Psyllid ID: psy12526

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100---
Protein Sequence
MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI
Secondary Structure (PSIPRED)
ccccccccccccccccccccEEEEEccccccccccEEEEcccEEEcccccccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEEcccEEEccccEEEEEcccccccccccEEEEEccEEcccccccccccHHHHHHHHcHHHHHHHHccccEEEEEEccccccccEEcccccccccc
Coil and Loop (DISEMBL)
mpsrdttrvylptakqVRKQTTyltgtgrshlkppktfafdhcfysldpnlpnfasqEKVFDALGRDILDNAFQGYNACIFAYgqtgektnyllngngpfpli
Flexible Loop (DISEMBL)
mpsrdttrvylptakqvrkqttyltgtgrshlkpPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNyllngngpfpli
Low Complexity Region (SEG)
MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI
Disordered region (IsUnstruct)
*******************QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN********
Disordered Region (DISOPRED)
************************************TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP****
Disordered Region (DISEMBL)
********VYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI
Disordered Region (DISPRO)
***RDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKT*************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	103	2.2.26 [Sep-21-2011]
Q9H1H9	1805	Kinesin-like protein KIF1	yes	N/A	0.718	0.040	0.533	7e-18
Q9EQW7	1749	Kinesin-like protein KIF1	yes	N/A	0.718	0.042	0.533	8e-18
B1AVY7	1312	Kinesin-like protein KIF1	no	N/A	0.796	0.062	0.471	1e-17
Q96L93	1317	Kinesin-like protein KIF1	no	N/A	0.796	0.062	0.471	1e-17
Q9NQT8	1826	Kinesin-like protein KIF1	no	N/A	0.650	0.036	0.544	4e-16
P23678	1584	Kinesin-like protein unc-	no	N/A	0.815	0.053	0.441	3e-14
Q9NGQ2	2205	Kinesin-related protein 1	yes	N/A	0.660	0.030	0.472	2e-13
O88658	1816	Kinesin-like protein KIF1	no	N/A	0.601	0.034	0.492	6e-13
Q60575	1816	Kinesin-like protein KIF1	no	N/A	0.601	0.034	0.492	6e-13
O60333	1816	Kinesin-like protein KIF1	no	N/A	0.601	0.034	0.492	6e-13

>sp|Q9H1H9|KI13A_HUMAN Kinesin-like protein KIF13A OS=Homo sapiens GN=KIF13A PE=1 SV=2

 Score = 89.4 bits (220), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 25  TGTGRSHLKPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
           + T +   KPPK FAFD+CF+S+D  N   +A QE VF  LG  IL+ AFQGYNACIFAY
Sbjct: 42  SNTKQGERKPPKVFAFDYCFWSMDESNTTKYAGQEVVFKCLGEGILEKAFQGYNACIFAY 101

Query: 84  GQTGEKTNYLLNGNG 98
           GQTG   ++ + G+ 
Sbjct: 102 GQTGSGKSFSMMGHA 116

Plus end-directed microtubule-dependent motor protein involved in intracellular transport and regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis and cytokinesis. Mediates the transport of M6PR-containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex. During melanosome maturation, required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. Also required for the abcission step in cytokinesis: mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis.
Homo sapiens (taxid: 9606)

>sp|Q9EQW7|KI13A_MOUSE Kinesin-like protein KIF13A OS=Mus musculus GN=Kif13a PE=1 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 40/75 (53%), Positives = 51/75 (68%), Gaps = 1/75 (1%)

Query: 25  TGTGRSHLKPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
           + T +   KPPK FAFD+CF+S+D  N   +A QE VF  LG  IL+ AFQGYNACIFAY
Sbjct: 42  SNTKQGERKPPKVFAFDYCFWSMDESNTTKYAGQEVVFKCLGEGILEKAFQGYNACIFAY 101

Query: 84  GQTGEKTNYLLNGNG 98
           GQTG   ++ + G+ 
Sbjct: 102 GQTGSGKSFSMMGHA 116

Plus end-directed microtubule-dependent motor protein involved in intracellular transport and regulating various processes such as mannose-6-phosphate receptor (M6PR) transport to the plasma membrane, endosomal sorting during melanosome biogenesis and cytokinesis. During melanosome maturation, required for delivering melanogenic enzymes from recycling endosomes to nascent melanosomes by creating peripheral recycling endosomal subdomains in melanocytes. Also required for the abcission step in cytokinesis: mediates translocation of ZFYVE26, and possibly TTC19, to the midbody during cytokinesis (By similarity). Mediates the transport of M6PR-containing vesicles from trans-Golgi network to the plasma membrane via direct interaction with the AP-1 complex.

Mus musculus (taxid: 10090)

>sp|B1AVY7|KI16B_MOUSE Kinesin-like protein KIF16B OS=Mus musculus GN=Kif16b PE=1 SV=1

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 7/89 (7%)

Query: 16  QVRKQTTYLT-------GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDI 68
           Q+ K  T +T       GTG S  +  KTF +D  FYS D   P++ SQE VF  LG D+
Sbjct: 27  QMEKSKTTITNLKIPEGGTGDSGRERTKTFTYDFSFYSADTKSPDYVSQEMVFKTLGTDV 86

Query: 69  LDNAFQGYNACIFAYGQTGEKTNYLLNGN 97
           + +AF+GYNAC+FAYGQTG   +Y + GN
Sbjct: 87  VKSAFEGYNACVFAYGQTGSGKSYTMMGN 115

Plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. Regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development.

Mus musculus (taxid: 10090)

>sp|Q96L93|KI16B_HUMAN Kinesin-like protein KIF16B OS=Homo sapiens GN=KIF16B PE=1 SV=2

 Score = 88.6 bits (218), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 42/89 (47%), Positives = 55/89 (61%), Gaps = 7/89 (7%)

Query: 16  QVRKQTTYLT-------GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDI 68
           Q+ K  T +T       GTG S  +  KTF +D  FYS D   P++ SQE VF  LG D+
Sbjct: 27  QMEKSKTTITNLKIPEGGTGDSGRERTKTFTYDFSFYSADTKSPDYVSQEMVFKTLGTDV 86

Query: 69  LDNAFQGYNACIFAYGQTGEKTNYLLNGN 97
           + +AF+GYNAC+FAYGQTG   +Y + GN
Sbjct: 87  VKSAFEGYNACVFAYGQTGSGKSYTMMGN 115

Plus end-directed microtubule-dependent motor protein involved in endosome transport and receptor recycling and degradation. Regulates the plus end motility of early endosomes and the balance between recycling and degradation of receptors such as EGF receptor (EGFR) and FGF receptor (FGFR). Regulates the Golgi to endosome transport of FGFR-containing vesicles during early development, a key process for developing basement membrane and epiblast and primitive endoderm lineages during early postimplantation development.

Homo sapiens (taxid: 9606)

>sp|Q9NQT8|KI13B_HUMAN Kinesin-like protein KIF13B OS=Homo sapiens GN=KIF13B PE=1 SV=1

 Score = 83.6 bits (205), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 1/68 (1%)

Query: 35  PKTFAFDHCFYSLDPNLP-NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
           PK FA+DHCF+S+D ++   +A Q+ VF  LG +IL NAF GYNACIFAYGQTG   +Y 
Sbjct: 53  PKCFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYT 112

Query: 94  LNGNGPFP 101
           + G    P
Sbjct: 113 MMGTADQP 120

Involved in reorganization of the cortical cytoskeleton. Regulates axon formation by promoting the formation of extra axons. May be functionally important for the intracellular trafficking of MAGUKs and associated protein complexes.

Homo sapiens (taxid: 9606)

>sp|P23678|UN104_CAEEL Kinesin-like protein unc-104 OS=Caenorhabditis elegans GN=unc-104 PE=2 SV=3

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 38/86 (44%), Positives = 54/86 (62%), Gaps = 2/86 (2%)

Query: 16  QVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQG 75
           QV   TT  T  G S  K   +F FDH ++S   N P+F +Q++V++ LG ++L++AF+G
Sbjct: 27  QVNGNTT--TINGHSINKENFSFNFDHSYWSFARNDPHFITQKQVYEELGVEMLEHAFEG 84

Query: 76  YNACIFAYGQTGEKTNYLLNGNGPFP 101
           YN CIFAYGQTG   +Y + G    P
Sbjct: 85  YNVCIFAYGQTGSGKSYTMMGKANDP 110

Involved in microtubule-associated transport.

Caenorhabditis elegans (taxid: 6239)

>sp|Q9NGQ2|KIF1_DICDI Kinesin-related protein 1 OS=Dictyostelium discoideum GN=kif1 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 34/72 (47%), Positives = 49/72 (68%), Gaps = 4/72 (5%)

Query: 36  KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
           K+F+FD+ ++S D N P+FASQ  V++ LG+++L NA+ G+N  IFAYGQTG   +Y + 
Sbjct: 54  KSFSFDYSYWSYDSNDPHFASQSTVYNDLGKEVLKNAWDGFNCSIFAYGQTGSGKSYSMM 113

Query: 96  G----NGPFPLI 103
           G     G  PLI
Sbjct: 114 GYGEEKGIIPLI 125

Microtubule-associated force-producing protein that plays a role in organelle transport. Its motor activity is directed toward the microtubule's plus end. Transports cytoplasmic vesicles and particularly phosphatidylinositol 4,5-bisphosphate-containing liposomes along microtubules.

Dictyostelium discoideum (taxid: 44689)

>sp|O88658|KIF1B_RAT Kinesin-like protein KIF1B OS=Rattus norvegicus GN=Kif1b PE=1 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 35  PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
           PK+F+FD+ ++S   P  P FASQ +V++ +G+++L +AF+GYN CIFAYGQTG   +Y 
Sbjct: 47  PKSFSFDYSYWSHTSPEDPCFASQSRVYNDIGKEMLLHAFEGYNVCIFAYGQTGAGKSYT 106

Query: 94  LNG 96
           + G
Sbjct: 107 MMG 109

Isoform 1 mediates the transport of synaptic vesicles in neuronal cells.

Rattus norvegicus (taxid: 10116)

>sp|Q60575|KIF1B_MOUSE Kinesin-like protein KIF1B OS=Mus musculus GN=Kif1b PE=1 SV=2

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 35  PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
           PK+F+FD+ ++S   P  P FASQ +V++ +G+++L +AF+GYN CIFAYGQTG   +Y 
Sbjct: 47  PKSFSFDYSYWSHTSPEDPCFASQNRVYNDIGKEMLLHAFEGYNVCIFAYGQTGAGKSYT 106

Query: 94  LNG 96
           + G
Sbjct: 107 MMG 109

Motor for anterograde transport of mitochondria. Has a microtubule plus end-directed motility.

Mus musculus (taxid: 10090)

>sp|O60333|KIF1B_HUMAN Kinesin-like protein KIF1B OS=Homo sapiens GN=KIF1B PE=1 SV=5

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 31/63 (49%), Positives = 47/63 (74%), Gaps = 1/63 (1%)

Query: 35  PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
           PK+F+FD+ ++S   P  P FASQ +V++ +G+++L +AF+GYN CIFAYGQTG   +Y 
Sbjct: 47  PKSFSFDYSYWSHTSPEDPCFASQNRVYNDIGKEMLLHAFEGYNVCIFAYGQTGAGKSYT 106

Query: 94  LNG 96
           + G
Sbjct: 107 MMG 109

Motor for anterograde transport of mitochondria. Has a microtubule plus end-directed motility. Isoform 2 is required for induction of neuronal apoptosis.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
383858251	2117	PREDICTED: kinesin-like protein KIF13B-l	0.621	0.030	0.812	2e-25
350416890	1909	PREDICTED: kinesin-like protein KIF13B-l	0.747	0.040	0.675	5e-25
332019903	1860	Kinesin-like protein KIF13A [Acromyrmex	0.621	0.034	0.812	1e-24
340719864	1905	PREDICTED: kinesin-like protein KIF13B-l	0.621	0.033	0.781	3e-24
380022445	1876	PREDICTED: kinesin-like protein KIF13B,	0.621	0.034	0.781	7e-24
328780639	1929	PREDICTED: kinesin 3A [Apis mellifera]	0.621	0.033	0.781	7e-24
270015064	1824	hypothetical protein TcasGA2_TC014226 [T	0.796	0.044	0.623	1e-23
189233780	1837	PREDICTED: similar to Kinesin-73 CG8183-	0.796	0.044	0.623	1e-23
157120303	1788	kinesin [Aedes aegypti] gi|108883110|gb|	0.631	0.036	0.753	2e-23
195172686	484	GL20037 [Drosophila persimilis] gi|19411	0.631	0.134	0.753	3e-23

>gi|383858251|ref|XP_003704615.1| PREDICTED: kinesin-like protein KIF13B-like [Megachile rotundata]

 Score =  119 bits (299), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/64 (81%), Positives = 57/64 (89%)

Query: 35  PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94
           PKTFAFDHCF+SLDP+L NFASQE VFDALGRDILDNAFQGYNACIFAYGQTG   +Y +
Sbjct: 238 PKTFAFDHCFHSLDPSLENFASQEVVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 297

Query: 95  NGNG 98
            G+G
Sbjct: 298 MGSG 301

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350416890|ref|XP_003491154.1| PREDICTED: kinesin-like protein KIF13B-like [Bombus impatiens]

 Score =  118 bits (295), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 52/77 (67%), Positives = 60/77 (77%)

Query: 22 TYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIF 81
          +Y  G   +    PKTFAFDHCFYSLDP + NFA+Q+ VFDALGRDILDNAFQGYNACIF
Sbjct: 17 SYFYGQNGNEWSKPKTFAFDHCFYSLDPAVENFANQDVVFDALGRDILDNAFQGYNACIF 76

Query: 82 AYGQTGEKTNYLLNGNG 98
          AYGQTG   +Y + G+G
Sbjct: 77 AYGQTGSGKSYTMMGSG 93

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019903|gb|EGI60364.1| Kinesin-like protein KIF13A [Acromyrmex echinatior]

 Score =  117 bits (293), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 52/64 (81%), Positives = 55/64 (85%)

Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94
          PKTFAFDHCFYSLDP   NFASQE VFDALGRDILDNAFQGYNACIFAYGQTG   +Y +
Sbjct: 12 PKTFAFDHCFYSLDPGADNFASQEIVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 71

Query: 95 NGNG 98
           G+G
Sbjct: 72 MGSG 75

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340719864|ref|XP_003398365.1| PREDICTED: kinesin-like protein KIF13B-like [Bombus terrestris]

 Score =  115 bits (288), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/64 (78%), Positives = 56/64 (87%)

Query: 35  PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94
           PKTFAFDHCFYSLDP + NFA+Q+ VFDALGRDILDNAFQGYNACIFAYGQTG   +Y +
Sbjct: 51  PKTFAFDHCFYSLDPAVENFANQDVVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 110

Query: 95  NGNG 98
            G+G
Sbjct: 111 MGSG 114

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380022445|ref|XP_003695056.1| PREDICTED: kinesin-like protein KIF13B, partial [Apis florea]

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/64 (78%), Positives = 55/64 (85%)

Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94
          PKTFAFDHCFYSLDP   NFA+Q+ VFDALGRDILDNAFQGYNACIFAYGQTG   +Y +
Sbjct: 3  PKTFAFDHCFYSLDPAAENFANQDVVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 62

Query: 95 NGNG 98
           G+G
Sbjct: 63 MGSG 66

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328780639|ref|XP_003249835.1| PREDICTED: kinesin 3A [Apis mellifera]

 Score =  114 bits (285), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 50/64 (78%), Positives = 55/64 (85%)

Query: 35  PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94
           PKTFAFDHCFYSLDP   NFA+Q+ VFDALGRDILDNAFQGYNACIFAYGQTG   +Y +
Sbjct: 51  PKTFAFDHCFYSLDPAAENFANQDVVFDALGRDILDNAFQGYNACIFAYGQTGSGKSYTM 110

Query: 95  NGNG 98
            G+G
Sbjct: 111 MGSG 114

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270015064|gb|EFA11512.1| hypothetical protein TcasGA2_TC014226 [Tribolium castaneum]

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/85 (62%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 16  QVRKQTTYL---TGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNA 72
           ++ KQ T L   T   +   KPPK+FAFDHCF S+DP +  FASQE VFD LGRDILDNA
Sbjct: 29  KMEKQQTLLQQPTTLDKMERKPPKSFAFDHCFCSVDPTMEGFASQEVVFDCLGRDILDNA 88

Query: 73  FQGYNACIFAYGQTGEKTNYLLNGN 97
           FQGYNACIFAYGQTG   +Y + G+
Sbjct: 89  FQGYNACIFAYGQTGSGKSYTMMGS 113

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189233780|ref|XP_001814557.1| PREDICTED: similar to Kinesin-73 CG8183-PB [Tribolium castaneum]

 Score =  113 bits (283), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 53/85 (62%), Positives = 62/85 (72%), Gaps = 3/85 (3%)

Query: 16  QVRKQTTYL---TGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNA 72
           ++ KQ T L   T   +   KPPK+FAFDHCF S+DP +  FASQE VFD LGRDILDNA
Sbjct: 29  KMEKQQTLLQQPTTLDKMERKPPKSFAFDHCFCSVDPTMEGFASQEVVFDCLGRDILDNA 88

Query: 73  FQGYNACIFAYGQTGEKTNYLLNGN 97
           FQGYNACIFAYGQTG   +Y + G+
Sbjct: 89  FQGYNACIFAYGQTGSGKSYTMMGS 113

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157120303|ref|XP_001653597.1| kinesin [Aedes aegypti] gi|108883110|gb|EAT47335.1| AAEL001582-PA, partial [Aedes aegypti]

 Score =  112 bits (281), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 49/65 (75%), Positives = 53/65 (81%)

Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92
          KPPK FAFDHCFYS DP+  NFASQE VF  +GRDILDNAFQGYNACIFAYGQTG   +Y
Sbjct: 1  KPPKIFAFDHCFYSTDPDADNFASQELVFANMGRDILDNAFQGYNACIFAYGQTGSGKSY 60

Query: 93 LLNGN 97
           + GN
Sbjct: 61 TMMGN 65

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195172686|ref|XP_002027127.1| GL20037 [Drosophila persimilis] gi|194112940|gb|EDW34983.1| GL20037 [Drosophila persimilis]

 Score =  112 bits (280), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 49/65 (75%), Positives = 54/65 (83%)

Query: 33  KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92
           K PKTFAFDHCFYSL+P   NFASQE VFD +GRDILDNAFQGYNACIFAYGQTG   +Y
Sbjct: 49  KQPKTFAFDHCFYSLNPEDDNFASQETVFDCVGRDILDNAFQGYNACIFAYGQTGSGKSY 108

Query: 93  LLNGN 97
            + G+
Sbjct: 109 TMMGS 113

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	103
FB|FBgn0019968	1921	Khc-73 "Kinesin-73" [Drosophil	0.786	0.042	0.619	7.6e-21
UNIPROTKB|H3BNE9	1845	KIF13A "Kinesin-like protein K	0.708	0.039	0.540	8.7e-17
UNIPROTKB|F1RJP9	1851	KIF13B "Uncharacterized protei	0.757	0.042	0.524	5.7e-16
UNIPROTKB|I3LEQ5	412	I3LEQ5 "Uncharacterized protei	0.699	0.174	0.513	7.2e-16
MGI|MGI:1098264	1749	Kif13a "kinesin family member	0.708	0.041	0.540	8.7e-16
UNIPROTKB|Q9H1H9	1805	KIF13A "Kinesin-like protein K	0.708	0.040	0.540	9e-16
MGI|MGI:1098240	1312	Kif16b "kinesin family member	0.699	0.054	0.527	1.6e-15
UNIPROTKB|Q96L93	1317	KIF16B "Kinesin-like protein K	0.699	0.054	0.527	1.6e-15
ZFIN|ZDB-GENE-090908-5	1097	kif13bb "kinesin family member	0.728	0.068	0.532	1.6e-15
UNIPROTKB|F1PBU4	1754	KIF13A "Uncharacterized protei	0.631	0.037	0.590	1.8e-15

FB|FBgn0019968 Khc-73 "Kinesin-73" [Drosophila melanogaster (taxid:7227)]

 Score = 261 (96.9 bits), Expect = 7.6e-21, P = 7.6e-21
 Identities = 52/84 (61%), Positives = 59/84 (70%)

Query:    16 QVRKQTTYLTGTG---RSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNA 72
             ++ KQ T L       +   K PKTFAFDHCFYSL+P   NFASQE VFD +GR ILDNA
Sbjct:    29 EMEKQQTILQNPPPLEKIERKQPKTFAFDHCFYSLNPEDENFASQETVFDCVGRGILDNA 88

Query:    73 FQGYNACIFAYGQTGEKTNYLLNG 96
             FQGYNACIFAYGQTG   +Y + G
Sbjct:    89 FQGYNACIFAYGQTGSGKSYTMMG 112

GO:0003777 "microtubule motor activity" evidence=ISS;IDA

GO:0008017 "microtubule binding" evidence=ISS

GO:0005871 "kinesin complex" evidence=ISS

GO:0007018 "microtubule-based movement" evidence=ISS

GO:0005524 "ATP binding" evidence=IEA

GO:0000235 "astral microtubule" evidence=IDA

GO:0051294 "establishment of spindle orientation" evidence=IMP

GO:0050803 "regulation of synapse structure and activity" evidence=IMP

GO:0035371 "microtubule plus end" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

UNIPROTKB|H3BNE9 KIF13A "Kinesin-like protein KIF13A" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 8.7e-17, Sum P(2) = 8.7e-17
 Identities = 40/74 (54%), Positives = 51/74 (68%)

Query:    25 TGTGRSHLKPPKTFAFDHCFYSLDP-NLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
             + T +   KPPK FAFD+CF+S+D  N   +A QE VF  LG  IL+ AFQGYNACIFAY
Sbjct:    42 SNTKQGERKPPKVFAFDYCFWSMDESNTTKYAGQEVVFKCLGEGILEKAFQGYNACIFAY 101

Query:    84 GQTGEKTNYLLNGN 97
             GQTG   ++ + G+
Sbjct:   102 GQTGSGKSFSMMGH 115

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

UNIPROTKB|F1RJP9 KIF13B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 215 (80.7 bits), Expect = 5.7e-16, P = 5.7e-16
 Identities = 43/82 (52%), Positives = 53/82 (64%)

Query:    21 TTYLTGTGRSHLKPPKTFAFDHCFYSLDPNL-PNFASQEKVFDALGRDILDNAFQGYNAC 79
             T    G  RS    PK FA+DHCF+S+D ++   +ASQE VF  LG +IL NAF+GYNAC
Sbjct:    28 TNLSKGDARSQ---PKVFAYDHCFWSMDESVREKYASQEDVFKCLGENILQNAFEGYNAC 84

Query:    80 IFAYGQTGEKTNYLLNGNGPFP 101
             IFAYGQTG   +Y + G    P
Sbjct:    85 IFAYGQTGSGKSYTMMGTADQP 106

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|I3LEQ5 I3LEQ5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 204 (76.9 bits), Expect = 7.2e-16, P = 7.2e-16
 Identities = 37/72 (51%), Positives = 49/72 (68%)

Query:    26 GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
             GTG S  +  KTF +D  FYS D   P++ SQE VF  LG D++ +AF+GYNAC+FAYGQ
Sbjct:    17 GTGDSGRERTKTFTYDFSFYSADTKSPDYVSQEMVFKTLGTDVVKSAFEGYNACVFAYGQ 76

Query:    86 TGEKTNYLLNGN 97
             TG   +Y + G+
Sbjct:    77 TGSGKSYTMMGD 88

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

MGI|MGI:1098264 Kif13a "kinesin family member 13A" [Mus musculus (taxid:10090)]

 Score = 213 (80.0 bits), Expect = 8.7e-16, P = 8.7e-16
 Identities = 40/74 (54%), Positives = 51/74 (68%)

Query:    25 TGTGRSHLKPPKTFAFDHCFYSLDP-NLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
             + T +   KPPK FAFD+CF+S+D  N   +A QE VF  LG  IL+ AFQGYNACIFAY
Sbjct:    42 SNTKQGERKPPKVFAFDYCFWSMDESNTTKYAGQEVVFKCLGEGILEKAFQGYNACIFAY 101

Query:    84 GQTGEKTNYLLNGN 97
             GQTG   ++ + G+
Sbjct:   102 GQTGSGKSFSMMGH 115

GO:0000166 "nucleotide binding" evidence=IEA

GO:0000910 "cytokinesis" evidence=ISO

GO:0003777 "microtubule motor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=ISO

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0008333 "endosome to lysosome transport" evidence=ISO

GO:0010008 "endosome membrane" evidence=ISO

GO:0015031 "protein transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030496 "midbody" evidence=ISO

GO:0032438 "melanosome organization" evidence=ISO

GO:0032588 "trans-Golgi network membrane" evidence=IDA

GO:0035459 "cargo loading into vesicle" evidence=ISO

GO:0043001 "Golgi to plasma membrane protein transport" evidence=IDA

GO:0051301 "cell division" evidence=IEA

GO:0072383 "plus-end-directed vesicle transport along microtubule" evidence=IDA

UNIPROTKB|Q9H1H9 KIF13A "Kinesin-like protein KIF13A" [Homo sapiens (taxid:9606)]

 Score = 213 (80.0 bits), Expect = 9.0e-16, P = 9.0e-16
 Identities = 40/74 (54%), Positives = 51/74 (68%)

Query:    25 TGTGRSHLKPPKTFAFDHCFYSLDP-NLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
             + T +   KPPK FAFD+CF+S+D  N   +A QE VF  LG  IL+ AFQGYNACIFAY
Sbjct:    42 SNTKQGERKPPKVFAFDYCFWSMDESNTTKYAGQEVVFKCLGEGILEKAFQGYNACIFAY 101

Query:    84 GQTGEKTNYLLNGN 97
             GQTG   ++ + G+
Sbjct:   102 GQTGSGKSFSMMGH 115

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0010008 "endosome membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0035459 "cargo loading into vesicle" evidence=IMP

GO:0008333 "endosome to lysosome transport" evidence=IMP

GO:0032438 "melanosome organization" evidence=IMP

GO:0005813 "centrosome" evidence=IDA

GO:0000910 "cytokinesis" evidence=IMP

GO:0030496 "midbody" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IMP

GO:0043001 "Golgi to plasma membrane protein transport" evidence=ISS

GO:0072383 "plus-end-directed vesicle transport along microtubule" evidence=ISS

GO:0003777 "microtubule motor activity" evidence=ISS

GO:0032588 "trans-Golgi network membrane" evidence=ISS

MGI|MGI:1098240 Kif16b "kinesin family member 16B" [Mus musculus (taxid:10090)]

 Score = 209 (78.6 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 38/72 (52%), Positives = 49/72 (68%)

Query:    26 GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
             GTG S  +  KTF +D  FYS D   P++ SQE VF  LG D++ +AF+GYNAC+FAYGQ
Sbjct:    44 GTGDSGRERTKTFTYDFSFYSADTKSPDYVSQEMVFKTLGTDVVKSAFEGYNACVFAYGQ 103

Query:    86 TGEKTNYLLNGN 97
             TG   +Y + GN
Sbjct:   104 TGSGKSYTMMGN 115

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001704 "formation of primary germ layer" evidence=IMP

GO:0001919 "regulation of receptor recycling" evidence=ISO

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005768 "endosome" evidence=ISO

GO:0005769 "early endosome" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006895 "Golgi to endosome transport" evidence=IMP

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007154 "cell communication" evidence=IEA

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=ISO

GO:0007492 "endoderm development" evidence=IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008289 "lipid binding" evidence=IEA

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=IMP

GO:0008574 "plus-end-directed microtubule motor activity" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IPI

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=ISO

GO:0032801 "receptor catabolic process" evidence=ISO

GO:0035091 "phosphatidylinositol binding" evidence=IEA

GO:0043325 "phosphatidylinositol-3,4-bisphosphate binding" evidence=ISO

GO:0045022 "early endosome to late endosome transport" evidence=ISO

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=ISO

UNIPROTKB|Q96L93 KIF16B "Kinesin-like protein KIF16B" [Homo sapiens (taxid:9606)]

 Score = 209 (78.6 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 38/72 (52%), Positives = 49/72 (68%)

Query:    26 GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
             GTG S  +  KTF +D  FYS D   P++ SQE VF  LG D++ +AF+GYNAC+FAYGQ
Sbjct:    44 GTGDSGRERTKTFTYDFSFYSADTKSPDYVSQEMVFKTLGTDVVKSAFEGYNACVFAYGQ 103

Query:    86 TGEKTNYLLNGN 97
             TG   +Y + GN
Sbjct:   104 TGSGKSYTMMGN 115

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0017137 "Rab GTPase binding" evidence=IEA

GO:0031901 "early endosome membrane" evidence=IEA

GO:0045022 "early endosome to late endosome transport" evidence=IMP

GO:0032266 "phosphatidylinositol-3-phosphate binding" evidence=IDA

GO:0043325 "phosphatidylinositol-3,4-bisphosphate binding" evidence=IDA

GO:0005547 "phosphatidylinositol-3,4,5-trisphosphate binding" evidence=IDA

GO:0005769 "early endosome" evidence=IDA

GO:0008574 "plus-end-directed microtubule motor activity" evidence=IDA

GO:0001919 "regulation of receptor recycling" evidence=IMP

GO:0032801 "receptor catabolic process" evidence=IMP

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=IMP

GO:0005768 "endosome" evidence=IDA

GO:0080025 "phosphatidylinositol-3,5-bisphosphate binding" evidence=IDA

GO:0001704 "formation of primary germ layer" evidence=ISS

GO:0006895 "Golgi to endosome transport" evidence=ISS

GO:0007492 "endoderm development" evidence=ISS

GO:0008543 "fibroblast growth factor receptor signaling pathway" evidence=ISS

ZFIN|ZDB-GENE-090908-5 kif13bb "kinesin family member 13Bb" [Danio rerio (taxid:7955)]

 Score = 208 (78.3 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 41/77 (53%), Positives = 51/77 (66%)

Query:    26 GTGRSHLKPPKTFAFDHCFYSLDP-NLPNFASQEKVFDALGRDILDNAFQGYNACIFAYG 84
             G G S  KP K FA+D+CF+S+D      FA Q+ VF  LG  +LD+AFQGYNACIFAYG
Sbjct:    51 GKGDSRAKP-KCFAYDYCFWSMDEAETGKFAGQDVVFQCLGESLLDSAFQGYNACIFAYG 109

Query:    85 QTGEKTNYLLNGNGPFP 101
             QTG   +Y + G+   P
Sbjct:   110 QTGSGKSYTMMGSSEQP 126

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1PBU4 KIF13A "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 210 (79.0 bits), Expect = 1.8e-15, P = 1.8e-15
 Identities = 39/66 (59%), Positives = 48/66 (72%)

Query:    33 KPPKTFAFDHCFYSLDP-NLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTN 91
             KPPK FAFD+CF+S+D  N   +A QE VF  LG  IL+ AFQGYNACIFAYGQTG   +
Sbjct:     2 KPPKVFAFDYCFWSMDESNTTKYAGQEVVFKCLGEGILEKAFQGYNACIFAYGQTGSGKS 61

Query:    92 YLLNGN 97
             + + G+
Sbjct:    62 FSMMGS 67

GO:0005874 "microtubule" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0005875 "microtubule associated complex" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9H1H9	KI13A_HUMAN	No assigned EC number	0.5333	0.7184	0.0409	yes	N/A
Q9EQW7	KI13A_MOUSE	No assigned EC number	0.5333	0.7184	0.0423	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	103
cd01365	356	cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, K	1e-29
cd00106	328	cd00106, KISc, Kinesin motor domain	7e-19
pfam00225	326	pfam00225, Kinesin, Kinesin motor domain	9e-19
smart00129	335	smart00129, KISc, Kinesin motor, catalytic domain	1e-17
cd01373	337	cd01373, KISc_KLP2_like, Kinesin motor domain, KLP	1e-15
cd01371	333	cd01371, KISc_KIF3, Kinesin motor domain, kinesins	2e-13
COG5059	568	COG5059, KIP1, Kinesin-like protein [Cytoskeleton]	1e-12
cd01369	325	cd01369, KISc_KHC_KIF5, Kinesin motor domain, kine	6e-12
cd01372	341	cd01372, KISc_KIF4, Kinesin motor domain, KIF4-lik	8e-12
cd01374	321	cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E	5e-11
cd01375	334	cd01375, KISc_KIF9_like, Kinesin motor domain, KIF	5e-11
cd01366	329	cd01366, KISc_C_terminal, Kinesin motor domain, KI	1e-10
cd01364	352	cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC	3e-10
cd01370	338	cd01370, KISc_KIP3_like, Kinesin motor domain, KIP	3e-10
cd01367	322	cd01367, KISc_KIF2_like, Kinesin motor domain, KIF	2e-06
PLN03188	1320	PLN03188, PLN03188, kinesin-12 family protein; Pro	3e-06
cd01376	319	cd01376, KISc_KID_like, Kinesin motor domain, KIF2	5e-05
cd01363	186	cd01363, Motor_domain, Myosin and Kinesin motor do	5e-05

>gnl|CDD|238661 cd01365, KISc_KIF1A_KIF1B, Kinesin motor domain, KIF1_like proteins

 Score =  108 bits (271), Expect = 1e-29
 Identities = 40/94 (42%), Positives = 58/94 (61%), Gaps = 6/94 (6%)

Query: 16  QVRKQTTYLTGTGRSHL--KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAF 73
           Q+  + T L     +    K PK+F+FDH ++S D   P++ASQE VF+ LGR++LD+AF
Sbjct: 26  QMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAF 85

Query: 74  QGYNACIFAYGQTGEKTNYLL----NGNGPFPLI 103
           +GYN C+FAYGQTG   +Y +       G  P +
Sbjct: 86  EGYNVCLFAYGQTGSGKSYTMMGYKEEKGIIPRL 119

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively. Length = 356

>gnl|CDD|238054 cd00106, KISc, Kinesin motor domain

 Score = 78.8 bits (195), Expect = 7e-19
 Identities = 27/68 (39%), Positives = 39/68 (57%), Gaps = 7/68 (10%)

Query: 20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
          +T  LT         PK+F FDH F   DPN    ++QE V++   + ++++  +GYN  
Sbjct: 29 KTVTLTPPKDGRKAGPKSFTFDHVF---DPN----STQEDVYETTAKPLVESVLEGYNGT 81

Query: 80 IFAYGQTG 87
          IFAYGQTG
Sbjct: 82 IFAYGQTG 89

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 328

>gnl|CDD|215803 pfam00225, Kinesin, Kinesin motor domain

 Score = 78.4 bits (194), Expect = 9e-19
 Identities = 28/68 (41%), Positives = 39/68 (57%), Gaps = 9/68 (13%)

Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KTN 91
             KTF FD  F   DP     A+QE V++   + ++++  +GYN  IFAYGQTG  KT 
Sbjct: 37 GREKTFTFDRVF---DPE----ATQEFVYEETAKPLVESVLEGYNVTIFAYGQTGSGKT- 88

Query: 92 YLLNGNGP 99
          Y + G+ P
Sbjct: 89 YTMEGDPP 96

Length = 326

>gnl|CDD|214526 smart00129, KISc, Kinesin motor, catalytic domain

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 25/52 (48%), Positives = 30/52 (57%), Gaps = 7/52 (13%)

Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
          K F FD  F   D      ASQE VF+     ++D+  +GYNA IFAYGQTG
Sbjct: 46 KKFTFDKVF---DAT----ASQEDVFEETAAPLVDSVLEGYNATIFAYGQTG 90

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division. Length = 335

>gnl|CDD|238669 cd01373, KISc_KLP2_like, Kinesin motor domain, KLP2-like subgroup

 Score = 69.8 bits (171), Expect = 1e-15
 Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 7/70 (10%)

Query: 27 TGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQT 86
          T   H  PP+ F FDH     D N     +QE VF ++G+ ++++   GYN  IFAYGQT
Sbjct: 32 TLVWHSHPPRMFTFDHVA---DSNT----NQEDVFQSVGKPLVEDCLSGYNGSIFAYGQT 84

Query: 87 GEKTNYLLNG 96
          G    Y + G
Sbjct: 85 GSGKTYTMMG 94

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 337

>gnl|CDD|238667 cd01371, KISc_KIF3, Kinesin motor domain, kinesins II or KIF3_like proteins

 Score = 63.6 bits (155), Expect = 2e-13
 Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 7/65 (10%)

Query: 33  KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92
           +PPK F FD  +   DPN    ++QE V++   R ++D+  +GYN  IFAYGQTG    +
Sbjct: 45  EPPKVFTFDAVY---DPN----STQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTF 97

Query: 93  LLNGN 97
            + G 
Sbjct: 98  TMEGV 102

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 333

>gnl|CDD|227392 COG5059, KIP1, Kinesin-like protein [Cytoskeleton]

 Score = 62.1 bits (151), Expect = 1e-12
 Identities = 23/57 (40%), Positives = 33/57 (57%), Gaps = 8/57 (14%)

Query: 35  PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG-EKT 90
             T+AFD  F    P+    A+QE V++   + ++D+   GYN  +FAYGQTG  KT
Sbjct: 55  EGTYAFDKVF---GPS----ATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKT 104

Length = 568

>gnl|CDD|238665 cd01369, KISc_KHC_KIF5, Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

 Score = 59.6 bits (145), Expect = 6e-12
 Identities = 24/52 (46%), Positives = 32/52 (61%), Gaps = 7/52 (13%)

Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
          KTF+FD  F       PN  +QE V++ + + I+D+   GYN  IFAYGQTG
Sbjct: 43 KTFSFDRVFP------PN-TTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTG 87

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 325

>gnl|CDD|238668 cd01372, KISc_KIF4, Kinesin motor domain, KIF4-like subfamily

 Score = 59.2 bits (144), Expect = 8e-12
 Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 8/74 (10%)

Query: 18 RKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYN 77
          +   + + G  +  +   K+F FD+ F   DP+     SQE+V++     ++D  F+GYN
Sbjct: 22 QVCVSVVPGEPQVTVGTDKSFTFDYVF---DPS----TSQEEVYNTCVAPLVDGLFEGYN 74

Query: 78 ACIFAYGQTGE-KT 90
          A + AYGQTG  KT
Sbjct: 75 ATVLAYGQTGSGKT 88

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 341

>gnl|CDD|238670 cd01374, KISc_CENP_E, Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

 Score = 56.9 bits (138), Expect = 5e-11
 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 7/76 (9%)

Query: 28  GRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
                 P ++F FD  F        N     +V++ + + ++ +A +GYN  IFAYGQT 
Sbjct: 32  SLEESTPGQSFTFDRVF---GGESTN----REVYERIAKPVVRSALEGYNGTIFAYGQTS 84

Query: 88  EKTNYLLNGNGPFPLI 103
               + ++G+   P I
Sbjct: 85  SGKTFTMSGDEQEPGI 100

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 321

>gnl|CDD|238671 cd01375, KISc_KIF9_like, Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

