensus 323 Il-----~~gcgi~~~~~~enl~a~ve~v~~~~ 350 (359)
T 2inf_A 323 IF-----NLGHGVFPDVSPEVLKKLTAFVHEYS 350 (359)
T ss_dssp EB-----CBSSCCCTTSCHHHHHHHHHHHHHHH
T ss_pred EE-----eCCCCCCCCcCHHHHHHHHHHHHHhh
Confidence 21 23443334678888888888777653
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=93.57 E-value=1.3 Score=38.25 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=57.3
Q ss_pred HHHHHHHHHHcCcCEEEecCC--CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCceeeeccc
Q psy12516 173 VTRVATALYKMGCYEISLGDT--IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt--~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd~s~~ 249 (327)
..+.++.+.+.|++.|.+-++ .|...... .++++.+++.. ++|+.. .-|.. ..+...+.++|++.+=..-.
T Consensus 153 ~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~-~~~~~~l~~~~-~ipvia----~GGI~~~~d~~~~~~~Gadgv~vGsa 226 (253)
T 1thf_D 153 LRDWVVEVEKRGAGEILLTSIDRDGTKSGYD-TEMIRFVRPLT-TLPIIA----SGGAGKMEHFLEAFLAGADAALAASV 226 (253)
T ss_dssp HHHHHHHHHHTTCSEEEEEETTTTTSCSCCC-HHHHHHHGGGC-CSCEEE----ESCCCSHHHHHHHHHTTCSEEEESHH
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCCCCCCCC-HHHHHHHHHhc-CCCEEE----ECCCCCHHHHHHHHHcCChHHHHHHH
Confidence 456677788899998877543 23322211 34566666654 345554 23565 37778888899886533211
Q ss_pred cCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 250 GLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 250 G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
=+ .+..+.++.+..|++.|+++.
T Consensus 227 l~---------~~~~~~~~~~~~l~~~g~~~~ 249 (253)
T 1thf_D 227 FH---------FREIDVRELKEYLKKHGVNVR 249 (253)
T ss_dssp HH---------TTCSCHHHHHHHHHHTTCCCC
T ss_pred HH---------cCCCCHHHHHHHHHHcCCccc
Confidence 01 122378999999998887654
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.56 E-value=0.86 Score=39.65 Aligned_cols=115 Identities=17% Similarity=0.220 Sum_probs=71.2
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHHHHHHHhcCCCeEEEee
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIPADRLAVHC 222 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~~~~~~~~~~~~l~~H~ 222 (327)
+..++++...+. .|. +..+.+.-..-++.+.+.|+|.|-+.=-.|. ..-..+.+-+..+++..++..+-+=.
T Consensus 75 ~~s~v~v~tVig----FP~-G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIl 149 (239)
T 3ngj_A 75 KGTGVKVCTVIG----FPL-GATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVII 149 (239)
T ss_dssp TTSSCEEEEEES----TTT-CCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEEC
T ss_pred CCCCCeEEEEec----cCC-CCCchHHHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEE
Confidence 456777765544 343 2455565566677788889999888766775 34566788888888876543332222
Q ss_pred cCCc---CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 223 HDTY---GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 223 Hn~~---g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
-.-+ -.=...+..|.++|+|+|.+|-+ .+ .|++.+|++-.+.+
T Consensus 150 Et~~Lt~eei~~a~~ia~~aGADfVKTSTG-f~--------~ggAt~~dv~lmr~ 195 (239)
T 3ngj_A 150 ECCYLTNEEKVEVCKRCVAAGAEYVKTSTG-FG--------THGATPEDVKLMKD 195 (239)
T ss_dssp CGGGSCHHHHHHHHHHHHHHTCSEEECCCS-SS--------SCCCCHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHHHHHHCcCEEECCCC-CC--------CCCCCHHHHHHHHH
Confidence 1111 11233445568999999998743 22 35688888765554
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=93.44 E-value=1.3 Score=42.21 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHcCCe-EEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 135 LERFSEVVSTALTNGIR-VRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
.+.+.+.++.+++.|+. +...++ +|-|. -+.+.+.+.++.+.+++++.|.+
T Consensus 188 ~~~~~~ai~~~r~~G~~~v~~dlI--~GlPg---et~e~~~~tl~~~~~l~~~~i~~ 239 (457)
T 1olt_A 188 EEFIFALLNHAREIGFTSTNIDLI--YGLPK---QTPESFAFTLKRVAELNPDRLSV 239 (457)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEE--ESCTT---CCHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCcEEEEEE--cCCCC---CCHHHHHHHHHHHHhcCcCEEEe
Confidence 45577788899999997 776655 45454 36889999999999999997765
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=93.39 E-value=0.94 Score=40.59 Aligned_cols=98 Identities=15% Similarity=0.182 Sum_probs=78.0
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhcC
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFGI 241 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G~ 241 (327)
..|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+.. +.+|+-.++ +++..-++..+..|.++|+
T Consensus 19 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga 98 (292)
T 3daq_A 19 KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGA 98 (292)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCC
Confidence 78999999999999999999999999999 478888888998888876 447888887 6788888999999999999
Q ss_pred ceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 242 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 242 ~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
+.+=..- |+.. .++-++++.+++
T Consensus 99 davlv~~------P~y~----~~~~~~l~~~f~ 121 (292)
T 3daq_A 99 DAIMLIT------PYYN----KTNQRGLVKHFE 121 (292)
T ss_dssp SEEEEEC------CCSS----CCCHHHHHHHHH
T ss_pred CEEEECC------CCCC----CCCHHHHHHHHH
Confidence 9875532 3221 134566766655
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=93.24 E-value=2 Score=38.54 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=114.9
Q ss_pred HHHHHHcCcCEEEecCC-c----------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccc----hHHHHHHHHHHcCC
Q psy12516 4 ASALYKMGCYEISLGDT-I----------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG----QALANILTAMEFGI 68 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt-~----------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g----~~~~~~~~a~~aG~ 68 (327)
++.+.++|.|.|.+.|. . |..+..++...++.+.+..+ .|+..-.=.-+| ....++...+++|+
T Consensus 30 A~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~-~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa 108 (295)
T 1xg4_A 30 ALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCS-LPLLVDADIGFGSSAFNVARTVKSMIKAGA 108 (295)
T ss_dssp HHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCC-SCEEEECTTCSSSSHHHHHHHHHHHHHHTC
T ss_pred HHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCC-CCEEecCCcccCCCHHHHHHHHHHHHHcCC
Confidence 56677899999999987 2 55677778888888888775 566666555555 23445555668898
Q ss_pred cEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHc
Q psy12516 69 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTN 148 (327)
Q Consensus 69 ~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~ 148 (327)
.-|..--. .+. -+.|+.. |-. +.+ .++..++++.+++.....
T Consensus 109 ~gv~iEd~-~~~-----k~cgH~~---------------gk~----L~p-------------~~~~~~~I~Aa~~a~~~~ 150 (295)
T 1xg4_A 109 AGLHIEDQ-VGA-----KRSGHRP---------------NKA----IVS-------------KEEMVDRIRAAVDAKTDP 150 (295)
T ss_dssp SEEEEECB-CSS-----CCCTTSS---------------SCC----BCC-------------HHHHHHHHHHHHHHCSST
T ss_pred eEEEECCC-CCC-----cccCCCC---------------CCc----cCC-------------HHHHHHHHHHHHHhccCC
Confidence 87663211 110 0111111 000 001 112233444333333333
Q ss_pred CCeEEEEEeeeccCCCCC-CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 149 GIRVRGYISCVVGCPYEG-AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~-r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
++.+.+- .+.. ....+..++-++.+.++|+|.|.+- |.-+++.+.++.+.+ + +|+-+-.-. +|
T Consensus 151 ~~~i~aR-------tda~~~~gl~~ai~ra~ay~eAGAd~i~~e---~~~~~~~~~~i~~~~----~-iP~~~N~~~-~g 214 (295)
T 1xg4_A 151 DFVIMAR-------TDALAVEGLDAAIERAQAYVEAGAEMLFPE---AITELAMYRQFADAV----Q-VPILANITE-FG 214 (295)
T ss_dssp TSEEEEE-------ECCHHHHCHHHHHHHHHHHHHTTCSEEEET---TCCSHHHHHHHHHHH----C-SCBEEECCS-SS
T ss_pred CcEEEEe-------cHHhhhcCHHHHHHHHHHHHHcCCCEEEEe---CCCCHHHHHHHHHHc----C-CCEEEEecc-cC
Confidence 4444321 0110 1123677788888889999998875 233456655555544 2 344221110 11
Q ss_pred cH-HHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 228 QA-LANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 228 ~a-~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
.. .-+.-..-+.|+++|-.....+ |+-+..+++++..|++.|
T Consensus 215 ~~p~~~~~eL~~~G~~~v~~~~~~~--------~aa~~a~~~~~~~i~~~g 257 (295)
T 1xg4_A 215 ATPLFTTDELRSAHVAMALYPLSAF--------RAMNRAAEHVYNVLRQEG 257 (295)
T ss_dssp SSCCCCHHHHHHTTCSEEEESSHHH--------HHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCHHHHHHcCCCEEEEChHHH--------HHHHHHHHHHHHHHHHhC
Confidence 11 1223455678999887655544 456777778887777644
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.20 E-value=1.3 Score=39.76 Aligned_cols=99 Identities=15% Similarity=0.118 Sum_probs=78.1
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+.. +.+|+-.|+ +|+..-++..+..|.++|
T Consensus 23 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G 102 (297)
T 3flu_A 23 GSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAG 102 (297)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999 578999899999888876 446787776 478888899999999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
++.+=..- |+.. .++-++++.+++
T Consensus 103 adavlv~~------P~y~----~~~~~~l~~~f~ 126 (297)
T 3flu_A 103 ADYTLSVV------PYYN----KPSQEGIYQHFK 126 (297)
T ss_dssp CSEEEEEC------CCSS----CCCHHHHHHHHH
T ss_pred CCEEEECC------CCCC----CCCHHHHHHHHH
Confidence 98765432 3222 134466666555
|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
Probab=93.15 E-value=2.5 Score=36.96 Aligned_cols=22 Identities=14% Similarity=0.249 Sum_probs=18.8
Q ss_pred CCCccHHHHHHHHHhCCCCCCC
Q psy12516 261 SGNVATEDLVYMLEGMGIETGA 282 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~~g~~~~~ 282 (327)
.|..+...++..|++.||+..+
T Consensus 221 ~G~id~~~~~~~L~~~gy~g~~ 242 (294)
T 3vni_A 221 RGRIPWVEIGEALADIGYNGSV 242 (294)
T ss_dssp SSSCCHHHHHHHHHHTTCCSCE
T ss_pred CCCcCHHHHHHHHHHhCCCCcE
Confidence 7999999999999998877443
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=93.13 E-value=1.2 Score=39.73 Aligned_cols=99 Identities=14% Similarity=0.143 Sum_probs=77.9
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+.. +.+++-.|+ +|+..-++..+..|.++|
T Consensus 17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G 96 (291)
T 3tak_A 17 GGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLG 96 (291)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 578899899999888876 346788776 468888888999999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
++.+=..- |+.. .++-++++.+++
T Consensus 97 adavlv~~------P~y~----~~~~~~l~~~f~ 120 (291)
T 3tak_A 97 ADAALLVT------PYYN----KPTQEGLYQHYK 120 (291)
T ss_dssp CSEEEEEC------CCSS----CCCHHHHHHHHH
T ss_pred CCEEEEcC------CCCC----CCCHHHHHHHHH
Confidence 99875432 3222 134566666555
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=93.05 E-value=4.3 Score=35.63 Aligned_cols=187 Identities=15% Similarity=0.128 Sum_probs=102.2
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l 100 (327)
+..++.++.++++..++.- |..-+.+-..+..+...++ .++..- +.+ |+ | .|..+++.-+. -
T Consensus 54 p~~t~~~I~~lc~eA~~~~------~aaVCV~p~~V~~a~~~L~gs~v~v~-tVi-gF---P-----~G~~~~~~Kv~-E 116 (260)
T 3r12_A 54 PFATPDDIKKLCLEARENR------FHGVCVNPCYVKLAREELEGTDVKVV-TVV-GF---P-----LGANETRTKAH-E 116 (260)
T ss_dssp TTCCHHHHHHHHHHHHHTT------CSEEEECGGGHHHHHHHHTTSCCEEE-EEE-ST---T-----TCCSCHHHHHH-H
T ss_pred CCCCHHHHHHHHHHHHhcC------CcEEEECHHHHHHHHHHhcCCCCeEE-EEe-cC---C-----CCCCcHHHHHH-H
Confidence 4678888888888776632 2222233333444555552 233222 112 11 2 24444543221 2
Q ss_pred hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHH
Q psy12516 101 EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATAL 180 (327)
Q Consensus 101 ~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~ 180 (327)
-+.+++.|.|.+.+........ ....++..+.+..+.+.+. |..+.+.+.. +..+++.+...++.+
T Consensus 117 a~~Ai~~GAdEIDmViNig~lk-----~g~~~~v~~eI~~v~~a~~--~~~lKVIlEt-------~~Lt~eei~~A~~ia 182 (260)
T 3r12_A 117 AIFAVESGADEIDMVINVGMLK-----AKEWEYVYEDIRSVVESVK--GKVVKVIIET-------CYLDTEEKIAACVIS 182 (260)
T ss_dssp HHHHHHHTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTT--TSEEEEECCG-------GGCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeehhhhc-----cccHHHHHHHHHHHHHhcC--CCcEEEEEeC-------CCCCHHHHHHHHHHH
Confidence 2456778888776654443221 1123344555666665543 5555433332 246889999999999
Q ss_pred HHcCcCEEEecCCCC----ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 181 YKMGCYEISLGDTIG----VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 181 ~~~g~~~i~l~Dt~G----~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.++|+|-|--+ +| -.+++++.-+-..+ +. ++++-.---.. ....+++-+++|++++=+|
T Consensus 183 ~eaGADfVKTS--TGf~~~GAT~edV~lm~~~v----g~-~v~VKaAGGIr-t~~~al~mi~aGA~RiGtS 245 (260)
T 3r12_A 183 KLAGAHFVKTS--TGFGTGGATAEDVHLMKWIV----GD-EMGVKASGGIR-TFEDAVKMIMYGADRIGTS 245 (260)
T ss_dssp HHTTCSEEECC--CSSSSCCCCHHHHHHHHHHH----CT-TSEEEEESSCC-SHHHHHHHHHTTCSEEEES
T ss_pred HHhCcCEEEcC--CCCCCCCCCHHHHHHHHHHh----CC-CceEEEeCCCC-CHHHHHHHHHcCCceeecc
Confidence 99999987654 44 56777766654433 22 34433321111 1267778899999987554
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=92.97 E-value=4.5 Score=35.57 Aligned_cols=204 Identities=10% Similarity=0.072 Sum_probs=113.9
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHc-CC--cEEEecccCCCCCCCCCCccCCCcHHHHHH
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF-GI--SVFDSSIAGLGGCPYARGASGNVATEDLVY 98 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~a-G~--~~id~~~~glg~~p~~~~~~gn~~~e~v~~ 98 (327)
...++.+++.+++..++..| +|..-+.+-..+..+...++. |. -.+-+.++ + ..|..+++.-+.
T Consensus 23 p~~t~~~i~~lc~eA~~~~~----~~~aVcV~p~~v~~a~~~L~~~g~~~v~v~tVig-F--------P~G~~~~~~Kv~ 89 (260)
T 1p1x_A 23 DDDTDEKVIALCHQAKTPVG----NTAAICIYPRFIPIARKTLKEQGTPEIRIATVTN-F--------PHGNDDIDIALA 89 (260)
T ss_dssp TTCCHHHHHHHHHHTEETTE----ECSEEECCGGGHHHHHHHHHHTTCTTSEEEEEES-T--------TTCCSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhccC----CceEEEECHHHHHHHHHHhhhcCCCCceEEEEeC-C--------CCCCCcHHHHHH
Confidence 44577888887776665432 444445444445566666652 43 23433333 2 123455553322
Q ss_pred HhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHH
Q psy12516 99 MLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVAT 178 (327)
Q Consensus 99 ~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~ 178 (327)
- -+.+++.|.|.+.+........ ....++..+.+..+.+.+++.|..+.+.+.... ..+.+.+...++
T Consensus 90 E-~~~Av~~GAdEIDmVinig~l~-----~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~------L~d~e~i~~a~~ 157 (260)
T 1p1x_A 90 E-TRAAIAYGADEVDVVFPYRALM-----AGNEQVGFDLVKACKEACAAANVLLKVIIETGE------LKDEALIRKASE 157 (260)
T ss_dssp H-HHHHHHHTCSEEEEECCHHHHH-----TTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHH------HCSHHHHHHHHH
T ss_pred H-HHHHHHcCCCEEEEeccHHhhh-----CCCHHHHHHHHHHHHHHhcccCCeEEEEEeccc------CCcHHHHHHHHH
Confidence 2 2456778888776654443221 123345577788888888777777666655432 234444789999
Q ss_pred HHHHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhc-CCCeEEEeecCCcCcHHHHHHHHHHh-----cCceeeecccc
Q psy12516 179 ALYKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEF-----GISVFDSSIAG 250 (327)
Q Consensus 179 ~~~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~-~~~~l~~H~Hn~~g~a~an~l~a~~~-----G~~~vd~s~~G 250 (327)
...++|+|-|--.- +.|-.+|++++-+.+.+++.. +. ++.+-.---... ...++.-+++ |.+|++....=
T Consensus 158 ia~eaGADfVKTSTGf~~~gAt~e~v~lm~~~I~~~~~g~-~v~VKaaGGIrt-~~~al~~i~aga~~lG~~w~~~~~~R 235 (260)
T 1p1x_A 158 ISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEK-TVGFKPAGGVRT-AEDAQKYLAIADELFGADWADARHYR 235 (260)
T ss_dssp HHHHTTCSEEECCCSCSSCCCCHHHHHHHHHHHHHHTCTT-TCEEECBSSCCS-HHHHHHHHHHHHHHHCTTSCSTTTBC
T ss_pred HHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHhcCCC-CceEEEeCCCCC-HHHHHHHHHhhhhhccccccccCceE
Confidence 99999999875431 124459998887776666542 22 344433321111 3344444444 56677766663
Q ss_pred CC
Q psy12516 251 LG 252 (327)
Q Consensus 251 ~G 252 (327)
+|
T Consensus 236 iG 237 (260)
T 1p1x_A 236 FG 237 (260)
T ss_dssp EE
T ss_pred ee
Confidence 33
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=1.1 Score=40.40 Aligned_cols=100 Identities=17% Similarity=0.126 Sum_probs=78.7
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC--CCeEEEee-cCCcCcHHHHHHHHHH
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP--ADRLAVHC-HDTYGQALANILTAME 238 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~--~~~l~~H~-Hn~~g~a~an~l~a~~ 238 (327)
++..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+-.++ +|+..-++..+..|.+
T Consensus 22 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~ 101 (301)
T 3m5v_A 22 NGKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKE 101 (301)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHH
Confidence 3478999999999999999999999999999 5889998999999888764 37888876 4678888889999999
Q ss_pred hcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 239 FGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 239 ~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
+|++.+=..- |+.. .++-++++..++
T Consensus 102 ~Gadavlv~~------P~y~----~~s~~~l~~~f~ 127 (301)
T 3m5v_A 102 HGADGILSVA------PYYN----KPTQQGLYEHYK 127 (301)
T ss_dssp TTCSEEEEEC------CCSS----CCCHHHHHHHHH
T ss_pred cCCCEEEEcC------CCCC----CCCHHHHHHHHH
Confidence 9998765532 3222 134566666555
|
| >3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A* | Back alignment and structure |
|---|
Probab=92.96 E-value=0.86 Score=41.56 Aligned_cols=195 Identities=13% Similarity=0.108 Sum_probs=109.4
Q ss_pred HHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCC------------ccCCCcHHHHHHHhh
Q psy12516 35 DVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARG------------ASGNVATEDLVYMLE 101 (327)
Q Consensus 35 ~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~------------~~gn~~~e~v~~~l~ 101 (327)
.+.+.+| +++.|.|=+-.+....+.+-. +.|++.-..++..+.. .+... ..--...|++.....
T Consensus 5 ~~~~~lP--K~ELH~Hl~Gsl~~~t~~~la~~~~~~lp~~~~~~l~~-~~~~~~l~~fl~~~~~~~~vl~t~ed~~~~a~ 81 (326)
T 3pao_A 5 EWLNALP--KAELHLHLEGTLEPELLFALAERNRIALPWNDVETLRK-AYAFNNLQEFLDLYYAGADVLRTEQDFYDLTW 81 (326)
T ss_dssp HHHHHSC--EEECSBBGGGGCCHHHHHHHHHHTTCCCSSSSHHHHHH-TCCCSSHHHHHHHHHHHGGGCCSHHHHHHHHH
T ss_pred HHHHhCC--ceEEEecccCCCCHHHHHHHHHhcCCCCCCCCHHHHHh-hcCCCCHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3445677 788999999888777776654 5776532111111110 00000 000112333333222
Q ss_pred h---hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-HcCCeEEEEEeeeccCCCCCCCChHHHHHHH
Q psy12516 102 G---KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTAL-TNGIRVRGYISCVVGCPYEGAVPPHNVTRVA 177 (327)
Q Consensus 102 ~---~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~-~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~ 177 (327)
. ...+.|+..+.+... .+....-+.+.+++++.+.+.++.++ +.|+.+...++.. -..+++...+.+
T Consensus 82 ~~~~~~~~dgV~y~Eir~~---P~~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~------R~~~~~~a~~~~ 152 (326)
T 3pao_A 82 AYLQKCKAQNVVHVEPFFD---PQTHTDRGIPFEVVLAGIRAALRDGEKLLGIRHGLILSFL------RHLSEEQAQKTL 152 (326)
T ss_dssp HHHHHHHHTTEEEECCEEC---HHHHHTTTCCHHHHHHHHHHHHHHHHHHHCCEECCEEEEE------TTSCHHHHHHHH
T ss_pred HHHHHHHHcCCeEEEEEEC---hHHhccCCCCHHHHHHHHHHHHHHHHhhCceEEEEEEEeC------CCCCHHHHHHHH
Confidence 2 233456655544321 12222346788888888888887664 5688776554442 135667777776
Q ss_pred HHHHHc--CcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCceee
Q psy12516 178 TALYKM--GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFD 245 (327)
Q Consensus 178 ~~~~~~--g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~vd 245 (327)
+.+.++ ++..+-|+-.-....|....+.+...++. +.++.+|+....+ ..+...|+. .|+++|+
T Consensus 153 ~~a~~~~~~vvG~dL~g~E~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~--~~~i~~al~~lg~~rig 219 (326)
T 3pao_A 153 DQALPFRDAFIAVGLDSSEVGHPPSKFQRVFDRARSE--GFLTVAHAGEEGP--PEYIWEALDLLKVERID 219 (326)
T ss_dssp HHHGGGGGGCSEEEEESCCTTCCGGGGHHHHHHHHHT--TCEECEEESSSSC--HHHHHHHHHTTCCSSEE
T ss_pred HHHhhccccceeeCCCCCCCCCCHHHHHHHHHHHHHc--CCceeeecCCCCC--HHHHHHHHhcCCCceee
Confidence 666654 34455553222234677777777776653 5688888887654 356677885 8998764
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=92.88 E-value=3 Score=37.42 Aligned_cols=210 Identities=14% Similarity=0.092 Sum_probs=109.3
Q ss_pred HHHHHHcCcCEEEecC-----Cc------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccch---HHHHHHHHHHcCCc
Q psy12516 4 ASALYKMGCYEISLGD-----TI------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ---ALANILTAMEFGIS 69 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~D-----t~------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~---~~~~~~~a~~aG~~ 69 (327)
++.+.++|.|.|.+.| ++ |..+..++...++.+.+..+ .|+..-.=.-+|. ...++...+++|+.
T Consensus 35 A~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~-~PviaD~d~Gyg~~~~v~~~v~~l~~aGaa 113 (298)
T 3eoo_A 35 AKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATN-LPLLVDIDTGWGGAFNIARTIRSFIKAGVG 113 (298)
T ss_dssp HHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCC-SCEEEECTTCSSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcC-CeEEEECCCCCCCHHHHHHHHHHHHHhCCe
Confidence 4567788999999998 22 55677788888888877664 5565555555552 23333444478887
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcC
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNG 149 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~G 149 (327)
-+..-=. .+. -+.|+.. |- -+. +.++..++++..++.....+
T Consensus 114 gv~iEDq-~~~-----k~cGh~~---------------gk----~l~-------------~~~e~~~ri~Aa~~A~~~~~ 155 (298)
T 3eoo_A 114 AVHLEDQ-VGQ-----KRCGHRP---------------GK----ECV-------------PAGEMVDRIKAAVDARTDET 155 (298)
T ss_dssp EEEEECB-CCC-----CCTTCCC---------------CC----CBC-------------CHHHHHHHHHHHHHHCSSTT
T ss_pred EEEECCC-CCC-----cccCCCC---------------CC----eec-------------CHHHHHHHHHHHHHhccCCC
Confidence 6542111 110 0112111 00 000 11222344443333222222
Q ss_pred CeEEEEEeeeccCCCCC-CCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEee--cCCc
Q psy12516 150 IRVRGYISCVVGCPYEG-AVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHC--HDTY 226 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~-r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~--Hn~~ 226 (327)
+-+.+ . .|.. ....++.++-++...++|+|.|.+. |.-+++++.++.+.+. .|+-+-. .+..
T Consensus 156 ~~I~A--R-----TDa~~~~gldeai~Ra~ay~~AGAD~if~~---~~~~~ee~~~~~~~~~-----~Pl~~n~~~~g~t 220 (298)
T 3eoo_A 156 FVIMA--R-----TDAAAAEGIDAAIERAIAYVEAGADMIFPE---AMKTLDDYRRFKEAVK-----VPILANLTEFGST 220 (298)
T ss_dssp SEEEE--E-----ECTHHHHHHHHHHHHHHHHHHTTCSEEEEC---CCCSHHHHHHHHHHHC-----SCBEEECCTTSSS
T ss_pred eEEEE--e-----ehhhhhcCHHHHHHHHHhhHhcCCCEEEeC---CCCCHHHHHHHHHHcC-----CCeEEEeccCCCC
Confidence 32221 1 1110 1123455566667778899998774 3346777777666653 3442211 1111
Q ss_pred CcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 227 GQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 227 g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
. .-+.-+.-+.|+++|-.....+ |+-+..+++++..|++.|
T Consensus 221 p--~~~~~eL~~lGv~~v~~~~~~~--------raa~~a~~~~~~~i~~~g 261 (298)
T 3eoo_A 221 P--LFTLDELKGANVDIALYCCGAY--------RAMNKAALNFYETVRRDG 261 (298)
T ss_dssp C--CCCHHHHHHTTCCEEEECSHHH--------HHHHHHHHHHHHHHHHHS
T ss_pred C--CCCHHHHHHcCCeEEEEchHHH--------HHHHHHHHHHHHHHHHcC
Confidence 1 1134455677998887655544 556777888888777644
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.80 E-value=0.61 Score=42.27 Aligned_cols=98 Identities=10% Similarity=0.142 Sum_probs=79.1
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCCCeEEEee-cCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPADRLAVHC-HDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~~~l~~H~-Hn~~g~a~an~l~a~~~G~ 241 (327)
+..|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+..+.+||..++ +|+..-++..+..|.++|+
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga 103 (313)
T 3dz1_A 24 GKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGA 103 (313)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999 488999999999888877557888877 5788888999999999999
Q ss_pred ceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 242 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 242 ~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
+.+=. +. |+. .++-++++..++
T Consensus 104 davlv-~~-----P~~-----~~s~~~l~~~f~ 125 (313)
T 3dz1_A 104 AGVMI-AP-----PPS-----LRTDEQITTYFR 125 (313)
T ss_dssp SEEEE-CC-----CTT-----CCSHHHHHHHHH
T ss_pred CEEEE-CC-----CCC-----CCCHHHHHHHHH
Confidence 88754 22 331 135566666555
|
| >3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=92.78 E-value=0.87 Score=42.02 Aligned_cols=114 Identities=19% Similarity=0.259 Sum_probs=77.1
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----------CCCChHHHHHHHHHHHHc-CcCEEEe--cCCCCc
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----------GAVPPHNVTRVATALYKM-GCYEISL--GDTIGV 196 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----------~r~~~e~l~~~~~~~~~~-g~~~i~l--~Dt~G~ 196 (327)
+.+|+++..++++++|++.|+.|++-+...-|.++. -.++|++..+++++.-.. |+|.+.+ .-..|.
T Consensus 147 p~eENI~~Tk~vv~~ah~~gvsVEaELG~igG~Edgv~~~~~~~~~~yT~Peea~~Fv~~tg~~~gvD~LAvaiGt~HG~ 226 (357)
T 3qm3_A 147 SLEENLSTCEVYLQKLDALGVALEIELGCTGGEEDGVDNTGIDNSKLYTQPEDVALAYERLGKISDKFSIAASFGNVHGV 226 (357)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCEEEEECCCCCC-----CCSSTTCTTTSCCHHHHHHHHHHHTTTCSCEEEECCSSCCCSS
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccccccccccCCHHHHHHHHHHhCCCCcccEEEEecCCccCC
Confidence 468899999999999999999999877764444331 147899988888765322 3554333 344443
Q ss_pred c-------CHHHHHHHHHHHHHhc--C---CCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 197 G-------TPGTMRLMLEDVLTVI--P---ADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 197 ~-------~P~~~~~~~~~~~~~~--~---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
- .|+.+.++-..+++.+ + .+||.+|.=. |..-.....|++.|+..|.
T Consensus 227 Yk~g~p~L~~~~L~~i~~~i~~~~~~~~~~~vpLVlHGgS--G~p~e~i~~ai~~GV~KiN 285 (357)
T 3qm3_A 227 YKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGS--GSELKDIKNAVSYGVIKMN 285 (357)
T ss_dssp CCSSCCCCCTHHHHHHHHHHHHHTTCSCSCCSCEEECSCT--TCCHHHHHHHHHTTEEEEE
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHhccccCCCCcEEEeCCC--CCCHHHHHHHHHCCceEEE
Confidence 3 3556666555566654 2 3677777654 7788899999999987754
|
| >1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A | Back alignment and structure |
|---|
Probab=92.72 E-value=1.3 Score=40.95 Aligned_cols=115 Identities=22% Similarity=0.298 Sum_probs=75.3
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC---------C-CCChHHHHHHHHHHHHcC-cCE--EEecCCCC
Q psy12516 129 CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE---------G-AVPPHNVTRVATALYKMG-CYE--ISLGDTIG 195 (327)
Q Consensus 129 ~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~---------~-r~~~e~l~~~~~~~~~~g-~~~--i~l~Dt~G 195 (327)
.+.+|+++..++++++|++.|+.|++-|...-|.++. . .++|++..+++++.-... .|. +.+.-..|
T Consensus 148 ~p~eENI~~Tkevv~~ah~~gvsVEaELG~vGG~EDgv~~~~~~~~~~yT~Peea~~fv~~ttgvd~~d~LAvaiGt~HG 227 (358)
T 1dos_A 148 ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHG 227 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCS
T ss_pred CCHHHHHHHHHHHHHHHHHcCCEEEEEeccccCcCCCccccccccccccCCHHHHHHHHHHhcCCChhceEEEecccccC
Confidence 3568899999999999999999999888775443432 1 378999988888754332 113 33334444
Q ss_pred cc-------CHHHHHHHHHHHHHhc--CC--CeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 196 VG-------TPGTMRLMLEDVLTVI--PA--DRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 196 ~~-------~P~~~~~~~~~~~~~~--~~--~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.- .|+.+.++=+.+++.+ |. +||.+|.= -|........|+..|+..|.
T Consensus 228 ~Yk~g~p~L~~~~L~~i~~~i~~~~g~~~~~vpLVlHGg--SG~~~e~i~~ai~~GV~KiN 286 (358)
T 1dos_A 228 VYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGG--SGSTAQEIKDSVSYGVVKMN 286 (358)
T ss_dssp SCCCSCCCCCTHHHHHHHHHHHHHHTCCTTCSCEEECSC--TTCCHHHHHHHHHTTEEEEE
T ss_pred ccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCcEEEeCC--CCCCHHHHHHHHHCCCeEEE
Confidence 33 2344444434444442 32 56777664 47778888999999987654
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=92.71 E-value=4.8 Score=35.26 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=74.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHH---HhcC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVL---TVIP 214 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~---~~~~ 214 (327)
..++++.+++.|.++-+ ++.. +..--+.+++.+...++.+.|+|.+-++=+. -++.++.+++.... +..+
T Consensus 128 ~~~l~~~a~~~~~kiI~--S~Hd---f~~TP~~~el~~~~~~~~~~gaDIvKia~~~--~~~~D~l~Ll~~~~~~~~~~~ 200 (258)
T 4h3d_A 128 IDEVVNFAHKKEVKVII--SNHD---FNKTPKKEEIVSRLCRMQELGADLPKIAVMP--QNEKDVLVLLEATNEMFKIYA 200 (258)
T ss_dssp HHHHHHHHHHTTCEEEE--EEEE---SSCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCCEEEE--EEec---CCCCCCHHHHHHHHHHHHHhCCCEEEEEEcc--CCHHHHHHHHHHHHHHHHhcC
Confidence 55677888888888753 3321 1222344788899999999999998887664 35677777766543 3445
Q ss_pred CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 215 ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 215 ~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
+.|+..-+=-..| .-.=+.+-..|....-+++ |+ +- +.|+.+++++...|+-
T Consensus 201 ~~P~I~~~MG~~G--~~SRi~~~~fGS~lTf~~~---~~-~s---APGQl~~~el~~~l~l 252 (258)
T 4h3d_A 201 DRPIITMSMSGMG--VISRLCGEIFGSALTFGAA---KS-VS---APGQISFKELNSVLNL 252 (258)
T ss_dssp SSCBEEEECTGGG--GGGGTCHHHHCBCEEECBC---C-------CTTCCBHHHHHHHHHH
T ss_pred CCCEEEEeCCCCC--hHHHHHHHHhCCceEeccC---CC-CC---CCCCCCHHHHHHHHHH
Confidence 5565442222222 2222344456666555554 33 32 4679999999887764
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=92.63 E-value=4.4 Score=34.83 Aligned_cols=215 Identities=11% Similarity=0.059 Sum_probs=105.3
Q ss_pred CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhccc-CcchhhhhhhhhH
Q psy12516 43 DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQC-GVKEIAVFASASE 120 (327)
Q Consensus 43 ~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~-Gid~i~l~~~~sd 120 (327)
.+++++.....+..+...++.+ ++|.+.||.........+. .....+++...+++.+++. .+.. ....
T Consensus 7 m~lg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~-----~~~~~~~~~~~~~~~gl~~~~~~~---~~~~-- 76 (272)
T 2q02_A 7 TRFCINRKIAPGLSIEAFFRLVKRLEFNKVELRNDMPSGSVT-----DDLNYNQVRNLAEKYGLEIVTINA---VYPF-- 76 (272)
T ss_dssp GGEEEEGGGCTTSCHHHHHHHHHHTTCCEEEEETTSTTSSTT-----TTCCHHHHHHHHHHTTCEEEEEEE---ETTT--
T ss_pred hhhhhcccccCCCCHHHHHHHHHHcCCCEEEeeccccccccc-----cccCHHHHHHHHHHcCCeEEechh---hhcc--
Confidence 4678877776666666666666 7899999976422221111 1234555655555544432 1111 0011
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC-hHHHHHHHHHHHHcCcCEEEecCC----CC
Q psy12516 121 MFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVP-PHNVTRVATALYKMGCYEISLGDT----IG 195 (327)
Q Consensus 121 ~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~-~e~l~~~~~~~~~~g~~~i~l~Dt----~G 195 (327)
+...++..+.+++.++.|++.|.+.........+ +..-+.- .+.+.++++.+.+.|+. +.+--. .-
T Consensus 77 -------~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~-~~~~~~~~~~~l~~l~~~a~~~gv~-l~~E~~~~~~~~ 147 (272)
T 2q02_A 77 -------NQLTEEVVKKTEGLLRDAQGVGARALVLCPLNDG-TIVPPEVTVEAIKRLSDLFARYDIQ-GLVEPLGFRVSS 147 (272)
T ss_dssp -------TSCCHHHHHHHHHHHHHHHHHTCSEEEECCCCSS-BCCCHHHHHHHHHHHHHHHHTTTCE-EEECCCCSTTCS
T ss_pred -------CCcHHHHHHHHHHHHHHHHHhCCCEEEEccCCCc-hhHHHHHHHHHHHHHHHHHHHcCCE-EEEEecCCCccc
Confidence 1111334667788888888888875432111000 0000011 44555666666677764 344322 22
Q ss_pred ccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHH-hcCceeeecccc-------CC-CCCCCCCCCC-
Q psy12516 196 VGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAME-FGISVFDSSIAG-------LG-GCPYARGASG- 262 (327)
Q Consensus 196 ~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~-~G~~~vd~s~~G-------~G-~~p~~~g~~G- 262 (327)
..++.++.+++..+- |.+.+.+ |.+.... .-...+.++. .=+.+|+..=.. .. .....+| .|
T Consensus 148 ~~~~~~~~~l~~~v~---~~~g~~~D~~h~~~~~~-~~~~~~~~l~~~~i~~vH~~D~~~~~~~~~~~~~~~~~~G-~G~ 222 (272)
T 2q02_A 148 LRSAVWAQQLIREAG---SPFKVLLDTFHHHLYEE-AEKEFASRIDISAIGLVHLSGVEDTRPTEALADEQRIMLS-EKD 222 (272)
T ss_dssp CCCHHHHHHHHHHHT---CCCEEEEEHHHHHHCTT-HHHHHHHHCCGGGEEEEEECBCCCCSCGGGCCGGGCBCCC-TTC
T ss_pred ccCHHHHHHHHHHhC---cCeEEEEEchHhhccCC-CchhhhhhCCHhHEEEEEeCCCcCCCCchhccccccccCC-CCC
Confidence 346777777666553 4333333 2222000 0113444442 112334432110 00 0011233 45
Q ss_pred CccHHHHHHHHHhCCCCCC
Q psy12516 263 NVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 263 n~~~e~~~~~l~~~g~~~~ 281 (327)
+.+...++..|++.||+..
T Consensus 223 ~id~~~~~~~L~~~gy~g~ 241 (272)
T 2q02_A 223 VMQNYQQVQRLENMGYRGI 241 (272)
T ss_dssp SSCHHHHHHHHHHTTCCSC
T ss_pred cccHHHHHHHHHhcCCCCc
Confidence 6999999999999888643
|
| >2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=92.54 E-value=1.5 Score=39.12 Aligned_cols=112 Identities=14% Similarity=0.102 Sum_probs=71.2
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccC---HH---HHHHHHHHHHHhcCCCeEEE--
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGT---PG---TMRLMLEDVLTVIPADRLAV-- 220 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~---P~---~~~~~~~~~~~~~~~~~l~~-- 220 (327)
++++...+. .|.. ..+.+.-..-++.+.+.|+|.|-+.=-.|.+. -. .+.+.+..+++..++.++-+
T Consensus 89 ~v~v~tVig----FP~G-~~~~~~Kv~E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIl 163 (281)
T 2a4a_A 89 KPKIACVIN----FPYG-TDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVII 163 (281)
T ss_dssp CSEEEEEES----TTTC-CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEEC
T ss_pred CceEEEEeC----CCCC-CCCHHHHHHHHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEE
Confidence 567655443 3433 45666666667788889999998877777443 34 67777888887765444221
Q ss_pred --eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 221 --HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 221 --H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
-.=+|.-.=...+..|+++|+|+|-+|-+ .+ +|++.+|++..+.+
T Consensus 164 Et~~L~d~e~i~~A~~ia~eaGADfVKTSTG-f~--------~~gAT~edv~lm~~ 210 (281)
T 2a4a_A 164 EVGELKTEDLIIKTTLAVLNGNADFIKTSTG-KV--------QINATPSSVEYIIK 210 (281)
T ss_dssp CHHHHCSHHHHHHHHHHHHTTTCSEEECCCS-CS--------SCCCCHHHHHHHHH
T ss_pred ecccCCcHHHHHHHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHH
Confidence 11123322235677789999999998753 22 36788888766554
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=5.2 Score=35.15 Aligned_cols=65 Identities=12% Similarity=0.095 Sum_probs=43.9
Q ss_pred HHHHHHHHcCcCEEEecC-CccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHc--CCcEEE
Q psy12516 2 KVASALYKMGCYEISLGD-TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF--GISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~a--G~~~id 72 (327)
+.++++.+.|+|.|-+.= ......+++++++++.+++.. ++++.+- ++- ..-+.+|+++ |++.|.
T Consensus 29 ~~a~~~v~~GAdiIDIg~g~~~v~~~ee~~rvv~~i~~~~-~~pisID---T~~--~~v~~aAl~a~~Ga~iIN 96 (262)
T 1f6y_A 29 EWARRQEEGGARALDLNVGPAVQDKVSAMEWLVEVTQEVS-NLTLCLD---STN--IKAIEAGLKKCKNRAMIN 96 (262)
T ss_dssp HHHHHHHHHTCSEEEEBCC----CHHHHHHHHHHHHHTTC-CSEEEEE---CSC--HHHHHHHHHHCSSCEEEE
T ss_pred HHHHHHHHCCCcEEEECCCCCCCChHHHHHHHHHHHHHhC-CCeEEEe---CCC--HHHHHHHHhhCCCCCEEE
Confidence 567889999999998873 223556777888888888754 4777653 332 2344566776 888875
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=92.43 E-value=1.6 Score=39.56 Aligned_cols=81 Identities=14% Similarity=0.077 Sum_probs=69.4
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.+.-|+| .++.++-.++++.+.+.. +.+||-.++ +|+..-++..+..|.++|
T Consensus 38 g~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~G 117 (315)
T 3si9_A 38 GAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAG 117 (315)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 578898889999888876 346777776 477888888899999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 118 adavlv 123 (315)
T 3si9_A 118 ADAVLV 123 (315)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 987654
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=92.40 E-value=1.1 Score=40.69 Aligned_cols=99 Identities=9% Similarity=0.006 Sum_probs=77.9
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .++.++-.++++.+.+... .+||..++-++..-++..+..|.++|+
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~~t~~ai~la~~A~~~Ga 107 (316)
T 3e96_A 28 GSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAGA 107 (316)
T ss_dssp CCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCcCHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999 5888888899998888764 478888876566677788888999999
Q ss_pred ceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 242 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 242 ~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
+.+=.. .|+.. .++-++++..++
T Consensus 108 davlv~------~P~y~----~~s~~~l~~~f~ 130 (316)
T 3e96_A 108 DAVMIH------MPIHP----YVTAGGVYAYFR 130 (316)
T ss_dssp SEEEEC------CCCCS----CCCHHHHHHHHH
T ss_pred CEEEEc------CCCCC----CCCHHHHHHHHH
Confidence 876542 24432 245677776665
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=92.39 E-value=1 Score=42.53 Aligned_cols=74 Identities=15% Similarity=0.126 Sum_probs=51.1
Q ss_pred CCChHHHHHHHH----HHHHcCcCE-----EEecCCCCc---------cCHHHHHHHHHHHHHhcCCCe-EEEeecCCcC
Q psy12516 167 AVPPHNVTRVAT----ALYKMGCYE-----ISLGDTIGV---------GTPGTMRLMLEDVLTVIPADR-LAVHCHDTYG 227 (327)
Q Consensus 167 r~~~e~l~~~~~----~~~~~g~~~-----i~l~Dt~G~---------~~P~~~~~~~~~~~~~~~~~~-l~~H~Hn~~g 227 (327)
.++|+...++++ .+.+.|+|. |.|+=..|. +.++.+ +.|++..+. | |.+-.|..-|
T Consensus 187 ~T~PeeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y~~~~ld~e~l----~~I~~~v~~-P~LVle~HGgSg 261 (420)
T 2fiq_A 187 ITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEA----QALAQWIEN-TRMVYEAHSTDY 261 (420)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSSCEECCCGGGG----HHHHHHHTT-SSCEEEESCCTT
T ss_pred CCCHHHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCCCCCCcCHHHH----HHHHHhcCC-CCEEEecCCCCC
Confidence 588998888887 666788775 334433332 334444 444444433 5 7877799999
Q ss_pred cHHHHHHHHHHhcCceee
Q psy12516 228 QALANILTAMEFGISVFD 245 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd 245 (327)
..-.+...+++.|+..|.
T Consensus 262 ~~~e~l~~~v~~Gi~kiN 279 (420)
T 2fiq_A 262 QTRTAYWELVRDHFAILK 279 (420)
T ss_dssp CCHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHHcCCCEEE
Confidence 999999999999998876
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=92.38 E-value=4 Score=36.69 Aligned_cols=67 Identities=16% Similarity=0.199 Sum_probs=43.7
Q ss_pred HHHHHHHHcCcCEEEec-CCccccCHHHHHHHHHHHHhh--cCCCeeEEEecCccchHHHHHHHHHH--cCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTV--IPADRLAVHCHDTYGQALANILTAME--FGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~-Dt~G~~~p~~~~~~~~~~~~~--~~~~~~~~H~h~~~g~~~~~~~~a~~--aG~~~id~ 73 (327)
+.++++.+.|+|.|-+. +......+..+.++++.+... ..++++.+-+-+ ..-+.+|++ +|++.|..
T Consensus 41 ~~A~~~v~~GAdiIDIg~g~~~v~~~eem~rvv~~i~~~~~~~~vpisIDT~~-----~~V~eaaL~~~~Ga~iINd 112 (300)
T 3k13_A 41 SIARQQVEDGALVIDVNMDDGLLDARTEMTTFLNLIMSEPEIARVPVMIDSSK-----WEVIEAGLKCLQGKSIVNS 112 (300)
T ss_dssp HHHHHHHHTTCSEEEEECCCTTSCHHHHHHHHHHHHHTCHHHHTSCEEEECSC-----HHHHHHHHHHCSSCCEEEE
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEeCCC-----HHHHHHHHHhcCCCCEEEe
Confidence 57888999999988776 333445567788888877631 124667665432 234466666 68877753
|
| >4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* | Back alignment and structure |
|---|
Probab=92.20 E-value=2.1 Score=39.54 Aligned_cols=101 Identities=12% Similarity=0.199 Sum_probs=79.7
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
+++.|.+.+.++++.+.+.|++.|.++-|+| .++.++-.++++.+.+... .+++..++ +|+..-++..+..|.++
T Consensus 74 dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~ 153 (360)
T 4dpp_A 74 DGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAV 153 (360)
T ss_dssp TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHc
Confidence 3579999999999999999999999999999 5888888888988888764 46777766 46778888888889999
Q ss_pred cCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 240 GISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 240 G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
|++.+=..- |+. ..++-++++..++.
T Consensus 154 Gadavlvv~------PyY----~k~sq~gl~~hf~~ 179 (360)
T 4dpp_A 154 GMHAALHIN------PYY----GKTSIEGLIAHFQS 179 (360)
T ss_dssp TCSEEEEEC------CCS----SCCCHHHHHHHHHT
T ss_pred CCCEEEEcC------CCC----CCCCHHHHHHHHHH
Confidence 998875432 332 22566788877764
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.02 E-value=1.6 Score=39.55 Aligned_cols=99 Identities=11% Similarity=0.018 Sum_probs=77.7
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .++.++-.++++.+.+.. +.+||-+++ +|+..-++..+..|.++|
T Consensus 40 g~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~G 119 (315)
T 3na8_A 40 GGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLG 119 (315)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 578899899999888876 346777776 477788888899999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
++.+=..- |+.. .++-++++..++
T Consensus 120 adavlv~~------P~y~----~~s~~~l~~~f~ 143 (315)
T 3na8_A 120 AEAVMVLP------ISYW----KLNEAEVFQHYR 143 (315)
T ss_dssp CSEEEECC------CCSS----CCCHHHHHHHHH
T ss_pred CCEEEECC------CCCC----CCCHHHHHHHHH
Confidence 98765432 3322 134566666555
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=92.00 E-value=2.5 Score=37.94 Aligned_cols=82 Identities=16% Similarity=0.178 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+||..++= |+..-++..+..|.++|
T Consensus 27 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G 106 (303)
T 2wkj_A 27 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG 106 (303)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCC
Confidence 579999999999999999999999999999 5889999999998888763 477877765 46677788888899999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 107 adavlv~ 113 (303)
T 2wkj_A 107 FDAVSAV 113 (303)
T ss_dssp CSEEEEE
T ss_pred CCEEEec
Confidence 9986543
|
| >3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=91.97 E-value=2.7 Score=37.91 Aligned_cols=109 Identities=12% Similarity=0.112 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+...+.+. ...+.+|..+-++.+++.+ ....|.+. .+..
T Consensus 24 g~iD~~~l~~lv~-~li~~Gv~Gl~v~GtTGE~-----~~Lt~~Er~~v~~~~v~~~--grvpViaG---------vg~~ 86 (313)
T 3dz1_A 24 GKIDDVSIDRLTD-FYAEVGCEGVTVLGILGEA-----PKLDAAEAEAVATRFIKRA--KSMQVIVG---------VSAP 86 (313)
T ss_dssp SCBCHHHHHHHHH-HHHHTTCSEEEESTGGGTG-----GGSCHHHHHHHHHHHHHHC--TTSEEEEE---------CCCS
T ss_pred CCcCHHHHHHHHH-HHHHCCCCEEEeCccCcCh-----hhCCHHHHHHHHHHHHHHc--CCCcEEEe---------cCCC
Confidence 5666665544433 3456777776666555542 2234444333333333333 22333211 1123
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~ 214 (327)
+.++..++++.+.+.|+|.+.+.--.-..+++.+.+.++.+.+..+
T Consensus 87 ~t~~ai~la~~A~~~Gadavlv~~P~~~~s~~~l~~~f~~va~a~~ 132 (313)
T 3dz1_A 87 GFAAMRRLARLSMDAGAAGVMIAPPPSLRTDEQITTYFRQATEAIG 132 (313)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCTTCCSHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCC
Confidence 4556666666666666665544433333455666666666655543
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=91.95 E-value=3.2 Score=35.46 Aligned_cols=91 Identities=16% Similarity=0.123 Sum_probs=55.3
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc--CcCEEEec----CCCCccCHHHHHHHHHHHHHhc
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM--GCYEISLG----DTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~--g~~~i~l~----Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+.++.+++.|+.+...+ .| .++.+.+ +.+.+. ++|.|.+- -+.|...+....+.++.+++..
T Consensus 104 ~~~~~i~~~g~~igv~~-----~p---~t~~e~~----~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~ 171 (228)
T 1h1y_A 104 ELIQSIKAKGMRPGVSL-----RP---GTPVEEV----FPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY 171 (228)
T ss_dssp HHHHHHHHTTCEEEEEE-----CT---TSCGGGG----HHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC
T ss_pred HHHHHHHHcCCCEEEEE-----eC---CCCHHHH----HHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhc
Confidence 44566677788775322 11 1233333 334454 78877762 2224444555666688888877
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
++.|+.+ +.|....|.-.++++|+|.+=+
T Consensus 172 ~~~pi~v----~GGI~~~ni~~~~~aGaD~vvv 200 (228)
T 1h1y_A 172 PSLDIEV----DGGLGPSTIDVAASAGANCIVA 200 (228)
T ss_dssp TTSEEEE----ESSCSTTTHHHHHHHTCCEEEE
T ss_pred CCCCEEE----ECCcCHHHHHHHHHcCCCEEEE
Confidence 5566665 4577778888889999987543
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.63 Score=42.12 Aligned_cols=81 Identities=14% Similarity=0.147 Sum_probs=70.3
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+.. +.+|+..++ +|+..-++..+..|.++|
T Consensus 24 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G 103 (309)
T 3fkr_A 24 GDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLG 103 (309)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999 588999899999888876 447888885 578888899999999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 104 adavlv 109 (309)
T 3fkr_A 104 AAMVMA 109 (309)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 987654
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=91.90 E-value=1.7 Score=39.31 Aligned_cols=99 Identities=13% Similarity=0.083 Sum_probs=77.3
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+||-.++ +|+..-++..+..|.++|
T Consensus 39 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~G 118 (314)
T 3qze_A 39 GRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGG 118 (314)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999 5889998999998888763 46777766 467888888899999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
++.+=..- |+.. .++-++++..++
T Consensus 119 adavlv~~------P~y~----~~s~~~l~~~f~ 142 (314)
T 3qze_A 119 ADACLLVT------PYYN----KPTQEGMYQHFR 142 (314)
T ss_dssp CSEEEEEC------CCSS----CCCHHHHHHHHH
T ss_pred CCEEEEcC------CCCC----CCCHHHHHHHHH
Confidence 98765432 3222 134466666555
|
| >1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A* | Back alignment and structure |
|---|
Probab=91.85 E-value=7 Score=35.21 Aligned_cols=46 Identities=9% Similarity=0.051 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY 186 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~ 186 (327)
++++.+.++.+++.|+.+.+.... .+ ..+.+++.++++.+.+.|++
T Consensus 145 ~~~v~~~i~~l~~~g~~v~i~~vv---~~---g~n~~ei~~~~~~~~~~g~~ 190 (340)
T 1tv8_A 145 ATTILEQIDYATSIGLNVKVNVVI---QK---GINDDQIIPMLEYFKDKHIE 190 (340)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEEE---CT---TTTGGGHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEE---eC---CCCHHHHHHHHHHHHhcCCe
Confidence 445566677778888866544322 11 13566788888888888887
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=91.78 E-value=4.5 Score=34.75 Aligned_cols=97 Identities=16% Similarity=0.119 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHcCcCEEEecCC--CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCceeeecc
Q psy12516 172 NVTRVATALYKMGCYEISLGDT--IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFDSSI 248 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt--~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd~s~ 248 (327)
...+.++++.+.|++.|.+.++ .|...... .++++.+++..+ +|+..- .|.. ..+.....+.|++.|=..-
T Consensus 153 ~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~-~~~i~~l~~~~~-ipvia~----GGI~~~~d~~~~~~~Gadgv~vgs 226 (252)
T 1ka9_F 153 HAVEWAVKGVELGAGEILLTSMDRDGTKEGYD-LRLTRMVAEAVG-VPVIAS----GGAGRMEHFLEAFQAGAEAALAAS 226 (252)
T ss_dssp EHHHHHHHHHHHTCCEEEEEETTTTTTCSCCC-HHHHHHHHHHCS-SCEEEE----SCCCSHHHHHHHHHTTCSEEEESH
T ss_pred cHHHHHHHHHHcCCCEEEEecccCCCCcCCCC-HHHHHHHHHHcC-CCEEEe----CCCCCHHHHHHHHHCCCHHHHHHH
Confidence 3456677788889998777543 34332211 456677776653 455442 2444 3677777788887653211
Q ss_pred ccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCC
Q psy12516 249 AGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283 (327)
Q Consensus 249 ~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d 283 (327)
. - -.+..+.++....|++.|+.+..|
T Consensus 227 a---l------~~~~~~~~~~~~~l~~~~~~~~~~ 252 (252)
T 1ka9_F 227 V---F------HFGEIPIPKLKRYLAEKGVHVRLD 252 (252)
T ss_dssp H---H------HTTSSCHHHHHHHHHHTTCCBCCC
T ss_pred H---H------HcCCCCHHHHHHHHHHCCCCcCCC
Confidence 1 0 123458999999999988876543
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.84 Score=41.17 Aligned_cols=110 Identities=16% Similarity=0.123 Sum_probs=74.2
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC---------CCCChHHHHHHHHHHHHcCcCEEEe--cCCCCccC
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE---------GAVPPHNVTRVATALYKMGCYEISL--GDTIGVGT 198 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~---------~r~~~e~l~~~~~~~~~~g~~~i~l--~Dt~G~~~ 198 (327)
..+|+++..++++++|+..|+.|++-+...-|.++. -.++|++..+++ +.|+|.+.+ .-..|.-.
T Consensus 125 p~eENi~~Tk~vv~~ah~~gvsVEaElG~igG~Edgv~~~~~~~~~yT~Peea~~Fv----~TgvD~LAvaiGt~HG~Yk 200 (306)
T 3pm6_A 125 SKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGVLTTPEESEEFV----ATGINWLAPAFGNVHGNYG 200 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCEEEECSSBCCCCBTTBCCCTTCCCBCCCHHHHHHHH----TTTCSEECCCSSCCSSCCC
T ss_pred CHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccccccccCCCHHHHHHHH----HcCCCEEEEEcCccccCcC
Confidence 457889999999999999999998876664343332 146888877765 489995433 23444332
Q ss_pred H---HHHHHHHHHHHHhc-CCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 199 P---GTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 P---~~~~~~~~~~~~~~-~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
| .==.++++.+++.+ +++||.+|.= -|..-.....|+..|+..|.
T Consensus 201 ~~~p~Ld~~~L~~I~~~v~~~vpLVlHGg--SG~p~e~i~~ai~~GV~KiN 249 (306)
T 3pm6_A 201 PRGVQLDYERLQRINEAVGERVGLVLHGA--DPFTKEIFEKCIERGVAKVN 249 (306)
T ss_dssp TTCCCCCHHHHHHHHHHHTTTSEEEECSC--TTCCHHHHHHHHHTTEEEEE
T ss_pred CCCCccCHHHHHHHHHHhCCCCCEEeeCC--CCCCHHHHHHHHHcCCeEEE
Confidence 2 11123456666666 3678887764 46677788999999987654
|
| >3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=91.77 E-value=0.65 Score=42.23 Aligned_cols=81 Identities=14% Similarity=0.053 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .++.++-.++++.+.+.. +.++|..++ +|+..-++..+..|.++|
T Consensus 27 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G 106 (318)
T 3qfe_A 27 DTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAG 106 (318)
T ss_dssp TEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 578999999999999999999999999999 488999899999888876 446777776 578888899999999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
+|.+=.
T Consensus 107 adavlv 112 (318)
T 3qfe_A 107 ANYVLV 112 (318)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 987654
|
| >1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1 | Back alignment and structure |
|---|
Probab=91.70 E-value=0.1 Score=46.19 Aligned_cols=120 Identities=18% Similarity=0.205 Sum_probs=74.9
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccC-CCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC-
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGC-PYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA- 215 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~-~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~- 215 (327)
+++.++.+++.|+.+. +|. .++.-+....+.++.+.+.++|.+.|.+.|-+-.+.+++-.++|+.+++.+.-
T Consensus 82 l~ekI~l~~~~gV~v~------~GGTlfE~~l~qg~~~~yl~~~k~lGF~~IEISdGti~l~~~~~~~lI~~a~~~f~Vl 155 (276)
T 1u83_A 82 LEEKISTLKEHDITFF------FGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDEFLVL 155 (276)
T ss_dssp HHHHHHHHHHTTCEEE------ECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTTSEEE
T ss_pred HHHHHHHHHHcCCeEe------CCcHHHHHHHHcCcHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhhcEEe
Confidence 7778999999999985 222 11211222367788889999999999999999999999999999988766421
Q ss_pred CeEEE-----eecCCcCcHHHHHHHHHHhcCcee--ee---ccccCCCCCCCCCCCCCccHHHH
Q psy12516 216 DRLAV-----HCHDTYGQALANILTAMEFGISVF--DS---SIAGLGGCPYARGASGNVATEDL 269 (327)
Q Consensus 216 ~~l~~-----H~Hn~~g~a~an~l~a~~~G~~~v--d~---s~~G~G~~p~~~g~~Gn~~~e~~ 269 (327)
.+++. ..--+...-+......+++||+.| ++ .-.|+-+ ..|+.-.+.+
T Consensus 156 ~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEaRESG~~Gi~~------~~g~~r~d~v 213 (276)
T 1u83_A 156 SEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEARESGTGGICS------SSGDVRFQIV 213 (276)
T ss_dssp EECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC------------------------CCH
T ss_pred eeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEeeeccCCCCccC------CCCCCcHHHH
Confidence 11111 222356777888999999999985 55 1126655 5677666555
|
| >3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831} | Back alignment and structure |
|---|
Probab=91.62 E-value=1.7 Score=39.39 Aligned_cols=82 Identities=11% Similarity=0.024 Sum_probs=67.8
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+||..++=.+..-++..+..|.++|+
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~st~~ai~la~~A~~~Ga 107 (314)
T 3d0c_A 28 REIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGYSVDTAIELGKSAIDSGA 107 (314)
T ss_dssp CCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCcCHHHHHHHHHHHHHcCC
Confidence 579999999999999999999999999999 5889998999998888764 477777665455566777888889999
Q ss_pred ceeeec
Q psy12516 242 SVFDSS 247 (327)
Q Consensus 242 ~~vd~s 247 (327)
+.+=..
T Consensus 108 davlv~ 113 (314)
T 3d0c_A 108 DCVMIH 113 (314)
T ss_dssp SEEEEC
T ss_pred CEEEEC
Confidence 976543
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=91.52 E-value=0.82 Score=41.31 Aligned_cols=81 Identities=9% Similarity=0.007 Sum_probs=69.9
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+.. +.+++..++ +|+..-++..+..|.++|
T Consensus 30 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G 109 (307)
T 3s5o_A 30 AEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVG 109 (307)
T ss_dssp SCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999 488999999999998877 446777776 577888888999999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 110 adavlv 115 (307)
T 3s5o_A 110 ADAAMV 115 (307)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 987654
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=91.31 E-value=0.91 Score=41.80 Aligned_cols=97 Identities=15% Similarity=0.144 Sum_probs=69.6
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHH--HHHHHHhcCCC
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLM--LEDVLTVIPAD 216 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~--~~~~~~~~~~~ 216 (327)
.++++++.+.|..|- ++. +-.+.+++...++.+.+.|.+.+-+--+.+.-+|....++ +..+++.+|..
T Consensus 138 ~~LL~~va~~gkPvi--Lst-------Gmat~~Ei~~Ave~i~~~G~~iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~l 208 (349)
T 2wqp_A 138 YPLIKLVASFGKPII--LST-------GMNSIESIKKSVEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDA 208 (349)
T ss_dssp HHHHHHHHTTCSCEE--EEC-------TTCCHHHHHHHHHHHHHHTCCEEEEECCCCSSCCGGGCCTHHHHHHHHHCTTS
T ss_pred HHHHHHHHhcCCeEE--EEC-------CCCCHHHHHHHHHHHHHcCCCEEEEeccCCCCCChhhcCHHHHHHHHHHCCCC
Confidence 345677777788875 222 2358999999999999998865444345555555554443 78899988668
Q ss_pred eEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 217 RLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 217 ~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
|+++-.|-. | ...+++|+.+||+.|+.=
T Consensus 209 pVg~sdHt~-G--~~~~~AAvAlGA~iIEkH 236 (349)
T 2wqp_A 209 IIGLSDHTL-D--NYACLGAVALGGSILERH 236 (349)
T ss_dssp EEEEECCSS-S--SHHHHHHHHHTCCEEEEE
T ss_pred CEEeCCCCC-c--HHHHHHHHHhCCCEEEeC
Confidence 999866654 4 788899999999987643
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=3.2 Score=37.26 Aligned_cols=82 Identities=17% Similarity=0.187 Sum_probs=68.7
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+..++= |+..-++..+..|.++|
T Consensus 28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G 107 (301)
T 1xky_A 28 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG 107 (301)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 5889998999998887764 467776554 57777888888999999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 108 adavlv~ 114 (301)
T 1xky_A 108 VDAVMLV 114 (301)
T ss_dssp CSEEEEE
T ss_pred CCEEEEc
Confidence 9976543
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=91.22 E-value=0.97 Score=38.84 Aligned_cols=182 Identities=14% Similarity=0.135 Sum_probs=96.0
Q ss_pred HHHHHHcCcCEEEecCCc--cccCHHHHHHHHHHHH---hhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCC
Q psy12516 4 ASALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVL---TVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 78 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt~--G~~~p~~~~~~~~~~~---~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~gl 78 (327)
+..+.+.|+|+|.||+.. |-.||.. -+++.++ +... +| +-+-++.=
T Consensus 14 a~~A~~~GAdRIELc~~L~~GGlTPS~--g~i~~~~~~~~~~~-ip--------------------------V~vMIRPR 64 (224)
T 2bdq_A 14 LTRLDKAIISRVELCDNLAVGGTTPSY--GVIKEANQYLHEKG-IS--------------------------VAVMIRPR 64 (224)
T ss_dssp GGGCCTTTCCEEEEEBCGGGTCBCCCH--HHHHHHHHHHHHTT-CE--------------------------EEEECCSS
T ss_pred HHHHHHcCCCEEEEcCCcccCCcCCCH--HHHHHHHHhhhhcC-Cc--------------------------eEEEECCC
Confidence 455678899999999964 8888874 2234443 3332 22 33445433
Q ss_pred CCCCCCCCccCCCcHHHHHHHhh--hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 79 GGCPYARGASGNVATEDLVYMLE--GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~--~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
|+ .|. -+.+++-.+.. +...+.|.|.+.+=.-..+. ..+ .+.++++++.++ |+.+. +
T Consensus 65 ~G-dF~------Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg------~iD----~~~~~~Li~~a~--~~~vT--F 123 (224)
T 2bdq_A 65 GG-NFV------YNDLELRIMEEDILRAVELESDALVLGILTSNN------HID----TEAIEQLLPATQ--GLPLV--F 123 (224)
T ss_dssp SS-CSC------CCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS------SBC----HHHHHHHHHHHT--TCCEE--E
T ss_pred CC-CCc------CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC------CcC----HHHHHHHHHHhC--CCeEE--E
Confidence 32 111 12233332222 24566777765431111110 011 456777787764 66654 3
Q ss_pred eeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccC---HHHHHHHHHHHHHhcCC-CeEEEeecCCcCcHHHH
Q psy12516 157 SCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGT---PGTMRLMLEDVLTVIPA-DRLAVHCHDTYGQALAN 232 (327)
Q Consensus 157 ~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~---P~~~~~~~~~~~~~~~~-~~l~~H~Hn~~g~a~an 232 (327)
-.+| + ..+.....+..+++.++|+++|- |+|... ..+-.+.++.+.+...+ +.|-. =-|.-..|
T Consensus 124 HRAF----D-~~~~~d~~~ale~L~~lGv~rIL---TSG~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~----GgGV~~~N 191 (224)
T 2bdq_A 124 HMAF----D-VIPKSDQKKSIDQLVALGFTRIL---LHGSSNGEPIIENIKHIKALVEYANNRIEIMV----GGGVTAEN 191 (224)
T ss_dssp CGGG----G-GSCTTTHHHHHHHHHHTTCCEEE---ECSCSSCCCGGGGHHHHHHHHHHHTTSSEEEE----CSSCCTTT
T ss_pred ECch----h-ccCCcCHHHHHHHHHHcCCCEEE---CCCCCCCCcHHHHHHHHHHHHHhhCCCeEEEe----CCCCCHHH
Confidence 3333 1 12123345668899999999987 776543 34444455555544322 22322 01444556
Q ss_pred HHHHH-HhcCceeeec
Q psy12516 233 ILTAM-EFGISVFDSS 247 (327)
Q Consensus 233 ~l~a~-~~G~~~vd~s 247 (327)
.-.-+ +.|++.|+.|
T Consensus 192 i~~l~~~tGv~e~H~s 207 (224)
T 2bdq_A 192 YQYICQETGVKQAHGT 207 (224)
T ss_dssp HHHHHHHHTCCEEEET
T ss_pred HHHHHHhhCCCEEccc
Confidence 65555 5799999976
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=91.18 E-value=2.5 Score=38.76 Aligned_cols=82 Identities=9% Similarity=0.005 Sum_probs=69.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .++|..++= |+..-++..+..|.++|
T Consensus 47 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G 126 (343)
T 2v9d_A 47 GQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAG 126 (343)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 4889998999998888763 467777654 67777888888999999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 127 adavlv~ 133 (343)
T 2v9d_A 127 ADGIVVI 133 (343)
T ss_dssp CSEEEEE
T ss_pred CCEEEEC
Confidence 9986543
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=91.16 E-value=3.3 Score=37.77 Aligned_cols=99 Identities=14% Similarity=0.047 Sum_probs=76.8
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+||..++= |+..-++..+..|.++|
T Consensus 50 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G 129 (332)
T 2r8w_A 50 GRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAG 129 (332)
T ss_dssp CCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 5889999999998888764 467776554 57777888888999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
++.+=..- |+... ++-++++..++
T Consensus 130 adavlv~~------P~Y~~----~s~~~l~~~f~ 153 (332)
T 2r8w_A 130 ADALLLAP------VSYTP----LTQEEAYHHFA 153 (332)
T ss_dssp CSEEEECC------CCSSC----CCHHHHHHHHH
T ss_pred CCEEEECC------CCCCC----CCHHHHHHHHH
Confidence 99774432 33211 34566666554
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=91.05 E-value=2.9 Score=37.28 Aligned_cols=83 Identities=16% Similarity=0.117 Sum_probs=69.2
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
++..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+-.++ +|+..-++..+..|.++
T Consensus 15 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~ 94 (289)
T 2yxg_A 15 NKEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDV 94 (289)
T ss_dssp TTEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999 5889998999998888764 36777665 45777788888999999
Q ss_pred cCceeeec
Q psy12516 240 GISVFDSS 247 (327)
Q Consensus 240 G~~~vd~s 247 (327)
|++.+=..
T Consensus 95 Gadavlv~ 102 (289)
T 2yxg_A 95 GADAVLSI 102 (289)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEC
Confidence 99986543
|
| >1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A | Back alignment and structure |
|---|
Probab=91.03 E-value=1.6 Score=38.43 Aligned_cols=112 Identities=13% Similarity=0.013 Sum_probs=70.8
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHHHHHHHhcC--CCeE----E
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIP--ADRL----A 219 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~~~~~~~~~--~~~l----~ 219 (327)
++++...+.+ |.. ..+.+.-..-++.+.+.|+|.|-+.=-.|. -.-..+.+.+..+++..+ +.++ +
T Consensus 68 ~v~v~tVigF----P~G-~~~~~~Kv~E~~~Av~~GAdEIDmVinig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlE 142 (260)
T 1p1x_A 68 EIRIATVTNF----PHG-NDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIE 142 (260)
T ss_dssp TSEEEEEEST----TTC-CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECC
T ss_pred CceEEEEeCC----CCC-CCcHHHHHHHHHHHHHcCCCEEEEeccHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEe
Confidence 5677654433 432 456666666677888899999887777773 345677777888877643 2342 2
Q ss_pred EeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 220 VHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 220 ~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
.-.=+|.-.=...+..|+++|+|+|-+|-. .+ +|++++|++..+.+
T Consensus 143 t~~L~d~e~i~~a~~ia~eaGADfVKTSTG-f~--------~~gAt~e~v~lm~~ 188 (260)
T 1p1x_A 143 TGELKDEALIRKASEISIKAGADFIKTSTG-KV--------AVNATPESARIMME 188 (260)
T ss_dssp HHHHCSHHHHHHHHHHHHHTTCSEEECCCS-CS--------SCCCCHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHH
Confidence 211123322235677789999999998752 22 36789997665554
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=90.89 E-value=7.3 Score=33.61 Aligned_cols=185 Identities=12% Similarity=0.100 Sum_probs=102.9
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-c-CCcEEEecccCCCCCCCCCCccCCCcHHHHHHH
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-F-GISVFDSSIAGLGGCPYARGASGNVATEDLVYM 99 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-a-G~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~ 99 (327)
...++.+++.+++..++.-. ..+..| -..+ .+...++ . ++. +-+.++ + ..|..+++..+.
T Consensus 31 p~~t~~~i~~l~~~a~~~~~-~aVcv~-----p~~v-~a~~~l~~~~~v~-v~tvig-F--------P~G~~~~~~k~~- 92 (234)
T 1n7k_A 31 PRATEEDVRNLVREASDYGF-RCAVLT-----PVYT-VKISGLAEKLGVK-LCSVIG-F--------PLGQAPLEVKLV- 92 (234)
T ss_dssp TTCCHHHHHHHHHHHHHHTC-SEEEEC-----HHHH-HHHHHHHHHHTCC-EEEEES-T--------TTCCSCHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHhCC-CEEEEc-----hHHh-eeehHhCCCCCce-EEEEeC-C--------CCCCCcHHHHHH-
Confidence 34577888888887777522 222222 1222 3333342 2 443 333332 2 123445543322
Q ss_pred hhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHH
Q psy12516 100 LEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATA 179 (327)
Q Consensus 100 l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~ 179 (327)
--+.+++.|.|.+.+......... +..+.+..+.+.+++.|..+.+.+... ..+++++...++.
T Consensus 93 e~~~Av~~GAdEID~vinig~~~~---------~v~~ei~~v~~a~~~~g~~lKvIlEt~-------~L~~e~i~~a~ri 156 (234)
T 1n7k_A 93 EAQTVLEAGATELDVVPHLSLGPE---------AVYREVSGIVKLAKSYGAVVKVILEAP-------LWDDKTLSLLVDS 156 (234)
T ss_dssp HHHHHHHHTCCEEEECCCGGGCHH---------HHHHHHHHHHHHHHHTTCEEEEECCGG-------GSCHHHHHHHHHH
T ss_pred HHHHHHHcCCCEEEEeccchHHHH---------HHHHHHHHHHHHHhhcCCeEEEEEecc-------CCCHHHHHHHHHH
Confidence 224567778887765433332211 457778888888888888765544432 2467899999999
Q ss_pred HHHcCcCEEEecCCC---CccCHHHHHHHHHHHHHhcCCCeEEEeec-CCcCcHHHHHHHHHHhcCceeeec
Q psy12516 180 LYKMGCYEISLGDTI---GVGTPGTMRLMLEDVLTVIPADRLAVHCH-DTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 180 ~~~~g~~~i~l~Dt~---G~~~P~~~~~~~~~~~~~~~~~~l~~H~H-n~~g~a~an~l~a~~~G~~~vd~s 247 (327)
..++|+|-|--.-.. |-.+++++.- +.+++..+ +++-.=.= .+ ...+++-+++|+++|=+|
T Consensus 157 a~eaGADfVKTsTG~~~~~gAt~~dv~l--~~m~~~v~-v~VKaaGGirt----~~~al~~i~aGa~RiG~S 221 (234)
T 1n7k_A 157 SRRAGADIVKTSTGVYTKGGDPVTVFRL--ASLAKPLG-MGVKASGGIRS----GIDAVLAVGAGADIIGTS 221 (234)
T ss_dssp HHHTTCSEEESCCSSSCCCCSHHHHHHH--HHHHGGGT-CEEEEESSCCS----HHHHHHHHHTTCSEEEET
T ss_pred HHHhCCCEEEeCCCCCCCCCCCHHHHHH--HHHHHHHC-CCEEEecCCCC----HHHHHHHHHcCccccchH
Confidence 999999987654211 3345666443 11444444 44433210 01 366777779999977554
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=90.80 E-value=0.83 Score=42.31 Aligned_cols=73 Identities=12% Similarity=0.106 Sum_probs=54.5
Q ss_pred hHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 170 PHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 170 ~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
++...+.++++.++|+|.|.+-=+.| .+..+.+.++.+|+.+|+++|.. -. .....+..++++|+|.|.++.
T Consensus 98 ~~~~~e~~~~a~~aGvdvI~id~a~G--~~~~~~e~I~~ir~~~~~~~Vi~G~V-----~T~e~A~~a~~aGaD~I~Vg~ 170 (361)
T 3r2g_A 98 TENELQRAEALRDAGADFFCVDVAHA--HAKYVGKTLKSLRQLLGSRCIMAGNV-----ATYAGADYLASCGADIIKAGI 170 (361)
T ss_dssp SHHHHHHHHHHHHTTCCEEEEECSCC--SSHHHHHHHHHHHHHHTTCEEEEEEE-----CSHHHHHHHHHTTCSEEEECC
T ss_pred CHHHHHHHHHHHHcCCCEEEEeCCCC--CcHhHHHHHHHHHHhcCCCeEEEcCc-----CCHHHHHHHHHcCCCEEEEcC
Confidence 35667889999999999877633344 35667788999999888777765 12 235668889999999999854
Q ss_pred c
Q psy12516 249 A 249 (327)
Q Consensus 249 ~ 249 (327)
.
T Consensus 171 g 171 (361)
T 3r2g_A 171 G 171 (361)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472} | Back alignment and structure |
|---|
Probab=90.70 E-value=1.3 Score=40.81 Aligned_cols=97 Identities=13% Similarity=0.157 Sum_probs=68.3
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHH--HHHHHHHhcCCCe
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRL--MLEDVLTVIPADR 217 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~--~~~~~~~~~~~~~ 217 (327)
++++++.+.|..|- ++. +-.+.+++...++.+.+.|.+.+-+--+.+.-+|....+ .+..+++.+|+.|
T Consensus 126 pLL~~va~~gKPvi--Lst-------Gmstl~Ei~~Ave~i~~~g~~viLlhC~s~YPt~~~~~nL~aI~~Lk~~fp~lp 196 (350)
T 3g8r_A 126 PLLERIARSDKPVV--AST-------AGARREDIDKVVSFMLHRGKDLTIMHCVAEYPTPDDHLHLARIKTLRQQYAGVR 196 (350)
T ss_dssp HHHHHHHTSCSCEE--EEC-------TTCCHHHHHHHHHHHHTTTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSE
T ss_pred HHHHHHHhhCCcEE--EEC-------CCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCcccCCHHHHHHHHHHCCCCC
Confidence 45677777888875 232 235899999999999988876443334556655654333 4788999998889
Q ss_pred EEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 218 LAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 218 l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+++--|-.-+. .+-+++|+.+||+.|+.
T Consensus 197 VG~SdHt~g~~-~~~~~AAvAlGA~vIEk 224 (350)
T 3g8r_A 197 IGYSTHEDPDL-MEPIMLAVAQGATVFEK 224 (350)
T ss_dssp EEEEECCCSSC-CHHHHHHHHTTCCEEEE
T ss_pred EEcCCCCCCCc-cHHHHHHHHcCCCEEEE
Confidence 99977875321 34568999999998754
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=90.65 E-value=7.4 Score=34.66 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHH--cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 136 ERFSEVVSTALT--NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 136 ~~~~~~v~~a~~--~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
+.+.+.++.+++ .|+.+...+. +|.|. -+.+.+.+..+.+.+.+++.+.+
T Consensus 139 e~~~~~i~~l~~~~~gi~i~~~~I--vG~Pg---Et~ed~~~t~~~l~~l~~~~v~~ 190 (304)
T 2qgq_A 139 EELKKMLSSIRERFPDAVLRTSII--VGFPG---ETEEDFEELKQFVEEIQFDKLGA 190 (304)
T ss_dssp HHHHHHHHHHHHHCTTCEEEEEEE--ECCTT---CCHHHHHHHHHHHHHHCCSEEEE
T ss_pred HHHHHHHHHHHhhCCCCEEEEEEE--EeCCC---CCHHHHHHHHHHHHHcCCCEEEE
Confidence 445666777777 6887765554 34453 36788888888899999886553
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=90.60 E-value=4.1 Score=36.53 Aligned_cols=82 Identities=17% Similarity=0.117 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+-.++ +|+..-++..+..|.++|
T Consensus 32 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~G 111 (304)
T 3cpr_A 32 GDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAG 111 (304)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 5888888899998887764 46777655 457777888889999999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 112 adavlv~ 118 (304)
T 3cpr_A 112 ADGLLVV 118 (304)
T ss_dssp CSEEEEE
T ss_pred CCEEEEC
Confidence 9976543
|
| >3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=90.54 E-value=3.1 Score=37.58 Aligned_cols=81 Identities=15% Similarity=0.088 Sum_probs=68.4
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .++.++-.++++.+.+... .+++-.++ +|+..-++..+..|.++|
T Consensus 23 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G 102 (311)
T 3h5d_A 23 GSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFG 102 (311)
T ss_dssp SSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSC
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999 5889999999999988864 46788776 467777888888888988
Q ss_pred C-ceeee
Q psy12516 241 I-SVFDS 246 (327)
Q Consensus 241 ~-~~vd~ 246 (327)
+ +.+=.
T Consensus 103 a~davlv 109 (311)
T 3h5d_A 103 GFAAGLA 109 (311)
T ss_dssp CCSEEEE
T ss_pred CCcEEEE
Confidence 6 87644
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=3.5 Score=36.82 Aligned_cols=82 Identities=11% Similarity=0.111 Sum_probs=68.8
Q ss_pred CCCChHHHHHHHHHHHH-cCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 166 GAVPPHNVTRVATALYK-MGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~-~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
+..|.+.+.++++.+.+ .|++.|.++-|+| .+++++-.++++.+.+... .+|+..++ +|+..-++..+..|.++
T Consensus 19 g~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~ 98 (293)
T 1f6k_A 19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL 98 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhc
Confidence 57999999999999999 9999999999999 4889998999998888764 46777655 45777788888889999
Q ss_pred cCceeeec
Q psy12516 240 GISVFDSS 247 (327)
Q Consensus 240 G~~~vd~s 247 (327)
|++.+=..
T Consensus 99 Gadavlv~ 106 (293)
T 1f6k_A 99 GYDCLSAV 106 (293)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEC
Confidence 99987554
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=90.45 E-value=7.2 Score=33.38 Aligned_cols=197 Identities=14% Similarity=0.049 Sum_probs=105.2
Q ss_pred CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHH
Q psy12516 43 DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEM 121 (327)
Q Consensus 43 ~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~ 121 (327)
.+++++...-..+.+...++.+ ++|.+.||.....+ |+. ...++ +..+++...+.|+....+.....
T Consensus 18 ~klg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~---~~~------~~~~~-~~~~~~~l~~~gl~i~~~~~~~~-- 85 (257)
T 3lmz_A 18 FHLGMAGYTFVNFDLDTTLKTLERLDIHYLCIKDFHL---PLN------STDEQ-IRAFHDKCAAHKVTGYAVGPIYM-- 85 (257)
T ss_dssp SEEEECGGGGTTSCHHHHHHHHHHTTCCEEEECTTTS---CTT------CCHHH-HHHHHHHHHHTTCEEEEEEEEEE--
T ss_pred eEEEEEEEeecCCCHHHHHHHHHHhCCCEEEEecccC---CCC------CCHHH-HHHHHHHHHHcCCeEEEEecccc--
Confidence 7899988888888888887777 79999999765522 211 12222 22233333444444322211100
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCC--C--cc
Q psy12516 122 FSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTI--G--VG 197 (327)
Q Consensus 122 ~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~--G--~~ 197 (327)
+.++.+++.++.|++.|.+.... . | ..+.+.++++.+.+.|+.. .+--.. + ..
T Consensus 86 -----------~~~~~~~~~i~~A~~lGa~~v~~---~---p-----~~~~l~~l~~~a~~~gv~l-~lEn~~~~~~~~~ 142 (257)
T 3lmz_A 86 -----------KSEEEIDRAFDYAKRVGVKLIVG---V---P-----NYELLPYVDKKVKEYDFHY-AIHLHGPDIKTYP 142 (257)
T ss_dssp -----------CSHHHHHHHHHHHHHHTCSEEEE---E---E-----CGGGHHHHHHHHHHHTCEE-EEECCCTTCSSSC
T ss_pred -----------CCHHHHHHHHHHHHHhCCCEEEe---c---C-----CHHHHHHHHHHHHHcCCEE-EEecCCCcccccC
Confidence 12566788888888888875431 1 1 1367777888888888853 333331 2 24
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCceeeeccccC--CCC-CCCCCCCCCccHHHHHH
Q psy12516 198 TPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSSIAGL--GGC-PYARGASGNVATEDLVY 271 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~--G~~-p~~~g~~Gn~~~e~~~~ 271 (327)
++.++.+++.. .-|.+.+.+ |.+.. |......+..+..=+.+|+..=.-. +.. ...+| .|..+...++.
T Consensus 143 ~~~~~~~ll~~---~~p~vg~~~D~~h~~~~-g~d~~~~l~~~~~~i~~vHl~D~~~~~~~~~~~~~G-~G~id~~~~~~ 217 (257)
T 3lmz_A 143 DATDVWVHTKD---LDPRIGMCLDVGHDLRN-GCDPVADLKKYHTRVFDMHIKDVTDSSKAGVGIEIG-RGKIDFPALIR 217 (257)
T ss_dssp SHHHHHHHHTT---SCTTEEEEEEHHHHHHT-TCCHHHHHHHHGGGEEEEEECEESCSSTTCCEECTT-SSSCCHHHHHH
T ss_pred CHHHHHHHHHh---CCCCccEEEchhhHHHc-CCCHHHHHHHhhcceeEEeecccccccCCCCccccC-CCccCHHHHHH
Confidence 66666666542 124322222 32221 2222333333222223333222111 110 11233 68999999999
Q ss_pred HHHhCCCC
Q psy12516 272 MLEGMGIE 279 (327)
Q Consensus 272 ~l~~~g~~ 279 (327)
.|++.||+
T Consensus 218 ~L~~~gy~ 225 (257)
T 3lmz_A 218 MMREVNYT 225 (257)
T ss_dssp HHHHTTCC
T ss_pred HHHHcCCC
Confidence 99997776
|
| >2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A | Back alignment and structure |
|---|
Probab=90.44 E-value=4.6 Score=36.24 Aligned_cols=116 Identities=14% Similarity=0.090 Sum_probs=67.0
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+...+.+. ...|.+|..+-++.+++.+. ....|.+. .+..
T Consensus 27 g~iD~~~l~~lv~-~li~~Gv~Gl~v~GtTGE~-----~~Ls~eEr~~v~~~~~~~~~-grvpViaG---------vg~~ 90 (303)
T 2wkj_A 27 QALDKASLRRLVQ-FNIQQGIDGLYVGGSTGEA-----FVQSLSEREQVLEIVAEEAK-GKIKLIAH---------VGCV 90 (303)
T ss_dssp SSBCHHHHHHHHH-HHHHTTCSEEEESSTTTTG-----GGSCHHHHHHHHHHHHHHHT-TTSEEEEE---------CCCS
T ss_pred CCcCHHHHHHHHH-HHHHcCCCEEEECeeccCh-----hhCCHHHHHHHHHHHHHHhC-CCCcEEEe---------cCCC
Confidence 6777766655443 3466788887776665552 23455554444444444432 23444321 1224
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.++..++++.+.+.|+|.+.+ +-..-..+++.+.+.++.+.+..+++||.+
T Consensus 91 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~~lPiil 143 (303)
T 2wkj_A 91 STAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVV 143 (303)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHhCCCCEEEecCCCCCCCCHHHHHHHHHHHHHhCCCCCEEE
Confidence 5677788888888888885544 333334567778888887777665345543
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=90.39 E-value=1.6 Score=39.04 Aligned_cols=81 Identities=17% Similarity=0.161 Sum_probs=68.4
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+..++ +++..-++..+..|.++|
T Consensus 19 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G 98 (294)
T 3b4u_A 19 GTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAG 98 (294)
T ss_dssp SSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 4889999999999988764 36776654 457777888888999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 99 adavlv 104 (294)
T 3b4u_A 99 ARNILL 104 (294)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 997654
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=90.36 E-value=3.9 Score=35.29 Aligned_cols=117 Identities=17% Similarity=0.170 Sum_probs=75.7
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHHHHHHHhcCCCeEEEee
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV---GTPGTMRLMLEDVLTVIPADRLAVHC 222 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~~~~~~~~~~~~l~~H~ 222 (327)
+..++.+...+. .|. +..+.+.-..-++.+.+.|+|.|-+.=-.|. -.-..+.+-+..+++..++.++-+=.
T Consensus 60 ~~~~v~v~tVig----FP~-G~~~~~~K~~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIi 134 (231)
T 3ndo_A 60 APSGLAIAAVAG----FPS-GKHVPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIV 134 (231)
T ss_dssp CCTTCEEEEEES----TTT-CCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred cCCCCeEEEEec----CCC-CCCcHHHHHHHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEE
Confidence 445777765544 343 3455565566677888899999988777776 45677888888888887654433211
Q ss_pred cC-------CcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 223 HD-------TYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 223 Hn-------~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
-. +.-.=...+..|.++|+|+|-+|-. .+. +|++.+|++-.+.+.
T Consensus 135 Et~~L~~~~t~eei~~a~~ia~~aGADfVKTSTG-f~~-------~~gAt~edv~lm~~~ 186 (231)
T 3ndo_A 135 ESAALLEFSGEPLLADVCRVARDAGADFVKTSTG-FHP-------SGGASVQAVEIMART 186 (231)
T ss_dssp CHHHHHHHTCHHHHHHHHHHHHHTTCSEEECCCS-CCT-------TCSCCHHHHHHHHHH
T ss_pred ECcccCCCCCHHHHHHHHHHHHHHCcCEEEcCCC-CCC-------CCCCCHHHHHHHHHH
Confidence 11 1112234556788999999988753 331 367888888766664
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.29 E-value=3.2 Score=37.02 Aligned_cols=83 Identities=16% Similarity=0.030 Sum_probs=68.9
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHh
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEF 239 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~ 239 (327)
++..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+..++= |+..-++..+..|.++
T Consensus 15 dg~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~ 94 (294)
T 2ehh_A 15 EGEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEV 94 (294)
T ss_dssp TTEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHT
T ss_pred CCCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999 5888888899998888764 467777654 5677788888899999
Q ss_pred cCceeeec
Q psy12516 240 GISVFDSS 247 (327)
Q Consensus 240 G~~~vd~s 247 (327)
|++.+=..
T Consensus 95 Gadavlv~ 102 (294)
T 2ehh_A 95 GADGALVV 102 (294)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEC
Confidence 99976543
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=90.26 E-value=5.2 Score=34.51 Aligned_cols=149 Identities=16% Similarity=0.100 Sum_probs=91.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.+.|++.|.+.-+ +|.. .+.++.+++.+|+..+|.-+- +.......|+++|++.+-+ .
T Consensus 50 ~~a~al~~gGi~~iEvt~~----t~~a-~e~I~~l~~~~~~~~iGaGTV----lt~~~a~~Ai~AGA~fIvs--P----- 113 (232)
T 4e38_A 50 PLGKVLAENGLPAAEITFR----SDAA-VEAIRLLRQAQPEMLIGAGTI----LNGEQALAAKEAGATFVVS--P----- 113 (232)
T ss_dssp HHHHHHHHTTCCEEEEETT----STTH-HHHHHHHHHHCTTCEEEEECC----CSHHHHHHHHHHTCSEEEC--S-----
T ss_pred HHHHHHHHCCCCEEEEeCC----CCCH-HHHHHHHHHhCCCCEEeECCc----CCHHHHHHHHHcCCCEEEe--C-----
Confidence 5678888999998888544 3333 456777778787666665432 2245566667777777641 0
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVG 161 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g 161 (327)
+.+ .++++++++.|+.+..
T Consensus 114 --------~~~----------------------------------------------~~vi~~~~~~gi~~ip------- 132 (232)
T 4e38_A 114 --------GFN----------------------------------------------PNTVRACQEIGIDIVP------- 132 (232)
T ss_dssp --------SCC----------------------------------------------HHHHHHHHHHTCEEEC-------
T ss_pred --------CCC----------------------------------------------HHHHHHHHHcCCCEEc-------
Confidence 011 1235566777876531
Q ss_pred CCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcC
Q psy12516 162 CPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 162 ~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~ 241 (327)
+-.+++++. ++.++|+|.|.+--+ +... =.++++.++.-+|++++-. +-|....|.-..+++|+
T Consensus 133 ----Gv~TptEi~----~A~~~Gad~vK~FPa-~~~g---G~~~lkal~~p~p~ip~~p----tGGI~~~n~~~~l~aGa 196 (232)
T 4e38_A 133 ----GVNNPSTVE----AALEMGLTTLKFFPA-EASG---GISMVKSLVGPYGDIRLMP----TGGITPSNIDNYLAIPQ 196 (232)
T ss_dssp ----EECSHHHHH----HHHHTTCCEEEECST-TTTT---HHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHTSTT
T ss_pred ----CCCCHHHHH----HHHHcCCCEEEECcC-cccc---CHHHHHHHHHHhcCCCeee----EcCCCHHHHHHHHHCCC
Confidence 123555544 356789998776322 1110 0267888888777776654 45666788889999987
Q ss_pred ce
Q psy12516 242 SV 243 (327)
Q Consensus 242 ~~ 243 (327)
..
T Consensus 197 ~~ 198 (232)
T 4e38_A 197 VL 198 (232)
T ss_dssp BC
T ss_pred eE
Confidence 53
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=90.21 E-value=1.6 Score=39.26 Aligned_cols=81 Identities=11% Similarity=0.105 Sum_probs=69.4
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
++.|.+.+.++++.+.+.|++.|.++-|+| .++.++-.++++.+.+..+ .+|+-.++ +|+..-++..+..|.++|
T Consensus 20 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G 99 (300)
T 3eb2_A 20 GRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLG 99 (300)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcC
Confidence 579999999999999999999999999999 4889998999998888764 36777665 578888899999999999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 100 adavlv 105 (300)
T 3eb2_A 100 ADGILA 105 (300)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998754
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=90.20 E-value=1.2 Score=39.16 Aligned_cols=90 Identities=12% Similarity=0.087 Sum_probs=50.6
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec---CCCCccC--HHHHHHHHHHHHHh
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG---DTIGVGT--PGTMRLMLEDVLTV 212 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~---Dt~G~~~--P~~~~~~~~~~~~~ 212 (327)
..++.+.+++.|+.... +. .| .++.+.+.+ +.+.+..-||+. .++|... +.++.++++.+|+.
T Consensus 130 ~~~~~~~~~~~Gl~~I~-lv----aP---~t~~eRi~~----ia~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~ 197 (252)
T 3tha_A 130 SDDLIKECERYNIALIT-LV----SV---TTPKERVKK----LVKHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSF 197 (252)
T ss_dssp CHHHHHHHHHTTCEECE-EE----ET---TSCHHHHHH----HHTTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcCCeEEE-Ee----CC---CCcHHHHHH----HHHhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHh
Confidence 55667788888987532 22 12 234444443 333433334444 4566644 34678899999987
Q ss_pred cCCCeEEEeecCCcCcHHHHHHHHHHhcCcee
Q psy12516 213 IPADRLAVHCHDTYGQALANILTAMEFGISVF 244 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~v 244 (327)
. +.|+.+ -+|.........+..++|.|
T Consensus 198 ~-~~Pv~v----GfGIst~e~a~~~~~~ADGV 224 (252)
T 3tha_A 198 T-NLPIFV----GFGIQNNQDVKRMRKVADGV 224 (252)
T ss_dssp C-CSCEEE----ESSCCSHHHHHHHTTTSSEE
T ss_pred c-CCcEEE----EcCcCCHHHHHHHHhcCCEE
Confidence 5 356655 22555555555565555543
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=90.20 E-value=3.2 Score=36.43 Aligned_cols=128 Identities=13% Similarity=0.112 Sum_probs=77.1
Q ss_pred hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 104 SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 104 ~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
+++.|.+.+.+..... ..+.++.++.+.++.+.+++.|+.+-.. ++.-|.......+++.+.+.++...+.
T Consensus 101 Ai~~Ga~~v~~~~nig--------~~~~~~~~~~~~~v~~~~~~~~~~vIi~-~~~~G~~~~~~~s~~~i~~a~~~a~~~ 171 (263)
T 1w8s_A 101 AVSLGASAVGYTIYPG--------SGFEWKMFEELARIKRDAVKFDLPLVVE-SFPRGGKVVNETAPEIVAYAARIALEL 171 (263)
T ss_dssp HHHTTCSEEEEEECTT--------STTHHHHHHHHHHHHHHHHHHTCCEEEE-ECCCSTTCCCTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCCEEEEEEecC--------CcCHHHHHHHHHHHHHHHHHcCCeEEEE-eeCCCCccccCCCHHHHHHHHHHHHHc
Confidence 4556777665432111 1223455778888888999899986432 222111111112678888888999999
Q ss_pred CcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEee--c-CCcCcHHHHHHHHHHhcCceeeec
Q psy12516 184 GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHC--H-DTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 184 g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~--H-n~~g~a~an~l~a~~~G~~~vd~s 247 (327)
|+|-|... +.| +|+.++++ ++..+.+|+..=. + ++.-.+..|.-.++++|++.+-..
T Consensus 172 GAD~vkt~-~~~--~~e~~~~~----~~~~~~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsvg 231 (263)
T 1w8s_A 172 GADAMKIK-YTG--DPKTFSWA----VKVAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVG 231 (263)
T ss_dssp TCSEEEEE-CCS--SHHHHHHH----HHHTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEc-CCC--CHHHHHHH----HHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEe
Confidence 99998887 433 55555444 4443332433322 1 256677889999999999855443
|
| >3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* | Back alignment and structure |
|---|
Probab=90.18 E-value=2 Score=38.29 Aligned_cols=82 Identities=13% Similarity=0.040 Sum_probs=68.1
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
++ .|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+-.++ +|+..-++..+..|.++
T Consensus 17 dg-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~ 95 (291)
T 3a5f_A 17 TG-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESI 95 (291)
T ss_dssp SS-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHT
T ss_pred CC-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhc
Confidence 35 9999999999999999999999999999 5888888899998887764 36777655 45777788888899999
Q ss_pred cCceeeec
Q psy12516 240 GISVFDSS 247 (327)
Q Consensus 240 G~~~vd~s 247 (327)
|++.+=..
T Consensus 96 Gadavlv~ 103 (291)
T 3a5f_A 96 GVDGLLVI 103 (291)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEc
Confidence 99976543
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=90.18 E-value=9.2 Score=34.42 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=64.8
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+...+.+. ...+.+|..+-++.+++.+.. ...|.+. .+..
T Consensus 39 g~iD~~~l~~lv~-~li~~Gv~Gl~v~GtTGE~-----~~Ls~~Er~~v~~~~v~~~~g-rvpViaG---------vg~~ 102 (314)
T 3qze_A 39 GRLDWDSLAKLVD-FHLQEGTNAIVAVGTTGES-----ATLDVEEHIQVIRRVVDQVKG-RIPVIAG---------TGAN 102 (314)
T ss_dssp SCBCHHHHHHHHH-HHHHHTCCEEEESSGGGTG-----GGCCHHHHHHHHHHHHHHHTT-SSCEEEE---------CCCS
T ss_pred CCcCHHHHHHHHH-HHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CCcEEEe---------CCCc
Confidence 5677666554433 3466788877766666552 234555544444444444432 2333221 1224
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec-CCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.++..++++.+.+.|+|.+.+. -..-..+++.+.+.++.+.+..+ +||.+
T Consensus 103 st~eai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiil 154 (314)
T 3qze_A 103 STREAVALTEAAKSGGADACLLVTPYYNKPTQEGMYQHFRHIAEAVA-IPQIL 154 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSC-SCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 56677777777888888754443 33444566777777777776653 45444
|
| >3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0 | Back alignment and structure |
|---|
Probab=90.05 E-value=5.8 Score=36.26 Aligned_cols=191 Identities=14% Similarity=0.145 Sum_probs=108.2
Q ss_pred hcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCC------------ccCCCcHHHHHHHhhh---
Q psy12516 39 VIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARG------------ASGNVATEDLVYMLEG--- 102 (327)
Q Consensus 39 ~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~------------~~gn~~~e~v~~~l~~--- 102 (327)
.+| +++.|.|=+-.+....+.+-. +.|+..-..++..+.. .|... ..--...+++......
T Consensus 12 ~lP--K~ELH~Hl~Gsl~p~tl~~la~~~~~~lp~~~~~~l~~-~~~~~~l~~fl~~f~~~~~vl~~~e~~~~~~~~~l~ 88 (343)
T 3rys_A 12 APP--VAELHLHIEGTLQPELIFALAERNGIELPYEDIEELRE-KYEFTDLQSFLDLYYANMAVLQTEQDFTDMTRAYLE 88 (343)
T ss_dssp CCC--EEECSBBGGGGCCHHHHHHHHHHTTCCCSCSSHHHHHT-TCCCSSHHHHHHHHHHHGGGCCSHHHHHHHHHHHHH
T ss_pred cCC--ceeeEecCccCCCHHHHHHHHHhcCCCCCCCCHHHHHH-hcCCCCHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345 688899988888777776654 5676532111111111 00000 0001123333322222
Q ss_pred hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHH-HcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 103 KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTAL-TNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~-~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
...+.|+..+.++.. + +....-+.+.+++++.+.+.++.++ +.|+.+...++.. -..+++...+..+.+.
T Consensus 89 ~~~~dgV~y~Eir~~--P-~~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~------R~~~~~~a~~~l~~a~ 159 (343)
T 3rys_A 89 RAAAGGVRHAEIMMD--P-QAHTSRGVALETCVNGVANALATSEEDFGVSTLLIAAFL------RDMSEDSALEVLDQLL 159 (343)
T ss_dssp HHHHTTEEEEEEEEC--H-HHHHTTTCCHHHHHHHHHHHHTTHHHHHSCEEEEEEEEE------TTSCHHHHHHHHHHHH
T ss_pred HHHHCCCEEEEEEec--H-HHhccCCCCHHHHHHHHHHHHHHHhhcCceeEEEEEEeC------CCCCHHHHHHHHHHHH
Confidence 233456655544321 1 2222346788888888888887654 5688887655542 1356677777777776
Q ss_pred HcC--cCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCceee
Q psy12516 182 KMG--CYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFD 245 (327)
Q Consensus 182 ~~g--~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~vd 245 (327)
+++ +-.+-|+-.-....|....+.+...++. +.++.+|+....+ ..+...|+. .|+++|+
T Consensus 160 ~~~~~vvG~dL~g~E~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~--~~~i~~al~~lg~~rIg 222 (343)
T 3rys_A 160 AMHAPIAGIGLDSAEVGNPPSKFERLYQRAAEA--GLRRIAHAGEEGP--ASYITEALDVLHVERID 222 (343)
T ss_dssp HTTCCCCEEEEESCCTTCCGGGGHHHHHHHHHT--TCEEEEEESSSSC--HHHHHHHHHTSCCSEEE
T ss_pred hCCCCEEEEecCCcccCCCHHHHHHHHHHHHHC--CCeEEEeeCCCCC--HHHHHHHHhcCCcceee
Confidence 652 3445444322345677777777776653 5688889887754 456778887 8999875
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=90.02 E-value=2.4 Score=37.81 Aligned_cols=77 Identities=12% Similarity=0.081 Sum_probs=54.8
Q ss_pred ChHHHHHHHHHHHH-cCcCEEEe--c--------CCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 169 PPHNVTRVATALYK-MGCYEISL--G--------DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 169 ~~e~l~~~~~~~~~-~g~~~i~l--~--------Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
+++.+.+.++.+.+ .|+|.|.| . |..| ..|..+.++++.+++.+. .|+.+..--+..-...-+..+.
T Consensus 109 ~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g-~~~~~~~eii~~v~~~~~-~pv~vk~~~~~~~~~~~a~~l~ 186 (311)
T 1ep3_A 109 EEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFG-TDPEVAAALVKACKAVSK-VPLYVKLSPNVTDIVPIAKAVE 186 (311)
T ss_dssp SHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGG-GCHHHHHHHHHHHHHHCS-SCEEEEECSCSSCSHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhc-CCHHHHHHHHHHHHHhcC-CCEEEEECCChHHHHHHHHHHH
Confidence 57888999998888 89997755 1 2222 268888999999998874 5787765533322233356677
Q ss_pred HhcCceeeec
Q psy12516 238 EFGISVFDSS 247 (327)
Q Consensus 238 ~~G~~~vd~s 247 (327)
++|++.|..+
T Consensus 187 ~~G~d~i~v~ 196 (311)
T 1ep3_A 187 AAGADGLTMI 196 (311)
T ss_dssp HTTCSEEEEC
T ss_pred HcCCCEEEEe
Confidence 8999999874
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.89 E-value=8.5 Score=33.00 Aligned_cols=190 Identities=12% Similarity=-0.010 Sum_probs=101.8
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 101 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~ 101 (327)
...++.+++.+++..++.-. ..+.++ -..+..+...+ .| -.+-+.++ + ..|..+++.-+.-.+
T Consensus 12 p~~t~~~i~~l~~~A~~~~~-~aVcv~-----p~~v~~a~~~l-~g-v~v~tvig-F--------P~G~~~~~~k~~E~~ 74 (226)
T 1vcv_A 12 PYLTVDEAVAGARKAEELGV-AAYCVN-----PIYAPVVRPLL-RK-VKLCVVAD-F--------PFGALPTASRIALVS 74 (226)
T ss_dssp TTCCHHHHHHHHHHHHHHTC-SEEEEC-----GGGHHHHGGGC-SS-SEEEEEES-T--------TTCCSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CEEEEC-----HHHHHHHHHHh-CC-CeEEEEeC-C--------CCCCCchHHHHHHHH
Confidence 44578888888888777432 122221 11122222222 24 23333332 1 124456664443333
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
. ++.|.|.+.+........ ....++..+.+..+.+.+++.+++| .+... ..+++.+...++...
T Consensus 75 -~-i~~GAdEID~Vinig~~~-----~g~~~~v~~ei~~v~~a~~~~~lKv--IlEt~-------~Lt~eei~~a~~ia~ 138 (226)
T 1vcv_A 75 -R-LAEVADEIDVVAPIGLVK-----SRRWAEVRRDLISVVGAAGGRVVKV--ITEEP-------YLRDEERYTLYDIIA 138 (226)
T ss_dssp -H-HTTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTTTSEEEE--ECCGG-------GCCHHHHHHHHHHHH
T ss_pred -H-HHCCCCEEEEecchhhhc-----CCCHHHHHHHHHHHHHHHcCCCceE--EEecc-------CCCHHHHHHHHHHHH
Confidence 3 788888776654443221 1233445666777777765444443 33332 246888999999999
Q ss_pred HcCcCEEEec--CC----------CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh---cCc----
Q psy12516 182 KMGCYEISLG--DT----------IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF---GIS---- 242 (327)
Q Consensus 182 ~~g~~~i~l~--Dt----------~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~---G~~---- 242 (327)
++|+|-|--. =+ .|-.+|+++.-+-+.++. .+. .+.+-.---... ...++.-+++ |++
T Consensus 139 eaGADfVKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~-~g~-~v~vKaaGGirt-~~~al~~i~a~~~Ga~~~~f 215 (226)
T 1vcv_A 139 EAGAHFIKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKE-KGY-RLGVKMAGGIRT-REQAKAIVDAIGWGEDPARV 215 (226)
T ss_dssp HHTCSEEECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHH-HTC-CCEEEEESSCCS-HHHHHHHHHHHCSCSCTTTE
T ss_pred HcCCCEEEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHH-hCC-CceEEEeCCCCC-HHHHHHHHHHHHCCCCcCCc
Confidence 9999987654 22 356788888655444443 332 233332211111 4555666666 999
Q ss_pred eeeec
Q psy12516 243 VFDSS 247 (327)
Q Consensus 243 ~vd~s 247 (327)
++=+|
T Consensus 216 RiGtS 220 (226)
T 1vcv_A 216 RLGTS 220 (226)
T ss_dssp EEEES
T ss_pred eEecC
Confidence 77554
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=89.84 E-value=3 Score=37.16 Aligned_cols=79 Identities=19% Similarity=0.139 Sum_probs=66.1
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l~a~~~G~ 241 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+...+ +-. -.+|+..-++..+..|.++|+
T Consensus 15 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g--ViaGvg~~~t~~ai~la~~A~~~Ga 92 (288)
T 2nuw_A 15 GKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK--LIFQVGSLNLNDVMELVKFSNEMDI 92 (288)
T ss_dssp SCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC--EEEECCCSCHHHHHHHHHHHHTSCC
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--eEEeeCCCCHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999 48899988999988887765 444 345677778888888999999
Q ss_pred ceeee
Q psy12516 242 SVFDS 246 (327)
Q Consensus 242 ~~vd~ 246 (327)
|.+=.
T Consensus 93 davlv 97 (288)
T 2nuw_A 93 LGVSS 97 (288)
T ss_dssp SEEEE
T ss_pred CEEEE
Confidence 87654
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=89.75 E-value=4.5 Score=36.26 Aligned_cols=66 Identities=14% Similarity=0.217 Sum_probs=44.7
Q ss_pred HHHHHHHHcCcCEEEecCCc------cccCHHHHHHHH---HHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKMGCYEISLGDTI------GVGTPGTMRLML---EDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~------G~~~p~~~~~~~---~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
+.++++.+.|+|.|-+.=.+ .....+++++++ +.+++.+ ++++.+.+.+- .-+.+|+++|++.|.
T Consensus 67 ~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSIDT~~~-----~V~~aAl~aGa~iIN 140 (297)
T 1tx2_A 67 RHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISIDTYKA-----EVAKQAIEAGAHIIN 140 (297)
T ss_dssp HHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEECSCH-----HHHHHHHHHTCCEEE
T ss_pred HHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEeCCCH-----HHHHHHHHcCCCEEE
Confidence 56788999999999887322 223345566555 4555544 47888876543 455778889999995
Q ss_pred e
Q psy12516 73 S 73 (327)
Q Consensus 73 ~ 73 (327)
.
T Consensus 141 d 141 (297)
T 1tx2_A 141 D 141 (297)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=89.71 E-value=5 Score=36.51 Aligned_cols=117 Identities=17% Similarity=0.263 Sum_probs=73.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC----------C----C--CC----CCCh-------HHHHHHHHHHHHc
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGC----------P----Y--EG----AVPP-------HNVTRVATALYKM 183 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~----------~----~--~~----r~~~-------e~l~~~~~~~~~~ 183 (327)
.++.++..+++++..++.|-++.+.|... |. | . .. ..+. +.+.+.++.+.++
T Consensus 78 ~d~~~~~~~~~~~~vh~~g~~i~~QL~h~-Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~a 156 (338)
T 1z41_A 78 SDEHIEGFAKLTEQVKEQGSKIGIQLAHA-GRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEA 156 (338)
T ss_dssp STHHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEecCC-CcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 34557888999999999999877776542 10 0 0 00 0112 4566677788889
Q ss_pred CcCEEEecCC-------------------CCcc---CHHHHHHHHHHHHHhcCCCeEEEeecCC----cCc----HHHHH
Q psy12516 184 GCYEISLGDT-------------------IGVG---TPGTMRLMLEDVLTVIPADRLAVHCHDT----YGQ----ALANI 233 (327)
Q Consensus 184 g~~~i~l~Dt-------------------~G~~---~P~~~~~~~~~~~~~~~~~~l~~H~Hn~----~g~----a~an~ 233 (327)
|.|.|.|--. .|.. .++.+.++++.+++.+ +.+|.+-.--+ .|+ +..-+
T Consensus 157 GfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~~g~~~~~~~~~a 235 (338)
T 1z41_A 157 GFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTDKGLDIADHIGFA 235 (338)
T ss_dssp TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCSTTSCCHHHHHHHH
T ss_pred CCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCCCCCCHHHHHHHH
Confidence 9998776422 2322 2456788999999988 56777764321 133 23334
Q ss_pred HHHHHhcCceeeeccc
Q psy12516 234 LTAMEFGISVFDSSIA 249 (327)
Q Consensus 234 l~a~~~G~~~vd~s~~ 249 (327)
....++|+++|+.+-.
T Consensus 236 ~~l~~~Gvd~i~v~~~ 251 (338)
T 1z41_A 236 KWMKEQGVDLIDCSSG 251 (338)
T ss_dssp HHHHHTTCCEEEEECC
T ss_pred HHHHHcCCCEEEEecC
Confidence 4455789999998754
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=89.61 E-value=8.9 Score=34.37 Aligned_cols=113 Identities=15% Similarity=0.033 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCh-HHHHHHHHHHHHcCcCEEEecCC-CCccCHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPP-HNVTRVATALYKMGCYEISLGDT-IGVGTPGTMRLMLEDV 209 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~-e~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~~~~~~~~~ 209 (327)
.+.++.+.++++.|++.|+.+.+.+ +..+.......++ +.+.+.++.+.++|+|.|.+.=+ .|...++.+.++++..
T Consensus 138 ~~~~~~i~~v~~~~~~~G~p~lv~~-~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~ 216 (304)
T 1to3_A 138 QQRLNMVKEFNELCHSNGLLSIIEP-VVRPPRCGDKFDREQAIIDAAKELGDSGADLYKVEMPLYGKGARSDLLTASQRL 216 (304)
T ss_dssp HHHHHHHHHHHHHHHTTTCEEEEEE-EECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEE-ECCCCccccCCChhHHHHHHHHHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHhc
Confidence 4457889999999999999875442 2222111122355 77888899999999999877653 2333778888877765
Q ss_pred HHhcCCCe-EEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 210 LTVIPADR-LAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 210 ~~~~~~~~-l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
....+ .| +.+=.=.+.-.-..+.-.++++|++.|-+
T Consensus 217 ~~~~~-~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~v 253 (304)
T 1to3_A 217 NGHIN-MPWVILSSGVDEKLFPRAVRVAMEAGASGFLA 253 (304)
T ss_dssp HHTCC-SCEEECCTTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred cccCC-CCeEEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence 54333 34 43322123334456778888999976654
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=89.59 E-value=6.5 Score=33.56 Aligned_cols=113 Identities=12% Similarity=0.148 Sum_probs=72.2
Q ss_pred HcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCC--CeEEE-
Q psy12516 147 TNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPA--DRLAV- 220 (327)
Q Consensus 147 ~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~--~~l~~- 220 (327)
..++++...+. .|.. ..+.+....-++.+.+.|+|.|-+.=-.|.+ .-..+.+-+..+++..+. +++-+
T Consensus 52 ~~~v~v~~vig----FP~G-~~~~~~k~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIle 126 (220)
T 1ub3_A 52 HAPFRLVTVVG----FPLG-YQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILE 126 (220)
T ss_dssp TCSSEEEEEES----TTTC-CSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECC
T ss_pred CCCceEEEEec----CCCC-CCchHHHHHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEe
Confidence 44666655433 3433 3566666666788889999998887677754 567788888888887643 23222
Q ss_pred -eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 221 -HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 221 -H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
-..++ -.=.-.+..|+++|+|+|-+|-. .+ +|++..|++-.+.+
T Consensus 127 t~~l~~-e~i~~a~~ia~eaGADfVKTsTG-f~--------~~gat~~dv~~m~~ 171 (220)
T 1ub3_A 127 TGYFSP-EEIARLAEAAIRGGADFLKTSTG-FG--------PRGASLEDVALLVR 171 (220)
T ss_dssp GGGSCH-HHHHHHHHHHHHHTCSEEECCCS-SS--------SCCCCHHHHHHHHH
T ss_pred cCCCCH-HHHHHHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHH
Confidence 11121 12234566788999999998752 22 36788887766655
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=89.58 E-value=3.4 Score=37.17 Aligned_cols=83 Identities=12% Similarity=0.128 Sum_probs=68.7
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
++..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+||-.++ .|+..-++..+..|.++
T Consensus 27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~ 106 (306)
T 1o5k_A 27 NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKL 106 (306)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhc
Confidence 4578999999999999999999999999999 5889888899998887764 46776655 45677778888889999
Q ss_pred cCceeeec
Q psy12516 240 GISVFDSS 247 (327)
Q Consensus 240 G~~~vd~s 247 (327)
|++.+=..
T Consensus 107 Gadavlv~ 114 (306)
T 1o5k_A 107 GANGVLVV 114 (306)
T ss_dssp TCSEEEEE
T ss_pred CCCEEEEC
Confidence 99986544
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=89.57 E-value=1.7 Score=38.81 Aligned_cols=81 Identities=14% Similarity=0.063 Sum_probs=67.6
Q ss_pred CCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHHHHHHhc
Q psy12516 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFG 240 (327)
Q Consensus 165 ~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l~a~~~G 240 (327)
++..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+...+ +-. -.+|+..-++..+..|.++|
T Consensus 13 dg~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g--vi~Gvg~~~t~~ai~la~~A~~~G 90 (286)
T 2r91_A 13 GGRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR--VIVQVASLNADEAIALAKYAESRG 90 (286)
T ss_dssp TTEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS--EEEECCCSSHHHHHHHHHHHHHTT
T ss_pred CCccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC--EEEeeCCCCHHHHHHHHHHHHhcC
Confidence 4578999999999999999999999999999 48899999999999988766 444 34567777888888999999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 91 adavlv~ 97 (286)
T 2r91_A 91 AEAVASL 97 (286)
T ss_dssp CSEEEEC
T ss_pred CCEEEEc
Confidence 9976543
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=89.49 E-value=5.5 Score=36.73 Aligned_cols=120 Identities=14% Similarity=0.155 Sum_probs=75.3
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC---------------CCC-------------------CCCCh-----
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGC---------------PYE-------------------GAVPP----- 170 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~---------------~~~-------------------~r~~~----- 170 (327)
..++.++..+++++.+++.|-++.+.|... |. |-. ....|
T Consensus 75 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~-Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~ 153 (364)
T 1vyr_A 75 HSPEQIAAWKKITAGVHAEDGRIAVQLWHT-GRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALEL 153 (364)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCG
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEeccC-CcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCH
Confidence 345557888999999999998877776531 10 000 00122
Q ss_pred -------HHHHHHHHHHHHcCcCEEEec-------------------CCCCccC---HHHHHHHHHHHHHhcCCCeEEEe
Q psy12516 171 -------HNVTRVATALYKMGCYEISLG-------------------DTIGVGT---PGTMRLMLEDVLTVIPADRLAVH 221 (327)
Q Consensus 171 -------e~l~~~~~~~~~~g~~~i~l~-------------------Dt~G~~~---P~~~~~~~~~~~~~~~~~~l~~H 221 (327)
+.+.+.++.+.++|.|.|.|- |..|-.. ++.+.++++.+|+.++..+|++-
T Consensus 154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vr 233 (364)
T 1vyr_A 154 DEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIR 233 (364)
T ss_dssp GGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEE
Confidence 466677777889999988872 3334322 34577889999999863277772
Q ss_pred e-----cCC---cCcHHH----HHHHHHHhcCceeeecccc
Q psy12516 222 C-----HDT---YGQALA----NILTAMEFGISVFDSSIAG 250 (327)
Q Consensus 222 ~-----Hn~---~g~a~a----n~l~a~~~G~~~vd~s~~G 250 (327)
. +++ .+.... -+....++|+++|+.+..+
T Consensus 234 ls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~ 274 (364)
T 1vyr_A 234 VSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETD 274 (364)
T ss_dssp ECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCB
T ss_pred EccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCc
Confidence 2 222 122333 3445567899999987643
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=89.37 E-value=3.3 Score=36.93 Aligned_cols=80 Identities=16% Similarity=0.116 Sum_probs=66.2
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l~a~~~G~ 241 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+++...+ +.. -.+|+..-++..+..|.++|+
T Consensus 15 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g--viaGvg~~~t~~ai~la~~A~~~Ga 92 (293)
T 1w3i_A 15 NRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK--IIFQVGGLNLDDAIRLAKLSKDFDI 92 (293)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC--EEEECCCSCHHHHHHHHHHGGGSCC
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC--EEEecCCCCHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999 48899989999999987765 434 345677777888888888999
Q ss_pred ceeeec
Q psy12516 242 SVFDSS 247 (327)
Q Consensus 242 ~~vd~s 247 (327)
+.+=..