 Score = 57.1 bits (138), Expect = 5e-11
 Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 8/62 (12%)

Query: 37  TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96
           +F FD  F++        ASQE+V++ + + ++D+A  GYN  IFAYGQTG    + + G
Sbjct: 49  SFKFDGVFHN--------ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTG 100

Query: 97  NG 98
             
Sbjct: 101 GT 102

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 334

>gnl|CDD|238662 cd01366, KISc_C_terminal, Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

 Score = 55.7 bits (135), Expect = 1e-10
 Identities = 28/57 (49%), Positives = 36/57 (63%), Gaps = 9/57 (15%)

Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
           K+F+FD  F   DP+    ASQE VF+ +   ++ +A  GYN CIFAYGQTG  KT
Sbjct: 44 KKSFSFDRVF---DPD----ASQEDVFEEVSP-LVQSALDGYNVCIFAYGQTGSGKT 92

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 329

>gnl|CDD|238660 cd01364, KISc_BimC_Eg5, Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 28/85 (32%), Positives = 35/85 (41%), Gaps = 9/85 (10%)

Query: 13  TAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNA 72
                 K+    TG         KT+ FD  F    P     A Q +V+  +   ILD  
Sbjct: 27  EVSGSSKEIIVSTGGADKQST--KTYTFDKVF---GP----EADQIEVYSQVVSPILDEV 77

Query: 73  FQGYNACIFAYGQTGEKTNYLLNGN 97
             GYN  IFAYGQTG    Y + G+
Sbjct: 78  LMGYNCTIFAYGQTGTGKTYTMEGD 102

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 352

>gnl|CDD|238666 cd01370, KISc_KIP3_like, Kinesin motor domain, KIP3-like subgroup

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 7/53 (13%)

Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
             ++FD  F   D      ++QE+V++   + ++D    GYNA +FAYG TG
Sbjct: 53 ELKYSFDRVF---DET----STQEEVYENTTKPLVDGVLNGYNATVFAYGATG 98

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 338

>gnl|CDD|238663 cd01367, KISc_KIF2_like, Kinesin motor domain, KIF2-like group

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 28/100 (28%), Positives = 40/100 (40%), Gaps = 18/100 (18%)

Query: 2   PSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVF 61
            S  T  V+ P      K    LT     H     TF FD+ F     N       E+V+
Sbjct: 28  ESNPTVTVHEP------KTKVDLTKYIEKH-----TFRFDYVFDEAVTN-------EEVY 69

Query: 62  DALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP 101
            +  + ++ + F+G  A  FAYGQTG    Y + G+    
Sbjct: 70  RSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQE 109

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 322

>gnl|CDD|215621 PLN03188, PLN03188, kinesin-12 family protein; Provisional

 Score = 43.4 bits (102), Expect = 3e-06
 Identities = 22/61 (36%), Positives = 34/61 (55%), Gaps = 7/61 (11%)

Query: 36  KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
           +TF FD      DP     ++QE +F  +G  +++N   G+N+ +FAYGQTG    Y + 
Sbjct: 132 QTFTFDSI---ADPE----STQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMW 184

Query: 96  G 96
           G
Sbjct: 185 G 185

Length = 1320

>gnl|CDD|238672 cd01376, KISc_KID_like, Kinesin motor domain, KIF22/Kid-like subgroup

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 55  ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN 97
            +QE +F    + I+ +   G NA +FAYG TG    + + G+
Sbjct: 59  CTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGD 101

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80 Angstroms along the microtubule. Meanwhile, ATP hydrolysis takes place, and when the second head domain binds to the microtubule, the first domain again replaces ADP with ATP, triggering a conformational change that pulls the first domain forward. Length = 319

>gnl|CDD|238659 cd01363, Motor_domain, Myosin and Kinesin motor domain

 Score = 39.4 bits (92), Expect = 5e-05
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 68 ILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99
          +L +A  GYN CIFAYGQTG    Y + G   
Sbjct: 15 LLQSALDGYNVCIFAYGQTGSGKTYTMEGKRE 46

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes. Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	103
KOG0245|consensus	1221		99.96
cd01365	356	KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like p	99.93
cd01368	345	KISc_KIF23_like Kinesin motor domain, KIF23-like s	99.93
cd01370	338	KISc_KIP3_like Kinesin motor domain, KIP3-like sub	99.93
KOG4280|consensus	574		99.92
KOG0241|consensus	1714		99.92
cd01367	322	KISc_KIF2_like Kinesin motor domain, KIF2-like gro	99.92
cd01373	337	KISc_KLP2_like Kinesin motor domain, KLP2-like sub	99.92
KOG0243|consensus	1041		99.91
KOG0239|consensus	670		99.91
cd01376	319	KISc_KID_like Kinesin motor domain, KIF22/Kid-like	99.91
KOG0242|consensus	675		99.9
cd01371	333	KISc_KIF3 Kinesin motor domain, kinesins II or KIF	99.9
cd01374	321	KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like	99.9
PLN03188	1320	kinesin-12 family protein; Provisional	99.9
cd01369	325	KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy	99.89
cd00106	328	KISc Kinesin motor domain. This catalytic (head) d	99.89
cd01372	341	KISc_KIF4 Kinesin motor domain, KIF4-like subfamil	99.89
cd01364	352	KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spind	99.89
cd01375	334	KISc_KIF9_like Kinesin motor domain, KIF9-like sub	99.89
PF00225	335	Kinesin: Kinesin motor domain; InterPro: IPR001752	99.87
cd01366	329	KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/	99.87
KOG0240|consensus	607		99.85
smart00129	335	KISc Kinesin motor, catalytic domain. ATPase. Micr	99.85
COG5059	568	KIP1 Kinesin-like protein [Cytoskeleton]	99.8
KOG0246|consensus	676		99.79
KOG0247|consensus	809		99.73
cd01363	186	Motor_domain Myosin and Kinesin motor domain. Thes	99.67
KOG0244|consensus	913		99.64
PF00308	219	Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013	96.43
PRK14086	617	dnaA chromosomal replication initiation protein; P	95.96
COG0556	663	UvrB Helicase subunit of the DNA excision repair c	95.92
COG2805	353	PilT Tfp pilus assembly protein, pilus retraction	95.9
PRK06620	214	hypothetical protein; Validated	95.43
PRK09087	226	hypothetical protein; Validated	95.37
COG2804	500	PulE Type II secretory pathway, ATPase PulE/Tfp pi	95.02
PRK06893	229	DNA replication initiation factor; Validated	94.83
PF04851	184	ResIII: Type III restriction enzyme, res subunit;	94.76
cd00009	151	AAA The AAA+ (ATPases Associated with a wide varie	94.54
TIGR02928	365	orc1/cdc6 family replication initiation protein. M	94.42
PRK00411	394	cdc6 cell division control protein 6; Reviewed	94.41
PRK14088	440	dnaA chromosomal replication initiation protein; P	94.27
PRK00149	450	dnaA chromosomal replication initiation protein; R	93.85
PRK08084	235	DNA replication initiation factor; Provisional	93.81
PF01935	229	DUF87: Domain of unknown function DUF87; InterPro:	93.79
COG1484	254	DnaC DNA replication protein [DNA replication, rec	93.74
TIGR00362	405	DnaA chromosomal replication initiator protein Dna	93.69
COG1474	366	CDC6 Cdc6-related protein, AAA superfamily ATPase	93.64
PRK10436	462	hypothetical protein; Provisional	93.51
TIGR02533	486	type_II_gspE general secretory pathway protein E.	93.48
TIGR02538	564	type_IV_pilB type IV-A pilus assembly ATPase PilB.	93.34
PRK06526	254	transposase; Provisional	93.31
COG0593	408	DnaA ATPase involved in DNA replication initiation	93.25
TIGR01420	343	pilT_fam pilus retraction protein PilT. This model	92.98
PRK08116	268	hypothetical protein; Validated	92.96
PRK05642	234	DNA replication initiation factor; Validated	92.95
TIGR02525	372	plasmid_TraJ plasmid transfer ATPase TraJ. Members	92.73
cd01129	264	PulE-GspE PulE/GspE The type II secretory pathway	92.56
PF00437	270	T2SE: Type II/IV secretion system protein; InterPr	92.49
TIGR03420	226	DnaA_homol_Hda DnaA regulatory inactivator Hda. Me	92.34
PRK12377	248	putative replication protein; Provisional	92.27
PRK08727	233	hypothetical protein; Validated	92.2
TIGR02524	358	dot_icm_DotB Dot/Icm secretion system ATPase DotB.	92.14
PRK08181	269	transposase; Validated	92.1
PF00270	169	DEAD: DEAD/DEAH box helicase; InterPro: IPR011545	91.96
PRK14087	450	dnaA chromosomal replication initiation protein; P	91.85
PRK07952	244	DNA replication protein DnaC; Validated	91.69
PRK06835	329	DNA replication protein DnaC; Validated	91.38
PRK13894	319	conjugal transfer ATPase TrbB; Provisional	91.22
PF01695	178	IstB_IS21: IstB-like ATP binding protein; InterPro	90.96
TIGR02782	299	TrbB_P P-type conjugative transfer ATPase TrbB. Th	90.79
PRK09183	259	transposase/IS protein; Provisional	90.4
PRK08939	306	primosomal protein DnaI; Reviewed	90.3
PRK12402	337	replication factor C small subunit 2; Reviewed	90.1
PRK08903	227	DnaA regulatory inactivator Hda; Validated	89.94
PTZ00112	1164	origin recognition complex 1 protein; Provisional	89.93
PF01637	234	Arch_ATPase: Archaeal ATPase; InterPro: IPR011579	89.87
PRK13833	323	conjugal transfer protein TrbB; Provisional	89.78
PF00063	689	Myosin_head: Myosin head (motor domain); InterPro:	89.62
PF13245	76	AAA_19: Part of AAA domain	89.53
PF01580	205	FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR00	89.42
COG5008	375	PilU Tfp pilus assembly protein, ATPase PilU [Cell	89.21
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	89.03
smart00242	677	MYSc Myosin. Large ATPases. ATPase; molecular moto	88.93
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	88.82
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	88.81
PF05970	364	PIF1: PIF1-like helicase; InterPro: IPR010285 This	88.69
smart00487	201	DEXDc DEAD-like helicases superfamily.	88.55
TIGR03015	269	pepcterm_ATPase putative secretion ATPase, PEP-CTE	88.55
PF06048	286	DUF927: Domain of unknown function (DUF927); Inter	88.35
PRK12422	445	chromosomal replication initiation protein; Provis	88.0
PF07693	325	KAP_NTPase: KAP family P-loop domain; InterPro: IP	87.99
PF13191	185	AAA_16: AAA ATPase domain; PDB: 2V1U_A.	87.86
cd01383	677	MYSc_type_VIII Myosin motor domain, plant-specific	87.83
cd01377	693	MYSc_type_II Myosin motor domain, type II myosins.	87.82
PHA00729	226	NTP-binding motif containing protein	87.78
cd01384	674	MYSc_type_XI Myosin motor domain, plant-specific t	87.73
PF13604	196	AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL	87.67
PRK11776	460	ATP-dependent RNA helicase DbpA; Provisional	87.41
cd00124	679	MYSc Myosin motor domain. This catalytic (head) do	87.37
cd01385	692	MYSc_type_IX Myosin motor domain, type IX myosins.	87.34
PRK06921	266	hypothetical protein; Provisional	87.32
cd01381	671	MYSc_type_VII Myosin motor domain, type VII myosin	87.2
PRK13851	344	type IV secretion system protein VirB11; Provision	87.18
cd01378	674	MYSc_type_I Myosin motor domain, type I myosins. M	87.04
cd01382	717	MYSc_type_VI Myosin motor domain, type VI myosins.	86.87
PRK13900	332	type IV secretion system ATPase VirB11; Provisiona	86.82
PHA02244	383	ATPase-like protein	86.78
cd01380	691	MYSc_type_V Myosin motor domain, type V myosins. M	86.75
) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309	127	Torsin: Torsin; InterPro: IPR010448 This family co	86.49
PRK06547	172	hypothetical protein; Provisional	86.35
cd01387	677	MYSc_type_XV Myosin motor domain, type XV myosins.	86.24
COG4096	875	HsdR Type I site-specific restriction-modification	86.19
PTZ00424	401	helicase 45; Provisional	86.07
TIGR00348	667	hsdR type I site-specific deoxyribonuclease, HsdR	85.58
TIGR03499	282	FlhF flagellar biosynthetic protein FlhF.	85.53
PHA02653	675	RNA helicase NPH-II; Provisional	85.34
PRK13764	602	ATPase; Provisional	85.23
PF02562	205	PhoH: PhoH-like protein; InterPro: IPR003714 PhoH	84.95
PF00580	315	UvrD-helicase: UvrD/REP helicase N-terminal domain	84.8
PRK10590	456	ATP-dependent RNA helicase RhlE; Provisional	84.69
PRK11192	434	ATP-dependent RNA helicase SrmB; Provisional	84.57
PRK11448	1123	hsdR type I restriction enzyme EcoKI subunit R; Pr	84.53
cd00268	203	DEADc DEAD-box helicases. A diverse family of prot	84.52
PF06414	199	Zeta_toxin: Zeta toxin; InterPro: IPR010488 This e	84.49
PRK04837	423	ATP-dependent RNA helicase RhlB; Provisional	84.2
KOG0989|consensus	346		84.09
PRK00440	319	rfc replication factor C small subunit; Reviewed	83.59
COG4962	355	CpaF Flp pilus assembly protein, ATPase CpaF [Intr	83.45
PRK04328	249	hypothetical protein; Provisional	83.21
PF13086	236	AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV	82.99
cd01386	767	MYSc_type_XVIII Myosin motor domain, type XVIII my	82.94
TIGR02640	262	gas_vesic_GvpN gas vesicle protein GvpN. Members o	82.83
COG1201	814	Lhr Lhr-like helicases [General function predictio	82.46
PRK01297	475	ATP-dependent RNA helicase RhlB; Provisional	82.39
PRK11634	629	ATP-dependent RNA helicase DeaD; Provisional	82.35
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	82.19
PRK10536	262	hypothetical protein; Provisional	82.07
TIGR02237	209	recomb_radB DNA repair and recombination protein R	82.01
cd01123	235	Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r	81.96
PF10923	416	DUF2791: P-loop Domain of unknown function (DUF279	81.73
TIGR00635	305	ruvB Holliday junction DNA helicase, RuvB subunit.	81.34
PRK11331	459	5-methylcytosine-specific restriction enzyme subun	81.24
PLN03025	319	replication factor C subunit; Provisional	81.22
TIGR02881	261	spore_V_K stage V sporulation protein K. Members o	81.07
cd01379	653	MYSc_type_III Myosin motor domain, type III myosin	81.03
COG1223	368	Predicted ATPase (AAA+ superfamily) [General funct	81.0
KOG0335|consensus	482		80.84
KOG2543|consensus	438		80.57
PRK09270	229	nucleoside triphosphate hydrolase domain-containin	80.02

>KOG0245|consensus

Probab=99.96  E-value=5.8e-30  Score=208.46  Aligned_cols=87  Identities=43%  Similarity=0.741  Sum_probs=76.0

Q ss_pred             ccccCCEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         15 KQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .++.++.+.+.+|.....  ...|+||++|||||.+.|.+++|..||++++.++|+++|+|||+||||||||||||+|||
T Consensus        28 vqm~gn~ttii~~~~~k~--~~~FtfD~SYWS~d~edPhfAsQ~qVYedlg~~mL~~AfEGYN~ClFAYGQTGSGKSYTM  105 (1221)
T KOG0245|consen   28 VQMQGNTTTIINPKGSKD--APKFTFDYSYWSHDSEDPHFASQKQVYEDLGREMLDHAFEGYNVCLFAYGQTGSGKSYTM  105 (1221)
T ss_pred             EEecCCceeeecCCCccc--CCceecceeeecCCCCCCchhhHHHHHHHHhHHHHHHHhcccceEEEEeccCCCCcceee
Confidence            556666666655544222  344999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCC--CCCCC
Q psy12526         95 NGNG--PFPLI  103 (103)
Q Consensus        95 ~G~~--~~pGi  103 (103)
                      ||..  ++|||
T Consensus       106 MG~~~~~e~GI  116 (1221)
T KOG0245|consen  106 MGFQEPDEPGI  116 (1221)
T ss_pred             eccCCCCCCCc
Confidence            9998  89997

>cd01365 KISc_KIF1A_KIF1B Kinesin motor domain, KIF1_like proteins

Probab=99.93  E-value=1.9e-25  Score=168.27  Aligned_cols=88  Identities=45%  Similarity=0.806  Sum_probs=73.1

Q ss_pred             cccCCEEEEecCCCCC--CCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         16 QVRKQTTYLTGTGRSH--LKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        16 ~~~~~~~~~~~~~~~~--~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      ...++.+.+..+....  ....+.|.||+|||+.++..+..++|++||+.++.|+|+++++|+|+|||||||||||||||
T Consensus        26 ~~~~~~v~v~~~~~~~~~~~~~~~f~FD~vf~~~~~~~~~~~tq~~vf~~~~~p~v~~~l~G~n~~i~ayGqtGSGKT~T  105 (356)
T cd01365          26 QMPGKVTTLKNPKAADATRKKPKSFSFDHSYWSHDSEDPHYASQEDVFEDLGRELLDHAFEGYNVCLFAYGQTGSGKSYT  105 (356)
T ss_pred             EECCCEEEEEcCCcccccccCceEEECCeEecccCCCCCCCCCHHHHHHHHHHHHHHHHhCCCceEEEEecCCCCCCeEE
Confidence            3344555665554311  23468999999999776666667999999999999999999999999999999999999999


Q ss_pred             eccCCCCCCC
Q psy12526         94 LNGNGPFPLI  103 (103)
Q Consensus        94 m~G~~~~pGi  103 (103)
                      |+|+..++||
T Consensus       106 m~G~~~~~Gl  115 (356)
T cd01365         106 MMGYKEEKGI  115 (356)
T ss_pred             ecCCCCCCch
Confidence            9999999997

KIF1A (Unc104) transports synaptic vesicles to the nerve terminal, KIF1B has been implicated in transport of mitochondria. Both proteins are expressed in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. In contrast to the majority of dimeric kinesins, most KIF1A/Unc104 kinesins are monomeric motors. A lysine-rich loop in KIF1A binds to the negatively charged C-terminus of tubulin and compensates for the lack of a second motor domain, allowing KIF1A to move processively.

>cd01368 KISc_KIF23_like Kinesin motor domain, KIF23-like subgroup

Probab=99.93  E-value=2.2e-25  Score=167.58  Aligned_cols=63  Identities=22%  Similarity=0.423  Sum_probs=60.9

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      .++.|.||+||+       +.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+.+++||
T Consensus        53 ~~~~f~Fd~vf~-------~~~tq~~vy~~~~~p~v~~~l~G~n~ti~aYGqtGSGKTyTm~G~~~~~Gl  115 (345)
T cd01368          53 KETKFSFSKVFG-------PNTTQKEFFEGTALPLVQDLLKGKNSLLFTYGVTNSGKTYTMQGSPGDGGI  115 (345)
T ss_pred             CceEeecCeEEC-------CCCCHHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCCeEEecCCCCCCch
Confidence            578999999999       899999999999999999999999999999999999999999999999997

Members of this group may play a role in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, a

>cd01370 KISc_KIP3_like Kinesin motor domain, KIP3-like subgroup

Probab=99.93  E-value=1.6e-25  Score=167.95  Aligned_cols=63  Identities=30%  Similarity=0.594  Sum_probs=60.8

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      .++.|.||+||+       +.++|++||+.+++|+|+++++|||+||||||||||||||||+|+.++|||
T Consensus        52 ~~~~f~Fd~vf~-------~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Gi  114 (338)
T cd01370          52 KELKYSFDRVFD-------ETSTQEEVYENTTKPLVDGVLNGYNATVFAYGATGAGKTHTMLGTDSDPGL  114 (338)
T ss_pred             CceEEEeccccC-------CCCCHHHHHHHHHHHHHHHHHCCCCceEEeeCCCCCCCeEEEcCCCCCCch
Confidence            468999999999       899999999999999999999999999999999999999999999999997

The yeast kinesin KIP3 plays a role in positioning the mitotic spindle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a sec

>KOG4280|consensus

Probab=99.92  E-value=1.2e-25  Score=176.93  Aligned_cols=78  Identities=27%  Similarity=0.486  Sum_probs=68.6

Q ss_pred             CCEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC-
Q psy12526         19 KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN-   97 (103)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~-   97 (103)
                      ..++.+.++.......++.|+||.||+       +.++|++||+.++.|+|+++++|||+||||||||||||||||+|+ 
T Consensus        35 ~~~~~l~~~~~~~~~~~~~ftfD~vf~-------~~stQ~dvy~~~~~~lV~svl~GyNgtvFaYGQTGsGKTyTM~G~~  107 (574)
T KOG4280|consen   35 HGRVSLKNPVAGIEGKPKSFTFDAVFD-------SDSTQDDVYQETVAPLVESVLEGYNGTVFAYGQTGSGKTYTMIGPD  107 (574)
T ss_pred             cceeeecCCcccccCCCCCceeeeeec-------CCCCHHHHHHHHhHHHHHHHhcccCceEEEeccCCCCCceEeeCCC
Confidence            355666666666667889999999998       899999999999999999999999999999999999999999999 


Q ss_pred             CCCCCC
Q psy12526         98 GPFPLI  103 (103)
Q Consensus        98 ~~~pGi  103 (103)
                      .+.-||
T Consensus       108 ~~~~Gi  113 (574)
T KOG4280|consen  108 PELRGL  113 (574)
T ss_pred             hhhCCc
Confidence            445554

>KOG0241|consensus

Probab=99.92  E-value=1e-25  Score=183.22  Aligned_cols=89  Identities=55%  Similarity=0.915  Sum_probs=78.7

Q ss_pred             ccccCCEEEEecCCCC----CCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCC
Q psy12526         15 KQVRKQTTYLTGTGRS----HLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKT   90 (103)
Q Consensus        15 ~~~~~~~~~~~~~~~~----~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGK   90 (103)
                      .+++.++++++.|...    ..+.+|+|+||+||||.++..-..++|+.||+.++..+|+.+|+|||+||||||||||||
T Consensus        28 v~vd~~q~vl~~~pp~~~~~~~k~pktFAFDhcF~s~dpes~n~agQE~Vf~~lG~~il~naf~GyNaCifaYGQtGsGK  107 (1714)
T KOG0241|consen   28 VEVDKNQTVLHPPPPNHKIGESKGPKTFAFDHCFWSMDPESKNYAGQETVFKCLGEGILENAFQGYNACIFAYGQTGSGK  107 (1714)
T ss_pred             EEeccCceeecCCCccccccccCCCceeecccccccCCccccccccchhHHHhcchHHHHHHhhccceeeEEecccCCCc
Confidence            4566778888776443    224689999999999999777789999999999999999999999999999999999999


Q ss_pred             ceEeccCCCCCCC
Q psy12526         91 NYLLNGNGPFPLI  103 (103)
Q Consensus        91 T~Tm~G~~~~pGi  103 (103)
                      ||||||..++|||
T Consensus       108 sYsmmGt~~QpGi  120 (1714)
T KOG0241|consen  108 SYSMMGTAEQPGI  120 (1714)
T ss_pred             eeEeeccCCCCCc
Confidence            9999999999997

>cd01367 KISc_KIF2_like Kinesin motor domain, KIF2-like group

Probab=99.92  E-value=3.8e-25  Score=164.86  Aligned_cols=62  Identities=31%  Similarity=0.512  Sum_probs=60.2

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      .+.|.||+||+       +.++|++||+.+++|+|+.+++|+|+||||||||||||||||+|+.+++||
T Consensus        50 ~~~f~FD~vf~-------~~~~q~~vf~~~~~plv~~~~~G~n~~i~ayGqtGSGKTyTm~G~~~~~Gl  111 (322)
T cd01367          50 KHTFRFDYVFD-------EAVTNEEVYRSTVKPLIPHVFEGGVATCFAYGQTGSGKTYTMLGDENQEGL  111 (322)
T ss_pred             CceEecceEEC-------CCCCHHHHHHHHHHHHHHHHhCCCceEEEeccCCCCCCceEecCcCCcCcc
Confidence            58999999999       899999999999999999999999999999999999999999999999997

KIF2 is a protein expressed in neurons, which has been associated with axonal transport and neuron development; alternative splice forms have been implicated in lysosomal translocation. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found in the middle (M-type) of the protein chain. M-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second (KIF2 may be slower). To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and lo

>cd01373 KISc_KLP2_like Kinesin motor domain, KLP2-like subgroup

Probab=99.92  E-value=1.3e-24  Score=162.96  Aligned_cols=59  Identities=41%  Similarity=0.849  Sum_probs=56.1

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP   99 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~   99 (103)
                      +.+.|.||+|||       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+..
T Consensus        39 ~~~~f~FD~vf~-------~~~~q~~vy~~~~~p~v~~~~~G~n~ti~aYGqTGSGKTyTm~G~~~   97 (337)
T cd01373          39 PPRMFTFDHVAD-------SNTNQEDVFQSVGKPLVEDCLSGYNGSIFAYGQTGSGKTYTMMGPSS   97 (337)
T ss_pred             CCcEEeCCeEeC-------CCCCHHHHHHHHHHHHHHHHhCCCceeEEEeCCCCCCceEEecCCCC
Confidence            368999999999       89999999999999999999999999999999999999999999764

Members of this subgroup seem to play a role in mitosis and meiosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second

>KOG0243|consensus

Probab=99.91  E-value=9.3e-25  Score=179.16  Aligned_cols=62  Identities=39%  Similarity=0.619  Sum_probs=58.3

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEecc--------CCCCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG--------NGPFPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G--------~~~~pGi  103 (103)
                      .|.|+||+||+       |.+.|++||+.++.|+|..++.|||||||||||||+||||||.|        .++.+||
T Consensus        94 ~k~ftFDkVFG-------pes~Q~d~Y~~~v~p~i~eVl~GyNCTIFAYGQTGTGKTyTMeG~~~~~~g~l~~~aGI  163 (1041)
T KOG0243|consen   94 DKTFTFDKVFG-------PESQQEDLYDQAVSPIIKEVLEGYNCTIFAYGQTGTGKTYTMEGGERKKNGELPSEAGI  163 (1041)
T ss_pred             cceeecceeeC-------cchhHHHHHHHHHHHHHHHHhccCCceEEEecCCCCCceeeeecCcccccCCCCccCCc
Confidence            68999999999       89999999999999999999999999999999999999999999        5666775

>KOG0239|consensus

Probab=99.91  E-value=1.3e-24  Score=174.45  Aligned_cols=73  Identities=37%  Similarity=0.714  Sum_probs=62.0

Q ss_pred             EEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEecc-CCCCC
Q psy12526         23 YLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG-NGPFP  101 (103)
Q Consensus        23 ~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G-~~~~p  101 (103)
                      .+..|........+.|.||+||.       |.++|++||.++ .|+|.++++|||+||||||||||||||||.| +.+++
T Consensus       347 ~~~~~~~~~~~~~~~f~fdkVf~-------p~~sQ~~VF~e~-~~lv~S~lDGYnVCIFAYGQTGSGKTyTM~G~~~~~~  418 (670)
T KOG0239|consen  347 QVDSPDKGDKLEPQSFKFDKVFG-------PLASQDDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMSGPTPEDP  418 (670)
T ss_pred             EeecCCCCCCCccccceeeeecC-------CcccHHHHHHHH-HHHHHHHhcCcceeEEEecccCCCccccccCCCcccC
Confidence            33334333333345699999998       999999999997 6999999999999999999999999999999 79999


Q ss_pred             CC
Q psy12526        102 LI  103 (103)
Q Consensus       102 Gi  103 (103)
                      ||
T Consensus       419 Gi  420 (670)
T KOG0239|consen  419 GI  420 (670)
T ss_pred             Cc
Confidence            97

>cd01376 KISc_KID_like Kinesin motor domain, KIF22/Kid-like subgroup

Probab=99.91  E-value=4.5e-24  Score=158.85  Aligned_cols=63  Identities=29%  Similarity=0.470  Sum_probs=60.6

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      .++.|.||+||+       +.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+..++||
T Consensus        45 ~~~~f~FD~vf~-------~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~Gl  107 (319)
T cd01376          45 ETKKYQFDAFYG-------TECTQEDIFSREVKPIVPHLLSGQNATVFAYGSTGAGKTHTMLGDPNEPGL  107 (319)
T ss_pred             CccEEecCeEEC-------CCCCHHHHHHHHHHHHHHHHhCCCceEEEEECCCCCCCcEEEeCCcCccch
Confidence            468999999999       889999999999999999999999999999999999999999999999997

Members of this group might play a role in regulating chromosomal movement along microtubules in mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through

>KOG0242|consensus

Probab=99.90  E-value=2.4e-24  Score=173.21  Aligned_cols=62  Identities=35%  Similarity=0.689  Sum_probs=60.3

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      +..|.||+||+       +.++|++||+..++|+|+++++|||+||||||||||||||||+|..++|||
T Consensus        52 ~~~y~FD~VF~-------~~~t~~~VYe~~tkpiv~~~l~G~N~TVFAYG~TgSGKTyTM~G~~~~PGi  113 (675)
T KOG0242|consen   52 PEKYEFDRVFG-------EESTQEDVYERTTKPLLLSVLEGFNATVFAYGQTGSGKTYTMSGSEDDPGI  113 (675)
T ss_pred             ccceeeeeecC-------CCCCHHHHHHhccHHHHHHHhcCcccceeeecCCCCCCceEEeccCCCCCe
Confidence            58999999999       889999999999999999999999999999999999999999999999997

>cd01371 KISc_KIF3 Kinesin motor domain, kinesins II or KIF3_like proteins

Probab=99.90  E-value=8.6e-24  Score=158.14  Aligned_cols=78  Identities=31%  Similarity=0.598  Sum_probs=67.3

Q ss_pred             CCEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC
Q psy12526         19 KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG   98 (103)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~   98 (103)
                      ..++.+..+.......++.|.||+||+       +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+.
T Consensus        31 ~~~v~~~~~~~~~~~~~~~f~fd~vf~-------~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTm~G~~  103 (333)
T cd01371          31 RGQVTVHNPKADAKEPPKVFTFDAVYD-------PNSTQEDVYNETARPLVDSVLEGYNGTIFAYGQTGTGKTFTMEGVR  103 (333)
T ss_pred             CCEEEEeCCcccccCCCceeeeccccC-------CCccHHHHHHHHHHHHHHHHhCCCceeEEecCCCCCCCcEeecCCC
Confidence            344555555443344678999999999       8899999999999999999999999999999999999999999998


Q ss_pred             C---CCCC
Q psy12526         99 P---FPLI  103 (103)
Q Consensus        99 ~---~pGi  103 (103)
                      .   ++||
T Consensus       104 ~~~~~~Gl  111 (333)
T cd01371         104 EPPELRGI  111 (333)
T ss_pred             Ccccccch
Confidence            7   8886

Subgroup of kinesins, which form heterotrimers composed of 2 kinesins and one non-motor accessory subunit. Kinesins II play important roles in ciliary transport, and have been implicated in neuronal transport, melanosome transport, the secretory pathway, and mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this group the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain

>cd01374 KISc_CENP_E Kinesin motor domain, CENP-E/KIP2-like subgroup, involved in chromosome movement and/or spindle elongation during mitosis

Probab=99.90  E-value=1e-23  Score=156.90  Aligned_cols=63  Identities=32%  Similarity=0.692  Sum_probs=60.8

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+..++||
T Consensus        38 ~~~~f~fd~vf~-------~~~~q~~vy~~~~~p~v~~~l~G~n~~i~ayG~tgSGKT~T~~G~~~~~Gl  100 (321)
T cd01374          38 PGQSFTFDRVFG-------GESTNREVYERIAKPVVRSALEGYNGTIFAYGQTSSGKTFTMSGDEQEPGI  100 (321)
T ss_pred             CCeEEecCeEEC-------CCCCHHHHHHHHHHHHHHHHHCCCceeEEeecCCCCCCceeccCCCCCCch
Confidence            469999999999       889999999999999999999999999999999999999999999999996

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to

>PLN03188 kinesin-12 family protein; Provisional

Probab=99.90  E-value=7.4e-24  Score=175.98  Aligned_cols=58  Identities=34%  Similarity=0.669  Sum_probs=55.2

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG   98 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~   98 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+.
T Consensus       130 ~~qtFtFD~VFd-------p~aTQedVFe~vv~PLV~svLdGyNaTIFAYGQTGSGKTYTM~G~~  187 (1320)
T PLN03188        130 NGQTFTFDSIAD-------PESTQEDIFQLVGAPLVENCLAGFNSSVFAYGQTGSGKTYTMWGPA  187 (1320)
T ss_pred             eCcEEeCCeeeC-------CCCCHHHHHHHHHHHHHHHHhcCCcceeecCCCCCCCCCEeeCCCC
Confidence            458999999999       8999999999999999999999999999999999999999999963

>cd01369 KISc_KHC_KIF5 Kinesin motor domain, kinesin heavy chain (KHC) or KIF5-like subgroup

Probab=99.89  E-value=3.5e-23  Score=154.19  Aligned_cols=63  Identities=40%  Similarity=0.699  Sum_probs=59.9

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC---CCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP---FPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~---~pGi  103 (103)
                      ..+.|.||+|||       +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+..   ++||
T Consensus        41 ~~~~f~FD~vf~-------~~~~q~~vy~~~~~~~v~~~~~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~~Gi  106 (325)
T cd01369          41 DGKTFSFDRVFP-------PNTTQEDVYNFVAKPIVDDVLNGYNGTIFAYGQTGSGKTYTMEGPPGDPELKGI  106 (325)
T ss_pred             CceEEEcCeEEC-------CCCCHHHHHHHHHHHHHHHHHcCccceEEEeCCCCCCceEEecCCCCccccCCh
Confidence            468999999999       89999999999999999999999999999999999999999999988   7786

Members of this group have been associated with organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-c

>cd00106 KISc Kinesin motor domain

Probab=99.89  E-value=6.5e-23  Score=152.36  Aligned_cols=77  Identities=36%  Similarity=0.635  Sum_probs=68.4

Q ss_pred             CEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526         20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP   99 (103)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~   99 (103)
                      +++++..+........+.|.||+||+       +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+.+
T Consensus        29 ~~v~~~~~~~~~~~~~~~f~fd~vf~-------~~~~q~~v~~~~~~~~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~  101 (328)
T cd00106          29 KTVTLTPPKDGRKAGPKSFTFDHVFD-------PNSTQEDVYETTAKPLVESVLEGYNGTIFAYGQTGSGKTYTMFGSPK  101 (328)
T ss_pred             CEEEEecCccccCcCceEEECCeEEc-------CCCCHHHHHHHHHHHHHHHHhCCCceeEEEecCCCCCCeEEecCCCC
Confidence            56666655543444579999999999       88999999999999999999999999999999999999999999999


Q ss_pred             CCCC
Q psy12526        100 FPLI  103 (103)
Q Consensus       100 ~pGi  103 (103)
                      ++||
T Consensus       102 ~~Gl  105 (328)
T cd00106         102 DPGI  105 (328)
T ss_pred             CCch
Confidence            9997

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), in some its is found in the middle (M-type), or C-terminal (C-type). N-type and M-type kinesins are (+) end-directed motors, while C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coil

>cd01372 KISc_KIF4 Kinesin motor domain, KIF4-like subfamily

Probab=99.89  E-value=1.8e-23  Score=156.46  Aligned_cols=95  Identities=29%  Similarity=0.395  Sum_probs=71.1

Q ss_pred             CCccccccccCccccccCC--EEEEecCC--CCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCc
Q psy12526          2 PSRDTTRVYLPTAKQVRKQ--TTYLTGTG--RSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYN   77 (103)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~--~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n   77 (103)
                      |.+-.+|+++....+..+.  .++...+.  .......+.|.||+|||       +.++|++||+.++.|+|+.+++|+|
T Consensus         2 ~i~V~vRvRP~~~~e~~~~~~~~~~~~~~~~~v~~~~~~~f~FD~vf~-------~~~~q~~vy~~~~~plv~~~~~G~n   74 (341)
T cd01372           2 SVRVAVRVRPLLPKELLEGCQVCVSVVPGEPQVTVGTDKSFTFDYVFD-------PSTSQEEVYNTCVAPLVDGLFEGYN   74 (341)
T ss_pred             CeEEEEECCCCCchhcccCCCeEEEEeCCCCEEEecCCcEEeccccCC-------CCCCHHHHHHHHHHHHHHHHhCCCc
Confidence            3444556666554443321  22222222  22223368999999999       8899999999999999999999999


Q ss_pred             EEEEeecCCCCCCceEeccCC------CCCCC
Q psy12526         78 ACIFAYGQTGEKTNYLLNGNG------PFPLI  103 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm~G~~------~~pGi  103 (103)
                      +||||||||||||||||+|+.      .++||
T Consensus        75 ~~i~ayG~tgSGKT~Tm~G~~~~~~~~~~~Gi  106 (341)
T cd01372          75 ATVLAYGQTGSGKTYTMGTAFTASEDEEEVGI  106 (341)
T ss_pred             cceeeecCCCCCCcEEecCCCccccccccCCh
Confidence            999999999999999999984      46776

Members of this group seem to perform a variety of functions, and have been implicated in neuronal organelle transport and chromosome segregation during mitosis. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain,

>cd01364 KISc_BimC_Eg5 Kinesin motor domain, BimC/Eg5 spindle pole proteins, participate in spindle assembly and chromosome segregation during cell division

Probab=99.89  E-value=6.4e-23  Score=154.26  Aligned_cols=60  Identities=40%  Similarity=0.658  Sum_probs=56.5

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPF  100 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~  100 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|....
T Consensus        46 ~~~~f~Fd~vf~-------~~~~q~~vy~~~~~plv~~~~~G~n~~i~ayG~tgSGKTyTl~G~~~~  105 (352)
T cd01364          46 STKTYTFDKVFG-------PEADQIEVYSQVVSPILDEVLMGYNCTIFAYGQTGTGKTYTMEGDRTD  105 (352)
T ss_pred             cceeEeccccCC-------CCCCHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCCCCcEEecCCCcc
Confidence            568999999999       899999999999999999999999999999999999999999998543

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type), N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil d

>cd01375 KISc_KIF9_like Kinesin motor domain, KIF9-like subgroup; might play a role in cell shape remodeling

Probab=99.89  E-value=3.8e-23  Score=154.80  Aligned_cols=62  Identities=39%  Similarity=0.695  Sum_probs=57.7

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC---CCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG---PFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~---~~pGi  103 (103)
                      ..+.|.||+||+       + ++|++||+.++.|+|+++++|+|+||||||||||||||||+|+.   .++||
T Consensus        46 ~~~~f~FD~vf~-------~-~~q~~vy~~~~~p~v~~~~~G~n~~i~ayG~tgSGKTyTm~G~~~~~~~~Gl  110 (334)
T cd01375          46 EDFSFKFDGVFH-------N-ASQEEVYETVAKPVVDSALDGYNGTIFAYGQTGAGKTFTMTGGTESYKDRGL  110 (334)
T ss_pred             CceEEEcCcccC-------C-CCHHHHHHHHHHHHHHHHhCCCccceeeecCCCCCCeEEccCCCCcccCCch
Confidence            457899999998       7 99999999999999999999999999999999999999999976   46776

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In most kinesins, the motor domain is found at the N-terminus (N-type). N-type kinesins are (+) end-directed motors, i.e. they transport cargo towards the (+) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for microtubule binding and locks in place. Also, the neck linker binds to the motor domain, which repositions the other head domain through the coiled-coil domain close to a second tubulin dimer, about 80

>PF00225 Kinesin: Kinesin motor domain; InterPro: IPR001752 Kinesin [, , ] is a microtubule-associated force-producing protein that may play a role in organelle transport

Probab=99.87  E-value=1.1e-22  Score=151.45  Aligned_cols=64  Identities=39%  Similarity=0.683  Sum_probs=59.8

Q ss_pred             CCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC--CCCCCC
Q psy12526         33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN--GPFPLI  103 (103)
Q Consensus        33 ~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~--~~~pGi  103 (103)
                      ...+.|.||+|||       +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+  ..++||
T Consensus        38 ~~~~~f~FD~vf~-------~~~~q~~vy~~~~~~~v~~~l~G~n~~i~ayG~tgSGKT~Tm~G~~~~~~~Gl  103 (335)
T PF00225_consen   38 QKEKSFRFDRVFD-------EDATQEDVYEEVVSPLVDSVLDGYNATIFAYGQTGSGKTYTMFGSNDPSEPGL  103 (335)
T ss_dssp             TEEEEEEESEEEE-------TTSTHHHHHHHHTHHHHHHHHTT-EEEEEEEESTTSSHHHHHTBSTSTTTBSH
T ss_pred             CCceEEEcCeEEC-------CCCCHHHHHHHHHHHHHHHhhcCCceEEEeeccccccccccccccccccccch
Confidence            3568999999999       899999999999999999999999999999999999999999999  889886

The kinesin motor activity is directed toward the microtubule's plus end. Kinesin is an oligomeric complex composed of two heavy chains and two light chains. The maintenance of the quaternary structure does not require interchain disulphide bonds. The heavy chain is composed of three structural domains: a large globular N-terminal domain which is responsible for the motor activity of kinesin (it is known to hydrolyse ATP, to bind and move on microtubules), a central alpha-helical coiled coil domain that mediates the heavy chain dimerisation; and a small globular C-terminal domain which interacts with other proteins (such as the kinesin light chains), vesicles and membranous organelles. A number of proteins have been recently found that contain a domain similar to that of the kinesin 'motor' domain [, ]: Drosophila melanogaster claret segregational protein (ncd). Ncd is required for normal chromosomal segregation in meiosis, in females, and in early mitotic divisions of the embryo. The ncd motor activity is directed toward the microtubule's minus end. Homo sapiens CENP-E []. CENP-E is a protein that associates with kinetochores during chromosome congression, relocates to the spindle midzone at anaphase, and is quantitatively discarded at the end of the cell division. CENP-E is probably an important motor molecule in chromosome movement and/or spindle elongation. H. sapiens mitotic kinesin-like protein-1 (MKLP-1), a motor protein whose activity is directed toward the microtubule's plus end. Saccharomyces cerevisiae KAR3 protein, which is essential for nuclear fusion during mating. KAR3 may mediate microtubule sliding during nuclear fusion and possibly mitosis. S. cerevisiae CIN8 and KIP1 proteins which are required for the assembly of the mitotic spindle. Both proteins seem to interact with spindle microtubules to produce an outwardly directed force acting upon the poles. Emericella nidulans (Aspergillus nidulans) bimC, which plays an important role in nuclear division. A. nidulans klpA. Caenorhabditis elegans unc-104, which may be required for the transport of substances needed for neuronal cell differentiation. C. elegans osm-3. Xenopus laevis Eg5, which may be involved in mitosis. Arabidopsis thaliana KatA, KatB and katC. Chlamydomonas reinhardtii FLA10/KHP1 and KLP1. Both proteins seem to play a role in the rotation or twisting of the microtubules of the flagella. C. elegans hypothetical protein T09A5.2. The kinesin motor domain is located in the N-terminal part of most of the above proteins, with the exception of KAR3, klpA, and ncd where it is located in the C-terminal section. The kinesin motor domain contains about 330 amino acids. An ATP-binding motif of type A is found near position 80 to 90, the C-terminal half of the domain is involved in microtubule-binding.; GO: 0003777 microtubule motor activity, 0005524 ATP binding, 0007018 microtubule-based movement; PDB: 3NWN_A 2Y5W_A 2Y65_C 3BFN_A 2WBE_C 2ZFL_A 2ZFI_A 1I6I_A 2ZFM_A 1IA0_K ....