T Consensus 93 davlv~ 98 (293)
T 1w3i_A 93 VGIASY 98 (293)
T ss_dssp SEEEEE
T ss_pred CEEEEc
Confidence 876543
|
| >2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} | Back alignment and structure |
|---|
Probab=89.35 E-value=3.2 Score=37.14 Aligned_cols=99 Identities=14% Similarity=0.057 Sum_probs=76.1
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+..++ .|+..-++..+..|.++|
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G 95 (297)
T 2rfg_A 16 GQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAG 95 (297)
T ss_dssp TEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcC
Confidence 578999999999999999999999999999 5889998899998887764 36666654 456777888888999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
++.+=..- |+... ++-++++..++
T Consensus 96 adavlv~~------P~y~~----~s~~~l~~~f~ 119 (297)
T 2rfg_A 96 ADAVLCVA------GYYNR----PSQEGLYQHFK 119 (297)
T ss_dssp CSEEEECC------CTTTC----CCHHHHHHHHH
T ss_pred CCEEEEcC------CCCCC----CCHHHHHHHHH
Confidence 99765432 33221 34566666554
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=89.27 E-value=3 Score=37.21 Aligned_cols=100 Identities=14% Similarity=0.068 Sum_probs=75.6
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+-.++ +|+..-++..+..|.++|
T Consensus 17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G 96 (292)
T 2ojp_A 17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG 96 (292)
T ss_dssp SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSS
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcC
Confidence 579999999999999999999999999999 5889988899998887764 36777655 456667777788888889
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+=..- |+... ++-++++..++.
T Consensus 97 adavlv~~------P~y~~----~s~~~l~~~f~~ 121 (292)
T 2ojp_A 97 IVGCLTVT------PYYNR----PSQEGLYQHFKA 121 (292)
T ss_dssp CSEEEEEC------CCSSC----CCHHHHHHHHHH
T ss_pred CCEEEECC------CCCCC----CCHHHHHHHHHH
Confidence 98764432 32211 345666666553
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=89.21 E-value=10 Score=33.70 Aligned_cols=68 Identities=15% Similarity=0.136 Sum_probs=46.3
Q ss_pred HHHHHHcCcCEEEecCC-c----------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccch---HHHHHHHHHHcCCc
Q psy12516 4 ASALYKMGCYEISLGDT-I----------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ---ALANILTAMEFGIS 69 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt-~----------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~---~~~~~~~a~~aG~~ 69 (327)
++.+.++|.|.|.+.|. . |..+..++...++.+.+..+ .|+..-.=.-+|. ...|+...+++|+.
T Consensus 34 A~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~-~PviaD~d~Gyg~~~~~~~~v~~l~~aGa~ 112 (287)
T 3b8i_A 34 ARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVAR-LPVIADADHGYGNALNVMRTVVELERAGIA 112 (287)
T ss_dssp HHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTCS-SCEEEECTTCSSSHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcCC-CCEEEECCCCCCCHHHHHHHHHHHHHhCCe
Confidence 56677889999999987 2 55677778888888887765 5555555544552 23445555578888
Q ss_pred EEE
Q psy12516 70 VFD 72 (327)
Q Consensus 70 ~id 72 (327)
-+.
T Consensus 113 gv~ 115 (287)
T 3b8i_A 113 ALT 115 (287)
T ss_dssp EEE
T ss_pred EEE
Confidence 755
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=89.14 E-value=4.3 Score=35.54 Aligned_cols=79 Identities=13% Similarity=0.024 Sum_probs=49.7
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCC-------------------ccCHHHHHHHHHHHHHhcCCCeEEEeecCC--c
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIG-------------------VGTPGTMRLMLEDVLTVIPADRLAVHCHDT--Y 226 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-------------------~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~--~ 226 (327)
.+.+...++++.+.+.|+|.|.+.=-.. -.+..++.++++.+|+..|++|+.+-.-.+ +
T Consensus 28 p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~ 107 (262)
T 2ekc_A 28 PDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTYYNPIF 107 (262)
T ss_dssp SCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECCHHHHH
T ss_pred CChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEecCcHHH
Confidence 4667889999999999999877732221 134456668899999988678887731111 1
Q ss_pred CcHHHH-HHHHHHhcCceeee
Q psy12516 227 GQALAN-ILTAMEFGISVFDS 246 (327)
Q Consensus 227 g~a~an-~l~a~~~G~~~vd~ 246 (327)
..++.+ .-.+.++|++.+-.
T Consensus 108 ~~g~~~f~~~~~~aG~dgvii 128 (262)
T 2ekc_A 108 RIGLEKFCRLSREKGIDGFIV 128 (262)
T ss_dssp HHCHHHHHHHHHHTTCCEEEC
T ss_pred HhhHHHHHHHHHHcCCCEEEE
Confidence 111112 23366889886443
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=88.83 E-value=8.2 Score=35.16 Aligned_cols=122 Identities=15% Similarity=0.173 Sum_probs=78.2
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC----------C----CC--C----CCChH-------HHHHHHHHH
Q psy12516 128 NCTIEESLERFSEVVSTALTNGIRVRGYISCVVGC----------P----YE--G----AVPPH-------NVTRVATAL 180 (327)
Q Consensus 128 ~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~----------~----~~--~----r~~~e-------~l~~~~~~~ 180 (327)
+...++.++..+++++.+|+.|-++...|... |. | .. . ..+.+ .+.+.++.+
T Consensus 75 ~i~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~-Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a 153 (340)
T 3gr7_A 75 GIWSDDHIAGLRELVGLVKEHGAAIGIQLAHA-GRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRA 153 (340)
T ss_dssp ECSSTTHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCeEEEEeccC-CCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHH
Confidence 44445668999999999999999987777541 10 0 00 0 12333 344555666
Q ss_pred HHcCcCEEEec-------------------CCCCcc---CHHHHHHHHHHHHHhcCCCeEEEeecCC--------cCcHH
Q psy12516 181 YKMGCYEISLG-------------------DTIGVG---TPGTMRLMLEDVLTVIPADRLAVHCHDT--------YGQAL 230 (327)
Q Consensus 181 ~~~g~~~i~l~-------------------Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~~H~Hn~--------~g~a~ 230 (327)
.++|.|.|.|- |..|-. .++.+.++++.+|+.+ +.+|++-..-+ ..-.+
T Consensus 154 ~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~~g~~~~~~~ 232 (340)
T 3gr7_A 154 KEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHPDGLTAKDYV 232 (340)
T ss_dssp HHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCSTTSCCGGGHH
T ss_pred HHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccCCCCCHHHHH
Confidence 77899977763 333432 2345688899999988 56777766532 23344
Q ss_pred HHHHHHHHhcCceeeeccccC
Q psy12516 231 ANILTAMEFGISVFDSSIAGL 251 (327)
Q Consensus 231 an~l~a~~~G~~~vd~s~~G~ 251 (327)
.-+....++|+++|+.+-.+.
T Consensus 233 ~la~~L~~~Gvd~i~vs~g~~ 253 (340)
T 3gr7_A 233 PYAKRMKEQGVDLVDVSSGAI 253 (340)
T ss_dssp HHHHHHHHTTCCEEEEECCCS
T ss_pred HHHHHHHHcCCCEEEEecCCc
Confidence 555556678999999986543
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.79 E-value=5.6 Score=33.73 Aligned_cols=42 Identities=14% Similarity=0.162 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhcC----CCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 202 MRLMLEDVLTVIP----ADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 202 ~~~~~~~~~~~~~----~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
..+.++.+++..+ +.++.+ +.|....|.-.++++|++.|.++
T Consensus 162 ~~~~i~~l~~~~~~~~~~~pi~v----~GGI~~~n~~~~~~aGad~vvvg 207 (230)
T 1rpx_A 162 QVKKISDLRKICAERGLNPWIEV----DGGVGPKNAYKVIEAGANALVAG 207 (230)
T ss_dssp HHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTHHHHHHHTCCEEEES
T ss_pred HHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEEEEC
Confidence 3444566665442 445544 44666678888889999998875
|
| >1lt8_A Betaine-homocysteine methyltransferase; homocysteine metabolism, homocysteinemia, zinc, thiol alkyl transfer; HET: CBH CIT; 2.05A {Homo sapiens} SCOP: c.1.26.1 PDB: 1lt7_A* 1umy_A | Back alignment and structure |
|---|
Probab=88.78 E-value=3.6 Score=38.59 Aligned_cols=127 Identities=13% Similarity=0.044 Sum_probs=84.1
Q ss_pred cEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhh---hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH
Q psy12516 69 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGK---SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA 145 (327)
Q Consensus 69 ~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~---~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a 145 (327)
..|=.+++..|. -.++.+.+++......+ .++.|+|.+.+- ..++ +.+++.+++.+
T Consensus 116 ~~VAGsIGP~g~------~l~~~s~eel~~~~~eqi~~L~~~GvDlll~E-Ti~~--------------~~Eakaa~~a~ 174 (406)
T 1lt8_A 116 ALVAGGVSQTPS------YLSAKSETEVKKVFLQQLEVFMKKNVDFLIAE-YFEH--------------VEEAVWAVETL 174 (406)
T ss_dssp CEEEEEECCCHH------HHTTCHHHHHHHHHHHHHHHHHHHTCSEEEEC-CCSC--------------HHHHHHHHHHH
T ss_pred CEEEEEcCCccc------ccCCCCHHHHHHHHHHHHHHHhhCCCCEEEEc-ccCC--------------HHHHHHHHHHH
Confidence 467777777664 12567778887766543 357889987643 2222 45566667777
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhc----CCCeEEEe
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI----PADRLAVH 221 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~----~~~~l~~H 221 (327)
++.|+.+-+.++ + ..+++.+...+.+.+..+.+.+++.|.+--+ ..|+.+..+++.+++.. ...+|.++
T Consensus 175 ~~~~lPv~iS~T--~--~~~G~l~G~~~~~~~~~l~~~~~~avGvNC~---~gP~~~~~~l~~l~~~~~~~g~~~pl~vy 247 (406)
T 1lt8_A 175 IASGKPVAATMA--I--GPEGDLHGVPPGEAAVRLVKAGASIIGVNCH---FDPTISLKTVKLMKEGLEAAQLKAHLMSQ 247 (406)
T ss_dssp GGGTSCEEEEEC--C--BTTBCTTCCCHHHHHHHHHTTTCSEEEEESS---SCHHHHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred HHhCCcEEEEEE--E--CCCCCcCCCcHHHHHHHhhcCCCCEEEecCC---CCHHHHHHHHHHHHHhhhhcCCCccEEEe
Confidence 888887654433 2 2234466777888888888888888776553 34999999999998754 13577765
Q ss_pred ec
Q psy12516 222 CH 223 (327)
Q Consensus 222 ~H 223 (327)
.-
T Consensus 248 PN 249 (406)
T 1lt8_A 248 PL 249 (406)
T ss_dssp CC
T ss_pred cC
Confidence 53
|
| >3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum} | Back alignment and structure |
|---|
Probab=88.74 E-value=12 Score=33.03 Aligned_cols=226 Identities=9% Similarity=0.055 Sum_probs=109.8
Q ss_pred CeeEEEec---CccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhh
Q psy12516 43 DRLAVHCH---DTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASA 118 (327)
Q Consensus 43 ~~~~~H~h---~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~ 118 (327)
.++|++.- +.+-.....++..+ ++|.+.||........ +-+ ....++-+..+++...+.|+....+....
T Consensus 20 ~~lgi~~~~~~~~~~~~~~~~~~~a~~~G~~~vEl~~~~~~~--~~~----~~~~~~~~~~~~~~l~~~Gl~i~~~~~~~ 93 (316)
T 3qxb_A 20 MKLGVNLCFAVKRWLEPDRLAGLVRDDLGLEYVQYTYDLTDP--WWP----DIERDRRAIAYAKAFRKAGLTIESTFGGL 93 (316)
T ss_dssp CCEEEEGGGGTTTSCSHHHHHHHHHHTSCCCEEEEETTTSCT--TSC----HHHHHHHHHHHHHHHHHTTCEEEEEECCH
T ss_pred ccceecchHHHhccCCHHHHHHHHHHHcCCCEEEeeccccCc--ccc----ccchhhHHHHHHHHHHHcCCeEEEeeccc
Confidence 56777754 22333455555554 8999999987654331 100 00111122333333344444432211000
Q ss_pred hHHHHHHhhc-CC---hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC-CC---CCC--------CChHHHHHHHHHHHH
Q psy12516 119 SEMFSKRNIN-CT---IEESLERFSEVVSTALTNGIRVRGYISCVVGC-PY---EGA--------VPPHNVTRVATALYK 182 (327)
Q Consensus 119 sd~~~~~~l~-~s---~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~-~~---~~r--------~~~e~l~~~~~~~~~ 182 (327)
.. ....++. .+ +++.++.+++.++.|++.|.+..+. .++. +. ... .-.+.+.++++.+.+
T Consensus 94 ~~-~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lGa~~v~~---~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~ 169 (316)
T 3qxb_A 94 AS-YTYNHFLAPTLELQSLGYQHLKRAIDMTAAMEVPATGM---PFGSYSAADALNPARREEIYAIARDMWIELAAYAKR 169 (316)
T ss_dssp HH-HTSCBTTCSSHHHHHHHHHHHHHHHHHHHHTTCCEEEE---CCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc-cccccCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEe---cCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHh
Confidence 00 0000111 01 2345778899999999999986431 1221 00 000 011234455566667
Q ss_pred cCcCEEEecCC----CCccCHHHHHHHHHHHHHh-cCCCeEEE---eecCC----cCcHHHHHHHHHHhcCceeeeccc-
Q psy12516 183 MGCYEISLGDT----IGVGTPGTMRLMLEDVLTV-IPADRLAV---HCHDT----YGQALANILTAMEFGISVFDSSIA- 249 (327)
Q Consensus 183 ~g~~~i~l~Dt----~G~~~P~~~~~~~~~~~~~-~~~~~l~~---H~Hn~----~g~a~an~l~a~~~G~~~vd~s~~- 249 (327)
.|+..|.+--+ .-..+|.++.+++..+.+. .|.+-+.+ |.+-. .|......+..+..=+.+|+..=.
T Consensus 170 ~Gv~~l~lE~~~~~~~~~~t~~~~~~l~~~v~~~~~~~vg~~lD~~H~~~~~~~~~~~d~~~~l~~~~~~i~~vHlkD~~ 249 (316)
T 3qxb_A 170 QGLSMLYVEPVPLATEFPSSAADAARLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPWIAAYHIQQTD 249 (316)
T ss_dssp HTCCEEEECCCSCTTBSSCSHHHHHHHHHHHTTTSSSCEEEEEEHHHHTCHHHHGGGCSHHHHHHHHGGGEEEEEECBCC
T ss_pred cCCeEEEEEecCCccccCCCHHHHHHHHHHHhccCCCCEEEEEEccchheecccccccCHHHHHHHHHhhheEEeeecCC
Confidence 78874565432 1235688888888877431 23322222 33320 233333444433322444554422
Q ss_pred cCCCCCC-CCCCCCCccHHHHHHHHHhCCCC
Q psy12516 250 GLGGCPY-ARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 250 G~G~~p~-~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
+-..+-. .+| .|..+.+.++..|++.||+
T Consensus 250 ~~~d~h~~~~G-~G~id~~~i~~~L~~~gy~ 279 (316)
T 3qxb_A 250 GQLDRHWSFTQ-PGVVTPQRLQDFWDKYALT 279 (316)
T ss_dssp SSSCCCBCTTS-CSSCCHHHHHHHHHHTTCS
T ss_pred CCcCccCCCCC-CceECHHHHHHHHHHcCCC
Confidence 1111011 133 6999999999999997775
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=88.67 E-value=4.3 Score=36.23 Aligned_cols=45 Identities=11% Similarity=0.082 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecC-CCCc-cCHHHHHHHHHHHHHhc
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGD-TIGV-GTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~D-t~G~-~~P~~~~~~~~~~~~~~ 213 (327)
+.++..++++.+.+.|+|.+.+.- ..-. .+++.+.+.++.+.+..
T Consensus 83 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~ 129 (294)
T 3b4u_A 83 SIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKI 129 (294)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhc
Confidence 444555555555555555443322 1222 34455555555555554
|
| >4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria} | Back alignment and structure |
|---|
Probab=88.56 E-value=10 Score=35.10 Aligned_cols=203 Identities=14% Similarity=0.110 Sum_probs=114.4
Q ss_pred HHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCC---CCCCCCCC-------ccCCCcHHHHHHHhh-
Q psy12516 34 EDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGL---GGCPYARG-------ASGNVATEDLVYMLE- 101 (327)
Q Consensus 34 ~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~gl---g~~p~~~~-------~~gn~~~e~v~~~l~- 101 (327)
+.+.+.+| +++.|.|=+.++....+++-. +.|+..-...+..+ .+.++... ..--...+++.....
T Consensus 23 ~~Fi~~LP--KvELH~HLdGsl~p~tl~~LA~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~t~ed~~r~a~e 100 (380)
T 4gxw_A 23 RAFFHALP--KVELHCHLLGAVRHDTFVALAQRSGAPIERAEIDAFYARGEKPVGVLHVLRALDRYLLTRPDDLRRIAYE 100 (380)
T ss_dssp HHHHHHSC--EEECCBBGGGCCCHHHHHHHHHHHTCSCCTTHHHHHHCCCSSCCCSHHHHHHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHhCh--hHHhhcCCcCCCCHHHHHHHHHHhCCCCCcccHHHHHHhhhccccHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 56677788 599999999988877776544 57765422222111 11010000 000112233322222
Q ss_pred --hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHH-HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHH
Q psy12516 102 --GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTA-LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVAT 178 (327)
Q Consensus 102 --~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a-~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~ 178 (327)
+...+.|+....+.. ++......-+.+.+++++.+.+.++.+ ++.|+.+...++.. -..+++...+.++
T Consensus 101 ~~ed~a~dgV~Y~Eirf--~P~~~~~~~Gl~~~~vv~av~~g~~~a~~~~gi~~rlI~~~~------R~~~~e~a~~~~~ 172 (380)
T 4gxw_A 101 YLEDAAAHNVRHAEFFW--NPTGTVRVSGIPYADAQAAIVTGMRDAARDFGIGARLIPSID------REQDPDEAVAIVD 172 (380)
T ss_dssp HHHHHHTTTEEEEEEEE--CHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE------TTSCHHHHHHHHH
T ss_pred HHHHHHHCCCeEEEEEc--CHHHhccccCCCHHHHHHHHHHHHHHHHHhcCCcEEEEEeec------CCCCHHHHHHHHH
Confidence 223334555544432 222111224678888888887777765 45699887665542 1256788888887
Q ss_pred HHHHcC---cCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCceeeeccc
Q psy12516 179 ALYKMG---CYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIA 249 (327)
Q Consensus 179 ~~~~~g---~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~vd~s~~ 249 (327)
.+.+.. +-.|-|+-.=....|....+.+...|+. +.++.+|+=...+ ...|...|+. .|+++|+=.+.
T Consensus 173 ~a~~~~~~~VvG~dL~g~E~~~p~~~f~~~f~~ar~~--Gl~~t~HAGE~~~-p~~~i~~al~~lga~RIgHG~~ 244 (380)
T 4gxw_A 173 WMKANRADEVAGIGIDYRENDRPPELFWKAYRDARAA--GFRTTAHAGEFGM-PWRNVETAVDLLHVDRVDHGYT 244 (380)
T ss_dssp HHHHTCCTTBCEEEEESCCTTCCGGGGHHHHHHHHHT--TCEEEEEESCTTC-CHHHHHHHHHTSCCSEEEECGG
T ss_pred HHHHhCCCCEEEEeecCCCCCCCHHHHHHHHHHHHHc--CCCeeeeccccCC-chHHHHHHHHHcCCccccccee
Confidence 777653 3344443222234567777888887764 5788999876433 2356777875 79999875443
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.47 E-value=9.3 Score=34.05 Aligned_cols=115 Identities=14% Similarity=0.129 Sum_probs=65.8
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+...+.+. ...|.+|..+-++.+++.+.. ...|.+. .+..
T Consensus 23 g~iD~~~l~~lv~-~li~~Gv~gl~~~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-rvpviaG---------vg~~ 86 (297)
T 3flu_A 23 GSIHYEQLRDLID-WHIENGTDGIVAVGTTGES-----ATLSVEEHTAVIEAVVKHVAK-RVPVIAG---------TGAN 86 (297)
T ss_dssp SCBCHHHHHHHHH-HHHHTTCCEEEESSTTTTG-----GGSCHHHHHHHHHHHHHHHTT-SSCEEEE---------CCCS
T ss_pred CCcCHHHHHHHHH-HHHHcCCCEEEeCccccCc-----ccCCHHHHHHHHHHHHHHhCC-CCcEEEe---------CCCc
Confidence 5677666555443 3467788877776666552 234555544444444444432 2333221 1224
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.++..++++.+.+.|+|.+.+ +-..-..+++.+.+.++.+.+..+ +|+.+
T Consensus 87 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~-lPiil 138 (297)
T 3flu_A 87 NTVEAIALSQAAEKAGADYTLSVVPYYNKPSQEGIYQHFKTIAEATS-IPMII 138 (297)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC-SCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC-CCEEE
Confidence 5677778888888888876543 334344566777777777777653 45544
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=88.41 E-value=13 Score=33.03 Aligned_cols=192 Identities=10% Similarity=0.111 Sum_probs=100.5
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l 100 (327)
...++.++..+.+..++.-- .-+.++ -..+..+...++ .++...- +-|+ | .|..+++.-+. -
T Consensus 69 p~~T~~dI~~lc~eA~~~g~-aaVCV~-----P~~V~~a~~~L~~s~V~V~t--VigF---P-----~G~~~~~~Kv~-E 131 (288)
T 3oa3_A 69 LSATGSQIDVLCAEAKEYGF-ATVCVR-----PDYVSRAVQYLQGTQVGVTC--VIGF---H-----EGTYSTDQKVS-E 131 (288)
T ss_dssp TTCCHHHHHHHHHHHHHHTC-SEEEEC-----GGGHHHHHHHTTTSSCEEEE--EEST---T-----TSCSCHHHHHH-H
T ss_pred CCCCHHHHHHHHHHHHhcCC-cEEEEC-----HHHHHHHHHHcCCCCCeEEE--EeCC---C-----CCCCcHHHHHH-H
Confidence 45677888888777765321 223332 222334444442 2333322 2121 2 24445543221 2
Q ss_pred hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHH
Q psy12516 101 EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATAL 180 (327)
Q Consensus 101 ~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~ 180 (327)
-+.+++.|.|.+.+........ ....++..+.+..+.+.+.+..++| .+.. ...+.+.+...++..
T Consensus 132 a~~Ai~~GAdEIDmVINig~lk-----~g~~~~v~~eI~~V~~a~~~~~lKV--IlEt-------~~Lt~eei~~A~~ia 197 (288)
T 3oa3_A 132 AKRAMQNGASELDMVMNYPWLS-----EKRYTDVFQDIRAVRLAAKDAILKV--ILET-------SQLTADEIIAGCVLS 197 (288)
T ss_dssp HHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTTTSEEEE--ECCG-------GGCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeehhhhc-----CCcHHHHHHHHHHHHHHhcCCCceE--EEEC-------CCCCHHHHHHHHHHH
Confidence 2456778888776554433211 1223444566666666654432222 2222 246788899999999
Q ss_pred HHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 181 YKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 181 ~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.++|+|-|--.- +.|-.+++++.- ++.+.+..+. ++.+-.---.. ....+++.+++||++|=+|
T Consensus 198 ~eaGADfVKTSTGf~~~GAT~edv~l-mr~~v~~~g~-~v~VKAAGGIr-t~edAl~mi~aGA~RiGtS 263 (288)
T 3oa3_A 198 SLAGADYVKTSTGFNGPGASIENVSL-MSAVCDSLQS-ETRVKASGGIR-TIEDCVKMVRAGAERLGAS 263 (288)
T ss_dssp HHTTCSEEECCCSSSSCCCCHHHHHH-HHHHHHHSSS-CCEEEEESSCC-SHHHHHHHHHTTCSEEEES
T ss_pred HHcCCCEEEcCCCCCCCCCCHHHHHH-HHHHHHHhCC-CceEEEeCCCC-CHHHHHHHHHcCCceeehh
Confidence 999999876541 123577888754 4444433322 23332221111 1267788899999987553
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=88.36 E-value=12 Score=33.42 Aligned_cols=31 Identities=23% Similarity=0.395 Sum_probs=18.3
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
|..+.+.+...++ ..++.|++.+-+...+.+
T Consensus 20 g~iD~~~l~~lv~-~li~~Gv~gl~v~GttGE 50 (300)
T 3eb2_A 20 GRVRADVMGRLCD-DLIQAGVHGLTPLGSTGE 50 (300)
T ss_dssp SCBCHHHHHHHHH-HHHHTTCSCBBTTSGGGT
T ss_pred CCcCHHHHHHHHH-HHHHcCCCEEEECccccC
Confidence 5666665544433 345677777766655554
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.36 E-value=3.7 Score=36.63 Aligned_cols=81 Identities=10% Similarity=0.057 Sum_probs=67.4
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++.+.+... .+|+-.++ +|+..-++..+..|.++|
T Consensus 16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G 95 (292)
T 2vc6_A 16 DRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAG 95 (292)
T ss_dssp TEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999999 5889998899998887764 36666654 456677788888899999
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
++.+=.
T Consensus 96 adavlv 101 (292)
T 2vc6_A 96 ADGVLI 101 (292)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 998744
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=88.03 E-value=11 Score=34.73 Aligned_cols=120 Identities=15% Similarity=0.115 Sum_probs=76.8
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC---------------C----CC-----------CCCCh--------
Q psy12516 129 CTIEESLERFSEVVSTALTNGIRVRGYISCVVGC---------------P----YE-----------GAVPP-------- 170 (327)
Q Consensus 129 ~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~---------------~----~~-----------~r~~~-------- 170 (327)
...++.++..+++++.+++.|-++.+.|... |. | .. ....|
T Consensus 84 i~~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI 162 (376)
T 1icp_A 84 IWTKEQVEAWKPIVDAVHAKGGIFFCQIWHV-GRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEI 162 (376)
T ss_dssp CSSHHHHHHHHHHHHHHHHTTCEEEEEEECC-TTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTH
T ss_pred cCCHHHHHHHHHHHHHHHhcCCeEEEEeecC-CCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHH
Confidence 3345668889999999999999887777641 10 0 00 00112
Q ss_pred ----HHHHHHHHHHHHcCcCEEEec-------------------CCCCcc---CHHHHHHHHHHHHHhcCCCeEEEeecC
Q psy12516 171 ----HNVTRVATALYKMGCYEISLG-------------------DTIGVG---TPGTMRLMLEDVLTVIPADRLAVHCHD 224 (327)
Q Consensus 171 ----e~l~~~~~~~~~~g~~~i~l~-------------------Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~~H~Hn 224 (327)
+.+.+.++.+.++|.|.|.|- |..|-. .++.+.++++.+|+.++..+|.+-.+-
T Consensus 163 ~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~ 242 (376)
T 1icp_A 163 PQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISP 242 (376)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEecc
Confidence 466777888889999988763 333432 244578889999998863278876662
Q ss_pred C-------cCc----HHHHHHHHHHhcCceeeeccc
Q psy12516 225 T-------YGQ----ALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 225 ~-------~g~----a~an~l~a~~~G~~~vd~s~~ 249 (327)
. .+. ++..+....++|+++|+.+..
T Consensus 243 ~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~ 278 (376)
T 1icp_A 243 FAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEP 278 (376)
T ss_dssp TCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECC
T ss_pred ccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 1 133 233344445789999998754
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=88.00 E-value=11 Score=32.84 Aligned_cols=183 Identities=15% Similarity=0.138 Sum_probs=97.7
Q ss_pred HHHHHHHHcCcCEEEecCCc--cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~--G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+-+..+.+.|+|+|.||+.. |-.||.. -+++.+++..+ +| +-+-++.=|
T Consensus 12 ~~a~~A~~~GAdRIELc~~L~~GGlTPS~--g~i~~~~~~~~-ip--------------------------v~vMIRPR~ 62 (256)
T 1twd_A 12 ECALTAQQNGADRVELCAAPKEGGLTPSL--GVLKSVRQRVT-IP--------------------------VHPIIRPRG 62 (256)
T ss_dssp HHHHHHHHTTCSEEEECBCGGGTCBCCCH--HHHHHHHHHCC-SC--------------------------EEEBCCSSS
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCCCCCH--HHHHHHHHHcC-Cc--------------------------eEEEECCCC
Confidence 34667889999999999964 8888874 33444555442 22 223444333
Q ss_pred CCCCCCCccCCCcHHHHHHHhh--hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy12516 80 GCPYARGASGNVATEDLVYMLE--GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYIS 157 (327)
Q Consensus 80 ~~p~~~~~~gn~~~e~v~~~l~--~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~ 157 (327)
+ .|. -+.+++-.+.. +...+.|.|.+-+=.-..+. ..+ .+.++++++.++ |+.+. +-
T Consensus 63 G-dF~------Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg------~iD----~~~~~~Li~~a~--~~~vT--FH 121 (256)
T 1twd_A 63 G-DFC------YSDGEFAAILEDVRTVRELGFPGLVTGVLDVDG------NVD----MPRMEKIMAAAG--PLAVT--FH 121 (256)
T ss_dssp S-CSC------CCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS------SBC----HHHHHHHHHHHT--TSEEE--EC
T ss_pred C-CCc------CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCC------CcC----HHHHHHHHHHhC--CCcEE--EE
Confidence 2 111 12233332222 24566777765431111110 011 456777787764 66653 33
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc-CHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG-TPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTA 236 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~-~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a 236 (327)
.+| +--.+ ..+..+++.++|+++|- |+|.. +..+-.+.++.+.+....+.|-.= -|.-..|.-.-
T Consensus 122 RAf----D~~~d---~~~ale~L~~lG~~rIL---TSG~~~~a~~g~~~L~~Lv~~a~~i~Im~G----gGv~~~Ni~~l 187 (256)
T 1twd_A 122 RAF----DMCAN---PLYTLNNLAELGIARVL---TSGQKSDALQGLSKIMELIAHRDAPIIMAG----AGVRAENLHHF 187 (256)
T ss_dssp GGG----GGCSC---HHHHHHHHHHHTCCEEE---ECTTSSSTTTTHHHHHHHHTSSSCCEEEEE----SSCCTTTHHHH
T ss_pred Cch----hccCC---HHHHHHHHHHcCCCEEE---CCCCCCCHHHHHHHHHHHHHhhCCcEEEec----CCcCHHHHHHH
Confidence 333 11122 34567888999999987 77753 334444556666554332222110 13334455444
Q ss_pred HHhcCceeeecc
Q psy12516 237 MEFGISVFDSSI 248 (327)
Q Consensus 237 ~~~G~~~vd~s~ 248 (327)
+..|++.++.|-
T Consensus 188 ~~tGv~e~H~Sa 199 (256)
T 1twd_A 188 LDAGVLEVHSSA 199 (256)
T ss_dssp HHHTCSEEEECC
T ss_pred HHcCCCeEeECC
Confidence 478999999773
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=87.95 E-value=7.5 Score=32.51 Aligned_cols=23 Identities=26% Similarity=0.257 Sum_probs=17.7
Q ss_pred CcCcHHHHHHHHHHhcCceeeec
Q psy12516 225 TYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 225 ~~g~a~an~l~a~~~G~~~vd~s 247 (327)
+.|....|.-.+.++|++.+.+.
T Consensus 176 ~GGI~~~~~~~~~~~Gad~vvvG 198 (220)
T 2fli_A 176 DGGVDNKTIRACYEAGANVFVAG 198 (220)
T ss_dssp ESSCCTTTHHHHHHHTCCEEEES
T ss_pred ECcCCHHHHHHHHHcCCCEEEEC
Confidence 34666678888889999998864
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=14 Score=34.17 Aligned_cols=119 Identities=15% Similarity=0.133 Sum_probs=75.5
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC---------------C----CC----------------CCCCh----
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGC---------------P----YE----------------GAVPP---- 170 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~---------------~----~~----------------~r~~~---- 170 (327)
..++.++..+++++.+|+.|-++.+.|... |. | .. ....|
T Consensus 79 ~~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt 157 (377)
T 2r14_A 79 WTDAQEAGWKGVVEAVHAKGGRIALQLWHV-GRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALE 157 (377)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECC
T ss_pred CCHHHHHHHHHHHHHHhhcCCeEEEEccCC-ccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCC
Confidence 345567889999999999998877776541 10 0 00 00122
Q ss_pred --------HHHHHHHHHHHHcCcCEEEec-------------------CCCCccC---HHHHHHHHHHHHHhcCCCeEEE
Q psy12516 171 --------HNVTRVATALYKMGCYEISLG-------------------DTIGVGT---PGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 171 --------e~l~~~~~~~~~~g~~~i~l~-------------------Dt~G~~~---P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.+.+.++.+.++|.|.|.|- |..|-.. ++.+.++++.+|+.++.-+|++
T Consensus 158 ~~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~v 237 (377)
T 2r14_A 158 TDEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGI 237 (377)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEE
Confidence 566677777888999988872 4444332 4457788999999886327777
Q ss_pred eecC--C-----cCcHHH----HHHHHHHhcCceeeeccc
Q psy12516 221 HCHD--T-----YGQALA----NILTAMEFGISVFDSSIA 249 (327)
Q Consensus 221 H~Hn--~-----~g~a~a----n~l~a~~~G~~~vd~s~~ 249 (327)
-..- . .|.... -+....++|+++|+.+-.
T Consensus 238 rls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~ 277 (377)
T 2r14_A 238 RLTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEP 277 (377)
T ss_dssp EECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred EeccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 6432 1 133333 344455789999998653
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=87.80 E-value=1.1 Score=39.05 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=61.1
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHH--HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGT--MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~--~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.+...+.+..+.+.+.|+|.+-+-=+-|...|.- =...++.+|+..|+.++.+|.+-+.--.. .-.+.++|+++|.
T Consensus 37 aD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~--i~~~~~aGAd~it 114 (246)
T 3inp_A 37 ADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDAL--IESFAKAGATSIV 114 (246)
T ss_dssp SCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHH--HHHHHHHTCSEEE
T ss_pred CChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHH--HHHHHHcCCCEEE
Confidence 4666788889999999999554433335443311 12467788888877899999994332221 2346689999876
Q ss_pred eccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCC
Q psy12516 246 SSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281 (327)
Q Consensus 246 ~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~ 281 (327)
.-.- +. ..+..++..+++.|.+.+
T Consensus 115 vH~E-----------a~-~~~~~~i~~ir~~G~k~G 138 (246)
T 3inp_A 115 FHPE-----------AS-EHIDRSLQLIKSFGIQAG 138 (246)
T ss_dssp ECGG-----------GC-SCHHHHHHHHHTTTSEEE
T ss_pred Eccc-----------cc-hhHHHHHHHHHHcCCeEE
Confidence 5322 11 234555656665554433
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=87.66 E-value=1 Score=41.42 Aligned_cols=89 Identities=20% Similarity=0.270 Sum_probs=67.3
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.+.+...+.++++.++|+|.|.++ .-+ .+-.+-++.+++..+ +||..-.|-|+-+| ++|+++|++.+ .
T Consensus 43 ~D~~atv~Qi~~l~~aG~diVRva----vp~-~~~a~al~~I~~~~~-vPlvaDiHf~~~la----l~a~e~G~dkl--R 110 (366)
T 3noy_A 43 HDVEATLNQIKRLYEAGCEIVRVA----VPH-KEDVEALEEIVKKSP-MPVIADIHFAPSYA----FLSMEKGVHGI--R 110 (366)
T ss_dssp TCHHHHHHHHHHHHHTTCCEEEEE----CCS-HHHHHHHHHHHHHCS-SCEEEECCSCHHHH----HHHHHTTCSEE--E
T ss_pred cCHHHHHHHHHHHHHcCCCEEEeC----CCC-hHHHHHHHHHHhcCC-CCEEEeCCCCHHHH----HHHHHhCCCeE--E
Confidence 678888899999999999988873 223 344677999999876 69999999999777 45899999974 3
Q ss_pred cccCCCCCCCCCCCCCc----cHHHHHHHHHhCCCC
Q psy12516 248 IAGLGGCPYARGASGNV----ATEDLVYMLEGMGIE 279 (327)
Q Consensus 248 ~~G~G~~p~~~g~~Gn~----~~e~~~~~l~~~g~~ 279 (327)
++ .||. ..++++...++.|+.
T Consensus 111 IN-----------PGNig~~~~~~~vv~~ak~~~~p 135 (366)
T 3noy_A 111 IN-----------PGNIGKEEIVREIVEEAKRRGVA 135 (366)
T ss_dssp EC-----------HHHHSCHHHHHHHHHHHHHHTCE
T ss_pred EC-----------CcccCchhHHHHHHHHHHHcCCC
Confidence 33 3555 456788888876653
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=87.63 E-value=14 Score=33.91 Aligned_cols=119 Identities=16% Similarity=0.162 Sum_probs=75.4
Q ss_pred ChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC--------------C----C-C---------------CCCCh-----
Q psy12516 130 TIEESLERFSEVVSTALTNGIRVRGYISCVVGC--------------P----Y-E---------------GAVPP----- 170 (327)
Q Consensus 130 s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~--------------~----~-~---------------~r~~~----- 170 (327)
..++.++..+++++.+|+.|-++.+.|... |. | . . ....|
T Consensus 75 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~-Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~ 153 (365)
T 2gou_A 75 YTPEQIAGWRIVTEAVHAKGCAIFAQLWHV-GRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTK 153 (365)
T ss_dssp SSHHHHHHHHHHHHHHHHHSCEEEEEEECC-TTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCH
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEeecC-CCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCH
Confidence 345557889999999999998877776531 10 0 0 0 00122
Q ss_pred -------HHHHHHHHHHHHcCcCEEEec-------------------CCCCcc---CHHHHHHHHHHHHHhcCCCeEEEe
Q psy12516 171 -------HNVTRVATALYKMGCYEISLG-------------------DTIGVG---TPGTMRLMLEDVLTVIPADRLAVH 221 (327)
Q Consensus 171 -------e~l~~~~~~~~~~g~~~i~l~-------------------Dt~G~~---~P~~~~~~~~~~~~~~~~~~l~~H 221 (327)
+.+.+.++.+.++|.|.|.|- |..|-. .++.+.++++.+|+.++.-+|++-
T Consensus 154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vr 233 (365)
T 2gou_A 154 ADIAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVR 233 (365)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEE
Confidence 566777778889999998882 333332 134577889999998852277774
Q ss_pred ecC--C-----cCcHH----HHHHHHHHhcCceeeeccc
Q psy12516 222 CHD--T-----YGQAL----ANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 222 ~Hn--~-----~g~a~----an~l~a~~~G~~~vd~s~~ 249 (327)
..- . .|... .-+..+.++|+++|+.+-.
T Consensus 234 is~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~ 272 (365)
T 2gou_A 234 LAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEV 272 (365)
T ss_dssp ECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred EccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 432 1 12333 3345556889999998754
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=87.58 E-value=12 Score=32.06 Aligned_cols=113 Identities=14% Similarity=0.087 Sum_probs=69.5
Q ss_pred CeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCCC--eEEEeecC
Q psy12516 150 IRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPAD--RLAVHCHD 224 (327)
Q Consensus 150 i~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~~--~l~~H~Hn 224 (327)
+++...+. .|.. ..+.+.-..-++. .+.|+|.|-+.=-.| .-.-..+.+-+..+++..++. ++-+-+--
T Consensus 51 v~v~tvig----FP~G-~~~~~~k~~E~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~ 124 (226)
T 1vcv_A 51 VKLCVVAD----FPFG-ALPTASRIALVSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPY 124 (226)
T ss_dssp SEEEEEES----TTTC-CSCHHHHHHHHHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGG
T ss_pred CeEEEEeC----CCCC-CCchHHHHHHHHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccC
Confidence 66654433 3433 3555555555666 889999998877777 345677888888888876542 22221110
Q ss_pred -CcCcHHHHHHHHHHhcCceeeeccc--------cCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 225 -TYGQALANILTAMEFGISVFDSSIA--------GLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 225 -~~g~a~an~l~a~~~G~~~vd~s~~--------G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
+.-.=.-.+..|+++|+|+|-+|-+ ++|. +|++.+|++-.+.+.
T Consensus 125 Lt~eei~~a~~ia~eaGADfVKTSTGf~~~~~~~~~~~-------~~gAt~~dv~lm~~~ 177 (226)
T 1vcv_A 125 LRDEERYTLYDIIAEAGAHFIKSSTGFAEEAYAARQGN-------PVHSTPERAAAIARY 177 (226)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEECCCSCCCHHHHHHTTC-------CSSCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCccccccccCC-------CCCCCHHHHHHHHHH
Confidence 1111234566788999999998742 1222 467888887655543
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=87.26 E-value=8.7 Score=32.85 Aligned_cols=206 Identities=12% Similarity=0.055 Sum_probs=104.9
Q ss_pred CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCc-cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 43 DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGA-SGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 43 ~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~-~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
.++++....-..+.+...++.+ ++|.+.||......-+.+|.... ....+.++ +..+++...+.|+....+....
T Consensus 10 mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~gl~i~~~~~~~-- 86 (262)
T 3p6l_A 10 WRLGMQSYSFHLFPLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQT-QKEIKELAASKGIKIVGTGVYV-- 86 (262)
T ss_dssp EEEEEEGGGGTTSCHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHH-HHHHHHHHHHTTCEEEEEEEEC--
T ss_pred cEEEEEecccCCCCHHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHH-HHHHHHHHHHcCCeEEEEeccC--
Confidence 7899988888777888887766 79999999775432110000000 01122222 2223334444454432221111
Q ss_pred HHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc---c
Q psy12516 121 MFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV---G 197 (327)
Q Consensus 121 ~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~---~ 197 (327)
+.+ .+.+++.++.|++.|.+.... .| ..+.+.++++.+.+.|+. +.+=-..+. .
T Consensus 87 -------~~~----~~~~~~~i~~A~~lGa~~v~~------~~-----~~~~~~~l~~~a~~~gv~-l~~En~~~~~~~~ 143 (262)
T 3p6l_A 87 -------AEK----SSDWEKMFKFAKAMDLEFITC------EP-----ALSDWDLVEKLSKQYNIK-ISVHNHPQPSDYW 143 (262)
T ss_dssp -------CSS----TTHHHHHHHHHHHTTCSEEEE------CC-----CGGGHHHHHHHHHHHTCE-EEEECCSSSSSSS
T ss_pred -------Ccc----HHHHHHHHHHHHHcCCCEEEe------cC-----CHHHHHHHHHHHHHhCCE-EEEEeCCCccccC
Confidence 011 345677888899988875321 11 235677788888888875 344333332 3
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCceeeeccc-----cCCC-CCCCCCCCCCccHHH
Q psy12516 198 TPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSSIA-----GLGG-CPYARGASGNVATED 268 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~~vd~s~~-----G~G~-~p~~~g~~Gn~~~e~ 268 (327)
+|.++.+++. ...|.+.+.+ |.+.. |......+..+..=+.+|+..=. |.+. ....+| .|..+...
T Consensus 144 ~~~~~~~ll~---~~~~~~g~~~D~~h~~~~-g~d~~~~l~~~~~~i~~vH~~D~~~~~~~~~~~~~~~~G-~G~id~~~ 218 (262)
T 3p6l_A 144 KPENLLKAIS---GRSQSLGSCSDVGHWRRE-GLNQIDCLKQLKGRIISLHFKDIAPKKAGENEQHDVIWG-TGILDVKG 218 (262)
T ss_dssp SHHHHHHHHT---TSCTTEEEEEEHHHHHHT-TCCHHHHHHHTTTCEEEEEECEECCCCTTCSCCCEECTT-SSSSCHHH
T ss_pred CHHHHHHHHH---hCCCceEEEechHHHHhc-CCCHHHHHHHHhhhheEEeeccCCccccCcCccccCCCC-CCccCHHH
Confidence 6777666654 1223322222 33211 22222222222111223322211 1111 011234 68999999
Q ss_pred HHHHHHhCCCC
Q psy12516 269 LVYMLEGMGIE 279 (327)
Q Consensus 269 ~~~~l~~~g~~ 279 (327)
++..|++.||+
T Consensus 219 ~~~~l~~~gy~ 229 (262)
T 3p6l_A 219 MLKELKSQNFK 229 (262)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHCCCC
Confidence 99999997776
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=87.08 E-value=15 Score=32.24 Aligned_cols=191 Identities=10% Similarity=0.035 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhhcCCCeeEEEec-Cccc-hHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhh
Q psy12516 28 TMRLMLEDVLTVIPADRLAVHCH-DTYG-QALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKS 104 (327)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~H~h-~~~g-~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~ 104 (327)
++.+.++.+++.-. ..+.-+.- -+.. -.....+.++ ++|++.||..+.. .+|..-+ -++.....++
T Consensus 4 ri~~~f~~~~~~~~-~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPf--SDP~aDG--------p~Iq~a~~~A 72 (267)
T 3vnd_A 4 RYQAKFAALKAQDK-GAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPF--SDPLADG--------PVIQGANLRS 72 (267)
T ss_dssp HHHHHHHHHHHHTC-CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCC--SCCTTCC--------HHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCC--CCCCCCC--------HHHHHHHHHH
Confidence 56667777766433 22333332 2221 1233445555 6999999988764 2343221 1233334455
Q ss_pred cccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHH---HHHHHHHHH
Q psy12516 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHN---VTRVATALY 181 (327)
Q Consensus 105 ~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~---l~~~~~~~~ 181 (327)
++.|++.-. +.+.++..|+.+.++-..++. + +++=+ +.++++.+.
T Consensus 73 L~~G~~~~~------------------------~~~~v~~ir~~~~~~Pivlm~-Y-------~npv~~~g~e~f~~~~~ 120 (267)
T 3vnd_A 73 LAAGTTSSD------------------------CFDIITKVRAQHPDMPIGLLL-Y-------ANLVFANGIDEFYTKAQ 120 (267)
T ss_dssp HHTTCCHHH------------------------HHHHHHHHHHHCTTCCEEEEE-C-------HHHHHHHCHHHHHHHHH
T ss_pred HHcCCCHHH------------------------HHHHHHHHHhcCCCCCEEEEe-c-------CcHHHHhhHHHHHHHHH
Confidence 555544332 223344444332221122221 1 12211 256677788
Q ss_pred HcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee-ccccC-CCCCCCCC
Q psy12516 182 KMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS-SIAGL-GGCPYARG 259 (327)
Q Consensus 182 ~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~-s~~G~-G~~p~~~g 259 (327)
++|+|.+.+.| +.|++..+++..+++. ++.+.+-.-.+.... -.....+.+-.+|-. |+.|. |.
T Consensus 121 ~aGvdgvii~D----lp~ee~~~~~~~~~~~--gl~~i~liaP~t~~e--ri~~i~~~~~gfvY~vS~~GvTG~------ 186 (267)
T 3vnd_A 121 AAGVDSVLIAD----VPVEESAPFSKAAKAH--GIAPIFIAPPNADAD--TLKMVSEQGEGYTYLLSRAGVTGT------ 186 (267)
T ss_dssp HHTCCEEEETT----SCGGGCHHHHHHHHHT--TCEEECEECTTCCHH--HHHHHHHHCCSCEEESCCCCCC--------
T ss_pred HcCCCEEEeCC----CCHhhHHHHHHHHHHc--CCeEEEEECCCCCHH--HHHHHHHhCCCcEEEEecCCCCCC------
Confidence 88888888877 4566777777776654 222222222222222 222222333344544 55553 33
Q ss_pred CCC-CccHHHHHHHHHh
Q psy12516 260 ASG-NVATEDLVYMLEG 275 (327)
Q Consensus 260 ~~G-n~~~e~~~~~l~~ 275 (327)
+.+ ...+.+++..+++
T Consensus 187 ~~~~~~~~~~~v~~vr~ 203 (267)
T 3vnd_A 187 ESKAGEPIENILTQLAE 203 (267)
T ss_dssp ------CHHHHHHHHHT
T ss_pred ccCCcHHHHHHHHHHHH
Confidence 332 2346677777765
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=87.02 E-value=13 Score=31.58 Aligned_cols=189 Identities=11% Similarity=0.046 Sum_probs=100.9
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l 100 (327)
...++.+++.+++..++.- |..-+..-..+..+...++ .++. +-+.++ + ..|..+++..+. -
T Consensus 14 p~~t~~~i~~l~~~a~~~~------~~aVcv~p~~v~~~~~~l~~~~v~-v~~vig-F--------P~G~~~~~~k~~-e 76 (220)
T 1ub3_A 14 PTATLEEVAKAAEEALEYG------FYGLCIPPSYVAWVRARYPHAPFR-LVTVVG-F--------PLGYQEKEVKAL-E 76 (220)
T ss_dssp TTCCHHHHHHHHHHHHHHT------CSEEECCGGGHHHHHHHCTTCSSE-EEEEES-T--------TTCCSCHHHHHH-H
T ss_pred CCCCHHHHHHHHHHHHHhC------CCEEEECHHHHHHHHHHhCCCCce-EEEEec-C--------CCCCCchHHHHH-H
Confidence 3457788888888777652 2222221122333333332 2333 333332 2 123445543332 2
Q ss_pred hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHH
Q psy12516 101 EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATAL 180 (327)
Q Consensus 101 ~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~ 180 (327)
-+.+++.|.|.+.+........ ....++..+.+..+.+.+++.+++|- +.. ...+++++...++..
T Consensus 77 ~~~Ai~~GAdevd~vinig~~~-----~g~~~~v~~ei~~v~~a~~~~~lkvI--let-------~~l~~e~i~~a~~ia 142 (220)
T 1ub3_A 77 AALACARGADEVDMVLHLGRAK-----AGDLDYLEAEVRAVREAVPQAVLKVI--LET-------GYFSPEEIARLAEAA 142 (220)
T ss_dssp HHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHSTTSEEEEE--CCG-------GGSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecccchhhh-----CCCHHHHHHHHHHHHHHHcCCCceEE--Eec-------CCCCHHHHHHHHHHH
Confidence 2456778888776544333211 12334556677777777755444432 222 235789999999999
Q ss_pred HHcCcCEEEecC--CCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 181 YKMGCYEISLGD--TIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 181 ~~~g~~~i~l~D--t~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.++|+|-|--.- +.|-.+|+++..+.+.+. +.++|-.=. -.- ....+++-+++|+++|=+|
T Consensus 143 ~eaGADfVKTsTGf~~~gat~~dv~~m~~~vg---~~v~VkaaG--Gir-t~~~al~~i~aGa~RiG~S 205 (220)
T 1ub3_A 143 IRGGADFLKTSTGFGPRGASLEDVALLVRVAQ---GRAQVKAAG--GIR-DRETALRMLKAGASRLGTS 205 (220)
T ss_dssp HHHTCSEEECCCSSSSCCCCHHHHHHHHHHHT---TSSEEEEES--SCC-SHHHHHHHHHTTCSEEEET
T ss_pred HHhCCCEEEeCCCCCCCCCCHHHHHHHHHhhC---CCCeEEEEC--CCC-CHHHHHHHHHCCCcccchh
Confidence 999999876432 135568888777554431 223333321 000 1256677778999977554
|
| >1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* | Back alignment and structure |
|---|
Probab=86.94 E-value=12 Score=33.32 Aligned_cols=115 Identities=17% Similarity=0.176 Sum_probs=62.7
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+...+.+. ...+.+|..+-++.+++.+.. .+.|.+. .+..
T Consensus 28 g~iD~~~l~~lv~-~li~~Gv~gl~v~GtTGE~-----~~Ls~eEr~~v~~~~~~~~~g-rvpViaG---------vg~~ 91 (301)
T 1xky_A 28 GNIDFAKTTKLVN-YLIDNGTTAIVVGGTTGES-----PTLTSEEKVALYRHVVSVVDK-RVPVIAG---------TGSN 91 (301)
T ss_dssp SSBCHHHHHHHHH-HHHHTTCCEEEESSTTTTG-----GGSCHHHHHHHHHHHHHHHTT-SSCEEEE---------CCCS
T ss_pred CCcCHHHHHHHHH-HHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CceEEeC---------CCCC
Confidence 6677666554433 3466788877666555542 233445544444444444322 2333211 1224
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.++..++++.+.+.|+|.+.+ +-..-..+++.+.+.++.+.+..+ +||.+
T Consensus 92 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiil 143 (301)
T 1xky_A 92 NTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTP-LPVML 143 (301)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCS-SCEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 5567777777777777775443 333334566777777777776553 34443
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=86.85 E-value=16 Score=32.32 Aligned_cols=68 Identities=13% Similarity=0.154 Sum_probs=41.6
Q ss_pred HHHHHHHHcCcCEEEecC-Cc--c---ccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEec
Q psy12516 2 KVASALYKMGCYEISLGD-TI--G---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDSS 74 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~--G---~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~ 74 (327)
+.++++.+.|+|.|-+.= ++ | +...+++++++..++.... ++++.+++.+- .-+.+|+++|++.|...
T Consensus 33 ~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSIDT~~~-----~va~aAl~aGa~iINdv 107 (280)
T 1eye_A 33 KHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSIDTMRA-----DVARAALQNGAQMVNDV 107 (280)
T ss_dssp HHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEEECSCH-----HHHHHHHHTTCCEEEET
T ss_pred HHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEEeCCCH-----HHHHHHHHcCCCEEEEC
Confidence 567889999999988873 22 2 2223445555554444321 47888876654 35578889999998743
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=86.66 E-value=2.3 Score=36.52 Aligned_cols=109 Identities=12% Similarity=0.048 Sum_probs=58.4
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecC----CCCccCHHHHHHHHHHHHHhcC-
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGD----TIGVGTPGTMRLMLEDVLTVIP- 214 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~D----t~G~~~P~~~~~~~~~~~~~~~- 214 (327)
+.++.+++.|+.+...+. |. ++.+.+..+. .++|-|++-- +.|...+....+.++.+++..+
T Consensus 103 ~~~~~i~~~g~~~gv~~~-----p~---t~~e~~~~~~-----~~~D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~ 169 (230)
T 1tqj_A 103 RTLCQIRELGKKAGAVLN-----PS---TPLDFLEYVL-----PVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDE 169 (230)
T ss_dssp HHHHHHHHTTCEEEEEEC-----TT---CCGGGGTTTG-----GGCSEEEEESSCC----CCCCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcEEEEEe-----CC---CcHHHHHHHH-----hcCCEEEEEEeccccCCccCcHHHHHHHHHHHHHHHh
Confidence 456667778887754331 11 2223322221 1567553322 2232333445556666666552
Q ss_pred ---CCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 215 ---ADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 215 ---~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
+.++.+ +.|....|.-...++|++.+=+.-.= .+..+.++.+..|++
T Consensus 170 ~~~~~~I~v----~GGI~~~~~~~~~~aGad~vvvGSai----------~~a~d~~~~~~~l~~ 219 (230)
T 1tqj_A 170 RGLDPWIEV----DGGLKPNNTWQVLEAGANAIVAGSAV----------FNAPNYAEAIAGVRN 219 (230)
T ss_dssp HTCCCEEEE----ESSCCTTTTHHHHHHTCCEEEESHHH----------HTSSCHHHHHHHHHT
T ss_pred cCCCCcEEE----ECCcCHHHHHHHHHcCCCEEEECHHH----------HCCCCHHHHHHHHHH
Confidence 456666 66877788888899999875432111 122346677767764
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=86.64 E-value=15 Score=31.75 Aligned_cols=189 Identities=14% Similarity=0.160 Sum_probs=104.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l 100 (327)
...++.++.++++..++.- |..-+.+-..+..+...++ .++..-- .+ |+ | .|+.+++.-+. -
T Consensus 38 p~~t~~~i~~lc~eA~~~~------~~aVcV~p~~v~~a~~~L~~s~v~v~t-Vi-gF---P-----~G~~~~~~Kv~-E 100 (239)
T 3ngj_A 38 ADATEEQIRKLCSEAAEYK------FASVCVNPTWVPLCAELLKGTGVKVCT-VI-GF---P-----LGATPSEVKAY-E 100 (239)
T ss_dssp TTCCHHHHHHHHHHHHHHT------CSEEEECGGGHHHHHHHHTTSSCEEEE-EE-ST---T-----TCCSCHHHHHH-H
T ss_pred CCCCHHHHHHHHHHHHhcC------CcEEEECHHHHHHHHHHhCCCCCeEEE-Ee-cc---C-----CCCCchHHHHH-H
Confidence 4678888888888776642 2222223333444555552 2332221 12 21 2 24555543322 1
Q ss_pred hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHH
Q psy12516 101 EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATAL 180 (327)
Q Consensus 101 ~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~ 180 (327)
-+.+++.|.|.+.+........ ....++..+.+..+++.+. +..+.+.+.. +..+++.+.+.++..
T Consensus 101 a~~Ai~~GAdEIDmViNig~lk-----~g~~~~v~~eI~~v~~a~~--~~~lKVIlEt-------~~Lt~eei~~a~~ia 166 (239)
T 3ngj_A 101 TKVAVEQGAEEVDMVINIGMVK-----AKKYDDVEKDVKAVVDASG--KALTKVIIEC-------CYLTNEEKVEVCKRC 166 (239)
T ss_dssp HHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHHT--TSEEEEECCG-------GGSCHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeehHHhc-----cccHHHHHHHHHHHHHHhc--CCceEEEEec-------CCCCHHHHHHHHHHH
Confidence 2356777888776655444321 2233445666777777764 3333333322 246888999999999
Q ss_pred HHcCcCEEEecCC--CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 181 YKMGCYEISLGDT--IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 181 ~~~g~~~i~l~Dt--~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
.++|+|-|--.-- .|-.+++++..+-+.+.. ++.+-.---.. ....+++.+++|++++=+|
T Consensus 167 ~~aGADfVKTSTGf~~ggAt~~dv~lmr~~vg~-----~v~VKasGGIr-t~~da~~~i~aGA~riGtS 229 (239)
T 3ngj_A 167 VAAGAEYVKTSTGFGTHGATPEDVKLMKDTVGD-----KALVKAAGGIR-TFDDAMKMINNGASRIGAS 229 (239)
T ss_dssp HHHTCSEEECCCSSSSCCCCHHHHHHHHHHHGG-----GSEEEEESSCC-SHHHHHHHHHTTEEEEEES
T ss_pred HHHCcCEEECCCCCCCCCCCHHHHHHHHHhhCC-----CceEEEeCCCC-CHHHHHHHHHhcccceecc
Confidence 9999998765421 345778877665444422 33332221111 1267788889999987554
|
| >1oy0_A Ketopantoate hydroxymethyltransferase; domain swapping, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: c.1.12.8 | Back alignment and structure |
|---|
Probab=86.64 E-value=8.1 Score=34.28 Aligned_cols=151 Identities=13% Similarity=0.159 Sum_probs=83.9
Q ss_pred HHHHHHHcCcCEEEecCCcc----------ccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 3 VASALYKMGCYEISLGDTIG----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G----------~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
.++.+.++|+|.|...|+.| ..|..++-..++.+.+..+... -..|
T Consensus 46 sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~------------------------vvaD 101 (281)
T 1oy0_A 46 TARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHAL------------------------VVAD 101 (281)
T ss_dssp HHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSE------------------------EEEE
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhcCCCCe------------------------EEEE
Confidence 35677889999999888764 4567777777888877665211 1233
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
.-+++.+ .++++.+....+...+.|.+-+.+-... .+.+.|+.+.+.|+.|
T Consensus 102 ~pfgsy~-----------~s~~~a~~na~rl~~eaGa~aVklEdg~------------------e~~~~I~al~~agIpV 152 (281)
T 1oy0_A 102 LPFGSYE-----------AGPTAALAAATRFLKDGGAHAVKLEGGE------------------RVAEQIACLTAAGIPV 152 (281)
T ss_dssp CCTTSST-----------TCHHHHHHHHHHHHHTTCCSEEEEEBSG------------------GGHHHHHHHHHHTCCE
T ss_pred CCCCccc-----------CCHHHHHHHHHHHHHHhCCeEEEECCcH------------------HHHHHHHHHHHCCCCE
Confidence 2222222 1345544433333344666666554331 1233455556678887
Q ss_pred EEEEeeeccCC-----C--CCCC-ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC
Q psy12516 153 RGYISCVVGCP-----Y--EGAV-PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 153 ~~~l~~~~g~~-----~--~~r~-~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~ 214 (327)
.+.+...--+. | .+|. ..+.+.+-++.+.++|++.|.+-- .|. ++.+.+.+.++
T Consensus 153 ~gHiGLtPqsv~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~-----vp~---~~a~~it~~l~ 214 (281)
T 1oy0_A 153 MAHIGFTPQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVMEM-----VPA---ELATQITGKLT 214 (281)
T ss_dssp EEEEECCC--------------CHHHHHHHHHHHHHHHHTCSEEEEES-----CCH---HHHHHHHHHCS
T ss_pred EeeecCCcceecccCCeEEEeCcHHHHHHHHHHHHHHHcCCcEEEEec-----CCH---HHHHHHHHhCC
Confidence 76554310000 0 0122 235677777888899999988743 243 34556666655
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=86.58 E-value=4.7 Score=34.60 Aligned_cols=68 Identities=16% Similarity=0.233 Sum_probs=51.2
Q ss_pred HHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 177 ATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 177 ~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
++.+.++|+|.|.+ |+.....|..+.++++.+++. +..+..-+|+ ...+..|.++|++.|=+++.|+.
T Consensus 94 i~~~~~aGad~I~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~t 161 (229)
T 3q58_A 94 VDALAQAGADIIAF-DASFRSRPVDIDSLLTRIRLH--GLLAMADCST-----VNEGISCHQKGIEFIGTTLSGYT 161 (229)
T ss_dssp HHHHHHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred HHHHHHcCCCEEEE-CccccCChHHHHHHHHHHHHC--CCEEEEecCC-----HHHHHHHHhCCCCEEEecCccCC
Confidence 45678899998855 777667888899999999874 4556665554 45678899999999966666653
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=86.58 E-value=5.9 Score=34.26 Aligned_cols=89 Identities=15% Similarity=0.059 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHcCcCEEEe--cCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 172 NVTRVATALYKMGCYEISL--GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l--~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
.+.+.++.+.+.|+..|.+ -|..|.+.-.++ ++++.+++.++.+|+.... |.+...=+..++.+ +++.+.
T Consensus 152 ~~~~~~~~~~~~g~~eil~t~Id~DGt~~G~d~-~l~~~l~~~~~~ipviasG----Gv~~~~Dl~~l~~~---~~gviv 223 (243)
T 4gj1_A 152 KLMEVLDFYSNKGLKHILCTDISKDGTMQGVNV-RLYKLIHEIFPNICIQASG----GVASLKDLENLKGI---CSGVIV 223 (243)
T ss_dssp BHHHHHHHHHTTTCCEEEEEETTC-----CCCH-HHHHHHHHHCTTSEEEEES----CCCSHHHHHHTTTT---CSEEEE
T ss_pred hHHHHHHHHhhcCCcEEEeeeecccccccCCCH-HHHHHHHHhcCCCCEEEEc----CCCCHHHHHHHHcc---Cchheh
Confidence 4567778888999987766 467887776555 4678888777777776643 33333334444444 333333
Q ss_pred cCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 250 GLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 250 G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
|-.= -.|..+++|++..|+
T Consensus 224 g~Al------~~g~i~l~ea~~~l~ 242 (243)
T 4gj1_A 224 GKAL------LDGVFSVEEGIRCLA 242 (243)
T ss_dssp CHHH------HTTSSCHHHHHHHHC
T ss_pred HHHH------HCCCCCHHHHHHHhh
Confidence 2111 147788888877663
|
| >2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=86.56 E-value=15 Score=31.81 Aligned_cols=211 Identities=12% Similarity=0.052 Sum_probs=103.0
Q ss_pred CeeEEEe--------cCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhccc-Ccchh
Q psy12516 43 DRLAVHC--------HDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQC-GVKEI 112 (327)
Q Consensus 43 ~~~~~H~--------h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~-Gid~i 112 (327)
.+++++. +......+...++.+ ++|.+.||...... + ....+++...+.+.+++. .+...
T Consensus 21 mklg~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~----~------~~~~~~~~~~l~~~gl~~~~~~~~ 90 (290)
T 2zvr_A 21 MKLSLVISTSDAAFDALAFKGDLRKGMELAKRVGYQAVEIAVRDP----S------IVDWNEVKILSEELNLPICAIGTG 90 (290)
T ss_dssp CEEEEEECCCC-------CHHHHHHHHHHHHHHTCSEEEEECSCG----G------GSCHHHHHHHHHHHTCCEEEEECT
T ss_pred ceeEEecccchhhccccccccCHHHHHHHHHHhCCCEEEEcCCCc----c------hhhHHHHHHHHHHcCCeEEEEecc
Confidence 5788887 222234556655555 79999999765421 1 134566666665554443 12110
Q ss_pred hhhhhhhHHHHHHhhc-CC---hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHH---HHHHcCc
Q psy12516 113 AVFASASEMFSKRNIN-CT---IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVAT---ALYKMGC 185 (327)
Q Consensus 113 ~l~~~~sd~~~~~~l~-~s---~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~---~~~~~g~ 185 (327)
.+.. ....++. .+ +++.++.+++.++.|++.|.+... .. ..|. .......+.+..+.+ ++.+...
T Consensus 91 ---~p~~--~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~-~~-~~g~-~~~~~~~~~~~~~~~~l~~l~~~a~ 162 (290)
T 2zvr_A 91 ---QAYL--ADGLSLTHPNDEIRKKAIERVVKHTEVAGMFGALVII-GL-VRGR-REGRSYEETEELFIESMKRLLELTE 162 (290)
T ss_dssp ---HHHH--TTCCCTTCSSHHHHHHHHHHHHHHHHHHHHHTCEEEE-SG-GGCC-CTTSCHHHHHHHHHHHHHHHHHHCS
T ss_pred ---Cccc--cCCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-ec-CCCC-CCCcCHHHHHHHHHHHHHHHHHHhc
Confidence 0000 0000111 01 234578899999999999998643 11 0121 111122233333333 3333322
Q ss_pred -CEEEecCC-----CCccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCC
Q psy12516 186 -YEISLGDT-----IGVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPY 256 (327)
Q Consensus 186 -~~i~l~Dt-----~G~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~ 256 (327)
=.+.+--. .-..+|.++.+++..+.. |.+.+.+ |.+. .|......+..+..=+.+|+..=. +.+
T Consensus 163 ~v~l~lEn~~~~~~~~~~~~~~~~~l~~~~~~--~~vgl~~D~~h~~~-~g~d~~~~l~~~~~~i~~vHl~D~--~r~-- 235 (290)
T 2zvr_A 163 HAKFVIEPLNRYETDFINTIDDALRILRKINS--NRVGILADTFHMNI-EEVNIPESLKRAGEKLYHFHVADS--NRW-- 235 (290)
T ss_dssp SCCEEECCCCTTTCSSCCSHHHHHHHHHHHCC--TTEEEEEEHHHHHH-HCSSHHHHHHHHGGGEEEEEECCT--TSS--
T ss_pred cCEEEEEeCCCcCccccCCHHHHHHHHHHcCC--CCEEEEEehhHhhh-cCCCHHHHHHHhhccEEEEEEcCC--CCC--
Confidence 23444322 223567777777766531 3333333 2221 122333344433222344444332 222
Q ss_pred CCCCCCCccHHHHHHHHHhCCCC
Q psy12516 257 ARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 257 ~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
.+| .|..+.+.++..|++.||+
T Consensus 236 ~~G-~G~id~~~~~~~L~~~gy~ 257 (290)
T 2zvr_A 236 APG-CGHFDFRSVFNTLKEIGYN 257 (290)
T ss_dssp STT-SSCCCHHHHHHHHHHTTCC
T ss_pred CCC-CcccCHHHHHHHHHHcCCC
Confidence 244 6899999999999998876
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=86.53 E-value=11 Score=34.46 Aligned_cols=124 Identities=20% Similarity=0.176 Sum_probs=77.4
Q ss_pred cCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc---C-----------------CCC-----C-----CCChH------
Q psy12516 128 NCTIEESLERFSEVVSTALTNGIRVRGYISCVVG---C-----------------PYE-----G-----AVPPH------ 171 (327)
Q Consensus 128 ~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g---~-----------------~~~-----~-----r~~~e------ 171 (327)
+...++.++..+++++.+|+.|-++...|... | . |-. + ..+.+
T Consensus 73 ~i~~d~~i~~~~~~~~~vh~~G~~i~~Ql~H~-Gr~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii 151 (349)
T 3hgj_A 73 GIWSEDHLPGLKELARRIREAGAVPGIQLAHA-GRKAGTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERIL 151 (349)
T ss_dssp BCSSGGGHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHhCCCeEEEEeccC-CccccccccccccccCCCcccCCCcccccCCCCCCccCCHHHHHHHH
Confidence 44445568999999999999999887766541 1 0 000 0 12223
Q ss_pred -HHHHHHHHHHHcCcCEEEecCCCCcc----------------------CHHHHHHHHHHHHHhcC-CCeEEEeecCC--
Q psy12516 172 -NVTRVATALYKMGCYEISLGDTIGVG----------------------TPGTMRLMLEDVLTVIP-ADRLAVHCHDT-- 225 (327)
Q Consensus 172 -~l~~~~~~~~~~g~~~i~l~Dt~G~~----------------------~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~-- 225 (327)
.+.+.++.+.++|.|.|.|--..|.+ .++.+.++++.+|+.++ +.+|++-.+-+
T Consensus 152 ~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~ 231 (349)
T 3hgj_A 152 QAFVEGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDW 231 (349)
T ss_dssp HHHHHHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCC
T ss_pred HHHHHHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccc
Confidence 34445566778899987774333322 13456788999999985 56788766532
Q ss_pred --cCcHHHH----HHHHHHhcCceeeeccccCC
Q psy12516 226 --YGQALAN----ILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 226 --~g~a~an----~l~a~~~G~~~vd~s~~G~G 252 (327)
-|+.... +....++|+++|+.+..+.-
T Consensus 232 ~~~g~~~~~~~~la~~L~~~Gvd~i~vs~g~~~ 264 (349)
T 3hgj_A 232 GEGGWSLEDTLAFARRLKELGVDLLDCSSGGVV 264 (349)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred cCCCCCHHHHHHHHHHHHHcCCCEEEEecCCcC
Confidence 2433333 33445789999999875543
|
| >3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* | Back alignment and structure |
|---|
Probab=86.50 E-value=11 Score=33.51 Aligned_cols=116 Identities=14% Similarity=0.143 Sum_probs=61.0
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+...+.+. ...+.+|..+-++.+++.+......|.+. .+..
T Consensus 23 g~iD~~~l~~lv~-~li~~Gv~gl~v~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g~rvpviaG---------vg~~ 87 (301)
T 3m5v_A 23 GKVDEQSYARLIK-RQIENGIDAVVPVGTTGES-----ATLTHEEHRTCIEIAVETCKGTKVKVLAG---------AGSN 87 (301)
T ss_dssp TEECHHHHHHHHH-HHHHTTCCEEECSSTTTTG-----GGSCHHHHHHHHHHHHHHHTTSSCEEEEE---------CCCS
T ss_pred CCCCHHHHHHHHH-HHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCCCCCeEEEe---------CCCC
Confidence 5566555544333 3456778777666555542 22344443333444444432212444321 1124
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec-CCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.++..++++.+.+.|+|.+.+. -..-..+++.+.+.++.+.+..+ +||.+
T Consensus 88 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~-lPiil 139 (301)
T 3m5v_A 88 ATHEAVGLAKFAKEHGADGILSVAPYYNKPTQQGLYEHYKAIAQSVD-IPVLL 139 (301)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCS-SCEEE
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCC-CCEEE
Confidence 56677777777777777754433 33334566677777777766653 34443
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.43 E-value=18 Score=32.54 Aligned_cols=178 Identities=14% Similarity=0.150 Sum_probs=91.9
Q ss_pred HHHHHHHHcCcCEEEecC-Cc--ccc-------CHHHHHH---HHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCC
Q psy12516 2 KVASALYKMGCYEISLGD-TI--GVG-------TPGTMRL---MLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGI 68 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~--G~~-------~p~~~~~---~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~ 68 (327)
+.++++.+.|+|.|-+.= ++ |.. ..+++++ .++.+++.. ++++.+- ++- ..-+.+|+++|+
T Consensus 53 ~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~-~vpISID---T~~--~~Va~aAl~aGa 126 (314)
T 3tr9_A 53 RTAEKMVDEGADILDIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRF-PQLISVD---TSR--PRVMREAVNTGA 126 (314)
T ss_dssp HHHHHHHHTTCSEEEEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHC-CSEEEEE---CSC--HHHHHHHHHHTC
T ss_pred HHHHHHHHCCCCEEEECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhC-CCeEEEe---CCC--HHHHHHHHHcCC
Confidence 567889999999998873 33 322 1233443 445555544 4777664 443 234577888999
Q ss_pred cEEEecccCCCC-----------CCCCCC-ccCCCc----------HHHHHHHhhh---hhcccCcchhhh-hhhhhHHH
Q psy12516 69 SVFDSSIAGLGG-----------CPYARG-ASGNVA----------TEDLVYMLEG---KSMQCGVKEIAV-FASASEMF 122 (327)
Q Consensus 69 ~~id~~~~glg~-----------~p~~~~-~~gn~~----------~e~v~~~l~~---~~~~~Gid~i~l-~~~~sd~~ 122 (327)
+.|.. ++|... ||+--. ..|.+. .+++...+.+ .+.+.|++.-++ +++. +
T Consensus 127 ~iIND-Vsg~~~~~m~~v~a~~g~~vVlMh~~G~P~tmq~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~IilDPG---~ 202 (314)
T 3tr9_A 127 DMIND-QRALQLDDALTTVSALKTPVCLMHFPSETRKPGSTTHFYFLQSVKKELQESIQRCKKAGISEDRIIIDPG---F 202 (314)
T ss_dssp CEEEE-TTTTCSTTHHHHHHHHTCCEEEECCCCTTCCTTSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECC---C
T ss_pred CEEEE-CCCCCchHHHHHHHHhCCeEEEECCCCCCcccccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEEeCC---C
Confidence 98864 333321 222100 012211 2344444443 456778875444 3442 1
Q ss_pred HHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEee-ec-----cCCCCCCCChHHHHHHHHHHHHcCcCEEEecC
Q psy12516 123 SKRNINCTIEESLERFSEVVSTALTNGIRVRGYISC-VV-----GCPYEGAVPPHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 123 ~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~-~~-----g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
..-.++++.++.++-++.+ +..++.|+.+-.-++. .| +.|... ...--..+.-.+...|++.++.-|
T Consensus 203 G~~~F~Kt~~~n~~lL~~l-~~l~~lg~PvL~G~SRKsfig~~~~~~~~~--R~~~t~a~~~~a~~~Ga~IvRvHD 275 (314)
T 3tr9_A 203 GQGNYGKNVSENFYLLNKL-PEFVAMGLPVLSGWSRKSMIGDVLNQPPEN--RLFGSIAADVLAVYHGASIIRTHD 275 (314)
T ss_dssp CSGGGCCCHHHHHHHHHTT-HHHHTTSSCBEECCTTCHHHHHHHTCCGGG--CHHHHHHHHHHHHHTTCSEEEESC
T ss_pred CchhhcCCHHHHHHHHHHH-HHHhcCCCCEEEEechhhhhhhhcCCChHH--hHHHHHHHHHHHHHcCCcEEEeCC
Confidence 0001667777766655544 3346778887543321 01 111000 111112223455678999999988
|
| >3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A | Back alignment and structure |
|---|
Probab=86.42 E-value=12 Score=33.12 Aligned_cols=115 Identities=17% Similarity=0.181 Sum_probs=60.1
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+...+.+. ...+.+|..+-++.+++.+.. ...|.+. .+..
T Consensus 17 g~iD~~~l~~lv~-~li~~Gv~gl~~~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-r~pviaG---------vg~~ 80 (291)
T 3tak_A 17 GGVDWKSLEKLVE-WHIEQGTNSIVAVGTTGEA-----STLSMEEHTQVIKEIIRVANK-RIPIIAG---------TGAN 80 (291)
T ss_dssp SCBCHHHHHHHHH-HHHHHTCCEEEESSTTTTG-----GGSCHHHHHHHHHHHHHHHTT-SSCEEEE---------CCCS
T ss_pred CCcCHHHHHHHHH-HHHHCCCCEEEECcccccc-----ccCCHHHHHHHHHHHHHHhCC-CCeEEEe---------CCCC
Confidence 5666665544433 3456777776666555542 223444444444444444332 2333211 1124
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec-CCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.++..++++.+.+.|+|.+.+. -..-..+++.+.+.++.+.+..+ +|+.+
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~-lPiil 132 (291)
T 3tak_A 81 STREAIELTKAAKDLGADAALLVTPYYNKPTQEGLYQHYKAIAEAVE-LPLIL 132 (291)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC-SCEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 55667777777777777754433 33334566667777777666653 34443
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=86.31 E-value=18 Score=32.46 Aligned_cols=66 Identities=12% Similarity=0.005 Sum_probs=44.7
Q ss_pred HHHHHHHHcCcCEEEecCCc---c--ccCHHHHHHHHHHHHhhcCCCeeEE-EecCccchHHHHHHHHHHcCCc
Q psy12516 2 KVASALYKMGCYEISLGDTI---G--VGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFGIS 69 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~---G--~~~p~~~~~~~~~~~~~~~~~~~~~-H~h~~~g~~~~~~~~a~~aG~~ 69 (327)
+++++..+.|+|.|.+.-.+ | .-+|.+..++++.+++.+ ++++.+ -+ .+...-..-+.+|+++|++
T Consensus 78 ~~A~~~v~~GAdiIDIg~~StrP~~~~vs~eee~~vV~~v~~~~-~vplsI~DT-~~~~~~~~V~eaal~aga~ 149 (310)
T 2h9a_B 78 AWAKKCVEYGADIVALRLVSAHPDGQNRSGAELAEVCKAVADAI-DVPLMIIGC-GVEEKDAEIFPVIGEALSG 149 (310)
T ss_dssp HHHHHHHHTTCSEEEEECGGGCTTTTCCCHHHHHHHHHHHHHHC-SSCEEEECC-SCHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCCcEEEEeCccCCCCCCCCCHHHHHHHHHHHHHhC-CceEEEECC-CCCCCCHHHHHHHHHhCCC
Confidence 57788889999998887632 2 246777788888888876 477765 33 1112234555677788876
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=86.27 E-value=15 Score=31.51 Aligned_cols=188 Identities=12% Similarity=0.156 Sum_probs=100.8
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l 100 (327)
...++.++.++++..++.-. ..+.+ +-..+..+. .++ .++.. -+.+ |+ | .|..+++.-+ .-
T Consensus 24 p~~t~~~i~~lc~eA~~~~~-~aVcV-----~p~~v~~a~-~l~~~~v~v-~tVi-gF---P-----~G~~~~~~K~-~E 85 (231)
T 3ndo_A 24 PEATPSDVTALVDEAADLGV-FAVCV-----SPPLVSVAA-GVAPSGLAI-AAVA-GF---P-----SGKHVPGIKA-TE 85 (231)
T ss_dssp TTCCHHHHHHHHHHHHHHTC-SEEEE-----CGGGHHHHH-HHCCTTCEE-EEEE-ST---T-----TCCSCHHHHH-HH
T ss_pred CCCCHHHHHHHHHHHHHhCC-cEEEE-----CHHHHHHHH-HhcCCCCeE-EEEe-cC---C-----CCCCcHHHHH-HH
Confidence 45678888888877766421 22222 222233333 332 22222 2222 21 1 2444444322 12
Q ss_pred hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC----ChHHHHHH
Q psy12516 101 EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV----PPHNVTRV 176 (327)
Q Consensus 101 ~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~----~~e~l~~~ 176 (327)
-+.+++.|.|.+.+........ ....++..+.+..+.+.++ |..+.+.+.. ... +++.+.+.
T Consensus 86 ~~~Ai~~GAdEIDmVinig~lk-----~g~~~~v~~ei~~v~~a~~--~~~lKvIiEt-------~~L~~~~t~eei~~a 151 (231)
T 3ndo_A 86 AELAVAAGATEIDMVIDVGAAL-----AGDLDAVSADITAVRKAVR--AATLKVIVES-------AALLEFSGEPLLADV 151 (231)
T ss_dssp HHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTT--TSEEEEECCH-------HHHHHHTCHHHHHHH
T ss_pred HHHHHHcCCCEEEEEeehHhhh-----cccHHHHHHHHHHHHHHcc--CCceEEEEEC-------cccCCCCCHHHHHHH
Confidence 2456778888776654443221 1223444566666666664 5554433332 134 88999999
Q ss_pred HHHHHHcCcCEEEecC--C-CCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeec
Q psy12516 177 ATALYKMGCYEISLGD--T-IGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 177 ~~~~~~~g~~~i~l~D--t-~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s 247 (327)
++...++|+|-|--.- + .|-.++++++.+-..+. + ++.+-.---.. ....+++-+++|++++=+|
T Consensus 152 ~~ia~~aGADfVKTSTGf~~~~gAt~edv~lm~~~v~---~--~v~VKaaGGIr-t~~~a~~~i~aGa~RiGtS 219 (231)
T 3ndo_A 152 CRVARDAGADFVKTSTGFHPSGGASVQAVEIMARTVG---E--RLGVKASGGIR-TAEQAAAMLDAGATRLGLS 219 (231)
T ss_dssp HHHHHHTTCSEEECCCSCCTTCSCCHHHHHHHHHHHT---T--TSEEEEESSCC-SHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHCcCEEEcCCCCCCCCCCCHHHHHHHHHHhC---C--CceEEEeCCCC-CHHHHHHHHHhcchhcccc
Confidence 9999999999876543 1 35677877766544443 2 33333221111 1267788889999987654
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=86.25 E-value=13 Score=31.16 Aligned_cols=146 Identities=14% Similarity=0.067 Sum_probs=0.0
Q ss_pred CHHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 1 ~~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
+++++++.+.|++.|.+.. +-....+.++.+++ ++..++....-+. .....|+++|++.+.+.-.
T Consensus 28 ~~~~~~l~~gGv~~iel~~-----k~~~~~~~i~~~~~--~~~~~gag~vl~~----d~~~~A~~~GAd~v~~~~~---- 92 (207)
T 2yw3_A 28 LGLARVLEEEGVGALEITL-----RTEKGLEALKALRK--SGLLLGAGTVRSP----KEAEAALEAGAAFLVSPGL---- 92 (207)
T ss_dssp HHHHHHHHHTTCCEEEEEC-----SSTHHHHHHHHHTT--SSCEEEEESCCSH----HHHHHHHHHTCSEEEESSC----
T ss_pred HHHHHHHHHcCCCEEEEeC-----CChHHHHHHHHHhC--CCCEEEeCeEeeH----HHHHHHHHcCCCEEEcCCC----
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVV 160 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~ 160 (327)
..++++.+++.|..........
T Consensus 93 ---------------------------------------------------------d~~v~~~~~~~g~~~i~G~~t~- 114 (207)
T 2yw3_A 93 ---------------------------------------------------------LEEVAALAQARGVPYLPGVLTP- 114 (207)
T ss_dssp ---------------------------------------------------------CHHHHHHHHHHTCCEEEEECSH-
T ss_pred ---------------------------------------------------------CHHHHHHHHHhCCCEEecCCCH-
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHH---HHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMR---LMLEDVLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~---~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
.-+.++.+.|+|.|.+ .|.+.. +.++.+++.+|.+|+.. .-|....|.-+.+
T Consensus 115 --------------~e~~~A~~~Gad~v~~-------fpa~~~gG~~~lk~l~~~~~~ipvva----iGGI~~~n~~~~l 169 (207)
T 2yw3_A 115 --------------TEVERALALGLSALKF-------FPAEPFQGVRVLRAYAEVFPEVRFLP----TGGIKEEHLPHYA 169 (207)
T ss_dssp --------------HHHHHHHHTTCCEEEE-------TTTTTTTHHHHHHHHHHHCTTCEEEE----BSSCCGGGHHHHH
T ss_pred --------------HHHHHHHHCCCCEEEE-------ecCccccCHHHHHHHHhhCCCCcEEE----eCCCCHHHHHHHH
Q ss_pred HhcCcee
Q psy12516 238 EFGISVF 244 (327)
Q Consensus 238 ~~G~~~v 244 (327)
++|++.+
T Consensus 170 ~aGa~~v 176 (207)
T 2yw3_A 170 ALPNLLA 176 (207)
T ss_dssp TCSSBSC
T ss_pred hCCCcEE
|
| >3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=86.22 E-value=4.6 Score=34.85 Aligned_cols=19 Identities=16% Similarity=0.141 Sum_probs=16.7
Q ss_pred CCCccHHHHHHHHHhCCCC
Q psy12516 261 SGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~~g~~ 279 (327)
.|..+...++..|++.||+
T Consensus 226 ~G~id~~~~~~~L~~~gy~ 244 (281)
T 3u0h_A 226 DGRIPLVPFLRGLYLAGYR 244 (281)
T ss_dssp SSSSCHHHHHHHHHHHTCC
T ss_pred CcCcCHHHHHHHHHHcCCC
Confidence 6899999999999987765
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=86.18 E-value=6.2 Score=34.05 Aligned_cols=108 Identities=11% Similarity=0.162 Sum_probs=68.3
Q ss_pred CCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC--CCeEE----Eee
Q psy12516 149 GIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP--ADRLA----VHC 222 (327)
Q Consensus 149 Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~--~~~l~----~H~ 222 (327)
++++...+. .|.. ..+.+....-++.+.+.|+|.|-+.=-.|.+.- .+.+-+..+++..+ +.++- .-.
T Consensus 71 ~v~v~tvig----FP~G-~~~~~~k~~e~~~Av~~GAdEID~vinig~~~~-~v~~ei~~v~~a~~~~g~~lKvIlEt~~ 144 (234)
T 1n7k_A 71 GVKLCSVIG----FPLG-QAPLEVKLVEAQTVLEAGATELDVVPHLSLGPE-AVYREVSGIVKLAKSYGAVVKVILEAPL 144 (234)
T ss_dssp TCCEEEEES----TTTC-CSCHHHHHHHHHHHHHHTCCEEEECCCGGGCHH-HHHHHHHHHHHHHHHTTCEEEEECCGGG
T ss_pred CceEEEEeC----CCCC-CCcHHHHHHHHHHHHHcCCCEEEEeccchHHHH-HHHHHHHHHHHHHhhcCCeEEEEEeccC
Confidence 677765543 3433 356666666678888999999988777777655 77777887777542 23432 111
Q ss_pred cCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHH
Q psy12516 223 HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVY 271 (327)
Q Consensus 223 Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~ 271 (327)
-++ -.=.-.+..|+++|+|+|-+|-. .+ .+|+++.|++-.
T Consensus 145 L~~-e~i~~a~ria~eaGADfVKTsTG-~~-------~~~gAt~~dv~l 184 (234)
T 1n7k_A 145 WDD-KTLSLLVDSSRRAGADIVKTSTG-VY-------TKGGDPVTVFRL 184 (234)
T ss_dssp SCH-HHHHHHHHHHHHTTCSEEESCCS-SS-------CCCCSHHHHHHH
T ss_pred CCH-HHHHHHHHHHHHhCCCEEEeCCC-CC-------CCCCCCHHHHHH
Confidence 122 12234566688999999998753 22 125677777554
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=86.08 E-value=2 Score=41.25 Aligned_cols=72 Identities=13% Similarity=0.086 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
...+.++.+.++|++.|.+.=+.| .|....+.++.+++.+|+.++.+- .++....+..+.++|++.|+++..
T Consensus 237 ~~~~~a~~l~~aGvd~v~i~~~~G--~~~~~~e~i~~i~~~~p~~pvi~g----~~~t~e~a~~l~~~G~d~I~v~~~ 308 (494)
T 1vrd_A 237 ETMERVEKLVKAGVDVIVIDTAHG--HSRRVIETLEMIKADYPDLPVVAG----NVATPEGTEALIKAGADAVKVGVG 308 (494)
T ss_dssp THHHHHHHHHHTTCSEEEECCSCC--SSHHHHHHHHHHHHHCTTSCEEEE----EECSHHHHHHHHHTTCSEEEECSS
T ss_pred hHHHHHHHHHHhCCCEEEEEecCC--chHHHHHHHHHHHHHCCCceEEeC----CcCCHHHHHHHHHcCCCEEEEcCC
Confidence 445678889999999998844445 566778889999999987787662 244456668888999999998654
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=85.97 E-value=1.5 Score=37.69 Aligned_cols=100 Identities=12% Similarity=0.070 Sum_probs=63.2
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHH--HHHHHHHHHHhc-CCCeEEEeecCC-cCcHHHHHHHHHHhcCce
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGT--MRLMLEDVLTVI-PADRLAVHCHDT-YGQALANILTAMEFGISV 243 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~--~~~~~~~~~~~~-~~~~l~~H~Hn~-~g~a~an~l~a~~~G~~~ 243 (327)
.|...+.+-.+.+.+.|+|.+-+-=+-|...|.- =.+.++.+|+.+ ++.++.+|.+-+ .+.- .-.+.++|+++
T Consensus 14 ~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~---i~~~~~aGad~ 90 (228)
T 3ovp_A 14 SDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQW---VKPMAVAGANQ 90 (228)
T ss_dssp SCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGG---HHHHHHHTCSE
T ss_pred CCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHH---HHHHHHcCCCE
Confidence 5667788889999999999555533335443211 123577778776 777899998853 3322 23467899999
Q ss_pred eeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCC
Q psy12516 244 FDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA 282 (327)
Q Consensus 244 vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~ 282 (327)
|..- +| ++. .+..++..+++.|...++
T Consensus 91 itvH----~E-------a~~-~~~~~i~~i~~~G~k~gv 117 (228)
T 3ovp_A 91 YTFH----LE-------ATE-NPGALIKDIRENGMKVGL 117 (228)
T ss_dssp EEEE----GG-------GCS-CHHHHHHHHHHTTCEEEE
T ss_pred EEEc----cC-------Cch-hHHHHHHHHHHcCCCEEE
Confidence 8662 23 222 456777777776655443
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=85.87 E-value=5.9 Score=34.49 Aligned_cols=219 Identities=14% Similarity=0.103 Sum_probs=105.5
Q ss_pred cCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhh-
Q psy12516 40 IPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFAS- 117 (327)
Q Consensus 40 ~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~- 117 (327)
-|..++++|+.- ...+...+..+ ++|.+.||....... ++ .....+++...+.+ .|+....+...
T Consensus 8 ~~~~~lg~~t~~--~~~l~~~l~~~~~~G~~~vEl~~~~~~--~~-----~~~~~~~~~~~l~~----~gl~~~~~~~~~ 74 (290)
T 3tva_A 8 KPYWPIGVFTSV--DAGLGVHLEVAQDLKVPTVQVHAPHPH--TR-----TREHAQAFRAKCDA----AGIQVTVIFGGF 74 (290)
T ss_dssp -CCSCEEEEEES--SSSSSBCHHHHHHTTCSEEEEECCCGG--GC-----SHHHHHHHHHHHHH----TTCEEEEEECCC
T ss_pred ccceeEEEEecC--CCCHHHHHHHHHHcCCCEEEecCCCCC--cC-----CHHHHHHHHHHHHH----cCCEEEEEeecc
Confidence 344678988844 34444555555 799999997764321 10 01123344444444 44432222100
Q ss_pred ----hhHH-HHHHhhc----CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC----ChHHHHHHHHHHHHcC
Q psy12516 118 ----ASEM-FSKRNIN----CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV----PPHNVTRVATALYKMG 184 (327)
Q Consensus 118 ----~sd~-~~~~~l~----~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~----~~e~l~~~~~~~~~~g 184 (327)
..+. ..+..++ ..+++.++.+++.++.|++.|.+....... + .|....- -.+.+.++++.+.+.|
T Consensus 75 ~g~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G-~-~~~~~~~~~~~~~~~l~~l~~~a~~~G 152 (290)
T 3tva_A 75 DGESYADIPTTARTVGLVPLETRASRVAEMKEISDFASWVGCPAIGLHIG-F-VPESSSPDYSELVRVTQDLLTHAANHG 152 (290)
T ss_dssp TTCCCSSHHHHHHHSSSCSTTTHHHHHHHHHHHHHHHHHHTCSEEEECCC-C-CCCTTSHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCcccccccccccccCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEcCC-C-CcccchHHHHHHHHHHHHHHHHHHHcC
Confidence 0000 0111111 123556888999999999999986432111 0 1111000 1123445555556667
Q ss_pred cCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCceeeeccc--c----CC-C-
Q psy12516 185 CYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSSIA--G----LG-G- 253 (327)
Q Consensus 185 ~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~~vd~s~~--G----~G-~- 253 (327)
+. +.+--.. -+|.++.+++..+- .|.+.+.+ |.+..-|......+..+..=+.+|+..=. . -| .
T Consensus 153 v~-l~lE~~~--~~~~~~~~l~~~~~--~~~~g~~~D~~h~~~~g~~d~~~~l~~~~~~i~~vHl~D~~~~~~~~~g~~~ 227 (290)
T 3tva_A 153 QA-VHLETGQ--ESADHLLEFIEDVN--RPNLGINFDPANMILYGTGNPIEALRKVARYVRSIHCKDALWAPVNERGKSW 227 (290)
T ss_dssp CE-EEEECCS--SCHHHHHHHHHHHC--CTTEEEEECHHHHHHTTCSCHHHHHHHHGGGEEEEEECEEECCCGGGBTTBC
T ss_pred CE-EEEecCC--CCHHHHHHHHHhcC--CCCEEEEeccHHHHHhCCCCHHHHHHHHHhhheEEEeccccCCCcccccccc
Confidence 74 3443332 46777777776653 23322332 33321123333334333222333332211 0 01 0
Q ss_pred -CCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 254 -CPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 254 -~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
....+| .|..+...++..|++.||+
T Consensus 228 ~~~~~~G-~G~id~~~~~~~L~~~gy~ 253 (290)
T 3tva_A 228 GQEVALG-TGDVGMEAYLTTLWEIGYR 253 (290)
T ss_dssp CEEESTT-SSSSCHHHHHHHHHHTTCC
T ss_pred ccccCCC-CceeCHHHHHHHHHHcCCC
Confidence 011233 6899999999999997776
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=85.83 E-value=1.7 Score=37.50 Aligned_cols=70 Identities=16% Similarity=0.188 Sum_probs=52.3
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+.++++.++|+|.|. .|++...+|..+.++++.+++. +..+..-.|+ ...+..+.++|++.|-+++.|+.
T Consensus 92 ~~i~~~~~aGad~I~-l~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~t 161 (229)
T 3q58_A 92 QDVDALAQAGADIIA-FDASFRSRPVDIDSLLTRIRLH--GLLAMADCST-----VNEGISCHQKGIEFIGTTLSGYT 161 (229)
T ss_dssp HHHHHHHHHTCSEEE-EECCSSCCSSCHHHHHHHHHHT--TCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred HHHHHHHHcCCCEEE-ECccccCChHHHHHHHHHHHHC--CCEEEEecCC-----HHHHHHHHhCCCCEEEecCccCC
Confidence 356788999999884 4777777888888999988874 3555555554 45667888999999976666554
|
| >1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A* | Back alignment and structure |
|---|
Probab=85.73 E-value=18 Score=31.89 Aligned_cols=151 Identities=16% Similarity=0.118 Sum_probs=86.6
Q ss_pred HHHHHHHcCcCEEEecCCcc----------ccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 3 VASALYKMGCYEISLGDTIG----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G----------~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
.|+.+.++|+|.|...|+.| ..|..++-..++.+.+..+... -..|
T Consensus 29 sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~~~~~------------------------vvaD 84 (275)
T 1o66_A 29 FAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAM------------------------IVSD 84 (275)
T ss_dssp HHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSE------------------------EEEE
T ss_pred HHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhCCCCe------------------------EEEE
Confidence 36778889999999988764 4567788777888887765211 1244
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
.-+++.+ .++++.+....+. ++.|.+-+.+-... .+.+.|+.+.+.|+.|
T Consensus 85 ~pfgsy~-----------~s~~~a~~na~rl-~kaGa~aVklEdg~------------------e~~~~I~al~~agIpV 134 (275)
T 1o66_A 85 LPFGAYQ-----------QSKEQAFAAAAEL-MAAGAHMVKLEGGV------------------WMAETTEFLQMRGIPV 134 (275)
T ss_dssp CCTTSSS-----------SCHHHHHHHHHHH-HHTTCSEEEEECSG------------------GGHHHHHHHHHTTCCE
T ss_pred CCCCCcc-----------CCHHHHHHHHHHH-HHcCCcEEEECCcH------------------HHHHHHHHHHHcCCCe
Confidence 2222222 2345555433332 23666666554331 1334466667789888
Q ss_pred EEEEeeeccCC-----C--CCCC-ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCC
Q psy12516 153 RGYISCVVGCP-----Y--EGAV-PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA 215 (327)
Q Consensus 153 ~~~l~~~~g~~-----~--~~r~-~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~ 215 (327)
.+.+...--+. | .+|. ..+.+.+-++.+.++|++.|.+-- .|. ++.+.+.+.++-
T Consensus 135 ~gHiGLtPQs~~~~ggf~v~grt~~a~~~i~rA~a~~eAGA~~ivlE~-----vp~---~~a~~it~~l~i 197 (275)
T 1o66_A 135 CAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLMEC-----VLA---ELAKKVTETVSC 197 (275)
T ss_dssp EEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEES-----CCH---HHHHHHHHHCSS
T ss_pred EeeeccCceeecccCCeEEEeChHHHHHHHHHHHHHHHcCCcEEEEec-----CCH---HHHHHHHHhCCC
Confidence 76665310000 0 1122 236777788889999999988743 243 345566666653
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=85.71 E-value=20 Score=32.30 Aligned_cols=67 Identities=15% Similarity=0.117 Sum_probs=40.7
Q ss_pred HHHHHHHHcCc-CEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecC-ccchHHHHHHHHHHcCCcEEEec
Q psy12516 2 KVASALYKMGC-YEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTAMEFGISVFDSS 74 (327)
Q Consensus 2 ~~~~~~~~~g~-~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~-~~g~~~~~~~~a~~aG~~~id~~ 74 (327)
+++..+.++|. ..|. .+..+|..+++.++.+++.. +.++++...- +... ...+..+.++|++.|+..
T Consensus 27 ~la~av~~aG~lG~i~----~~~~~~~~~~~~i~~i~~~~-~~p~gvnl~~~~~~~-~~~~~~a~~~g~d~V~~~ 95 (332)
T 2z6i_A 27 DLAGAVSKAGGLGIIG----GGNAPKEVVKANIDKIKSLT-DKPFGVNIMLLSPFV-EDIVDLVIEEGVKVVTTG 95 (332)
T ss_dssp HHHHHHHHHTSBEEEE----CTTCCHHHHHHHHHHHHHHC-CSCEEEEECTTSTTH-HHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhCCCcEEeC----CCCCCHHHHHHHHHHHHHhc-CCCEEEEecCCCCCH-HHHHHHHHHCCCCEEEEC
Confidence 45666777785 3443 25678888888888888764 2455555432 2221 123344557888888844
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=85.55 E-value=5.2 Score=39.85 Aligned_cols=117 Identities=13% Similarity=0.104 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccC---------CC-----CCCCCh------------HHHHHHHHHHHHcC
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGC---------PY-----EGAVPP------------HNVTRVATALYKMG 184 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~---------~~-----~~r~~~------------e~l~~~~~~~~~~g 184 (327)
.++.++..+++++..|+.|-++.+.|... |. |- .....| +.+.+.++.+.++|
T Consensus 76 ~~~~~~~~~~~~~~vh~~g~~i~~Ql~h~-Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aG 154 (671)
T 1ps9_A 76 DASQIPHHRTITEAVHQEGGKIALQILHT-GRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAG 154 (671)
T ss_dssp SGGGHHHHHHHHHHHHHTTCCEEEEECCC-GGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHhcCCEEEEEeccC-CcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcC
Confidence 34457888999999999998877766542 10 00 001122 45666777788899
Q ss_pred cCEEEecC-------------------CCCcc---CHHHHHHHHHHHHHhcC-CCeEEEeec--C--CcCc----HHHHH
Q psy12516 185 CYEISLGD-------------------TIGVG---TPGTMRLMLEDVLTVIP-ADRLAVHCH--D--TYGQ----ALANI 233 (327)
Q Consensus 185 ~~~i~l~D-------------------t~G~~---~P~~~~~~~~~~~~~~~-~~~l~~H~H--n--~~g~----a~an~ 233 (327)
.|.|.|-- ..|.. .++.+.++++.+|+.++ +.++.+-.- + ..|+ +...+
T Consensus 155 fd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a 234 (671)
T 1ps9_A 155 YDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELA 234 (671)
T ss_dssp CSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHH
T ss_pred CCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHH
Confidence 99888732 23322 24567888999999884 566655222 1 1133 23334
Q ss_pred HHHHHhcCceeeecc
Q psy12516 234 LTAMEFGISVFDSSI 248 (327)
Q Consensus 234 l~a~~~G~~~vd~s~ 248 (327)
...-++|+++++.+.
T Consensus 235 ~~l~~~g~d~i~v~~ 249 (671)
T 1ps9_A 235 QAIEAAGATIINTGI 249 (671)
T ss_dssp HHHHHHTCSEEEEEE
T ss_pred HHHHhcCCCEEEcCC
Confidence 445578999998764
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=85.53 E-value=2.5 Score=40.60 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=51.4
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
+.++.+.++|+|.|.+.=+.| .+....+.++++++.+|+.++..- .+.....+..+.++|++.|.++.
T Consensus 240 ~~a~~l~~aGvd~v~i~~~~G--~~~~~~e~i~~i~~~~p~~pvi~g----~~~t~e~a~~l~~~G~d~I~v~~ 307 (494)
T 1vrd_A 240 ERVEKLVKAGVDVIVIDTAHG--HSRRVIETLEMIKADYPDLPVVAG----NVATPEGTEALIKAGADAVKVGV 307 (494)
T ss_dssp HHHHHHHHTTCSEEEECCSCC--SSHHHHHHHHHHHHHCTTSCEEEE----EECSHHHHHHHHHTTCSEEEECS
T ss_pred HHHHHHHHhCCCEEEEEecCC--chHHHHHHHHHHHHHCCCceEEeC----CcCCHHHHHHHHHcCCCEEEEcC
Confidence 467788999999998843335 556677889999999877777663 34455666788899999999854
|
| >3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A | Back alignment and structure |
|---|
Probab=85.46 E-value=16 Score=31.08 Aligned_cols=211 Identities=12% Similarity=0.093 Sum_probs=98.3
Q ss_pred CeeEEEecCc-cchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccC-cchhhhhhhhh
Q psy12516 43 DRLAVHCHDT-YGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCG-VKEIAVFASAS 119 (327)
Q Consensus 43 ~~~~~H~h~~-~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~G-id~i~l~~~~s 119 (327)
.++++|.-.. ....+...+..+ ++|.+.||.....+. ....+++...+++.+++.. +.....+....
T Consensus 5 ~~lg~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~----------~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d 74 (275)
T 3qc0_A 5 EGLSINLATIREQCGFAEAVDICLKHGITAIAPWRDQVA----------AIGLGEAGRIVRANGLKLTGLCRGGFFPAPD 74 (275)
T ss_dssp TTEEEEGGGGTTTCCHHHHHHHHHHTTCCEEECBHHHHH----------HHCHHHHHHHHHHHTCEESCEEEEECCCCSS
T ss_pred ccceeeeeeccCCCCHHHHHHHHHHcCCCEEEecccccc----------ccCHHHHHHHHHHcCCceEEeecCCCcCCCC
Confidence 3566666655 344555555555 688888885432110 1234444444444443321 00000000000
Q ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCC-------hHHHHHHHHHHHHcCcCEEEecC
Q psy12516 120 EMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVP-------PHNVTRVATALYKMGCYEISLGD 192 (327)
Q Consensus 120 d~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~-------~e~l~~~~~~~~~~g~~~i~l~D 192 (327)
+. .+++.++.+++.++.|++.|.+........ .+...... .+.+.++++.+.+.|+. +.+--
T Consensus 75 ~~--------~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~-l~lE~ 143 (275)
T 3qc0_A 75 AS--------GREKAIDDNRRAVDEAAELGADCLVLVAGG--LPGGSKNIDAARRMVVEGIAAVLPHARAAGVP-LAIEP 143 (275)
T ss_dssp HH--------HHHHHHHHHHHHHHHHHHTTCSCEEEECBC--CCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCC-EEECC
T ss_pred HH--------HHHHHHHHHHHHHHHHHHhCCCEEEEeeCC--CCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCE-EEEeE
Confidence 00 112346777788888888887643322111 11111111 13344455555566765 33332
Q ss_pred C--------CCccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHH--hcCceeeecc--ccCCCC---
Q psy12516 193 T--------IGVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAME--FGISVFDSSI--AGLGGC--- 254 (327)
Q Consensus 193 t--------~G~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~--~G~~~vd~s~--~G~G~~--- 254 (327)
. .-..+|.++.+++..+-. .+-+.+ |.+- +-.....+..+. .=+.+|+..= .+.++.
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~l~~~~~~---~vg~~~D~~h~~~--~~d~~~~l~~~~~~~~i~~vH~~D~~~~~~~~~~~ 218 (275)
T 3qc0_A 144 LHPMYAADRACVNTLGQALDICETLGP---GVGVAIDVYHVWW--DPDLANQIARAGKMKAILAHHICDWLVPTKDMLTD 218 (275)
T ss_dssp CCGGGTTTTBSCCCHHHHHHHHHHHCT---TEEEEEEHHHHTT--CTTHHHHHHHHHHTTCEEEEEECBCCSSCCCSSSB
T ss_pred CCCcccCCccccCCHHHHHHHHHHhCc---ccEEEEEhhhhee--CCCHHHHHHHcCccceEEEEEecCCCCCcccccCC
Confidence 2 123467776666665532 122222 4443 323333444333 1233343322 121110
Q ss_pred CCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 255 PYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 255 p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
...+| .|..+...++..|++.||+-
T Consensus 219 r~~~G-~G~id~~~~~~~L~~~gy~g 243 (275)
T 3qc0_A 219 RGMMG-DGVIDLKGIRRRIEAAGFHG 243 (275)
T ss_dssp CBCTT-SSCCCHHHHHHHHHHTTCCC
T ss_pred CcCCC-CCccCHHHHHHHHHHcCCCc
Confidence 01244 69999999999999987763
|
| >3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ... | Back alignment and structure |
|---|
Probab=85.42 E-value=20 Score=32.95 Aligned_cols=107 Identities=12% Similarity=0.157 Sum_probs=67.0
Q ss_pred cCChHHHHHHHHHHHHHHH-HcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc---CcCEEEecCCCCccCH---H
Q psy12516 128 NCTIEESLERFSEVVSTAL-TNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM---GCYEISLGDTIGVGTP---G 200 (327)
Q Consensus 128 ~~s~ee~i~~~~~~v~~a~-~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~---g~~~i~l~Dt~G~~~P---~ 200 (327)
+.+.+++++.+.+.++.++ +.|+.+...++.. |..++...+.++.+.++ ++-.|-|+-.-....| .
T Consensus 120 gl~~~~vv~~v~~~~~~a~~~~gi~~~lI~~~~-------R~~~~~a~e~~~la~~~~~~~vvG~dL~g~E~~~~~~~~~ 192 (367)
T 3iar_A 120 DLTPDEVVALVGQGLQEGERDFGVKARSILCCM-------RHQPNWSPKVVELCKKYQQQTVVAIDLAGDETIPGSSLLP 192 (367)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE-------TTCGGGHHHHHHHHHHTTTTTEEEEEEESCTTSTTGGGCH
T ss_pred CCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEeC-------CCCCHHHHHHHHHHHhhCCCCEEEEcCCCcccCCCcchHH
Confidence 5788888888888887664 4599887665542 23333344555555554 3334444322222344 5
Q ss_pred HHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHH-hcCceee
Q psy12516 201 TMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFD 245 (327)
Q Consensus 201 ~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~-~G~~~vd 245 (327)
+..+.+...++. ++++.+|+....+. .+...|+. .|+++|+
T Consensus 193 ~f~~~f~~A~~~--gl~~~~HagE~~~~--~~i~~al~~lg~~RIg 234 (367)
T 3iar_A 193 GHVQAYQEAVKS--GIHRTVHAGEVGSA--EVVKEAVDILKTERLG 234 (367)
T ss_dssp HHHHHHHHHHHH--TCEEEEEESSSSCH--HHHHHHHHTSCCSEEE
T ss_pred HHHHHHHHHHHc--CCeeEEecCCcCCh--HHHHHHHHccCCceee
Confidence 677777766653 56899999877653 46677884 7999864
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=85.39 E-value=2.7 Score=38.61 Aligned_cols=69 Identities=12% Similarity=0.074 Sum_probs=50.5
Q ss_pred HHHHHHHHc--CcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 175 RVATALYKM--GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 175 ~~~~~~~~~--g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+.++.+.+. |++.+.+--+.| .|..+.+.++.+++.+|++++.+.. .+....+..++++|+|.|+++..
T Consensus 121 ~~~~~l~~~~~g~~~i~i~~~~g--~~~~~~~~i~~lr~~~~~~~vi~g~----v~t~e~A~~a~~aGaD~I~v~~g 191 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLDVANG--YSEHFVEFVKDVRKRFPQHTIMAGN----VVTGEMVEELILSGADIIKVGIG 191 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCT--TBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHHhccCCCCEEEEEecCC--CcHHHHHHHHHHHHhcCCCeEEEEe----CCCHHHHHHHHHhCCCEEEECCC
Confidence 445556665 889877643344 4667788899999999777877643 34467788999999999998743
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=85.38 E-value=6.5 Score=35.70 Aligned_cols=93 Identities=12% Similarity=0.088 Sum_probs=61.6
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC--cCEEEecCCCCccCHHHHHHHHHHHHHhcCCCe
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG--CYEISLGDTIGVGTPGTMRLMLEDVLTVIPADR 217 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g--~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~ 217 (327)
+.++.+++.|+.+.+. ++ .+++. .+.++.+.+.| ++.|.+--..| .|....+.++.+++.++.++
T Consensus 85 ~~i~~~~~~g~~v~v~----~g------~~~~~-~~~a~~~~~~g~~~~~i~i~~~~G--~~~~~~~~i~~lr~~~~~~~ 151 (336)
T 1ypf_A 85 SFIRDMQSRGLIASIS----VG------VKEDE-YEFVQQLAAEHLTPEYITIDIAHG--HSNAVINMIQHIKKHLPESF 151 (336)
T ss_dssp HHHHHHHHTTCCCEEE----EC------CSHHH-HHHHHHHHHTTCCCSEEEEECSSC--CSHHHHHHHHHHHHHCTTSE
T ss_pred HHHHHHHhcCCeEEEe----CC------CCHHH-HHHHHHHHhcCCCCCEEEEECCCC--CcHHHHHHHHHHHHhCCCCE
Confidence 3455666677654432 22 23333 35577888888 88876621233 67788899999999987655
Q ss_pred EEEeecCCcCcHHHHHHHHHHhcCceeeeccc
Q psy12516 218 LAVHCHDTYGQALANILTAMEFGISVFDSSIA 249 (327)
Q Consensus 218 l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~ 249 (327)
+.. . ..+....+..+.++|++.|.++-.
T Consensus 152 vi~-G---~v~s~e~A~~a~~aGad~Ivvs~h 179 (336)
T 1ypf_A 152 VIA-G---NVGTPEAVRELENAGADATKVGIG 179 (336)
T ss_dssp EEE-E---EECSHHHHHHHHHHTCSEEEECSS
T ss_pred EEE-C---CcCCHHHHHHHHHcCCCEEEEecC
Confidence 542 2 124467889999999999998643
|
| >3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A* | Back alignment and structure |
|---|
Probab=85.27 E-value=2.1 Score=38.16 Aligned_cols=98 Identities=14% Similarity=0.143 Sum_probs=63.8
Q ss_pred HHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHH---HHHHHHHHHhcCCCe
Q psy12516 141 VVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTM---RLMLEDVLTVIPADR 217 (327)
Q Consensus 141 ~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~---~~~~~~~~~~~~~~~ 217 (327)
+++.+.+.|..|. ++.-. -.+++++...++.+.+.|-+.|.|+...-...+... ..-+..+|+.+++.|
T Consensus 126 LLr~va~~gkPVi--lK~G~------~~t~~ei~~ave~i~~~Gn~~i~L~erg~~y~~~~~~vdl~~i~~lk~~~~~~p 197 (285)
T 3sz8_A 126 LVVAIAKAGKPVN--VKKPQ------FMSPTQLKHVVSKCGEVGNDRVMLCERGSSFGYDNLVVDMLGFRQMAETTGGCP 197 (285)
T ss_dssp HHHHHHHTSSCEE--EECCT------TSCGGGTHHHHHHHHHTTCCCEEEEECCEECSSSCEECCTTHHHHHHHHTTSCC
T ss_pred HHHHHHccCCcEE--EeCCC------CCCHHHHHHHHHHHHHcCCCcEEEEeCCCCCCCCcCccCHHHHHHHHHhCCCCC
Confidence 4555556788764 33211 158889999999999999887777764332211110 223667888887678
Q ss_pred EEE-eecCC----------cC---cHHHHHHHHHHhcCc--eeee
Q psy12516 218 LAV-HCHDT----------YG---QALANILTAMEFGIS--VFDS 246 (327)
Q Consensus 218 l~~-H~Hn~----------~g---~a~an~l~a~~~G~~--~vd~ 246 (327)
+.+ ..|-. .| +....+++|+.+|++ .|+.
T Consensus 198 V~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~ 242 (285)
T 3sz8_A 198 VIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEA 242 (285)
T ss_dssp EEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEE
T ss_pred EEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEe
Confidence 988 77752 22 337788999999999 5654
|
| >3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=85.23 E-value=21 Score=32.09 Aligned_cols=206 Identities=14% Similarity=0.050 Sum_probs=108.5
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcCC-CeeEEEe-cCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~~-~~~~~H~-h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
++++.+.+.|+|.|.++-|+| .+|..+-.++++...+...+ +++-.+. .++..-++..+..|-++|++.+=+.-.
T Consensus 47 ~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P 126 (315)
T 3si9_A 47 NFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAGADAVLVVTP 126 (315)
T ss_dssp HHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcCCCEEEECCC
Confidence 456788899999999999995 56788877888877776542 4544433 233333444444444555544433222
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
.... ++.+.+ ++-++.+ +...++.+..|-
T Consensus 127 ~y~~----------~~~~~l--------------------------------------~~~f~~v---a~a~~lPiilYn 155 (315)
T 3si9_A 127 YYNR----------PNQRGL--------------------------------------YTHFSSI---AKAISIPIIIYN 155 (315)
T ss_dssp CSSC----------CCHHHH--------------------------------------HHHHHHH---HHHCSSCEEEEE
T ss_pred CCCC----------CCHHHH--------------------------------------HHHHHHH---HHcCCCCEEEEe
Confidence 1110 111222 2222222 223467665442
Q ss_pred e-eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHH
Q psy12516 157 S-CVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANIL 234 (327)
Q Consensus 157 ~-~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l 234 (327)
. ... ....+++.+.++++. . ...+.++|+.|-+ .++.++++. .++ .+.+ -..++ ..+
T Consensus 156 ~P~~t----g~~l~~~~~~~La~~---~-pnIvgiKdssgd~--~~~~~l~~~----~~~-~f~v~~G~d~------~~l 214 (315)
T 3si9_A 156 IPSRS----VIDMAVETMRDLCRD---F-KNIIGVKDATGKI--ERASEQREK----CGK-DFVQLSGDDC------TAL 214 (315)
T ss_dssp CHHHH----SCCCCHHHHHHHHHH---C-TTEEEEEECSCCT--HHHHHHHHH----HCS-SSEEEESCGG------GHH
T ss_pred Cchhh----CCCCCHHHHHHHHhh---C-CCEEEEEeCCCCH--HHHHHHHHH----cCC-CeEEEecCHH------HHH
Confidence 1 011 124677766665532 2 5789999998863 445554443 332 2333 33332 246
Q ss_pred HHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHH
Q psy12516 235 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYIC 295 (327)
Q Consensus 235 ~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~ 295 (327)
.++..|++.+ +. .++|..-+.++...+... .=|+++-.++.+.+.