>cd01366 KISc_C_terminal Kinesin motor domain, KIFC2/KIFC3/ncd-like carboxy-terminal kinesins

Probab=99.87  E-value=1.1e-21  Score=146.33  Aligned_cols=63  Identities=44%  Similarity=0.771  Sum_probs=59.3

Q ss_pred             CCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        33 ~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ...+.|.||+||+       +.++|++||+.+ .|+|+.+++|+|+||||||+|||||||||+|..+++||
T Consensus        42 ~~~~~f~fD~vf~-------~~~~q~~v~~~v-~p~v~~~~~G~~~~i~ayG~tgSGKT~tl~G~~~~~Gl  104 (329)
T cd01366          42 GKKKSFSFDRVFD-------PDASQEDVFEEV-SPLVQSALDGYNVCIFAYGQTGSGKTYTMEGPPENPGI  104 (329)
T ss_pred             CCceEEecCEEEC-------CCCCHHHHHHHH-HHHHHHHhCCCceEEEEeCCCCCCCcEEecCCCCCCCc
Confidence            3568999999999       899999999985 89999999999999999999999999999999999997

Ncd is a spindle motor protein necessary for chromosome segregation in meiosis. KIFC2/KIFC3-like kinesins have been implicated in motility of the Golgi apparatus as well as dentritic and axonal transport in neurons. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Kinesins are microtubule-dependent molecular motors that play important roles in intracellular transport and in cell division. In this subgroup the motor domain is found at the C-terminus (C-type). C-type kinesins are (-) end-directed motors, i.e. they transport cargo towards the (-) end of the microtubule. Kinesin motor domains hydrolyze ATP at a rate of about 80 per second, and move along the microtubule at a speed of about 6400 Angstroms per second. To achieve that, kinesin head groups work in pairs. Upon replacing ADP with ATP, a kinesin motor domain increases its affinity for mi

>KOG0240|consensus

Probab=99.85  E-value=1.3e-21  Score=152.84  Aligned_cols=59  Identities=42%  Similarity=0.777  Sum_probs=56.7

Q ss_pred             ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCC
Q psy12526         36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP  101 (103)
Q Consensus        36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~p  101 (103)
                      +.|.||+||.       +.++|++||+.++.|+|+.+|.|||+||||||||||||||||.|...+|
T Consensus        49 ~~y~FDrVF~-------pnatQe~Vy~~~a~~Iv~dVL~GYNGTvfaYGqT~sGKTytm~G~~~d~  107 (607)
T KOG0240|consen   49 KTYVFDRVFS-------PNATQEDVYEFAAKPIVDDVLLGYNGTVFAYGQTGSGKTYTMEGIGHDP  107 (607)
T ss_pred             ccceeeeecC-------CCccHHHHHHHHHHHHHHHHhcccceeEEEecCCCCCcceeecccCCCh
Confidence            8999999998       9999999999999999999999999999999999999999999998744

>smart00129 KISc Kinesin motor, catalytic domain

Probab=99.85  E-value=5.1e-21  Score=142.76  Aligned_cols=64  Identities=45%  Similarity=0.735  Sum_probs=61.0

Q ss_pred             CCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        33 ~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ...+.|.||+||+       +.++|++||+.++.|+|+.+++|+|+||||||+|||||||||+|+.+++||
T Consensus        43 ~~~~~f~fD~vf~-------~~~~q~~v~~~~~~p~v~~~~~G~~~~i~~yG~tgSGKT~tl~G~~~~~Gl  106 (335)
T smart00129       43 KEEKKFTFDKVFG-------ATASQEDVFEETAAPLVDSVLEGYNATIFAYGQTGSGKTYTMSGTPDSPGI  106 (335)
T ss_pred             CCCeEEecCEEEC-------CCCChHHHHHHHHHHHHHHHhcCCceeEEEeCCCCCCCceEecCCCCCCCH
Confidence            3568999999998       889999999999999999999999999999999999999999999999996

ATPase. Microtubule-dependent molecular motors that play important roles in intracellular transport of organelles and in cell division.

>COG5059 KIP1 Kinesin-like protein [Cytoskeleton]

Probab=99.80  E-value=8.9e-20  Score=144.82  Aligned_cols=62  Identities=39%  Similarity=0.669  Sum_probs=59.6

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ...|.||+||+       +.++|++||+..+.|+++.++.|||||||||||||+||||||.|..+.+||
T Consensus        55 ~~~~~fdkvf~-------~~~~q~~v~e~~~~~l~~~~l~g~N~TvfayGqTgsgKtyt~~G~~~~~Gi  116 (568)
T COG5059          55 EGTYAFDKVFG-------PSATQEDVYEETIKPLIDSLLLGYNCTVFAYGQTGSGKTYTMSGTEEEPGI  116 (568)
T ss_pred             ceEEEEeeccC-------CCCcHHHHHHHhhhhHHHHHHhcccceEEEEcccCCCceeEeecCccccch
Confidence            46799999999       889999999999999999999999999999999999999999999999997

>KOG0246|consensus

Probab=99.79  E-value=2.1e-19  Score=140.84  Aligned_cols=56  Identities=36%  Similarity=0.606  Sum_probs=54.0

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN   97 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~   97 (103)
                      ...|.||++|+       ..+++++||..+++|||..+|+|--+|+||||||||||||||.|+
T Consensus       257 n~~F~FDyaFD-------e~~sNe~VYrfTa~PlV~~IF~~G~ATCFAYGQTGSGKT~TMggd  312 (676)
T KOG0246|consen  257 NQKFRFDYAFD-------ESASNELVYRFTAKPLVKTIFEGGMATCFAYGQTGSGKTYTMGGD  312 (676)
T ss_pred             hceEEEeeecc-------cccchHHHHHHhhhHHHHHHHhCCceeeeeeccCCCCceeecccc
Confidence            57999999999       899999999999999999999999999999999999999999886

>KOG0247|consensus

Probab=99.73  E-value=7.1e-18  Score=135.00  Aligned_cols=63  Identities=30%  Similarity=0.522  Sum_probs=60.9

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.|.+||+       +.++|.+||+.++.|+|..++.|.|..+|.||-|||||||||.|+...+||
T Consensus        79 ~e~~fsFt~VF~-------p~~tQ~dvF~~~~~plV~dlLkgqn~LlFTyGVTgSGKTYTm~G~~~~~GI  141 (809)
T KOG0247|consen   79 MEKKFSFTKVFG-------PSVTQADVFDTTVAPLVKDLLKGQNSLLFTYGVTGSGKTYTMTGTPDRPGI  141 (809)
T ss_pred             eeeEeeeeeecC-------CCccHHHHHHHHhHHHHHHHHcccceeEEEeeccCCCceEEeecCCCCCCc
Confidence            468999999998       899999999999999999999999999999999999999999999999997

>cd01363 Motor_domain Myosin and Kinesin motor domain

Probab=99.67  E-value=5.6e-17  Score=112.61  Aligned_cols=43  Identities=47%  Similarity=0.862  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         60 VFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        60 v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ||+.++ |+|..+++|+|+||||||||||||||||+|..+++||
T Consensus         8 vf~~~~-~~v~~~~~G~n~~i~~yG~tGsGKT~Tm~G~~~~~Gi   50 (186)
T cd01363           8 VFRDVG-PLLQSALDGYNVCIFAYGQTGSGKTYTMEGKREGAGI   50 (186)
T ss_pred             HHHHHH-HHHHHHhCCcceeEEEECCCCCcceEecCCCCCCCCc
Confidence            999999 9999999999999999999999999999999999986

These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.

>KOG0244|consensus

Probab=99.64  E-value=2.4e-16  Score=128.61  Aligned_cols=62  Identities=32%  Similarity=0.671  Sum_probs=56.7

Q ss_pred             CCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC
Q psy12526         29 RSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN   97 (103)
Q Consensus        29 ~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~   97 (103)
                      .+.....++|+||+||.       ....|.++|+.+++|+++.+++|||+|++|||||||||||||.+.
T Consensus        25 qv~ig~~~s~t~d~v~~-------~~~~Q~~~~e~~V~~l~~~lf~gynatvlaygQtgsgkTytmgt~   86 (913)
T KOG0244|consen   25 QVAIGKDASFTYDKVFL-------DLESQKEVYESCVRPLREKLFAGYNATVLAYGQTGSGKTYTMGTN   86 (913)
T ss_pred             ceeecCCcceeeeeecc-------CchHHHHHHHHHHHHHHHHHhhhhcceeeeecccCCCceeecccc
Confidence            33445678999999998       777899999999999999999999999999999999999999887

>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication

Probab=96.43  E-value=0.002  Score=45.80  Aligned_cols=50  Identities=30%  Similarity=0.494  Sum_probs=30.9

Q ss_pred             ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..|+||.-.        ...+++..+..+ ..+.+.--..+|. ++-||.+|+||||-|.
T Consensus         3 ~~~tFdnfv--------~g~~N~~a~~~~-~~ia~~~~~~~~~-l~l~G~~G~GKTHLL~   52 (219)
T PF00308_consen    3 PKYTFDNFV--------VGESNELAYAAA-KAIAENPGERYNP-LFLYGPSGLGKTHLLQ   52 (219)
T ss_dssp             TT-SCCCS----------TTTTHHHHHHH-HHHHHSTTTSSSE-EEEEESTTSSHHHHHH
T ss_pred             CCCccccCC--------cCCcHHHHHHHH-HHHHhcCCCCCCc-eEEECCCCCCHHHHHH
Confidence            468888755        234566677544 3455542233554 7889999999999654

DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.

>PRK14086 dnaA chromosomal replication initiation protein; Provisional

Probab=95.96  E-value=0.0074  Score=49.23  Aligned_cols=51  Identities=25%  Similarity=0.414  Sum_probs=33.4

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ...|+||..+-        ..+++..|..+ ..+++..-..+|. ||-||.+|+||||-+.
T Consensus       282 ~~~~TFDnFvv--------G~sN~~A~aaa-~avae~~~~~~Np-L~LyG~sGsGKTHLL~  332 (617)
T PRK14086        282 NPKYTFDTFVI--------GASNRFAHAAA-VAVAEAPAKAYNP-LFIYGESGLGKTHLLH  332 (617)
T ss_pred             CCCCCHhhhcC--------CCccHHHHHHH-HHHHhCccccCCc-EEEECCCCCCHHHHHH
Confidence            46788877553        23444555443 3455544446775 7899999999999765

>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]

Probab=95.92  E-value=0.0076  Score=48.63  Aligned_cols=48  Identities=17%  Similarity=0.256  Sum_probs=33.7

Q ss_pred             ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +.|....-|.       |.-+|-    ..+..|++.+-+|.---+ -.|.|||||||||.
T Consensus         3 ~~F~l~s~f~-------PaGDQP----~AI~~Lv~gi~~g~~~Qt-LLGvTGSGKTfT~A   50 (663)
T COG0556           3 KPFKLHSPFK-------PAGDQP----EAIAELVEGIENGLKHQT-LLGVTGSGKTFTMA   50 (663)
T ss_pred             CceEeccCCC-------CCCCcH----HHHHHHHHHHhcCceeeE-EeeeccCCchhHHH
Confidence            3466666665       677774    445677777777765443 37999999999985

>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.90  E-value=0.004  Score=47.15  Aligned_cols=30  Identities=20%  Similarity=0.223  Sum_probs=26.9

Q ss_pred             HHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         66 RDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+++..+.+--++.|+.-|+|||||+.||-
T Consensus       114 P~i~~~~~~~~~GLILVTGpTGSGKSTTlA  143 (353)
T COG2805         114 PPIVRELAESPRGLILVTGPTGSGKSTTLA  143 (353)
T ss_pred             CHHHHHHHhCCCceEEEeCCCCCcHHHHHH
Confidence            677888888889999999999999999874

>PRK06620 hypothetical protein; Validated

Probab=95.43  E-value=0.015  Score=41.27  Aligned_cols=51  Identities=16%  Similarity=0.298  Sum_probs=33.7

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCc---EEEEeecCCCCCCceEecc
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYN---ACIFAYGQTGEKTNYLLNG   96 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n---~ti~aYGqtgSGKT~Tm~G   96 (103)
                      ...|+||.-..        ..+++..|..+. .+.+ .. ++|   -.++-||..|+||||-+..
T Consensus        10 ~~~~tfd~Fvv--------g~~N~~a~~~~~-~~~~-~~-~~~~~~~~l~l~Gp~G~GKThLl~a   63 (214)
T PRK06620         10 SSKYHPDEFIV--------SSSNDQAYNIIK-NWQC-GF-GVNPYKFTLLIKGPSSSGKTYLTKI   63 (214)
T ss_pred             CCCCCchhhEe--------cccHHHHHHHHH-HHHH-cc-ccCCCcceEEEECCCCCCHHHHHHH
Confidence            45688888774        345666776654 3332 11 333   3588999999999997754

>PRK09087 hypothetical protein; Validated

Probab=95.37  E-value=0.017  Score=41.26  Aligned_cols=48  Identities=13%  Similarity=0.102  Sum_probs=30.9

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +..|+||.-+        ...++..+|..+     .......|-.++-||.+||||||-+.
T Consensus        15 ~~~~~~~~Fi--------~~~~N~~a~~~l-----~~~~~~~~~~l~l~G~~GsGKThLl~   62 (226)
T PRK09087         15 DPAYGRDDLL--------VTESNRAAVSLV-----DHWPNWPSPVVVLAGPVGSGKTHLAS   62 (226)
T ss_pred             CCCCChhcee--------ecCchHHHHHHH-----HhcccCCCCeEEEECCCCCCHHHHHH
Confidence            3567888766        334456577643     22222235557889999999999765

>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=95.02  E-value=0.013  Score=46.65  Aligned_cols=30  Identities=20%  Similarity=0.158  Sum_probs=25.4

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYLLNG   96 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G   96 (103)
                      ..+..+++--++-|+.-|+||||||.||+.
T Consensus       248 ~~~~~~~~~p~GliLvTGPTGSGKTTTLY~  277 (500)
T COG2804         248 ARLLRLLNRPQGLILVTGPTGSGKTTTLYA  277 (500)
T ss_pred             HHHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence            455677788889999999999999999974

>PRK06893 DNA replication initiation factor; Validated

Probab=94.83  E-value=0.029  Score=39.93  Aligned_cols=24  Identities=13%  Similarity=0.223  Sum_probs=19.4

Q ss_pred             hhCCCcEEEEeecCCCCCCceEec
Q psy12526         72 AFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        72 ~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +-..+|-.++-||.+|+||||-+.
T Consensus        34 ~~~~~~~~l~l~G~~G~GKThL~~   57 (229)
T PRK06893         34 FIDLQQPFFYIWGGKSSGKSHLLK   57 (229)
T ss_pred             hhccCCCeEEEECCCCCCHHHHHH
Confidence            335677788999999999999654

>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3

Probab=94.76  E-value=0.016  Score=38.41  Aligned_cols=37  Identities=8%  Similarity=0.049  Sum_probs=22.6

Q ss_pred             CHHHHHHHHHHHHHHHhhCC-CcEEEEeecCCCCCCceEecc
Q psy12526         56 SQEKVFDALGRDILDNAFQG-YNACIFAYGQTGEKTNYLLNG   96 (103)
Q Consensus        56 ~q~~v~~~~~~~lv~~~~~G-~n~ti~aYGqtgSGKT~Tm~G   96 (103)
                      -|.++...+.    +.+-.. .+..++..+.||||||++|..
T Consensus         7 ~Q~~ai~~i~----~~~~~~~~~~~~ll~~~tGsGKT~~~~~   44 (184)
T PF04851_consen    7 YQQEAIARII----NSLENKKEERRVLLNAPTGSGKTIIALA   44 (184)
T ss_dssp             HHHHHHHHHH----HHHHTTSGCSEEEEEESTTSSHHHHHHH
T ss_pred             HHHHHHHHHH----HHHHhcCCCCCEEEEECCCCCcChhhhh
Confidence            4555555443    333333 234455678999999998863

1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....

>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold

Probab=94.54  E-value=0.03  Score=35.12  Aligned_cols=26  Identities=15%  Similarity=0.137  Sum_probs=17.7

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...+.......++-+|.+|+|||+.+
T Consensus        11 ~~~~~~~~~~~v~i~G~~G~GKT~l~   36 (151)
T cd00009          11 REALELPPPKNLLLYGPPGTGKTTLA   36 (151)
T ss_pred             HHHHhCCCCCeEEEECCCCCCHHHHH
Confidence            33333333446788999999999754

The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.

>TIGR02928 orc1/cdc6 family replication initiation protein

Probab=94.42  E-value=0.032  Score=41.76  Aligned_cols=39  Identities=18%  Similarity=0.415  Sum_probs=25.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceEe
Q psy12526         55 ASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...++-.+.+.. .+..++. +....++-||+.|+|||+++
T Consensus        18 ~gRe~e~~~l~~-~l~~~~~~~~~~~i~I~G~~GtGKT~l~   57 (365)
T TIGR02928        18 VHRDEQIEELAK-ALRPILRGSRPSNVFIYGKTGTGKTAVT   57 (365)
T ss_pred             CCcHHHHHHHHH-HHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            445555555543 3444444 44557889999999999876

Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.

>PRK00411 cdc6 cell division control protein 6; Reviewed

Probab=94.41  E-value=0.038  Score=41.79  Aligned_cols=40  Identities=18%  Similarity=0.305  Sum_probs=25.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceEe
Q psy12526         54 FASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        54 ~~~q~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ....++-.+.+. ..+...++ +....++-||+.|+|||+++
T Consensus        32 l~~Re~e~~~l~-~~l~~~~~~~~~~~~lI~G~~GtGKT~l~   72 (394)
T PRK00411         32 LPHREEQIEELA-FALRPALRGSRPLNVLIYGPPGTGKTTTV   72 (394)
T ss_pred             CCCHHHHHHHHH-HHHHHHhCCCCCCeEEEECCCCCCHHHHH
Confidence            334455555554 33344443 34456789999999999875

>PRK14088 dnaA chromosomal replication initiation protein; Provisional

Probab=94.27  E-value=0.035  Score=43.46  Aligned_cols=50  Identities=22%  Similarity=0.367  Sum_probs=31.7

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ...|+||.-.        ...+++..|..+. .+.+. -..+|. ++-||.+|+||||-|.
T Consensus        99 ~~~~tFdnFv--------~g~~n~~a~~~~~-~~~~~-~~~~n~-l~lyG~~G~GKTHLl~  148 (440)
T PRK14088         99 NPDYTFENFV--------VGPGNSFAYHAAL-EVAKN-PGRYNP-LFIYGGVGLGKTHLLQ  148 (440)
T ss_pred             CCCCcccccc--------cCCchHHHHHHHH-HHHhC-cCCCCe-EEEEcCCCCcHHHHHH
Confidence            3567777654        2345556665543 33332 123675 8999999999999765

>PRK00149 dnaA chromosomal replication initiation protein; Reviewed

Probab=93.85  E-value=0.041  Score=42.88  Aligned_cols=50  Identities=26%  Similarity=0.374  Sum_probs=29.4

Q ss_pred             ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..|+||.-.        ...+++..|..+ ..+.+.--..+| .++-||.+|+||||.+.
T Consensus       117 ~~~tfd~fv--------~g~~n~~a~~~~-~~~~~~~~~~~~-~l~l~G~~G~GKThL~~  166 (450)
T PRK00149        117 PKYTFDNFV--------VGKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH  166 (450)
T ss_pred             CCCcccccc--------cCCCcHHHHHHH-HHHHhCcCccCC-eEEEECCCCCCHHHHHH
Confidence            556666533        223455555544 334333222345 47789999999999764

>PRK08084 DNA replication initiation factor; Provisional

Probab=93.81  E-value=0.073  Score=38.06  Aligned_cols=48  Identities=21%  Similarity=0.384  Sum_probs=29.2

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +..++||.-+        .. .+...+..+- .+..   ..-...++-||.+|+||||-+.
T Consensus        16 ~~~~~fd~f~--------~~-~n~~a~~~l~-~~~~---~~~~~~l~l~Gp~G~GKThLl~   63 (235)
T PRK08084         16 PDDETFASFY--------PG-DNDSLLAALQ-NALR---QEHSGYIYLWSREGAGRSHLLH   63 (235)
T ss_pred             CCcCCccccc--------cC-ccHHHHHHHH-HHHh---CCCCCeEEEECCCCCCHHHHHH
Confidence            4556777544        33 5555665443 3322   2222368889999999999765

>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown

Probab=93.79  E-value=0.018  Score=40.50  Aligned_cols=16  Identities=25%  Similarity=0.453  Sum_probs=13.2

Q ss_pred             EEeecCCCCCCceEec
Q psy12526         80 IFAYGQTGEKTNYLLN   95 (103)
Q Consensus        80 i~aYGqtgSGKT~Tm~   95 (103)
                      +...|.||||||+|+.
T Consensus        26 ~~I~G~TGsGKS~~~~   41 (229)
T PF01935_consen   26 IAIFGTTGSGKSNTVK   41 (229)
T ss_pred             EEEECCCCCCHHHHHH
Confidence            3468999999999873

It contains several conserved aspartates and histidines that could be metal ligands.

>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]

Probab=93.74  E-value=0.076  Score=38.69  Aligned_cols=40  Identities=18%  Similarity=0.233  Sum_probs=27.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ....+..++..+. .+++.+-.+.|  ++-||+.|+||||-..
T Consensus        84 ~~~~~~~~l~~~~-~~~~~~~~~~n--l~l~G~~G~GKThLa~  123 (254)
T COG1484          84 QPGIDKKALEDLA-SLVEFFERGEN--LVLLGPPGVGKTHLAI  123 (254)
T ss_pred             CcchhHHHHHHHH-HHHHHhccCCc--EEEECCCCCcHHHHHH
Confidence            3446777777664 56656555555  4459999999999543

>TIGR00362 DnaA chromosomal replication initiator protein DnaA

Probab=93.69  E-value=0.05  Score=41.73  Aligned_cols=50  Identities=26%  Similarity=0.374  Sum_probs=28.7

Q ss_pred             ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..|+||.-.        ....+...+..+ ..+.+.--..+| .++-||.+|+||||.+.
T Consensus       105 ~~~tfd~fi--------~g~~n~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKThL~~  154 (405)
T TIGR00362       105 PKYTFDNFV--------VGKSNRLAHAAA-LAVAENPGKAYN-PLFIYGGVGLGKTHLLH  154 (405)
T ss_pred             CCCcccccc--------cCCcHHHHHHHH-HHHHhCcCccCC-eEEEECCCCCcHHHHHH
Confidence            456666532        223455555443 333333111244 46789999999999764

DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).

>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]

Probab=93.64  E-value=0.064  Score=41.17  Aligned_cols=33  Identities=27%  Similarity=0.458  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHhhCCC-cEEEEeecCCCCCCceEe
Q psy12526         61 FDALGRDILDNAFQGY-NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        61 ~~~~~~~lv~~~~~G~-n~ti~aYGqtgSGKT~Tm   94 (103)
                      ++.+. .++..++.|. ...++.||.+|+|||.|+
T Consensus        26 i~~l~-~~l~~~~~~~~p~n~~iyG~~GTGKT~~~   59 (366)
T COG1474          26 INQLA-SFLAPALRGERPSNIIIYGPTGTGKTATV   59 (366)
T ss_pred             HHHHH-HHHHHHhcCCCCccEEEECCCCCCHhHHH
Confidence            34443 3344445444 333999999999999875

>PRK10436 hypothetical protein; Provisional

Probab=93.51  E-value=0.031  Score=44.22  Aligned_cols=28  Identities=25%  Similarity=0.273  Sum_probs=22.2

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+..++..-++.|+.-|.||||||.||.
T Consensus       209 ~l~~~~~~~~GliLvtGpTGSGKTTtL~  236 (462)
T PRK10436        209 QFRQALQQPQGLILVTGPTGSGKTVTLY  236 (462)
T ss_pred             HHHHHHHhcCCeEEEECCCCCChHHHHH
Confidence            3445555567889999999999999985

>TIGR02533 type_II_gspE general secretory pathway protein E

Probab=93.48  E-value=0.036  Score=44.02  Aligned_cols=28  Identities=18%  Similarity=0.230  Sum_probs=22.2

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+..++..-++.|+..|.||||||.||.
T Consensus       233 ~l~~~~~~~~GlilitGptGSGKTTtL~  260 (486)
T TIGR02533       233 RFERLIRRPHGIILVTGPTGSGKTTTLY  260 (486)
T ss_pred             HHHHHHhcCCCEEEEEcCCCCCHHHHHH
Confidence            4455566666788899999999999986

This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.

>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB

Probab=93.34  E-value=0.036  Score=44.68  Aligned_cols=28  Identities=18%  Similarity=0.243  Sum_probs=22.2

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+..++..-++.|+..|.||||||.||.
T Consensus       307 ~l~~~~~~~~Glilv~G~tGSGKTTtl~  334 (564)
T TIGR02538       307 LFLEAIHKPQGMVLVTGPTGSGKTVSLY  334 (564)
T ss_pred             HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence            3445556667889999999999999984

This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.

>PRK06526 transposase; Provisional

Probab=93.31  E-value=0.034  Score=40.54  Aligned_cols=20  Identities=20%  Similarity=0.172  Sum_probs=16.0

Q ss_pred             CCCcEEEEeecCCCCCCceEec
Q psy12526         74 QGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+.|  |+-+|.+|+||||.+.
T Consensus        97 ~~~n--lll~Gp~GtGKThLa~  116 (254)
T PRK06526         97 GKEN--VVFLGPPGTGKTHLAI  116 (254)
T ss_pred             cCce--EEEEeCCCCchHHHHH
Confidence            4455  6789999999999765

>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]

Probab=93.25  E-value=0.059  Score=42.09  Aligned_cols=51  Identities=24%  Similarity=0.346  Sum_probs=32.9

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceEec
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ....|+||.-.        ...+++..+.... .+ ...-. -|| -||-||.+|+||||-|.
T Consensus        80 l~~~ytFdnFv--------~g~~N~~A~aa~~-~v-a~~~g~~~n-plfi~G~~GlGKTHLl~  131 (408)
T COG0593          80 LNPKYTFDNFV--------VGPSNRLAYAAAK-AV-AENPGGAYN-PLFIYGGVGLGKTHLLQ  131 (408)
T ss_pred             CCCCCchhhee--------eCCchHHHHHHHH-HH-HhccCCcCC-cEEEECCCCCCHHHHHH
Confidence            45678998866        4456655554432 22 22222 255 68899999999999775

>TIGR01420 pilT_fam pilus retraction protein PilT

Probab=92.98  E-value=0.048  Score=41.25  Aligned_cols=28  Identities=21%  Similarity=0.256  Sum_probs=20.3

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+..++.--.+.|+-.|.||||||.||.
T Consensus       113 ~l~~~~~~~~g~ili~G~tGSGKTT~l~  140 (343)
T TIGR01420       113 VLRELAERPRGLILVTGPTGSGKSTTLA  140 (343)
T ss_pred             HHHHHHhhcCcEEEEECCCCCCHHHHHH
Confidence            3444443334678899999999999885

This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.

>PRK08116 hypothetical protein; Validated

Probab=92.96  E-value=0.076  Score=38.92  Aligned_cols=40  Identities=20%  Similarity=0.357  Sum_probs=26.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhC--CCcEEEEeecCCCCCCceEec
Q psy12526         55 ASQEKVFDALGRDILDNAFQ--GYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..++..+..+ ...++.+.+  ..|..++-||.+|+||||-+.
T Consensus        91 ~~~~~a~~~a-~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~  132 (268)
T PRK08116         91 KGSEKAYKIA-RKYVKKFEEMKKENVGLLLWGSVGTGKTYLAA  132 (268)
T ss_pred             hHHHHHHHHH-HHHHHHHHhhccCCceEEEECCCCCCHHHHHH
Confidence            4455555543 455565443  335568899999999999654

>PRK05642 DNA replication initiation factor; Validated

Probab=92.95  E-value=0.1  Score=37.28  Aligned_cols=18  Identities=28%  Similarity=0.565  Sum_probs=15.0

Q ss_pred             EEEEeecCCCCCCceEec
Q psy12526         78 ACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..++-||.+|+||||-+.
T Consensus        46 ~~l~l~G~~G~GKTHLl~   63 (234)
T PRK05642         46 SLIYLWGKDGVGRSHLLQ   63 (234)
T ss_pred             CeEEEECCCCCCHHHHHH
Confidence            457789999999999654

>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ

Probab=92.73  E-value=0.057  Score=41.60  Aligned_cols=19  Identities=21%  Similarity=0.230  Sum_probs=16.0

Q ss_pred             cEEEEeecCCCCCCceEec
Q psy12526         77 NACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ++.|+..|.||||||.||.
T Consensus       149 ~GlilI~G~TGSGKTT~l~  167 (372)
T TIGR02525       149 AGLGLICGETGSGKSTLAA  167 (372)
T ss_pred             CCEEEEECCCCCCHHHHHH
Confidence            4567889999999999873

Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).

>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP)

Probab=92.56  E-value=0.069  Score=39.08  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=19.8

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +..++..-.+.|+-.|.||||||.+|.
T Consensus        72 l~~~~~~~~GlilisG~tGSGKTT~l~   98 (264)
T cd01129          72 FRKLLEKPHGIILVTGPTGSGKTTTLY   98 (264)
T ss_pred             HHHHHhcCCCEEEEECCCCCcHHHHHH
Confidence            344454445567889999999999874

It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.

>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]

Probab=92.49  E-value=0.046  Score=39.47  Aligned_cols=29  Identities=34%  Similarity=0.526  Sum_probs=19.4

Q ss_pred             HHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         66 RDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..++...+.+ .+.|+--|.||||||.+|.
T Consensus       117 ~~~l~~~v~~-~~~ili~G~tGSGKTT~l~  145 (270)
T PF00437_consen  117 AEFLRSAVRG-RGNILISGPTGSGKTTLLN  145 (270)
T ss_dssp             HHHHHHCHHT-TEEEEEEESTTSSHHHHHH
T ss_pred             HHHHhhcccc-ceEEEEECCCccccchHHH
Confidence            3444443333 4567778999999998873

These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....

>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda

Probab=92.34  E-value=0.16  Score=35.38  Aligned_cols=21  Identities=19%  Similarity=0.442  Sum_probs=17.3

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ......|+-||++|+||||.+
T Consensus        35 ~~~~~~lll~G~~G~GKT~la   55 (226)
T TIGR03420        35 GKGDRFLYLWGESGSGKSHLL   55 (226)
T ss_pred             cCCCCeEEEECCCCCCHHHHH
Confidence            455667889999999999865

Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.

>PRK12377 putative replication protein; Provisional

Probab=92.27  E-value=0.17  Score=36.84  Aligned_cols=39  Identities=21%  Similarity=0.291  Sum_probs=26.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..|..++..+ ..++..+..+. ..++-+|.+|+||||.+.
T Consensus        81 ~~~~~a~~~a-~~~a~~~~~~~-~~l~l~G~~GtGKThLa~  119 (248)
T PRK12377         81 DGQRYALSQA-KSIADELMTGC-TNFVFSGKPGTGKNHLAA  119 (248)
T ss_pred             hhHHHHHHHH-HHHHHHHHhcC-CeEEEECCCCCCHHHHHH
Confidence            4566566543 46666665554 357789999999999764

>PRK08727 hypothetical protein; Validated

Probab=92.20  E-value=0.057  Score=38.58  Aligned_cols=17  Identities=18%  Similarity=0.284  Sum_probs=14.6

Q ss_pred             EEEeecCCCCCCceEec
Q psy12526         79 CIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm~   95 (103)
                      .|+-||.+|+||||-+.
T Consensus        43 ~l~l~G~~G~GKThL~~   59 (233)
T PRK08727         43 WLYLSGPAGTGKTHLAL   59 (233)
T ss_pred             eEEEECCCCCCHHHHHH
Confidence            48899999999999654

>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB

Probab=92.14  E-value=0.072  Score=40.76  Aligned_cols=20  Identities=30%  Similarity=0.458  Sum_probs=17.2

Q ss_pred             CcEEEEeecCCCCCCceEec
Q psy12526         76 YNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        76 ~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      -...|+-.|.||||||.||.
T Consensus       133 ~~glilI~GpTGSGKTTtL~  152 (358)
T TIGR02524       133 QEGIVFITGATGSGKSTLLA  152 (358)
T ss_pred             cCCEEEEECCCCCCHHHHHH
Confidence            46788899999999999874

Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.

>PRK08181 transposase; Validated

Probab=92.10  E-value=0.18  Score=37.18  Aligned_cols=20  Identities=25%  Similarity=0.516  Sum_probs=15.9

Q ss_pred             CCCcEEEEeecCCCCCCceEec
Q psy12526         74 QGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+.|  |+-||.+|+||||-+.
T Consensus       105 ~~~n--lll~Gp~GtGKTHLa~  124 (269)
T PRK08181        105 KGAN--LLLFGPPGGGKSHLAA  124 (269)
T ss_pred             cCce--EEEEecCCCcHHHHHH
Confidence            4555  6789999999999654

>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases

Probab=91.96  E-value=0.079  Score=34.82  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=18.8

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ++..+++|.+  ++.-+.||+|||....
T Consensus         7 ~~~~i~~~~~--~li~aptGsGKT~~~~   32 (169)
T PF00270_consen    7 AIEAIISGKN--VLISAPTGSGKTLAYI   32 (169)
T ss_dssp             HHHHHHTTSE--EEEECSTTSSHHHHHH
T ss_pred             HHHHHHcCCC--EEEECCCCCccHHHHH
Confidence            3444556666  6789999999998654

Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....