T Consensus 215 ~~l~~G~~G~---is----------~~an~~P~~~~~l~~a~~---~Gd~~~A~~l~~~l~ 259 (315)
T 3si9_A 215 GFNAHGGVGC---IS----------VSSNVAPKLCAQLHAACL---CSDYKTALKLNDLLM 259 (315)
T ss_dssp HHHHTTCCEE---EE----------SGGGTCHHHHHHHHHHHH---TTCHHHHHHHHHHHH
T ss_pred HHHHcCCCEE---Ee----------cHHHhhHHHHHHHHHHHH---cCCHHHHHHHHHHHH
Confidence 6788887643 22 355777777776665420 114444444444443
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=85.03 E-value=7.3 Score=37.64 Aligned_cols=69 Identities=16% Similarity=0.118 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
...+.++.+.+.|++.|.+-.+.| .+..+.++++.+++.+|++++..-.=. ....+..++++|++.|..
T Consensus 256 d~~era~aLveaGvd~I~Id~a~g--~~~~v~~~i~~i~~~~~~~~vi~g~v~----t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 256 DAMTRIDALVKASVDAIVLDTAHG--HSQGVIDKVKEVRAKYPSLNIIAGNVA----TAEATKALIEAGANVVKV 324 (511)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCT--TSHHHHHHHHHHHHHCTTSEEEEEEEC----SHHHHHHHHHHTCSEEEE
T ss_pred chHHHHHHHHhhccceEEeccccc--chhhhhhHHHHHHHhCCCceEEeeeec----cHHHHHHHHHhCCCEEEE
Confidence 345667788999999998876654 456788899999999988777653222 235578889999999986
|
| >2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=84.97 E-value=18 Score=31.45 Aligned_cols=185 Identities=14% Similarity=0.171 Sum_probs=93.5
Q ss_pred HHHHHHcCcCEEEecCC-c---------cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchH-HHHHHHHHHcCCcEEE
Q psy12516 4 ASALYKMGCYEISLGDT-I---------GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFD 72 (327)
Q Consensus 4 ~~~~~~~g~~~i~~~Dt-~---------G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~-~~~~~~a~~aG~~~id 72 (327)
++.+.++|+|.|.+.|. . +..|..++-..++.+.+..+ .++..-.-.-||.. ..|+...+++|+.-|.
T Consensus 33 A~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~~-~pviaD~~~Gyg~~~~~~~~~l~~aGa~gv~ 111 (255)
T 2qiw_A 33 AGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAVS-IPVSVDVESGYGLSPADLIAQILEAGAVGIN 111 (255)
T ss_dssp HHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHCS-SCEEEECTTCTTCCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcCC-CCEEeccCCCcCcHHHHHHHHHHHcCCcEEE
Confidence 56677899999999972 3 46677777777788877665 44433333333211 4444444555655543
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
+-+.. |..-+-=.+.++..++++.+++.+.+.|+.+
T Consensus 112 -----------------------------------------iEd~~---~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~ 147 (255)
T 2qiw_A 112 -----------------------------------------VEDVV---HSEGKRVREAQEHADYIAAARQAADVAGVDV 147 (255)
T ss_dssp -----------------------------------------ECSEE---GGGTTEECCHHHHHHHHHHHHHHHHHHTCCC
T ss_pred -----------------------------------------ECCCC---CCCCCcccCHHHHHHHHHHHHHHHHhcCCCe
Confidence 21111 0000000133444566666666666557763
Q ss_pred EEEEee-eccCCCCCCC----ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcC
Q psy12516 153 RGYISC-VVGCPYEGAV----PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYG 227 (327)
Q Consensus 153 ~~~l~~-~~g~~~~~r~----~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g 227 (327)
.+.-.. .+. .++. ..+..++-++.+.++|+|.|.+. |.-+++.+ +.+.+.++ +|+-+-.... +
T Consensus 148 ~v~aRtd~~~---~g~~~~~~~~~~ai~ra~a~~eAGAd~i~~e---~~~~~~~~----~~i~~~~~-~P~n~~~~~~-~ 215 (255)
T 2qiw_A 148 VINGRTDAVK---LGADVFEDPMVEAIKRIKLMEQAGARSVYPV---GLSTAEQV----ERLVDAVS-VPVNITAHPV-D 215 (255)
T ss_dssp EEEEEECHHH---HCTTTSSSHHHHHHHHHHHHHHHTCSEEEEC---CCCSHHHH----HHHHTTCS-SCBEEECBTT-T
T ss_pred EEEEEechhh---ccCCcchHHHHHHHHHHHHHHHcCCcEEEEc---CCCCHHHH----HHHHHhCC-CCEEEEecCC-C
Confidence 221111 000 0111 24677777888889999999883 33334444 44444554 3443332211 1
Q ss_pred -cHHHHHHHHHHhcCceee
Q psy12516 228 -QALANILTAMEFGISVFD 245 (327)
Q Consensus 228 -~a~an~l~a~~~G~~~vd 245 (327)
.-.-..-..-+.|+++|-
T Consensus 216 ~~p~~~~~eL~~lGv~~v~ 234 (255)
T 2qiw_A 216 GHGAGDLATLAGLGVRRVT 234 (255)
T ss_dssp BBTTBCHHHHHHTTCCEEE
T ss_pred CCCCCCHHHHHHcCCCEEE
Confidence 001122344456666654
|
| >1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* | Back alignment and structure |
|---|
Probab=84.84 E-value=20 Score=31.80 Aligned_cols=110 Identities=15% Similarity=0.115 Sum_probs=61.1
Q ss_pred CCCcHHHHHHHhhhhhcc-cCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQ-CGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~-~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r 167 (327)
|..+.+.+...++ ..++ .|++.+-+...+.+. ...|.+|..+-++.+++.+.. ...|.+. .+.
T Consensus 19 g~iD~~~l~~lv~-~li~~~Gv~gl~~~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-rvpviaG---------vg~ 82 (293)
T 1f6k_A 19 GTINEKGLRQIIR-HNIDKMKVDGLYVGGSTGEN-----FMLSTEEKKEIFRIAKDEAKD-QIALIAQ---------VGS 82 (293)
T ss_dssp SCBCHHHHHHHHH-HHHHTSCCSEEEESSGGGTG-----GGSCHHHHHHHHHHHHHHHTT-SSEEEEE---------CCC
T ss_pred CCcCHHHHHHHHH-HHHhhCCCcEEEeCccccch-----hhCCHHHHHHHHHHHHHHhCC-CCeEEEe---------cCC
Confidence 6677666555443 3356 788877766665552 234455544444444444322 2333211 122
Q ss_pred CChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhcC
Q psy12516 168 VPPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~~ 214 (327)
.+.++..++++.+.+.|+|.+.+ +-..-..+++.+.+.++.+.+..+
T Consensus 83 ~~t~~ai~la~~a~~~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~ 130 (293)
T 1f6k_A 83 VNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETG 130 (293)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCC
Confidence 45667777777777778775443 333333566777777777776654
|
| >2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=84.83 E-value=16 Score=33.09 Aligned_cols=115 Identities=16% Similarity=0.117 Sum_probs=64.6
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+...+.+. ...+.+|..+-++.+++.+.. .+.|.+.+ +..
T Consensus 50 g~iD~~~l~~lv~-~li~~Gv~Gl~v~GtTGE~-----~~Ls~eEr~~vi~~~ve~~~g-rvpViaGv---------g~~ 113 (332)
T 2r8w_A 50 GRVDIEAFSALIA-RLDAAEVDSVGILGSTGIY-----MYLTREERRRAIEAAATILRG-RRTLMAGI---------GAL 113 (332)
T ss_dssp CCBCHHHHHHHHH-HHHHHTCSEEEESSTTTTG-----GGSCHHHHHHHHHHHHHHHTT-SSEEEEEE---------CCS
T ss_pred CCcCHHHHHHHHH-HHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CCcEEEec---------CCC
Confidence 6677666554433 3466788877766655542 234445544444444444322 24443211 124
Q ss_pred ChHHHHHHHHHHHHcCcCEEEec-CCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~-Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.++..++++.+.+.|+|.+.+. -..-..+++.+.+.++.+.+..+ +||.+
T Consensus 114 st~eai~la~~A~~~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~-lPiil 165 (332)
T 2r8w_A 114 RTDEAVALAKDAEAAGADALLLAPVSYTPLTQEEAYHHFAAVAGATA-LPLAI 165 (332)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCS-SCEEE
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 56677778888888888865443 33334566777777777776654 45443
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=84.79 E-value=17 Score=30.88 Aligned_cols=90 Identities=18% Similarity=0.242 Sum_probs=47.2
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC-EEEecCCCC---cc--CHHHHHHHHHHHHHh
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY-EISLGDTIG---VG--TPGTMRLMLEDVLTV 212 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~-~i~l~Dt~G---~~--~P~~~~~~~~~~~~~ 212 (327)
.++++.+++.|.++...+. + ..+.+.+..+ .+. ++ .+++-...| .. .+....+.++.+++.
T Consensus 123 ~~~~~~~~~~g~~~~~~i~-----~---~t~~e~~~~~----~~~-~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~ 189 (248)
T 1geq_A 123 KEFTEIAREEGIKTVFLAA-----P---NTPDERLKVI----DDM-TTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRI 189 (248)
T ss_dssp HHHHHHHHHHTCEEEEEEC-----T---TCCHHHHHHH----HHH-CSSEEEEECCC-------CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEEEC-----C---CCHHHHHHHH----Hhc-CCCeEEEEECCccCCCCCCCChhHHHHHHHHHhh
Confidence 3456667777887643221 1 1233333322 222 44 555544433 21 224456678888876
Q ss_pred cCCCeEEEeecCCcCcHH-HHHHHHHHhcCceeee
Q psy12516 213 IPADRLAVHCHDTYGQAL-ANILTAMEFGISVFDS 246 (327)
Q Consensus 213 ~~~~~l~~H~Hn~~g~a~-an~l~a~~~G~~~vd~ 246 (327)
.. +++.. ..|... .|....+++|++.|-+
T Consensus 190 ~~-~pi~~----~GGI~~~e~i~~~~~~Gad~viv 219 (248)
T 1geq_A 190 CR-NKVAV----GFGVSKREHVVSLLKEGANGVVV 219 (248)
T ss_dssp CS-SCEEE----ESCCCSHHHHHHHHHTTCSEEEE
T ss_pred cC-CCEEE----EeecCCHHHHHHHHHcCCCEEEE
Confidence 53 45544 346666 6777777899887643
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.69 E-value=10 Score=36.40 Aligned_cols=69 Identities=12% Similarity=0.027 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
...+.++.+.+.|+|.|.+--+.| .+..+.+.++.+++.+|++++..-. ......+..+.++|++.|..
T Consensus 229 ~~~~~a~~l~~aG~d~I~id~a~g--~~~~~~~~v~~i~~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 229 DTGERVAALVAAGVDVVVVDTAHG--HSKGVIERVRWVKQTFPDVQVIGGN----IATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp THHHHHHHHHHTTCSEEEEECSCC--SBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEE
T ss_pred chHHHHHHHhhcccceEEecccCC--cchhHHHHHHHHHHHCCCceEEEee----eCcHHHHHHHHHcCCCEEEE
Confidence 445667888899999988754433 4567888999999999887776621 12345678889999999986
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=84.53 E-value=22 Score=31.86 Aligned_cols=71 Identities=13% Similarity=0.043 Sum_probs=45.6
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcCC-CeeEEEe-cCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~~-~~~~~H~-h~~~g~~~~~~~~a~~aG~~~id 72 (327)
++++.+.+.|+|.|.++-|+| .+|..+-.++++.+.+...+ +++-.+. .++..-++..+..|.++|++.+=
T Consensus 49 ~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~Gadavl 124 (315)
T 3na8_A 49 RSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLGAEAVM 124 (315)
T ss_dssp HHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcCCCEEE
Confidence 456788899999999999996 46788888888877776542 5544443 23333344444444455555443
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=84.51 E-value=7.4 Score=33.39 Aligned_cols=67 Identities=16% Similarity=0.292 Sum_probs=50.2
Q ss_pred HHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccC
Q psy12516 177 ATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGL 251 (327)
Q Consensus 177 ~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~ 251 (327)
++.+.+.|+|.|.+ |+.....|..+.++++.+++. +..+..-+|+ ...+..+.++|++.|=+++.|+
T Consensus 94 i~~~~~~Gad~V~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~ 160 (232)
T 3igs_A 94 VDALAQAGAAIIAV-DGTARQRPVAVEALLARIHHH--HLLTMADCSS-----VDDGLACQRLGADIIGTTMSGY 160 (232)
T ss_dssp HHHHHHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECCS-----HHHHHHHHHTTCSEEECTTTTS
T ss_pred HHHHHHcCCCEEEE-CccccCCHHHHHHHHHHHHHC--CCEEEEeCCC-----HHHHHHHHhCCCCEEEEcCccC
Confidence 45678899998855 776667888899999998864 4556665554 4566888999999996666655
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=84.51 E-value=2.9 Score=38.66 Aligned_cols=67 Identities=13% Similarity=0.110 Sum_probs=48.6
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecc
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 75 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~ 75 (327)
+.++++.++|+|.|.+ |+. |. +..+.+.++++++.+|++++..-.- .....+..++++|++.|.++.
T Consensus 103 e~~~~a~~aGvdvI~i-d~a~G~--~~~~~e~I~~ir~~~~~~~Vi~G~V----~T~e~A~~a~~aGaD~I~Vg~ 170 (361)
T 3r2g_A 103 QRAEALRDAGADFFCV-DVAHAH--AKYVGKTLKSLRQLLGSRCIMAGNV----ATYAGADYLASCGADIIKAGI 170 (361)
T ss_dssp HHHHHHHHTTCCEEEE-ECSCCS--SHHHHHHHHHHHHHHTTCEEEEEEE----CSHHHHHHHHHTTCSEEEECC
T ss_pred HHHHHHHHcCCCEEEE-eCCCCC--cHhHHHHHHHHHHhcCCCeEEEcCc----CCHHHHHHHHHcCCCEEEEcC
Confidence 5788999999997655 443 43 4556678899999887777665222 234567888899999999853
|
| >2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A | Back alignment and structure |
|---|
Probab=84.45 E-value=11 Score=33.53 Aligned_cols=115 Identities=12% Similarity=0.081 Sum_probs=62.7
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+...+.+. ...+.+|..+-++.+++.+.. ...|.+. .+..
T Consensus 17 g~iD~~~l~~lv~-~li~~Gv~gl~~~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-r~pviaG---------vg~~ 80 (292)
T 2ojp_A 17 GNVCRASLKKLID-YHVASGTSAIVSVGTTGES-----ATLNHDEHADVVMMTLDLADG-RIPVIAG---------TGAN 80 (292)
T ss_dssp SCBCHHHHHHHHH-HHHHHTCCEEEESSTTTTG-----GGSCHHHHHHHHHHHHHHHTT-SSCEEEE---------CCCS
T ss_pred CCcCHHHHHHHHH-HHHHcCCCEEEECccccch-----hhCCHHHHHHHHHHHHHHhCC-CCcEEEe---------cCCc
Confidence 6677666544433 3456788877666555542 234445544444444444332 2333221 1224
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.++..++++.+.+.|+|.+.+ +-..-..+++.+.+.++.+.+..+ +|+.+
T Consensus 81 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~-lPiil 132 (292)
T 2ojp_A 81 ATAEAISLTQRFNDSGIVGCLTVTPYYNRPSQEGLYQHFKAIAEHTD-LPQIL 132 (292)
T ss_dssp SHHHHHHHHHHTTTSSCSEEEEECCCSSCCCHHHHHHHHHHHHTTCS-SCEEE
T ss_pred cHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 5567777777777778875443 333334566777777777776553 35443
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=84.30 E-value=16 Score=30.08 Aligned_cols=82 Identities=12% Similarity=0.109 Sum_probs=48.7
Q ss_pred HHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 141 VVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 141 ~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+++++++.|+.+.. . -.++.+ ..++.+.|+|.+.+-.. .+. -.+.++.+++.+|++|+..
T Consensus 96 ~~~~~~~~g~~vi~---g--------~~t~~e----~~~a~~~Gad~vk~~~~----~~~-g~~~~~~l~~~~~~~pvia 155 (205)
T 1wa3_A 96 ISQFCKEKGVFYMP---G--------VMTPTE----LVKAMKLGHTILKLFPG----EVV-GPQFVKAMKGPFPNVKFVP 155 (205)
T ss_dssp HHHHHHHHTCEEEC---E--------ECSHHH----HHHHHHTTCCEEEETTH----HHH-HHHHHHHHHTTCTTCEEEE
T ss_pred HHHHHHHcCCcEEC---C--------cCCHHH----HHHHHHcCCCEEEEcCc----ccc-CHHHHHHHHHhCCCCcEEE
Confidence 45566777887642 1 123443 44567899998875320 111 1245677777666667665
Q ss_pred eecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 221 HCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 221 H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
=. |....|....+++|++.|-.
T Consensus 156 ~G----GI~~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 156 TG----GVNLDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp BS----SCCTTTHHHHHHHTCSCEEE
T ss_pred cC----CCCHHHHHHHHHCCCCEEEE
Confidence 33 33345778888999887543
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=84.25 E-value=3.7 Score=39.63 Aligned_cols=70 Identities=13% Similarity=0.113 Sum_probs=51.5
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
..+.++.+.+.|+|.|.+--+.| .+..+.+.++.+++.+|++++..-. ......+..+.++|++.|..+.
T Consensus 232 ~~~~a~~l~~aG~d~I~id~a~g--~~~~~~~~i~~ir~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~Vg~ 301 (496)
T 4fxs_A 232 NEERVKALVEAGVDVLLIDSSHG--HSEGVLQRIRETRAAYPHLEIIGGN----VATAEGARALIEAGVSAVKVGI 301 (496)
T ss_dssp CHHHHHHHHHTTCSEEEEECSCT--TSHHHHHHHHHHHHHCTTCCEEEEE----ECSHHHHHHHHHHTCSEEEECS
T ss_pred hHHHHHHHHhccCceEEeccccc--cchHHHHHHHHHHHHCCCceEEEcc----cCcHHHHHHHHHhCCCEEEECC
Confidence 35667788889999988754443 4467788999999999888876621 1233556888899999998644
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=84.24 E-value=3.1 Score=36.02 Aligned_cols=59 Identities=10% Similarity=-0.123 Sum_probs=39.5
Q ss_pred CcCEEEe----cCCCCccCHHHHHHHHHHHHHhcC----CCeEEEeecCCcCcHHHHHHHHHH--hcCceeee
Q psy12516 184 GCYEISL----GDTIGVGTPGTMRLMLEDVLTVIP----ADRLAVHCHDTYGQALANILTAME--FGISVFDS 246 (327)
Q Consensus 184 g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~~----~~~l~~H~Hn~~g~a~an~l~a~~--~G~~~vd~ 246 (327)
++|.|.+ +-..|...+....+.++.+++..+ ..+|++ |-|....|.-...+ +|++.+=+
T Consensus 148 ~~D~vlvMsv~pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~v----dGGI~~~~~~~~~~~~aGad~~Vv 216 (237)
T 3cu2_A 148 QIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRRVEKLINI----DGSMTLELAKYFKQGTHQIDWLVS 216 (237)
T ss_dssp TCSEEEEESEETTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEE----ESSCCHHHHHHHHHSSSCCCCEEE
T ss_pred cCceeeeeeeccCcCCeecChhHHHHHHHHHHHHHhcCCCceEEE----ECCcCHHHHHHHHHhCCCCcEEEE
Confidence 4676544 223344445566677777777654 245555 77999999999999 99987543
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=84.18 E-value=3.6 Score=37.26 Aligned_cols=76 Identities=18% Similarity=0.239 Sum_probs=49.3
Q ss_pred CCCC-ChHHHHHHHHHHHHcCcCEEEecCC---CC--ccCHHHHHHH---HHHHHHhcCCCeEEEeecCCcCcHHHHHHH
Q psy12516 165 EGAV-PPHNVTRVATALYKMGCYEISLGDT---IG--VGTPGTMRLM---LEDVLTVIPADRLAVHCHDTYGQALANILT 235 (327)
Q Consensus 165 ~~r~-~~e~l~~~~~~~~~~g~~~i~l~Dt---~G--~~~P~~~~~~---~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~ 235 (327)
.+++ +.+...+.++++.+.|+|.|-+.=- -| ....+++.++ ++.+++.+|+++|++ |++-- ....+
T Consensus 58 gg~~~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI---DT~~~--~Vaea 132 (318)
T 2vp8_A 58 KGATFSDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV---DTWRA--QVAKA 132 (318)
T ss_dssp ------CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEE---ECSCH--HHHHH
T ss_pred CCccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE---eCCCH--HHHHH
Confidence 3443 6788899999999999999988631 12 2334555555 566677777788988 33333 34567
Q ss_pred HHHhcCceee
Q psy12516 236 AMEFGISVFD 245 (327)
Q Consensus 236 a~~~G~~~vd 245 (327)
|+++|++.|.
T Consensus 133 Al~aGa~iIN 142 (318)
T 2vp8_A 133 ACAAGADLIN 142 (318)
T ss_dssp HHHHTCCEEE
T ss_pred HHHhCCCEEE
Confidence 8889999985
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=84.17 E-value=3.1 Score=38.93 Aligned_cols=67 Identities=13% Similarity=0.146 Sum_probs=49.7
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEec
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSS 74 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~ 74 (327)
+.++.+.+.|+|.|.+ ++ +...|..+.++++++++.+|+.++....- .....+..+.++|++.|.++
T Consensus 156 ~~a~~~~~~G~d~i~i-~~-~~g~~~~~~e~i~~ir~~~~~~pviv~~v----~~~~~a~~a~~~Gad~I~vg 222 (404)
T 1eep_A 156 ERVEELVKAHVDILVI-DS-AHGHSTRIIELIKKIKTKYPNLDLIAGNI----VTKEAALDLISVGADCLKVG 222 (404)
T ss_dssp HHHHHHHHTTCSEEEE-CC-SCCSSHHHHHHHHHHHHHCTTCEEEEEEE----CSHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHCCCCEEEE-eC-CCCChHHHHHHHHHHHHHCCCCeEEEcCC----CcHHHHHHHHhcCCCEEEEC
Confidence 4567788899999988 33 23467778888999999987678776222 22456677889999999984
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=84.09 E-value=22 Score=31.64 Aligned_cols=67 Identities=21% Similarity=0.271 Sum_probs=40.1
Q ss_pred HHHHHHHHcCcCEEEecC-Cc--c---ccCHHHHHHHHHHHHhhcC-CCeeEEEecCccchHHHHHHHHHHcCCcEEEe
Q psy12516 2 KVASALYKMGCYEISLGD-TI--G---VGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISVFDS 73 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~--G---~~~p~~~~~~~~~~~~~~~-~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~ 73 (327)
+.++++.+.|+|.|-+.= ++ | +...+++++++..++.... ++++.+ |++- ..-+.+|+++|++.|..
T Consensus 56 ~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSI---DT~~--~~Va~aAl~aGa~iINd 129 (294)
T 2dqw_A 56 ERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSV---DTRK--PEVAEEALKLGAHLLND 129 (294)
T ss_dssp HHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEE---ECSC--HHHHHHHHHHTCSEEEC
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEE---ECCC--HHHHHHHHHhCCCEEEE
Confidence 567889999999988864 22 2 2223445555554444321 467755 4544 34556788889998864
|
| >3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=83.98 E-value=22 Score=31.69 Aligned_cols=110 Identities=11% Similarity=0.070 Sum_probs=53.6
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+.....+. ...+.+|..+-++.+++.+.. ...|.+. .+..
T Consensus 32 g~iD~~~l~~lv~-~li~~Gv~gl~v~GttGE~-----~~Ls~~Er~~v~~~~~~~~~g-rvpviaG---------vg~~ 95 (304)
T 3cpr_A 32 GDIDIAAGREVAA-YLVDKGLDSLVLAGTTGES-----PTTTAAEKLELLKAVREEVGD-RAKLIAG---------VGTN 95 (304)
T ss_dssp SCBCHHHHHHHHH-HHHHTTCCEEEESSTTTTT-----TTSCHHHHHHHHHHHHHHHTT-TSEEEEE---------CCCS
T ss_pred CCcCHHHHHHHHH-HHHHcCCCEEEECccccCh-----hhCCHHHHHHHHHHHHHHhCC-CCcEEec---------CCCC
Confidence 5566555544332 3355677766655554442 223444433333333433321 2333211 1124
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhcC
Q psy12516 169 PPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVIP 214 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~~ 214 (327)
+.++..++++.+.+.|+|.+.+ +-.....+++.+.+.++.+.+..+
T Consensus 96 st~~ai~la~~A~~~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~ 142 (304)
T 3cpr_A 96 NTRTSVELAEAAASAGADGLLVVTPYYSKPSQEGLLAHFGAIAAATE 142 (304)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcC
Confidence 5566666666666677764433 333333456666666666665543
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=83.96 E-value=22 Score=31.42 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=44.8
Q ss_pred HHHHHHHHcCcCEEEecC-Cc--cc--cC-HHH---HHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 2 KVASALYKMGCYEISLGD-TI--GV--GT-PGT---MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~D-t~--G~--~~-p~~---~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
+.++++.+.|+|.|-+.= ++ |. .+ .++ +...++.+++.+ ++++.+++.+- .-+.+|+++|++.|.
T Consensus 42 ~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT~~~-----~va~aAl~aGa~iIN 115 (282)
T 1aj0_A 42 KHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDTSKP-----EVIRESAKVGAHIIN 115 (282)
T ss_dssp HHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCH-----HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeCCCH-----HHHHHHHHcCCCEEE
Confidence 567888999999998876 33 31 11 233 444555555554 58888877664 345788899999987
Q ss_pred ec
Q psy12516 73 SS 74 (327)
Q Consensus 73 ~~ 74 (327)
..
T Consensus 116 dv 117 (282)
T 1aj0_A 116 DI 117 (282)
T ss_dssp ET
T ss_pred EC
Confidence 43
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=83.88 E-value=40 Score=35.36 Aligned_cols=73 Identities=15% Similarity=0.168 Sum_probs=46.9
Q ss_pred HHHHHHHHHHHcCcCEEEecCCC-------------------------CccCHH---HHHHHHHHHHHhcCCCeEEEeec
Q psy12516 172 NVTRVATALYKMGCYEISLGDTI-------------------------GVGTPG---TMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~-------------------------G~~~P~---~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
.+.++++.+.+.|+|.|.+..|. |...|. ...+.+..+++.++.+||..=.-
T Consensus 716 ~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GG 795 (1025)
T 1gte_A 716 DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGG 795 (1025)
T ss_dssp CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESS
T ss_pred HHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecC
Confidence 57788899999999999884331 222221 12367888888886677765333
Q ss_pred CCcCcHHHHHHHHHHhcCceeeec
Q psy12516 224 DTYGQALANILTAMEFGISVFDSS 247 (327)
Q Consensus 224 n~~g~a~an~l~a~~~G~~~vd~s 247 (327)
-.. ...+..++.+|++.|-..
T Consensus 796 I~s---~~da~~~l~~Ga~~v~vg 816 (1025)
T 1gte_A 796 IDS---AESGLQFLHSGASVLQVC 816 (1025)
T ss_dssp CCS---HHHHHHHHHTTCSEEEES
T ss_pred cCC---HHHHHHHHHcCCCEEEEe
Confidence 222 345566667899877653
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=83.78 E-value=9 Score=34.89 Aligned_cols=136 Identities=11% Similarity=0.008 Sum_probs=78.1
Q ss_pred hhcccCcchhhhhhhh--------hHH--HHHHhhcCChHHHHHHHHHHHHHHHHc-CCeEEEEEeeeccCCCCCCCChH
Q psy12516 103 KSMQCGVKEIAVFASA--------SEM--FSKRNINCTIEESLERFSEVVSTALTN-GIRVRGYISCVVGCPYEGAVPPH 171 (327)
Q Consensus 103 ~~~~~Gid~i~l~~~~--------sd~--~~~~~l~~s~ee~i~~~~~~v~~a~~~-Gi~v~~~l~~~~g~~~~~r~~~e 171 (327)
.+.+.|.|.+.+-... |+. +..-.++-+.+...+.+.++++..++. .+.|.+-++-.. ......+.+
T Consensus 152 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~--~~~~g~~~~ 229 (340)
T 3gr7_A 152 RAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASD--YHPDGLTAK 229 (340)
T ss_dssp HHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCC--CSTTSCCGG
T ss_pred HHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEecccc--ccCCCCCHH
Confidence 4567788877764332 221 112234556666666677777766654 444443333210 011235778
Q ss_pred HHHHHHHHHHHcCcCEEEecCCC--Cc---cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc-HHHHHHHHHHhc-Ccee
Q psy12516 172 NVTRVATALYKMGCYEISLGDTI--GV---GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ-ALANILTAMEFG-ISVF 244 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~--G~---~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~-a~an~l~a~~~G-~~~v 244 (327)
...++++.+.+.|+|.|.+.+.. .. ..|..-.+++..+++.+. +||..=. |. ....+..+++.| +|.|
T Consensus 230 ~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~-iPVi~~G----gI~s~e~a~~~L~~G~aD~V 304 (340)
T 3gr7_A 230 DYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREAD-IPTGAVG----LITSGWQAEEILQNGRADLV 304 (340)
T ss_dssp GHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTT-CCEEEES----SCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcC-CcEEeeC----CCCCHHHHHHHHHCCCeeEE
Confidence 89999999999999999986521 10 112223456777887764 4555422 22 245667778888 7755
Q ss_pred e
Q psy12516 245 D 245 (327)
Q Consensus 245 d 245 (327)
-
T Consensus 305 ~ 305 (340)
T 3gr7_A 305 F 305 (340)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=83.72 E-value=23 Score=31.35 Aligned_cols=190 Identities=15% Similarity=0.176 Sum_probs=107.9
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcC-CCeeEEEe-cCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~-~~~~~~H~-h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|++.|.++=|+| .+|.++-.++++.+.+... .+++-.+. +++..-++..+..|.++|++.+=+.-.
T Consensus 27 ~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 106 (292)
T 3daq_A 27 AHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGADAIMLITP 106 (292)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCCCEEEECCC
Confidence 456788899999999999985 4567887788887777654 35665554 445555555555666666665544333
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
.... ++.+.+ ++-++.+.+. .++.+..|-
T Consensus 107 ~y~~----------~~~~~l--------------------------------------~~~f~~ia~a---~~lPiilYn 135 (292)
T 3daq_A 107 YYNK----------TNQRGL--------------------------------------VKHFEAIADA---VKLPVVLYN 135 (292)
T ss_dssp CSSC----------CCHHHH--------------------------------------HHHHHHHHHH---HCSCEEEEE
T ss_pred CCCC----------CCHHHH--------------------------------------HHHHHHHHHh---CCCCEEEEe
Confidence 2221 122222 2222222222 266665442
Q ss_pred e-eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHH
Q psy12516 157 S-CVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILT 235 (327)
Q Consensus 157 ~-~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~ 235 (327)
. ... ....+++.+.++++ -...+.++|+.|- ..+ +..+++..++..+.+-.=+| ...+.
T Consensus 136 ~P~~t----g~~l~~~~~~~La~-----~pnivgiK~ssgd--~~~----~~~~~~~~~~~~f~v~~G~d-----~~~~~ 195 (292)
T 3daq_A 136 VPSRT----NMTIEPETVEILSQ-----HPYIVALKDATND--FEY----LEEVKKRIDTNSFALYSGND-----DNVVE 195 (292)
T ss_dssp CHHHH----SCCCCHHHHHHHHT-----STTEEEEEECCCC--HHH----HHHHHTTSCTTTSEEEESCG-----GGHHH
T ss_pred ccccc----CCCCCHHHHHHHhc-----CCCEEEEEeCCCC--HHH----HHHHHHHCCCCCEEEEECCH-----HHHHH
Confidence 1 011 12467777666553 3578999999984 333 34444455531344333332 12466
Q ss_pred HHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 236 AMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 236 a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++..|++.+ +. ..+|..-+.++...+.
T Consensus 196 ~l~~G~~G~---is----------~~~n~~P~~~~~l~~a 222 (292)
T 3daq_A 196 YYQRGGQGV---IS----------VIANVIPKEFQALYDA 222 (292)
T ss_dssp HHHTTCCEE---EE----------SGGGTCHHHHHHHHHH
T ss_pred HHhcCCCEE---Ee----------CHHHhhHHHHHHHHHH
Confidence 788887643 22 3567777777776664
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=83.65 E-value=22 Score=31.18 Aligned_cols=89 Identities=10% Similarity=0.016 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcC-C
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIP-A 215 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~-~ 215 (327)
.+.++++.+++.|+.+-+. -++.+++. ++.+.|++.|.+-.......+-++ +.+..+++.+| +
T Consensus 150 ~l~~l~~~a~~lGl~~lve-----------v~t~ee~~----~A~~~Gad~IGv~~r~l~~~~~dl-~~~~~l~~~v~~~ 213 (272)
T 3qja_A 150 VLVSMLDRTESLGMTALVE-----------VHTEQEAD----RALKAGAKVIGVNARDLMTLDVDR-DCFARIAPGLPSS 213 (272)
T ss_dssp HHHHHHHHHHHTTCEEEEE-----------ESSHHHHH----HHHHHTCSEEEEESBCTTTCCBCT-THHHHHGGGSCTT
T ss_pred HHHHHHHHHHHCCCcEEEE-----------cCCHHHHH----HHHHCCCCEEEECCCcccccccCH-HHHHHHHHhCccc
Confidence 4666788888889986321 14555543 344679998888643322111111 22445555555 4
Q ss_pred CeEEEeecCCcCcH-HHHHHHHHHhcCceee
Q psy12516 216 DRLAVHCHDTYGQA-LANILTAMEFGISVFD 245 (327)
Q Consensus 216 ~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd 245 (327)
+++.. -.|.. ..+.....++|++.|=
T Consensus 214 ~pvVa----egGI~t~edv~~l~~~Gadgvl 240 (272)
T 3qja_A 214 VIRIA----ESGVRGTADLLAYAGAGADAVL 240 (272)
T ss_dssp SEEEE----ESCCCSHHHHHHHHHTTCSEEE
T ss_pred CEEEE----ECCCCCHHHHHHHHHcCCCEEE
Confidence 45443 22444 5667777788887653
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=83.64 E-value=2.9 Score=39.09 Aligned_cols=69 Identities=14% Similarity=0.177 Sum_probs=51.7
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHHHHHHhcCceeeecc
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANILTAMEFGISVFDSSI 248 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l~a~~~G~~~vd~s~ 248 (327)
..+.++.+.+.|+|.|.+ ++ +...|..+.++++.+++.+|+.++.+ ..+ ...-+..+.++|++.|.++.
T Consensus 154 ~~~~a~~~~~~G~d~i~i-~~-~~g~~~~~~e~i~~ir~~~~~~pviv~~v~-----~~~~a~~a~~~Gad~I~vg~ 223 (404)
T 1eep_A 154 TIERVEELVKAHVDILVI-DS-AHGHSTRIIELIKKIKTKYPNLDLIAGNIV-----TKEAALDLISVGADCLKVGI 223 (404)
T ss_dssp HHHHHHHHHHTTCSEEEE-CC-SCCSSHHHHHHHHHHHHHCTTCEEEEEEEC-----SHHHHHHHHTTTCSEEEECS
T ss_pred HHHHHHHHHHCCCCEEEE-eC-CCCChHHHHHHHHHHHHHCCCCeEEEcCCC-----cHHHHHHHHhcCCCEEEECC
Confidence 355667788899999988 32 23467888899999999987778876 222 24667788899999999853
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=83.46 E-value=12 Score=32.97 Aligned_cols=101 Identities=11% Similarity=0.226 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcCCeE-EEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCC-------------------Ccc
Q psy12516 138 FSEVVSTALTNGIRV-RGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTI-------------------GVG 197 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v-~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~-------------------G~~ 197 (327)
+.+..+.+++.|-.. ..++. -| .-+.+...++.+.+.+.|+|.|.|.=-. .-.
T Consensus 7 i~~~f~~~~~~~~~ali~yi~--aG-----dP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~ 79 (271)
T 3nav_A 7 YQALFQRLSAAQQGAFVPFVT--IG-----DPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKT 79 (271)
T ss_dssp HHHHHHHHHHTTBCEEEEEEE--TT-----SSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhcCCCeEEEEEe--CC-----CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCC
Confidence 445566666666543 23332 12 2356788899999999999976654222 113
Q ss_pred CHHHHHHHHHHHHHhcCCCeEEEeecCC--cCcHHHH-HHHHHHhcCceee
Q psy12516 198 TPGTMRLMLEDVLTVIPADRLAVHCHDT--YGQALAN-ILTAMEFGISVFD 245 (327)
Q Consensus 198 ~P~~~~~~~~~~~~~~~~~~l~~H~Hn~--~g~a~an-~l~a~~~G~~~vd 245 (327)
+..++-++++.+|+..+++|+.+-+.-| +..++.+ +..+.++|++.+=
T Consensus 80 ~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvI 130 (271)
T 3nav_A 80 TPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVL 130 (271)
T ss_dssp CHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEE
T ss_pred CHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEE
Confidence 3446667889999876677888866533 2333333 4556789988753
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=83.42 E-value=2.8 Score=36.12 Aligned_cols=70 Identities=16% Similarity=0.241 Sum_probs=51.8
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+.++++.++|+|.|. .|++-..+|..+.++++.+++. +..+..-.|+ ...+..+.++|++.|-+++.|+.
T Consensus 92 ~~i~~~~~~Gad~V~-l~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~t 161 (232)
T 3igs_A 92 DDVDALAQAGAAIIA-VDGTARQRPVAVEALLARIHHH--HLLTMADCSS-----VDDGLACQRLGADIIGTTMSGYT 161 (232)
T ss_dssp HHHHHHHHHTCSEEE-EECCSSCCSSCHHHHHHHHHHT--TCEEEEECCS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred HHHHHHHHcCCCEEE-ECccccCCHHHHHHHHHHHHHC--CCEEEEeCCC-----HHHHHHHHhCCCCEEEEcCccCC
Confidence 356788999999884 4777777888888989888774 3556555554 35567888999999976555543
|
| >3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A | Back alignment and structure |
|---|
Probab=83.41 E-value=24 Score=31.47 Aligned_cols=31 Identities=16% Similarity=0.302 Sum_probs=17.2
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
|..+.+.+...++ ..++.|++.+-+...+.+
T Consensus 24 g~iD~~~l~~lv~-~li~~Gv~gl~v~GtTGE 54 (309)
T 3fkr_A 24 GDLDLASQKRAVD-FMIDAGSDGLCILANFSE 54 (309)
T ss_dssp SSBCHHHHHHHHH-HHHHTTCSCEEESSGGGT
T ss_pred CCcCHHHHHHHHH-HHHHcCCCEEEECccccC
Confidence 5666665544433 345677776665554444
|
| >3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.37 E-value=8.3 Score=33.13 Aligned_cols=209 Identities=16% Similarity=0.177 Sum_probs=97.5
Q ss_pred eeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHH
Q psy12516 44 RLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMF 122 (327)
Q Consensus 44 ~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~ 122 (327)
++|+|.-...+..+...+..+ +.|.+.||.-...-. .|. ......++ +..+++...+.|+..+.+..+..
T Consensus 3 klg~~~~~~~~~~~~~~~~~~~~~G~~~vEl~~~~~~--~~~---~~~~~~~~-~~~~~~~~~~~gl~~~~~h~~~~--- 73 (270)
T 3aam_A 3 RYGFHLSIAGKKGVAGAVEEATALGLTAFQIFAKSPR--SWR---PRALSPAE-VEAFRALREASGGLPAVIHASYL--- 73 (270)
T ss_dssp EEEEBCCCCSTTHHHHHHHHHHHHTCSCEEEESSCTT--CCS---CCCCCHHH-HHHHHHHHHHTTCCCEEEECCTT---
T ss_pred eeeeccccCCCccHHHHHHHHHHcCCCEEEEeCCCCC--cCc---CCCCCHHH-HHHHHHHHHHcCCceEEEecCcc---
Confidence 577776554445566665554 799999997222111 111 11111222 22333333334442111111100
Q ss_pred HHHhhc---CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH-----HcCcCEEEecCCC
Q psy12516 123 SKRNIN---CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY-----KMGCYEISLGDTI 194 (327)
Q Consensus 123 ~~~~l~---~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~-----~~g~~~i~l~Dt~ 194 (327)
.++. ..++..++.+++.++.|.+.|.+.... ..|.. .++.+.+..+++. +.|+ .|.+--+.
T Consensus 74 --~~l~s~~~~r~~~~~~~~~~i~~a~~lGa~~vv~---h~g~~-----~~~~~~~~l~~l~~~a~~~~gv-~l~lEn~~ 142 (270)
T 3aam_A 74 --VNLGAEGELWEKSVASLADDLEKAALLGVEYVVV---HPGSG-----RPERVKEGALKALRLAGVRSRP-VLLVENTA 142 (270)
T ss_dssp --CCTTCSSTHHHHHHHHHHHHHHHHHHHTCCEEEE---CCCBS-----CHHHHHHHHHHHHHHHTCCSSS-EEEEECCC
T ss_pred --cCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEE---CCCCC-----CHHHHHHHHHHHHHhhcccCCC-EEEEecCC
Confidence 0111 112445788889999999999875421 11111 2234444333333 3454 55665543
Q ss_pred Cc----c-CHHHHHHHHHHHHHhcCCCeEEE---eecCCc-Cc--HHHHHHHHHH--hc---Cceeeeccc--cCC--C-
Q psy12516 195 GV----G-TPGTMRLMLEDVLTVIPADRLAV---HCHDTY-GQ--ALANILTAME--FG---ISVFDSSIA--GLG--G- 253 (327)
Q Consensus 195 G~----~-~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~-g~--a~an~l~a~~--~G---~~~vd~s~~--G~G--~- 253 (327)
|. . +|.++.+++..+ .+.+-+ |.+..- .+ .....+..+. .| +.+|+..=. ..| .
T Consensus 143 ~~~~~~~~~~~~~~~l~~~v-----~vg~~lD~~H~~~~g~d~~~~~~~~l~~~~~~~g~~~i~~vHl~D~~~~~~~~~d 217 (270)
T 3aam_A 143 GGGEKVGARFEELAWLVADT-----PLQVCLDTCHAYAAGYDVAEDPLGVLDALDRAVGLERVPVVHLNDSVGGLGSRVD 217 (270)
T ss_dssp CCTTBSCCSHHHHHHHHTTS-----SCEEEEEHHHHHHHTCCTTTCHHHHHHHHHHHTCGGGCCEEECCEESSCTTCCCC
T ss_pred CCCCccCCCHHHHHHHHHhC-----CEEEEEehhhHHhccCCchhhHHHHHHHHHHhcCccceeEEEEecCCCccccCcc
Confidence 32 2 788877777655 222322 333211 11 1334444331 23 444544321 111 0
Q ss_pred CCCCCCCCCCccHHHHHHHHHhCCCC
Q psy12516 254 CPYARGASGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 254 ~p~~~g~~Gn~~~e~~~~~l~~~g~~ 279 (327)
.-..+| .|..+ +.++..|++.||+
T Consensus 218 ~h~~~G-~G~id-~~~~~~L~~~~y~ 241 (270)
T 3aam_A 218 HHAHLL-QGKIG-EGLKRVFLDPRLK 241 (270)
T ss_dssp CEECTT-SSSST-THHHHHHTCGGGT
T ss_pred cccCCC-CCCcC-HHHHHHHhccCcC
Confidence 011234 68999 9999999986554
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.33 E-value=24 Score=31.31 Aligned_cols=186 Identities=15% Similarity=0.105 Sum_probs=97.9
Q ss_pred HHHHHHHHcCcCEEEecCCc--cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~--G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+-+..+.+.|+|+|.|||-. |-.||.. .+++.+++... ++ +| +-++.-|
T Consensus 50 ~~a~~A~~gGAdRIELc~~l~~GGlTPS~--g~i~~a~~~~~-ip--V~------------------------vMIRPRg 100 (287)
T 3iwp_A 50 ESAVNAERGGADRIELCSGLSEGGTTPSM--GVLQVVKQSVQ-IP--VF------------------------VMIRPRG 100 (287)
T ss_dssp HHHHHHHHHTCSEEEECBCGGGTCBCCCH--HHHHHHHTTCC-SC--EE------------------------EECCSSS
T ss_pred HHHHHHHHhCCCEEEECCCCCCCCCCCCH--HHHHHHHHhcC-CC--eE------------------------EEEecCC
Confidence 34677888999999999874 7788874 34555555432 22 22 3344333
Q ss_pred CCCCCCCccCCCcHHHHHHHhh--hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy12516 80 GCPYARGASGNVATEDLVYMLE--GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYIS 157 (327)
Q Consensus 80 ~~p~~~~~~gn~~~e~v~~~l~--~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~ 157 (327)
+ .|. -+.+++-.+.. ....+.|.|.+.+=.-..+. ..+ .++++++++.++ ++.+. +-
T Consensus 101 G-dF~------Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg------~iD----~~~~~~Li~~a~--~l~vT--FH 159 (287)
T 3iwp_A 101 G-DFL------YSDREIEVMKADIRLAKLYGADGLVFGALTEDG------HID----KELCMSLMAICR--PLPVT--FH 159 (287)
T ss_dssp S-CSC------CCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS------CBC----HHHHHHHHHHHT--TSCEE--EC
T ss_pred C-Ccc------cCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCC------CcC----HHHHHHHHHHcC--CCcEE--EE
Confidence 2 111 11223322222 34566777765432111110 001 556777777765 34443 22
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc-CHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG-TPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILT 235 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~-~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~ 235 (327)
.+| +--.+ -.+..+++.++|+++|-- .|.. +..+=.+.++.+.+... .++|-. .-|.-..|.-.
T Consensus 160 RAF----D~~~d---~~~Ale~Li~lGvdrILT---SG~~~~a~~Gl~~Lk~Lv~~a~~rI~Ima----GGGV~~~Ni~~ 225 (287)
T 3iwp_A 160 RAF----DMVHD---PMAALETLLTLGFERVLT---SGCDSSALEGLPLIKRLIEQAKGRIVVMP----GGGITDRNLQR 225 (287)
T ss_dssp GGG----GGCSC---HHHHHHHHHHHTCSEEEE---CTTSSSTTTTHHHHHHHHHHHTTSSEEEE----CTTCCTTTHHH
T ss_pred Cch----hccCC---HHHHHHHHHHcCCCEEEC---CCCCCChHHhHHHHHHHHHHhCCCCEEEE----CCCcCHHHHHH
Confidence 222 11112 346678888899999874 4432 22222233444444432 244443 22555677776
Q ss_pred HHH-hcCceeeeccccC
Q psy12516 236 AME-FGISVFDSSIAGL 251 (327)
Q Consensus 236 a~~-~G~~~vd~s~~G~ 251 (327)
-++ .|++.|+.|-...
T Consensus 226 l~~~tG~~~~H~S~~~~ 242 (287)
T 3iwp_A 226 ILEGSGATEFHCSARST 242 (287)
T ss_dssp HHHHHCCSEEEECCEEE
T ss_pred HHHhhCCCEEeECcCcc
Confidence 665 9999999986543
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=83.14 E-value=8.7 Score=33.86 Aligned_cols=131 Identities=22% Similarity=0.300 Sum_probs=73.8
Q ss_pred CccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCC
Q psy12516 51 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCT 130 (327)
Q Consensus 51 ~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s 130 (327)
++...++..+..-++.|+++|| ++|-.- |.|-.+. +
T Consensus 27 ~~~~~a~~~a~~m~~~GAdiID--IGgeST------RPga~~v------------------------------------s 62 (270)
T 4hb7_A 27 NNVETAINRVKAMIDEGADIID--VGGVST------RPGHEMV------------------------------------T 62 (270)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEE--EESCCC------STTCCCC------------------------------------C
T ss_pred CCHHHHHHHHHHHHHCCCCEEE--ECCccC------CCCCCCC------------------------------------c
Confidence 3444566677777789999999 444333 3332211 1
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCC-CccCHHHHHHHHHHH
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTI-GVGTPGTMRLMLEDV 209 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~-G~~~P~~~~~~~~~~ 209 (327)
.+|-++++.++++..++.++.+.+ |. +. .++++.+.++|++.|+ |-. |...|. +.++++
T Consensus 63 ~eeE~~Rv~pvi~~l~~~~v~iSI---------DT--~~----~~Va~~al~aGa~iIN--DVs~g~~d~~-m~~~va-- 122 (270)
T 4hb7_A 63 LEEELNRVLPVVEAIVGFDVKISV---------DT--FR----SEVAEACLKLGVDMIN--DQWAGLYDHR-MFQIVA-- 122 (270)
T ss_dssp HHHHHHHHHHHHHHHTTSSSEEEE---------EC--SC----HHHHHHHHHHTCCEEE--ETTTTSSCTH-HHHHHH--
T ss_pred hHHHHHHHHHHHHHhhcCCCeEEE---------EC--CC----HHHHHHHHHhccceec--cccccccchh-HHHHHH--
Confidence 123377788888887776665542 11 12 3667788889999765 755 455563 444433
Q ss_pred HHhcCCCeEEEeecCCcCc--H--------HHHHHHHHHhcCc----eeeec
Q psy12516 210 LTVIPADRLAVHCHDTYGQ--A--------LANILTAMEFGIS----VFDSS 247 (327)
Q Consensus 210 ~~~~~~~~l~~H~Hn~~g~--a--------~an~l~a~~~G~~----~vd~s 247 (327)
.+...-+-.|...+... - ......|.++|++ .+|-.
T Consensus 123 --~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilDPG 172 (270)
T 4hb7_A 123 --KYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLDPG 172 (270)
T ss_dssp --HTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECC
T ss_pred --HcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEeCC
Confidence 23322344566554322 1 1223456788985 36863
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=83.12 E-value=9.3 Score=35.26 Aligned_cols=68 Identities=12% Similarity=0.061 Sum_probs=50.1
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
..+.++.+.+.|+|.|.+ ||... .|..+.+.++.+++.+|++++.... ......+..+.++|+|.|.+
T Consensus 109 ~~~~~~~lieaGvd~I~i-dta~G-~~~~~~~~I~~ik~~~p~v~Vi~G~----v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 109 NEERVKALVEAGVDVLLI-DSSHG-HSEGVLQRIRETRAAYPHLEIIGGN----VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp CHHHHHHHHHTTCSEEEE-ECSCT-TSHHHHHHHHHHHHHCTTCEEEEEE----ECSHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHhCCCCEEEE-eCCCC-CCHHHHHHHHHHHHhcCCCceEeee----eCCHHHHHHHHHcCCCEEEE
Confidence 456678899999998876 44332 4567778899999999887776532 12345678889999999997
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=82.84 E-value=16 Score=30.62 Aligned_cols=55 Identities=11% Similarity=-0.011 Sum_probs=33.0
Q ss_pred cCEEEecCCccccCHHHHHHHHHHHHhhcCC--CeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 12 CYEISLGDTIGVGTPGTMRLMLEDVLTVIPA--DRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 12 ~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~--~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
++.+.+.| |+..... ...++.+++.+|+ +.+-+|.|+..... . -.+.++|++.+-
T Consensus 29 v~~~kv~~--~~f~~~G-~~~i~~l~~~~p~~~v~lD~kl~dip~t~-~--~~~~~~Gad~it 85 (216)
T 1q6o_A 29 VDIIEVGT--ILCVGEG-VRAVRDLKALYPHKIVLADAKIADAGKIL-S--RMCFEANADWVT 85 (216)
T ss_dssp CSEEEECH--HHHHHHC-THHHHHHHHHCTTSEEEEEEEECSCHHHH-H--HHHHHTTCSEEE
T ss_pred CCEEEECH--HHHHHhC-HHHHHHHHHhCCCCeEEEEEEecccHHHH-H--HHHHhCCCCEEE
Confidence 46676665 4332221 2357777887654 66788999753322 2 256688998875
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=82.83 E-value=8.2 Score=34.37 Aligned_cols=76 Identities=17% Similarity=0.137 Sum_probs=55.7
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCCCC----------ccCHHHHHHHHHHHHHhc--CCCeEEEeecC-Cc--CcHHHHH
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDTIG----------VGTPGTMRLMLEDVLTVI--PADRLAVHCHD-TY--GQALANI 233 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt~G----------~~~P~~~~~~~~~~~~~~--~~~~l~~H~Hn-~~--g~a~an~ 233 (327)
+++.+.+.++++.+.|+..|.|-|..+ +..++++.+.|+.+++.- ++..|..-+-. .. --++.-+
T Consensus 95 ~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~Ra 174 (287)
T 3b8i_A 95 NALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQRT 174 (287)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHHHH
Confidence 888999999999999999999999874 455667888888888764 33334433333 11 1367788
Q ss_pred HHHHHhcCcee
Q psy12516 234 LTAMEFGISVF 244 (327)
Q Consensus 234 l~a~~~G~~~v 244 (327)
.+-.++||+.|
T Consensus 175 ~ay~eAGAd~i 185 (287)
T 3b8i_A 175 LAYQEAGADGI 185 (287)
T ss_dssp HHHHHTTCSEE
T ss_pred HHHHHcCCCEE
Confidence 88889999865
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=82.78 E-value=26 Score=31.33 Aligned_cols=124 Identities=14% Similarity=0.127 Sum_probs=76.1
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCC-CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~-G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.+++.+.+.++.+.+.|+..|.+..-- -.+.+..+.++++.+++. + +.+++.+. .+.-.......++|++.+..
T Consensus 84 ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~--~--~~i~~s~g-~l~~e~l~~L~~ag~~~v~i 158 (348)
T 3iix_A 84 MTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKM--G--VAVTLSLG-EWPREYYEKWKEAGADRYLL 158 (348)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTT--S--CEEEEECC-CCCHHHHHHHHHHTCCEEEC
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhc--C--ceEEEecC-CCCHHHHHHHHHhCCCEEee
Confidence 478999999999999999999995322 124447888899988875 3 34444332 23334444455779999887
Q ss_pred ccccCCCCCCCCCCCCCccHHHHHHHHH---hCCCCCC---------CChhhHHHHHHHHHHh
Q psy12516 247 SIAGLGGCPYARGASGNVATEDLVYMLE---GMGIETG---------ADLTSLLRTGHYICGK 297 (327)
Q Consensus 247 s~~G~G~~p~~~g~~Gn~~~e~~~~~l~---~~g~~~~---------~d~~~l~~~~~~~~~~ 297 (327)
++-+.-.--+.. -.+..+.++++..++ +.|+.+. -+.+.+.+..+++.++
T Consensus 159 ~let~~~~~~~~-i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l 220 (348)
T 3iix_A 159 RHETANPVLHRK-LRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEH 220 (348)
T ss_dssp CCBCSCHHHHHH-HSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHH
T ss_pred eeeeCCHHHHHH-hCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhc
Confidence 777552100000 011227777766554 4665432 2566777777777664
|
| >1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus} | Back alignment and structure |
|---|
Probab=82.78 E-value=10 Score=34.25 Aligned_cols=77 Identities=17% Similarity=0.126 Sum_probs=53.4
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCCCC-----------ccCHHHHHHHHHHHHHhcCCCeEEEeecCC-cC-----cHHH
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDTIG-----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDT-YG-----QALA 231 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~-~g-----~a~a 231 (327)
+++.+.+.++++.+.|+..|.|-|..+ +...++..+.|+.+++...+.++-+-.-.| .. -++.
T Consensus 114 ~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~~ai~ 193 (318)
T 1zlp_A 114 GPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLEEGIR 193 (318)
T ss_dssp SHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHHHHHH
Confidence 788999999999999999999999873 333445666777777765222333333322 21 3567
Q ss_pred HHHHHHHhcCceee
Q psy12516 232 NILTAMEFGISVFD 245 (327)
Q Consensus 232 n~l~a~~~G~~~vd 245 (327)
-+.+-.++||+.|=
T Consensus 194 Ra~Ay~eAGAd~i~ 207 (318)
T 1zlp_A 194 RANLYKEAGADATF 207 (318)
T ss_dssp HHHHHHHTTCSEEE
T ss_pred HHHHHHHcCCCEEE
Confidence 77788899998753
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=82.53 E-value=4.5 Score=37.14 Aligned_cols=68 Identities=12% Similarity=0.081 Sum_probs=49.0
Q ss_pred HHHHHHHc--CcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 3 VASALYKM--GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 3 ~~~~~~~~--g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
.++.+.+. |++.+.+--+.| .|..+.+.++++++.+|++++....- +....+..+.++|++.|+++..
T Consensus 122 ~~~~l~~~~~g~~~i~i~~~~g--~~~~~~~~i~~lr~~~~~~~vi~g~v----~t~e~A~~a~~aGaD~I~v~~g 191 (351)
T 2c6q_A 122 QLEQILEAIPQVKYICLDVANG--YSEHFVEFVKDVRKRFPQHTIMAGNV----VTGEMVEELILSGADIIKVGIG 191 (351)
T ss_dssp HHHHHHHHCTTCCEEEEECSCT--TBHHHHHHHHHHHHHCTTSEEEEEEE----CSHHHHHHHHHTTCSEEEECSS
T ss_pred HHHHHHhccCCCCEEEEEecCC--CcHHHHHHHHHHHHhcCCCeEEEEeC----CCHHHHHHHHHhCCCEEEECCC
Confidence 45566676 899877532334 45667788999999997788876543 3456778899999999998643
|
| >3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A | Back alignment and structure |
|---|
Probab=82.34 E-value=27 Score=31.15 Aligned_cols=191 Identities=12% Similarity=0.100 Sum_probs=101.8
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcCC-CeeEEEe-cCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~~-~~~~~H~-h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
+.++.+.+.|+|.|.++=|+| .+|.++-.++++.+.+.... +++-.+. +++..-++..+..|-++
T Consensus 39 ~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~---------- 108 (307)
T 3s5o_A 39 ENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQV---------- 108 (307)
T ss_dssp HHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHT----------
T ss_pred HHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHc----------
Confidence 356778889999999999997 47788888888888877643 4444432 22333333333344444
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
|+|-+-+..+..- + -..+.++.++-++.+ +...++.+..|-
T Consensus 109 -------------------------------Gadavlv~~P~y~---~--~~~s~~~l~~~f~~i---a~a~~lPiilYn 149 (307)
T 3s5o_A 109 -------------------------------GADAAMVVTPCYY---R--GRMSSAALIHHYTKV---ADLSPIPVVLYS 149 (307)
T ss_dssp -------------------------------TCSEEEEECCCTT---G--GGCCHHHHHHHHHHH---HHHCSSCEEEEE
T ss_pred -------------------------------CCCEEEEcCCCcC---C--CCCCHHHHHHHHHHH---HhhcCCCEEEEe
Confidence 4444333211100 0 001222222223322 333567765442
Q ss_pred e-eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE-eecCCcCcHHHHHH
Q psy12516 157 S-CVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV-HCHDTYGQALANIL 234 (327)
Q Consensus 157 ~-~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~-H~Hn~~g~a~an~l 234 (327)
. ... ....+++.+.+++ + -...+.++|+.|- ..++.+++. ..+...+.+ -.+++ ..+
T Consensus 150 ~P~~t----g~~l~~~~~~~La----~-~pnIvgiKdssgd--~~~~~~~~~----~~~~~~f~v~~G~d~------~~l 208 (307)
T 3s5o_A 150 VPANT----GLDLPVDAVVTLS----Q-HPNIVGMXDSGGD--VTRIGLIVH----KTRKQDFQVLAGSAG------FLM 208 (307)
T ss_dssp CHHHH----SCCCCHHHHHHHH----T-STTEEEEEECSCC--HHHHHHHHH----HTTTSSCEEEESSGG------GHH
T ss_pred CCccc----CCCCCHHHHHHHh----c-CCCEEEEEcCCCC--HHHHHHHHH----hccCCCeEEEeCcHH------HHH
Confidence 1 011 1246777776654 3 3578999999884 344444433 332123443 33333 256
Q ss_pred HHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 235 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 235 ~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
.++..|++. .+. ..+|.--+.++...+.