>PRK14087 dnaA chromosomal replication initiation protein; Provisional

Probab=91.85  E-value=0.1  Score=41.00  Aligned_cols=50  Identities=28%  Similarity=0.420  Sum_probs=29.5

Q ss_pred             eEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526         37 TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG   96 (103)
Q Consensus        37 ~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G   96 (103)
                      .|+||.-.        ...+++..|..+ ..+...--..+| -+|-||.+|+||||-|..
T Consensus       111 ~~tFdnFv--------~g~~n~~A~~aa-~~~a~~~~~~~n-pl~i~G~~G~GKTHLl~A  160 (450)
T PRK14087        111 ENTFENFV--------IGSSNEQAFIAV-QTVSKNPGISYN-PLFIYGESGMGKTHLLKA  160 (450)
T ss_pred             ccchhccc--------CCCcHHHHHHHH-HHHHhCcCcccC-ceEEECCCCCcHHHHHHH
Confidence            46777644        233455566443 344332111244 478899999999997753

>PRK07952 DNA replication protein DnaC; Validated

Probab=91.69  E-value=0.23  Score=36.13  Aligned_cols=39  Identities=13%  Similarity=0.129  Sum_probs=25.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..|..++..+. ..++....+.+ .++-+|.+|+||||.+.
T Consensus        79 ~~q~~al~~a~-~~~~~~~~~~~-~~~l~G~~GtGKThLa~  117 (244)
T PRK07952         79 EGQMNALSKAR-QYVEEFDGNIA-SFIFSGKPGTGKNHLAA  117 (244)
T ss_pred             chHHHHHHHHH-HHHHhhccCCc-eEEEECCCCCCHHHHHH
Confidence            35655665543 44555444433 67889999999999654

>PRK06835 DNA replication protein DnaC; Validated

Probab=91.38  E-value=0.15  Score=38.60  Aligned_cols=36  Identities=25%  Similarity=0.526  Sum_probs=23.9

Q ss_pred             HHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         58 EKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        58 ~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +.+++.+ ...++.+-... -.|+-||.+|+||||-+.
T Consensus       166 ~~~~~~~-~~f~~~f~~~~-~~Lll~G~~GtGKThLa~  201 (329)
T PRK06835        166 EKILEKC-KNFIENFDKNN-ENLLFYGNTGTGKTFLSN  201 (329)
T ss_pred             HHHHHHH-HHHHHHHhccC-CcEEEECCCCCcHHHHHH
Confidence            3344433 35666655444 458899999999999654

>PRK13894 conjugal transfer ATPase TrbB; Provisional

Probab=91.22  E-value=0.12  Score=39.04  Aligned_cols=28  Identities=25%  Similarity=0.335  Sum_probs=18.4

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .++..++.+. ..|+-.|.||||||.+|.
T Consensus       139 ~~L~~~v~~~-~~ilI~G~tGSGKTTll~  166 (319)
T PRK13894        139 EAIIAAVRAH-RNILVIGGTGSGKTTLVN  166 (319)
T ss_pred             HHHHHHHHcC-CeEEEECCCCCCHHHHHH
Confidence            4455555443 345667999999997653

>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif

Probab=90.96  E-value=0.19  Score=34.57  Aligned_cols=16  Identities=25%  Similarity=0.453  Sum_probs=13.5

Q ss_pred             EEEeecCCCCCCceEe
Q psy12526         79 CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm   94 (103)
                      .++-+|++|+||||..
T Consensus        49 ~l~l~G~~G~GKThLa   64 (178)
T PF01695_consen   49 NLILYGPPGTGKTHLA   64 (178)
T ss_dssp             EEEEEESTTSSHHHHH
T ss_pred             EEEEEhhHhHHHHHHH
Confidence            4777999999999954

They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.

>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB

Probab=90.79  E-value=0.11  Score=38.82  Aligned_cols=28  Identities=32%  Similarity=0.430  Sum_probs=19.5

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .++..++.+ ...|+-.|.||||||.+|.
T Consensus       123 ~~L~~~v~~-~~~ilI~G~tGSGKTTll~  150 (299)
T TIGR02782       123 DVLREAVLA-RKNILVVGGTGSGKTTLAN  150 (299)
T ss_pred             HHHHHHHHc-CCeEEEECCCCCCHHHHHH
Confidence            444455543 3457789999999998763

The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.

>PRK09183 transposase/IS protein; Provisional

Probab=90.40  E-value=0.18  Score=36.74  Aligned_cols=22  Identities=23%  Similarity=0.170  Sum_probs=15.9

Q ss_pred             hhCCCcEEEEeecCCCCCCceEec
Q psy12526         72 AFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        72 ~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +-.|.|  |+-+|++|+||||-+.
T Consensus        99 i~~~~~--v~l~Gp~GtGKThLa~  120 (259)
T PRK09183         99 IERNEN--IVLLGPSGVGKTHLAI  120 (259)
T ss_pred             hhcCCe--EEEEeCCCCCHHHHHH
Confidence            345655  4469999999999654

>PRK08939 primosomal protein DnaI; Reviewed

Probab=90.30  E-value=0.26  Score=36.89  Aligned_cols=39  Identities=26%  Similarity=0.373  Sum_probs=25.8

Q ss_pred             CHHHHHHHHHHHHHHHhhCC-CcEEEEeecCCCCCCceEec
Q psy12526         56 SQEKVFDALGRDILDNAFQG-YNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        56 ~q~~v~~~~~~~lv~~~~~G-~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+..++..+ ...++....| ..-.|+-||.+|+||||-+.
T Consensus       135 ~~~~~~~~~-~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~  174 (306)
T PRK08939        135 DRLDALMAA-LDFLEAYPPGEKVKGLYLYGDFGVGKSYLLA  174 (306)
T ss_pred             HHHHHHHHH-HHHHHHhhccCCCCeEEEECCCCCCHHHHHH
Confidence            555666643 4566655432 22358889999999999664

>PRK12402 replication factor C small subunit 2; Reviewed

Probab=90.10  E-value=0.24  Score=36.41  Aligned_cols=21  Identities=10%  Similarity=0.123  Sum_probs=15.8

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+-...++-||+.|+|||+++
T Consensus        33 ~~~~~~lll~Gp~GtGKT~la   53 (337)
T PRK12402         33 SPNLPHLLVQGPPGSGKTAAV   53 (337)
T ss_pred             CCCCceEEEECCCCCCHHHHH
Confidence            343235778999999999865

>PRK08903 DnaA regulatory inactivator Hda; Validated

Probab=89.94  E-value=0.29  Score=34.35  Aligned_cols=19  Identities=21%  Similarity=0.504  Sum_probs=15.4

Q ss_pred             CcEEEEeecCCCCCCceEe
Q psy12526         76 YNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        76 ~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+..++-||+.|+||||-+
T Consensus        41 ~~~~~~l~G~~G~GKT~La   59 (227)
T PRK08903         41 ADRFFYLWGEAGSGRSHLL   59 (227)
T ss_pred             CCCeEEEECCCCCCHHHHH
Confidence            3456788999999999854

>PTZ00112 origin recognition complex 1 protein; Provisional

Probab=89.93  E-value=0.26  Score=42.50  Aligned_cols=36  Identities=19%  Similarity=0.380  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHhhC--CCcEEEEeecCCCCCCceEe
Q psy12526         58 EKVFDALGRDILDNAFQ--GYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        58 ~~v~~~~~~~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ++=++.+. .+|..++.  +-+.+|+-||.+|+|||.|+
T Consensus       761 EeEIeeLa-sfL~paIkgsgpnnvLYIyG~PGTGKTATV  798 (1164)
T PTZ00112        761 EKEIKEVH-GFLESGIKQSGSNQILYISGMPGTGKTATV  798 (1164)
T ss_pred             HHHHHHHH-HHHHHHHhcCCCCceEEEECCCCCCHHHHH
Confidence            33334443 33444443  44567889999999999875

>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP

Probab=89.87  E-value=0.11  Score=35.64  Aligned_cols=27  Identities=26%  Similarity=0.367  Sum_probs=18.5

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      |.+.+-.+.+..++-||+.|+|||+.|
T Consensus        11 l~~~l~~~~~~~~~l~G~rg~GKTsLl   37 (234)
T PF01637_consen   11 LKELLESGPSQHILLYGPRGSGKTSLL   37 (234)
T ss_dssp             HHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred             HHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence            333334455678889999999999865

; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.

>PRK13833 conjugal transfer protein TrbB; Provisional

Probab=89.78  E-value=0.24  Score=37.54  Aligned_cols=24  Identities=29%  Similarity=0.369  Sum_probs=17.2

Q ss_pred             HHHhh-CCCcEEEEeecCCCCCCceEe
Q psy12526         69 LDNAF-QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        69 v~~~~-~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      +..++ .+.|  |+--|.||||||.+|
T Consensus       137 L~~~v~~~~n--ilI~G~tGSGKTTll  161 (323)
T PRK13833        137 IRSAIDSRLN--IVISGGTGSGKTTLA  161 (323)
T ss_pred             HHHHHHcCCe--EEEECCCCCCHHHHH
Confidence            33433 4444  678999999999877

>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril

Probab=89.62  E-value=0.22  Score=40.89  Aligned_cols=22  Identities=18%  Similarity=0.155  Sum_probs=19.3

Q ss_pred             hCCCcEEEEeecCCCCCCceEe
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..+-|-||+-.|++|||||.++
T Consensus        81 ~~~~~Q~IiisGeSGsGKTe~~  102 (689)
T PF00063_consen   81 RTRQNQSIIISGESGSGKTETS  102 (689)
T ss_dssp             HHTSEEEEEEEESTTSSHHHHH
T ss_pred             ccccccceeeccccccccccch
Confidence            4578999999999999999863

Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....

>PF13245 AAA_19: Part of AAA domain

Probab=89.53  E-value=0.14  Score=30.54  Aligned_cols=16  Identities=19%  Similarity=0.262  Sum_probs=12.8

Q ss_pred             EEeecCCCCCCceEec
Q psy12526         80 IFAYGQTGEKTNYLLN   95 (103)
Q Consensus        80 i~aYGqtgSGKT~Tm~   95 (103)
                      +..-|..|||||+|+.
T Consensus        13 ~vv~g~pGtGKT~~~~   28 (76)
T PF13245_consen   13 FVVQGPPGTGKTTTLA   28 (76)
T ss_pred             EEEECCCCCCHHHHHH
Confidence            3348999999998764

>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies

Probab=89.42  E-value=0.091  Score=36.36  Aligned_cols=17  Identities=29%  Similarity=0.442  Sum_probs=12.0

Q ss_pred             EEEeecCCCCCCceEec
Q psy12526         79 CIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm~   95 (103)
                      -++.+|.+|||||.+|.
T Consensus        40 h~li~G~tgsGKS~~l~   56 (205)
T PF01580_consen   40 HLLIAGATGSGKSTLLR   56 (205)
T ss_dssp             SEEEE--TTSSHHHHHH
T ss_pred             eEEEEcCCCCCccHHHH
Confidence            36789999999998664

The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.

>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=89.21  E-value=0.3  Score=36.92  Aligned_cols=30  Identities=13%  Similarity=0.238  Sum_probs=21.9

Q ss_pred             HHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         66 RDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+++..+.--.-+.|+.-|.|||||+.||.
T Consensus       116 Pevlk~la~~kRGLviiVGaTGSGKSTtmA  145 (375)
T COG5008         116 PEVLKDLALAKRGLVIIVGATGSGKSTTMA  145 (375)
T ss_pred             cHHHHHhhcccCceEEEECCCCCCchhhHH
Confidence            355555444556678889999999999874

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=89.03  E-value=0.23  Score=34.11  Aligned_cols=27  Identities=37%  Similarity=0.338  Sum_probs=17.6

Q ss_pred             HHHHHhhC-CCcEEEEeecCCCCCCceEec
Q psy12526         67 DILDNAFQ-GYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        67 ~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .++...+. |.+  +.--|.||||||.+|.
T Consensus        16 ~~l~~~v~~g~~--i~I~G~tGSGKTTll~   43 (186)
T cd01130          16 AYLWLAVEARKN--ILISGGTGSGKTTLLN   43 (186)
T ss_pred             HHHHHHHhCCCE--EEEECCCCCCHHHHHH
Confidence            34444443 444  5568999999998653

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>smart00242 MYSc Myosin

Probab=88.93  E-value=0.41  Score=39.57  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=19.4

Q ss_pred             hCCCcEEEEeecCCCCCCceEe
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -.+.|-||+.-|++|||||.|.
T Consensus        88 ~~~~~QsIiisGESGaGKTe~~  109 (677)
T smart00242       88 NDKENQSIIISGESGAGKTENT  109 (677)
T ss_pred             hcCCCceEEEecCCCCcchHHH
Confidence            3688999999999999999864

Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=88.82  E-value=0.49  Score=36.72  Aligned_cols=19  Identities=16%  Similarity=0.218  Sum_probs=15.9

Q ss_pred             cEEEEeecCCCCCCceEec
Q psy12526         77 NACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ...|+.+|.||+|||.|+.
T Consensus       174 ~~vi~lvGptGvGKTTT~a  192 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIA  192 (388)
T ss_pred             CeEEEEECCCCCCHHHHHH
Confidence            3578889999999999863

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=88.81  E-value=0.29  Score=38.26  Aligned_cols=37  Identities=22%  Similarity=0.195  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHhhCC---C-cEEEEeecCCCCCCceEe
Q psy12526         58 EKVFDALGRDILDNAFQG---Y-NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        58 ~~v~~~~~~~lv~~~~~G---~-n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...|.....-++.+..+.   . ..-|.--|+||.|||.|+
T Consensus       180 ~~~~~~~l~~~~~~~~~~~~~~~~~vi~LVGPTGVGKTTTl  220 (407)
T COG1419         180 LRYFSEKLRKLLLSLIENLIVEQKRVIALVGPTGVGKTTTL  220 (407)
T ss_pred             hhhHHHHHHHHHHhhccccccccCcEEEEECCCCCcHHHHH
Confidence            445555555555555544   2 333444599999999986

>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins

Probab=88.69  E-value=0.35  Score=36.86  Aligned_cols=36  Identities=28%  Similarity=0.514  Sum_probs=26.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..|+.+|+.++..+..  .+|  ..+|.-|.-|+||||.+
T Consensus         4 ~eQ~~~~~~v~~~~~~--~~~--~~~fv~G~~GtGKs~l~   39 (364)
T PF05970_consen    4 EEQRRVFDTVIEAIEN--EEG--LNFFVTGPAGTGKSFLI   39 (364)
T ss_pred             HHHHHHHHHHHHHHHc--cCC--cEEEEEcCCCCChhHHH
Confidence            5799999988754432  344  45678999999999965

The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].

>smart00487 DEXDc DEAD-like helicases superfamily

Probab=88.55  E-value=0.26  Score=32.29  Aligned_cols=17  Identities=12%  Similarity=0.026  Sum_probs=13.3

Q ss_pred             EEEeecCCCCCCceEec
Q psy12526         79 CIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm~   95 (103)
                      .++-.|.+|||||.++.
T Consensus        26 ~~~i~~~~GsGKT~~~~   42 (201)
T smart00487       26 DVILAAPTGSGKTLAAL   42 (201)
T ss_pred             cEEEECCCCCchhHHHH
Confidence            34568899999999765

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily

Probab=88.55  E-value=0.26  Score=35.15  Aligned_cols=23  Identities=17%  Similarity=0.333  Sum_probs=16.5

Q ss_pred             hCCCcEEEEeecCCCCCCceEec
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ++--...++-+|+.|+|||+.+.
T Consensus        39 ~~~~~~~~~l~G~~G~GKTtl~~   61 (269)
T TIGR03015        39 LSQREGFILITGEVGAGKTTLIR   61 (269)
T ss_pred             HhcCCCEEEEEcCCCCCHHHHHH
Confidence            33334456779999999998654

Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.

>PF06048 DUF927: Domain of unknown function (DUF927); InterPro: IPR009270 This entry is represented by Bacteriophage PT1028, Orf1

Probab=88.35  E-value=0.45  Score=35.10  Aligned_cols=34  Identities=18%  Similarity=0.199  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         61 FDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        61 ~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +...+.||+ ..+.--+..+--||+|++|||.++.
T Consensus       178 ~~afa~pLL-~~l~~~~~~~hl~G~Ss~GKTt~~~  211 (286)
T PF06048_consen  178 CAAFAAPLL-SLLGVEGFGFHLYGQSSSGKTTALQ  211 (286)
T ss_pred             HHHHHHHHH-HHhCCCceEEEEEeCCCCCHHHHHH
Confidence            344456766 4455556778889999999998654

The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.

>PRK12422 chromosomal replication initiation protein; Provisional

Probab=88.00  E-value=0.68  Score=36.44  Aligned_cols=51  Identities=16%  Similarity=0.335  Sum_probs=30.8

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHh--hCC--CcEEEEeecCCCCCCceEec
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNA--FQG--YNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~--~~G--~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ...|+||.-.-        ..+++..|..+ ..+.+..  ..|  +| -++-||.+|+||||-+.
T Consensus       105 ~~~~tFdnFv~--------g~~N~~a~~~a-~~~a~~~~~~~~~~~n-pl~L~G~~G~GKTHLl~  159 (445)
T PRK12422        105 DPLMTFANFLV--------TPENDLPHRIL-QEFTKVSEQGKGFPFN-PIYLFGPEGSGKTHLMQ  159 (445)
T ss_pred             Cccccccceee--------CCcHHHHHHHH-HHHHhccccccCCCCc-eEEEEcCCCCCHHHHHH
Confidence            46688887553        34555555443 3444322  223  45 36779999999999764

>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals

Probab=87.99  E-value=0.44  Score=34.93  Aligned_cols=20  Identities=25%  Similarity=0.253  Sum_probs=16.7

Q ss_pred             CCcEEEEeecCCCCCCceEe
Q psy12526         75 GYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        75 G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .-+.+|.-+|..|||||+-|
T Consensus        18 ~~~~~IgL~G~WGsGKSs~l   37 (325)
T PF07693_consen   18 DDPFVIGLYGEWGSGKSSFL   37 (325)
T ss_pred             CCCeEEEEECCCCCCHHHHH
Confidence            45678888999999999865

Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].

>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A

Probab=87.86  E-value=0.11  Score=34.62  Aligned_cols=27  Identities=30%  Similarity=0.452  Sum_probs=14.2

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ++.....+-...++-.|..|+|||+.+
T Consensus        15 ~l~~~~~~~~~~~ll~G~~G~GKT~ll   41 (185)
T PF13191_consen   15 LLDAAQSGSPRNLLLTGESGSGKTSLL   41 (185)
T ss_dssp             TTGGTSS-----EEE-B-TTSSHHHHH
T ss_pred             HHHHHHcCCCcEEEEECCCCCCHHHHH
Confidence            333334565677899999999999754

>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata

Probab=87.83  E-value=0.71  Score=38.30  Aligned_cols=21  Identities=19%  Similarity=0.251  Sum_probs=18.9

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+.|-||+.-|++|||||.|.
T Consensus        89 ~~~~QsIiisGESGaGKTe~~  109 (677)
T cd01383          89 DEVNQSIIISGESGAGKTETA  109 (677)
T ss_pred             cCCCceEEEecCCCCCcchHH
Confidence            588999999999999999863

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f

>cd01377 MYSc_type_II Myosin motor domain, type II myosins

Probab=87.82  E-value=0.6  Score=38.78  Aligned_cols=21  Identities=19%  Similarity=0.189  Sum_probs=18.9

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      -.+.|-||+.-|++|||||.+
T Consensus        87 ~~~~~QsIiiSGESGAGKTes  107 (693)
T cd01377          87 QDRENQSILITGESGAGKTEN  107 (693)
T ss_pred             hcCCCceEEEEcCCCCCchHH
Confidence            358999999999999999975

Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro

>PHA00729 NTP-binding motif containing protein

Probab=87.78  E-value=0.59  Score=33.80  Aligned_cols=30  Identities=10%  Similarity=0.152  Sum_probs=20.7

Q ss_pred             HHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         65 GRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        65 ~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ++.+++.+..+--..|+-+|..|+||||-.
T Consensus         5 ~k~~~~~l~~~~f~nIlItG~pGvGKT~LA   34 (226)
T PHA00729          5 AKKIVSAYNNNGFVSAVIFGKQGSGKTTYA   34 (226)
T ss_pred             HHHHHHHHhcCCeEEEEEECCCCCCHHHHH
Confidence            344555555433357889999999999843

>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport

Probab=87.73  E-value=0.66  Score=38.46  Aligned_cols=22  Identities=18%  Similarity=0.285  Sum_probs=19.2

Q ss_pred             hCCCcEEEEeecCCCCCCceEe
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -.+-|-||+.-|++|||||.|.
T Consensus        84 ~~~~~QsIiisGESGaGKTe~~  105 (674)
T cd01384          84 NEGKSQSILVSGESGAGKTETT  105 (674)
T ss_pred             HcCCCceEEEECCCCCCchhHH
Confidence            3588999999999999999863

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act

>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A

Probab=87.67  E-value=0.22  Score=34.66  Aligned_cols=26  Identities=15%  Similarity=0.180  Sum_probs=16.5

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..++..-+-.++--|..|+||||+|.
T Consensus        11 ~~~l~~~~~~~~l~G~aGtGKT~~l~   36 (196)
T PF13604_consen   11 RAILTSGDRVSVLQGPAGTGKTTLLK   36 (196)
T ss_dssp             HHHHHCTCSEEEEEESTTSTHHHHHH
T ss_pred             HHHHhcCCeEEEEEECCCCCHHHHHH
Confidence            33443333234458999999999864

>PRK11776 ATP-dependent RNA helicase DbpA; Provisional

Probab=87.41  E-value=0.5  Score=36.72  Aligned_cols=23  Identities=22%  Similarity=0.333  Sum_probs=17.6

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|  ++..++||||||..
T Consensus        35 i~~~l~g~d--vi~~a~TGsGKT~a   57 (460)
T PRK11776         35 LPAILAGKD--VIAQAKTGSGKTAA   57 (460)
T ss_pred             HHHHhcCCC--EEEECCCCCcHHHH
Confidence            445678887  56788999999964

>cd00124 MYSc Myosin motor domain

Probab=87.37  E-value=0.68  Score=38.28  Aligned_cols=34  Identities=21%  Similarity=0.242  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHhh-CCCcEEEEeecCCCCCCceEe
Q psy12526         60 VFDALGRDILDNAF-QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        60 v~~~~~~~lv~~~~-~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ||.-. ..-...++ .+-|-||+.-|++|||||.+.
T Consensus        69 ifavA-~~Ay~~m~~~~~~QsIiisGESGaGKTe~~  103 (679)
T cd00124          69 VFAIA-DRAYRNMLRDRRNQSIIISGESGAGKTENT  103 (679)
T ss_pred             HHHHH-HHHHHHHHhcCCCceEEEecCCCCCchHHH
Confidence            55433 23333433 588999999999999999763

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila

>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins

Probab=87.34  E-value=0.69  Score=38.44  Aligned_cols=21  Identities=24%  Similarity=0.411  Sum_probs=18.8

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+.|-||+.-|++|||||.|.
T Consensus        91 ~~~~QsIiisGESGAGKTet~  111 (692)
T cd01385          91 KKVNQCIVISGESGSGKTEST  111 (692)
T ss_pred             cCCCceEEEecCCCCCchHHH
Confidence            588999999999999999863

Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea

>PRK06921 hypothetical protein; Provisional

Probab=87.32  E-value=0.24  Score=36.30  Aligned_cols=18  Identities=33%  Similarity=0.414  Sum_probs=15.0

Q ss_pred             EEEEeecCCCCCCceEec
Q psy12526         78 ACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm~   95 (103)
                      -.|+-||++|+||||.+.
T Consensus       118 ~~l~l~G~~G~GKThLa~  135 (266)
T PRK06921        118 NSIALLGQPGSGKTHLLT  135 (266)
T ss_pred             CeEEEECCCCCcHHHHHH
Confidence            457789999999999764

>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins

Probab=87.20  E-value=0.79  Score=37.98  Aligned_cols=22  Identities=23%  Similarity=0.342  Sum_probs=19.2

Q ss_pred             hCCCcEEEEeecCCCCCCceEe
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -.+.|-||+.-|++|||||.|.
T Consensus        82 ~~~~~QsIiisGESGaGKTes~  103 (671)
T cd01381          82 REKKNQCIIISGESGAGKTEST  103 (671)
T ss_pred             HcCCCceEEEEcCCCCCeehHH
Confidence            3588999999999999999863

Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr

>PRK13851 type IV secretion system protein VirB11; Provisional

Probab=87.18  E-value=0.42  Score=36.49  Aligned_cols=27  Identities=15%  Similarity=0.267  Sum_probs=18.5

Q ss_pred             HHHHHhh-CCCcEEEEeecCCCCCCceEec
Q psy12526         67 DILDNAF-QGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        67 ~lv~~~~-~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .++..+. .+.|  |+.-|.||||||.+|-
T Consensus       153 ~~l~~~v~~~~n--ilI~G~tGSGKTTll~  180 (344)
T PRK13851        153 AFLHACVVGRLT--MLLCGPTGSGKTTMSK  180 (344)
T ss_pred             HHHHHHHHcCCe--EEEECCCCccHHHHHH
Confidence            4444444 3444  6679999999998764

>cd01378 MYSc_type_I Myosin motor domain, type I myosins

Probab=87.04  E-value=0.79  Score=37.96  Aligned_cols=22  Identities=18%  Similarity=0.363  Sum_probs=19.3

Q ss_pred             hCCCcEEEEeecCCCCCCceEe
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -.+-|-||+.-|++|||||.|.
T Consensus        82 ~~~~~QsIiisGESGaGKTe~~  103 (674)
T cd01378          82 SENENQCVIISGESGAGKTEAA  103 (674)
T ss_pred             HcCCCceEEEEcCCCCCcchHH
Confidence            3588999999999999999863

Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon

>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins

Probab=86.87  E-value=0.69  Score=38.58  Aligned_cols=22  Identities=14%  Similarity=0.155  Sum_probs=19.3

Q ss_pred             hCCCcEEEEeecCCCCCCceEe
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -.+-|-||+.-|++|||||.|.
T Consensus        87 ~~~~~QsIiisGESGaGKTes~  108 (717)
T cd01382          87 VLKMSQSIIVSGESGAGKTENT  108 (717)
T ss_pred             hcCCCCeEEEecCCCCChhHHH
Confidence            3588999999999999999863

Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of

>PRK13900 type IV secretion system ATPase VirB11; Provisional

Probab=86.82  E-value=0.52  Score=35.69  Aligned_cols=26  Identities=23%  Similarity=0.308  Sum_probs=17.9

Q ss_pred             HHHHHhh-CCCcEEEEeecCCCCCCceEe
Q psy12526         67 DILDNAF-QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        67 ~lv~~~~-~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .++..++ .+.|  |+..|.||||||.+|
T Consensus       151 ~~L~~~v~~~~n--ili~G~tgSGKTTll  177 (332)
T PRK13900        151 EFLEHAVISKKN--IIISGGTSTGKTTFT  177 (332)
T ss_pred             HHHHHHHHcCCc--EEEECCCCCCHHHHH
Confidence            3444444 3444  667999999999876

>PHA02244 ATPase-like protein

Probab=86.78  E-value=0.96  Score=35.20  Aligned_cols=36  Identities=17%  Similarity=0.182  Sum_probs=22.7

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        56 ~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+...+......+...+-.+.+..|  +|++|+|||+-
T Consensus       100 g~sp~~~~~~~ri~r~l~~~~PVLL--~GppGtGKTtL  135 (383)
T PHA02244        100 ASNPTFHYETADIAKIVNANIPVFL--KGGAGSGKNHI  135 (383)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCCEEE--ECCCCCCHHHH
Confidence            3334444444455555556777554  89999999974

>cd01380 MYSc_type_V Myosin motor domain, type V myosins

Probab=86.75  E-value=0.76  Score=38.17  Aligned_cols=21  Identities=19%  Similarity=0.230  Sum_probs=18.9

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      -.+.|-||+.-|++|||||.+
T Consensus        82 ~~~~~QsIiiSGESGaGKTes  102 (691)
T cd01380          82 RDEKNQSIIVSGESGAGKTVS  102 (691)
T ss_pred             hcCCCceEEEEcCCCCCchHH
Confidence            368999999999999999975

Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act

>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins

Probab=86.49  E-value=1  Score=29.79  Aligned_cols=16  Identities=25%  Similarity=0.681  Sum_probs=13.1

Q ss_pred             EEEEee-cCCCCCCceE
Q psy12526         78 ACIFAY-GQTGEKTNYL   93 (103)
Q Consensus        78 ~ti~aY-GqtgSGKT~T   93 (103)
                      ..|+++ |.||+||+|+
T Consensus        53 pLVlSfHG~tGtGKn~v   69 (127)
T PF06309_consen   53 PLVLSFHGWTGTGKNFV   69 (127)
T ss_pred             CEEEEeecCCCCcHHHH
Confidence            457777 9999999984

Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor

>PRK06547 hypothetical protein; Provisional

Probab=86.35  E-value=0.84  Score=31.29  Aligned_cols=25  Identities=16%  Similarity=0.194  Sum_probs=16.6

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+..+----|.-.|.+|||||+.
T Consensus         7 ~~~~~~~~~~~i~i~G~~GsGKTt~   31 (172)
T PRK06547          7 AARLCGGGMITVLIDGRSGSGKTTL   31 (172)
T ss_pred             HHHhhcCCCEEEEEECCCCCCHHHH
Confidence            3444444444566679999999974

>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins

Probab=86.24  E-value=0.95  Score=37.54  Aligned_cols=22  Identities=18%  Similarity=0.303  Sum_probs=19.3

Q ss_pred             hCCCcEEEEeecCCCCCCceEe
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -.+.|-||+.-|++|||||.|.
T Consensus        83 ~~~~~QsIiisGESGaGKTe~~  104 (677)
T cd01387          83 DAKQNQCVIISGESGSGKTEAT  104 (677)
T ss_pred             hcCCCceEEEEcCCCCCeehHH
Confidence            3588999999999999999864

In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus

>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]

Probab=86.19  E-value=1.2  Score=37.92  Aligned_cols=37  Identities=14%  Similarity=0.256  Sum_probs=28.8

Q ss_pred             HHHHHHH-HHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         58 EKVFDAL-GRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        58 ~~v~~~~-~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..-|+.. +..+++.+-+|.+=.++++ .||+|||+|.+
T Consensus       166 ~RyyQ~~AI~rv~Eaf~~g~~raLlvM-ATGTGKTrTAi  203 (875)
T COG4096         166 PRYYQIIAIRRVIEAFSKGQNRALLVM-ATGTGKTRTAI  203 (875)
T ss_pred             chHHHHHHHHHHHHHHhcCCceEEEEE-ecCCCcceeHH
Confidence            3344443 4788899999999977777 89999999964

>PTZ00424 helicase 45; Provisional

Probab=86.07  E-value=0.63  Score=35.17  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=19.3

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..+..+++|.|..  ..++||||||.+.
T Consensus        57 ~ai~~i~~~~d~i--i~apTGsGKT~~~   82 (401)
T PTZ00424         57 RGIKPILDGYDTI--GQAQSGTGKTATF   82 (401)
T ss_pred             HHHHHHhCCCCEE--EECCCCChHHHHH
Confidence            3455678888854  5789999999653

>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family

Probab=85.58  E-value=0.65  Score=38.26  Aligned_cols=30  Identities=7%  Similarity=0.152  Sum_probs=19.8

Q ss_pred             HHHHHHHhhC-----CCcEEEEeecCCCCCCceEec
Q psy12526         65 GRDILDNAFQ-----GYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        65 ~~~lv~~~~~-----G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +..+++.+..     |.+..| -.-.||||||+||.
T Consensus       247 v~~~~~~~~~~~~~~~~~~gl-i~~~TGsGKT~t~~  281 (667)
T TIGR00348       247 VKKIVESITRKTWGKDERGGL-IWHTQGSGKTLTML  281 (667)
T ss_pred             HHHHHHHHHhcccCCCCceeE-EEEecCCCccHHHH
Confidence            3455666555     344444 35599999999996

Members of this family are assumed to differ from each other in DNA site specificity.

>TIGR03499 FlhF flagellar biosynthetic protein FlhF

Probab=85.53  E-value=0.29  Score=36.09  Aligned_cols=17  Identities=29%  Similarity=0.257  Sum_probs=13.5

Q ss_pred             EEEeecCCCCCCceEec
Q psy12526         79 CIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm~   95 (103)
                      .|.-.|.||+|||+|+.
T Consensus       196 vi~~vGptGvGKTTt~~  212 (282)
T TIGR03499       196 VIALVGPTGVGKTTTLA  212 (282)
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            45556999999999864

>PHA02653 RNA helicase NPH-II; Provisional

Probab=85.34  E-value=0.84  Score=37.87  Aligned_cols=33  Identities=18%  Similarity=0.093  Sum_probs=22.1

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +-|.++=+.    ++..+++|.+  |+..|+||||||.-
T Consensus       163 ~~~~~iQ~q----il~~i~~gkd--vIv~A~TGSGKTtq  195 (675)
T PHA02653        163 SLQPDVQLK----IFEAWISRKP--VVLTGGTGVGKTSQ  195 (675)
T ss_pred             chhHHHHHH----HHHHHHhCCC--EEEECCCCCCchhH
Confidence            445544443    3455667765  56899999999964

>PRK13764 ATPase; Provisional

Probab=85.23  E-value=0.38  Score=39.40  Aligned_cols=18  Identities=17%  Similarity=0.254  Sum_probs=15.2

Q ss_pred             EEEEeecCCCCCCceEec
Q psy12526         78 ACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..|+..|.||||||+++.
T Consensus       258 ~~ILIsG~TGSGKTTll~  275 (602)
T PRK13764        258 EGILIAGAPGAGKSTFAQ  275 (602)
T ss_pred             CEEEEECCCCCCHHHHHH
Confidence            348899999999999874

>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli []

Probab=84.95  E-value=0.6  Score=33.21  Aligned_cols=17  Identities=24%  Similarity=0.528  Sum_probs=11.8

Q ss_pred             cEEEEeecCCCCCCceE
Q psy12526         77 NACIFAYGQTGEKTNYL   93 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~T   93 (103)
                      +-.+++.|..|||||+.
T Consensus        19 ~~~v~~~G~AGTGKT~L   35 (205)
T PF02562_consen   19 NDLVIVNGPAGTGKTFL   35 (205)
T ss_dssp             -SEEEEE--TTSSTTHH
T ss_pred             CCeEEEECCCCCcHHHH
Confidence            33688999999999984

; GO: 0005524 ATP binding; PDB: 3B85_A.

>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA

Probab=84.80  E-value=0.24  Score=35.59  Aligned_cols=20  Identities=10%  Similarity=0.071  Sum_probs=14.9

Q ss_pred             CcEEEEeecCCCCCCceEec
Q psy12526         76 YNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        76 ~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+..++.-|-.|||||+||.
T Consensus        12 ~~~~~lV~a~AGSGKT~~l~   31 (315)
T PF00580_consen   12 TEGPLLVNAGAGSGKTTTLL   31 (315)
T ss_dssp             -SSEEEEEE-TTSSHHHHHH
T ss_pred             CCCCEEEEeCCCCCchHHHH
Confidence            45566777889999999986

THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....

>PRK10590 ATP-dependent RNA helicase RhlE; Provisional

Probab=84.69  E-value=0.88  Score=35.51  Aligned_cols=23  Identities=22%  Similarity=0.329  Sum_probs=18.0

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|  +++-.+||||||.+
T Consensus        32 i~~il~g~d--vlv~apTGsGKTla   54 (456)
T PRK10590         32 IPAVLEGRD--LMASAQTGTGKTAG   54 (456)
T ss_pred             HHHHhCCCC--EEEECCCCCcHHHH
Confidence            455678887  56788999999975

>PRK11192 ATP-dependent RNA helicase SrmB; Provisional

Probab=84.57  E-value=0.82  Score=35.18  Aligned_cols=23  Identities=17%  Similarity=0.329  Sum_probs=18.2

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|-|  +++.++||+|||..
T Consensus        32 i~~~~~g~d--~l~~apTGsGKT~~   54 (434)
T PRK11192         32 IPPALDGRD--VLGSAPTGTGKTAA   54 (434)
T ss_pred             HHHHhCCCC--EEEECCCCChHHHH
Confidence            455677877  77889999999975

>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional

Probab=84.53  E-value=0.53  Score=41.15  Aligned_cols=30  Identities=10%  Similarity=0.051  Sum_probs=20.2

Q ss_pred             HHHHHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526         66 RDILDNAFQGYNACIFAYGQTGEKTNYLLNG   96 (103)
Q Consensus        66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G   96 (103)
                      ..+++.+.+|....+ ..-.||||||+||..
T Consensus       423 ~ai~~a~~~g~r~~L-l~maTGSGKT~tai~  452 (1123)
T PRK11448        423 QAVEKAIVEGQREIL-LAMATGTGKTRTAIA  452 (1123)
T ss_pred             HHHHHHHHhccCCeE-EEeCCCCCHHHHHHH
Confidence            344455556665444 458999999999864

>cd00268 DEADc DEAD-box helicases

Probab=84.52  E-value=0.99  Score=30.69  Aligned_cols=22  Identities=18%  Similarity=0.273  Sum_probs=16.3

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceE
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      ..+++|.|  ++..++||+|||.+
T Consensus        31 ~~~~~~~~--~li~~~TG~GKT~~   52 (203)
T cd00268          31 PPLLSGRD--VIGQAQTGSGKTAA   52 (203)
T ss_pred             HHHhcCCc--EEEECCCCCcHHHH
Confidence            44455777  46689999999975

A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.

>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []

Probab=84.49  E-value=0.36  Score=33.43  Aligned_cols=19  Identities=26%  Similarity=0.267  Sum_probs=13.8

Q ss_pred             CcEEEEeecCCCCCCceEe
Q psy12526         76 YNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        76 ~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .-..++..|+.|||||+.+
T Consensus        14 ~P~~~i~aG~~GsGKSt~~   32 (199)
T PF06414_consen   14 KPTLIIIAGQPGSGKSTLA   32 (199)
T ss_dssp             S-EEEEEES-TTSTTHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHH
Confidence            3456888999999998754

It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.

>PRK04837 ATP-dependent RNA helicase RhlB; Provisional

Probab=84.20  E-value=0.83  Score=35.12  Aligned_cols=23  Identities=22%  Similarity=0.242  Sum_probs=17.4

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|.  ++-++||||||.+
T Consensus        39 ip~il~g~dv--i~~ApTGsGKTla   61 (423)
T PRK04837         39 LPLTLAGRDV--AGQAQTGTGKTMA   61 (423)
T ss_pred             HHHHhCCCcE--EEECCCCchHHHH
Confidence            4456888874  5567999999964

>KOG0989|consensus

Probab=84.09  E-value=0.94  Score=34.59  Aligned_cols=29  Identities=21%  Similarity=0.246  Sum_probs=18.6

Q ss_pred             HHHHHhhCC-CcEEEEeecCCCCCCceEec
Q psy12526         67 DILDNAFQG-YNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        67 ~lv~~~~~G-~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .++..++.+ .---.+-||+.|+|||.|..
T Consensus        46 ~~L~~a~~~~~lp~~LFyGPpGTGKTStal   75 (346)
T KOG0989|consen   46 QVLKNALLRRILPHYLFYGPPGTGKTSTAL   75 (346)
T ss_pred             HHHHHHHhhcCCceEEeeCCCCCcHhHHHH
Confidence            334444443 22335779999999998853

>PRK00440 rfc replication factor C small subunit; Reviewed

Probab=83.59  E-value=0.92  Score=33.01  Aligned_cols=21  Identities=10%  Similarity=0.074  Sum_probs=15.5

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+...-++-||+.|+|||+.+
T Consensus        35 ~~~~~~~ll~G~~G~GKt~~~   55 (319)
T PRK00440         35 EKNMPHLLFAGPPGTGKTTAA   55 (319)
T ss_pred             CCCCCeEEEECCCCCCHHHHH
Confidence            344334678999999999754

>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]

Probab=83.45  E-value=0.64  Score=35.75  Aligned_cols=27  Identities=30%  Similarity=0.288  Sum_probs=19.3

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .++..+.++. +.|+-.|=||||||.++
T Consensus       164 ~~L~~av~~r-~NILisGGTGSGKTTlL  190 (355)
T COG4962         164 KFLRRAVGIR-CNILISGGTGSGKTTLL  190 (355)
T ss_pred             HHHHHHHhhc-eeEEEeCCCCCCHHHHH
Confidence            3444455544 66888999999999864

>PRK04328 hypothetical protein; Provisional

Probab=83.21  E-value=1.1  Score=32.35  Aligned_cols=26  Identities=15%  Similarity=0.258  Sum_probs=20.8

Q ss_pred             HHHHHhhCC---CcEEEEeecCCCCCCce
Q psy12526         67 DILDNAFQG---YNACIFAYGQTGEKTNY   92 (103)
Q Consensus        67 ~lv~~~~~G---~n~ti~aYGqtgSGKT~   92 (103)
                      +-++.++.|   ....++-+|..|+|||-
T Consensus        10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~   38 (249)
T PRK04328         10 PGMDEILYGGIPERNVVLLSGGPGTGKSI   38 (249)
T ss_pred             hhHHHHhcCCCcCCcEEEEEcCCCCCHHH
Confidence            456777775   47888999999999964

>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A

Probab=82.99  E-value=0.48  Score=32.35  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=15.2

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..++.--. ..+..|+-|+|||+|+.
T Consensus        11 ~~~~~~~~-~~~i~GpPGTGKT~~l~   35 (236)
T PF13086_consen   11 QSALSSNG-ITLIQGPPGTGKTTTLA   35 (236)
T ss_dssp             HHHCTSSE--EEEE-STTSSHHHHHH
T ss_pred             HHHHcCCC-CEEEECCCCCChHHHHH
Confidence            44443333 34568999999998764

>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins

Probab=82.94  E-value=1.4  Score=37.21  Aligned_cols=21  Identities=14%  Similarity=0.195  Sum_probs=18.9

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+.|-||+.-|++|||||.|.
T Consensus        83 ~~~~QsIiiSGESGAGKTe~t  103 (767)
T cd01386          83 TRRDQSIIFLGRSGAGKTTSC  103 (767)
T ss_pred             cCCCceEEEecCCCCCcHHHH
Confidence            588999999999999999763

This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the

>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN

Probab=82.83  E-value=1.5  Score=31.80  Aligned_cols=29  Identities=21%  Similarity=0.245  Sum_probs=19.5

Q ss_pred             HHHHHHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         63 ALGRDILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        63 ~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+.+.++..+..|.+..  -+|.+|+|||..
T Consensus         9 ~l~~~~l~~l~~g~~vL--L~G~~GtGKT~l   37 (262)
T TIGR02640         9 RVTSRALRYLKSGYPVH--LRGPAGTGKTTL   37 (262)
T ss_pred             HHHHHHHHHHhcCCeEE--EEcCCCCCHHHH
Confidence            33344555666676654  489999999863

Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).

>COG1201 Lhr Lhr-like helicases [General function prediction only]

Probab=82.46  E-value=1.3  Score=37.65  Aligned_cols=23  Identities=26%  Similarity=0.302  Sum_probs=18.3

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+.+|.|+.|.|  +||||||-+
T Consensus        31 ~~~i~~G~nvLiiA--PTGsGKTeA   53 (814)
T COG1201          31 IPEIHSGENVLIIA--PTGSGKTEA   53 (814)
T ss_pred             HHHHhCCCceEEEc--CCCCChHHH
Confidence            45568999987754  999999864

>PRK01297 ATP-dependent RNA helicase RhlB; Provisional

Probab=82.39  E-value=1.1  Score=35.09  Aligned_cols=25  Identities=24%  Similarity=0.255  Sum_probs=19.1

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      ..+..+++|.|..+  -.+||||||..
T Consensus       116 ~ai~~~~~G~dvi~--~apTGSGKTla  140 (475)
T PRK01297        116 QVLGYTLAGHDAIG--RAQTGTGKTAA  140 (475)
T ss_pred             HHHHHHhCCCCEEE--ECCCCChHHHH
Confidence            45667889988654  55999999954

>PRK11634 ATP-dependent RNA helicase DeaD; Provisional

Probab=82.35  E-value=1.1  Score=36.74  Aligned_cols=23  Identities=17%  Similarity=0.375  Sum_probs=17.8

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.+  |++.++||||||.+
T Consensus        37 i~~ll~g~d--vl~~ApTGsGKT~a   59 (629)
T PRK11634         37 IPHLLNGRD--VLGMAQTGSGKTAA   59 (629)
T ss_pred             HHHHHcCCC--EEEEcCCCCcHHHH
Confidence            455677876  66788999999965

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=82.19  E-value=0.48  Score=36.62  Aligned_cols=18  Identities=17%  Similarity=0.115  Sum_probs=14.7

Q ss_pred             EEEEeecCCCCCCceEec
Q psy12526         78 ACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..+.-.|.||+|||+|+.
T Consensus       138 ~ii~lvGptGvGKTTtia  155 (374)
T PRK14722        138 GVFALMGPTGVGKTTTTA  155 (374)
T ss_pred             cEEEEECCCCCCHHHHHH
Confidence            456678999999999864

>PRK10536 hypothetical protein; Provisional

Probab=82.07  E-value=0.95  Score=33.48  Aligned_cols=17  Identities=29%  Similarity=0.522  Sum_probs=14.4

Q ss_pred             EEEEeecCCCCCCceEe
Q psy12526         78 ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm   94 (103)
                      .-++..|..|+||||..
T Consensus        75 ~lV~i~G~aGTGKT~La   91 (262)
T PRK10536         75 QLIFATGEAGCGKTWIS   91 (262)
T ss_pred             CeEEEECCCCCCHHHHH
Confidence            37889999999999853

>TIGR02237 recomb_radB DNA repair and recombination protein RadB

Probab=82.01  E-value=0.98  Score=31.13  Aligned_cols=17  Identities=18%  Similarity=0.352  Sum_probs=14.2

Q ss_pred             cEEEEeecCCCCCCceE
Q psy12526         77 NACIFAYGQTGEKTNYL   93 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~T   93 (103)
                      ...+.-+|.+|||||.-
T Consensus        12 g~i~~i~G~~GsGKT~l   28 (209)
T TIGR02237        12 GTITQIYGPPGSGKTNI   28 (209)
T ss_pred             CeEEEEECCCCCCHHHH
Confidence            56778899999999853

This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).

>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B

Probab=81.96  E-value=1.3  Score=30.98  Aligned_cols=27  Identities=22%  Similarity=0.356  Sum_probs=20.4

Q ss_pred             HHHHHhhCC---CcEEEEeecCCCCCCceE
Q psy12526         67 DILDNAFQG---YNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        67 ~lv~~~~~G---~n~ti~aYGqtgSGKT~T   93 (103)
                      +-++.++.|   ....+.-+|..|||||.-
T Consensus         6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l   35 (235)
T cd01123           6 KALDELLGGGIETGSITEIFGEFGSGKTQL   35 (235)
T ss_pred             hhhHhhccCCCCCCeEEEEECCCCCCHHHH
Confidence            446777775   356778899999999864

This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .

>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria

Probab=81.73  E-value=1.4  Score=34.61  Aligned_cols=38  Identities=32%  Similarity=0.558  Sum_probs=28.4

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        56 ~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..+..-+.+... ++.+-+|-...-|..|.-||||||.+
T Consensus        29 Gr~~e~~~l~~~-l~~v~~G~s~~kfi~G~YGsGKTf~l   66 (416)
T PF10923_consen   29 GREREIEALDRD-LDRVADGGSSFKFIRGEYGSGKTFFL   66 (416)
T ss_pred             chHHHHHHHHHH-HHHHhCCCCeEEEEEeCCCCcHHHHH
Confidence            444444444443 57788998888999999999999964

Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.

>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit

Probab=81.34  E-value=1.6  Score=31.79  Aligned_cols=41  Identities=27%  Similarity=0.306  Sum_probs=25.2

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhC--CCcEEEEeecCCCCCCceEe
Q psy12526         53 NFASQEKVFDALGRDILDNAFQ--GYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        53 ~~~~q~~v~~~~~~~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ....|+++-+.+. .++.....  +....++-||+.|+|||+..
T Consensus         5 ~~iG~~~~~~~l~-~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la   47 (305)
T TIGR00635         5 EFIGQEKVKEQLQ-LFIEAAKMRQEALDHLLLYGPPGLGKTTLA   47 (305)
T ss_pred             HHcCHHHHHHHHH-HHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence            4567777776643 34443222  22223667999999999854

RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.

>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional

Probab=81.24  E-value=1.8  Score=34.53  Aligned_cols=29  Identities=17%  Similarity=0.166  Sum_probs=19.8

Q ss_pred             HHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         64 LGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        64 ~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ....++..+..+-|..+  ||..|+|||+..
T Consensus       183 ~le~l~~~L~~~~~iil--~GppGtGKT~lA  211 (459)
T PRK11331        183 TIETILKRLTIKKNIIL--QGPPGVGKTFVA  211 (459)
T ss_pred             HHHHHHHHHhcCCCEEE--ECCCCCCHHHHH
Confidence            33455555556666544  999999999754

>PLN03025 replication factor C subunit; Provisional

Probab=81.22  E-value=1.3  Score=32.88  Aligned_cols=17  Identities=12%  Similarity=0.143  Sum_probs=13.6

Q ss_pred             EEEeecCCCCCCceEec
Q psy12526         79 CIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm~   95 (103)
                      -++-||+.|+|||++..
T Consensus        36 ~lll~Gp~G~GKTtla~   52 (319)
T PLN03025         36 NLILSGPPGTGKTTSIL   52 (319)
T ss_pred             eEEEECCCCCCHHHHHH
Confidence            35669999999998654

>TIGR02881 spore_V_K stage V sporulation protein K

Probab=81.07  E-value=0.56  Score=33.85  Aligned_cols=17  Identities=12%  Similarity=0.173  Sum_probs=13.9

Q ss_pred             EEEEeecCCCCCCceEe
Q psy12526         78 ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm   94 (103)
                      ..++-||+.|+|||++.
T Consensus        43 ~~vll~GppGtGKTtlA   59 (261)
T TIGR02881        43 LHMIFKGNPGTGKTTVA   59 (261)
T ss_pred             ceEEEEcCCCCCHHHHH
Confidence            44677999999999864

Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.

>cd01379 MYSc_type_III Myosin motor domain, type III myosins

Probab=81.03  E-value=1.6  Score=36.11  Aligned_cols=21  Identities=19%  Similarity=0.351  Sum_probs=18.5

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+.|-||+.-|++|||||.|+
T Consensus        83 ~~~~QsIiisGESGsGKTet~  103 (653)
T cd01379          83 YNQDQCIVISGESGSGKTESA  103 (653)
T ss_pred             cCCCceEEEecCCCCCchHHH
Confidence            478899999999999999864

Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the

>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]

Probab=81.00  E-value=0.61  Score=35.21  Aligned_cols=22  Identities=14%  Similarity=0.150  Sum_probs=17.0

Q ss_pred             hhCCCcEEEEeecCCCCCCceE
Q psy12526         72 AFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        72 ~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +-+.---.|+-||.+|+|||++
T Consensus       146 Fg~WAPknVLFyGppGTGKTm~  167 (368)
T COG1223         146 FGDWAPKNVLFYGPPGTGKTMM  167 (368)
T ss_pred             hcccCcceeEEECCCCccHHHH
Confidence            4455566788999999999864

>KOG0335|consensus

Probab=80.84  E-value=0.79  Score=36.63  Aligned_cols=21  Identities=24%  Similarity=0.273  Sum_probs=15.5

Q ss_pred             hCCCcEEEEeecCCCCCCceEec
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+|..  ++|.+|||||||+--+
T Consensus       109 ~~Grd--l~acAqTGsGKT~aFL  129 (482)
T KOG0335|consen  109 SGGRD--LMACAQTGSGKTAAFL  129 (482)
T ss_pred             ecCCc--eEEEccCCCcchHHHH
Confidence            44444  4899999999998543

>KOG2543|consensus

Probab=80.57  E-value=0.54  Score=36.86  Aligned_cols=18  Identities=28%  Similarity=0.704  Sum_probs=14.6

Q ss_pred             cEEEEeecCCCCCCceEe
Q psy12526         77 NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm   94 (103)
                      -.-|+-||.+||||||++
T Consensus        30 PS~~~iyG~sgTGKT~~~   47 (438)
T KOG2543|consen   30 PSIVHIYGHSGTGKTYLV   47 (438)
T ss_pred             ceeEEEeccCCCchhHHH
Confidence            344588999999999975

>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed

Probab=80.02  E-value=3.3  Score=29.23  Aligned_cols=36  Identities=19%  Similarity=0.148  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceE
Q psy12526         58 EKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        58 ~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~T   93 (103)
                      +.+|..++..|....-. +..-.|---|.+|||||+.
T Consensus        13 ~~~~~~l~~~~~~~~~~~~~~~iigi~G~~GsGKTTl   49 (229)
T PRK09270         13 EAVHKPLLRRLAALQAEPQRRTIVGIAGPPGAGKSTL   49 (229)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCEEEEEECCCCCCHHHH
Confidence            45666666555444433 3333444459999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	103
3gbj_A	354	Crystal Structure Of The Motor Domain Of Kinesin Ki		2e-17
1i6i_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		4e-13
1ia0_K	394	Kif1a Head-Microtubule Complex Structure In Atp-For		4e-13
1vfv_A	366	Crystal Structure Of The Kif1a Motor Domain Complex		5e-13
1i5s_A	367	Crystal Structure Of The Kif1a Motor Domain Complex		5e-13
2owm_A	443	Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3		1e-12
3b6u_A	372	Crystal Structure Of The Motor Domain Of Human Kine		4e-07
2ncd_A	420	Ncd (Non-Claret Disjunctional) Dimer From D. Melano		7e-07
1n6m_A	409	Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRY		8e-07
3u06_A	412	Crystal Structure Of The Kinesin-14 Ncdg347d Length		8e-07
1cz7_A	406	The Crystal Structure Of A Minus-End Directed Micro		8e-07
4atx_C	340	Rigor Kinesin Motor Domain With An Ordered Neck-Lin		1e-06
3l1c_A	383	Kinesin-14 Protein Ncd, T436s Mutant Length = 383		2e-06
3b6v_A	395	Crystal Structure Of The Motor Domain Of Human Kine		2e-06
2y5w_A	365	Crystal Structure Of Drosophila Melanogaster Kinesi		3e-06
1t5c_A	349	Crystal Structure Of The Motor Domain Of Human Kine		3e-06
4aqv_C	373	Model Of Human Kinesin-5 Motor Domain (3hqd) And Ma		3e-06
2kin_A	238	Kinesin (Monomeric) From Rattus Norvegicus Length =		4e-06
2vvg_A	350	Crystal Structure Of The G.Intestinalis Kinesin 2 G		6e-06
1mkj_A	349	Human Kinesin Motor Domain With Docked Neck Linker		6e-06
4a14_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		7e-06
2xt3_A	344	Human Kif7, A Kinesin Involved In Hedgehog Signalli		7e-06
1bg2_A	325	Human Ubiquitous Kinesin Motor Domain Length = 325		7e-06
1f9u_A	347	Crystal Structures Of Mutants Reveal A Signalling P		8e-06
1f9t_A	358	Crystal Structures Of Kinesin Mutants Reveal A Sign		8e-06
1f9v_A	347	Crystal Structures Of Mutants Reveal A Signalling P		8e-06
3kar_A	346	The Motor Domain Of Kinesin-Like Protein Kar3, A Sa		8e-06
1f9w_A	347	Crystal Structures Of Mutants Reveal A Signalling P		9e-06
2rep_A	376	Crystal Structure Of The Motor Domain Of Human Kine		9e-06
4gkr_A	371	Structure Of The C-Terminal Motor Domain Of Kar3 Fr		1e-05
2h58_A	330	Crystal Structure Of The Kifc3 Motor Domain In Comp		1e-05
1x88_A	359	Human Eg5 Motor Domain Bound To Mg-Adp And Monastro		2e-05
4a1z_A	368	Eg5-1 Length = 368		2e-05
3zcw_A	348	Eg5 - New Allosteric Binding Site Length = 348		2e-05
3hqd_A	369	Human Kinesin Eg5 Motor Domain In Complex With Ampp		2e-05
3t0q_A	349	Motor Domain Structure Of The Kar3-Like Kinesin Fro		2e-05
1q0b_A	367	Crystal Structure Of The Motor Protein Ksp In Compl		2e-05
4a28_A	368	Eg5-2 Length = 368		2e-05
1ii6_A	368	Crystal Structure Of The Mitotic Kinesin Eg5 In Com		2e-05
4ap0_A	370	The Mitotic Kinesin Eg5 In Complex With Mg-Adp And		2e-05
3nwn_A	359	Crystal Structure Of The Human Kif9 Motor Domain In		3e-05
2gry_A	420	Crystal Structure Of The Human Kif2 Motor Domain In		7e-05
3h4s_A	386	Structure Of The Complex Of A Mitotic Kinesin With		1e-04
4etp_A	403	C-Terminal Motor And Motor Homology Domain Of Kar3v		1e-04
1sdm_A	369	Crystal Structure Of Kinesin-Like Calmodulin Bindin		2e-04
3dc4_A	344	Crystal Structure Of The Drosophila Kinesin Family		2e-04
3pxn_A	344	Crystal Structure Of The Drosophila Kinesin Family		3e-04
1goj_A	355	Structure Of A Fast Kinesin: Implications For Atpas		6e-04

>pdb|3GBJ|A Chain A, Crystal Structure Of The Motor Domain Of Kinesin Kif13b Bound With Adp Length = 354

Iteration: 1
 Score = 84.0 bits (206), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 37/68 (54%), Positives = 47/68 (69%), Gaps = 1/68 (1%)
Query: 35  PKTFAFDHCFYSLDPNLP-NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
           PK FA+DHCF+S+D ++   +A Q+ VF  LG +IL NAF GYNACIFAYGQTG   +Y 
Sbjct: 50  PKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSGKSYT 109
Query: 94  LNGNGPFP 101
           + G    P
Sbjct: 110 MMGTADQP 117

>pdb|1I6I|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppcp Length = 366

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 35  PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
           PK+F+FD+ ++S   P   N+ASQ++V+  +G ++L +AF+GYN CIFAYGQTG   +Y 
Sbjct: 47  PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106
Query: 94  LNG 96
           + G
Sbjct: 107 MMG 109

>pdb|1IA0|K Chain K, Kif1a Head-Microtubule Complex Structure In Atp-Form Length = 394

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 35  PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
           PK+F+FD+ ++S   P   N+ASQ++V+  +G ++L +AF+GYN CIFAYGQTG   +Y 
Sbjct: 63  PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 122
Query: 94  LNG 96
           + G
Sbjct: 123 MMG 125

>pdb|1VFV|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Amppnp Length = 366

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 35  PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
           PK+F+FD+ ++S   P   N+ASQ++V+  +G ++L +AF+GYN CIFAYGQTG   +Y 
Sbjct: 47  PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106
Query: 94  LNG 96
           + G
Sbjct: 107 MMG 109

>pdb|1I5S|A Chain A, Crystal Structure Of The Kif1a Motor Domain Complexed With Mg-Adp Length = 367

Iteration: 1
 Score = 69.3 bits (168), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 30/63 (47%), Positives = 46/63 (73%), Gaps = 1/63 (1%)
Query: 35  PKTFAFDHCFYS-LDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
           PK+F+FD+ ++S   P   N+ASQ++V+  +G ++L +AF+GYN CIFAYGQTG   +Y 
Sbjct: 47  PKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYT 106
Query: 94  LNG 96
           + G
Sbjct: 107 MMG 109

>pdb|2OWM|A Chain A, Motor Domain Of Neurospora Crassa Kinesin-3 (Nckin3) Length = 443

Iteration: 1
 Score = 68.2 bits (165), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 36  KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
           K+F FD  F+S +    ++A+QE V+D+LG + LD+ F+GY+ CIFAYGQTG   +Y + 
Sbjct: 96  KSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMM 155
Query: 96  GNGPFP 101
           G    P
Sbjct: 156 GTPDQP 161

>pdb|3B6U|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3b In Complex With Adp Length = 372

Iteration: 1
 Score = 49.7 bits (117), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 20  QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
           Q +     G +H + PKTF FD  +   D N    A Q +++D   R ++D+  QG+N  
Sbjct: 53  QVSVKNPKGTAH-EMPKTFTFDAVY---DWN----AKQFELYDETFRPLVDSVLQGFNGT 104
Query: 80  IFAYGQTGEKTNYLLNG 96
           IFAYGQTG    Y + G
Sbjct: 105 IFAYGQTGTGKTYTMEG 121

>pdb|2NCD|A Chain A, Ncd (Non-Claret Disjunctional) Dimer From D. Melanogaster Length = 420

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36  KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
           + F+FD  F+ L       +SQ  +F+ +   ++ +A  GYN CIFAYGQTG    Y ++
Sbjct: 114 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 165
Query: 96  G 96
           G
Sbjct: 166 G 166

>pdb|1N6M|A Chain A, Rotation Of The StalkNECK AND ONE HEAD IN A NEW CRYSTAL Structure Of The Kinesin Motor Protein, Ncd Length = 409

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36  KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
           + F+FD  F+ L       +SQ  +F+ +   ++ +A  GYN CIFAYGQTG    Y ++
Sbjct: 103 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 154
Query: 96  G 96
           G
Sbjct: 155 G 155

>pdb|3U06|A Chain A, Crystal Structure Of The Kinesin-14 Ncdg347d Length = 412

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36  KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
           + F+FD  F+ L       +SQ  +F+ +   ++ +A  GYN CIFAYGQTG    Y ++
Sbjct: 106 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 157
Query: 96  G 96
           G
Sbjct: 158 G 158

>pdb|1CZ7|A Chain A, The Crystal Structure Of A Minus-End Directed Microtubule Motor Protein Ncd Reveals Variable Dimer Conformations Length = 406

Iteration: 1
 Score = 48.9 bits (115), Expect = 8e-07,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36  KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
           + F+FD  F+ L       +SQ  +F+ +   ++ +A  GYN CIFAYGQTG    Y ++
Sbjct: 100 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYTMD 151
Query: 96  G 96
           G
Sbjct: 152 G 152

>pdb|4ATX|C Chain C, Rigor Kinesin Motor Domain With An Ordered Neck-Linker, Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em Map Of Doublecortin-Microtubules Decorated With Kinesin Length = 340

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 7/61 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
          K +AFD  F S         SQE+V++   + I+ +  +GYN  IFAYGQT    N+ + 
Sbjct: 44 KPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKNHTME 96
Query: 96 G 96
          G
Sbjct: 97 G 97

>pdb|3L1C|A Chain A, Kinesin-14 Protein Ncd, T436s Mutant Length = 383

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 8/61 (13%)
Query: 36  KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
           + F+FD  F+ L       +SQ  +F+ +   ++ +A  GYN CIFAYGQ+G    Y ++
Sbjct: 103 QIFSFDQVFHPL-------SSQSDIFEMVS-PLIQSALDGYNICIFAYGQSGSGKTYTMD 154
Query: 96  G 96
           G
Sbjct: 155 G 155

>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member 3c In Complex With Adp Length = 395

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 33/62 (53%), Gaps = 7/62 (11%)
Query: 35  PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL 94
           PKTF FD  + +        + Q  ++D   R ++D+  QG+N  +FAYGQTG    Y +
Sbjct: 67  PKTFTFDAVYDA-------SSKQADLYDETVRPLIDSVLQGFNGTVFAYGQTGTGKTYTM 119
Query: 95  NG 96
            G
Sbjct: 120 QG 121

>pdb|2Y5W|A Chain A, Crystal Structure Of Drosophila Melanogaster Kinesin-1 Motor Domain Dimer Length = 365

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 36  KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
           K + FD  F    PN    ASQEKV++   + I+ +   GYN  IFAYGQT     + + 
Sbjct: 51  KVYLFDKVF---KPN----ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTME 103
Query: 96  G 96
           G
Sbjct: 104 G 104

>pdb|1T5C|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinetochore Protein Cenp-E Length = 349

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 7/62 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
          K+F FD  F+  +       + + V++ +   I+D+A QGYN  IFAYGQT     Y + 
Sbjct: 44 KSFNFDRVFHGNE-------TTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMM 96
Query: 96 GN 97
          G+
Sbjct: 97 GS 98

>pdb|4AQV|C Chain C, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain In The Ampppnp State. Length = 373

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 29/80 (36%), Positives = 39/80 (48%), Gaps = 8/80 (10%)
Query: 17  VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
           VRK+ +  TG G +     KT+ FD  F +          Q  V+ ++   ILD    GY
Sbjct: 46  VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVAPILDEVIMGY 97
Query: 77  NACIFAYGQTGEKTNYLLNG 96
           NA IFAYGQTG    + + G
Sbjct: 98  NATIFAYGQTGTGKTFTMEG 117

>pdb|2KIN|A Chain A, Kinesin (Monomeric) From Rattus Norvegicus Length = 238

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 20/52 (38%), Positives = 30/52 (57%)
Query: 45 YSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96
          Y  D  LP   +QE+V++A  + I+ +  +GYN  IFAYGQT     + + G
Sbjct: 46 YVFDRVLPPNTTQEQVYNACAKQIVKDVLEGYNGTIFAYGQTSSGKTHTMEG 97

>pdb|2VVG|A Chain A, Crystal Structure Of The G.Intestinalis Kinesin 2 Gikin2a Motor Domain Length = 350

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 33  KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY 92
           K P+TF FD  +   D    N+     +F A  + ++D   +G+N+ IFAYGQTG    +
Sbjct: 53  KVPRTFTFDAVY---DQTSCNYG----IFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTW 105
Query: 93  LLNGNGPFP 101
            + GN   P
Sbjct: 106 TMGGNKEEP 114

>pdb|1MKJ|A Chain A, Human Kinesin Motor Domain With Docked Neck Linker Length = 349

Iteration: 1
 Score = 45.8 bits (107), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
          K +AFD  F S         SQE+V++   + I+ +  +GYN  IFAYGQT     + + 
Sbjct: 44 KPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Query: 96 G 96
          G
Sbjct: 97 G 97

>pdb|4A14|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 26  GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
           G GR  L   + F F H   + D      A QE V+ A  + +L+  F+G+NA +FAYGQ
Sbjct: 40  GLGRVTLGRDRHFGF-HVVLAED------AGQEAVYQACVQPLLEAFFEGFNATVFAYGQ 92
Query: 86  TGEKTNYLL 94
           TG    Y +
Sbjct: 93  TGSGKTYTM 101

>pdb|2XT3|A Chain A, Human Kif7, A Kinesin Involved In Hedgehog Signalling Length = 344

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 26  GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
           G GR  L   + F F H   + D      A QE V+ A  + +L+  F+G+NA +FAYGQ
Sbjct: 40  GLGRVTLGRDRHFGF-HVVLAED------AGQEAVYQACVQPLLEAFFEGFNATVFAYGQ 92
Query: 86  TGEKTNYLL 94
           TG    Y +
Sbjct: 93  TGSGKTYTM 101

>pdb|1BG2|A Chain A, Human Ubiquitous Kinesin Motor Domain Length = 325

Iteration: 1
 Score = 45.4 bits (106), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN 95
          K +AFD  F S         SQE+V++   + I+ +  +GYN  IFAYGQT     + + 
Sbjct: 44 KPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTME 96
Query: 96 G 96
          G
Sbjct: 97 G 97

>pdb|1F9U|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20  QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
           + T +  T + H      F FD  F   D N+        VF  +G+ ++ ++  GYN C
Sbjct: 41  EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 87
Query: 80  IFAYGQTGE-KTNYLLN-GNGPFP 101
           IFAYGQTG  KT  +LN G+G  P
Sbjct: 88  IFAYGQTGSGKTFTMLNPGDGIIP 111

>pdb|1F9T|A Chain A, Crystal Structures Of Kinesin Mutants Reveal A Signalling Pathway For Activation Of The Motor Atpase Length = 358

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20  QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
           + T +  T + H      F FD  F   D N+        VF  +G+ ++ ++  GYN C
Sbjct: 52  EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 98
Query: 80  IFAYGQTGE-KTNYLLN-GNGPFP 101
           IFAYGQTG  KT  +LN G+G  P
Sbjct: 99  IFAYGQTGSGKTFTMLNPGDGIIP 122

>pdb|1F9V|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20  QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
           + T +  T + H      F FD  F   D N+        VF  +G+ ++ ++  GYN C
Sbjct: 41  EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 87
Query: 80  IFAYGQTGE-KTNYLLN-GNGPFP 101
           IFAYGQTG  KT  +LN G+G  P
Sbjct: 88  IFAYGQTGSGKTFTMLNPGDGIIP 111

>pdb|3KAR|A Chain A, The Motor Domain Of Kinesin-Like Protein Kar3, A Saccharomyces Cerevisiae Kinesin-Related Protein Length = 346

Iteration: 1
 Score = 45.4 bits (106), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20  QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
           + T +  T + H      F FD  F   D N+        VF  +G+ ++ ++  GYN C
Sbjct: 40  EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 86
Query: 80  IFAYGQTGE-KTNYLLN-GNGPFP 101
           IFAYGQTG  KT  +LN G+G  P
Sbjct: 87  IFAYGQTGSGKTFTMLNPGDGIIP 110

>pdb|1F9W|A Chain A, Crystal Structures Of Mutants Reveal A Signalling Pathway For Activation Of The Kinesin Motor Atpase Length = 347

Iteration: 1
 Score = 45.4 bits (106), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 31/84 (36%), Positives = 43/84 (51%), Gaps = 15/84 (17%)
Query: 20  QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
           + T +  T + H      F FD  F   D N+        VF  +G+ ++ ++  GYN C
Sbjct: 41  EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVC 87
Query: 80  IFAYGQTGE-KTNYLLN-GNGPFP 101
           IFAYGQTG  KT  +LN G+G  P
Sbjct: 88  IFAYGQTGSGKTFTMLNPGDGIIP 111

>pdb|2REP|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin Family Member C1 Length = 376

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 47/98 (47%), Gaps = 14/98 (14%)
Query: 2   PSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVF 61
           PS   TR+ L  + + R      T +G     P   F+FD  F       P  + Q++VF
Sbjct: 54  PSDPPTRLSLSRSDERRG-----TLSGAPAPPPRHDFSFDRVF-------PPGSGQDEVF 101
Query: 62  DALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP 99
           + +   ++ +A  GY  CIFAYGQTG    + + G GP
Sbjct: 102 EEIAM-LVQSALDGYPVCIFAYGQTGSGKTFTMEG-GP 137

>pdb|4GKR|A Chain A, Structure Of The C-Terminal Motor Domain Of Kar3 From Candida Glabrata Length = 371

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 29/76 (38%), Positives = 42/76 (55%), Gaps = 13/76 (17%)
Query: 28  GRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
           G S + P   F FD  F   + N       +++F  +G+ ++ ++  GYN CIFAYGQTG
Sbjct: 69  GNSQVIP---FKFDKIFDQQETN-------DEIFKEVGQ-LIQSSLDGYNVCIFAYGQTG 117
Query: 88  E-KTNYLLN-GNGPFP 101
             KT  +LN G+G  P
Sbjct: 118 SGKTYTMLNPGDGIVP 133

>pdb|2H58|A Chain A, Crystal Structure Of The Kifc3 Motor Domain In Complex With Adp Length = 330

Iteration: 1
 Score = 44.7 bits (104), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 8/73 (10%)
Query: 31  HLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKT 90
           H   P +F  D  F    P     ASQ+ VF  + + ++ +   G+N CIFAYGQTG   
Sbjct: 43  HKGKPVSFELDKVF---SPQ----ASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGK 94
Query: 91  NYLLNGNGPFPLI 103
            Y + G    P I
Sbjct: 95  TYTMEGTAENPGI 107

>pdb|1X88|A Chain A, Human Eg5 Motor Domain Bound To Mg-Adp And Monastrol Length = 359

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17  VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
           VRK+ +  TG G +     KT+ FD  F +          Q  V+ ++   ILD    GY
Sbjct: 37  VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 88
Query: 77  NACIFAYGQTGEKTNYLLNG 96
           N  IFAYGQTG    + + G
Sbjct: 89  NCTIFAYGQTGTGKTFTMEG 108

>pdb|4A1Z|A Chain A, Eg5-1 Length = 368

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17  VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
           VRK+ +  TG G +     KT+ FD  F +          Q  V+ ++   ILD    GY
Sbjct: 46  VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 97
Query: 77  NACIFAYGQTGEKTNYLLNG 96
           N  IFAYGQTG    + + G
Sbjct: 98  NCTIFAYGQTGTGKTFTMEG 117

>pdb|3ZCW|A Chain A, Eg5 - New Allosteric Binding Site Length = 348

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17  VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
           VRK+ +  TG G +     KT+ FD  F +          Q  V+ ++   ILD    GY
Sbjct: 31  VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 82
Query: 77  NACIFAYGQTGEKTNYLLNG 96
           N  IFAYGQTG    + + G
Sbjct: 83  NCTIFAYGQTGTGKTFTMEG 102

>pdb|3HQD|A Chain A, Human Kinesin Eg5 Motor Domain In Complex With Amppnp And Mg2+ Length = 369

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17  VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
           VRK+ +  TG G +     KT+ FD  F +          Q  V+ ++   ILD    GY
Sbjct: 46  VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 97
Query: 77  NACIFAYGQTGEKTNYLLNG 96
           N  IFAYGQTG    + + G
Sbjct: 98  NCTIFAYGQTGTGKTFTMEG 117

>pdb|3T0Q|A Chain A, Motor Domain Structure Of The Kar3-Like Kinesin From Ashbya Gossypii Length = 349

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 27/67 (40%), Positives = 41/67 (61%), Gaps = 10/67 (14%)
Query: 38  FAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KTNYLLN- 95
           F FD  F   +P+  N    +++F+ + R ++ ++  GYN CIFAYGQTG  KT  +LN 
Sbjct: 55  FQFDMIF---EPSHTN----KEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNA 106
Query: 96  GNGPFPL 102
           G+G  P+
Sbjct: 107 GDGMIPM 113

>pdb|1Q0B|A Chain A, Crystal Structure Of The Motor Protein Ksp In Complex With Adp And Monastrol Length = 367

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17  VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
           VRK+ +  TG G +     KT+ FD  F +          Q  V+ ++   ILD    GY
Sbjct: 45  VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 96
Query: 77  NACIFAYGQTGEKTNYLLNG 96
           N  IFAYGQTG    + + G
Sbjct: 97  NCTIFAYGQTGTGKTFTMEG 116

>pdb|4A28|A Chain A, Eg5-2 Length = 368

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17  VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
           VRK+ +  TG G +     KT+ FD  F +          Q  V+ ++   ILD    GY
Sbjct: 46  VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 97
Query: 77  NACIFAYGQTGEKTNYLLNG 96
           N  IFAYGQTG    + + G
Sbjct: 98  NCTIFAYGQTGTGKTFTMEG 117

>pdb|1II6|A Chain A, Crystal Structure Of The Mitotic Kinesin Eg5 In Complex With Mg-Adp. Length = 368

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17  VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
           VRK+ +  TG G +     KT+ FD  F +          Q  V+ ++   ILD    GY
Sbjct: 46  VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 97
Query: 77  NACIFAYGQTGEKTNYLLNG 96
           N  IFAYGQTG    + + G
Sbjct: 98  NCTIFAYGQTGTGKTFTMEG 117

>pdb|4AP0|A Chain A, The Mitotic Kinesin Eg5 In Complex With Mg-Adp And Ispinesib Length = 370

Iteration: 1
 Score = 43.9 bits (102), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 28/80 (35%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
Query: 17  VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGY 76
           VRK+ +  TG G +     KT+ FD  F +          Q  V+ ++   ILD    GY
Sbjct: 48  VRKEVSVRTG-GLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGY 99
Query: 77  NACIFAYGQTGEKTNYLLNG 96
           N  IFAYGQTG    + + G
Sbjct: 100 NCTIFAYGQTGTGKTFTMEG 119

>pdb|3NWN|A Chain A, Crystal Structure Of The Human Kif9 Motor Domain In Complex With Adp Length = 359

Iteration: 1
 Score = 43.5 bits (101), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 17/42 (40%), Positives = 25/42 (59%)
Query: 55  ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96
           ASQ+ V++ + +D++  A  GYN  I  YGQTG    Y + G
Sbjct: 83  ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMG 124

>pdb|2GRY|A Chain A, Crystal Structure Of The Human Kif2 Motor Domain In Complex With Adp Length = 420

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Composition-based stats.
 Identities = 31/97 (31%), Positives = 45/97 (46%), Gaps = 18/97 (18%)
Query: 1   MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
           +PS+D   V+ P  KQ    T YL           +TF FD   Y+ D + PN    E V
Sbjct: 115 IPSKDVVMVHEP--KQKVDLTRYLEN---------QTFRFD---YAFDDSAPN----EMV 156
Query: 61  FDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN 97
           +    R +++  F+   A  FAYGQTG    + + G+
Sbjct: 157 YRFTARPLVETIFERGMATCFAYGQTGSGKTHTMGGD 193

>pdb|3H4S|A Chain A, Structure Of The Complex Of A Mitotic Kinesin With Its Calcium Binding Regulator Length = 386

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 55  ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP 101
           ASQ+ +F+   + ++ +A  GYN CIFAYGQTG    + + G+   P
Sbjct: 67  ASQDDIFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGHESNP 112

>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1 Fused To A Synthetic Heterodimeric Coiled Coil Length = 403

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/84 (35%), Positives = 42/84 (50%), Gaps = 15/84 (17%)
Query: 20  QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNAC 79
           + T +  T + H      F FD  F   D N+        VF  +G+ ++ ++  GYN  
Sbjct: 97  EVTKIQNTAQVH-----EFKFDKIFDQQDTNV-------DVFKEVGQ-LVQSSLDGYNVA 143
Query: 80  IFAYGQTGE-KTNYLLN-GNGPFP 101
           IFAYGQTG  KT  +LN G+G  P
Sbjct: 144 IFAYGQTGSGKTFTMLNPGDGIIP 167

>pdb|1SDM|A Chain A, Crystal Structure Of Kinesin-Like Calmodulin Binding Protein Length = 369