T Consensus 209 ~~l~~G~~G---~is----------~~an~~P~~~~~l~~a 236 (307)
T 3s5o_A 209 ASYALGAVG---GVC----------ALANVLGAQVCQLERL 236 (307)
T ss_dssp HHHHHTCCE---EEC----------GGGGTCHHHHHHHHHH
T ss_pred HHHHcCCCE---EEe----------chhhhhHHHHHHHHHH
Confidence 777888753 333 3557777777766554
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=82.34 E-value=12 Score=33.52 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=54.0
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCC-----------ccCHHHHHHHHHHHHHhcCCCeEEEeecCCc------CcHH
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIG-----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDTY------GQAL 230 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----------~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~------g~a~ 230 (327)
.+++.+.+.++++.+.|+..|.|-|..+ +....+..+.++..++...+.++-+-.-.|- --++
T Consensus 91 ~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ai 170 (295)
T 1xg4_A 91 SSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDAAI 170 (295)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHHHH
Confidence 4788999999999999999999999873 3334455666777776642223333333221 2357
Q ss_pred HHHHHHHHhcCceee
Q psy12516 231 ANILTAMEFGISVFD 245 (327)
Q Consensus 231 an~l~a~~~G~~~vd 245 (327)
.-+.+..++||+.|=
T Consensus 171 ~ra~ay~eAGAd~i~ 185 (295)
T 1xg4_A 171 ERAQAYVEAGAEMLF 185 (295)
T ss_dssp HHHHHHHHTTCSEEE
T ss_pred HHHHHHHHcCCCEEE
Confidence 778888899998753
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=82.31 E-value=38 Score=32.88 Aligned_cols=69 Identities=12% Similarity=0.021 Sum_probs=51.7
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
+.++.+.++|+|.|.+ ||+ |.. ..+.+.++++++.+|++++..=--.+.. .+..-+++|++.+.+++++
T Consensus 284 eR~~aLv~AGvD~ivi-D~ahGhs--~~v~~~i~~ik~~~p~~~viaGNVaT~e----~a~~Li~aGAD~vkVGiGp 353 (556)
T 4af0_A 284 DRLKLLAEAGLDVVVL-DSSQGNS--VYQIEFIKWIKQTYPKIDVIAGNVVTRE----QAAQLIAAGADGLRIGMGS 353 (556)
T ss_dssp HHHHHHHHTTCCEEEE-CCSCCCS--HHHHHHHHHHHHHCTTSEEEEEEECSHH----HHHHHHHHTCSEEEECSSC
T ss_pred HHHHHHHhcCCcEEEE-ecccccc--HHHHHHHHHHHhhCCcceEEeccccCHH----HHHHHHHcCCCEEeecCCC
Confidence 5678899999998866 666 553 4467789999999998887776666653 2344558999999987764
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=82.29 E-value=23 Score=31.32 Aligned_cols=45 Identities=9% Similarity=0.049 Sum_probs=22.6
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 169 PPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+.++..++++.+.+.|+|.+.+ +-..-..+++.+.+.++.+.+..
T Consensus 80 ~t~~ai~la~~A~~~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~ 125 (294)
T 2ehh_A 80 ATHEAVHLTAHAKEVGADGALVVVPYYNKPTQRGLYEHFKTVAQEV 125 (294)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4455555666666666654333 22222335555555555555544
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=82.25 E-value=27 Score=31.12 Aligned_cols=192 Identities=12% Similarity=0.092 Sum_probs=102.3
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcCC-CeeEEEe-cCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~~-~~~~~H~-h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
++++.+.+.|++.|.++-|+| .+|+++-.++++...+...+ +++-.+. .++..-++..+..|-++|++.+=+.-.
T Consensus 37 ~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~Gadavlv~~P 116 (306)
T 1o5k_A 37 RLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLGANGVLVVTP 116 (306)
T ss_dssp HHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhcCCCEEEECCC
Confidence 456778899999999999985 57788888888877766542 4443322 122223333333344444444332222
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEE
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYI 156 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l 156 (327)
.... ++.+.+ ++-++.+ +...++.+..|-
T Consensus 117 ~y~~----------~s~~~l--------------------------------------~~~f~~v---a~a~~lPiilYn 145 (306)
T 1o5k_A 117 YYNK----------PTQEGL--------------------------------------YQHYKYI---SERTDLGIVVYN 145 (306)
T ss_dssp CSSC----------CCHHHH--------------------------------------HHHHHHH---HTTCSSCEEEEE
T ss_pred CCCC----------CCHHHH--------------------------------------HHHHHHH---HHhCCCCEEEEe
Confidence 1110 111222 2222222 223456665432
Q ss_pred eeeccCCC--CCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHH
Q psy12516 157 SCVVGCPY--EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANIL 234 (327)
Q Consensus 157 ~~~~g~~~--~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l 234 (327)
.|. ....+++.+.++++ + -...+.++|+.|- ..++.++++......++..+ +-..++ ..+
T Consensus 146 -----~P~~tg~~l~~~~~~~La~---~-~pnIvgiKdssgd--~~~~~~~~~~~~~~~~~f~v-~~G~d~------~~l 207 (306)
T 1o5k_A 146 -----VPGRTGVNVLPETAARIAA---D-LKNVVGIXEANPD--IDQIDRTVSLTKQARSDFMV-WSGNDD------RTF 207 (306)
T ss_dssp -----CHHHHSCCCCHHHHHHHHH---H-CTTEEEEEECCCC--HHHHHHHHHHHHHHCTTCEE-EESSGG------GHH
T ss_pred -----CccccCcCCCHHHHHHHHH---h-CCCEEEEeCCCCC--HHHHHHHHHhcCCCCCcEEE-EECcHH------HHH
Confidence 121 12467777777763 2 2579999999985 45666666554431113222 333332 246
Q ss_pred HHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 235 TAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 235 ~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
.++..|++.+ +. ..+|...+.++...+.
T Consensus 208 ~~l~~G~~G~---is----------~~an~~P~~~~~l~~a 235 (306)
T 1o5k_A 208 YLLCAGGDGV---IS----------VVSNVAPKQMVELCAE 235 (306)
T ss_dssp HHHHHTCCEE---EE----------SGGGTCHHHHHHHHHH
T ss_pred HHHHCCCCEE---Ee----------cHHHhhHHHHHHHHHH
Confidence 6677887643 22 3557777777766654
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=82.12 E-value=11 Score=31.70 Aligned_cols=71 Identities=15% Similarity=0.234 Sum_probs=49.4
Q ss_pred HHHHHHHcCcCEEEecCCCCccCH-HHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCC
Q psy12516 176 VATALYKMGCYEISLGDTIGVGTP-GTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 252 (327)
Q Consensus 176 ~~~~~~~~g~~~i~l~Dt~G~~~P-~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G 252 (327)
.++.+.+.|+|.+.+- +.-...| ..+.++++.+++.+|+.++..-+|+ ...+..+.++|++.|-++..|..
T Consensus 80 ~i~~~~~~Gad~v~l~-~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t-----~~e~~~~~~~G~d~i~~~~~g~t 151 (223)
T 1y0e_A 80 EVDELIESQCEVIALD-ATLQQRPKETLDELVSYIRTHAPNVEIMADIAT-----VEEAKNAARLGFDYIGTTLHGYT 151 (223)
T ss_dssp HHHHHHHHTCSEEEEE-CSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred HHHHHHhCCCCEEEEe-eecccCcccCHHHHHHHHHHhCCCceEEecCCC-----HHHHHHHHHcCCCEEEeCCCcCc
Confidence 3455778899988764 2223345 4667889999998887777765553 34567788999999876655543
|
| >2hmc_A AGR_L_411P, dihydrodipicolinate synthase; alpha-beta barrel (TIM barrel), structural genomics, PSI-2, structure initiative; HET: MSE; 1.90A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=82.04 E-value=13 Score=34.02 Aligned_cols=80 Identities=15% Similarity=0.049 Sum_probs=63.7
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCCCeEEEee-cCCcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPADRLAVHC-HDTYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~~~l~~H~-Hn~~g~a~an~l~a~~~G~ 241 (327)
+..|.+.+.++++.+.+.|++.|.++-|+| .+++++-.++++. ..-+.++|..++ +|+..-++..+..|.++|+
T Consensus 42 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~--~~~grvpViaGvg~~st~eai~la~~A~~~Ga 119 (344)
T 2hmc_A 42 RTPDFDALVRKGKELIADGMSAVVYCGSMGDWPLLTDEQRMEGVER--LVKAGIPVIVGTGAVNTASAVAHAVHAQKVGA 119 (344)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCCEEESSGGGTGGGSCHHHHHHHHHH--HHHTTCCEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred CCcCHHHHHHHHHHHHHcCCCEEEeCccCcChhhCCHHHHHHHHHH--HhCCCCcEEEecCCCCHHHHHHHHHHHHhcCC
Confidence 579999999999999999999999999999 4788887777776 222345666655 4667778888899999999
Q ss_pred ceeeec
Q psy12516 242 SVFDSS 247 (327)
Q Consensus 242 ~~vd~s 247 (327)
+.+=..
T Consensus 120 davlv~ 125 (344)
T 2hmc_A 120 KGLMVI 125 (344)
T ss_dssp SEEEEC
T ss_pred CEEEEC
Confidence 976543
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=81.96 E-value=12 Score=34.35 Aligned_cols=124 Identities=17% Similarity=0.090 Sum_probs=75.7
Q ss_pred hcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeecc---C-----------------------C----C--C-C----CCC
Q psy12516 127 INCTIEESLERFSEVVSTALTNGIRVRGYISCVVG---C-----------------------P----Y--E-G----AVP 169 (327)
Q Consensus 127 l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g---~-----------------------~----~--~-~----r~~ 169 (327)
++...++.++..+++++.+|+.|-++.+.|... | . | . . . ..+
T Consensus 71 ~~i~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt 149 (363)
T 3l5l_A 71 AGIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHA-GRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMT 149 (363)
T ss_dssp CBCSSHHHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCSBCCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECC
T ss_pred ceecCHHHHHHHHHHHHHHHhcCCEEEEEeccC-CccccccccccccccccccccCCCcccCCCCCccCCCCCCCCccCC
Confidence 344456668999999999999999887776541 1 0 0 0 0 0 122
Q ss_pred hHH-------HHHHHHHHHHcCcCEEEecCCC-------------------CccC---HHHHHHHHHHHHHhcC-CCeEE
Q psy12516 170 PHN-------VTRVATALYKMGCYEISLGDTI-------------------GVGT---PGTMRLMLEDVLTVIP-ADRLA 219 (327)
Q Consensus 170 ~e~-------l~~~~~~~~~~g~~~i~l~Dt~-------------------G~~~---P~~~~~~~~~~~~~~~-~~~l~ 219 (327)
.++ +.+.++.+.++|.|.|.|--.. |... ++.+.++++.+|+.++ +.+|+
T Consensus 150 ~~eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~ 229 (363)
T 3l5l_A 150 LDDIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLT 229 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEE
Confidence 333 4444556667899988774333 3221 2346788899999885 45677
Q ss_pred EeecC----CcC-cHHHH----HHHHHHhcCceeeeccccC
Q psy12516 220 VHCHD----TYG-QALAN----ILTAMEFGISVFDSSIAGL 251 (327)
Q Consensus 220 ~H~Hn----~~g-~a~an----~l~a~~~G~~~vd~s~~G~ 251 (327)
+-..- +.| ..... +....++|+++|+.+..+.
T Consensus 230 vRis~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~ 270 (363)
T 3l5l_A 230 ARFGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFT 270 (363)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcc
Confidence 64432 123 33333 3334578999999987543
|
| >2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A | Back alignment and structure |
|---|
Probab=81.80 E-value=8.6 Score=34.16 Aligned_cols=128 Identities=11% Similarity=0.143 Sum_probs=81.9
Q ss_pred CCChHHHHHHHHHHHHcCcCEEEe----cCCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCc
Q psy12516 167 AVPPHNVTRVATALYKMGCYEISL----GDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGIS 242 (327)
Q Consensus 167 r~~~e~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~ 242 (327)
+.+++++.+-+....++|+..+-+ .|-.....|+.+.+++..+|+..|++.|.+-+--..+....-=++.++..-+
T Consensus 30 PvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~~~~Pe 109 (282)
T 2y7e_A 30 PITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPLALKPE 109 (282)
T ss_dssp CCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGGGGCCS
T ss_pred CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHhhcCCC
Confidence 468899999999999999875332 3434568899999999999988888777776643322223333333333333
Q ss_pred eeeeccccCCCCCCCCC--CCCCccHHHHHHHHHhCCCCCC---CChhhHHHHHHHHHHh
Q psy12516 243 VFDSSIAGLGGCPYARG--ASGNVATEDLVYMLEGMGIETG---ADLTSLLRTGHYICGK 297 (327)
Q Consensus 243 ~vd~s~~G~G~~p~~~g--~~Gn~~~e~~~~~l~~~g~~~~---~d~~~l~~~~~~~~~~ 297 (327)
... .-+|...|... ......+++++..+++.|+... +|...|..+.+++++=
T Consensus 110 ~as---l~~gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~G 166 (282)
T 2y7e_A 110 MAT---LNAGTLNFGDDIFINHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIKKG 166 (282)
T ss_dssp EEE---EECCCEEETTEEECCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHTT
T ss_pred EEE---ecccccccccccccCCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHcC
Confidence 322 22332111110 0223568889999999888765 7899999888877663
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=81.74 E-value=15 Score=33.55 Aligned_cols=144 Identities=12% Similarity=0.062 Sum_probs=78.5
Q ss_pred HHHHHHHhhhhhcccCcchhhhhhhh-hHHHHHHhhcCChHHHHHHHHHHHHHHHH-cCCeEEEEEeeeccCCCCCCCCh
Q psy12516 93 TEDLVYMLEGKSMQCGVKEIAVFASA-SEMFSKRNINCTIEESLERFSEVVSTALT-NGIRVRGYISCVVGCPYEGAVPP 170 (327)
Q Consensus 93 ~e~v~~~l~~~~~~~Gid~i~l~~~~-sd~~~~~~l~~s~ee~i~~~~~~v~~a~~-~Gi~v~~~l~~~~g~~~~~r~~~ 170 (327)
++++..+.+ ...+.|+|.+.+-... +....+-..+.+.....+.+.++++..++ .++.|.+-+. .|..+ ..+.
T Consensus 69 p~~~~~aA~-~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR--~g~~~--~~~~ 143 (350)
T 3b0p_A 69 PKSLAEAAR-IGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMR--LGLEG--KETY 143 (350)
T ss_dssp HHHHHHHHH-HHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEE--SCBTT--CCCH
T ss_pred HHHHHHHHH-HHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEe--cCcCc--cccH
Confidence 455555433 3455677876654321 11122333444443335556666666555 3666654333 22111 2345
Q ss_pred HHHHHHHHHHHHcCcCEEEecCCCC--ccCHH-------HHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhc
Q psy12516 171 HNVTRVATALYKMGCYEISLGDTIG--VGTPG-------TMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFG 240 (327)
Q Consensus 171 e~l~~~~~~~~~~g~~~i~l~Dt~G--~~~P~-------~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G 240 (327)
+...++++.+.+.|++.|.+..... ..++. .-.+++..+++.+|.+||..=. |.. ...+..+++ |
T Consensus 144 ~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianG----gI~s~eda~~~l~-G 218 (350)
T 3b0p_A 144 RGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNG----GIRSLEEALFHLK-R 218 (350)
T ss_dssp HHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEES----SCCSHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEEC----CcCCHHHHHHHHh-C
Confidence 6788999999999999999866431 11221 1246788888888667777633 332 334444554 8
Q ss_pred Cceeee
Q psy12516 241 ISVFDS 246 (327)
Q Consensus 241 ~~~vd~ 246 (327)
+|.|-.
T Consensus 219 aD~V~i 224 (350)
T 3b0p_A 219 VDGVML 224 (350)
T ss_dssp SSEEEE
T ss_pred CCEEEE
Confidence 776543
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=81.70 E-value=27 Score=31.05 Aligned_cols=79 Identities=14% Similarity=0.130 Sum_probs=44.6
Q ss_pred HHHHHHHHcCCeEEEEEeeec-cCCCCC----CCC------hHHHHHHHHHHHHcCcCEEEecCCCCcc-CHHHHHHHHH
Q psy12516 140 EVVSTALTNGIRVRGYISCVV-GCPYEG----AVP------PHNVTRVATALYKMGCYEISLGDTIGVG-TPGTMRLMLE 207 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~-g~~~~~----r~~------~e~l~~~~~~~~~~g~~~i~l~Dt~G~~-~P~~~~~~~~ 207 (327)
++.+.+++.|..+. ++..- |.|..- .++ .+++.+.++.+.++|++.|.|==-.|.. +.++-.++++
T Consensus 137 ~m~~v~a~~~~~vV--lmh~~eG~p~tm~~~~~y~dv~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf~kt~~~n~~ll~ 214 (294)
T 2dqw_A 137 RMVALAARHGVAAV--VMHMPVPDPATMMAHARYRDVVAEVKAFLEAQARRALSAGVPQVVLDPGFGFGKLLEHNLALLR 214 (294)
T ss_dssp HHHHHHHHHTCEEE--EECCSSSCTTTGGGGCCCSSHHHHHHHHHHHHHHHHHHTTCSCEEEECCTTSSCCHHHHHHHHH
T ss_pred HHHHHHHHhCCCEE--EEcCCCCCCccccccCccccHHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCcccCHHHHHHHHH
Confidence 45666777788764 33322 333210 111 3467777888889998866654444543 3666777777
Q ss_pred HHHHhc-CCCeEEE
Q psy12516 208 DVLTVI-PADRLAV 220 (327)
Q Consensus 208 ~~~~~~-~~~~l~~ 220 (327)
.+++-. ++.|+-+
T Consensus 215 ~l~~~~~~g~Pvl~ 228 (294)
T 2dqw_A 215 RLDEIVALGHPVLV 228 (294)
T ss_dssp THHHHHTTSSCBEE
T ss_pred HHHHHhcCCCCEEE
Confidence 775432 3444444
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=81.44 E-value=24 Score=29.93 Aligned_cols=69 Identities=13% Similarity=0.096 Sum_probs=42.9
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCC---CCccCHHHHHHHHHHHHHhcC-CCeEEEeecCCcCcHHHHHHHHHHhcCce
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDT---IGVGTPGTMRLMLEDVLTVIP-ADRLAVHCHDTYGQALANILTAMEFGISV 243 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt---~G~~~P~~~~~~~~~~~~~~~-~~~l~~H~Hn~~g~a~an~l~a~~~G~~~ 243 (327)
.+.+.+.++++.+.++|+|.| ...| .|-.+++.++. +++..+ .+||-.=.=-. ....++..+++||++
T Consensus 129 l~~~~~~~~a~~a~eaGad~I-~tstg~~~gga~~~~i~~----v~~~v~~~ipVia~GGI~---t~~da~~~l~aGA~~ 200 (225)
T 1mzh_A 129 LNEEEIKKAVEICIEAGADFI-KTSTGFAPRGTTLEEVRL----IKSSAKGRIKVKASGGIR---DLETAISMIEAGADR 200 (225)
T ss_dssp CCHHHHHHHHHHHHHHTCSEE-ECCCSCSSSCCCHHHHHH----HHHHHTTSSEEEEESSCC---SHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EECCCCCCCCCCHHHHHH----HHHHhCCCCcEEEECCCC---CHHHHHHHHHhCchH
Confidence 577889999999999999999 3333 23345555444 444332 34544422111 136677778899996
Q ss_pred e
Q psy12516 244 F 244 (327)
Q Consensus 244 v 244 (327)
|
T Consensus 201 i 201 (225)
T 1mzh_A 201 I 201 (225)
T ss_dssp E
T ss_pred H
Confidence 5
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=81.35 E-value=32 Score=33.61 Aligned_cols=127 Identities=13% Similarity=0.139 Sum_probs=84.8
Q ss_pred EEEecccCCCCCCCCCCccCCCcHHHHHHHhhhh---hcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHH
Q psy12516 70 VFDSSIAGLGGCPYARGASGNVATEDLVYMLEGK---SMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTAL 146 (327)
Q Consensus 70 ~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~---~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~ 146 (327)
.|=.+++..|..- ...|+...+++....+.+ ..+.|+|.+.+- ..++ +.+++.++..++
T Consensus 101 ~VAGsiGP~g~~~---~~~~~~~~~e~~~~~~~qi~~l~~~gvD~l~~E-T~~~--------------~~Ea~aa~~a~~ 162 (566)
T 1q7z_A 101 LVFGDIGPTGELP---YPLGSTLFEEFYENFRETVEIMVEEGVDGIIFE-TFSD--------------ILELKAAVLAAR 162 (566)
T ss_dssp EEEEEECCCSCCB---TTTSSBCHHHHHHHHHHHHHHHHHTTCSEEEEE-EECC--------------HHHHHHHHHHHH
T ss_pred eEEEeCCCcccCC---CCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEe-ccCC--------------HHHHHHHHHHHH
Confidence 7888888888631 134667788887766543 357889987543 2222 556777777777
Q ss_pred H--cCCeEEEEEeeeccCCCCCC-CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEEee
Q psy12516 147 T--NGIRVRGYISCVVGCPYEGA-VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHC 222 (327)
Q Consensus 147 ~--~Gi~v~~~l~~~~g~~~~~r-~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~ 222 (327)
+ .++.+-+.++ + ...++ .+.+.+.+.+..+...+++.|.+--+ ..|+.+...++.+++... .++.++.
T Consensus 163 ~~~~~~Pv~vS~t--~--~~~g~~~~G~~~~~~~~~l~~~~~~avG~NC~---~gp~~~~~~l~~l~~~~~-~p~~vyP 233 (566)
T 1q7z_A 163 EVSRDVFLIAHMT--F--DEKGRSLTGTDPANFAITFDELDIDALGINCS---LGPEEILPIFQELSQYTD-KFLVVEP 233 (566)
T ss_dssp HHCSSSCEEEEEC--C--CTTSCCTTSCCHHHHHHHHHTSSCSEEEEESS---SCHHHHHHHHHHHHHTCC-SEEEEEC
T ss_pred HhCCCCcEEEEEE--E--cCCCeeCCCCcHHHHHHHhhccCCCEEEEeCC---CCHHHHHHHHHHHHhcCC-CEEEEEc
Confidence 6 4777654333 2 23333 45667777888888888888776544 349999999999986543 5777765
|
| >2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} | Back alignment and structure |
|---|
Probab=81.14 E-value=22 Score=31.34 Aligned_cols=45 Identities=11% Similarity=0.034 Sum_probs=23.2
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 169 PPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+.++..++++.+.+.|+|.+.+ +-..-..+++.+.+.++.+.+..
T Consensus 80 ~t~~ai~la~~a~~~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~ 125 (289)
T 2yxg_A 80 CTEEAIELSVFAEDVGADAVLSITPYYNKPTQEGLRKHFGKVAESI 125 (289)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcCCCEEEECCCCCCCCCHHHHHHHHHHHHHhc
Confidence 4455566666666666664333 22222345555555555555554
|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
Probab=81.05 E-value=4.8 Score=34.58 Aligned_cols=19 Identities=16% Similarity=0.394 Sum_probs=16.9
Q ss_pred CCCccHHHHHHHHHhCCCC
Q psy12516 261 SGNVATEDLVYMLEGMGIE 279 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~~g~~ 279 (327)
.|..+.+.++..|++.||+
T Consensus 222 ~G~id~~~~~~~L~~~gy~ 240 (278)
T 1i60_A 222 QGAIDLDAHLSALKEIGFS 240 (278)
T ss_dssp SSSSCHHHHHHHHHHTTCC
T ss_pred CCCCcHHHHHHHHHHcCCC
Confidence 5899999999999998775
|
| >4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A | Back alignment and structure |
|---|
Probab=80.95 E-value=4.3 Score=37.01 Aligned_cols=67 Identities=18% Similarity=0.308 Sum_probs=42.4
Q ss_pred HHHHHHHHHHcCcCEEEecCCCCc---cCHHHHHHHH----HHHHHhcCCCeEEEeecCCcCcHHHHHHH-HHHhcCcee
Q psy12516 173 VTRVATALYKMGCYEISLGDTIGV---GTPGTMRLML----EDVLTVIPADRLAVHCHDTYGQALANILT-AMEFGISVF 244 (327)
Q Consensus 173 l~~~~~~~~~~g~~~i~l~Dt~G~---~~P~~~~~~~----~~~~~~~~~~~l~~H~Hn~~g~a~an~l~-a~~~G~~~v 244 (327)
+.++++...++|+|.|.+.|+.|. ++|+...+++ +++.+.+...+ .+|+.-+.+. .+. -.+.|++.+
T Consensus 192 ~~~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~~-iih~~g~~~~----~l~~~~~~g~d~i 266 (348)
T 4ay7_A 192 SIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSVT-VLHICGNVNP----ILSDMADCGFEGL 266 (348)
T ss_dssp HHHHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSSEE-EEECCSCCHH----HHHHHHTSCCSEE
T ss_pred HHHHHHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccCCc-EEEecCCcHH----HHHHHHHhccccc
Confidence 344555566789999999999774 8998887764 44555556543 4677644322 222 235677765
|
| >3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A | Back alignment and structure |
|---|
Probab=80.58 E-value=19 Score=32.09 Aligned_cols=97 Identities=14% Similarity=0.126 Sum_probs=69.3
Q ss_pred HHHHHHHHcCcCEEEecCCcc---ccCHHHHHHHHHHHHhhcC-CCeeEEEe-cCccchHHHHHHHHHHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G---~~~p~~~~~~~~~~~~~~~-~~~~~~H~-h~~~g~~~~~~~~a~~aG~~~id~~~~ 76 (327)
++++.+.+.|+|.|.++-|+| .+|.++-.++++...+... .+++-.+. +++..-++..+..|-++|++.+=+.-.
T Consensus 40 ~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Gadavlv~~P 119 (304)
T 3l21_A 40 RLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEGAHGLLVVTP 119 (304)
T ss_dssp HHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHTCSEEEEECC
T ss_pred HHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCC
Confidence 456788899999999999996 4678888888888877665 37887776 577777788888888999998776544
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhcccC
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSMQCG 108 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~G 108 (327)
.... ++.+.++..++..+-.++
T Consensus 120 ~y~~----------~s~~~l~~~f~~va~a~~ 141 (304)
T 3l21_A 120 YYSK----------PPQRGLQAHFTAVADATE 141 (304)
T ss_dssp CSSC----------CCHHHHHHHHHHHHTSCS
T ss_pred CCCC----------CCHHHHHHHHHHHHHhcC
Confidence 3321 245666665554433333
|
| >3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A | Back alignment and structure |
|---|
Probab=80.39 E-value=21 Score=30.88 Aligned_cols=160 Identities=13% Similarity=0.212 Sum_probs=96.6
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccC----------CC
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASG----------NV 91 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~g----------n~ 91 (327)
|-..|.+.++.. .+.+..+. -|.-- -=.+.+-+...+...-.+|.+-++.-|.--+-...+| ..
T Consensus 95 GaGDP~Q~~~Va-~IA~~~~P----~HVNQ-VFtgag~trg~L~~~~T~VNaLVSPTG~~G~VkISTGp~Sas~~~~~~V 168 (275)
T 3m6y_A 95 GAGDNRQAAVVA-EIAKHYPG----SHINQ-VFPSVGATRANLGEKDSWINSLVSPTGKVGYVNISTGPISAAGEEKAIV 168 (275)
T ss_dssp CTTCGGGHHHHH-HHTTTCCC----SEECC-BGGGHHHHHHHHTTCCCEEEEEEBCCSSTTEEECCCSTTGGGSSSCCEE
T ss_pred CCCCHHHHHHHH-HHHHhcCC----Ccccc-cccchHHHHhhcCCCccEEEEEEcCCCCcceEEeccCCCccccCCCcee
Confidence 446777766533 33333321 12222 2233444555665556788888877765222222233 35
Q ss_pred cHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChH
Q psy12516 92 ATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPH 171 (327)
Q Consensus 92 ~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e 171 (327)
+.|..+.+++.+ |.+.+..| +..- ...++.++.+.+.|.+.|+-.+ . .+-.+.+
T Consensus 169 ~vetAiaml~dm----G~~SvKff-PM~G-----------l~~leEl~avAkAca~~g~~lE-----P-----TGGIdl~ 222 (275)
T 3m6y_A 169 PIKTAIALVRDM----GGNSLKYF-PMKG-----------LAHEEEYRAVAKACAEEGFALE-----P-----TGGIDKE 222 (275)
T ss_dssp EHHHHHHHHHHH----TCCEEEEC-CCTT-----------TTTHHHHHHHHHHHHHHTCEEE-----E-----BSSCCTT
T ss_pred eHHHHHHHHHHc----CCCeeeEe-ecCC-----------cccHHHHHHHHHHHHHcCceEC-----C-----CCCccHh
Confidence 566666666544 44545443 1110 0115677888888888999332 1 2358889
Q ss_pred HHHHHHHHHHHcCcCEE----E---ecCCCCccCHHHHHHHHHHHHHhc
Q psy12516 172 NVTRVATALYKMGCYEI----S---LGDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i----~---l~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
.+.++.+.+.++|+..| | |--.+|.-.|+++++++..+++-+
T Consensus 223 Nf~~I~~i~l~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~l~ 271 (275)
T 3m6y_A 223 NFETIVRIALEANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKKLV 271 (275)
T ss_dssp THHHHHHHHHHTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999998743 2 335679999999999999998754
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=80.37 E-value=15 Score=32.37 Aligned_cols=78 Identities=13% Similarity=0.139 Sum_probs=55.5
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCC-----ccCHHHHHHHHHHHHHhcC--CCeEEEeecCCc-------------C
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIG-----VGTPGTMRLMLEDVLTVIP--ADRLAVHCHDTY-------------G 227 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G-----~~~P~~~~~~~~~~~~~~~--~~~l~~H~Hn~~-------------g 227 (327)
.+++.+.+.++++.+.|+..|.|-|..+ +..++++.+.++.+++... ++++-+-.-.|- -
T Consensus 89 ~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~ 168 (275)
T 2ze3_A 89 HAPEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLA 168 (275)
T ss_dssp SSHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHH
Confidence 4788999999999999999999999873 4566778888888887632 234444444332 1
Q ss_pred cHHHHHHHHHHhcCceee
Q psy12516 228 QALANILTAMEFGISVFD 245 (327)
Q Consensus 228 ~a~an~l~a~~~G~~~vd 245 (327)
-++.-+.+-.++||+.|=
T Consensus 169 ~ai~Ra~ay~eAGAd~i~ 186 (275)
T 2ze3_A 169 ETVRRGQAYADAGADGIF 186 (275)
T ss_dssp HHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHCCCCEEE
Confidence 245566677788998653
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.26 E-value=19 Score=31.95 Aligned_cols=116 Identities=13% Similarity=0.032 Sum_probs=61.3
Q ss_pred CCChHHHH---HHHHHHHHcCcCEEEec--CCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc-HHHHHHHHHHhc
Q psy12516 167 AVPPHNVT---RVATALYKMGCYEISLG--DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ-ALANILTAMEFG 240 (327)
Q Consensus 167 r~~~e~l~---~~~~~~~~~g~~~i~l~--Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~-a~an~l~a~~~G 240 (327)
.++.+++. +-++.+.++|+|.|.+. +.-|......+.+++.... ..++.||--=|.=- .....-..+..|
T Consensus 104 ~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~----~l~vTFHRAFD~~~d~~~Ale~Li~lG 179 (287)
T 3iwp_A 104 LYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICR----PLPVTFHRAFDMVHDPMAALETLLTLG 179 (287)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHHT----TSCEEECGGGGGCSCHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcC----CCcEEEECchhccCCHHHHHHHHHHcC
Confidence 45555444 44566778899988776 3556677777777776543 35677776533211 222233334559
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh-CC--CCCCCChhhHHHHHH
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG-MG--IETGADLTSLLRTGH 292 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~-~g--~~~~~d~~~l~~~~~ 292 (327)
+++|=+|=. . |-+ -.|..-+.+++..... .- ..-|++.+.+.++.+
T Consensus 180 vdrILTSG~---~-~~a--~~Gl~~Lk~Lv~~a~~rI~ImaGGGV~~~Ni~~l~~ 228 (287)
T 3iwp_A 180 FERVLTSGC---D-SSA--LEGLPLIKRLIEQAKGRIVVMPGGGITDRNLQRILE 228 (287)
T ss_dssp CSEEEECTT---S-SST--TTTHHHHHHHHHHHTTSSEEEECTTCCTTTHHHHHH
T ss_pred CCEEECCCC---C-CCh--HHhHHHHHHHHHHhCCCCEEEECCCcCHHHHHHHHH
Confidence 988866311 1 211 1233333343333221 11 134678877776654
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=80.09 E-value=6 Score=35.19 Aligned_cols=71 Identities=13% Similarity=0.216 Sum_probs=49.4
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecC-CC--Cc---cCHHH---HHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHh
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGD-TI--GV---GTPGT---MRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF 239 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~D-t~--G~---~~P~~---~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~ 239 (327)
+++...+.+++..+.|+|.|-+.- ++ |. ...++ +...++.+++.+ +++|.+++.+- ....+|+++
T Consensus 36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT~~~-----~va~aAl~a 109 (282)
T 1aj0_A 36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDTSKP-----EVIRESAKV 109 (282)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCH-----HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeCCCH-----HHHHHHHHc
Confidence 578888999999999999988765 22 21 11234 444555555554 57899987653 355778889
Q ss_pred cCceee
Q psy12516 240 GISVFD 245 (327)
Q Consensus 240 G~~~vd 245 (327)
|++.|.
T Consensus 110 Ga~iIN 115 (282)
T 1aj0_A 110 GAHIIN 115 (282)
T ss_dssp TCCEEE
T ss_pred CCCEEE
Confidence 999985
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 327 | ||||
| d1rqba2 | 303 | c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N- | 9e-24 | |
| d1rqba2 | 303 | c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N- | 1e-14 | |
| d1sr9a2 | 310 | c.1.10.5 (A:61-370) 2-isopropylmalate synthase Leu | 1e-21 | |
| d1sr9a2 | 310 | c.1.10.5 (A:61-370) 2-isopropylmalate synthase Leu | 2e-10 | |
| d1nvma2 | 289 | c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolas | 1e-15 | |
| d1nvma2 | 289 | c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolas | 1e-08 |
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Score = 96.9 bits (240), Expect = 9e-24
Identities = 38/198 (19%), Positives = 76/198 (38%), Gaps = 15/198 (7%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
M + + + ++ R ++ + E ++ F + + G
Sbjct: 87 MLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHA 146
Query: 165 EGAV--------PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVL-TVIPA 215
+G + ++A L MG I+L D + P +++ + T
Sbjct: 147 QGTICYTISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQK 206
Query: 216 DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275
++ +HCH T G +++ A+E G+ V D++I+ + P G+ TE + MLEG
Sbjct: 207 TQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEG 260
Query: 276 MGIETGADLTSLLRTGHY 293
G T D L + +
Sbjct: 261 TGYTTNLDYDRLHKIRDH 278
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Length = 303 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Score = 71.5 bits (174), Expect = 1e-14
Identities = 30/125 (24%), Positives = 55/125 (44%), Gaps = 8/125 (6%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVL-TVIPADRLAVHCHDTYGQALAN 59
+K+A L MG I+L D + P +++ + T ++ +HCH T G +
Sbjct: 164 VKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVS 223
Query: 60 ILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASAS 119
++ A+E G+ V D++I+ + P G+ TE + MLEG + +
Sbjct: 224 LMKAIEAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRLHK-IR 276
Query: 120 EMFSK 124
+ F
Sbjct: 277 DHFKA 281
|
| >d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 2-isopropylmalate synthase LeuA, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 91.2 bits (225), Expect = 1e-21
Identities = 26/193 (13%), Positives = 53/193 (27%), Gaps = 9/193 (4%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
+ + ++ + + + E + R G
Sbjct: 106 VHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTGTEL 165
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA---VH 221
E A + A +L T+ + TP +E + + +H
Sbjct: 166 EYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLH 225
Query: 222 CHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETG 281
H+ G A+A G + + G G +GNV L L G++
Sbjct: 226 PHNDRGTAVAAAELGFAAGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQ 279
Query: 282 ADLTSLLRTGHYI 294
D +++ +
Sbjct: 280 IDFSNIDEIRRTV 292
|
| >d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 310 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 2-isopropylmalate synthase LeuA, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 58.8 bits (141), Expect = 2e-10
Identities = 19/127 (14%), Positives = 36/127 (28%), Gaps = 10/127 (7%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA---VHCHDTYGQAL 57
+ A +L T+ + TP +E + + +H H+ G A+
Sbjct: 175 VGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAV 234
Query: 58 ANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFAS 117
A G + + G G +GNV L L + + + +
Sbjct: 235 AAAELGFAAGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQIDFSNI-DE 287
Query: 118 ASEMFSK 124
Sbjct: 288 IRRTVEY 294
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} Length = 289 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Score = 73.9 bits (180), Expect = 1e-15
Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 13/197 (6%)
Query: 105 MQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPY 164
+ G+ + +A + ++ T + + + A G+ G+
Sbjct: 88 LLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEYARNLGMDTVGF------LMM 141
Query: 165 EGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL-AVHCH 223
+P + + G I + D+ G + +R + V+ + +H H
Sbjct: 142 SHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAH 201
Query: 224 DTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGAD 283
+AN + A+E G D+S+AG+G GN E + + E +G G D
Sbjct: 202 HNLSLGVANSIVAVEEGCDRVDASLAGMGAGA------GNAPLEVFIAVAERLGWNHGTD 255
Query: 284 LTSLLRTGHYICGKLKK 300
L +L+ I L+
Sbjct: 256 LYTLMDAADDIVRPLQD 272
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} Length = 289 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Score = 53.1 bits (126), Expect = 1e-08
Identities = 24/125 (19%), Positives = 46/125 (36%), Gaps = 7/125 (5%)
Query: 1 MKVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRL-AVHCHDTYGQALAN 59
+ + G I + D+ G + +R + V+ + +H H +AN
Sbjct: 151 AEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVAN 210
Query: 60 ILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASAS 119
+ A+E G D+S+AG+G GN E + + E G + +A
Sbjct: 211 SIVAVEEGCDRVDASLAGMGAGA------GNAPLEVFIAVAERLGWNHGTDLYTLMDAAD 264
Query: 120 EMFSK 124
++
Sbjct: 265 DIVRP 269
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 327 | |||
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 100.0 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 100.0 | |
| d1sr9a2 | 310 | 2-isopropylmalate synthase LeuA, catalytic domain | 100.0 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 99.9 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 99.89 | |
| d1sr9a2 | 310 | 2-isopropylmalate synthase LeuA, catalytic domain | 99.82 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 97.1 | |
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 96.8 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 96.56 | |
| d1j93a_ | 343 | Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic | 95.77 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 95.05 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 94.95 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 94.3 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 94.12 | |
| d1dosa_ | 358 | Fructose-bisphosphate aldolase (FBP aldolase) {Esc | 93.88 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 93.23 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 93.2 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 93.06 | |
| d1r3sa_ | 356 | Uroporphyrinogen decarboxylase, UROD {Human (Homo | 92.87 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 92.5 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 92.14 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 91.95 | |
| d1o0ya_ | 251 | Deoxyribose-phosphate aldolase DeoC {Thermotoga ma | 91.25 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 91.16 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 91.1 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 91.1 | |
| d1oy0a_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Mycoba | 91.08 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 90.78 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 90.45 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 90.32 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 89.92 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 89.73 | |
| d1xxxa1 | 296 | Dihydrodipicolinate synthase {Mycobacterium tuberc | 89.63 | |
| d1f74a_ | 293 | N-acetylneuraminate lyase {Haemophilus influenzae | 89.57 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 89.21 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 89.13 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 89.07 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 88.82 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 88.44 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 88.4 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 88.3 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 87.82 | |
| d1m3ua_ | 262 | Ketopantoate hydroxymethyltransferase PanB {Escher | 87.28 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 86.74 | |
| d1sfla_ | 236 | Type I 3-dehydroquinate dehydratase {Staphylococcu | 86.34 | |
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 85.72 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 85.66 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 85.13 | |
| d1ad1a_ | 264 | Dihydropteroate synthetase {Staphylococcus aureus | 84.42 | |
| d1o5ka_ | 295 | Dihydrodipicolinate synthase {Thermotoga maritima | 84.28 | |
| d1u83a_ | 249 | (2r)-phospho-3-sulfolactate synthase ComA {Bacillu | 82.81 | |
| d1p1xa_ | 250 | Deoxyribose-phosphate aldolase DeoC {Escherichia c | 82.33 | |
| d1qwga_ | 251 | (2r)-phospho-3-sulfolactate synthase ComA {Archaeo | 82.16 | |
| d1j93a_ | 343 | Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic | 82.11 | |
| d1w3ia_ | 293 | 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus | 81.34 | |
| d1o66a_ | 260 | Ketopantoate hydroxymethyltransferase PanB {Neisse | 81.28 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 81.09 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 81.07 | |
| d2a6na1 | 292 | Dihydrodipicolinate synthase {Escherichia coli [Ta | 80.69 |
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=100.00 E-value=1.9e-37 Score=284.58 Aligned_cols=170 Identities=21% Similarity=0.322 Sum_probs=156.6
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhc-
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI- 213 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~- 213 (327)
++.+...++.+++.|..+.++++.. +..+++++++.++++.+.+.|+++|+|+||+|.++|.+++++++.+++.+
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~li~~l~~~~~ 204 (303)
T d1rqba2 129 PRNMAHAMAAVKKAGKHAQGTICYT----ISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYG 204 (303)
T ss_dssp THHHHHHHHHHHHTTCEEEEEEECC----CSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEec----CCCCCCHHHHHHHHHHHHhcCCcEEeecCccchhhhHHHHHHHHHHHhhcC
Confidence 5677888999999999988777654 34467899999999999999999999999999999999999999999998
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHY 293 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~ 293 (327)
|+++|++|+|||+|||+||+++|+++|+++||+|++|||| |+||++||+++.+|+++|+++++|+++|.+++++
T Consensus 205 ~~i~i~~H~Hnd~Gla~AN~laA~~aG~~~id~ti~GlG~------~~GN~~te~lv~~L~~~g~~t~idl~~L~~i~~~ 278 (303)
T d1rqba2 205 QKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSL------GPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDH 278 (303)
T ss_dssp TTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGCS------TTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHH
T ss_pred CcccceeccCchHHHHHHHHHHHHHcCCCEEEECCccCCC------CCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999 8899999999999999999999999999999999
Q ss_pred HHHhcCC----CCChhhhhcccccc
Q psy12516 294 ICGKLKK----PSNSKVAKALPVKE 314 (327)
Q Consensus 294 ~~~~~~~----~~~~~~~~~~~~~~ 314 (327)
++++... .-++.||.++|.||
T Consensus 279 ~~~ir~~y~~~~~~~~v~~~~~~h~ 303 (303)
T d1rqba2 279 FKAIRPKYKKFESKTLVDTSIFKSQ 303 (303)
T ss_dssp HHHHGGGGGGGCCSCSCCCTHHHHC
T ss_pred HHHHHHhhcccccCCCCChHHhccC
Confidence 9998665 23468999999997
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=100.00 E-value=1.7e-35 Score=269.63 Aligned_cols=162 Identities=20% Similarity=0.354 Sum_probs=148.4
Q ss_pred HHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhc-
Q psy12516 135 LERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI- 213 (327)
Q Consensus 135 i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~- 213 (327)
++...+.++++++.|+++..+++ +.++++++++.++++.+.++|+++|+|+||.|.++|.+++++++.+++.+
T Consensus 118 ~~~~~~~~~~a~~~g~~~~~~~~------~~~~~~~~~~~~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~~ 191 (289)
T d1nvma2 118 ADVSKQHIEYARNLGMDTVGFLM------MSHMIPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLK 191 (289)
T ss_dssp GGGGHHHHHHHHHHTCEEEEEEE------STTSSCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSC
T ss_pred hhhHhHHHHHHHHhCCceeeEee------eccccCchhhhHHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHhc
Confidence 56677889999999999876544 45689999999999999999999999999999999999999999999998
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHH
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHY 293 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~ 293 (327)
|+++|++|+|||+|||+||+++|+++|+++||+|++|||| |+||++||+++.+|+++|+++++|+++|.++++.
T Consensus 192 ~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~id~si~GlG~------~~GN~~tE~lv~~l~~~g~~~~id~~~l~~~~~~ 265 (289)
T d1nvma2 192 PETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGA------GAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADD 265 (289)
T ss_dssp TTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHH
T ss_pred ccccceeeechHHHHHHHHHHHHHHhCCcEeeccccccCC------CCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999 9999999999999999999999999999998755
Q ss_pred -HHHhcCCCCCh---hhhh
Q psy12516 294 -ICGKLKKPSNS---KVAK 308 (327)
Q Consensus 294 -~~~~~~~~~~~---~~~~ 308 (327)
++++.++|+|+ +||-
T Consensus 266 ~~~~~~~~p~~~~~~~vg~ 284 (289)
T d1nvma2 266 IVRPLQDRPVRVDRETLGL 284 (289)
T ss_dssp TTGGGCSSCCSCCHHHHHH
T ss_pred HHHHhcCCCCCCCCCeecC
Confidence 57788999885 6664
|
| >d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 2-isopropylmalate synthase LeuA, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=100.00 E-value=2.3e-32 Score=250.51 Aligned_cols=190 Identities=16% Similarity=0.108 Sum_probs=153.0
Q ss_pred cchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHH----HHHH-cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 109 VKEIAVFASASEMFSKRNINCTIEESLERFSEVVS----TALT-NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 109 id~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~----~a~~-~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
...+......+..+.+.+.+.+..+.......... .+++ .+..+... +++++.++.+.+.+.+..+...+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 178 (310)
T d1sr9a2 103 RAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFE----YSPESYTGTELEYAKQVCDAVGEV 178 (310)
T ss_dssp EEEEEEEEECCHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEE----EEEETGGGSCHHHHHHHHHHHHHH
T ss_pred eeeEEeecchhHHHHHHHhhccHHhhhhhhhhhhhHHHHHHHHhhcceeEEE----EecccCCCCcHHHHHHHHHHHHHH
Confidence 33444555666677777788777765554444333 2222 23333222 223344567888887777666553
Q ss_pred ------CcCEEEecCCCCccCHHHHHHHHHHHHHhcCC---CeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCC
Q psy12516 184 ------GCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 254 (327)
Q Consensus 184 ------g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~---~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~ 254 (327)
|++.|+++||.|.++|.++.++++.+++.+|+ +++++|+|||+|||+||+++|+++|+++||+|+.|||+
T Consensus 179 ~~~~~~g~~~i~l~Dt~G~~~P~~v~~~v~~~~~~~~~~~~i~i~~H~Hn~~Gla~AN~laA~~aG~~~iD~si~GmG~- 257 (310)
T d1sr9a2 179 IAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGE- 257 (310)
T ss_dssp HCCBTTBCEEEEEEESSCCSCHHHHHHHHHHHHHHSSSGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS-
T ss_pred hhhhhcCceEEeecccccccchhHHHHHHHHHHHhccCccceeeeeccccchhhhhHHHHHHHhccCCEEecCCccccc-
Confidence 78999999999999999999999999999875 57999999999999999999999999999999999999
Q ss_pred CCCCCCCCCccHHHHHHHHHhCCCCCCCChhhHHHHHHHHHHhcCCCCCh---hhhh
Q psy12516 255 PYARGASGNVATEDLVYMLEGMGIETGADLTSLLRTGHYICGKLKKPSNS---KVAK 308 (327)
Q Consensus 255 p~~~g~~Gn~~~e~~~~~l~~~g~~~~~d~~~l~~~~~~~~~~~~~~~~~---~~~~ 308 (327)
|+||++||+++.+|+++|+++++|+++|.++++++++++++|+|+ +||.
T Consensus 258 -----~aGN~~tE~lv~~l~~~g~~~~idl~~L~~~~~~v~~~~~~~~~~~~p~vG~ 309 (310)
T d1sr9a2 258 -----RTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYGGD 309 (310)
T ss_dssp -----TTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHHHHHHHSCCCCTTCTTTST
T ss_pred -----ccCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCccC
Confidence 999999999999999999999999999999999999999999985 6775
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=99.90 E-value=4.4e-24 Score=194.82 Aligned_cols=108 Identities=25% Similarity=0.421 Sum_probs=101.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhc-CCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~-~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++|+|+|+|+||+|.++|.++.++++.+++.+ |++++++|+|||+|++++|+++|+++|+++||+|++||||
T Consensus 165 ~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~i~i~~H~Hnd~Gla~AN~laA~~aG~~~id~ti~GlG~ 244 (303)
T d1rqba2 165 KLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTAISSMSL 244 (303)
T ss_dssp HHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHHHHTTCSEEEEBCGGGCS
T ss_pred HHHHHHHhcCCcEEeecCccchhhhHHHHHHHHHHHhhcCCcccceeccCchHHHHHHHHHHHHHcCCCEEEECCccCCC
Confidence 578889999999999999999999999999999999988 5689999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|+++++++|+|.-.+.
T Consensus 245 ------~~GN~~te~lv~~L~~~g~~t~idl~~L~ 273 (303)
T d1rqba2 245 ------GPGHNPTESVAEMLEGTGYTTNLDYDRLH 273 (303)
T ss_dssp ------TTSBCBHHHHHHHTTTSSEECCCCHHHHH
T ss_pred ------CCCCccHHHHHHHHHhcCCCCCCCHHHHH
Confidence 67999999999999999999999976644
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=99.89 E-value=4e-23 Score=187.15 Aligned_cols=113 Identities=22% Similarity=0.358 Sum_probs=104.9
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhc-CCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI-PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~-~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
++++++.++|+|.|+|+||.|.++|++++++++.+++.+ |++++++|+|||+|++++|+++|+++|+++||+|+.|||+
T Consensus 152 ~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~id~si~GlG~ 231 (289)
T d1nvma2 152 EQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGA 231 (289)
T ss_dssp HHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS
T ss_pred HHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHhcccccceeeechHHHHHHHHHHHHHHhCCcEeeccccccCC
Confidence 567889999999999999999999999999999999998 5689999999999999999999999999999999999999
Q ss_pred CCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 81 CPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
++||+++|+++.+++++++++++|...+....++
T Consensus 232 ------~~GN~~tE~lv~~l~~~g~~~~id~~~l~~~~~~ 265 (289)
T d1nvma2 232 ------GAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADD 265 (289)
T ss_dssp ------TTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHH
T ss_pred ------CCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHH
Confidence 8899999999999999999999998877644333
|
| >d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 2-isopropylmalate synthase LeuA, catalytic domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.82 E-value=1e-20 Score=172.19 Aligned_cols=100 Identities=19% Similarity=0.172 Sum_probs=94.3
Q ss_pred cCcCEEEecCCccccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCC
Q psy12516 10 MGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 10 ~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~ 86 (327)
.|++.|+++||.|.++|.++.++++.+++.+|. +++++|+|||+|++++|+++|+++|+++||+|+.|||+
T Consensus 184 ~g~~~i~l~Dt~G~~~P~~v~~~v~~~~~~~~~~~~i~i~~H~Hn~~Gla~AN~laA~~aG~~~iD~si~GmG~------ 257 (310)
T d1sr9a2 184 ERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLFGNGE------ 257 (310)
T ss_dssp TBCEEEEEEESSCCSCHHHHHHHHHHHHHHSSSGGGEEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS------
T ss_pred cCceEEeecccccccchhHHHHHHHHHHHhccCccceeeeeccccchhhhhHHHHHHHhccCCEEecCCccccc------
Confidence 488999999999999999999999999999985 67999999999999999999999999999999999999
Q ss_pred ccCCCcHHHHHHHhhhhhcccCcchhhhh
Q psy12516 87 ASGNVATEDLVYMLEGKSMQCGVKEIAVF 115 (327)
Q Consensus 87 ~~gn~~~e~v~~~l~~~~~~~Gid~i~l~ 115 (327)
++||+++|+++.+|.+++.++++|...+.
T Consensus 258 ~aGN~~tE~lv~~l~~~g~~~~idl~~L~ 286 (310)
T d1sr9a2 258 RTGNVCLVTLGLNLFSRGVDPQIDFSNID 286 (310)
T ss_dssp TTCBCBHHHHHHHHHTTTCCCSSCCTTHH
T ss_pred ccCChhHHHHHHHHHhcCCCCCcCHHHHH
Confidence 99999999999999999999999876644
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=97.10 E-value=0.012 Score=51.28 Aligned_cols=111 Identities=20% Similarity=0.303 Sum_probs=78.4
Q ss_pred hHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCE--EEecCCCCccC--
Q psy12516 131 IEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYE--ISLGDTIGVGT-- 198 (327)
Q Consensus 131 ~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~--i~l~Dt~G~~~-- 198 (327)
.+|+++..++++++|+..|+.|++-+...-|.++. ..++|++..++++ +.|+|. +.+....|.-.
T Consensus 108 ~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGn~HG~Yk~~ 184 (305)
T d1rvga_ 108 FETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFME---RTGADYLAVAIGTSHGAYKGK 184 (305)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHH---HHCCSEEEECSSCCSSSBCSS
T ss_pred HHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccccccccCCHHHHHHHHH---HhCccHhhhhhhhhhcccCCC
Confidence 45668889999999999999999988875454432 1357777766654 569995 44556666432
Q ss_pred --HHHHHHHHHHHHHhcCCCeEEEee-------------------cCCcCcHHHHHHHHHHhcCceee
Q psy12516 199 --PGTMRLMLEDVLTVIPADRLAVHC-------------------HDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 199 --P~~~~~~~~~~~~~~~~~~l~~H~-------------------Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
|.==.++++.+++..+ +||.+|. |...|..-.....|+..|+.-|.
T Consensus 185 ~~~~l~~~~l~~I~~~~~-~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV~KiN 251 (305)
T d1rvga_ 185 GRPFIDHARLERIARLVP-APLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKIN 251 (305)
T ss_dssp SSCCCCHHHHHHHHHHCC-SCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEE
T ss_pred CcccchHHHHHHHHhccC-CCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHcCeEEEE
Confidence 2122345777777766 6899887 55668888999999999987654
|
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=96.80 E-value=0.048 Score=46.99 Aligned_cols=129 Identities=9% Similarity=0.092 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcC--EEE------ecCC----CCccCHHHHH
Q psy12516 136 ERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCY--EIS------LGDT----IGVGTPGTMR 203 (327)
Q Consensus 136 ~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~--~i~------l~Dt----~G~~~P~~~~ 203 (327)
+...++++.+++.|+++.+.++ +|.+ -+.++..+....+.+++.+ .+. ...| ....+|.+..
T Consensus 168 ~~~~~~~~~a~~~Gi~~~~~~i--~G~~----et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~~~~~~~~~e~l 241 (312)
T d1r30a_ 168 QERLDTLEKVRDAGIKVCSGGI--VGLG----ETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFI 241 (312)
T ss_dssp HHHHHHHHHHHHHHCEEECCEE--ECSS----CCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTSSCCCCCHHHHH
T ss_pred HHHHHHHHHHHHhccceecceE--ecCc----CcHHHHHHHHHHHHhcCCCCCeeeeccccCCCCcccccccCCCHHHHH
Confidence 3455678889999999876655 4432 3556677777777776543 222 1333 2245678888
Q ss_pred HHHHHHHHhcCCCeEEEee-cCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q psy12516 204 LMLEDVLTVIPADRLAVHC-HDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET 280 (327)
Q Consensus 204 ~~~~~~~~~~~~~~l~~H~-Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~ 280 (327)
.+++..|-.+|+..+.+-+ -..+|- -....++.+||+-+ +. |+ .+- .+++.+.++.+.++++.|+.+
T Consensus 242 ~~iA~~Rl~lp~~~i~i~~~~~~~~~--~~~~~~L~~Gan~~---~~--~~-~~~--t~~~~~~~~~~~~i~~~G~~P 309 (312)
T d1r30a_ 242 RTIAVARIMMPTSYVRLSAGREQMNE--QTQAMCFMAGANSI---FY--GC-KLL--TTPNPEEDKDLQLFRKLGLNP 309 (312)
T ss_dssp HHHHHHHHHCTTSEEEEESSGGGSCH--HHHHHHHHHTCCEE---EC--SS-BSS--SSBCCCHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHhCCCcceEEEechhhcCH--HHHHHHHhcCCcEE---Ee--cC-ccc--cCCCCCHHHHHHHHHHcCCCc
Confidence 8899888888886555433 233333 33345789999833 22 33 111 345678999999999998865
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.039 Score=47.38 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=72.2
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC--------CCCChHHHHHHHHHHHHcCcCEE--EecCCCCccC--H
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYE--------GAVPPHNVTRVATALYKMGCYEI--SLGDTIGVGT--P 199 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~--------~r~~~e~l~~~~~~~~~~g~~~i--~l~Dt~G~~~--P 199 (327)
+|+++..++++++|+..|+.|++-+...-+.++. ..++|++..++++ +.|+|.+ .+.-+.|.-. |
T Consensus 110 eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~---~TgvD~LAvaiGt~HG~y~~~p 186 (284)
T d1gvfa_ 110 AENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---LTGVDSLAVAIGTAHGLYSKTP 186 (284)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHH---HHCCSEEEECSSCCSSCCSSCC
T ss_pred HHHHHHHHHHHHHHHhhccceeeeeeeeccccccccccccccccCCHHHHHHHHH---HhCCCEEeeecCceeeccCCCC
Confidence 3457888999999999999999887764333321 1467787777665 5689954 4445555422 3
Q ss_pred HHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 200 GTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.==.++++.+++..+ +||.+|. --|..-.....|++.|+..|.
T Consensus 187 ~l~~~~L~~i~~~~~-vPLVlHG--gSG~~~e~i~~ai~~Gi~KiN 229 (284)
T d1gvfa_ 187 KIDFQRLAEIREVVD-VPLVLHG--ASDVPDEFVRRTIELGVTKVN 229 (284)
T ss_dssp CCCHHHHHHHHHHCC-SCEEECC--CTTCCHHHHHHHHHTTEEEEE
T ss_pred ccccchhhhhhcccc-CCeEeeC--CCCCCHHHHHHHHHcCeEEEE
Confidence 212245677777775 6887755 457777888889999987654
|
| >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]
Probab=95.77 E-value=0.1 Score=45.83 Aligned_cols=144 Identities=17% Similarity=0.144 Sum_probs=88.0
Q ss_pred HHHHHHHHcCcCEEEecCCccc-cCHHHH--------HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEE
Q psy12516 2 KVASALYKMGCYEISLGDTIGV-GTPGTM--------RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVF 71 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~-~~p~~~--------~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~i 71 (327)
++++...++|+|.|.+.|+.+. .+|... .++++.++...+..++..|++++... +..+ +.|++.+
T Consensus 187 ~~~~~qi~aGad~i~ifDs~a~~l~~~~f~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~i 261 (343)
T d1j93a_ 187 KYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGL-----LERLPLTGVDVV 261 (343)
T ss_dssp HHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEEEECSSCTTT-----GGGGGGGCCSEE
T ss_pred HHHHHHhccCCceEEeccHHHHHHhhHhhhhhccHHHHHHHhhhhhcCCCCceeeecccccch-----hhhhhccCcccc
Confidence 4677788899999999999854 477653 44555666666667777777765422 1111 3444443
Q ss_pred EecccCCCCCCCCCCccCCCcHHHHHHHhh-hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCC
Q psy12516 72 DSSIAGLGGCPYARGASGNVATEDLVYMLE-GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGI 150 (327)
Q Consensus 72 d~~~~glg~~p~~~~~~gn~~~e~v~~~l~-~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi 150 (327)
. .-.+.++++....+. +..+.-++|...++ .+.++..+..+++++.+++.|
T Consensus 262 s--------------~d~~~~l~~a~~~~~~~~~iqGNldP~~L~-------------~~~e~i~~~~~~~l~~~~~~~- 313 (343)
T d1j93a_ 262 S--------------LDWTVDMADGRRRLGPNVAIQGNVDPGVLF-------------GSKEFITNRINDTVKKAGKGK- 313 (343)
T ss_dssp E--------------CCTTSCHHHHHHHTCSSSEEECCBCGGGGG-------------SCHHHHHHHHHHHHHHHCSSS-
T ss_pred c--------------cccccchHHHHHHhCCCeEEEeCCChHHHc-------------CCHHHHHHHHHHHHHhcCCCC-
Confidence 3 112456666655543 23455556654333 234555666777777776544
Q ss_pred eEEEEEeeeccCCCCCCCChHHHHHHHHHHHHc
Q psy12516 151 RVRGYISCVVGCPYEGAVPPHNVTRVATALYKM 183 (327)
Q Consensus 151 ~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~ 183 (327)
.+. ..||-.-..+++|.+..+++.+.++
T Consensus 314 ~I~-----~lGhgi~~~Tp~eNv~a~v~~vr~~ 341 (343)
T d1j93a_ 314 HIL-----NLGHGIKVGTPEENFAHFFEIAKGL 341 (343)
T ss_dssp EEB-----CBSSCCCTTCCHHHHHHHHHHHHTC
T ss_pred cEE-----ECCCCCCCCCCHHHHHHHHHHHHhc
Confidence 332 3455554568999999999888765
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=95.05 E-value=0.55 Score=38.67 Aligned_cols=184 Identities=17% Similarity=0.200 Sum_probs=108.4
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l 100 (327)
...|+.+++.+.+.-++. +|..-+-+-..+..+...++ .|+..- ++-|+ | .|+.+++.-+.-.
T Consensus 31 ~~~T~~~i~~lc~~A~~~------~~~avcV~p~~v~~a~~~l~~s~v~v~--tVigF---P-----~G~~~~~~k~~E~ 94 (234)
T d1n7ka_ 31 PRATEEDVRNLVREASDY------GFRCAVLTPVYTVKISGLAEKLGVKLC--SVIGF---P-----LGQAPLEVKLVEA 94 (234)
T ss_dssp TTCCHHHHHHHHHHHHHH------TCSEEEECHHHHHHHHHHHHHHTCCEE--EEEST---T-----TCCSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh------CCeEEEECcHhHHHHHHHhhcCCCceE--EEEec---C-----CCCCcHHHHHHHH
Confidence 567888888888776553 23333333233444444443 465553 22222 2 2566666543322
Q ss_pred hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHH
Q psy12516 101 EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATAL 180 (327)
Q Consensus 101 ~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~ 180 (327)
+.+++.|.|.+-+....+. -.+...+.+.+.++.+++.|..+.+.+.. ...+.+.+.+.++..
T Consensus 95 -~~Ai~~GAdEID~Vin~~~---------~~~~~~~ev~~~~~~~~~~g~~lKVIlEt-------~~L~~~~i~~a~~~a 157 (234)
T d1n7ka_ 95 -QTVLEAGATELDVVPHLSL---------GPEAVYREVSGIVKLAKSYGAVVKVILEA-------PLWDDKTLSLLVDSS 157 (234)
T ss_dssp -HHHHHHTCCEEEECCCGGG---------CHHHHHHHHHHHHHHHHHTTCEEEEECCG-------GGSCHHHHHHHHHHH
T ss_pred -HHHHHcCCCeEEEEechhh---------hhhhhHHHHHHHHHHHhccCceEEEEEec-------cccchHHHHHHHHHH
Confidence 3456677776665433221 22334566777888888889877765553 246889999999999
Q ss_pred HHcCcCEEEecCCCCc----cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcH-HHHHHHHHHhcCceeee
Q psy12516 181 YKMGCYEISLGDTIGV----GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQA-LANILTAMEFGISVFDS 246 (327)
Q Consensus 181 ~~~g~~~i~l~Dt~G~----~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a-~an~l~a~~~G~~~vd~ 246 (327)
.+.|+|-| +-++|. .+|.++..+....+. ..+++..-- |-- ...++..+++|+++|=+
T Consensus 158 ~~aGadFV--KTSTG~~~~gat~~~~~~l~~~~~~----~~vgIKasG--GIrt~~~a~~~i~aGa~rIGt 220 (234)
T d1n7ka_ 158 RRAGADIV--KTSTGVYTKGGDPVTVFRLASLAKP----LGMGVKASG--GIRSGIDAVLAVGAGADIIGT 220 (234)
T ss_dssp HHTTCSEE--ESCCSSSCCCCSHHHHHHHHHHHGG----GTCEEEEES--SCCSHHHHHHHHHTTCSEEEE
T ss_pred HHhhhhhe--eecccccCCCCCHHHHHHHHHHhcC----CCCcEEeeC--CcCCHHHHHHHHHccCceeec
Confidence 99999965 556664 567777666554442 124443321 111 24567778999998754
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=94.95 E-value=0.82 Score=37.98 Aligned_cols=209 Identities=12% Similarity=0.095 Sum_probs=119.7
Q ss_pred HHHHHHcCcCEEEe-cCCc-cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCC
Q psy12516 4 ASALYKMGCYEISL-GDTI-GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGC 81 (327)
Q Consensus 4 ~~~~~~~g~~~i~~-~Dt~-G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~ 81 (327)
++++.+.|+|.+.+ .|-. +...+.++.+.++.+++..+++|+-|++-.... |+
T Consensus 34 ~~~~~~~~aD~vE~RlD~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~e------------------------GG- 88 (252)
T d1gqna_ 34 ALAYREATFDILEWRVDHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKE------------------------GG- 88 (252)
T ss_dssp HHHHTTSCCSEEEEEGGGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGG------------------------TC-
T ss_pred HHHHhhcCCCEEEEEEccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhh------------------------CC-
Confidence 44555667775443 2443 455677777777777777665665554432221 11
Q ss_pred CCCCCccCCCcHHHHHHHhhhhhcccC-cchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeec
Q psy12516 82 PYARGASGNVATEDLVYMLEGKSMQCG-VKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVV 160 (327)
Q Consensus 82 p~~~~~~gn~~~e~v~~~l~~~~~~~G-id~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~ 160 (327)
..+.+.++-+..+ +.+++.| +|.+-+-.... -+...+.++.+++.|..+-+ ++..
T Consensus 89 ------~~~~~~~~~~~ll-~~~~~~~~~d~iDiEl~~~---------------~~~~~~li~~a~~~~~~vI~--S~Hd 144 (252)
T d1gqna_ 89 ------EQTITTQHYLTLN-RAAIDSGLVDMIDLELFTG---------------DADVKATVDYAHAHNVYVVM--SNHD 144 (252)
T ss_dssp ------SBCCCHHHHHHHH-HHHHHHSCCSEEEEEGGGC---------------HHHHHHHHHHHHHTTCEEEE--EEEE
T ss_pred ------CCCCCHHHHHHHH-HHHHHcCCCceEecccccc---------------HHHHHHHHHHhhcCCCeEEE--EecC
Confidence 1122334433333 3344444 34443321111 12345667788888887654 3321
Q ss_pred cCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHH---HHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 161 GCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLED---VLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 161 g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~---~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
+..--+.+.+.+..+++.+.|+|.+-++=+ .-++.++.+++.. +++..++.|+..-+=-.. +...=+.+-
T Consensus 145 ---f~~TP~~~~l~~~~~~m~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~~--G~~SRi~~~ 217 (252)
T d1gqna_ 145 ---FHQTPSAEEMVSRLRKMQALGADIPKIAVM--PQSKHDVLTLLTATLEMQQHYADRPVITMSMAKE--GVISRLAGE 217 (252)
T ss_dssp ---SSCCCCHHHHHHHHHHHHHTTCSEEEEEEC--CSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTTT--THHHHHCHH
T ss_pred ---CCCCCCHHHHHHHHHHHHHhCCCeEEEEec--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCCc--chhHHHHHH
Confidence 122235579999999999999999888765 2356676666644 444555555544222222 345556666
Q ss_pred HhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 238 EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 238 ~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
..|....-+++ |+ |- +.|+.+++++...|+.
T Consensus 218 ~~GS~~tya~~---~~-~s---APGQ~~~~~l~~~l~~ 248 (252)
T d1gqna_ 218 VFGSAATFGAV---KQ-AS---APGQIAVNDLRSVLMI 248 (252)
T ss_dssp HHTCCEEECBS---SS-CC---STTCCBHHHHHHHHHH
T ss_pred HhCCceEeccC---CC-CC---CCCCCCHHHHHHHHHH
Confidence 77888777766 34 33 4569999999887764
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=94.30 E-value=0.22 Score=45.26 Aligned_cols=130 Identities=8% Similarity=0.103 Sum_probs=80.7
Q ss_pred cCEEEecCCc-cccCHHHHHHHHHHHHhhcCC---CeeEEEecCccchHHHHHHHHH-HcCCcEEEecccCCCCCCCCCC
Q psy12516 12 CYEISLGDTI-GVGTPGTMRLMLEDVLTVIPA---DRLAVHCHDTYGQALANILTAM-EFGISVFDSSIAGLGGCPYARG 86 (327)
Q Consensus 12 ~~~i~~~Dt~-G~~~p~~~~~~~~~~~~~~~~---~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~ 86 (327)
++.|.+..-+ ..++|..+.++++.+++.++- .++.+..+- ..-....+.++ ++|+.+|..++.-+..
T Consensus 102 v~~i~~GGGTPt~L~~~~l~~ll~~l~~~~~~~~~~e~t~E~~P--~~~~~~~l~~l~~~G~nRiSlGvQs~~~------ 173 (441)
T d1olta_ 102 VSQLHWGGGTPTYLNKAQISRLMKLLRENFQFNADAEISIEVDP--REIELDVLDHLRAEGFNRLSMGVQDFNK------ 173 (441)
T ss_dssp EEEEEEEESCGGGSCHHHHHHHHHHHHHHSCEEEEEEEEEEECS--SSCCTHHHHHHHHTTCCEEEEEEECCCH------
T ss_pred cceeEecCCCcCCCCHHHHHHHHHHHhhhccccchhcccccccc--cccchHHHHHHHHhCCceEEecchhcch------
Confidence 5677776644 567899999999999998762 223333221 11122334444 5666666655543321
Q ss_pred ccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCe-EEEEEeeeccCCCC
Q psy12516 87 ASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIR-VRGYISCVVGCPYE 165 (327)
Q Consensus 87 ~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~-v~~~l~~~~g~~~~ 165 (327)
++...+ +-..+ .+.+.++++.+++.|+. +...++ +|-|.
T Consensus 174 --------~vl~~i-------------------------~R~~~----~~~~~~~~~~~r~~g~~~vn~DLI--~GlPg- 213 (441)
T d1olta_ 174 --------EVQRLV-------------------------NREQD----EEFIFALLNHAREIGFTSTNIDLI--YGLPK- 213 (441)
T ss_dssp --------HHHHHH-------------------------TCCCC----HHHHHHHHHHHHHTTCCSCEEEEE--ESCTT-
T ss_pred --------hhhhhh-------------------------hcCCC----HHHHHHHHHHHHhcccceeecccc--cccCC-
Confidence 222211 11112 44567789999999987 665555 56664
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEec
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLG 191 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~ 191 (327)
-+.+.+.+-.+.+.++++|+|.+-
T Consensus 214 --qT~~~~~~tl~~~~~l~pd~is~y 237 (441)
T d1olta_ 214 --QTPESFAFTLKRVAELNPDRLSVF 237 (441)
T ss_dssp --CCHHHHHHHHHHHHHHCCSEEEEE
T ss_pred --cchHHHHHHHHHHHhhCCCccccc
Confidence 477889999999999999998773
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.12 E-value=0.43 Score=38.95 Aligned_cols=171 Identities=11% Similarity=0.032 Sum_probs=106.2
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccC
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAG 77 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~g 77 (327)
+.++++.+.|+| .+-++| |...|.-. ...++.+++.+++.++.+|..-..
T Consensus 19 ~~i~~l~~~~~d~iHiDimD--G~Fvpn~t~g~~~v~~i~~~~~~~~~dvHLMv~~------------------------ 72 (221)
T d1tqxa_ 19 EETQRMESLGAEWIHLDVMD--MHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEY------------------------ 72 (221)
T ss_dssp HHHHHHHHTTCSEEEEEEEB--SSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSC------------------------
T ss_pred HHHHHHHHcCCCEEEEECcc--CcCcCccccChHHHhhhhhcCCchhhhhhHHhhh------------------------
Confidence 346778888999 588999 65555432 245778888887778888875332
Q ss_pred CCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEe
Q psy12516 78 LGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYIS 157 (327)
Q Consensus 78 lg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~ 157 (327)
++..+. ...+.|.+.+.+-....+ ..+....+++.++.|..+...+.
T Consensus 73 ---------------P~~~i~----~~~~~~~~~i~~~~~~~~--------------~~~~~~~i~~i~~~g~~~Gial~ 119 (221)
T d1tqxa_ 73 ---------------PEKYVP----LLKTSNQLTFHFEALNED--------------TERCIQLAKEIRDNNLWCGISIK 119 (221)
T ss_dssp ---------------GGGGGG----GCTTSSEEEEEGGGGTTC--------------HHHHHHHHHHHHTTTCEEEEEEC
T ss_pred ---------------hhhhhh----hhhhcCceeEEeehhccc--------------cchhhHHHHHHHhcCCeEEEeec
Confidence 111111 123445555443222111 34566778899999999876544
Q ss_pred eeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe-c---CCCCccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHH
Q psy12516 158 CVVGCPYEGAVPPHNVTRVATALYKMGCYEISL-G---DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANI 233 (327)
Q Consensus 158 ~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l-~---Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~ 233 (327)
|. ++.+.+..+.. ...+|.+.+ + .-.|...-.++.+.++.+|+..++..|++ |-|.-..|.
T Consensus 120 -----p~---t~~~~~~~~l~---~~~~d~vlim~V~pG~~GQ~f~~~~l~KI~~lr~~~~~~~I~V----DGGIn~~~i 184 (221)
T d1tqxa_ 120 -----PK---TDVQKLVPILD---TNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV----DGGLNIETT 184 (221)
T ss_dssp -----TT---SCGGGGHHHHT---TTCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCCHHHH
T ss_pred -----cc---cccccchhhcc---cccccEEEEEeecccccccccCcchhHHHHHHHHhcCCcceEE----EcccCHHhH
Confidence 22 45555554331 123564422 2 23344334466777888999888776665 889999999
Q ss_pred HHHHHhcCceeee
Q psy12516 234 LTAMEFGISVFDS 246 (327)
Q Consensus 234 l~a~~~G~~~vd~ 246 (327)
-....+||+.+=+
T Consensus 185 ~~l~~aGad~iV~ 197 (221)
T d1tqxa_ 185 EISASHGANIIVA 197 (221)
T ss_dssp HHHHHHTCCEEEE
T ss_pred HHHHHcCCCEEEE
Confidence 9999999998643
|
| >d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Escherichia coli [TaxId: 562]
Probab=93.88 E-value=0.28 Score=43.20 Aligned_cols=117 Identities=23% Similarity=0.295 Sum_probs=81.5
Q ss_pred CChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCC----------CCCChHHHHHHHHHHHH-cCcCEE--EecCCCC
Q psy12516 129 CTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYE----------GAVPPHNVTRVATALYK-MGCYEI--SLGDTIG 195 (327)
Q Consensus 129 ~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~----------~r~~~e~l~~~~~~~~~-~g~~~i--~l~Dt~G 195 (327)
.+.+|+++..++++++|++.|+.|++-+...-|.++. -.++|++....++.+.+ -|+|.+ .+.-..|
T Consensus 148 l~~eeNi~~Tk~vve~Ah~~gv~VEaElG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG 227 (358)
T d1dosa_ 148 ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHG 227 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCS
T ss_pred CCHHHHHHHHHHHHHHHhhhCCeEEEeeeeeecccCCccccccchhhccCCHHHHHHHHHHHhccCccceeeeeccchhh
Confidence 3568889999999999999999999887765444431 14788887766665554 578743 3444554
Q ss_pred cc-------CHHHHHHHHHHHHHhc--CCCeEEEeecCCcCcHHHHHHHHHHhcCceee
Q psy12516 196 VG-------TPGTMRLMLEDVLTVI--PADRLAVHCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 196 ~~-------~P~~~~~~~~~~~~~~--~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
.- .|.-..++...+++.. |..++.+-.|--.|..-.....|++.|+.-|.
T Consensus 228 ~Yk~~~~~l~p~l~~~~~~~i~~~~~vp~~~~~LVlHGgSGip~e~i~~ai~~GV~KiN 286 (358)
T d1dosa_ 228 VYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMN 286 (358)
T ss_dssp SCCCSCCCCCTHHHHHHHHHHHHHHTCCTTCSCEEECSCTTCCHHHHHHHHHTTEEEEE
T ss_pred hcCCCCccCCchhhHHHHHHHHHHhCCCCcccceeccCCCCCcHHHHHHHHHcCCeEEe
Confidence 33 5666677777777764 43334444566678888889999999987654
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=93.23 E-value=0.51 Score=38.28 Aligned_cols=115 Identities=14% Similarity=0.126 Sum_probs=77.4
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCe----E
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADR----L 218 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~----l 218 (327)
+..++.+...+.+ |.. ..+.+.-..-++.+.+.|++.|-+.=-.|.+ .-+.+.+.+..+++..++.. |
T Consensus 50 ~~s~v~v~~VigF----P~G-~~~~~~k~~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIl 124 (211)
T d1ub3a_ 50 PHAPFRLVTVVGF----PLG-YQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVIL 124 (211)
T ss_dssp TTCSSEEEEEEST----TTC-CSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEEC
T ss_pred cCCCCceEEEEec----ccc-cCcHHHHHHHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEe
Confidence 4567877665544 443 4566666666778889999998887766654 45677778888888776543 3
Q ss_pred EEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 219 AVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 219 ~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
+.+.-++--. ...+..++++|+++|-+|- |.+. +.+..|++..+.+.
T Consensus 125 Et~~L~~~ei-~~a~~~a~~aGadfiKTST-G~~~--------~gat~e~v~~m~~~ 171 (211)
T d1ub3a_ 125 ETGYFSPEEI-ARLAEAAIRGGADFLKTST-GFGP--------RGASLEDVALLVRV 171 (211)
T ss_dssp CGGGSCHHHH-HHHHHHHHHHTCSEEECCC-SSSS--------CCCCHHHHHHHHHH
T ss_pred ccccCCHHHH-HHHHHHHHHhccceEEecC-CCCC--------CCCCHHHHHHHHHH
Confidence 3344443332 3556788999999999886 4442 45777777766553
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.20 E-value=0.94 Score=38.25 Aligned_cols=100 Identities=16% Similarity=0.177 Sum_probs=77.9
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCC-CeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPA-DRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~-~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.+.++.+.+.|++.|.+.-|+| .++.++-.++++.+.+...+ +++-.++ +++.--++..+..|.++|
T Consensus 23 g~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~G 102 (296)
T d1xxxa1 23 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG 102 (296)
T ss_dssp SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhc
Confidence 468999999999999999999999999998 47899888888888877643 6777766 556677888999999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+=...-- ...++-++++.++++
T Consensus 103 ad~v~i~~P~----------~~~~~~~~l~~~~~~ 127 (296)
T d1xxxa1 103 AHGLLVVTPY----------YSKPPQRGLQAHFTA 127 (296)
T ss_dssp CSEEEEECCC----------SSCCCHHHHHHHHHH
T ss_pred CCeEEEEecc----------CCCCCHHHHHHHHHH
Confidence 9987543321 123445677776664
|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=93.06 E-value=0.59 Score=38.74 Aligned_cols=24 Identities=21% Similarity=0.127 Sum_probs=20.2
Q ss_pred CCCccHHHHHHHHHhCCCCCCCCh
Q psy12516 261 SGNVATEDLVYMLEGMGIETGADL 284 (327)
Q Consensus 261 ~Gn~~~e~~~~~l~~~g~~~~~d~ 284 (327)
.|+.+...++..|++.||+--+-+
T Consensus 220 ~G~id~~~i~~~L~~~GY~G~~s~ 243 (271)
T d2q02a1 220 KDVMQNYQQVQRLENMGYRGIYAF 243 (271)
T ss_dssp TCSSCHHHHHHHHHHTTCCSCEEE
T ss_pred CcccCHHHHHHHHHHcCCCccEEE
Confidence 699999999999999988854443
|
| >d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.87 E-value=0.23 Score=43.70 Aligned_cols=146 Identities=13% Similarity=0.082 Sum_probs=82.5
Q ss_pred HHHHHHHHcCcCEEEecCCc-cccCHHHHHH--------HHHHHHhhcCC----CeeEEEecCccchHHHHHHHHH-HcC
Q psy12516 2 KVASALYKMGCYEISLGDTI-GVGTPGTMRL--------MLEDVLTVIPA----DRLAVHCHDTYGQALANILTAM-EFG 67 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~-G~~~p~~~~~--------~~~~~~~~~~~----~~~~~H~h~~~g~~~~~~~~a~-~aG 67 (327)
++++..+++|+|.|.+-||. |.++|....+ +++.+++..+. ....+|+..+... .+..+ +.|
T Consensus 191 ~~~~~qi~aGad~i~ifDs~a~~l~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~i~~~~~~~~----~l~~~~~~g 266 (356)
T d1r3sa_ 191 PYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDGHF----ALEELAQAG 266 (356)
T ss_dssp HHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTCGG----GHHHHTTSS
T ss_pred HHHHHHhhcccccceecccccccccHHHHHHHHHHHHHHHHHHHHHhhccccCCCceeeecchhHHH----HHHHHhccC
Confidence 46777889999999999998 5667776443 44455543221 1122333333221 23333 567
Q ss_pred CcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhh-hhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHH
Q psy12516 68 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG-KSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTAL 146 (327)
Q Consensus 68 ~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~-~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~ 146 (327)
++.+.. . .+.++++....+.. ..+.-++|-..++ .+.++..+..+++++..+
T Consensus 267 ~d~is~-----D---------~~~~l~~~~~~~~~~i~lqGNldP~~L~-------------~~~e~i~~~~~~~l~~~~ 319 (356)
T d1r3sa_ 267 YEVVGL-----D---------WTVAPKKARECVGKTVTLQGNLDPCALY-------------ASEEEIGQLVKQMLDDFG 319 (356)
T ss_dssp CSEEEC-----C---------TTSCHHHHHHHHCSSSEEEEEECGGGGG-------------SCHHHHHHHHHHHHHHHC
T ss_pred cccccc-----c---------ccCCHHHHHHHhCCCeeEEeCCCHHHHc-------------CCHHHHHHHHHHHHHHhC
Confidence 766652 1 24556665555533 3344555544332 234455666777777776
Q ss_pred HcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcC
Q psy12516 147 TNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMG 184 (327)
Q Consensus 147 ~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g 184 (327)
..| ++. + .||-.-..+++|.+..+++.+.++|
T Consensus 320 ~~~-~I~-n----lGhGI~p~tp~env~a~v~~vr~~~ 351 (356)
T d1r3sa_ 320 PHR-YIA-N----LGHGLYPDMDPEHVGAFVDAVHKHS 351 (356)
T ss_dssp SSS-EEE-E----ESSCCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCC-eEE-e----CCCCcCCCCCHHHHHHHHHHHHHhC
Confidence 544 332 2 3443334578888888888877654
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=92.50 E-value=2.4 Score=35.14 Aligned_cols=156 Identities=15% Similarity=0.151 Sum_probs=93.0
Q ss_pred HHHHHHHcCcCEEEecCCcc----------ccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 3 VASALYKMGCYEISLGDTIG----------VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G----------~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
.|+.+.++|+|.|.+.|+.| ..|.+++....+.+++..|..- -..|
T Consensus 27 ~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~------------------------~i~d 82 (260)
T d1o66a_ 27 FAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAM------------------------IVSD 82 (260)
T ss_dssp HHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSE------------------------EEEE
T ss_pred HHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCccee------------------------eecc
Confidence 56778899999999999874 3467777777888888877311 1122
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
+. ++ +-+...++.+.+.. ...+.|.|.+.+-.... ..+.++...+.|+.|
T Consensus 83 --mP-f~--------sy~~~~~~~~~a~~-~~~~~gadavk~eg~~~------------------~~~~i~~l~~~gIPV 132 (260)
T d1o66a_ 83 --LP-FG--------AYQQSKEQAFAAAA-ELMAAGAHMVKLEGGVW------------------MAETTEFLQMRGIPV 132 (260)
T ss_dssp --CC-TT--------SSSSCHHHHHHHHH-HHHHTTCSEEEEECSGG------------------GHHHHHHHHHTTCCE
T ss_pred --hh-hh--------hhcchhHHHHHHHH-HHHHhhhhhccccchhh------------------hhHHHHHHHHcCCee
Confidence 22 11 12234455544322 23456777665543221 234567777789999
Q ss_pred EEEEeeeccC--CC-----CCC-CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 153 RGYISCVVGC--PY-----EGA-VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 153 ~~~l~~~~g~--~~-----~~r-~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
.+.+...--. .. .++ .+...+.+-++.+.++|+..|.+- ..|.++.+.+.. +++-+.|++
T Consensus 133 ~gHiGl~Pq~~~~~gG~r~~Gk~~e~~~l~~~a~~le~AGa~~ivlE-----~Vp~~va~~It~---~~~iptIgI 200 (260)
T d1o66a_ 133 CAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDAGAAVVLME-----CVLAELAKKVTE---TVSCPTIGI 200 (260)
T ss_dssp EEEEESCGGGTTC-----------CHHHHHHHHHHHHHTTCSEEEEE-----SCCHHHHHHHHH---HCSSCEEEE
T ss_pred EeecccccchheecCcceeccccchhHHHHHHHHHHHHhhhhehhhh-----hccHHHHHHHHh---hhcceeeec
Confidence 8887752100 00 011 133457888889999999988874 458887776654 333334554
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=92.14 E-value=0.77 Score=37.31 Aligned_cols=114 Identities=15% Similarity=0.121 Sum_probs=72.2
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEec----CCCCccCHHHHHHHHHHHHHhc
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLG----DTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~----Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
...++++.++.|.++...+. | .++.+.+..+.+.+. -+|.+.+- .-.|...-.++.+.++.+|+..
T Consensus 97 ~~~~i~~i~~~g~~~Glal~-----p---~t~~~~~~~~l~~~~--~~d~vlim~v~PG~~GQ~f~~~~l~kI~~l~~~~ 166 (220)
T d1h1ya_ 97 WQELIQSIKAKGMRPGVSLR-----P---GTPVEEVFPLVEAEN--PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKY 166 (220)
T ss_dssp HHHHHHHHHHTTCEEEEEEC-----T---TSCGGGGHHHHHSSS--CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHC
T ss_pred HHHHHHHHHHcCCCcceeec-----c---ccchhHHHHHHhccc--ccceEEEEecCCCCcccccchhhhHHHHHHHhcC
Confidence 34467778888988765433 2 245555555433221 24544332 4455555567777789999888
Q ss_pred CCCeEEEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 214 PADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 214 ~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
|+.+|++ |-|.-.-|.-...++|++.+=+.-.= -++.+..+.+..|++
T Consensus 167 ~~~~I~V----DGGIn~~~i~~l~~aGad~~V~GS~i----------f~~~d~~~~i~~lr~ 214 (220)
T d1h1ya_ 167 PSLDIEV----DGGLGPSTIDVAASAGANCIVAGSSI----------FGAAEPGEVISALRK 214 (220)
T ss_dssp TTSEEEE----ESSCSTTTHHHHHHHTCCEEEESHHH----------HTSSCHHHHHHHHHH
T ss_pred CCceEEE----EecCCHHHHHHHHHCCCCEEEECHHH----------HCCCCHHHHHHHHHH
Confidence 8877777 88988899999999999986432121 234445666666654
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=91.95 E-value=0.4 Score=40.00 Aligned_cols=114 Identities=17% Similarity=0.152 Sum_probs=76.6
Q ss_pred HHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCeE----
Q psy12516 146 LTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRL---- 218 (327)
Q Consensus 146 ~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~l---- 218 (327)
+..++.+...+. .|.. ..+.+.-..-++.+.+.|++.|-+.=-.|.+ .-+.+.+-++.+++..++.++
T Consensus 83 ~gs~v~v~tVig----FP~G-~~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIl 157 (251)
T d1o0ya_ 83 EGTDVKVVTVVG----FPLG-ANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVII 157 (251)
T ss_dssp TTSCCEEEEEES----TTTC-CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEEC
T ss_pred cCCCceEEeecc----CCCC-CCcHHHHHHHHHHHHHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeee
Confidence 457888765544 3543 4666666666788889999998887777763 556777778888877655433
Q ss_pred EEeecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 219 AVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 219 ~~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
+...-++...- ..+..++++|+++|-+|-+ .+ .|.+..|++-.+.+
T Consensus 158 Et~~L~~~e~~-~a~~ia~~aGadfvKTSTG-f~--------~~gat~e~V~~m~~ 203 (251)
T d1o0ya_ 158 ETCYLDTEEKI-AACVISKLAGAHFVKTSTG-FG--------TGGATAEDVHLMKW 203 (251)
T ss_dssp CGGGCCHHHHH-HHHHHHHHTTCSEEECCCS-SS--------SCCCCHHHHHHHHH
T ss_pred cccccCcHHHH-HHHHHHHHhCcceeeccCC-CC--------CCCcCHHHHHHHHH
Confidence 33333444444 4577889999999998764 32 34577777765554
|
| >d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermotoga maritima [TaxId: 2336]
Probab=91.25 E-value=3.3 Score=34.09 Aligned_cols=188 Identities=14% Similarity=0.121 Sum_probs=108.1
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYML 100 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l 100 (327)
...|+.++..+.+..++. +|.+-+.+-..+.-+...++ .++.. -+.+ | .| .|+.+++.-+.-.
T Consensus 46 p~~t~e~i~~lc~~A~~~------~~aaVcV~P~~v~~a~~~L~gs~v~v-~tVi-g---FP-----~G~~~~~~K~~Ea 109 (251)
T d1o0ya_ 46 PFATPDDIKKLCLEAREN------RFHGVCVNPCYVKLAREELEGTDVKV-VTVV-G---FP-----LGANETRTKAHEA 109 (251)
T ss_dssp TTCCHHHHHHHHHHHHHH------TCSEEEECGGGHHHHHHHHTTSCCEE-EEEE-S---TT-----TCCSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhhc------CceEEEECHHHHHHHHHHhcCCCceE-Eeec-c---CC-----CCCCcHHHHHHHH
Confidence 456778888877766553 34455555555666666664 44433 2223 2 22 3566766544322
Q ss_pred hhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHH
Q psy12516 101 EGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATAL 180 (327)
Q Consensus 101 ~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~ 180 (327)
+.+++.|.|.+-+....+... ....+...+.+..+++.++ |..+.+.+.. ...+.+.+...++.+
T Consensus 110 -~~Ai~~GAdEID~Vin~~~l~-----~g~~~~v~~ei~~v~~~~~--~~~lKVIlEt-------~~L~~~e~~~a~~ia 174 (251)
T d1o0ya_ 110 -IFAVESGADEIDMVINVGMLK-----AKEWEYVYEDIRSVVESVK--GKVVKVIIET-------CYLDTEEKIAACVIS 174 (251)
T ss_dssp -HHHHHHTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTT--TSEEEEECCG-------GGCCHHHHHHHHHHH
T ss_pred -HHHHHcCCceEEEEeccchhh-----cCCHHHHHHHHHHHHHHhc--ccceeeeecc-------cccCcHHHHHHHHHH
Confidence 356778888776654443321 1223344555666666553 5666554443 257888899999999
Q ss_pred HHcCcCEEEecCCC--CccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 181 YKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 181 ~~~g~~~i~l~Dt~--G~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
.+.|+|-|--+.-. |..+|++++.+-..+ ++ .+++..---- -....++..+.+|+++|=+
T Consensus 175 ~~aGadfvKTSTGf~~~gat~e~V~~m~~~~----~~-~~giKasGGI-rt~~~a~~~i~aGa~riGt 236 (251)
T d1o0ya_ 175 KLAGAHFVKTSTGFGTGGATAEDVHLMKWIV----GD-EMGVKASGGI-RTFEDAVKMIMYGADRIGT 236 (251)
T ss_dssp HHTTCSEEECCCSSSSCCCCHHHHHHHHHHH----CT-TSEEEEESSC-CSHHHHHHHHHTTCSEEEE
T ss_pred HHhCcceeeccCCCCCCCcCHHHHHHHHHHh----CC-CceEeccCCc-CCHHHHHHHHHHhhHHhCC
Confidence 99999976544432 246888876554433 33 3444433100 0135567778999998743
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=91.16 E-value=1.1 Score=37.61 Aligned_cols=82 Identities=16% Similarity=0.174 Sum_probs=69.7
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.+.++.+.+.|++.|.+.-|+| .+++++-.++++.+.+.. +.+++.+++ +++.--++..+..|.++|
T Consensus 18 g~iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~G 97 (295)
T d1hl2a_ 18 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG 97 (295)
T ss_dssp SSBCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred cCcCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcC
Confidence 468999999999999999999999999998 588999999999888776 346788776 667778899999999999
Q ss_pred Cceeeec
Q psy12516 241 ISVFDSS 247 (327)
Q Consensus 241 ~~~vd~s 247 (327)
++.+=..
T Consensus 98 ad~~~v~ 104 (295)
T d1hl2a_ 98 FDAVSAV 104 (295)
T ss_dssp CSEEEEE
T ss_pred Cceeeee
Confidence 9976553
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=91.10 E-value=3.3 Score=33.75 Aligned_cols=114 Identities=14% Similarity=0.183 Sum_probs=65.7
Q ss_pred HHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhc--CCCeEEE--
Q psy12516 145 ALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVI--PADRLAV-- 220 (327)
Q Consensus 145 a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~--~~~~l~~-- 220 (327)
.+..++++...+. .|. +..+.+.-..-++.+.+.|+|.|-+.=-.|.. .+..++.+..+.+.. .+.++-+
T Consensus 67 l~~s~v~v~tVig----FP~-G~~~~~~k~~E~~~Ai~~GAdEID~Vin~~~~-~~~~~~ev~~~~~~~~~~g~~lKVIl 140 (234)
T d1n7ka_ 67 AEKLGVKLCSVIG----FPL-GQAPLEVKLVEAQTVLEAGATELDVVPHLSLG-PEAVYREVSGIVKLAKSYGAVVKVIL 140 (234)
T ss_dssp HHHHTCCEEEEES----TTT-CCSCHHHHHHHHHHHHHHTCCEEEECCCGGGC-HHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhcCCCceEEEEe----cCC-CCCcHHHHHHHHHHHHHcCCCeEEEEechhhh-hhhhHHHHHHHHHHHhccCceEEEEE
Confidence 3445888865544 354 35777777777888889999998877555543 344444444433321 1223322
Q ss_pred --eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 221 --HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 221 --H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
...++-- -...+..++++|+++|-+| .|.+. .++..++++..++
T Consensus 141 Et~~L~~~~-i~~a~~~a~~aGadFVKTS-TG~~~--------~gat~~~~~~l~~ 186 (234)
T d1n7ka_ 141 EAPLWDDKT-LSLLVDSSRRAGADIVKTS-TGVYT--------KGGDPVTVFRLAS 186 (234)
T ss_dssp CGGGSCHHH-HHHHHHHHHHTTCSEEESC-CSSSC--------CCCSHHHHHHHHH
T ss_pred eccccchHH-HHHHHHHHHHhhhhheeec-ccccC--------CCCCHHHHHHHHH
Confidence 2222222 2345567889999999987 44433 2234566655544
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=91.10 E-value=1.6 Score=36.52 Aligned_cols=46 Identities=24% Similarity=0.312 Sum_probs=30.7
Q ss_pred HHHHHHHHcCcCEEEec----CCc---------------cccCHHHHHHHHHHHHhhcCCCeeEE
Q psy12516 2 KVASALYKMGCYEISLG----DTI---------------GVGTPGTMRLMLEDVLTVIPADRLAV 47 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~----Dt~---------------G~~~p~~~~~~~~~~~~~~~~~~~~~ 47 (327)
++++.+.+.|+|.|.+. |.. .-.++..+-++++.+++..+..++-+
T Consensus 35 ~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~~pivl 99 (267)
T d1qopa_ 35 KIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGL 99 (267)
T ss_dssp HHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEE
T ss_pred HHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccccceEE
Confidence 57788999999987776 665 23355556666666666655455444
|
| >d1oy0a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.08 E-value=2.1 Score=35.56 Aligned_cols=145 Identities=16% Similarity=0.201 Sum_probs=83.9
Q ss_pred HHHHHHHcCcCEEEecCCccc----------cCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEE
Q psy12516 3 VASALYKMGCYEISLGDTIGV----------GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFD 72 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~----------~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id 72 (327)
.|+.+.++|+|.|.+.|+.|+ .|++.+....+.+++..|..- -..|
T Consensus 29 ~A~~~~~agiDiiLVGDSlgmv~~G~~~T~~Vt~d~m~~H~~aV~rga~~~~------------------------iv~D 84 (262)
T d1oy0a_ 29 TARIFDEAGIPVLLVGDSAANVVYGYDTTVPISIDELIPLVRGVVRGAPHAL------------------------VVAD 84 (262)
T ss_dssp HHHHHHTTTCCEEEECTTHHHHTTCCSSSSSCCGGGTHHHHHHHHHHCTTSE------------------------EEEE
T ss_pred HHHHHHHcCCCEEEEcCchhhhhcCCCCcceeeHHHHHHHHHHHHhccccce------------------------eEec
Confidence 567788899999999998753 456777777788888776311 1112
Q ss_pred ecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeE
Q psy12516 73 SSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRV 152 (327)
Q Consensus 73 ~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v 152 (327)
+. ++ +-..+.|+.+....+...+.|.+.+.+-... ...+.+++..+.|+.|
T Consensus 85 --mP-f~--------s~~~s~~~a~~nA~r~~~~~ga~avkleg~~------------------~~~~~I~~L~~~gIPV 135 (262)
T d1oy0a_ 85 --LP-FG--------SYEAGPTAALAAATRFLKDGGAHAVKLEGGE------------------RVAEQIACLTAAGIPV 135 (262)
T ss_dssp --CC-TT--------SSTTCHHHHHHHHHHHHHTTCCSEEEEEBSG------------------GGHHHHHHHHHHTCCE
T ss_pred --ch-hh--------hcccchHHHHHHHHHHHhccccceeeechhh------------------hhHHHHHHHHhcCCce
Confidence 11 11 1122344444444444445666655543221 1234566666778888
Q ss_pred EEEEeeeccCCCC----------CCC-ChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHH
Q psy12516 153 RGYISCVVGCPYE----------GAV-PPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLED 208 (327)
Q Consensus 153 ~~~l~~~~g~~~~----------~r~-~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~ 208 (327)
.+.+... |-. ++. +...+.+-++.+.++|+..|.|- ..|.++.+.+..
T Consensus 136 ~gHiGLt---PQ~~~~~Gg~r~~Gk~~~~~~l~~da~~le~AGa~~ivlE-----~Vp~~la~~It~ 194 (262)
T d1oy0a_ 136 MAHIGFT---PQSVNTLGGFRVQGRGDAAEQTIADAIAVAEAGAFAVVME-----MVPAELATQITG 194 (262)
T ss_dssp EEEEECC---C--------------CHHHHHHHHHHHHHHHHTCSEEEEE-----SCCHHHHHHHHH
T ss_pred EEeeeec---ceeeeecCccceeccchhhhHhHHHHHHHHhCCcEEEecc-----cccHhHHHHHHh
Confidence 7776641 210 111 12344455778888999988774 458887776654
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=90.78 E-value=2.9 Score=34.80 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=77.6
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
+..|.+.+.+.++.+.+.|++.+.+.-|+| .+++++-.++++.+.+.. +.+++-+++= +...-++..+..|.++|
T Consensus 19 ~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G 98 (292)
T d1xkya1 19 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG 98 (292)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred cCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcC
Confidence 468999999999999999999999999999 588999999999988876 4467777665 45566788888999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+=..- |+. -.++-++++.+++.
T Consensus 99 ad~ilv~p------P~~----~~~s~~~i~~~~~~ 123 (292)
T d1xkya1 99 VDAVMLVA------PYY----NKPSQEGMYQHFKA 123 (292)
T ss_dssp CSEEEEEC------CCS----SCCCHHHHHHHHHH
T ss_pred CCEEEECC------CCC----CCCCHHHHHHHHHH
Confidence 99876642 322 23455677766653
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=90.45 E-value=2.7 Score=35.13 Aligned_cols=118 Identities=14% Similarity=0.116 Sum_probs=69.8
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r 167 (327)
.|..+.+.+...++...-..|++.+-+....++. ...|.+|..+-++.+++.+ ...+.+.+. .+.
T Consensus 18 dg~iD~~~l~~~i~~li~~~Gv~gi~v~GttGE~-----~~Ls~~Er~~l~~~~~~~~-~~~~~vi~g---------v~~ 82 (293)
T d1f74a_ 18 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGEN-----FMLSTEEKKEIFRIAKDEA-KDQIALIAQ---------VGS 82 (293)
T ss_dssp TSCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTG-----GGSCHHHHHHHHHHHHHHH-TTSSEEEEE---------CCC
T ss_pred CCCcCHHHHHHHHHHHHHhCCCCEEEECccCcch-----hhCCHHHHhhhhheeeccc-cCccccccc---------ccc
Confidence 3567777666555443334578877666665553 2456666444444444444 334444321 123
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCc-cCHHHHHHHHHHHHHhcCCCeEEEe
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGV-GTPGTMRLMLEDVLTVIPADRLAVH 221 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~~~~l~~H 221 (327)
.+.+...++++.+.+.|+|.+.+.-..-. .++.++.+.+..+.+..+ +|+.++
T Consensus 83 ~s~~~~iela~~a~~~Gad~i~~~pP~~~~~s~~~~~~~~~~v~~~~~-~pi~iY 136 (293)
T d1f74a_ 83 VNLKEAVELGKYATELGYDCLSAVTPFYYKFSFPEIKHYYDTIIAETG-SNMIVY 136 (293)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEECCCCCSSCCCHHHHHHHHHHHHHHHC-CCEEEE
T ss_pred ccHHHHHHHHHHHHHcCCCEeeccCccccccchHHHHHHHhcccccCC-ceEEEE
Confidence 56777888888888888887766555543 566777777777765544 456554
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=90.32 E-value=0.27 Score=41.05 Aligned_cols=128 Identities=13% Similarity=0.078 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh-cCCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV-IPAD 216 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~-~~~~ 216 (327)
+++-++.+|++|+.+.. ...+ ++.-+....+.++.+.+.++|.+.|.+.|.+..+...+-.++++.+++. +. +
T Consensus 57 l~eKI~l~~~~~V~v~~--GGtl---fE~a~~qg~~~~y~~~~~~lGf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~~-V 130 (251)
T d1qwga_ 57 VKEKINYYKDWGIKVYP--GGTL---FEYAYSKGKFDEFLNECEKLGFEAVEISDGSSDISLEERNNAIKRAKDNGFM-V 130 (251)
T ss_dssp HHHHHHHHHTTTCEEEE--CHHH---HHHHHHTTCHHHHHHHHHHHTCCEEEECCSSSCCCHHHHHHHHHHHHHTTCE-E
T ss_pred HHHHHHHHHHcCCeEeC--CcHH---HHHHHHcCCHHHHHHHHHHcCCCEEEEcCCccCCCHHHHHHHHHHHHhCCCE-E
Confidence 66779999999999851 1111 1111222347778888899999999999999999999999999998875 32 2
Q ss_pred eEEEeecC---CcCcH----HHHHHHHHHhcCcee--eecc----ccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q psy12516 217 RLAVHCHD---TYGQA----LANILTAMEFGISVF--DSSI----AGLGGCPYARGASGNVATEDLVYMLEGMG 277 (327)
Q Consensus 217 ~l~~H~Hn---~~g~a----~an~l~a~~~G~~~v--d~s~----~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g 277 (327)
--+++..+ +.-+. +-.+...+++||+.| |+-= .|+-+ ..|+.....+-..++..+
T Consensus 131 ~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiEarEsg~~~Gi~~------~~g~~r~~~i~~i~~~l~ 198 (251)
T d1qwga_ 131 LTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGKGLFD------KEGKVKENELDVLAKNVD 198 (251)
T ss_dssp EEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCTTTCCSSTTBC------TTSCBCHHHHHHHHTTSC
T ss_pred eecccCCCCCCccccCHHHHHHHHHHHHHCCCceeEeehhhcCCccceec------CCCChhHHHHHHHHHhCC
Confidence 23333331 11222 444667799999985 5432 34445 578887665554554443
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=89.92 E-value=1.4 Score=36.89 Aligned_cols=100 Identities=14% Similarity=0.144 Sum_probs=78.1
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEeec-CCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHCH-DTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~H-n~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.+.++.+.+.|++.|.++-|+| .+++++-.++++.+.+..+ .+++-+++= ++.--++..+..|.++|
T Consensus 17 ~~iD~~~~~~~i~~l~~~Gv~Gi~v~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~st~~ai~~a~~A~~~G 96 (295)
T d1o5ka_ 17 GELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKLG 96 (295)
T ss_dssp TEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred CcCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhccccccCCceEeecccccHHHHHHHHHHHHHcC
Confidence 478999999999999999999999999998 5888888888888877764 467888775 45668889999999999
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+-..- |+. ..++-++++.+++.
T Consensus 97 ad~v~v~p------P~y----~~~s~~~i~~~~~~ 121 (295)
T d1o5ka_ 97 ANGVLVVT------PYY----NKPTQEGLYQHYKY 121 (295)
T ss_dssp CSEEEEEC------CCS----SCCCHHHHHHHHHH
T ss_pred CCEEEEeC------CCC----CCCCHHHHHHHHHH
Confidence 99875422 221 23566777776664
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=89.73 E-value=4 Score=34.99 Aligned_cols=94 Identities=20% Similarity=0.194 Sum_probs=61.7
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCCeEE
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLA 219 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~ 219 (327)
+.++..++....+... ++ .+++. .+.++.+.+.|+|.|.+ | +....+..+.+.++.+|+..|++++.
T Consensus 77 ~~i~~vk~~~~~v~~~----vg------v~~~~-~e~~~~li~agvd~ivI-d-~A~G~~~~~~~~ik~ik~~~~~~~vi 143 (330)
T d1vrda1 77 RQVSIVKKTRLLVGAA----VG------TSPET-MERVEKLVKAGVDVIVI-D-TAHGHSRRVIETLEMIKADYPDLPVV 143 (330)
T ss_dssp HHHHHHHTCCBCCEEE----EC------SSTTH-HHHHHHHHHTTCSEEEE-C-CSCCSSHHHHHHHHHHHHHCTTSCEE
T ss_pred HHHHHHhhhccEEEEE----Ee------cCHHH-HHHHHHHHHCCCCEEEE-e-cCCCCchhHHHHHHHHHHhCCCCCEE
Confidence 3445566666555432 22 23333 46677888999998877 3 44556777888999999999987776
Q ss_pred EeecCCcCcHHHHHHHHHHhcCceeeeccccCCC
Q psy12516 220 VHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 253 (327)
Q Consensus 220 ~H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~ 253 (327)
.+-=-+. ..+...+++|||.|=+ |+|.
T Consensus 144 aGnV~t~----~~a~~l~~~GaD~v~V---Gig~ 170 (330)
T d1vrda1 144 AGNVATP----EGTEALIKAGADAVKV---GVGP 170 (330)
T ss_dssp EEEECSH----HHHHHHHHTTCSEEEE---CSSC
T ss_pred eechhHH----HHHHHHHHcCCCEEee---cccc
Confidence 6443333 2246677899988765 6664
|
| >d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.63 E-value=2.4 Score=35.46 Aligned_cols=115 Identities=16% Similarity=0.153 Sum_probs=62.2
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+....++. ...|.+|..+-++.+++.++. ...+.+ | .+..
T Consensus 23 g~iD~~~l~~~i~-~li~~Gv~Gi~v~G~tGE~-----~~Ls~eEr~~l~~~~~~~~~~-~~~vi~------g---~~~~ 86 (296)
T d1xxxa1 23 GSLDTATAARLAN-HLVDQGCDGLVVSGTTGES-----PTTTDGEKIELLRAVLEAVGD-RARVIA------G---AGTY 86 (296)
T ss_dssp SCBCHHHHHHHHH-HHHHTTCSEEEESSTTTTT-----TTSCHHHHHHHHHHHHHHHTT-TSEEEE------E---CCCS
T ss_pred cCcCHHHHHHHHH-HHHHcCCCEEEECeeccch-----hhCCHHHHHHHHHHHHHHhcc-ccceEe------c---cccc
Confidence 5677666554433 3466788877666555552 334555544444444444322 222221 1 1125
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.+...++++.+.+.|+|.+.+ +-.....+.+++.+.++.+.+..+ +||.+
T Consensus 87 s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~~~-~pi~l 138 (296)
T d1xxxa1 87 DTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADATE-LPMLL 138 (296)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTCS-SCEEE
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHHHHHHhcC-CCEEE
Confidence 5667777777777777775443 233334566667777777766553 45544
|
| >d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Haemophilus influenzae [TaxId: 727]
Probab=89.57 E-value=1.2 Score=37.37 Aligned_cols=80 Identities=10% Similarity=0.090 Sum_probs=67.9
Q ss_pred CCCChHHHHHHHHHHHHc-CcCEEEecCCCC---ccCHHHHHHHHHHHHHhcC-CCeEEEee-cCCcCcHHHHHHHHHHh
Q psy12516 166 GAVPPHNVTRVATALYKM-GCYEISLGDTIG---VGTPGTMRLMLEDVLTVIP-ADRLAVHC-HDTYGQALANILTAMEF 239 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~-g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~-~~~l~~H~-Hn~~g~a~an~l~a~~~ 239 (327)
+..+.+-+.+.++.+.+. |++.|.+.=|+| .++.++-.++++.+++..+ .+++-+++ +++..-++.-+..|.++
T Consensus 19 g~iD~~~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~ 98 (293)
T d1f74a_ 19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL 98 (293)
T ss_dssp SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHc
Confidence 468999999999988755 999999999988 5889998999988887764 46888888 77888888899999999
Q ss_pred cCceee
Q psy12516 240 GISVFD 245 (327)
Q Consensus 240 G~~~vd 245 (327)
|++.+=
T Consensus 99 Gad~i~ 104 (293)
T d1f74a_ 99 GYDCLS 104 (293)
T ss_dssp TCSEEE
T ss_pred CCCEee
Confidence 999863
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=89.21 E-value=1.1 Score=37.63 Aligned_cols=100 Identities=14% Similarity=0.069 Sum_probs=76.3
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhc-CCCeEEEee-cCCcCcHHHHHHHHHHhc
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVI-PADRLAVHC-HDTYGQALANILTAMEFG 240 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~-~~~~l~~H~-Hn~~g~a~an~l~a~~~G 240 (327)
+..|.+-+.+.++.+.+.|++.+.+.-|+| .++.++-.++++.+.+.. +.+++-.|+ +++.-.++..+..|.++|
T Consensus 17 ~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~G 96 (292)
T d2a6na1 17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG 96 (292)
T ss_dssp SSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSS
T ss_pred CCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcC
Confidence 478999999999999999999999999999 488888888888888776 446788876 566666777778888889
Q ss_pred CceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 241 ISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 241 ~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
++.+=..- |+. ..++-++++.+++.
T Consensus 97 ad~~~~~p------P~~----~~~~~~~i~~~f~~ 121 (292)
T d2a6na1 97 IVGCLTVT------PYY----NRPSQEGLYQHFKA 121 (292)
T ss_dssp CCEEEEEC------CCS----SCCCHHHHHHHHHH
T ss_pred CcceeccC------CCC----CCCCHHHHHHHHHH
Confidence 88665432 222 23566777776664
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=89.13 E-value=2.5 Score=34.81 Aligned_cols=106 Identities=14% Similarity=0.100 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHH
Q psy12516 132 EESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 132 ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~ 211 (327)
++.++++.++++.|++.|+.+.+- .+.++.......+++.+...++.+.++|+|.+.+.=+. .++ + +..+.+
T Consensus 119 ~~~l~~~~~v~~e~~~~glP~v~e-~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~~~p~---~~~---~-~~~~v~ 190 (251)
T d1ojxa_ 119 WKMFEELARIKRDAVKFDLPLVVW-SYPRGGKVVNETAPEIVAYAARIALELGADAMKIKYTG---DPK---T-FSWAVK 190 (251)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEE-ECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEECCCS---SHH---H-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCeEEEE-EeecCCccccCCCHHHHHHHHHHHHHhCCCEEEecCCC---cHH---H-HHHHHH
Confidence 456889999999999999986432 34444444557889999999999999999998864331 122 2 222222
Q ss_pred hcCCCeEEE---eecCCcCcHHHHHHHHHHhcCceee
Q psy12516 212 VIPADRLAV---HCHDTYGQALANILTAMEFGISVFD 245 (327)
Q Consensus 212 ~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~~vd 245 (327)
....+|+-+ -...+..--+.....|+++|+..+-
T Consensus 191 ~a~~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~ 227 (251)
T d1ojxa_ 191 VAGKVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIA 227 (251)
T ss_dssp HTTTSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred hcCCCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEe
Confidence 222223332 2233444456677778888886554
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=89.07 E-value=2.4 Score=34.37 Aligned_cols=185 Identities=12% Similarity=0.085 Sum_probs=99.0
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhh
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 101 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~ 101 (327)
-..|+.++..+.+..++. +|..-+.+-..+.-+...+ .|+. +-+.++ .| .|+.+++.-+.-.
T Consensus 15 ~~~t~~~i~~lc~~A~~~------~~~aVcV~P~~v~~a~~~l-~~vk-v~tVig----FP-----~G~~~~~~K~~E~- 76 (225)
T d1mzha_ 15 PHLSEKEIEEFVLKSEEL------GIYAVCVNPYHVKLASSIA-KKVK-VCCVIG----FP-----LGLNKTSVKVKEA- 76 (225)
T ss_dssp TTCCHHHHHHHHHHHHHT------TCSEEEECGGGHHHHHHHC-SSSE-EEEEES----TT-----TCCSCHHHHHHHH-
T ss_pred CCCCHHHHHHHHHHHHHh------CCcEEEECHHHHHHHHhhc-cCCc-eEEEec----cC-----CCCCcHHHHHHHH-
Confidence 356788888887766653 1222233322333333322 2332 322232 22 3566666543322
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+.+++.|.|.+-+....+.... -..+...+.++.+++.++ |..+.+.+.. +..+.+.+...++.+.
T Consensus 77 ~~Ai~~GAdEID~Vin~~~l~~-----g~~~~v~~ei~~v~~~~~--~~~lKVIlEt-------~~L~~~ei~~a~~~a~ 142 (225)
T d1mzha_ 77 VEAVRDGAQELDIVWNLSAFKS-----EKYDFVVEELKEIFRETP--SAVHKVIVET-------PYLNEEEIKKAVEICI 142 (225)
T ss_dssp HHHHHTTCSEEEEECCHHHHHT-----TCHHHHHHHHHHHHHTCT--TSEEEEECCG-------GGCCHHHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEeechhhhhc-----ccHHHHHHHHHHHHHhcc--Cceeehhhhh-------ccCCHHHHHHHHHHHH
Confidence 3567788887766554433211 122233444444444442 4444443333 2467889999999999
Q ss_pred HcCcCEEEecCCCCc----cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHHHhcCceeee
Q psy12516 182 KMGCYEISLGDTIGV----GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDS 246 (327)
Q Consensus 182 ~~g~~~i~l~Dt~G~----~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~~~G~~~vd~ 246 (327)
+.|+|-| +-++|. .+|++++.+-..+ ++ .+++..----. -...++..+++|+++|=+
T Consensus 143 ~aGadfi--KTSTG~~~~gat~e~v~~m~~~~----~~-~~~iKasGGIr-t~~~a~~~i~~Ga~RiGt 203 (225)
T d1mzha_ 143 EAGADFI--KTSTGFAPRGTTLEEVRLIKSSA----KG-RIKVKASGGIR-DLETAISMIEAGADRIGT 203 (225)
T ss_dssp HHTCSEE--ECCCSCSSSCCCHHHHHHHHHHH----TT-SSEEEEESSCC-SHHHHHHHHHTTCSEEEE
T ss_pred HcccceE--eecCCCCCCCCCHHHHHHHHHHh----CC-CceEECcCCCC-CHHHHHHHHHhchhheec
Confidence 9999965 455553 5777766544433 33 34444332110 145667888999998644
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=88.82 E-value=0.49 Score=38.51 Aligned_cols=176 Identities=14% Similarity=0.142 Sum_probs=94.8
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHH-HcCCcEEEeccc
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM-EFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~-~aG~~~id~~~~ 76 (327)
+.++++.+.|+| .+-++| |...|.-. .+.++.+++. +..++.+|..-..= .+.+..+ ++|++.|-.=..