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 55  ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP 101
           A+Q+ VF+   + ++ +A  GYN CIFAYGQTG    + + G    P
Sbjct: 59  ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNP 104

>pdb|3DC4|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Nod In Complex With Adp Length = 344

Iteration: 1
 Score = 40.4 bits (93), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 28  GRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
           G+S +     F FDH F       P   SQ++++ AL   ++D   +G+     AYGQTG
Sbjct: 53  GKSLIVDQNEFHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTG 105
Query: 88  EKTNYLLNGNGP 99
              +Y +    P
Sbjct: 106 TGKSYSMGMTPP 117

>pdb|3PXN|A Chain A, Crystal Structure Of The Drosophila Kinesin Family Member Kin10NOD IN Complex With Divalent Manganese And Adp Length = 344

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)
Query: 28  GRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
           G+S +     F FDH F       P   SQ++++ AL   ++D   +G+     AYGQTG
Sbjct: 53  GKSLIVDQNEFHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYGQTG 105
Query: 88  EKTNYLLNGNGP 99
              +Y +    P
Sbjct: 106 TGKSYSMGMTPP 117

>pdb|1GOJ|A Chain A, Structure Of A Fast Kinesin: Implications For Atpase Mechanism And Interactions With Microtubules Length = 355

Iteration: 1
 Score = 39.3 bits (90), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 7/60 (11%)
Query: 37  TFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG 96
           +F FD  F            Q  +FD   +  +D+   GYN  +FAYGQTG   +Y + G
Sbjct: 48  SFTFDRVF-------DMSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMG 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	103
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	4e-30
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	2e-28
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	2e-28
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	1e-23
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	4e-23
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	9e-23
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	1e-22
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	2e-22
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	2e-22
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	4e-22
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	5e-22
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	3e-21
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	5e-21
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	9e-21
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	1e-20
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	1e-20
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	4e-20
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	5e-20
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	1e-18
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	4e-18
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	4e-18
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	7e-18
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	2e-17
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	5e-17
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	5e-16
3u06_A	412	Protein claret segregational; motor domain, stalk	6e-16

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa} Length = 443

 Score =  110 bits (276), Expect = 4e-30
 Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 4/86 (4%)

Query: 2   PSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVF 61
           P+ + T + +P             G     +   K+F FD  F+S +    ++A+QE V+
Sbjct: 66  PATERTSLLVPQETDFADAR----GARSRRVLEEKSFTFDKSFWSHNTEDEHYATQEHVY 121

Query: 62  DALGRDILDNAFQGYNACIFAYGQTG 87
           D+LG + LD+ F+GY+ CIFAYGQTG
Sbjct: 122 DSLGEEFLDHNFEGYHTCIFAYGQTG 147

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} Length = 354

 Score =  104 bits (261), Expect = 2e-28
 Identities = 36/78 (46%), Positives = 45/78 (57%), Gaps = 6/78 (7%)

Query: 16  QVRKQTTYLT-----GTGRSHLKPPKTFAFDHCFYSLDPNL-PNFASQEKVFDALGRDIL 69
            V      L       +       PK FA+DHCF+S+D ++   +A Q+ VF  LG +IL
Sbjct: 26  DVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENIL 85

Query: 70  DNAFQGYNACIFAYGQTG 87
            NAF GYNACIFAYGQTG
Sbjct: 86  QNAFDGYNACIFAYGQTG 103

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C* Length = 366

 Score =  104 bits (261), Expect = 2e-28
 Identities = 31/73 (42%), Positives = 49/73 (67%), Gaps = 2/73 (2%)

Query: 16  QVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQ 74
           Q+   TT +    +   + PK+F+FD+ ++S   P   N+ASQ++V+  +G ++L +AF+
Sbjct: 29  QMSGSTTTIVNPKQPK-ETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFE 87

Query: 75  GYNACIFAYGQTG 87
           GYN CIFAYGQTG
Sbjct: 88  GYNVCIFAYGQTG 100

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A* Length = 372

 Score = 91.5 bits (228), Expect = 1e-23
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 7/69 (10%)

Query: 19  KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNA 78
                +     +  + PKTF FD  +          A Q +++D   R ++D+  QG+N 
Sbjct: 51  LGQVSVKNPKGTAHEMPKTFTFDAVY-------DWNAKQFELYDETFRPLVDSVLQGFNG 103

Query: 79  CIFAYGQTG 87
            IFAYGQTG
Sbjct: 104 TIFAYGQTG 112

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} Length = 355

 Score = 90.0 bits (224), Expect = 4e-23
 Identities = 20/85 (23%), Positives = 30/85 (35%), Gaps = 9/85 (10%)

Query: 5   DTTRVYLPTAKQV--RKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFD 62
               V+ P  ++V                      F FD  F          ++Q +VF+
Sbjct: 39  KHILVFDPKQEEVSFFHGKKTTNQNVIKKQNKDLKFVFDAVF-------DETSTQSEVFE 91

Query: 63  ALGRDILDNAFQGYNACIFAYGQTG 87
              + IL +   GYN  + AYG TG
Sbjct: 92  HTTKPILRSFLNGYNCTVLAYGATG 116

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis} Length = 350

 Score = 88.8 bits (221), Expect = 9e-23
 Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 7/76 (9%)

Query: 12  PTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDN 71
             + QV         +     K P+TF FD  +   D      +    +F A  + ++D 
Sbjct: 32  EASAQVIVDPPEQEKSATQAKKVPRTFTFDAVY---DQT----SCNYGIFQASFKPLIDA 84

Query: 72  AFQGYNACIFAYGQTG 87
             +G+N+ IFAYGQTG
Sbjct: 85  VLEGFNSTIFAYGQTG 100

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens} Length = 349

 Score = 88.4 bits (220), Expect = 1e-22
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 7/61 (11%)

Query: 27 TGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQT 86
               +   K+F FD  F+          + + V++ +   I+D+A QGYN  IFAYGQT
Sbjct: 35 NVIYQVDGSKSFNFDRVFHG-------NETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQT 87

Query: 87 G 87
           
Sbjct: 88 A 88

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} PDB: 2xt3_A* Length = 344

 Score = 88.0 bits (219), Expect = 2e-22
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)

Query: 26 GTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQ 85
          G GR  L   + F F         +    A QE V+ A  + +L+  F+G+NA +FAYGQ
Sbjct: 40 GLGRVTLGRDRHFGFHVVL---AED----AGQEAVYQACVQPLLEAFFEGFNATVFAYGQ 92

Query: 86 TG 87
          TG
Sbjct: 93 TG 94

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9 Length = 355

 Score = 88.0 bits (219), Expect = 2e-22
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
          +   +F FD  F            Q  +FD   +  +D+   GYN  +FAYGQTG
Sbjct: 44 EAQGSFTFDRVFDM-------SCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTG 91

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A* Length = 344

 Score = 87.3 bits (217), Expect = 4e-22
 Identities = 20/63 (31%), Positives = 30/63 (47%), Gaps = 7/63 (11%)

Query: 25  TGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYG 84
              G+S +     F FDH F       P   SQ++++ AL   ++D   +G+     AYG
Sbjct: 50  WSDGKSLIVDQNEFHFDHAF-------PATISQDEMYQALILPLVDKLLEGFQCTALAYG 102

Query: 85  QTG 87
           QTG
Sbjct: 103 QTG 105

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ... Length = 359

 Score = 86.9 bits (216), Expect = 5e-22
 Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 7/69 (10%)

Query: 19 KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNA 78
          ++   +   G +     KT+ FD  F +          Q  V+ ++   ILD    GYN 
Sbjct: 38 RKEVSVRTGGLADKSSRKTYTFDMVFGA-------STKQIDVYRSVVCPILDEVIMGYNC 90

Query: 79 CIFAYGQTG 87
           IFAYGQTG
Sbjct: 91 TIFAYGQTG 99

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A* Length = 365

 Score = 84.2 bits (209), Expect = 5e-21
 Identities = 25/59 (42%), Positives = 31/59 (52%), Gaps = 8/59 (13%)

Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
             K + FD  F    PN    ASQEKV++   + I+ +   GYN  IFAYGQT   KT
Sbjct: 48 IAGKVYLFDKVF---KPN----ASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKT 99

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A* Length = 325

 Score = 83.0 bits (206), Expect = 9e-21
 Identities = 23/58 (39%), Positives = 31/58 (53%), Gaps = 8/58 (13%)

Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
            K +AFD  F S         SQE+V++   + I+ +  +GYN  IFAYGQT   KT
Sbjct: 42 ASKPYAFDRVFQS-------STSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKT 92

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster} Length = 373

 Score = 83.4 bits (207), Expect = 1e-20
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 8/59 (13%)

Query: 33  KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
           K  K F FD  F    P     + Q  V+  +   +++    GYN  +FAYGQTG  KT
Sbjct: 64  KLTKKFTFDRSF---GPE----SKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKT 115

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens} Length = 388

 Score = 83.5 bits (207), Expect = 1e-20
 Identities = 13/55 (23%), Positives = 25/55 (45%), Gaps = 7/55 (12%)

Query: 33  KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
           +    + FD  +          ++Q+ ++    + IL +  +G NA + AYG TG
Sbjct: 62  QETLKYQFDAFY---GER----STQQDIYAGSVQPILRHLLEGQNASVLAYGPTG 109

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A* Length = 410

 Score = 82.3 bits (204), Expect = 4e-20
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)

Query: 1   MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
           +PS+    V+ P  K              +     + F FD  F   D      AS E V
Sbjct: 97  VPSKCLLLVHEPKLKV-----------DLTKYLENQAFCFDFAF---DET----ASNEVV 138

Query: 61  FDALGRDILDNAFQGYNACIFAYGQTG 87
           +    R ++   F+G  A  FAYGQTG
Sbjct: 139 YRFTARPLVQTIFEGGKATCFAYGQTG 165

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D* Length = 387

 Score = 81.9 bits (203), Expect = 5e-20
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)

Query: 1   MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
           +PS+    V+ P  K              +     + F FD  F   D      AS E V
Sbjct: 77  IPSKCLLLVHEPKLKV-----------DLTKYLENQAFCFDFAF---DET----ASNEVV 118

Query: 61  FDALGRDILDNAFQGYNACIFAYGQTG 87
           +    R ++   F+G  A  FAYGQTG
Sbjct: 119 YRFTARPLVQTIFEGGKATCFAYGQTG 145

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii} Length = 349

 Score = 77.6 bits (192), Expect = 1e-18
 Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 8/55 (14%)

Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
               F FD  F   +P+     + +++F+ + R ++ ++  GYN CIFAYGQTG
Sbjct: 50 ILSYNFQFDMIF---EPS----HTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTG 96

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens} Length = 376

 Score = 76.6 bits (189), Expect = 4e-18
 Identities = 24/87 (27%), Positives = 34/87 (39%), Gaps = 8/87 (9%)

Query: 1   MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
                            R      T +G     P   F+FD  F    P     + Q++V
Sbjct: 48  PSGPGGPSDPPTRLSLSRSDERRGTLSGAPAPPPRHDFSFDRVF---PPG----SGQDEV 100

Query: 61  FDALGRDILDNAFQGYNACIFAYGQTG 87
           F+ +   ++ +A  GY  CIFAYGQTG
Sbjct: 101 FEEI-AMLVQSALDGYPVCIFAYGQTG 126

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A* Length = 347

 Score = 76.1 bits (188), Expect = 4e-18
 Identities = 21/64 (32%), Positives = 29/64 (45%), Gaps = 8/64 (12%)

Query: 24 LTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
          +  T   +      F FD  F   D       +   VF  +G  ++ ++  GYN CIFAY
Sbjct: 40 MEVTKIQNTAQVHEFKFDKIF---DQQ----DTNVDVFKEVG-QLVQSSLDGYNVCIFAY 91

Query: 84 GQTG 87
          GQTG
Sbjct: 92 GQTG 95

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A* Length = 369

 Score = 75.7 bits (187), Expect = 7e-18
 Identities = 24/58 (41%), Positives = 32/58 (55%), Gaps = 9/58 (15%)

Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
            K   +D  F   D N    A+Q+ VF+   + ++ +A  GYN CIFAYGQTG  KT
Sbjct: 45 KAKQHMYDRVF---DGN----ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKT 94

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae} Length = 403

 Score = 74.6 bits (184), Expect = 2e-17
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 8/64 (12%)

Query: 24  LTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
           +  T   +      F FD  F   D       +   VF  +   ++ ++  GYN  IFAY
Sbjct: 96  MEVTKIQNTAQVHEFKFDKIF---DQQ----DTNVDVFKEV-GQLVQSSLDGYNVAIFAY 147

Query: 84  GQTG 87
           GQTG
Sbjct: 148 GQTG 151

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens} Length = 330

 Score = 73.0 bits (180), Expect = 5e-17
 Identities = 21/54 (38%), Positives = 29/54 (53%), Gaps = 8/54 (14%)

Query: 34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
           P +F  D  F    P     ASQ+ VF  + + ++ +   G+N CIFAYGQTG
Sbjct: 46 KPVSFELDKVF---SPQ----ASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTG 91

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9 Length = 360

 Score = 70.4 bits (173), Expect = 5e-16
 Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 9/58 (15%)

Query: 35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGE-KT 90
             F  D  F   D           V++   + ++ + ++ G     FAYGQTG  KT
Sbjct: 49 RHEFIVDKVF---DDT----VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKT 99

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A* Length = 412

 Score = 70.4 bits (173), Expect = 6e-16
 Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 9/58 (15%)

Query: 34  PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGE-KT 90
             + F+FD  F    P     +SQ  +F+ +   ++ +A  GYN CIFAYGQTG  KT
Sbjct: 104 GQQIFSFDQVF---HPL----SSQSDIFEMV-SPLIQSALDGYNICIFAYGQTGSGKT 153

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	103
3gbj_A	354	KIF13B protein; kinesin, motor domain, ADP, struct	99.94
2owm_A	443	Nckin3-434, related to kinesin-like protein KIF1C;	99.94
2vvg_A	350	Kinesin-2; motor protein, nucleotide-binding, micr	99.94
3nwn_A	359	Kinesin-like protein KIF9; motor domain, ADP, stru	99.94
2zfi_A	366	Kinesin-like protein KIF1A, kinesin heavy chain is	99.94
3lre_A	355	Kinesin-like protein KIF18A; motor protein, nucleo	99.93
1t5c_A	349	CENP-E protein, centromeric protein E; kinesin mot	99.93
3b6u_A	372	Kinesin-like protein KIF3B; structural genomics co	99.93
4a14_A	344	Kinesin, kinesin-like protein KIF7; motor protein,	99.93
1goj_A	355	Kinesin, kinesin heavy chain; motor protein, ATPas	99.93
3bfn_A	388	Kinesin-like protein KIF22; limited proteolysis, s	99.93
1bg2_A	325	Kinesin; motor protein, ATPase, microtubule associ	99.93
3dc4_A	344	Kinesin-like protein NOD; catalytic domain, ATPase	99.93
2wbe_C	373	Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mit	99.92
2h58_A	330	Kinesin-like protein KIFC3 variant; motor domain,	99.92
2heh_A	387	KIF2C protein; kinesin, motor domain, ADP, structu	99.92
1v8k_A	410	Kinesin-like protein KIF2C; microtubule destabiliz	99.92
3u06_A	412	Protein claret segregational; motor domain, stalk	99.92
1x88_A	359	Kinesin-like protein KIF11; switch II, motor domai	99.92
2y65_A	365	Kinesin, kinesin heavy chain; motor protein; HET:	99.92
3cob_A	369	Kinesin heavy chain-like protein; motor, switch II	99.92
2nr8_A	358	Kinesin-like protein KIF9; motor domain, ADP, stru	99.91
3t0q_A	349	AGR253WP; kinesin, alpha and beta proteins, P-loop	99.91
1ry6_A	360	Internal kinesin; kinesin motor domain, nucleotide	99.91
1f9v_A	347	Kinesin-like protein KAR3; kinesin-related protein	99.91
2rep_A	376	Kinesin-like protein KIFC1; structural genomics co	99.9
4etp_A	403	Kinesin-like protein KAR3; kinesin motor protein,	99.9
4h1g_A	715	Maltose binding protein-cakar3 motor domain fusio;	99.89
2o0a_A	298	S.cerevisiae chromosome XVI reading frame ORF YPL2	99.58
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	95.59
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	95.19
2qgz_A	308	Helicase loader, putative primosome component; str	95.02
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	94.31
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	93.66
3te6_A	318	Regulatory protein SIR3; heterochromatin, gene sil	93.0
1qde_A	224	EIF4A, translation initiation factor 4A; DEAD box	91.88
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	91.79
1p9r_A	418	General secretion pathway protein E; bacterial typ	91.73
1vec_A	206	ATP-dependent RNA helicase P54; DEAD-box protein,	91.58
2chg_A	226	Replication factor C small subunit; DNA-binding pr	91.46
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	91.26
2gxq_A	207	Heat resistant RNA dependent ATPase; RNA helicase,	91.11
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	91.03
3bos_A	242	Putative DNA replication factor; P-loop containing	90.82
3dkp_A	245	Probable ATP-dependent RNA helicase DDX52; DEAD, A	90.79
3bor_A	237	Human initiation factor 4A-II; translation initiat	90.73
2bjv_A	265	PSP operon transcriptional activator; AAA, transcr	90.28
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	90.18
2pl3_A	236	Probable ATP-dependent RNA helicase DDX10; DEAD, s	90.04
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	89.86
1wrb_A	253	DJVLGB; RNA helicase, DEAD BOX, VASA, structural g	89.84
3eiq_A	414	Eukaryotic initiation factor 4A-I; PDCD4, anti-onc	89.76
3iuy_A	228	Probable ATP-dependent RNA helicase DDX53; REC-A-l	89.7
3llm_A	235	ATP-dependent RNA helicase A; alpha-beta-alpha, st	89.67
3ly5_A	262	ATP-dependent RNA helicase DDX18; alpha-beta, stru	89.64
3b6e_A	216	Interferon-induced helicase C domain-containing P;	89.54
3co5_A	143	Putative two-component system transcriptional RES	89.46
1t6n_A	220	Probable ATP-dependent RNA helicase; RECA-like fol	89.35
3fmo_B	300	ATP-dependent RNA helicase DDX19B; nuclear porin,	89.22
3fmp_B	479	ATP-dependent RNA helicase DDX19B; nuclear porin,	89.15
3uk6_A	368	RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding	89.1
3h1t_A	590	Type I site-specific restriction-modification syst	89.0
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	88.66
2qby_B	384	CDC6 homolog 3, cell division control protein 6 ho	88.61
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	88.6
2oxc_A	230	Probable ATP-dependent RNA helicase DDX20; DEAD, s	88.59
2v1u_A	387	Cell division control protein 6 homolog; DNA repli	88.46
3ber_A	249	Probable ATP-dependent RNA helicase DDX47; DEAD, A	88.43
3fe2_A	242	Probable ATP-dependent RNA helicase DDX5; DEAD, AD	87.63
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	87.55
2j0s_A	410	ATP-dependent RNA helicase DDX48; mRNA processing,	87.49
2c9o_A	456	RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-	87.19
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	86.98
2eyu_A	261	Twitching motility protein PILT; pilus retraction	86.91
3fht_A	412	ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box	86.55
3oiy_A	414	Reverse gyrase helicase domain; topoisomerase, DNA	86.31
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	86.23
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	86.09
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	86.08
1q0u_A	219	Bstdead; DEAD protein, RNA binding protein; 1.85A	86.01
2r62_A	268	Cell division protease FTSH homolog; ATPase domain	85.98
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	85.86
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	85.67
3i5x_A	563	ATP-dependent RNA helicase MSS116; protein-RNA com	85.47
1g8p_A	350	Magnesium-chelatase 38 kDa subunit; parallel beta	85.33
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	85.16
2fz4_A	237	DNA repair protein RAD25; RECA-like domain, DNA da	85.04
2db3_A	434	ATP-dependent RNA helicase VASA; DEAD-BOX, protein	84.94
1s2m_A	400	Putative ATP-dependent RNA helicase DHH1; ATP-bind	84.9
3pey_A	395	ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A	84.9
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	84.89
2i4i_A	417	ATP-dependent RNA helicase DDX3X; DEAD, structural	84.57
2z0m_A	337	337AA long hypothetical ATP-dependent RNA helicase	84.44
1iqp_A	327	RFCS; clamp loader, extended AAA-ATPase domain, co	84.25
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	83.94
2ewv_A	372	Twitching motility protein PILT; pilus retraction	83.61
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	83.33
2v1x_A	591	ATP-dependent DNA helicase Q1; DNA strand annealin	83.04
2r44_A	331	Uncharacterized protein; putative ATPase, structur	83.01
2z4s_A	440	Chromosomal replication initiator protein DNAA; AA	83.01
1xti_A	391	Probable ATP-dependent RNA helicase P47; alpha-bet	82.77
1lkx_A	697	Myosin IE heavy chain; myosin motor domain, lever	82.69
4a2p_A	556	RIG-I, retinoic acid inducible protein I; hydrolas	82.57
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	82.57
3pfi_A	338	Holliday junction ATP-dependent DNA helicase RUVB;	82.48
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	82.44
3fho_A	508	ATP-dependent RNA helicase DBP5; mRNA export, ATPa	82.34
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	81.97
2v26_A	784	Myosin VI; calmodulin-binding, nucleotide-binding,	81.93
1w9i_A	770	Myosin II heavy chain; molecular motor, ATPase, mo	81.91
2ykg_A	696	Probable ATP-dependent RNA helicase DDX58; hydrola	81.63
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	81.45
3sqw_A	579	ATP-dependent RNA helicase MSS116, mitochondrial;	81.43
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	81.37
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	81.19
1u0j_A	267	DNA replication protein; AAA+ protein, P-loop atpa	81.18
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	81.12
3pxg_A	468	Negative regulator of genetic competence CLPC/MEC;	80.96
1w7j_A	795	Myosin VA; motor protein, unconventional myosin, m	80.78
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	80.75
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	80.64
1w5s_A	412	Origin recognition complex subunit 2 ORC2; replica	80.54
1kk8_A	837	Myosin heavy chain, striated muscle; actin-detache	80.45
4gl2_A	699	Interferon-induced helicase C domain-containing P;	80.21
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	80.19
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	80.18
3tbk_A	555	RIG-I helicase domain; DECH helicase, ATP binding,	80.16

>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9

Probab=99.94  E-value=8.1e-28  Score=180.46  Aligned_cols=88  Identities=44%  Similarity=0.827  Sum_probs=70.7

Q ss_pred             cccCCEEEEecCCCC-----CCCCCceEEeceEEecCCCC-CCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCC
Q psy12526         16 QVRKQTTYLTGTGRS-----HLKPPKTFAFDHCFYSLDPN-LPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEK   89 (103)
Q Consensus        16 ~~~~~~~~~~~~~~~-----~~~~~~~F~fd~vf~s~~~~-~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSG   89 (103)
                      .+.++.+++..+...     ....++.|.||+|||+.|.. ..+.++|++||+.++.|+|+.+++|||+|||||||||||
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~~~~~~k~F~FD~vF~~~d~~~~~~~a~Q~~vy~~~~~~lv~~~l~G~n~tifAYGqTGSG  105 (354)
T 3gbj_A           26 DVDANKVILNPVNTNLSKGDARGQPKVFAYDHCFWSMDESVKEKYAGQDIVFKCLGENILQNAFDGYNACIFAYGQTGSG  105 (354)
T ss_dssp             EEETTEEEECCC-----------CCEEEECSEEEECSCTTCTTTBCCHHHHHHHHHHHHHHHHHTTCCEEEEEEECTTSS
T ss_pred             EeCCCeEEEeCCccccccccccCCceEEEeeEEeccCccccccccccHHHHHHHhhHHHHHHHhCCceeEEEeeCCCCCC
Confidence            344556665544321     22357899999999988743 356789999999999999999999999999999999999


Q ss_pred             CceEeccCCCCCCC
Q psy12526         90 TNYLLNGNGPFPLI  103 (103)
Q Consensus        90 KT~Tm~G~~~~pGi  103 (103)
                      |||||+|+.+++||
T Consensus       106 KTyTm~G~~~~~Gi  119 (354)
T 3gbj_A          106 KSYTMMGTADQPGL  119 (354)
T ss_dssp             HHHHHTBCSSSBCH
T ss_pred             CceEEecCCCCCch
Confidence            99999999999996

>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}

Probab=99.94  E-value=1.3e-27  Score=183.69  Aligned_cols=70  Identities=43%  Similarity=0.861  Sum_probs=65.2

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|+||+|||+++....+.++|++||+.++.|+|+.+++|||+||||||||||||||||+|..+++||
T Consensus        94 ~~~~F~FD~vF~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~GyN~tIfAYGQTGSGKTyTM~G~~~~~GI  163 (443)
T 2owm_A           94 EEKSFTFDKSFWSHNTEDEHYATQEHVYDSLGEEFLDHNFEGYHTCIFAYGQTGSGKSYTMMGTPDQPGL  163 (443)
T ss_dssp             CCEEEECSEEEEESCTTSTTCCCHHHHHHHHHHHHHHHHHTTCCEEEEEESSTTSSHHHHHTCCTTSCCH
T ss_pred             CCceEecCeEeCCCCcCCccCCCHHHHHHhhhhhHHHHhhcCCceEEEEeCCCCCCCCEEeecCCCCCch
Confidence            3689999999998776666789999999999999999999999999999999999999999999999996

>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}

Probab=99.94  E-value=1.1e-27  Score=179.60  Aligned_cols=63  Identities=33%  Similarity=0.629  Sum_probs=59.6

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|..+++||
T Consensus        54 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Gi  116 (350)
T 2vvg_A           54 VPRTFTFDAVYD-------QTSCNYGIFQASFKPLIDAVLEGFNSTIFAYGQTGAGKTWTMGGNKEEPGA  116 (350)
T ss_dssp             --EEEECSEEEC-------TTCCHHHHHHHTTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBCSSSBCH
T ss_pred             CceEeeCCEEEC-------CCcchhHHHHHHHHHHHHHHhCCCceeEEeecCCCCCCCEEeecCCccCch
Confidence            468999999999       899999999999999999999999999999999999999999999999996

>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}

Probab=99.94  E-value=4.3e-27  Score=176.81  Aligned_cols=62  Identities=32%  Similarity=0.605  Sum_probs=56.2

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC---CCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP---FPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~---~pGi  103 (103)
                      ..+.|.||+||+       + ++|++||+.+++|+|+++++|||+||||||||||||||||+|...   ++||
T Consensus        70 ~~~~F~FD~Vf~-------~-~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~Gi  134 (359)
T 3nwn_A           70 TDWSFKLDGVLH-------D-ASQDLVYETVAKDVVSQALDGYNGTIMCYGQTGAGKTYTMMGATENYKHRGI  134 (359)
T ss_dssp             CEEEEECSEEEE-------S-CCHHHHHHHHTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSCGGGBCH
T ss_pred             CceEeecCccCC-------C-CCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCCCCCccEEeCCccCCccchhh
Confidence            457899999996       3 789999999999999999999999999999999999999999754   4675

>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*

Probab=99.94  E-value=7.2e-27  Score=175.96  Aligned_cols=85  Identities=39%  Similarity=0.718  Sum_probs=67.6

Q ss_pred             cCCEEEEecCCCCCCCCCceEEeceEEecCC-CCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEecc
Q psy12526         18 RKQTTYLTGTGRSHLKPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNG   96 (103)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~F~fd~vf~s~~-~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G   96 (103)
                      .++.+++..|.. .....+.|+||+|||+.. ...+..++|++||+.+++|+|+.+++|||+||||||||||||||||+|
T Consensus        31 ~~~~~~i~~~~~-~~~~~~~f~FD~vf~~~~~~~~~~~asQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTm~G  109 (366)
T 2zfi_A           31 SGSTTTIVNPKQ-PKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMMG  109 (366)
T ss_dssp             ETTEEEECCTTC-TTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHTB
T ss_pred             CCCcEEEeccCC-CCCCceEEecceEeecCccccccccCcHHHHHHHHHHHHHHHHhcCCeeEEEEeCCCCCCCceEeeC
Confidence            344555544433 223568999999999653 333445899999999999999999999999999999999999999999


Q ss_pred             CC--CCCCC
Q psy12526         97 NG--PFPLI  103 (103)
Q Consensus        97 ~~--~~pGi  103 (103)
                      ..  +++||
T Consensus       110 ~~~~~~~Gi  118 (366)
T 2zfi_A          110 KQEKDQQGI  118 (366)
T ss_dssp             CSGGGCBCH
T ss_pred             CCccCCCcc
Confidence            84  46775

>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0

Probab=99.93  E-value=4.7e-27  Score=176.38  Aligned_cols=63  Identities=30%  Similarity=0.528  Sum_probs=60.3

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+.++|||
T Consensus        70 ~~~~F~FD~vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Gi  132 (355)
T 3lre_A           70 KDLKFVFDAVFD-------ETSTQSEVFEHTTKPILRSFLNGYNCTVLAYGATGAGKTHTMLGSADEPGV  132 (355)
T ss_dssp             CCEEEECSEEEC-------TTCCHHHHHHTTHHHHHHHHTTTCCEEEEEECCTTSSHHHHHTBCSSSBCH
T ss_pred             CCceEEeceEEC-------CCCChHHHHHHHHHHHHHHHhCCCceEEEEeCCCCCCceeeeccCCCCCCe
Confidence            356899999999       899999999999999999999999999999999999999999999999996

>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}

Probab=99.93  E-value=6.8e-27  Score=175.20  Aligned_cols=63  Identities=35%  Similarity=0.638  Sum_probs=60.5

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+|||       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|..+++||
T Consensus        42 ~~~~F~FD~Vf~-------~~~tQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Gi  104 (349)
T 1t5c_A           42 GSKSFNFDRVFH-------GNETTKNVYEEIAAPIIDSAIQGYNGTIFAYGQTASGKTYTMMGSEDHLGV  104 (349)
T ss_dssp             SSCEEECSCEEC-------TTSCHHHHHHHTTHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCSSSBCH
T ss_pred             CCeEEECCEEEC-------CCCCHHHHHHHHHHHHHHHHHcCCccceeeecCCCCCCCeEEecCCCCCch
Confidence            458999999999       899999999999999999999999999999999999999999999999996

>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*

Probab=99.93  E-value=1e-26  Score=175.44  Aligned_cols=77  Identities=31%  Similarity=0.475  Sum_probs=65.2

Q ss_pred             CEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526         20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP   99 (103)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~   99 (103)
                      +++.+..|........+.|.||+||+       +.++|++||+.+++|+|+.+++|||+||||||||||||||||+|...
T Consensus        52 ~~v~v~~~~~~~~~~~~~F~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~  124 (372)
T 3b6u_A           52 GQVSVKNPKGTAHEMPKTFTFDAVYD-------WNAKQFELYDETFRPLVDSVLQGFNGTIFAYGQTGTGKTYTMEGIRG  124 (372)
T ss_dssp             TEEEECCTTCTTTCCCEEEECSEEEC-------TTCCHHHHHHHTHHHHHHHHHTTCCEEEEEEESTTSSHHHHHTBCTT
T ss_pred             CEEEEECCCCCCCCCceEEEcCeEeC-------CcCchHHHHHHHHHHHHHHHhCCCeeeEEeecCCCCCCCEeEecCCC
Confidence            45555555443344578999999999       89999999999999999999999999999999999999999999754


Q ss_pred             ---CCCC
Q psy12526        100 ---FPLI  103 (103)
Q Consensus       100 ---~pGi  103 (103)
                         ++||
T Consensus       125 ~~~~~Gi  131 (372)
T 3b6u_A          125 DPEKRGV  131 (372)
T ss_dssp             SGGGBCH
T ss_pred             CcccCCc
Confidence               4464

>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*

Probab=99.93  E-value=7.6e-27  Score=174.57  Aligned_cols=64  Identities=33%  Similarity=0.518  Sum_probs=58.4

Q ss_pred             CCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC------CCCCCC
Q psy12526         33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN------GPFPLI  103 (103)
Q Consensus        33 ~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~------~~~pGi  103 (103)
                      ...+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|.      .+++||
T Consensus        47 ~~~~~f~FD~Vf~-------~~~~Q~~vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~~~Gi  116 (344)
T 4a14_A           47 GRDRHFGFHVVLA-------EDAGQEAVYQACVQPLLEAFFEGFNATVFAYGQTGSGKTYTMGEASVASLLEDEQGI  116 (344)
T ss_dssp             TTTEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEESSTTSSHHHHHCC--------CCCCH
T ss_pred             cccceEEEEEEEe-------cCcchhHHHHHHHHHHHHHHHhhcCeeEEEecccCCCceEeecccchhhhhhcccCC
Confidence            3568999999999       899999999999999999999999999999999999999999997      367785

>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9

Probab=99.93  E-value=1.2e-26  Score=174.19  Aligned_cols=63  Identities=32%  Similarity=0.545  Sum_probs=58.5

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC----CCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN----GPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~----~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|.    .+++||
T Consensus        45 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~~Gi  111 (355)
T 1goj_A           45 AQGSFTFDRVFD-------MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTSIDDPDGRGV  111 (355)
T ss_dssp             CCEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSCTTSTTTBCH
T ss_pred             CccEEeeCeEEC-------CCCccHHHHHHHHHHHHHHHhCCCcceEEEECCCCCCcceEeecCCCCCcccCCc
Confidence            468999999999       899999999999999999999999999999999999999999996    356775

>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}

Probab=99.93  E-value=4.3e-27  Score=178.27  Aligned_cols=63  Identities=24%  Similarity=0.430  Sum_probs=60.3

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+.+++||
T Consensus        63 ~~~~f~FD~Vf~-------~~~tQ~~Vy~~~~~plv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~Gi  125 (388)
T 3bfn_A           63 ETLKYQFDAFYG-------ERSTQQDIYAGSVQPILRHLLEGQNASVLAYGPTGAGKTHTMLGSPEQPGV  125 (388)
T ss_dssp             CEEEEECSEEEC-------TTCCHHHHHHHHTGGGHHHHTTTCCEEEEEESCTTSSHHHHHTBCSSSBCH
T ss_pred             CeeEEEcceEec-------CCCCHhHHHHHHHHHHHHHhhcCceeeEeeecCCCCCCCeEeecCccccch
Confidence            357899999999       899999999999999999999999999999999999999999999999996

>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*

Probab=99.93  E-value=6.4e-27  Score=173.91  Aligned_cols=60  Identities=37%  Similarity=0.661  Sum_probs=56.7

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFP  101 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~p  101 (103)
                      .+.|.||+||+       +.++|++||+.+++|+|+.+++|||+||||||||||||||||+|...+|
T Consensus        43 ~~~f~FD~Vf~-------~~~sQ~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~  102 (325)
T 1bg2_A           43 SKPYAFDRVFQ-------SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDP  102 (325)
T ss_dssp             TEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCT
T ss_pred             CEEEECCeEeC-------CCCCHHHHHHHHhhhhHHHHhCCCeEEEEEECCCCCCCceEecccCCCc
Confidence            58999999999       8999999999999999999999999999999999999999999986554

>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*

Probab=99.93  E-value=6e-27  Score=175.22  Aligned_cols=63  Identities=30%  Similarity=0.508  Sum_probs=58.1

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC------CCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG------PFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~------~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||.|..      +++||
T Consensus        59 ~~~~F~FD~Vf~-------~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~g~~~~~~~~~~~GI  127 (344)
T 3dc4_A           59 DQNEFHFDHAFP-------ATISQDEMYQALILPLVDKLLEGFQCTALAYGQTGTGKSYSMGMTPPGEILPEHLGI  127 (344)
T ss_dssp             TTEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHHTCCEEEEEESSTTSSHHHHHTCSCGGGSCGGGCCH
T ss_pred             cCcEEEcceEEC-------CCCCHHHHHHhhccchhhHhhCCCceEEEEecCCCCCCCeEEcCCCCCCCCcccCCc
Confidence            358999999999       8999999999999999999999999999999999999999999874      45675

>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}

Probab=99.92  E-value=2.8e-26  Score=173.09  Aligned_cols=59  Identities=32%  Similarity=0.580  Sum_probs=56.2

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP   99 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~   99 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|...
T Consensus        65 ~~~~F~FD~vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~  123 (373)
T 2wbe_C           65 LTKKFTFDRSFG-------PESKQCDVYSVVVSPLIEEVLNGYNCTVFAYGQTGTGKTHTMVGNET  123 (373)
T ss_dssp             TCEEEECSEEEC-------TTCCHHHHHHHHHHHHHHHHHHTCCEEEEEECSTTSSHHHHHTBSCS
T ss_pred             CceEEeccEEec-------cccchhHHHHHHHHHHHHHHhCCceEEEEeecCCCCCcceecccCcc
Confidence            468999999999       89999999999999999999999999999999999999999999764

>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}

Probab=99.92  E-value=2e-26  Score=171.54  Aligned_cols=62  Identities=39%  Similarity=0.763  Sum_probs=58.6

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.+ .|+|+.+++|||+||||||||||||||||+|..++|||
T Consensus        46 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~Gi  107 (330)
T 2h58_A           46 KPVSFELDKVFS-------PQASQQDVFQEV-QALVTSCIDGFNVCIFAYGQTGAGKTYTMEGTAENPGI  107 (330)
T ss_dssp             EEEEEECSEEEC-------TTCCHHHHHTTT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHTBCSSSBCH
T ss_pred             CeeEEecCeEeC-------CCCCcHhHHHHH-HHHHHHHhCCCEEEEEeECCCCCCCcEEEecCCCCCcH
Confidence            457999999999       899999999984 89999999999999999999999999999999999996

>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*

Probab=99.92  E-value=1.7e-26  Score=175.04  Aligned_cols=62  Identities=34%  Similarity=0.532  Sum_probs=54.3

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC------CCCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN------GPFPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~------~~~pGi  103 (103)
                      .+.|.||+||+       +.++|++||+.+++|+|+.+++|||+||||||||||||||||+|+      ..++||
T Consensus       100 ~~~F~FD~VF~-------~~~sQ~~Vy~~~~~plv~~~l~G~N~tifAYGQTGSGKTyTM~G~~~~~~~~~~~Gi  167 (387)
T 2heh_A          100 NQAFCFDFAFD-------ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDLSGKAQNASKGI  167 (387)
T ss_dssp             EEEEECSEEEC-------TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEESCTTSSHHHHHC-----------CCH
T ss_pred             ccEEeeeEEEe-------cCCCceeehhhhHHHHHHHHhcCCceEEEEecCCCCCCCeEeccCCCCCCcccCCce
Confidence            47899999999       899999999999999999999999999999999999999999996      346675

>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*

Probab=99.92  E-value=2.2e-26  Score=175.38  Aligned_cols=56  Identities=36%  Similarity=0.607  Sum_probs=54.0

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGN   97 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~   97 (103)
                      .+.|.||+||+       +.++|++||+.++.|||+.+++|||+||||||||||||||||+|+
T Consensus       120 ~~~F~FD~VF~-------~~~tQ~~Vy~~~~~plV~~~l~G~N~tifAYGQTGSGKTyTM~G~  175 (410)
T 1v8k_A          120 NQAFCFDFAFD-------ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGD  175 (410)
T ss_dssp             EEEEECSEEEC-------TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCB
T ss_pred             ceEEeeeEEEe-------cCCChhhhhHHHHHHHHHHHhcCCceeEEeecCCCCCCCeEeecC
Confidence            47899999999       899999999999999999999999999999999999999999996

>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*

Probab=99.92  E-value=5.3e-26  Score=173.44  Aligned_cols=61  Identities=36%  Similarity=0.716  Sum_probs=57.6

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      .+.|.||+||+       +.++|++||+. +.|+|+.+++|||+||||||||||||||||+|..+++||
T Consensus       105 ~~~F~FD~VF~-------~~~~Q~~Vf~~-v~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Gi  165 (412)
T 3u06_A          105 QQIFSFDQVFH-------PLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGV  165 (412)
T ss_dssp             CCEEECSEEEC-------TTCCHHHHHTT-THHHHHHHHTTCCEEEEEESSTTSSHHHHHTEETTEECH
T ss_pred             ceEEeeCeEcC-------CCCCHHHHHHH-HHHHHHHHHCCCceEEEEecCCCCCCeeEecCCCCCCcc
Confidence            57899999999       89999999985 569999999999999999999999999999999999986

>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...

Probab=99.92  E-value=4e-26  Score=171.51  Aligned_cols=59  Identities=37%  Similarity=0.637  Sum_probs=55.9

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP   99 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~   99 (103)
                      ..+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|...
T Consensus        53 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~  111 (359)
T 1x88_A           53 SRKTYTFDMVFG-------ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERS  111 (359)
T ss_dssp             EEEEEECSEEEC-------TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCC
T ss_pred             CceEEeceEEEe-------ccCchhHHHHHHHHHhHHHHhCCCceEEEEeCCCCCCCceEEeccCC
Confidence            358999999999       89999999999999999999999999999999999999999999754

>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*

Probab=99.92  E-value=5.6e-26  Score=171.07  Aligned_cols=62  Identities=37%  Similarity=0.548  Sum_probs=57.5

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC---CCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP---FPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~---~pGi  103 (103)
                      .+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|...   ++||
T Consensus        50 ~~~f~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifAYGqTGSGKTyTm~G~~~~~~~~Gi  114 (365)
T 2y65_A           50 GKVYLFDKVFK-------PNASQEKVYNEAAKSIVTDVLAGYNGTIFAYGQTSSGKTHTMEGVIGDSVKQGI  114 (365)
T ss_dssp             TEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTTTBCH
T ss_pred             CEEEeCceEec-------CCCCHHHHHHHhhhhHHHHHhCCCceEEEeecCCCCCCceEEecCCCCcccCCh
Confidence            58999999999       89999999999999999999999999999999999999999999754   4465

>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*

Probab=99.92  E-value=6.4e-26  Score=170.98  Aligned_cols=62  Identities=35%  Similarity=0.695  Sum_probs=59.0

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+. +.|+|+.+++|||+||||||||||||||||+|+.++|||
T Consensus        45 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~-~~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~~~~~Gi  106 (369)
T 3cob_A           45 KAKQHMYDRVFD-------GNATQDDVFED-TKYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGL  106 (369)
T ss_dssp             CEEEEECSEEEC-------TTCCHHHHHHT-TTHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCSSSBCH
T ss_pred             CceEEecCEEEC-------CCCCcceehhh-hhhhhHhhhcCCceEEEEECCCCCCCeEeecCCCCCCch
Confidence            458999999999       89999999999 689999999999999999999999999999999999996

>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}

Probab=99.91  E-value=1.8e-25  Score=167.49  Aligned_cols=59  Identities=34%  Similarity=0.737  Sum_probs=54.1

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      .+.|.||+||+       +.++|++||+.+ .|+|+++++|||+||||||||||||||||+|..  +||
T Consensus        52 ~~~f~FD~Vf~-------~~~~Q~~vf~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTm~g~~--~Gi  110 (349)
T 3t0q_A           52 SYNFQFDMIFE-------PSHTNKEIFEEI-RQLVQSSLDGYNVCIFAYGQTGSGKTYTMLNAG--DGM  110 (349)
T ss_dssp             EEEEEESEEEC-------TTCCHHHHHHHH-HHHHHGGGTTCEEEEEEECSTTSSHHHHHHSTT--TSH
T ss_pred             ceeeecCEEEC-------CCccHHHHHHHH-HHHHHHHHCCcceeEEEeCCCCCCCceEeCCCC--Cch
Confidence            57899999999       899999999985 699999999999999999999999999999963  464

>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9

Probab=99.91  E-value=1.3e-25  Score=168.89  Aligned_cols=62  Identities=26%  Similarity=0.460  Sum_probs=57.5

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCceEeccCC-----CCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTNYLLNGNG-----PFPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT~Tm~G~~-----~~pGi  103 (103)
                      .+.|.||+||+       +.++|++||+.++.|+|..+++ ||||||||||||||||||||+|..     ++|||
T Consensus        49 ~~~F~FD~Vf~-------~~~~Q~~Vy~~~~~plv~~~~~~G~n~tifAYGqTGSGKTyTM~G~~~~~~~~~~Gi  116 (360)
T 1ry6_A           49 RHEFIVDKVFD-------DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGI  116 (360)
T ss_dssp             EEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCH
T ss_pred             cceEEeeeEec-------CCCCHHHHHHHHhhhhhhhhccCCceeEEEeeCCCCCCCCEEEecCCCCCCccCCCc
Confidence            47899999999       8999999999999999999996 999999999999999999999984     67775

>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*

Probab=99.91  E-value=3.5e-25  Score=165.80  Aligned_cols=60  Identities=32%  Similarity=0.600  Sum_probs=54.8

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.+ .|+|+.+++|||+||||||||||||||||+|.  ++||
T Consensus        50 ~~~~f~FD~Vf~-------~~~~Q~~Vy~~v-~~lv~~~l~G~n~tifAYGqTGSGKTyTM~G~--~~Gi  109 (347)
T 1f9v_A           50 QVHEFKFDKIFD-------QQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGI  109 (347)
T ss_dssp             CEEEEEESEEEC-------TTCCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSH
T ss_pred             CceEEeeCEEEC-------CCCCHHHHHHHH-HHHHHHhcCCceeEEEEECCCCCCCcEeccCC--CCCc
Confidence            458999999999       899999999985 69999999999999999999999999999995  4564

>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}

Probab=99.90  E-value=7.3e-25  Score=165.53  Aligned_cols=61  Identities=33%  Similarity=0.686  Sum_probs=55.2

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC----CCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP----FPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~----~pGi  103 (103)
                      .+.|.||+||+       +.++|++||+.+ .++|+.+++|||+||||||||||||||||+|...    ++||
T Consensus        82 ~~~F~FD~Vf~-------~~~~Q~~Vy~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~G~~~~~~~~~Gi  146 (376)
T 2rep_A           82 RHDFSFDRVFP-------PGSGQDEVFEEI-AMLVQSALDGYPVCIFAYGQTGSGKTFTMEGGPGGDPQLEGL  146 (376)
T ss_dssp             -CEEECSEEEC-------TTCCHHHHHHHH-HHHHHGGGGTCCEEEEEECSTTSSHHHHHTBCSSCCGGGBCH
T ss_pred             ceeeeecEEcC-------CcccchhhhhhH-HHHHHHhcCCCceEEEEeCCCCCCCceEeecCCCCCcccCCc
Confidence            57899999999       899999999986 5899999999999999999999999999999753    6675

>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}

Probab=99.90  E-value=1.1e-24  Score=165.84  Aligned_cols=60  Identities=30%  Similarity=0.540  Sum_probs=54.4

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.+ .|+|+++++|||+||||||||||||||||+|+  ++||
T Consensus       106 ~~~~F~FD~VF~-------~~~~Q~~Vf~~v-~~lv~~~l~G~N~tifAYGqTGSGKTyTM~g~--~~Gi  165 (403)
T 4etp_A          106 QVHEFKFDKIFD-------QQDTNVDVFKEV-GQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNP--GDGI  165 (403)
T ss_dssp             EEEEEEESEEEC-------TTCCHHHHHHHH-HHHHHHHHTTCCEEEEEESCTTSSHHHHHHCT--TTSH
T ss_pred             CceEEEcCEEEC-------CCCchHHHHHHH-HHHHHHHhCCcceEEEEECCCCCCCceEeCCC--CCcc
Confidence            358899999999       899999999985 58999999999999999999999999999996  3464

>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli}

Probab=99.89  E-value=1.7e-24  Score=173.55  Aligned_cols=73  Identities=27%  Similarity=0.453  Sum_probs=59.7

Q ss_pred             CEEEEecCCCCCCCCCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCC
Q psy12526         20 QTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGP   99 (103)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~   99 (103)
                      +++++..+.. .....++|+||+||+       +.++|++||+.+ .|+|+++++|||+||||||||||||||||+|.  
T Consensus       415 ~~~~~~~~~~-~~~~~~~f~fd~vf~-------~~~~q~~v~~~~-~~~v~~~~~G~n~~i~ayGqtgsGKT~Tm~g~--  483 (715)
T 4h1g_A          415 QELVITRNIN-NNFSNLRFLFDKIFE-------REQSNDLVFEEL-SQLIQCSLDGTNVCVFAYGQTGSGKTFTMSHP--  483 (715)
T ss_dssp             CEEEEEEEET-TEEEEEEEECSEEEC-------SSCCHHHHGGGT-HHHHHHHHTTCCEEEEEESSTTSSHHHHHHCT--
T ss_pred             CeEEEcCCCC-CCCCCeEEEeceEeC-------CCCCHHHHHHHH-HHHHHHHhCCceEEEEccCCCCCchhhccCCC--
Confidence            4444433333 223569999999998       899999999875 59999999999999999999999999999994  


Q ss_pred             CCCC
Q psy12526        100 FPLI  103 (103)
Q Consensus       100 ~pGi  103 (103)
                      ++||
T Consensus       484 ~~Gi  487 (715)
T 4h1g_A          484 TNGM  487 (715)
T ss_dssp             TTSH
T ss_pred             CCCc
Confidence            5675

>2o0a_A S.cerevisiae chromosome XVI reading frame ORF YPL253C; VIK1, motor homology domain, kinesin, motor domain, microtubule-binding; 1.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=9e-16  Score=111.98  Aligned_cols=48  Identities=10%  Similarity=0.104  Sum_probs=45.7

Q ss_pred             ceEEeceEEecCCCCCCCCCCHH--HHHHHHHHHHHHHhhC-CCcEEEEeecCCCCCCc
Q psy12526         36 KTFAFDHCFYSLDPNLPNFASQE--KVFDALGRDILDNAFQ-GYNACIFAYGQTGEKTN   91 (103)
Q Consensus        36 ~~F~fd~vf~s~~~~~~~~~~q~--~v~~~~~~~lv~~~~~-G~n~ti~aYGqtgSGKT   91 (103)
                      +.|.||+||.       +.+.|+  +||+++ .++++.+++ |||+|||||||||||||
T Consensus        57 k~f~FDRVf~-------p~s~Qe~~~vf~E~-~~~i~scLd~GyNvcIfSyGQTGsGKT  107 (298)
T 2o0a_A           57 HVYKFNRVIP-------HLKVSEDKFFTQEY-SVYHDMCLNQKKNFNLISLSTTPHGSL  107 (298)
T ss_dssp             CEEECSEEEE-------TTTSCHHHHHHHTT-HHHHHHHHHTTCCEEEEEECSSCCHHH
T ss_pred             ceEEeeeEEC-------ccccccHHHHHHHH-HHHHHHHHhCCCceEEEEECCCCCCcc
Confidence            8999999998       889999  999995 699999999 99999999999999998

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=95.59  E-value=0.0016  Score=42.88  Aligned_cols=40  Identities=18%  Similarity=0.115  Sum_probs=25.9

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...|+.+++.+ ..+++.+-..-.-.++-+|.+|+|||+.+
T Consensus        16 ~~~~~~~~~~~-~~~~~~~~~~~g~~~~l~G~~G~GKTtL~   55 (180)
T 3ec2_A           16 NVSQNRALLTI-RVFVHNFNPEEGKGLTFVGSPGVGKTHLA   55 (180)
T ss_dssp             SHHHHHHHHHH-HHHHHSCCGGGCCEEEECCSSSSSHHHHH
T ss_pred             CHHHHHHHHHH-HHHHHhccccCCCEEEEECCCCCCHHHHH
Confidence            34677777655 45555533222344667999999999865

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=95.19  E-value=0.008  Score=39.97  Aligned_cols=38  Identities=18%  Similarity=0.255  Sum_probs=24.9

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCc-EEEEeecCCCCCCceEe
Q psy12526         56 SQEKVFDALGRDILDNAFQGYN-ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        56 ~q~~v~~~~~~~lv~~~~~G~n-~ti~aYGqtgSGKT~Tm   94 (103)
                      .+..+++.+ ..++...-.+.. ..|+-||++|+|||+.+
T Consensus        33 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~G~~GtGKT~la   71 (202)
T 2w58_A           33 GRIKAIRFA-ERFVAEYEPGKKMKGLYLHGSFGVGKTYLL   71 (202)
T ss_dssp             HHHHHHHHH-HHHHHHCCSSCCCCEEEEECSTTSSHHHHH
T ss_pred             hHHHHHHHH-HHHHHHhhhccCCCeEEEECCCCCCHHHHH
Confidence            566666644 345554433322 56788999999999865

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.02  E-value=0.0062  Score=44.04  Aligned_cols=39  Identities=26%  Similarity=0.412  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         56 SQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        56 ~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+..++.. +..+++..-.+..-.|+-||.+|+||||.+.
T Consensus       132 ~~~~~~~~-~~~~i~~~~~~~~~~lll~G~~GtGKT~La~  170 (308)
T 2qgz_A          132 SRMEAFSA-ILDFVEQYPSAEQKGLYLYGDMGIGKSYLLA  170 (308)
T ss_dssp             HHHHHHHH-HHHHHHHCSCSSCCEEEEECSTTSSHHHHHH
T ss_pred             HHHHHHHH-HHHHHHhccccCCceEEEECCCCCCHHHHHH
Confidence            45556653 3455555433334567789999999999753

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=94.31  E-value=0.031  Score=35.67  Aligned_cols=29  Identities=10%  Similarity=0.110  Sum_probs=20.7

Q ss_pred             HHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         66 RDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..++..+..+....++-||..|+|||+.+
T Consensus        32 ~~l~~~l~~~~~~~~ll~G~~G~GKT~l~   60 (195)
T 1jbk_A           32 RRTIQVLQRRTKNNPVLIGEPGVGKTAIV   60 (195)
T ss_dssp             HHHHHHHTSSSSCEEEEECCTTSCHHHHH
T ss_pred             HHHHHHHhcCCCCceEEECCCCCCHHHHH
Confidence            34445555555566888999999999864

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=93.66  E-value=0.036  Score=35.47  Aligned_cols=29  Identities=10%  Similarity=0.108  Sum_probs=20.6

Q ss_pred             HHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         66 RDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        66 ~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..++..+..+....|+-||.+|+|||+.+
T Consensus        32 ~~l~~~l~~~~~~~vll~G~~G~GKT~la   60 (187)
T 2p65_A           32 RRAIQILSRRTKNNPILLGDPGVGKTAIV   60 (187)
T ss_dssp             HHHHHHHTSSSSCEEEEESCGGGCHHHHH
T ss_pred             HHHHHHHhCCCCCceEEECCCCCCHHHHH
Confidence            34444445555667789999999999864

>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}

Probab=93.00  E-value=0.035  Score=40.68  Aligned_cols=33  Identities=12%  Similarity=0.103  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         62 DALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        62 ~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      +.+..-|-..+..+-..+|+-||.+|+|||.++
T Consensus        30 ~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v   62 (318)
T 3te6_A           30 TRIFLPIYDSLMSSQNKLFYITNADDSTKFQLV   62 (318)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence            333333333445677889999999999999764

>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A

Probab=91.88  E-value=0.1  Score=34.92  Aligned_cols=24  Identities=17%  Similarity=0.249  Sum_probs=18.4

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..+++|.|  ++..++||||||.+
T Consensus        44 ~i~~~~~~~~--~lv~~pTGsGKT~~   67 (224)
T 1qde_A           44 AIMPIIEGHD--VLAQAQSGTGKTGT   67 (224)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             HHHHHhcCCC--EEEECCCCCcHHHH
Confidence            3455677877  56789999999976

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=91.79  E-value=0.085  Score=37.53  Aligned_cols=36  Identities=17%  Similarity=0.254  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHHHHhhC--CC--cEEEEeecCCCCCCceE
Q psy12526         58 EKVFDALGRDILDNAFQ--GY--NACIFAYGQTGEKTNYL   93 (103)
Q Consensus        58 ~~v~~~~~~~lv~~~~~--G~--n~ti~aYGqtgSGKT~T   93 (103)
                      ..+.+.++..++...+.  +.  ...|+-||+.|+|||+.
T Consensus        13 ~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~l   52 (293)
T 3t15_A           13 PAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQ   52 (293)
T ss_dssp             HHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHH
Confidence            34555566566666543  22  13577799999999974

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=91.73  E-value=0.073  Score=40.29  Aligned_cols=28  Identities=18%  Similarity=0.195  Sum_probs=20.7

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ++..++..-...|.-.|.||||||.+|.
T Consensus       158 ~L~~l~~~~ggii~I~GpnGSGKTTlL~  185 (418)
T 1p9r_A          158 NFRRLIKRPHGIILVTGPTGSGKSTTLY  185 (418)
T ss_dssp             HHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred             HHHHHHHhcCCeEEEECCCCCCHHHHHH
Confidence            4455555456678889999999998763

>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19

Probab=91.58  E-value=0.14  Score=33.66  Aligned_cols=23  Identities=22%  Similarity=0.309  Sum_probs=16.9

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|  ++..++||||||.+
T Consensus        34 i~~~~~~~~--~lv~apTGsGKT~~   56 (206)
T 1vec_A           34 IPIALSGRD--ILARAKNGTGKSGA   56 (206)
T ss_dssp             HHHHHTTCC--EEEECCSSSTTHHH
T ss_pred             HHHHccCCC--EEEECCCCCchHHH
Confidence            345567766  45688999999964

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=91.46  E-value=0.077  Score=34.60  Aligned_cols=16  Identities=13%  Similarity=0.150  Sum_probs=13.7

Q ss_pred             EEEeecCCCCCCceEe
Q psy12526         79 CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm   94 (103)
                      .++-||..|+|||+.+
T Consensus        40 ~~ll~G~~G~GKT~l~   55 (226)
T 2chg_A           40 HLLFSGPPGTGKTATA   55 (226)
T ss_dssp             CEEEECSTTSSHHHHH
T ss_pred             eEEEECCCCCCHHHHH
Confidence            3888999999999854

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=91.26  E-value=0.16  Score=35.15  Aligned_cols=21  Identities=10%  Similarity=0.020  Sum_probs=17.4

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ......|+-||++|+|||+..
T Consensus        61 ~~~~~~vLl~G~~GtGKT~la   81 (272)
T 1d2n_A           61 RTPLVSVLLEGPPHSGKTALA   81 (272)
T ss_dssp             SCSEEEEEEECSTTSSHHHHH
T ss_pred             CCCCeEEEEECCCCCcHHHHH
Confidence            556678999999999999854

>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A

Probab=91.11  E-value=0.14  Score=33.70  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=17.2

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.+  ++..++||||||.+
T Consensus        32 i~~~~~~~~--~li~~~TGsGKT~~   54 (207)
T 2gxq_A           32 LPLALEGKD--LIGQARTGTGKTLA   54 (207)
T ss_dssp             HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHcCCCC--EEEECCCCChHHHH
Confidence            345567777  45678999999975

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=91.03  E-value=0.063  Score=34.65  Aligned_cols=17  Identities=29%  Similarity=0.661  Sum_probs=13.6

Q ss_pred             EEEeecCCCCCCceEec
Q psy12526         79 CIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm~   95 (103)
                      .++-+|.+|+|||+.+.
T Consensus        38 ~~~l~G~~G~GKTtL~~   54 (149)
T 2kjq_A           38 FIYVWGEEGAGKSHLLQ   54 (149)
T ss_dssp             EEEEESSSTTTTCHHHH
T ss_pred             EEEEECCCCCCHHHHHH
Confidence            45569999999998653

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=90.82  E-value=0.17  Score=33.68  Aligned_cols=19  Identities=16%  Similarity=0.272  Sum_probs=15.4

Q ss_pred             CcEEEEeecCCCCCCceEe
Q psy12526         76 YNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        76 ~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -...++-||+.|+|||+.+
T Consensus        51 ~~~~~ll~G~~G~GKT~la   69 (242)
T 3bos_A           51 GVQAIYLWGPVKSGRTHLI   69 (242)
T ss_dssp             SCSEEEEECSTTSSHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHH
Confidence            4456788999999999864

>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}

Probab=90.79  E-value=0.15  Score=34.68  Aligned_cols=23  Identities=17%  Similarity=0.310  Sum_probs=17.9

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.+  ++..++||||||.+
T Consensus        60 i~~~~~~~~--~l~~a~TGsGKT~~   82 (245)
T 3dkp_A           60 IPVMLHGRE--LLASAPTGSGKTLA   82 (245)
T ss_dssp             HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHhCCCC--EEEECCCCCcHHHH
Confidence            455677877  56789999999975

>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*

Probab=90.73  E-value=0.077  Score=36.17  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=18.3

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..+++|.|  ++..++||||||.+
T Consensus        60 ai~~i~~~~~--~li~apTGsGKT~~   83 (237)
T 3bor_A           60 AIIPCIKGYD--VIAQAQSGTGKTAT   83 (237)
T ss_dssp             HHHHHHTTCC--EEECCCSSHHHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCCcHHHH
Confidence            3455677877  56789999999975

>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*

Probab=90.28  E-value=0.19  Score=34.63  Aligned_cols=17  Identities=12%  Similarity=0.319  Sum_probs=13.9

Q ss_pred             EEEEeecCCCCCCceEe
Q psy12526         78 ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm   94 (103)
                      ..|+-||++|+|||+..
T Consensus        30 ~~vll~G~~GtGKt~la   46 (265)
T 2bjv_A           30 KPVLIIGERGTGKELIA   46 (265)
T ss_dssp             SCEEEECCTTSCHHHHH
T ss_pred             CCEEEECCCCCcHHHHH
Confidence            45777999999999754

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=90.18  E-value=0.091  Score=38.88  Aligned_cols=26  Identities=15%  Similarity=0.147  Sum_probs=18.1

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..++.--...+.--|.||||||.+|.
T Consensus       116 ~~l~~~~~g~i~I~GptGSGKTTlL~  141 (356)
T 3jvv_A          116 KRVSDVPRGLVLVTGPTGSGKSTTLA  141 (356)
T ss_dssp             HHHHHCSSEEEEEECSTTSCHHHHHH
T ss_pred             HHHHhCCCCEEEEECCCCCCHHHHHH
Confidence            33333334577788999999998763

>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}

Probab=90.04  E-value=0.19  Score=33.95  Aligned_cols=23  Identities=22%  Similarity=0.388  Sum_probs=17.4

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.+  ++..++||||||.+
T Consensus        56 i~~~~~~~~--~li~a~TGsGKT~~   78 (236)
T 2pl3_A           56 IGLALQGKD--VLGAAKTGSGKTLA   78 (236)
T ss_dssp             HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHhCCCC--EEEEeCCCCcHHHH
Confidence            455677877  45678999999975

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=89.86  E-value=0.26  Score=31.07  Aligned_cols=17  Identities=18%  Similarity=0.362  Sum_probs=13.6

Q ss_pred             cEEEEeecCCCCCCceE
Q psy12526         77 NACIFAYGQTGEKTNYL   93 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~T   93 (103)
                      +..|+-||++|+|||+.
T Consensus        24 ~~~vll~G~~GtGKt~l   40 (145)
T 3n70_A           24 DIAVWLYGAPGTGRMTG   40 (145)
T ss_dssp             CSCEEEESSTTSSHHHH
T ss_pred             CCCEEEECCCCCCHHHH
Confidence            34467899999999874

>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19

Probab=89.84  E-value=0.2  Score=34.24  Aligned_cols=23  Identities=17%  Similarity=0.219  Sum_probs=17.0

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|+  +..++||||||.+
T Consensus        54 i~~i~~~~~~--l~~a~TGsGKT~~   76 (253)
T 1wrb_A           54 IPAILEHRDI--MACAQTGSGKTAA   76 (253)
T ss_dssp             HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred             HHHHhCCCCE--EEECCCCChHHHH
Confidence            3455778774  5678999999974

>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}

Probab=89.76  E-value=0.22  Score=35.91  Aligned_cols=25  Identities=20%  Similarity=0.380  Sum_probs=19.4

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      ..+..+++|.+  ++..++||||||.+
T Consensus        69 ~~i~~~~~~~~--~lv~a~TGsGKT~~   93 (414)
T 3eiq_A           69 RAILPCIKGYD--VIAQAQSGTGKTAT   93 (414)
T ss_dssp             HHHHHHHTTCC--EEECCCSCSSSHHH
T ss_pred             HHhHHHhCCCC--EEEECCCCCcccHH
Confidence            34566778888  56789999999975

>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}

Probab=89.70  E-value=0.21  Score=33.55  Aligned_cols=23  Identities=22%  Similarity=0.237  Sum_probs=17.4

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|+  +..++||||||.+
T Consensus        51 i~~~~~~~~~--l~~apTGsGKT~~   73 (228)
T 3iuy_A           51 WPIILQGIDL--IVVAQTGTGKTLS   73 (228)
T ss_dssp             HHHHHTTCCE--EEECCTTSCHHHH
T ss_pred             HHHHhCCCCE--EEECCCCChHHHH
Confidence            4556788775  5678999999964

>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}

Probab=89.67  E-value=0.15  Score=34.83  Aligned_cols=24  Identities=25%  Similarity=0.221  Sum_probs=16.7

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      ++..+.+|-+  ++..|+||||||..
T Consensus        69 ~i~~i~~g~~--~~i~g~TGsGKTt~   92 (235)
T 3llm_A           69 ILEAISQNSV--VIIRGATGCGKTTQ   92 (235)
T ss_dssp             HHHHHHHCSE--EEEECCTTSSHHHH
T ss_pred             HHHHHhcCCE--EEEEeCCCCCcHHh
Confidence            3444556654  45689999999963

>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}

Probab=89.64  E-value=0.11  Score=36.12  Aligned_cols=24  Identities=17%  Similarity=0.333  Sum_probs=17.7

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..+++|.|  ++..++||||||.+
T Consensus        84 ~i~~~~~~~~--~lv~a~TGsGKT~~  107 (262)
T 3ly5_A           84 SIRPLLEGRD--LLAAAKTGSGKTLA  107 (262)
T ss_dssp             HHHHHHHTCC--CEECCCTTSCHHHH
T ss_pred             HHHHHhCCCc--EEEEccCCCCchHH
Confidence            3445566766  56789999999965

>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}

Probab=89.54  E-value=0.052  Score=35.82  Aligned_cols=23  Identities=26%  Similarity=0.307  Sum_probs=16.5

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..+++|.+  ++..++||+|||.+.
T Consensus        43 ~~~~~~~~--~li~~~tGsGKT~~~   65 (216)
T 3b6e_A           43 QPALEGKN--IIICLPTGSGKTRVA   65 (216)
T ss_dssp             HHHHTTCC--EEEECSCHHHHHHHH
T ss_pred             HHHhcCCC--EEEEcCCCCCHHHHH
Confidence            34456666  456899999999754

>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}

Probab=89.46  E-value=0.21  Score=31.50  Aligned_cols=16  Identities=19%  Similarity=0.343  Sum_probs=13.1

Q ss_pred             EEEeecCCCCCCceEe
Q psy12526         79 CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm   94 (103)
                      .|+-||++|+|||+..
T Consensus        29 ~vll~G~~GtGKt~lA   44 (143)
T 3co5_A           29 PVFLTGEAGSPFETVA   44 (143)
T ss_dssp             CEEEEEETTCCHHHHH
T ss_pred             cEEEECCCCccHHHHH
Confidence            4667999999999754

>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19

Probab=89.35  E-value=0.23  Score=33.06  Aligned_cols=23  Identities=13%  Similarity=0.354  Sum_probs=17.2

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|  ++...+||||||.+
T Consensus        45 i~~~~~~~~--~li~~~TGsGKT~~   67 (220)
T 1t6n_A           45 IPQAILGMD--VLCQAKSGMGKTAV   67 (220)
T ss_dssp             HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHhCCCC--EEEECCCCCchhhh
Confidence            455677877  45677999999974

>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}

Probab=89.22  E-value=0.18  Score=35.97  Aligned_cols=26  Identities=15%  Similarity=0.073  Sum_probs=18.6

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..++.|-.-.+++.++||||||..
T Consensus       122 ai~~il~~~~~~~l~~a~TGsGKT~a  147 (300)
T 3fmo_B          122 ALPLMLAEPPQNLIAQSQSGTGKTAA  147 (300)
T ss_dssp             HHHHHTSSSCCCEEEECCTTSSHHHH
T ss_pred             HHHHHHcCCCCeEEEECCCCCCccHH
Confidence            35566777333467899999999965

>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}

Probab=89.15  E-value=0.21  Score=37.29  Aligned_cols=26  Identities=15%  Similarity=0.073  Sum_probs=19.9

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..+++|-+-.++..++||||||..
T Consensus       122 ai~~il~~~~~~~l~~a~TGsGKT~~  147 (479)
T 3fmp_B          122 ALPLMLAEPPQNLIAQSQSGTGKTAA  147 (479)
T ss_dssp             HHHHHTSBSCCEEEEECCSSSSHHHH
T ss_pred             HHHHHHcCCCCcEEEEcCCCCchhHH
Confidence            45566777555678899999999965

>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*

Probab=89.10  E-value=0.27  Score=35.25  Aligned_cols=38  Identities=21%  Similarity=0.183  Sum_probs=24.4

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCcE--EEEeecCCCCCCceEe
Q psy12526         56 SQEKVFDALGRDILDNAFQGYNA--CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        56 ~q~~v~~~~~~~lv~~~~~G~n~--ti~aYGqtgSGKT~Tm   94 (103)
                      .|+.+-..+ ..++..+..|...  .++-||++|+|||+..
T Consensus        48 G~~~~~~~l-~~l~~~~~~~~~~~~~vLl~GppGtGKT~la   87 (368)
T 3uk6_A           48 GQLAARRAA-GVVLEMIREGKIAGRAVLIAGQPGTGKTAIA   87 (368)
T ss_dssp             SCHHHHHHH-HHHHHHHHTTCCTTCEEEEEESTTSSHHHHH
T ss_pred             ChHHHHHHH-HHHHHHHHcCCCCCCEEEEECCCCCCHHHHH
Confidence            344444332 3455555566543  7888999999999754

>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}

Probab=89.00  E-value=0.18  Score=38.82  Aligned_cols=28  Identities=14%  Similarity=0.213  Sum_probs=18.8

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+++.+.+|.+-.+++ +.||||||.+++
T Consensus       189 ~~~~~~~~~~~~~ll~-~~TGsGKT~~~~  216 (590)
T 3h1t_A          189 RAVQSVLQGKKRSLIT-MATGTGKTVVAF  216 (590)
T ss_dssp             HHHHHHHTTCSEEEEE-ECTTSCHHHHHH
T ss_pred             HHHHHHhcCCCceEEE-ecCCCChHHHHH
Confidence            3344455576655544 899999998853

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=88.66  E-value=0.31  Score=34.93  Aligned_cols=39  Identities=18%  Similarity=0.223  Sum_probs=24.8

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCC-cE--EEEeecCCCCCCceEe
Q psy12526         55 ASQEKVFDALGRDILDNAFQGY-NA--CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~G~-n~--ti~aYGqtgSGKT~Tm   94 (103)
                      ..++...+.+. ..+...+.|- ..  .++-||..|+|||..+
T Consensus        20 ~gr~~~~~~l~-~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~   61 (389)
T 1fnn_A           20 PHREQQLQQLD-ILLGNWLRNPGHHYPRATLLGRPGTGKTVTL   61 (389)
T ss_dssp             TTCHHHHHHHH-HHHHHHHHSTTSSCCEEEEECCTTSSHHHHH
T ss_pred             CChHHHHHHHH-HHHHHHHcCCCCCCCeEEEECCCCCCHHHHH
Confidence            34555555554 3444544443 33  6788999999999865

>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=88.61  E-value=0.26  Score=35.37  Aligned_cols=39  Identities=10%  Similarity=0.137  Sum_probs=25.6

Q ss_pred             CCHHHHHHHHHHHHHHHhhCC-CcEEEEeecCCCCCCceEe
Q psy12526         55 ASQEKVFDALGRDILDNAFQG-YNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~G-~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..++...+.+. ..+..++.+ ....|+-||..|+|||..+
T Consensus        23 ~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~la   62 (384)
T 2qby_B           23 PFREDILRDAA-IAIRYFVKNEVKFSNLFLGLTGTGKTFVS   62 (384)
T ss_dssp             TTCHHHHHHHH-HHHHHHHTTCCCCEEEEEECTTSSHHHHH
T ss_pred             CChHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            34555565554 344554443 3457889999999999754

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=88.60  E-value=0.19  Score=38.89  Aligned_cols=23  Identities=17%  Similarity=0.232  Sum_probs=17.2

Q ss_pred             HhhCCCcEEEEeecCCCCCCceEec
Q psy12526         71 NAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        71 ~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      .+-.|.+  +.--|.||||||.+|.
T Consensus       256 ~v~~g~~--i~I~GptGSGKTTlL~  278 (511)
T 2oap_1          256 AIEHKFS--AIVVGETASGKTTTLN  278 (511)
T ss_dssp             HHHTTCC--EEEEESTTSSHHHHHH
T ss_pred             HHhCCCE--EEEECCCCCCHHHHHH
Confidence            3456777  4568999999998753

>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*

Probab=88.59  E-value=0.28  Score=33.10  Aligned_cols=23  Identities=9%  Similarity=0.173  Sum_probs=17.2

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|+  +...+||||||.+
T Consensus        55 i~~~~~~~~~--l~~a~TGsGKT~~   77 (230)
T 2oxc_A           55 IPLGRCGLDL--IVQAKSGTGKTCV   77 (230)
T ss_dssp             HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred             HHHHhCCCCE--EEECCCCCcHHHH
Confidence            3456778774  4578999999975

>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}

Probab=88.46  E-value=0.044  Score=39.26  Aligned_cols=39  Identities=21%  Similarity=0.307  Sum_probs=24.2

Q ss_pred             CCHHHHHHHHHHHHHHHhh-CCCcEEEEeecCCCCCCceEe
Q psy12526         55 ASQEKVFDALGRDILDNAF-QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~-~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..++...+.+. ..+..++ .+-...++-||++|+|||+.+
T Consensus        22 ~gr~~~~~~l~-~~l~~~~~~~~~~~vll~G~~G~GKT~l~   61 (387)
T 2v1u_A           22 PHREAELRRLA-EVLAPALRGEKPSNALLYGLTGTGKTAVA   61 (387)
T ss_dssp             TTCHHHHHHHH-HTTGGGTSSCCCCCEEECBCTTSSHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHHcCCCCCcEEEECCCCCCHHHHH
Confidence            34555555543 2333333 334456888999999999764

>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}

Probab=88.43  E-value=0.28  Score=33.76  Aligned_cols=24  Identities=21%  Similarity=0.264  Sum_probs=17.4

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..+++|.++  +..++||||||.+
T Consensus        73 ~i~~i~~~~~~--lv~a~TGsGKT~~   96 (249)
T 3ber_A           73 AIPLALQGRDI--IGLAETGSGKTGA   96 (249)
T ss_dssp             HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred             HHHHHhCCCCE--EEEcCCCCCchhH
Confidence            34556778774  4577999999975

>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A

Probab=87.63  E-value=0.29  Score=33.30  Aligned_cols=22  Identities=23%  Similarity=0.292  Sum_probs=16.1

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceE
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      ..+++|.|+  +..++||||||.+
T Consensus        61 ~~~~~g~~~--l~~apTGsGKT~~   82 (242)
T 3fe2_A           61 PVALSGLDM--VGVAQTGSGKTLS   82 (242)
T ss_dssp             HHHHHTCCE--EEEECTTSCHHHH
T ss_pred             HHHhCCCCE--EEECCCcCHHHHH
Confidence            445677774  4567999999975

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=87.55  E-value=0.1  Score=35.86  Aligned_cols=15  Identities=20%  Similarity=0.315  Sum_probs=13.3

Q ss_pred             EEeecCCCCCCceEe
Q psy12526         80 IFAYGQTGEKTNYLL   94 (103)
Q Consensus        80 i~aYGqtgSGKT~Tm   94 (103)
                      ++-||++|+|||+.+
T Consensus        52 ~ll~G~~G~GKTtl~   66 (254)
T 1ixz_A           52 VLLVGPPGVGKTHLA   66 (254)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            788999999999864

>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A

Probab=87.49  E-value=0.34  Score=35.08  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=18.2

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..+++|.+  ++..++||||||.+
T Consensus        67 ai~~i~~~~~--~lv~a~TGsGKT~~   90 (410)
T 2j0s_A           67 AIKQIIKGRD--VIAQSQSGTGKTAT   90 (410)
T ss_dssp             HHHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             HHHHHhCCCC--EEEECCCCCCchHH
Confidence            3455678877  45688999999964

>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*

Probab=87.19  E-value=0.42  Score=35.95  Aligned_cols=38  Identities=18%  Similarity=0.134  Sum_probs=25.1

Q ss_pred             CHHHHHHHHHHHHHHHhhCCCc--EEEEeecCCCCCCceEe
Q psy12526         56 SQEKVFDALGRDILDNAFQGYN--ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        56 ~q~~v~~~~~~~lv~~~~~G~n--~ti~aYGqtgSGKT~Tm   94 (103)
                      .|+++-+.+ ..+++.+..|..  ..++-||++|+|||+..
T Consensus        41 G~~~~~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~la   80 (456)
T 2c9o_A           41 GQENAREAC-GVIVELIKSKKMAGRAVLLAGPPGTGKTALA   80 (456)
T ss_dssp             SCHHHHHHH-HHHHHHHHTTCCTTCEEEEECCTTSSHHHHH
T ss_pred             CHHHHHHHH-HHHHHHHHhCCCCCCeEEEECCCcCCHHHHH
Confidence            556665544 345566666643  35777999999999743

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=86.98  E-value=0.58  Score=32.66  Aligned_cols=19  Identities=11%  Similarity=0.046  Sum_probs=15.3

Q ss_pred             CcEEEEeecCCCCCCceEe
Q psy12526         76 YNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        76 ~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -...|+-||.+|+|||+..
T Consensus        66 ~~~~vll~G~~GtGKT~la   84 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVA   84 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH
Confidence            3446888999999999865