T Consensus 18 ~~i~~~~~~g~d~iHiDimD--g~Fvpn~s~g~~~i~~i~~~-t~~~~dvHLMv~~P---~~~i~~~~~~ga~~i~~H~E 91 (217)
T d2flia1 18 SELARIEETDAEYVHIDIMD--GQFVPNISFGADVVASMRKH-SKLVFDCHLMVVDP---ERYVEAFAQAGADIMTIHTE 91 (217)
T ss_dssp HHHHHHHHTTCCEEEEEEEB--SSSSSCBCBCHHHHHHHHTT-CCSEEEEEEESSSG---GGGHHHHHHHTCSEEEEEGG
T ss_pred HHHHHHHHcCCCEEEEEccc--CcCCCccccCHHHHHHHHhc-CCCceEeEEEecCH---HHHHHHHHHcCCcEEEeccc
Confidence 346778888999 567788 43333211 1345666664 45888888875542 2334444 789997653322
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcch--------hhh---------hhhhhHHHHHHhhcCChHHHHHHHH
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSMQCGVKE--------IAV---------FASASEMFSKRNINCTIEESLERFS 139 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~--------i~l---------~~~~sd~~~~~~l~~s~ee~i~~~~ 139 (327)
-. .+++.++..+++.+.+.|+-. +.- +..+.+.+.-. ...++.+++++
T Consensus 92 ~~------------~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~Gq---~f~~~~~~ki~ 156 (217)
T d2flia1 92 ST------------RHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQ---AFIPECLEKVA 156 (217)
T ss_dssp GC------------SCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSC---CCCGGGHHHHH
T ss_pred cc------------cCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCccccc---ccchhhHHHHH
Confidence 11 124555566666555554321 000 00111111100 12345678888
Q ss_pred HHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh
Q psy12516 140 EVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV 212 (327)
Q Consensus 140 ~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~ 212 (327)
++.++.++++..+...+. +-.+.+ .++.+.++|+|.+... + ++..-.+..+.+..+|+.
T Consensus 157 ~l~~~~~~~~~~~~I~vD--------GGIn~~----~i~~l~~aGad~~V~G-s-aif~~~d~~~~i~~lr~~ 215 (217)
T d2flia1 157 TVAKWRDEKGLSFDIEVD--------GGVDNK----TIRACYEAGANVFVAG-S-YLFKASDLVSQVQTLRTA 215 (217)
T ss_dssp HHHHHHHHTTCCCEEEEE--------SSCCTT----THHHHHHHTCCEEEES-H-HHHTSSCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEe--------CCCCHH----HHHHHHHCCCCEEEEc-h-HHhCCCCHHHHHHHHHHh
Confidence 888888888876443222 123433 3556778999999876 2 233323445566666653
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=88.44 E-value=3.6 Score=34.24 Aligned_cols=115 Identities=13% Similarity=0.085 Sum_probs=55.2
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+.+....++. ...+.+|..+-++.+++.++ ....+.+ | .+..
T Consensus 18 g~iD~~~l~~~i~-~l~~~Gv~gi~~~G~tGE~-----~~Ls~eEr~~l~~~~~~~~~-~~~pvi~------g---v~~~ 81 (295)
T d1hl2a_ 18 QALDKASLRRLVQ-FNIQQGIDGLYVGGSTGEA-----FVQSLSEREQVLEIVAEEAK-GKIKLIA------H---VGCV 81 (295)
T ss_dssp SSBCHHHHHHHHH-HHHHHTCSEEEESSGGGTG-----GGSCHHHHHHHHHHHHHHHT-TTSEEEE------E---CCCS
T ss_pred cCcCHHHHHHHHH-HHHHcCCCEEEECeEccch-----hhCCHHHHHHHHhhhHHhhc-cccceee------c---cccc
Confidence 5566666555443 3356677776666555552 23444443333333333322 2222221 1 1124
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecCC-CCccCHHHHHHHHHHHHHhcCCCeEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGDT-IGVGTPGTMRLMLEDVLTVIPADRLA 219 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~Dt-~G~~~P~~~~~~~~~~~~~~~~~~l~ 219 (327)
+.+...++++.+.+.|+|.+.+.-- .-..+++++.+.+..+.+..++.++.
T Consensus 82 s~~~~i~~a~~a~~~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii 133 (295)
T d1hl2a_ 82 STAESQQLAASAKRYGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMV 133 (295)
T ss_dssp SHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTSCEE
T ss_pred hhhHHHHHHHHHHhcCCceeeeeeccccCCChHHHHHHHHHHhcccCcCccc
Confidence 4556666666666666665443322 22345566665555555544443433
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=88.40 E-value=4.3 Score=33.62 Aligned_cols=115 Identities=17% Similarity=0.163 Sum_probs=68.3
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++. .++.|++.+-+....++. ...|.+|..+-++.+++.+. ....+.+. .+..
T Consensus 19 ~~iD~~~~~~~i~~-l~~~Gv~gl~~~G~tGE~-----~~Ls~~Er~~l~~~~~~~~~-~~~~vi~g---------v~~~ 82 (292)
T d1xkya1 19 GNIDFAKTTKLVNY-LIDNGTTAIVVGGTTGES-----PTLTSEEKVALYRHVVSVVD-KRVPVIAG---------TGSN 82 (292)
T ss_dssp SSBCHHHHHHHHHH-HHHTTCCEEEESSTTTTG-----GGSCHHHHHHHHHHHHHHHT-TSSCEEEE---------CCCS
T ss_pred cCcCHHHHHHHHHH-HHHCCCCEEEECeEccch-----hhCCHHHHHHHHHHHHHHhC-CCceEEEe---------cCcc
Confidence 56777766555443 356888887776666653 34555664444444444432 23333221 1235
Q ss_pred ChHHHHHHHHHHHHcCcCEEEecC-CCCccCHHHHHHHHHHHHHhcCCCeEEE
Q psy12516 169 PPHNVTRVATALYKMGCYEISLGD-TIGVGTPGTMRLMLEDVLTVIPADRLAV 220 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l~D-t~G~~~P~~~~~~~~~~~~~~~~~~l~~ 220 (327)
+.++..++++.+.+.|+|.+.+.= ..-..+..++.+.++.+.+..+ +|+.+
T Consensus 83 s~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~-~pi~i 134 (292)
T d1xkya1 83 NTHASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTP-LPVML 134 (292)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCS-SCEEE
T ss_pred cHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCC-CcEEE
Confidence 667778888888888888665532 2233566777788887777765 45554
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=88.30 E-value=1.1 Score=38.08 Aligned_cols=92 Identities=14% Similarity=0.135 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHcCcCEEEecCCCC----------------------------ccCHHHHHHHHHHHHHhcCCCeEEEeec
Q psy12516 172 NVTRVATALYKMGCYEISLGDTIG----------------------------VGTPGTMRLMLEDVLTVIPADRLAVHCH 223 (327)
Q Consensus 172 ~l~~~~~~~~~~g~~~i~l~Dt~G----------------------------~~~P~~~~~~~~~~~~~~~~~~l~~H~H 223 (327)
...++++.+.+.|++.|.+.+|.+ ........+.++.+++..++++|..-.
T Consensus 184 ~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~~ipIi~~G- 262 (312)
T d1gtea2 184 DIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATG- 262 (312)
T ss_dssp CHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEES-
T ss_pred hHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcCCCcEEEEc-
Confidence 345778888999999999988743 111234457788888888776665321
Q ss_pred CCcCc-HHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 224 DTYGQ-ALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 224 n~~g~-a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
|- .-.-++..+.+||+-|...-.=+- .|.--++++...|++
T Consensus 263 ---GI~~~~d~~~~l~aGA~~Vqv~ta~~~--------~G~~~i~~i~~~L~~ 304 (312)
T d1gtea2 263 ---GIDSAESGLQFLHSGASVLQVCSAVQN--------QDFTVIQDYCTGLKA 304 (312)
T ss_dssp ---SCCSHHHHHHHHHTTCSEEEESHHHHT--------SCTTHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHcCCCeeEECHhhhc--------cChHHHHHHHHHHHH
Confidence 21 123557788999998876544332 356666667665553
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=87.82 E-value=5.5 Score=31.77 Aligned_cols=185 Identities=14% Similarity=0.107 Sum_probs=99.7
Q ss_pred ccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhh
Q psy12516 23 VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLE 101 (327)
Q Consensus 23 ~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~ 101 (327)
-.|..++..+.+..++. +|..-+.+-..+.-+...++ .++ .+-+.++ .| .|+.+++.-+.- -
T Consensus 14 ~~T~~~i~~lc~~A~~~------~~~aVcV~P~~v~~a~~~l~~s~v-~v~~Vig----FP-----~G~~~~~~k~~e-~ 76 (211)
T d1ub3a_ 14 TATLEEVAKAAEEALEY------GFYGLCIPPSYVAWVRARYPHAPF-RLVTVVG----FP-----LGYQEKEVKALE-A 76 (211)
T ss_dssp TCCHHHHHHHHHHHHHH------TCSEEECCGGGHHHHHHHCTTCSS-EEEEEES----TT-----TCCSCHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHHh------CCeEEEECHHHHHHHHHHccCCCC-ceEEEEe----cc-----cccCcHHHHHHH-H
Confidence 45667777776665543 23333333333333444442 222 2222232 12 245555543322 2
Q ss_pred hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHH
Q psy12516 102 GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALY 181 (327)
Q Consensus 102 ~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~ 181 (327)
+.+++.|.|.+-+....+... .-..+...+.+..+++.++ +..+.+.+.. +..+.+.+.+.++.+.
T Consensus 77 ~~ai~~GA~EiD~V~n~~~~~-----~g~~~~v~~ei~~v~~~~~--~~~lKVIlEt-------~~L~~~ei~~a~~~a~ 142 (211)
T d1ub3a_ 77 ALACARGADEVDMVLHLGRAK-----AGDLDYLEAEVRAVREAVP--QAVLKVILET-------GYFSPEEIARLAEAAI 142 (211)
T ss_dssp HHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHST--TSEEEEECCG-------GGSCHHHHHHHHHHHH
T ss_pred HHHHHcCCCeEEEeeccchhh-----cCCHHHHHHHHHHHHHhcc--CCceEEEecc-------ccCCHHHHHHHHHHHH
Confidence 356677877776654443321 1122333445555666554 3333333332 2578899999999999
Q ss_pred HcCcCEEEecCCCC----ccCHHHHHHHHHHHHHhcCCCeEEEeecCCcCc-HHHHHHHHHHhcCceeeec
Q psy12516 182 KMGCYEISLGDTIG----VGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQ-ALANILTAMEFGISVFDSS 247 (327)
Q Consensus 182 ~~g~~~i~l~Dt~G----~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~-a~an~l~a~~~G~~~vd~s 247 (327)
+.|+|-|-- ++| ..+|++++-+.+.+. + .+++..-- |- -...++.-+++|++++=+|
T Consensus 143 ~aGadfiKT--STG~~~~gat~e~v~~m~~~~~----~-~~~iKasG--GIrt~~~a~~~l~aGa~riGtS 204 (211)
T d1ub3a_ 143 RGGADFLKT--STGFGPRGASLEDVALLVRVAQ----G-RAQVKAAG--GIRDRETALRMLKAGASRLGTS 204 (211)
T ss_dssp HHTCSEEEC--CCSSSSCCCCHHHHHHHHHHHT----T-SSEEEEES--SCCSHHHHHHHHHTTCSEEEET
T ss_pred HhccceEEe--cCCCCCCCCCHHHHHHHHHHhC----C-CceEECcC--CCCCHHHHHHHHHHhhhHhccC
Confidence 999996554 444 368888876655553 2 34444321 11 1345677789999988664
|
| >d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Escherichia coli [TaxId: 562]
Probab=87.28 E-value=1.6 Score=36.28 Aligned_cols=68 Identities=22% Similarity=0.217 Sum_probs=49.3
Q ss_pred HHHHHHHcCcCEEEecCCccc----------cCHHHHHHHHHHHHhhcCC------CeeEEEecCccchHHHHHHHHHHc
Q psy12516 3 VASALYKMGCYEISLGDTIGV----------GTPGTMRLMLEDVLTVIPA------DRLAVHCHDTYGQALANILTAMEF 66 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~G~----------~~p~~~~~~~~~~~~~~~~------~~~~~H~h~~~g~~~~~~~~a~~a 66 (327)
.|+.+.++|+|.|.+.|+.|. .+.+.+....+.+++..|. .|++- ..+.-.++.|+...++.
T Consensus 27 ~A~~~~~agvDiiLVGDSlgmv~~G~~~T~~vt~d~mi~H~~aV~rga~~~~vv~DmPf~s--y~~~~~a~~~a~~l~~~ 104 (262)
T d1m3ua_ 27 FAKLFADEGLNVMLVGDSLGMTVQGHDSTLPVTVADIAYHTAAVRRGAPNCLLLADLPFMA--YATPEQAFENAATVMRA 104 (262)
T ss_dssp HHHHHHHHTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCTTSEEEEECCTTS--SSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHCCCCEEEEcCcHHhcccCCCCcceechHhHHHHHHHHHhccccceeEecccccc--chhhHHHHHHHHHHHhc
Confidence 466777899999999998732 4567777778888887774 23222 22344677788888899
Q ss_pred CCcEEE
Q psy12516 67 GISVFD 72 (327)
Q Consensus 67 G~~~id 72 (327)
|++.|-
T Consensus 105 GAdaVK 110 (262)
T d1m3ua_ 105 GANMVK 110 (262)
T ss_dssp TCSEEE
T ss_pred CCcEEE
Confidence 999987
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=86.74 E-value=4.7 Score=33.02 Aligned_cols=227 Identities=15% Similarity=0.099 Sum_probs=115.5
Q ss_pred HHHHHHHcCcCEEEecCCc--cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCCC
Q psy12516 3 VASALYKMGCYEISLGDTI--GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLGG 80 (327)
Q Consensus 3 ~~~~~~~~g~~~i~~~Dt~--G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~ 80 (327)
=+..+.+.|+|+|.||+.. |-+||.. .+++.+++... +| |-+-++.-++
T Consensus 12 ~a~~A~~~GAdRIELc~~l~~GGlTPS~--g~i~~~~~~~~-iP--------------------------v~vMIRPR~G 62 (247)
T d1twda_ 12 CALTAQQNGADRVELCAAPKEGGLTPSL--GVLKSVRQRVT-IP--------------------------VHPIIRPRGG 62 (247)
T ss_dssp HHHHHHHTTCSEEEECBCGGGTCBCCCH--HHHHHHHHHCC-SC--------------------------EEEBCCSSSS
T ss_pred HHHHHHHcCCCEEEEcCCcccCCCCCCH--HHHHHHHHhcC-CC--------------------------eEEEEecCCC
Confidence 4667889999999999875 8888854 34555555442 32 2234443332
Q ss_pred CCCCCCccCCCcHHHHHHHhh--hhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEee
Q psy12516 81 CPYARGASGNVATEDLVYMLE--GKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISC 158 (327)
Q Consensus 81 ~p~~~~~~gn~~~e~v~~~l~--~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~ 158 (327)
.| .-+.+++-.+.. +...+.|+|.+.+=.-.++. ..+ .+.++++++.++ |+.+. +--
T Consensus 63 -dF------~Ys~~E~~~M~~di~~~k~~G~dGvV~G~L~~dg------~iD----~~~~~~L~~~a~--~l~vT--FHR 121 (247)
T d1twda_ 63 -DF------CYSDGEFAAILEDVRTVRELGFPGLVTGVLDVDG------NVD----MPRMEKIMAAAG--PLAVT--FHR 121 (247)
T ss_dssp -CS------CCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTS------SBC----HHHHHHHHHHHT--TSEEE--ECG
T ss_pred -CC------CCCHHHHHHHHHHHHHHHHcCCCeEEEEEECCCC------Ccc----HHHHHHHHHHhc--ccCee--eeh
Confidence 11 112333333222 24455677765421111110 011 456777788775 56553 223
Q ss_pred eccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCc-cCHHHHHHHHHHHHHhcCCCeEEEeecCCcCcHHHHHHHHH
Q psy12516 159 VVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGV-GTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAM 237 (327)
Q Consensus 159 ~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~-~~P~~~~~~~~~~~~~~~~~~l~~H~Hn~~g~a~an~l~a~ 237 (327)
+| + ... ...+..+.+.+.|+++|- |+|. .+-.+-.+.++.+.+......|-. . -|.-..|.-.-+
T Consensus 122 Af----D--~~~-d~~~al~~Li~lG~~rIL---TSGg~~~a~~G~~~L~~L~~~a~~~iIm~-G---gGI~~~Ni~~l~ 187 (247)
T d1twda_ 122 AF----D--MCA-NPLYTLNNLAELGIARVL---TSGQKSDALQGLSKIMELIAHRDAPIIMA-G---AGVRAENLHHFL 187 (247)
T ss_dssp GG----G--GCS-CHHHHHHHHHHHTCCEEE---ECTTSSSTTTTHHHHHHHHTSSSCCEEEE-E---SSCCTTTHHHHH
T ss_pred hh----h--hhC-CHHHHHHHHHhcCCCeEe---ccCCCCchhHHHHHHHHHHHhcCCcEEEe-c---CCCCHHHHHHHH
Confidence 33 2 122 345556888899999876 5664 333444455566655443322211 1 133345555556
Q ss_pred HhcCceeeeccccCCCCCCCCCCCCCccHHHHHH-HHHhCCCCCCCChhhHHHHHHHHHHh
Q psy12516 238 EFGISVFDSSIAGLGGCPYARGASGNVATEDLVY-MLEGMGIETGADLTSLLRTGHYICGK 297 (327)
Q Consensus 238 ~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~-~l~~~g~~~~~d~~~l~~~~~~~~~~ 297 (327)
+.|++.++.|-..--..|+. ..|+.+.--.. ...++.+ ...|.+.+.++-+.+.+.
T Consensus 188 ~~g~~e~H~sa~~~~~s~~~---~~~~~~~~g~~~~~~e~~~-~~tD~~~V~~~~~~l~~~ 244 (247)
T d1twda_ 188 DAGVLEVHSSAGAWQASPMR---YRNQGLSMSSDEHADEYSR-YIVDGAAVAEMKGIIERH 244 (247)
T ss_dssp HHTCSEEEECCEEEECCCCC---CCC-------------CCE-EEECHHHHHHHHHHHHHH
T ss_pred HcCCCEEEECCCCcCCCcce---ecCCCcccCCCCCCCcccc-cccCHHHHHHHHHHHHHh
Confidence 78999999886644432222 12322210000 0111222 247888888887777654
|
| >d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Staphylococcus aureus [TaxId: 1280]
Probab=86.34 E-value=7.1 Score=31.51 Aligned_cols=199 Identities=16% Similarity=0.149 Sum_probs=113.2
Q ss_pred CcCEEEec-CCccccCHHHHHHHHHHHHhhcCCCeeEE--EecCccchHHHHHHHHHHcCCcEEEecccCCCCCCCCCCc
Q psy12516 11 GCYEISLG-DTIGVGTPGTMRLMLEDVLTVIPADRLAV--HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGA 87 (327)
Q Consensus 11 g~~~i~~~-Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~--H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg~~p~~~~~ 87 (327)
++|.|.+- |-..-.++..+.+++..+++...+.|+-+ ..++.. |
T Consensus 28 ~~D~vElRlD~l~~~~~~~v~~~~~~l~~~~~~~PiI~T~R~~~eG-----------------------G---------- 74 (236)
T d1sfla_ 28 AIDVLELRIDQFENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQG-----------------------G---------- 74 (236)
T ss_dssp TCSEEEEECTTSTTCCHHHHHHHHHHHC---CCSEEEEECCBGGGT-----------------------S----------
T ss_pred CCCEEEEEeccccCCCHHHHHHHHHHHHhcCCCCcEEEEEeCHHHC-----------------------C----------
Confidence 56744442 55544567777777777766544444433 111111 1
Q ss_pred cCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCC
Q psy12516 88 SGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGA 167 (327)
Q Consensus 88 ~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r 167 (327)
..+.+.++-+..+.......++|.+-+-.... +.++...+.+..++..|.++- +++.. +..-
T Consensus 75 ~~~~~~~~~~~ll~~~~~~~~~d~iDiE~~~~-------------~~~~~~~~~~~~~~~~~~~vI--~S~H~---f~~T 136 (236)
T d1sfla_ 75 YGQFTNDSYLNLISDLANINGIDMIDIEWQAD-------------IDIEKHQRIITHLQQYNKEVI--ISHHN---FEST 136 (236)
T ss_dssp CBCCCHHHHHHHHHHGGGCTTCCEEEEECCTT-------------SCHHHHHHHHHHHHHTTCEEE--EEEEE---SSCC
T ss_pred CCCCCHHHHHHHHHHHHHhcCCchhhhhhcch-------------hhHHHHHHHHHHhhcCCCEEE--EEEcC---CCCC
Confidence 12334455555555444444556554321111 014556677889999998875 44431 1222
Q ss_pred CChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh--cCCCeEEEeecCCcCcH---HHHHHHHHHhcCc
Q psy12516 168 VPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV--IPADRLAVHCHDTYGQA---LANILTAMEFGIS 242 (327)
Q Consensus 168 ~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~--~~~~~l~~H~Hn~~g~a---~an~l~a~~~G~~ 242 (327)
-+.+.+.+..+.+.+.|+|.+-++=+ .-++.++.++++...+. ....|+..- +|+ ...=+.+-..|..
T Consensus 137 P~~~el~~~~~~~~~~gaDivKia~~--~~~~~D~~~ll~~~~~~~~~~~~pii~~-----~MG~~G~~sRi~~~~~GS~ 209 (236)
T d1sfla_ 137 PPLDELQFIFFKMQKFNPEYVKLAVM--PHNKNDVLNLLQAMSTFSDTMDCKVVGI-----SMSKLGLISRTAQGVFGGA 209 (236)
T ss_dssp CCHHHHHHHHHHHHTTCCSEEEEEEC--CSSHHHHHHHHHHHHHHHHHCSSEEEEE-----ECTGGGHHHHHTGGGGTBC
T ss_pred CCHHHHHHHHHHHHHhCCCeEEEEEe--cCCHHHHHHHHHHHHHHhhccCCCEEEE-----ecCCcchHHHHHHHHhCCc
Confidence 34478999999999999998888754 34577777777654321 233455432 443 4445555667777
Q ss_pred eeeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 243 VFDSSIAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 243 ~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
..=+++ |+ |- +.|+.+++++-..|+
T Consensus 210 ~tya~~---~~-~s---APGQ~~~~~lr~~l~ 234 (236)
T d1sfla_ 210 LTYGCI---GE-PQ---APGQIDVTDLKAQVT 234 (236)
T ss_dssp EEEEBS---SC-CS---STTCCBHHHHHHHHT
T ss_pred eEEccC---CC-CC---CCCCcCHHHHHHHHh
Confidence 766665 44 33 467999999887765
|
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=85.72 E-value=2.7 Score=34.15 Aligned_cols=177 Identities=16% Similarity=0.230 Sum_probs=98.8
Q ss_pred HHHHHHHHcCcC--EEEecCCccccCHHHH--HHHHHHHHhhcCCCeeEEEecCccchHHHHHHHH-HHcCCcEEEeccc
Q psy12516 2 KVASALYKMGCY--EISLGDTIGVGTPGTM--RLMLEDVLTVIPADRLAVHCHDTYGQALANILTA-MEFGISVFDSSIA 76 (327)
Q Consensus 2 ~~~~~~~~~g~~--~i~~~Dt~G~~~p~~~--~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a-~~aG~~~id~~~~ 76 (327)
+.++++.+.|+| .+-++| |...|.-. .+.++.+++. +..++.+|..-.. ..+.+.. .++|++.|=.=.-
T Consensus 27 ~~i~~l~~~g~d~iHiDImD--G~Fvpn~t~~~~~v~~i~~~-t~~~~dvHLMv~~---P~~~i~~~~~~g~~~i~~H~E 100 (230)
T d1rpxa_ 27 EQVKAIEQAGCDWIHVDVMD--GRFVPNITIGPLVVDSLRPI-TDLPLDVHLMIVE---PDQRVPDFIKAGADIVSVHCE 100 (230)
T ss_dssp HHHHHHHHTTCCCEEEEEEB--SSSSSCBCCCHHHHHHHGGG-CCSCEEEEEESSS---HHHHHHHHHHTTCSEEEEECS
T ss_pred HHHHHHHHcCCCEEEEeCcc--CCcCCccccChHHHhhhhhc-cCceeeeeeeecc---hhhhHHHHhhcccceeEEecc
Confidence 345678888999 688888 44433321 2346667664 4588889888665 3444444 4899998642221
Q ss_pred CCCCCCCCCCccCCCcHHHHHHHhhhhhcccCcc------------------hhhhhhhhhHHHHHHhhcCChHHHHHHH
Q psy12516 77 GLGGCPYARGASGNVATEDLVYMLEGKSMQCGVK------------------EIAVFASASEMFSKRNINCTIEESLERF 138 (327)
Q Consensus 77 glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid------------------~i~l~~~~sd~~~~~~l~~s~ee~i~~~ 138 (327)
......++.++..+++.+++.|+- .+.++ .+.+.+.-. .-.++.++++
T Consensus 101 ----------~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~VllM-~V~PGf~GQ---~f~~~~~~kI 166 (230)
T d1rpxa_ 101 ----------QSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIM-SVNPGFGGQ---SFIESQVKKI 166 (230)
T ss_dssp ----------TTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEE-SSCTTCSSC---CCCTTHHHHH
T ss_pred ----------ccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEEEEE-EecCCcccc---hhhhhhHHHH
Confidence 112234666676676666666542 11111 111111111 1224567888
Q ss_pred HHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHh
Q psy12516 139 SEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTV 212 (327)
Q Consensus 139 ~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~ 212 (327)
+++.++..+++.++...+- +-.+.+ .+..+.++|+|.+... +++..-.+..+.+..+|..
T Consensus 167 ~~~~~~~~~~~~~~~I~vD--------GGIn~~----~i~~l~~~Gad~~V~G--S~if~~~d~~~~i~~lk~~ 226 (230)
T d1rpxa_ 167 SDLRKICAERGLNPWIEVD--------GGVGPK----NAYKVIEAGANALVAG--SAVFGAPDYAEAIKGIKTS 226 (230)
T ss_dssp HHHHHHHHHHTCCCEEEEE--------SSCCTT----THHHHHHHTCCEEEES--HHHHTSSCHHHHHHHHHTC
T ss_pred HHHHHHHHhcCCceEEEEE--------CCcCHH----HHHHHHHcCCCEEEEC--hHHHCCCCHHHHHHHHHHh
Confidence 8888887777766543221 224443 3456778999999775 2233223455567777653
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=85.66 E-value=6.3 Score=31.97 Aligned_cols=216 Identities=14% Similarity=0.110 Sum_probs=101.4
Q ss_pred eEEEecCcc-chHHHHHHHHH-HcCCcEEEecccCCCCCCCCCCccCCCcHHHHHHHhhhhhcccC-cchhhhhhhhhHH
Q psy12516 45 LAVHCHDTY-GQALANILTAM-EFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGKSMQCG-VKEIAVFASASEM 121 (327)
Q Consensus 45 ~~~H~h~~~-g~~~~~~~~a~-~aG~~~id~~~~glg~~p~~~~~~gn~~~e~v~~~l~~~~~~~G-id~i~l~~~~sd~ 121 (327)
++++.-..+ ...+...++.+ ++|.+.||.....+.. . .......+++...+.+.+++.. +.....+...++.
T Consensus 3 ~~~~~~~~~~~~~l~~~l~~a~~~Gf~~IEl~~~~~~~--~---~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~ 77 (278)
T d1i60a_ 3 LCFNEATTLENSNLKLDLELCEKHGYDYIEIRTMDKLP--E---YLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEK 77 (278)
T ss_dssp EEEEGGGGTTTCCHHHHHHHHHHTTCSEEEEETTTHHH--H---HTTSSCHHHHHHHHHTSSCEEEEEEEEECCSSCCHH
T ss_pred EEEeHHHhCCCCCHHHHHHHHHHHCcCEEEeCCccccc--c---ccCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCHH
Confidence 444433322 23445555555 7999999965432211 0 1122345666655555443321 1111111111110
Q ss_pred HHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCCh--------HHHHHHHHHHHHcCcCEEEe---
Q psy12516 122 FSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPP--------HNVTRVATALYKMGCYEISL--- 190 (327)
Q Consensus 122 ~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~--------e~l~~~~~~~~~~g~~~i~l--- 190 (327)
.+++.++.++..++.|++.|.+....... +.+ ...+. +.+.++++.+.+.|++. .+
T Consensus 78 --------~~~~~~~~~~~~i~~a~~lG~~~i~~~~~--~~~--~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l-~lE~~ 144 (278)
T d1i60a_ 78 --------GHNEIITEFKGMMETCKTLGVKYVVAVPL--VTE--QKIVKEEIKKSSVDVLTELSDIAEPYGVKI-ALEFV 144 (278)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHTCCEEEEECC--BCS--SCCCHHHHHHHHHHHHHHHHHHHGGGTCEE-EEECC
T ss_pred --------HHHHHHHHHHHHHHHHHHcCCCccccccc--cCC--CCCCHHHHHHHHHHHHHHHHHHHHHhCCee-eeeec
Confidence 12345788889999999999886422111 111 12222 23445555566778753 33
Q ss_pred c-CCCCccCHHHHHHHHHHHHHhcCCCeEEE---eecCCcCcHHHHHHHHHHhcCceeeec---cccCCCC----CCCCC
Q psy12516 191 G-DTIGVGTPGTMRLMLEDVLTVIPADRLAV---HCHDTYGQALANILTAMEFGISVFDSS---IAGLGGC----PYARG 259 (327)
Q Consensus 191 ~-Dt~G~~~P~~~~~~~~~~~~~~~~~~l~~---H~Hn~~g~a~an~l~a~~~G~~~vd~s---~~G~G~~----p~~~g 259 (327)
. ......++.++.+++..+. .|.+.+.+ |+|... -.....+.....=+.+|+.+ ....|.. ...+|
T Consensus 145 ~~~~~~~~~~~~~~~ll~~v~--~~~vg~~~D~~h~~~~~-~~~~~~~~~~~~~i~~vHl~D~~~~~~~~~~~~~~~~pG 221 (278)
T d1i60a_ 145 GHPQCTVNTFEQAYEIVNTVN--RDNVGLVLDSFHFHAMG-SNIESLKQADGKKIFIYHIDDTEDFPIGFLTDEDRVWPG 221 (278)
T ss_dssp CCTTBSSCSHHHHHHHHHHHC--CTTEEEEEEHHHHHHTT-CCHHHHHTSCGGGEEEEEECEECCCCTTTCCGGGEESTT
T ss_pred cccccccCCHHHHHHHHHHhh--cccccccccchhhhcCC-CCHHHHHHhccccceEEEEeecccccccccccccccCCC
Confidence 1 1234557777777766553 23333332 444221 11122211111001222221 1111110 01234
Q ss_pred CCCCccHHHHHHHHHhCCCCCCC
Q psy12516 260 ASGNVATEDLVYMLEGMGIETGA 282 (327)
Q Consensus 260 ~~Gn~~~e~~~~~l~~~g~~~~~ 282 (327)
.|+.+..+++..|++.||+-.+
T Consensus 222 -~G~id~~~~~~~l~~~gy~G~~ 243 (278)
T d1i60a_ 222 -QGAIDLDAHLSALKEIGFSDVV 243 (278)
T ss_dssp -SSSSCHHHHHHHHHHTTCCSEE
T ss_pred -CcccCHHHHHHHHHHHCCCeEE
Confidence 5899999999999998877444
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=85.13 E-value=7.9 Score=31.10 Aligned_cols=133 Identities=11% Similarity=0.066 Sum_probs=78.5
Q ss_pred cCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCCCcc---CHHHHHHHHHHHHHhcCCCeE----EE
Q psy12516 148 NGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTIGVG---TPGTMRLMLEDVLTVIPADRL----AV 220 (327)
Q Consensus 148 ~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~---~P~~~~~~~~~~~~~~~~~~l----~~ 220 (327)
.+.++...+. .|.. ..+.+.-..-++.+.+.|+|.|-+.=-.|.+ .-..+.+-++.+++..++..+ +.
T Consensus 52 ~~vkv~tVig----FP~G-~~~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt 126 (225)
T d1mzha_ 52 KKVKVCCVIG----FPLG-LNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVET 126 (225)
T ss_dssp SSSEEEEEES----TTTC-CSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCG
T ss_pred cCCceEEEec----cCCC-CCcHHHHHHHHHHHHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhhhh
Confidence 3666665444 4543 4666666666778888999988776555543 334566667777776665433 22
Q ss_pred eecCCcCcHHHHHHHHHHhcCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCCC----ChhhHHHHHHHHH
Q psy12516 221 HCHDTYGQALANILTAMEFGISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIETGA----DLTSLLRTGHYIC 295 (327)
Q Consensus 221 H~Hn~~g~a~an~l~a~~~G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~~~----d~~~l~~~~~~~~ 295 (327)
..-++-- -...+..++++|+++|-+|-+ .+ .+++++|++-.+.+..+-+.++ -...+..+-++++
T Consensus 127 ~~L~~~e-i~~a~~~a~~aGadfiKTSTG-~~--------~~gat~e~v~~m~~~~~~~~~iKasGGIrt~~~a~~~i~ 195 (225)
T d1mzha_ 127 PYLNEEE-IKKAVEICIEAGADFIKTSTG-FA--------PRGTTLEEVRLIKSSAKGRIKVKASGGIRDLETAISMIE 195 (225)
T ss_dssp GGCCHHH-HHHHHHHHHHHTCSEEECCCS-CS--------SSCCCHHHHHHHHHHHTTSSEEEEESSCCSHHHHHHHHH
T ss_pred ccCCHHH-HHHHHHHHHHcccceEeecCC-CC--------CCCCCHHHHHHHHHHhCCCceEECcCCCCCHHHHHHHHH
Confidence 2223322 245667889999999998765 33 3457777776555532222232 2334455555554
|
| >d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Dihydropteroate synthetase domain: Dihydropteroate synthetase species: Staphylococcus aureus [TaxId: 1280]
Probab=84.42 E-value=3.7 Score=34.04 Aligned_cols=72 Identities=22% Similarity=0.258 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEecCCC-CccCHHHHHHHHHHHHH
Q psy12516 133 ESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISLGDTI-GVGTPGTMRLMLEDVLT 211 (327)
Q Consensus 133 e~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~-G~~~P~~~~~~~~~~~~ 211 (327)
|-++++.++++..++.++.+.+ - + +. .++++.+.+.|++.|+ |-. |...| ++.++++.
T Consensus 61 eE~~Rl~pvi~~l~~~~~~iSI--D--------T-~~----~eVa~~al~~Ga~iIN--DVs~g~~d~-~~~~~va~--- 119 (264)
T d1ad1a_ 61 EELNRVLPVVEAIVGFDVKISV--D--------T-FR----SEVAEACLKLGVDIIN--DQWAGLYDH-RMFQVVAK--- 119 (264)
T ss_dssp HHHHHHHHHHHHHTTSSSEEEE--E--------C-SC----HHHHHHHHHTTCCEEE--ETTTTSSCT-HHHHHHHH---
T ss_pred HHHHhhhhHhhhhcccCcccch--h--------h-hh----HHHHHHHHhcCCcEee--ccccccccc-cHHHHHhh---
Confidence 3478888889888877776542 1 1 12 3677888899999875 644 55556 45554443
Q ss_pred hcCCCeEEEeecCCc
Q psy12516 212 VIPADRLAVHCHDTY 226 (327)
Q Consensus 212 ~~~~~~l~~H~Hn~~ 226 (327)
....-+-.|.+++.
T Consensus 120 -~~~~~ilmH~~~~~ 133 (264)
T d1ad1a_ 120 -YDAEIVLMHNGNGN 133 (264)
T ss_dssp -TTCEEEEECCCCTT
T ss_pred -cCcceeeeeecccc
Confidence 22223456765544
|
| >d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Thermotoga maritima [TaxId: 2336]
Probab=84.28 E-value=7.6 Score=32.01 Aligned_cols=109 Identities=13% Similarity=0.134 Sum_probs=52.8
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCC
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAV 168 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~ 168 (327)
|..+.+.+...++ ..++.|++.+-+....++. ...|.+|..+-++.+++.+ .....+.+. .+..
T Consensus 17 ~~iD~~~~~~~i~-~l~~~Gv~Gi~v~GstGE~-----~~Ls~~Er~~~~~~~~~~~-~~~~~vi~g---------v~~~ 80 (295)
T d1o5ka_ 17 GELDLESYERLVR-YQLENGVNALIVLGTTGES-----PTVNEDEREKLVSRTLEIV-DGKIPVIVG---------AGTN 80 (295)
T ss_dssp TEECHHHHHHHHH-HHHHTTCCEEEESSGGGTG-----GGCCHHHHHHHHHHHHHHH-TTSSCEEEE---------CCCS
T ss_pred CcCCHHHHHHHHH-HHHHcCCCEEEECeeccch-----hhCCHHHHHHHhhhhcccc-ccCCceEee---------cccc
Confidence 4455555444333 3356677776666555542 2344444333222222222 222333211 1124
Q ss_pred ChHHHHHHHHHHHHcCcCEEEe-cCCCCccCHHHHHHHHHHHHHhc
Q psy12516 169 PPHNVTRVATALYKMGCYEISL-GDTIGVGTPGTMRLMLEDVLTVI 213 (327)
Q Consensus 169 ~~e~l~~~~~~~~~~g~~~i~l-~Dt~G~~~P~~~~~~~~~~~~~~ 213 (327)
+.+...++++.+.+.|+|.+.+ +-.....+++++.+.++.+.+..
T Consensus 81 st~~ai~~a~~A~~~Gad~v~v~pP~y~~~s~~~i~~~~~~ia~a~ 126 (295)
T d1o5ka_ 81 STEKTLKLVKQAEKLGANGVLVVTPYYNKPTQEGLYQHYKYISERT 126 (295)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCHHHHHHHHHHHHhcc
Confidence 5556666666666666664443 23334455666666666665543
|
| >d1u83a_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Bacillus subtilis [TaxId: 1423]
Probab=82.81 E-value=0.2 Score=41.87 Aligned_cols=123 Identities=19% Similarity=0.185 Sum_probs=72.1
Q ss_pred HHHHHHHHHHcCCeEEEEEeeeccCC-CCCCCChHHHHHHHHHHHHcCcCEEEecCCCCccCHHHHHHHHHHHHHhcCCC
Q psy12516 138 FSEVVSTALTNGIRVRGYISCVVGCP-YEGAVPPHNVTRVATALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPAD 216 (327)
Q Consensus 138 ~~~~v~~a~~~Gi~v~~~l~~~~g~~-~~~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~~~~~~~~~~~~~~~~ 216 (327)
+++-++.+|++|+.|. +|.+ ++.-+....+.++.+.+.++|.+.|.+.|.+..+...+-.++++.+++.. .
T Consensus 58 L~eKI~l~~~~~V~v~------~GGtlfE~a~~~~~~~~y~~~~~~lGf~~iEiSdg~i~i~~~~~~~~I~~~~~~~--~ 129 (249)
T d1u83a_ 58 LEEKISTLKEHDITFF------FGGTLFEKYVSQKKVNEFHRYCTYFGCEYIEISNGTLPMTNKEKAAYIADFSDEF--L 129 (249)
T ss_dssp HHHHHHHHHHTTCEEE------ECHHHHHHHHHTTCHHHHHHHHHHTTCSEEEECCSSSCCCHHHHHHHHHHHTTTS--E
T ss_pred HHHHHHHHHHcCCeEe------CCCHHHHHHHHcCCHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHhcC--e
Confidence 6777999999999985 2211 11111223467778888899999999999999999999999998887643 1
Q ss_pred eEEEeecC--------CcCcHHHHHHHHHHhcCcee--eec---cccCCCCCCCCCCCCCccHHHHHHHHH
Q psy12516 217 RLAVHCHD--------TYGQALANILTAMEFGISVF--DSS---IAGLGGCPYARGASGNVATEDLVYMLE 274 (327)
Q Consensus 217 ~l~~H~Hn--------~~g~a~an~l~a~~~G~~~v--d~s---~~G~G~~p~~~g~~Gn~~~e~~~~~l~ 274 (327)
.+.=+.-- +..--+-.+...++|||+.| ++- -.|+-+ ..|+.-...+-..+.
T Consensus 130 V~sEvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiEarEsg~~Gi~~------~~g~~r~~~i~~ii~ 194 (249)
T d1u83a_ 130 VLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEARESGTGGICS------SSGDVRFQIVDDIIS 194 (249)
T ss_dssp EEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC------------------------CCHHHHHT
T ss_pred eccccCCcCccccCCCCHHHHHHHHHHHHHCCCceEEeehhccCCCCCcC------CCcchhHHHHHHHHH
Confidence 22211111 12334667788899999875 442 124444 455555444444443
|
| >d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Escherichia coli [TaxId: 562]
Probab=82.33 E-value=10 Score=30.86 Aligned_cols=204 Identities=13% Similarity=0.128 Sum_probs=114.3
Q ss_pred cccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHH-cCC--cEEEecccCCCCCCCCCCccCCCcHHHHHH
Q psy12516 22 GVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAME-FGI--SVFDSSIAGLGGCPYARGASGNVATEDLVY 98 (327)
Q Consensus 22 G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~-aG~--~~id~~~~glg~~p~~~~~~gn~~~e~v~~ 98 (327)
.-.|+.++..+.+.-++..+ ++=.-+.+-..+.-+...++ .+. -.+-+.++ .| .|+.+++.-+.
T Consensus 22 ~~~T~~~i~~lc~~A~~~~~----~~aaVCV~P~~v~~a~~~l~~~~~~~v~v~tVig----FP-----~G~~~~e~K~~ 88 (250)
T d1p1xa_ 22 DDDTDEKVIALCHQAKTPVG----NTAAICIYPRFIPIARKTLKEQGTPEIRIATVTN----FP-----HGNDDIDIALA 88 (250)
T ss_dssp TTCCHHHHHHHHHHTEETTE----ECSEEECCGGGHHHHHHHHHHTTCTTSEEEEEES----TT-----TCCSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcC----CeEEEEEChHHHHHHHHHhhhcCCCcceEEEEec----cC-----CCCccHhHHHH
Confidence 55678888887775544211 33344444444555555553 332 22333332 22 25566665443
Q ss_pred HhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHH-HHHH
Q psy12516 99 MLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNV-TRVA 177 (327)
Q Consensus 99 ~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l-~~~~ 177 (327)
-. +.+++.|.|.+-+....+... -+ ..+...+.+..+.+.++..|..+.+.+... ..+.+++ ...+
T Consensus 89 E~-~~Ai~~GAdEID~Vin~~~l~----~g-~~~~v~~ei~~v~~~~~~~~~~lKVIlEt~-------~Ltd~e~i~~a~ 155 (250)
T d1p1xa_ 89 ET-RAAIAYGADEVDVVFPYRALM----AG-NEQVGFDLVKACKEACAAANVLLKVIIETG-------ELKDEALIRKAS 155 (250)
T ss_dssp HH-HHHHHHTCSEEEEECCHHHHH----TT-CCHHHHHHHHHHHHHHHHTTCEEEEECCHH-------HHCSHHHHHHHH
T ss_pred HH-HHHHHcCCCeEEEeecchhhc----cc-cHHHHHHHHHHHHHhhccCCceEEEEEecc-------ccCcHHHHHHHH
Confidence 22 345777877776654443321 11 123334567777778888999887766642 2444555 4677
Q ss_pred HHHHHcCcCEEEecCCCC----ccCHHHHHHHHHHHHHhcCCCeEEEeecC---CcCcHHHHHHHHH-HhcCceeeeccc
Q psy12516 178 TALYKMGCYEISLGDTIG----VGTPGTMRLMLEDVLTVIPADRLAVHCHD---TYGQALANILTAM-EFGISVFDSSIA 249 (327)
Q Consensus 178 ~~~~~~g~~~i~l~Dt~G----~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn---~~g~a~an~l~a~-~~G~~~vd~s~~ 249 (327)
+.+.+.|+|-| +-++| ..+|+++..+...++..-...++++..-- ++-.|.+-..++. +.|.+|++....
T Consensus 156 ~ia~~aGadFv--KTSTG~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~iG~~~~~~~~f 233 (250)
T d1p1xa_ 156 EISIKAGADFI--KTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHY 233 (250)
T ss_dssp HHHHHTTCSEE--ECCCSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHHCTTSCSTTTB
T ss_pred HHHHHcCcCeE--EecCCcCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHHHHhCccccccCce
Confidence 88899999965 55555 46788888888888764322356665543 2222222222222 246677777777
Q ss_pred cCCC
Q psy12516 250 GLGG 253 (327)
Q Consensus 250 G~G~ 253 (327)
-+|-
T Consensus 234 RiGa 237 (250)
T d1p1xa_ 234 RFGA 237 (250)
T ss_dssp CEEE
T ss_pred eeeH
Confidence 5554
|
| >d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (2r)-phospho-3-sulfolactate synthase ComA family: (2r)-phospho-3-sulfolactate synthase ComA domain: (2r)-phospho-3-sulfolactate synthase ComA species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=82.16 E-value=3.1 Score=34.29 Aligned_cols=53 Identities=9% Similarity=0.058 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHcCCeEEEEEeeeccCCCCCCCChHHHHHHHHHHHHcCcCEEEe
Q psy12516 137 RFSEVVSTALTNGIRVRGYISCVVGCPYEGAVPPHNVTRVATALYKMGCYEISL 190 (327)
Q Consensus 137 ~~~~~v~~a~~~Gi~v~~~l~~~~g~~~~~r~~~e~l~~~~~~~~~~g~~~i~l 190 (327)
...++++.+++.|++|-.-+..-+..+ ....+++.+.+.++...++|++.|.+
T Consensus 115 ~~~~~I~~~~~~G~~V~~EvG~K~~~~-~~~~~~~~~i~~~~~~LeaGA~~Vii 167 (251)
T d1qwga_ 115 ERNNAIKRAKDNGFMVLTEVGKKMPDK-DKQLTIDDRIKLINFDLDAGADYVII 167 (251)
T ss_dssp HHHHHHHHHHHTTCEEEEEECCSSHHH-HTTCCHHHHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHhCCCEEeecccCCCCCC-ccccCHHHHHHHHHHHHHCCCceeEe
Confidence 345677777888887643222111001 12466777788888888888876655
|
| >d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: UROD/MetE-like family: Uroporphyrinogen decarboxylase, UROD domain: Uroporphyrinogen decarboxylase, UROD species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]
Probab=82.11 E-value=1.4 Score=38.07 Aligned_cols=52 Identities=12% Similarity=0.137 Sum_probs=36.5
Q ss_pred HHHHHHHHcCcCEEEecCCCCcc-CHHHH--------HHHHHHHHHhcCCCeEEEeecCCc
Q psy12516 175 RVATALYKMGCYEISLGDTIGVG-TPGTM--------RLMLEDVLTVIPADRLAVHCHDTY 226 (327)
Q Consensus 175 ~~~~~~~~~g~~~i~l~Dt~G~~-~P~~~--------~~~~~~~~~~~~~~~l~~H~Hn~~ 226 (327)
+.++...++|++.|.+.|+.+.. .|... .+++..+++..+..++..|+++..
T Consensus 187 ~~~~~qi~aGad~i~ifDs~a~~l~~~~f~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 247 (343)
T d1j93a_ 187 KYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSG 247 (343)
T ss_dssp HHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEEEECSSCT
T ss_pred HHHHHHhccCCceEEeccHHHHHHhhHhhhhhccHHHHHHHhhhhhcCCCCceeeeccccc
Confidence 44455667899999999998875 55433 334556666667778888888754
|
| >d1w3ia_ c.1.10.1 (A:) 2-keto-3-deoxy gluconate aldolase Eda {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: 2-keto-3-deoxy gluconate aldolase Eda species: Sulfolobus solfataricus [TaxId: 2287]
Probab=81.34 E-value=9.9 Score=31.30 Aligned_cols=99 Identities=17% Similarity=0.199 Sum_probs=68.9
Q ss_pred CCCChHHHHHHHHHHHHcCcCEEEecCCCC---ccCHHHHHHHHHHHHHhcCCCeEEEeecC-CcCcHHHHHHHHHHhcC
Q psy12516 166 GAVPPHNVTRVATALYKMGCYEISLGDTIG---VGTPGTMRLMLEDVLTVIPADRLAVHCHD-TYGQALANILTAMEFGI 241 (327)
Q Consensus 166 ~r~~~e~l~~~~~~~~~~g~~~i~l~Dt~G---~~~P~~~~~~~~~~~~~~~~~~l~~H~Hn-~~g~a~an~l~a~~~G~ 241 (327)
+..|.+-+.+.++.+.+.|++.|.+..|+| .+++++-.++++...+.... +..+... +..-++.-+..|.++|+
T Consensus 15 g~iD~~~~~~~i~~l~~~Gv~gi~~~GttGE~~~Ls~~Er~~~~~~~~~~~~~--~i~gv~~~st~~~i~~a~~a~~~Ga 92 (293)
T d1w3ia_ 15 NRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK--IIFQVGGLNLDDAIRLAKLSKDFDI 92 (293)
T ss_dssp SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC--EEEECCCSCHHHHHHHHHHGGGSCC
T ss_pred cCCCHHHHHHHHHHHHHcCCCEEEECeechhhhhCCHHHHHHHHHHHHhhccc--cccccccchhhhhhhhhhhhhhhcc
Confidence 478999999999999999999999999999 58888888888877765443 3444433 33445555666777888
Q ss_pred ceeeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q psy12516 242 SVFDSSIAGLGGCPYARGASGNVATEDLVYMLEG 275 (327)
Q Consensus 242 ~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~ 275 (327)
+.+-.. .|+.. ..++-++++.+++.
T Consensus 93 ~~~~~~------~P~~~---~~~~~~~i~~~f~~ 117 (293)
T d1w3ia_ 93 VGIASY------APYYY---PRMSEKHLVKYFKT 117 (293)
T ss_dssp SEEEEE------CCCSC---SSCCHHHHHHHHHH
T ss_pred cccccc------ccchh---ccchHHHHHHHHHH
Confidence 876332 13222 24566777776663
|
| >d1o66a_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Ketopantoate hydroxymethyltransferase PanB domain: Ketopantoate hydroxymethyltransferase PanB species: Neisseria meningitidis [TaxId: 487]
Probab=81.28 E-value=5.1 Score=33.07 Aligned_cols=109 Identities=19% Similarity=0.171 Sum_probs=71.2
Q ss_pred HHHHHHHHcCcCEEEecCCCC----------ccCHHHHHHHHHHHHHhcCCCeEEEeec-----CCcCcHHHHHHHHHHh
Q psy12516 175 RVATALYKMGCYEISLGDTIG----------VGTPGTMRLMLEDVLTVIPADRLAVHCH-----DTYGQALANILTAMEF 239 (327)
Q Consensus 175 ~~~~~~~~~g~~~i~l~Dt~G----------~~~P~~~~~~~~~~~~~~~~~~l~~H~H-----n~~g~a~an~l~a~~~ 239 (327)
..++.+.++|+|.|.+.||.| ..+.+++..-.+.+++..|..-+....- +..-.+..|+...+++
T Consensus 26 ~~A~~ae~agiDiilVGDSlgm~~~G~~~T~~vt~d~mi~h~~aV~rga~~~~~i~dmPf~sy~~~~~~~~~a~~~~~~~ 105 (260)
T d1o66a_ 26 SFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGAKNAMIVSDLPFGAYQQSKEQAFAAAAELMAA 105 (260)
T ss_dssp HHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHCSSSEEEEECCTTSSSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCEEEEcCCchheecCCCCccccchhhhhhhhHHHHccCcceeeecchhhhhhcchhHHHHHHHHHHHHh
Confidence 557778899999999999876 3456777777888888887755554432 2223345566667788
Q ss_pred cCceeeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC----C------------------CChhhHHHHHHHHHHh
Q psy12516 240 GISVFDSSIAGLGGCPYARGASGNVATEDLVYMLEGMGIET----G------------------ADLTSLLRTGHYICGK 297 (327)
Q Consensus 240 G~~~vd~s~~G~G~~p~~~g~~Gn~~~e~~~~~l~~~g~~~----~------------------~d~~~l~~~~~~~~~~ 297 (327)
|++.|-. .|...+.+++..|.+.|+.+ | -+-.+|.+.++.+++.
T Consensus 106 gadavk~--------------eg~~~~~~~i~~l~~~gIPV~gHiGl~Pq~~~~~gG~r~~Gk~~e~~~l~~~a~~le~A 171 (260)
T d1o66a_ 106 GAHMVKL--------------EGGVWMAETTEFLQMRGIPVCAHIGLTPQSVFAFGGYKVQGRGGKAQALLNDAKAHDDA 171 (260)
T ss_dssp TCSEEEE--------------ECSGGGHHHHHHHHHTTCCEEEEEESCGGGTTC-----------CHHHHHHHHHHHHHT
T ss_pred hhhhccc--------------cchhhhhHHHHHHHHcCCeeEeecccccchheecCcceeccccchhHHHHHHHHHHHHh
Confidence 9997764 23455556676776655331 0 2335577777777763
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=81.09 E-value=7.1 Score=32.14 Aligned_cols=123 Identities=15% Similarity=0.138 Sum_probs=74.7
Q ss_pred HHHHHHHHcCcCEEEec-CCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHc--CCcEEEecccCC
Q psy12516 2 KVASALYKMGCYEISLG-DTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEF--GISVFDSSIAGL 78 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~-Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~a--G~~~id~~~~gl 78 (327)
+.|++..+.|++.|-+. +..|.-.+..+.++++.+.... ++|+.+-+-+- .-+-+|+++ |...|.. +++.
T Consensus 44 ~~A~~qv~~GA~iLDIn~~~~~~~e~~~m~~li~~l~~~~-d~PlsIDT~~~-----~v~eaaLk~~~G~~iINs-is~e 116 (260)
T d3bofa1 44 KEAKTQVEKGAEVLDVNFGIESQIDVRYVEKIVQTLPYVS-NVPLSLDIQNV-----DLTERALRAYPGRSLFNS-AKVD 116 (260)
T ss_dssp HHHHHHHHTTCSEEEEECSSGGGSCHHHHHHHHHHHHHHT-CSCEEEECCCH-----HHHHHHHHHCSSCCEEEE-EESC
T ss_pred HHHHHHHHcCCCEEEeecCCchhhhHHHHHHHHHHHHhcC-CCCccccCCCH-----HHHHHHHHHhcCcceEee-cccc
Confidence 57888999999998886 3457777888888899888876 48877765543 345566776 8887763 3322
Q ss_pred CCCCCCCCccCCCcHHHHHHHhhhhhcccCcchhhhhhhhhHHHHHHhhcCChHHHHHHHHHHHHHHHHcCCeEE
Q psy12516 79 GGCPYARGASGNVATEDLVYMLEGKSMQCGVKEIAVFASASEMFSKRNINCTIEESLERFSEVVSTALTNGIRVR 153 (327)
Q Consensus 79 g~~p~~~~~~gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd~~~~~~l~~s~ee~i~~~~~~v~~a~~~Gi~v~ 153 (327)
.+ ..+.++.+.+ +.|...+.+.. ++ ..-.+.++..+.+++.++.+.+.|+.-+
T Consensus 117 ~~-----------~~~~~~~l~~----~yga~vI~l~~--d~-----g~p~~~~er~~~~~~~~~~~~~~g~~e~ 169 (260)
T d3bofa1 117 EE-----------ELEMKINLLK----KYGGTLIVLLM--GK-----DVPKSFEERKEYFEKALKILERHDFSDR 169 (260)
T ss_dssp HH-----------HHHHHHHHHH----HHCCEEEEESC--SS-----SCCCSHHHHHHHHHHHHHHHHHTTCGGG
T ss_pred cc-----------hHHHHHHHHH----hcCCCEEEEec--CC-----cccccHHHHHHHHHHHHHHHHhcCCcHh
Confidence 21 1233444333 33333333221 00 1123444556667777788888887433
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.07 E-value=1.5 Score=33.98 Aligned_cols=70 Identities=16% Similarity=0.008 Sum_probs=54.6
Q ss_pred HHHHHHHHcCcCEEEecCCccccCHHHHHHHHHHHHhhcCCCeeEEEecCccchHHHHHHHHHHcCCcEEEecccCCC
Q psy12516 2 KVASALYKMGCYEISLGDTIGVGTPGTMRLMLEDVLTVIPADRLAVHCHDTYGQALANILTAMEFGISVFDSSIAGLG 79 (327)
Q Consensus 2 ~~~~~~~~~g~~~i~~~Dt~G~~~p~~~~~~~~~~~~~~~~~~~~~H~h~~~g~~~~~~~~a~~aG~~~id~~~~glg 79 (327)
+.++++.+.|+|.|-| | -++|+++++.++.++...|.+.++.- -|....|+.+..+.|+|.|.++.--.+
T Consensus 90 ~q~~~a~~~~~diImL-D---N~sp~~~k~~v~~~~~~~~~i~lEaS----GgI~~~ni~~ya~~GvD~IS~galt~s 159 (169)
T d1qpoa1 90 EQLDAVLPEKPELILL-D---NFAVWQTQTAVQRRDSRAPTVMLESS----GGLSLQTAATYAETGVDYLAVGALTHS 159 (169)
T ss_dssp HHHHHHGGGCCSEEEE-E---TCCHHHHHHHHHHHHHHCTTCEEEEE----SSCCTTTHHHHHHTTCSEEECGGGTSS
T ss_pred HHhhhhhhcCCcEEEe-c---CcChHhHHHHHHHhhccCCeeEEEEe----CCCCHHHHHHHHHcCCCEEECCccccC
Confidence 5678888999998764 5 56999999999999888877667664 344556788888999999998765444
|
| >d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Escherichia coli [TaxId: 562]
Probab=80.69 E-value=6.7 Score=32.41 Aligned_cols=31 Identities=23% Similarity=0.391 Sum_probs=16.2
Q ss_pred CCCcHHHHHHHhhhhhcccCcchhhhhhhhhH
Q psy12516 89 GNVATEDLVYMLEGKSMQCGVKEIAVFASASE 120 (327)
Q Consensus 89 gn~~~e~v~~~l~~~~~~~Gid~i~l~~~~sd 120 (327)
|..+.+.+...+ +..++.|++.+-+....++
T Consensus 17 ~~iD~~~~~~~i-~~l~~~Gv~Gl~~~GstGE 47 (292)
T d2a6na1 17 GNVCRASLKKLI-DYHVASGTSAIVSVGTTGE 47 (292)
T ss_dssp SSBCHHHHHHHH-HHHHHHTCCEEEESSTTTT
T ss_pred CCCCHHHHHHHH-HHHHHcCCCEEEECeeccc
Confidence 456655554433 2335566666655554444
|