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=86.91  E-value=0.21  Score=35.15  Aligned_cols=18  Identities=22%  Similarity=0.302  Sum_probs=14.3

Q ss_pred             cEEEEeecCCCCCCceEe
Q psy12526         77 NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...+.-.|+||||||.+|
T Consensus        25 g~~v~i~Gp~GsGKSTll   42 (261)
T 2eyu_A           25 MGLILVTGPTGSGKSTTI   42 (261)
T ss_dssp             SEEEEEECSTTCSHHHHH
T ss_pred             CCEEEEECCCCccHHHHH
Confidence            345667899999999865

>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B

Probab=86.55  E-value=0.32  Score=34.95  Aligned_cols=26  Identities=15%  Similarity=0.073  Sum_probs=18.4

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..+++|.+-.++..++||||||..
T Consensus        55 ~i~~~~~~~~~~~lv~apTGsGKT~~   80 (412)
T 3fht_A           55 ALPLMLAEPPQNLIAQSQSGTGKTAA   80 (412)
T ss_dssp             HHHHHHSSSCCCEEEECCTTSCHHHH
T ss_pred             HHHHHhcCCCCeEEEECCCCchHHHH
Confidence            34556676334466789999999975

>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*

Probab=86.31  E-value=0.36  Score=35.23  Aligned_cols=22  Identities=18%  Similarity=0.140  Sum_probs=17.0

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCce
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNY   92 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~   92 (103)
                      +..+++|.|  ++..++||||||.
T Consensus        30 i~~i~~~~~--~lv~apTGsGKT~   51 (414)
T 3oiy_A           30 AKRIVQGKS--FTMVAPTGVGKTT   51 (414)
T ss_dssp             HHHHTTTCC--EECCSCSSSSHHH
T ss_pred             HHHHhcCCC--EEEEeCCCCCHHH
Confidence            445567776  5678999999997

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=86.23  E-value=0.29  Score=35.12  Aligned_cols=15  Identities=20%  Similarity=0.499  Sum_probs=13.1

Q ss_pred             EEeecCCCCCCceEe
Q psy12526         80 IFAYGQTGEKTNYLL   94 (103)
Q Consensus        80 i~aYGqtgSGKT~Tm   94 (103)
                      ++-||+.|+|||+++
T Consensus        49 ~ll~Gp~G~GKTtla   63 (340)
T 1sxj_C           49 LLFYGPPGTGKTSTI   63 (340)
T ss_dssp             EEEECSSSSSHHHHH
T ss_pred             EEEECCCCCCHHHHH
Confidence            677999999999865

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=86.09  E-value=0.47  Score=32.78  Aligned_cols=18  Identities=28%  Similarity=0.457  Sum_probs=14.5

Q ss_pred             cEEEEeecCCCCCCceEe
Q psy12526         77 NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...|+-||..|+|||+.+
T Consensus        51 ~~~~ll~G~~GtGKT~la   68 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLA   68 (285)
T ss_dssp             CSEEEEESSSSSSHHHHH
T ss_pred             CCeEEEECCCCCcHHHHH
Confidence            345788999999999754

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=86.08  E-value=0.14  Score=36.50  Aligned_cols=49  Identities=18%  Similarity=0.340  Sum_probs=27.3

Q ss_pred             ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..|+||....        ...+...+.. +..++..--. ....++-||.+|+|||+.+
T Consensus         6 ~~~~f~~fv~--------g~~~~~a~~~-~~~~~~~~~~-~~~~lll~G~~GtGKT~la   54 (324)
T 1l8q_A            6 PKYTLENFIV--------GEGNRLAYEV-VKEALENLGS-LYNPIFIYGSVGTGKTHLL   54 (324)
T ss_dssp             TTCCSSSCCC--------CTTTHHHHHH-HHHHHHTTTT-SCSSEEEECSSSSSHHHHH
T ss_pred             CCCCcccCCC--------CCcHHHHHHH-HHHHHhCcCC-CCCeEEEECCCCCcHHHHH
Confidence            3466776542        2244445544 3334433211 2235778999999999865

>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19

Probab=86.01  E-value=0.21  Score=33.38  Aligned_cols=22  Identities=23%  Similarity=0.256  Sum_probs=16.2

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceE
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      ..+++|.|+  +..++||||||.+
T Consensus        36 ~~~~~~~~~--lv~a~TGsGKT~~   57 (219)
T 1q0u_A           36 PGALRGESM--VGQSQTGTGKTHA   57 (219)
T ss_dssp             HHHHHTCCE--EEECCSSHHHHHH
T ss_pred             HHHhCCCCE--EEECCCCChHHHH
Confidence            445567664  5678999999975

>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*

Probab=85.98  E-value=0.3  Score=33.52  Aligned_cols=16  Identities=19%  Similarity=0.337  Sum_probs=13.6

Q ss_pred             EEEeecCCCCCCceEe
Q psy12526         79 CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm   94 (103)
                      .|+-||++|+|||+.+
T Consensus        46 ~vll~G~~GtGKT~la   61 (268)
T 2r62_A           46 GVLLVGPPGTGKTLLA   61 (268)
T ss_dssp             CCCCBCSSCSSHHHHH
T ss_pred             eEEEECCCCCcHHHHH
Confidence            4788999999999864

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=85.86  E-value=0.3  Score=31.97  Aligned_cols=17  Identities=12%  Similarity=0.141  Sum_probs=14.2

Q ss_pred             EEEEeecCCCCCCceEe
Q psy12526         78 ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm   94 (103)
                      ..++-||..|+|||+.+
T Consensus        46 ~~~ll~G~~G~GKT~l~   62 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIA   62 (250)
T ss_dssp             SEEEEECSTTSCHHHHH
T ss_pred             eEEEEECCCCCCHHHHH
Confidence            36788999999999754

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=85.67  E-value=0.92  Score=32.15  Aligned_cols=31  Identities=26%  Similarity=0.278  Sum_probs=20.8

Q ss_pred             HHHHHHHHHhhCCC-----cEEEEeecCCCCCCceE
Q psy12526         63 ALGRDILDNAFQGY-----NACIFAYGQTGEKTNYL   93 (103)
Q Consensus        63 ~~~~~lv~~~~~G~-----n~ti~aYGqtgSGKT~T   93 (103)
                      .+...++..++.++     ...|+-.|.+|||||+.
T Consensus        14 ~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTl   49 (287)
T 1gvn_B           14 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSL   49 (287)
T ss_dssp             HHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHH
T ss_pred             HHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHH
Confidence            34445555655543     35678889999999864

>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A

Probab=85.47  E-value=0.57  Score=35.60  Aligned_cols=26  Identities=12%  Similarity=0.235  Sum_probs=19.1

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..++.+-+-.++..++||||||..
T Consensus       102 ~i~~~l~~~~~~~lv~apTGsGKTl~  127 (563)
T 3i5x_A          102 TIKPILSSEDHDVIARAKTGTGKTFA  127 (563)
T ss_dssp             HHHHHHSSSSEEEEEECCTTSCHHHH
T ss_pred             HHHHHhcCCCCeEEEECCCCCCccHH
Confidence            44556655455678899999999974

>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G

Probab=85.33  E-value=0.37  Score=34.15  Aligned_cols=17  Identities=12%  Similarity=0.417  Sum_probs=14.0

Q ss_pred             EEEEeecCCCCCCceEe
Q psy12526         78 ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm   94 (103)
                      .-|+-||.+|+|||+.+
T Consensus        46 ~~vLl~G~~GtGKT~la   62 (350)
T 1g8p_A           46 GGVLVFGDRGTGKSTAV   62 (350)
T ss_dssp             CCEEEECCGGGCTTHHH
T ss_pred             ceEEEECCCCccHHHHH
Confidence            34888999999999854

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=85.16  E-value=0.26  Score=33.54  Aligned_cols=18  Identities=17%  Similarity=0.170  Sum_probs=14.8

Q ss_pred             cEEEEeecCCCCCCceEe
Q psy12526         77 NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...|+-||+.|+|||+.+
T Consensus        39 ~~~vll~G~~GtGKT~la   56 (262)
T 2qz4_A           39 PKGALLLGPPGCGKTLLA   56 (262)
T ss_dssp             CCEEEEESCTTSSHHHHH
T ss_pred             CceEEEECCCCCCHHHHH
Confidence            446889999999999854

>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19

Probab=85.04  E-value=0.41  Score=32.88  Aligned_cols=23  Identities=9%  Similarity=-0.090  Sum_probs=16.3

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..++++.+  ++..|.||+|||+..
T Consensus       103 ~~~~~~~~--~ll~~~tG~GKT~~a  125 (237)
T 2fz4_A          103 ERWLVDKR--GCIVLPTGSGKTHVA  125 (237)
T ss_dssp             HHHTTTSE--EEEEESSSTTHHHHH
T ss_pred             HHHHhCCC--EEEEeCCCCCHHHHH
Confidence            34556655  556789999999864

>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}

Probab=84.94  E-value=0.53  Score=34.94  Aligned_cols=23  Identities=22%  Similarity=0.268  Sum_probs=17.6

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.+  +++.++||||||..
T Consensus        87 i~~i~~g~d--~i~~a~TGsGKT~a  109 (434)
T 2db3_A           87 IPVISSGRD--LMACAQTGSGKTAA  109 (434)
T ss_dssp             HHHHHTTCC--EEEECCTTSSHHHH
T ss_pred             HHHHhcCCC--EEEECCCCCCchHH
Confidence            445678877  46788999999974

>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A

Probab=84.90  E-value=0.43  Score=34.35  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=16.6

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.+  ++..++||||||..
T Consensus        52 i~~i~~~~~--~li~a~TGsGKT~~   74 (400)
T 1s2m_A           52 IPVAITGRD--ILARAKNGTGKTAA   74 (400)
T ss_dssp             HHHHHHTCC--EEEECCTTSCHHHH
T ss_pred             HHHHhcCCC--EEEECCCCcHHHHH
Confidence            344556766  55688999999964

>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*

Probab=84.90  E-value=0.43  Score=33.93  Aligned_cols=25  Identities=16%  Similarity=0.105  Sum_probs=17.2

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|-.-.++..++||||||..
T Consensus        36 i~~~~~~~~~~~lv~a~TGsGKT~~   60 (395)
T 3pey_A           36 LPLLLHNPPRNMIAQSQSGTGKTAA   60 (395)
T ss_dssp             HHHHHCSSCCCEEEECCTTSCHHHH
T ss_pred             HHHHHcCCCCeEEEECCCCCcHHHH
Confidence            4455666323456789999999974

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=84.89  E-value=0.17  Score=35.37  Aligned_cols=15  Identities=20%  Similarity=0.315  Sum_probs=13.3

Q ss_pred             EEeecCCCCCCceEe
Q psy12526         80 IFAYGQTGEKTNYLL   94 (103)
Q Consensus        80 i~aYGqtgSGKT~Tm   94 (103)
                      |+-||++|+|||+.+
T Consensus        76 vll~Gp~GtGKTtl~   90 (278)
T 1iy2_A           76 VLLVGPPGVGKTHLA   90 (278)
T ss_dssp             EEEECCTTSSHHHHH
T ss_pred             EEEECCCcChHHHHH
Confidence            788999999999864

>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}

Probab=84.57  E-value=0.58  Score=33.78  Aligned_cols=23  Identities=17%  Similarity=0.105  Sum_probs=17.3

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|+  +..++||||||.+
T Consensus        46 i~~i~~~~~~--lv~a~TGsGKT~~   68 (417)
T 2i4i_A           46 IPIIKEKRDL--MACAQTGSGKTAA   68 (417)
T ss_dssp             HHHHHTTCCE--EEECCTTSCHHHH
T ss_pred             HHHHccCCCE--EEEcCCCCHHHHH
Confidence            3455778774  5688999999964

>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}

Probab=84.44  E-value=0.61  Score=32.43  Aligned_cols=23  Identities=22%  Similarity=0.255  Sum_probs=16.4

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..+++|.+  ++..++||+|||...
T Consensus        26 ~~i~~~~~--~lv~~~TGsGKT~~~   48 (337)
T 2z0m_A           26 PLMLQGKN--VVVRAKTGSGKTAAY   48 (337)
T ss_dssp             HHHHTTCC--EEEECCTTSSHHHHH
T ss_pred             HHHhcCCC--EEEEcCCCCcHHHHH
Confidence            34556766  446789999999643

>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20

Probab=84.25  E-value=0.4  Score=33.42  Aligned_cols=36  Identities=17%  Similarity=0.185  Sum_probs=22.2

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..|+++.+.+. ..+   -.|....++-||+.|+|||+..
T Consensus        28 ~g~~~~~~~l~-~~l---~~~~~~~~ll~G~~G~GKT~la   63 (327)
T 1iqp_A           28 VGQEHIVKRLK-HYV---KTGSMPHLLFAGPPGVGKTTAA   63 (327)
T ss_dssp             CSCHHHHHHHH-HHH---HHTCCCEEEEESCTTSSHHHHH
T ss_pred             hCCHHHHHHHH-HHH---HcCCCCeEEEECcCCCCHHHHH
Confidence            35665555443 233   2343334888999999999754

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=83.94  E-value=0.3  Score=34.64  Aligned_cols=27  Identities=11%  Similarity=0.182  Sum_probs=17.9

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      +...+..|-...++-||+.|+|||+.+
T Consensus        49 l~~~l~~~~~~~~ll~G~~G~GKT~la   75 (353)
T 1sxj_D           49 LKKTLKSANLPHMLFYGPPGTGKTSTI   75 (353)
T ss_dssp             HHHHTTCTTCCCEEEECSTTSSHHHHH
T ss_pred             HHHHHhcCCCCEEEEECCCCCCHHHHH
Confidence            334444553223788999999999754

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=83.61  E-value=0.41  Score=35.39  Aligned_cols=19  Identities=21%  Similarity=0.249  Sum_probs=15.3

Q ss_pred             CcEEEEeecCCCCCCceEe
Q psy12526         76 YNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        76 ~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -...+.--|.||||||.+|
T Consensus       135 ~g~~i~ivG~~GsGKTTll  153 (372)
T 2ewv_A          135 KMGLILVTGPTGSGKSTTI  153 (372)
T ss_dssp             SSEEEEEECSSSSSHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHH
Confidence            3456777899999999876

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=83.33  E-value=0.3  Score=33.44  Aligned_cols=18  Identities=17%  Similarity=0.285  Sum_probs=14.5

Q ss_pred             cEEEEeecCCCCCCceEe
Q psy12526         77 NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...|+-||++|+|||+.+
T Consensus        45 ~~~vll~G~~GtGKT~la   62 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLA   62 (257)
T ss_dssp             CCEEEEECCTTSCHHHHH
T ss_pred             CCeEEEECcCCCCHHHHH
Confidence            335889999999999753

>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*

Probab=83.04  E-value=0.92  Score=35.51  Aligned_cols=23  Identities=17%  Similarity=0.306  Sum_probs=17.5

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.+  +++..+||+|||..
T Consensus        53 i~~il~g~d--~lv~~pTGsGKTl~   75 (591)
T 2v1x_A           53 INVTMAGKE--VFLVMPTGGGKSLC   75 (591)
T ss_dssp             HHHHHTTCC--EEEECCTTSCTTHH
T ss_pred             HHHHHcCCC--EEEEECCCChHHHH
Confidence            445567877  56788999999964

>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}

Probab=83.01  E-value=0.41  Score=34.02  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=20.9

Q ss_pred             CCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         55 ASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..|+++-..+.    ..+..|.+  |+-||..|+|||+.+
T Consensus        30 ~g~~~~~~~l~----~~l~~~~~--vll~G~pGtGKT~la   63 (331)
T 2r44_A           30 VGQKYMINRLL----IGICTGGH--ILLEGVPGLAKTLSV   63 (331)
T ss_dssp             CSCHHHHHHHH----HHHHHTCC--EEEESCCCHHHHHHH
T ss_pred             eCcHHHHHHHH----HHHHcCCe--EEEECCCCCcHHHHH
Confidence            34555544433    33344544  667999999999754

>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*

Probab=83.01  E-value=0.22  Score=37.48  Aligned_cols=17  Identities=35%  Similarity=0.571  Sum_probs=14.4

Q ss_pred             EEEeecCCCCCCceEec
Q psy12526         79 CIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm~   95 (103)
                      .++-||.+|+|||+.+.
T Consensus       132 ~lll~Gp~G~GKTtLa~  148 (440)
T 2z4s_A          132 PLFIYGGVGLGKTHLLQ  148 (440)
T ss_dssp             CEEEECSSSSSHHHHHH
T ss_pred             eEEEECCCCCCHHHHHH
Confidence            57789999999998753

>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A

Probab=82.77  E-value=0.79  Score=32.68  Aligned_cols=25  Identities=12%  Similarity=0.337  Sum_probs=18.0

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+..+++|.+  ++..++||+|||...
T Consensus        38 ~i~~~~~~~~--~lv~a~TGsGKT~~~   62 (391)
T 1xti_A           38 CIPQAILGMD--VLCQAKSGMGKTAVF   62 (391)
T ss_dssp             HHHHHTTTCC--EEEECSSCSSHHHHH
T ss_pred             HHHHHhcCCc--EEEECCCCCcHHHHH
Confidence            3455677877  455789999999753

>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9

Probab=82.69  E-value=0.76  Score=37.09  Aligned_cols=21  Identities=19%  Similarity=0.357  Sum_probs=18.7

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .++-|-||+.-|++|||||.+
T Consensus        90 ~~~~nQsIiisGESGAGKTe~  110 (697)
T 1lkx_A           90 QSQENQCVIISGESGAGKTEA  110 (697)
T ss_dssp             HHCCCEEEEEECSTTSSHHHH
T ss_pred             hcCCCcEEEecCCCCCCchhh
Confidence            368899999999999999964

>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*

Probab=82.57  E-value=0.75  Score=34.41  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=17.1

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|  ++...+||||||.+
T Consensus        16 i~~~~~~~~--~l~~~~tGsGKT~~   38 (556)
T 4a2p_A           16 AQPAINGKN--ALICAPTGSGKTFV   38 (556)
T ss_dssp             HHHHHTTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHcCCC--EEEEcCCCChHHHH
Confidence            445567877  45688999999965

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=82.57  E-value=0.14  Score=36.56  Aligned_cols=19  Identities=32%  Similarity=0.489  Sum_probs=15.2

Q ss_pred             CcEEEEeecCCCCCCceEe
Q psy12526         76 YNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        76 ~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -...++-||+.|+|||..+
T Consensus        44 ~~~~vli~G~~G~GKTtl~   62 (386)
T 2qby_A           44 KPNNIFIYGLTGTGKTAVV   62 (386)
T ss_dssp             CCCCEEEEECTTSSHHHHH
T ss_pred             CCCeEEEECCCCCCHHHHH
Confidence            3456788999999999754

>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}

Probab=82.48  E-value=0.84  Score=32.34  Aligned_cols=39  Identities=21%  Similarity=0.152  Sum_probs=24.5

Q ss_pred             CCHHHHHHHHHHHHHHHhh--CCCcEEEEeecCCCCCCceEe
Q psy12526         55 ASQEKVFDALGRDILDNAF--QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~--~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..++.+...+. .++..+.  ......|+-||++|+|||+..
T Consensus        32 iG~~~~~~~l~-~~l~~~~~~~~~~~~vll~G~~GtGKT~la   72 (338)
T 3pfi_A           32 IGQESIKKNLN-VFIAAAKKRNECLDHILFSGPAGLGKTTLA   72 (338)
T ss_dssp             CSCHHHHHHHH-HHHHHHHHTTSCCCCEEEECSTTSSHHHHH
T ss_pred             CChHHHHHHHH-HHHHHHHhcCCCCCeEEEECcCCCCHHHHH
Confidence            35555655543 4444443  233446888999999999754

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=82.44  E-value=0.27  Score=35.85  Aligned_cols=19  Identities=16%  Similarity=0.254  Sum_probs=15.4

Q ss_pred             CcEEEEeecCCCCCCceEe
Q psy12526         76 YNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        76 ~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ....|+-||++|+|||+.+
T Consensus       116 ~~~~vLl~GppGtGKT~la  134 (357)
T 3d8b_A          116 PPKGILLFGPPGTGKTLIG  134 (357)
T ss_dssp             CCSEEEEESSTTSSHHHHH
T ss_pred             CCceEEEECCCCCCHHHHH
Confidence            3456888999999999754

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=81.97  E-value=0.37  Score=33.44  Aligned_cols=17  Identities=24%  Similarity=0.284  Sum_probs=13.9

Q ss_pred             EEEEeecCCCCCCceEe
Q psy12526         78 ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm   94 (103)
                      ..++-||++|+|||+.+
T Consensus        51 ~~vll~G~~GtGKT~la   67 (310)
T 1ofh_A           51 KNILMIGPTGVGKTEIA   67 (310)
T ss_dssp             CCEEEECCTTSSHHHHH
T ss_pred             ceEEEECCCCCCHHHHH
Confidence            45778999999999754

>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*

Probab=81.93  E-value=0.83  Score=37.32  Aligned_cols=21  Identities=14%  Similarity=0.186  Sum_probs=18.5

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .++-|-||+.-|++|||||.+
T Consensus       136 ~~~~nQsIiiSGESGAGKTe~  156 (784)
T 2v26_A          136 VLKLSQSIIVSGESGAGKTEN  156 (784)
T ss_dssp             HHTCCEEEEEECSTTSSHHHH
T ss_pred             hcCCCcEEEEcCCCCCCceeh
Confidence            358899999999999999964

>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...

Probab=81.91  E-value=0.84  Score=37.29  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=18.7

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .++-|-||+.-|++|||||.+
T Consensus       168 ~~~~nQsIiisGESGAGKTe~  188 (770)
T 1w9i_A          168 DDRQNQSLLITGESGAGKTEN  188 (770)
T ss_dssp             HHCCCEEEEEECSTTSSHHHH
T ss_pred             hhcCCcEEEEecCCCCcchHH
Confidence            358899999999999999964

>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*

Probab=81.63  E-value=0.84  Score=35.56  Aligned_cols=23  Identities=22%  Similarity=0.303  Sum_probs=16.8

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|+  +..++||||||..
T Consensus        22 i~~~l~g~~~--iv~~~TGsGKTl~   44 (696)
T 2ykg_A           22 ALPAMKGKNT--IICAPTGCGKTFV   44 (696)
T ss_dssp             HHHHHTTCCE--EEECCTTSSHHHH
T ss_pred             HHHHHcCCCE--EEEcCCCchHHHH
Confidence            3445678774  5688999999963

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A

Probab=81.45  E-value=0.98  Score=38.24  Aligned_cols=21  Identities=14%  Similarity=0.185  Sum_probs=18.7

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .++-|-||+.-|.+|||||.+
T Consensus       165 ~~~~~Q~i~isGeSGaGKTe~  185 (1184)
T 1i84_S          165 QDREDQSILCTGESGAGKTEN  185 (1184)
T ss_dssp             HHTCCEEEECCCSTTSSTTHH
T ss_pred             hcCCCcEEEEecCCCCCccHH
Confidence            358899999999999999964

>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}

Probab=81.43  E-value=1  Score=34.60  Aligned_cols=26  Identities=12%  Similarity=0.235  Sum_probs=18.2

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..++.+-+--+++..+||||||..
T Consensus        51 ~i~~il~~~~~dvlv~apTGsGKTl~   76 (579)
T 3sqw_A           51 TIKPILSSEDHDVIARAKTGTGKTFA   76 (579)
T ss_dssp             HHHHHHCSSSEEEEEECCTTSCHHHH
T ss_pred             HHHHHHccCCCeEEEEcCCCcHHHHH
Confidence            34455644445577899999999974

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=81.37  E-value=1.7  Score=30.15  Aligned_cols=38  Identities=21%  Similarity=0.282  Sum_probs=23.7

Q ss_pred             CHHHHHHHHHHHHHHHhhCCC------cEEEEeecCCCCCCceEe
Q psy12526         56 SQEKVFDALGRDILDNAFQGY------NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        56 ~q~~v~~~~~~~lv~~~~~G~------n~ti~aYGqtgSGKT~Tm   94 (103)
                      .|+.+.+.+... +.....|.      ...++-+|++|+|||+..
T Consensus        21 G~~~~~~~l~~~-i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la   64 (311)
T 4fcw_A           21 GQDEAIRAVADA-IRRARAGLKDPNRPIGSFLFLGPTGVGKTELA   64 (311)
T ss_dssp             SCHHHHHHHHHH-HHHHHHTCSCTTSCSEEEEEESCSSSSHHHHH
T ss_pred             CHHHHHHHHHHH-HHHHhcCCCCCCCCceEEEEECCCCcCHHHHH
Confidence            566666555433 33332221      357888999999999754

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=81.19  E-value=1  Score=29.93  Aligned_cols=29  Identities=14%  Similarity=0.114  Sum_probs=17.4

Q ss_pred             HHHHHHhhC--CCcEEEEeecCCCCCCceEe
Q psy12526         66 RDILDNAFQ--GYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        66 ~~lv~~~~~--G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..+++.+.+  .-.-.|---|.+|||||..+
T Consensus         9 ~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~   39 (208)
T 3c8u_A            9 QGVLERLDPRQPGRQLVALSGAPGSGKSTLS   39 (208)
T ss_dssp             HHHHHHSCTTCCSCEEEEEECCTTSCTHHHH
T ss_pred             HHHHHHHHhcCCCCeEEEEECCCCCCHHHHH
Confidence            344444442  22334555799999999753

>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A

Probab=81.18  E-value=1  Score=32.22  Aligned_cols=27  Identities=7%  Similarity=0.133  Sum_probs=20.8

Q ss_pred             HHHHHhhCCC---cEEEEeecCCCCCCceE
Q psy12526         67 DILDNAFQGY---NACIFAYGQTGEKTNYL   93 (103)
Q Consensus        67 ~lv~~~~~G~---n~ti~aYGqtgSGKT~T   93 (103)
                      ..+...++|.   --||+-||+.|+|||+.
T Consensus        91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~  120 (267)
T 1u0j_A           91 SVFLGWATKKFGKRNTIWLFGPATTGKTNI  120 (267)
T ss_dssp             HHHHHHHTTCSTTCCEEEEECSTTSSHHHH
T ss_pred             HHHHHHHhCCCCCCcEEEEECCCCCCHHHH
Confidence            4466777776   34799999999999874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=81.12  E-value=0.53  Score=31.49  Aligned_cols=28  Identities=18%  Similarity=0.253  Sum_probs=19.1

Q ss_pred             HHHHHhhCC-C--cEEEEeecCCCCCCceEe
Q psy12526         67 DILDNAFQG-Y--NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~Tm   94 (103)
                      +-++.++.| +  ...+.-+|.+|+|||..+
T Consensus        11 ~~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~   41 (243)
T 1n0w_A           11 KELDKLLQGGIETGSITEMFGEFRTGKTQIC   41 (243)
T ss_dssp             HHHHHHTTTSEETTSEEEEECCTTSSHHHHH
T ss_pred             hHHHHhhcCCCcCCeEEEEECCCCCcHHHHH
Confidence            445666643 2  345667899999999864

>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}

Probab=80.96  E-value=1.3  Score=33.45  Aligned_cols=38  Identities=8%  Similarity=0.098  Sum_probs=22.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      -..++.....+    +..+...-...++-||.+|+|||+...
T Consensus       182 iiGr~~~i~~l----~~~l~r~~~~~~LL~G~pG~GKT~la~  219 (468)
T 3pxg_A          182 VIGRSKEIQRV----IEVLSRRTKNNPVLIGEPGVGKTAIAE  219 (468)
T ss_dssp             CCCCHHHHHHH----HHHHHCSSSCEEEEESCTTTTTHHHHH
T ss_pred             ccCcHHHHHHH----HHHHhccCCCCeEEECCCCCCHHHHHH
Confidence            34555444443    333333334456779999999998543

>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A

Probab=80.78  E-value=0.97  Score=37.01  Aligned_cols=21  Identities=19%  Similarity=0.235  Sum_probs=18.6

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .++-|-||+.-|++|||||.+
T Consensus       152 ~~~~nQsIiisGESGAGKTe~  172 (795)
T 1w7j_A          152 RDERNQSIIVSGESGAGKTVS  172 (795)
T ss_dssp             HHTCCEEEEEECSTTSSHHHH
T ss_pred             hcCCCeEEEEeCCCCCCcchH
Confidence            358899999999999999964

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=80.75  E-value=0.48  Score=33.53  Aligned_cols=18  Identities=22%  Similarity=0.399  Sum_probs=14.6

Q ss_pred             cEEEEeecCCCCCCceEe
Q psy12526         77 NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...|+-||++|+|||+.+
T Consensus        49 ~~~vLL~Gp~GtGKT~la   66 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLA   66 (301)
T ss_dssp             CSEEEEECSSSSSHHHHH
T ss_pred             CceEEEECCCCcCHHHHH
Confidence            346788999999999754

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=80.64  E-value=0.31  Score=35.13  Aligned_cols=15  Identities=20%  Similarity=0.277  Sum_probs=12.4

Q ss_pred             EEeecCCCCCCceEe
Q psy12526         80 IFAYGQTGEKTNYLL   94 (103)
Q Consensus        80 i~aYGqtgSGKT~Tm   94 (103)
                      ++-||++|+|||+.+
T Consensus        54 ~ll~Gp~G~GKTTLa   68 (334)
T 1in4_A           54 VLLAGPPGLGKTTLA   68 (334)
T ss_dssp             EEEESSTTSSHHHHH
T ss_pred             EEEECCCCCcHHHHH
Confidence            556999999999854

>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*

Probab=80.54  E-value=0.8  Score=33.03  Aligned_cols=25  Identities=16%  Similarity=0.291  Sum_probs=18.8

Q ss_pred             HHhhCC---CcEEEEe--ecCCCCCCceEe
Q psy12526         70 DNAFQG---YNACIFA--YGQTGEKTNYLL   94 (103)
Q Consensus        70 ~~~~~G---~n~ti~a--YGqtgSGKT~Tm   94 (103)
                      ..+..|   -...++-  ||..|+|||..+
T Consensus        40 ~~~~~~~~~~~~~~li~i~G~~G~GKT~L~   69 (412)
T 1w5s_A           40 NRLLSGAGLSDVNMIYGSIGRVGIGKTTLA   69 (412)
T ss_dssp             HHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred             HHHhcCCCCCCCEEEEeCcCcCCCCHHHHH
Confidence            555555   4567888  999999999754

>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...

Probab=80.45  E-value=0.9  Score=37.41  Aligned_cols=21  Identities=14%  Similarity=0.115  Sum_probs=18.6

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .++-|-||+.-|++|||||.+
T Consensus       165 ~~~~nQsIiiSGESGAGKTe~  185 (837)
T 1kk8_A          165 TDRENQSCLITGESGAGKTEN  185 (837)
T ss_dssp             HHTSEEEEEEECSTTSSHHHH
T ss_pred             hcCCCcEEEEeCCCCCCchhh
Confidence            358899999999999999974

>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}

Probab=80.21  E-value=0.93  Score=35.33  Aligned_cols=23  Identities=26%  Similarity=0.261  Sum_probs=17.2

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.+  ++..++||+|||.+
T Consensus        16 i~~il~g~~--~ll~~~TGsGKTl~   38 (699)
T 4gl2_A           16 AQPALEGKN--IIICLPTGCGKTRV   38 (699)
T ss_dssp             HHHHHSSCC--EEECCCTTSCHHHH
T ss_pred             HHHHHhCCC--EEEEcCCCCcHHHH
Confidence            445566777  45689999999975

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=80.19  E-value=0.52  Score=32.83  Aligned_cols=18  Identities=17%  Similarity=0.414  Sum_probs=14.8

Q ss_pred             cEEEEeecCCCCCCceEe
Q psy12526         77 NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...|+-||++|+|||+.+
T Consensus        54 ~~~vll~Gp~GtGKT~la   71 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLA   71 (297)
T ss_dssp             CSEEEEESSSSSCHHHHH
T ss_pred             CCeEEEECcCCCCHHHHH
Confidence            457888999999999753

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1

Probab=80.18  E-value=0.95  Score=37.97  Aligned_cols=21  Identities=14%  Similarity=0.156  Sum_probs=18.7

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .++-|-||+.-|++|||||.+
T Consensus       168 ~~~~~QsIiisGESGAGKTe~  188 (1010)
T 1g8x_A          168 DDRQNQSLLITGESGAGKTEN  188 (1010)
T ss_dssp             HHTCCEEEEEEESTTSSHHHH
T ss_pred             hcCCCeEEEEeCCCCCCcchH
Confidence            358899999999999999964

>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}

Probab=80.16  E-value=1  Score=33.52  Aligned_cols=23  Identities=22%  Similarity=0.232  Sum_probs=16.9

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|+  +...+||||||.+
T Consensus        13 i~~~~~~~~~--l~~~~tGsGKT~~   35 (555)
T 3tbk_A           13 ALPAKKGKNT--IICAPTGCGKTFV   35 (555)
T ss_dssp             HHHHHTTCCE--EEECCTTSCHHHH
T ss_pred             HHHHhCCCCE--EEEeCCCChHHHH
Confidence            3455678774  5679999999965

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	103
d2zfia1	349	c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus),	6e-12
d1goja_	354	c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5	4e-11
d1bg2a_	323	c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId	1e-10
d1sdma_	364	c.37.1.9 (A:) Kinesin heavy chain-like protein {Po	1e-10
d1v8ka_	362	c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c	2e-10
d1ry6a_	330	c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodiu	3e-10
d1x88a1	345	c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens),	5e-10
d2ncda_	368	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	4e-07
d1f9va_	342	c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjun	2e-06

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]} Length = 349

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

 Score = 58.1 bits (139), Expect = 6e-12
 Identities = 30/70 (42%), Positives = 48/70 (68%), Gaps = 1/70 (1%)

Query: 29  RSHLKPPKTFAFDHCFYSLD-PNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
           +   + PK+F+FD+ ++S   P   N+ASQ++V+  +G ++L +AF+GYN CIFAYGQTG
Sbjct: 38  KQPKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTG 97

Query: 88  EKTNYLLNGN 97
              +Y + G 
Sbjct: 98  AGKSYTMMGK 107

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]} Length = 354

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

 Score = 55.7 bits (133), Expect = 4e-11
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 7/55 (12%)

Query: 33 KPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTG 87
          +   +F FD  F   D +      Q  +FD   +  +D+   GYN  +FAYGQTG
Sbjct: 43 EAQGSFTFDRVF---DMS----CKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTG 90

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (129), Expect = 1e-10
 Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 7/66 (10%)

Query: 32 LKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTN 91
          +   K +AFD  F     +     SQE+V++   + I+ +  +GYN  IFAYGQT     
Sbjct: 38 VIASKPYAFDRVF---QSS----TSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKT 90

Query: 92 YLLNGN 97
          + + G 
Sbjct: 91 HTMEGK 96

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 364

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

 Score = 54.2 bits (129), Expect = 1e-10
 Identities = 24/68 (35%), Positives = 34/68 (50%), Gaps = 8/68 (11%)

Query: 34  PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
             K   +D  F   D N    A+Q+ VF+   + ++ +A  GYN CIFAYGQTG    + 
Sbjct: 40  KAKQHMYDRVF---DGN----ATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFT 91

Query: 94  LNGNGPFP 101
           + G    P
Sbjct: 92  IYGADSNP 99

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]} Length = 362

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

 Score = 53.4 bits (127), Expect = 2e-10
 Identities = 25/87 (28%), Positives = 34/87 (39%), Gaps = 18/87 (20%)

Query: 1   MPSRDTTRVYLPTAKQVRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKV 60
           +PS+    V+ P  K    +               + F FD  F   D      AS E V
Sbjct: 56  VPSKCLLLVHEPKLKVDLTKYL-----------ENQAFCFDFAF---DET----ASNEVV 97

Query: 61  FDALGRDILDNAFQGYNACIFAYGQTG 87
           +    R ++   F+G  A  FAYGQTG
Sbjct: 98  YRFTARPLVQTIFEGGKATCFAYGQTG 124

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 330

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 53.1 bits (126), Expect = 3e-10
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 8/67 (11%)

Query: 35  PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAF-QGYNACIFAYGQTGEKTNYL 93
              F  D  F   D           V++   + ++ + +  G     FAYGQTG    Y 
Sbjct: 49  RHEFIVDKVF---DDT----VDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYT 101

Query: 94  LNGNGPF 100
           + G+ P+
Sbjct: 102 MLGSQPY 108

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]} Length = 345

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

 Score = 52.3 bits (124), Expect = 5e-10
 Identities = 22/76 (28%), Positives = 33/76 (43%), Gaps = 7/76 (9%)

Query: 19 KQTTYLTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNA 78
          ++   +   G +     KT+ FD  F     +      Q  V+ ++   ILD    GYN 
Sbjct: 30 RKEVSVRTGGLADKSSRKTYTFDMVF---GAS----TKQIDVYRSVVCPILDEVIMGYNC 82

Query: 79 CIFAYGQTGEKTNYLL 94
           IFAYGQTG    + +
Sbjct: 83 TIFAYGQTGTGKTFTM 98

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 368

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 44.1 bits (103), Expect = 4e-07
 Identities = 22/64 (34%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 34  PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYL 93
             + F+FD  F+         +SQ  +F+ +   ++ +A  GYN CIFAYGQTG    Y 
Sbjct: 90  GQQIFSFDQVFHP-------LSSQSDIFEMVS-PLIQSALDGYNICIFAYGQTGSGKTYT 141

Query: 94  LNGN 97
           ++G 
Sbjct: 142 MDGV 145

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]} Length = 342

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

 Score = 42.3 bits (98), Expect = 2e-06
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 8/71 (11%)

Query: 24  LTGTGRSHLKPPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAY 83
           +  T   +      F FD  F   D       +   VF  +G+ ++ ++  GYN CIFAY
Sbjct: 38  MEVTKIQNTAQVHEFKFDKIF---DQQ----DTNVDVFKEVGQ-LVQSSLDGYNVCIFAY 89

Query: 84  GQTGEKTNYLL 94
           GQTG    + +
Sbjct: 90  GQTGSGKTFTM 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	103
d2zfia1	349	Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090	99.92
d1bg2a_	323	Kinesin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1goja_	354	Kinesin {Neurospora crassa [TaxId: 5141]}	99.91
d1v8ka_	362	Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090	99.9
d1sdma_	364	Kinesin heavy chain-like protein {Potato (Solanum	99.9
d1x88a1	345	Kinesin {Human (Homo sapiens), mitotic kinesin eg5	99.9
d2ncda_	368	Kinesin motor Ncd (non-claret disjunctional) {Frui	99.9
d1ry6a_	330	Kinesin {Malaria parasite (Plasmodium falciparum)	99.89
d1f9va_	342	Kinesin motor Ncd (non-claret disjunctional) {Bake	99.88
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	96.44
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.19
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	94.47
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	93.77
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	93.07
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	92.74
d1gkub1	237	Helicase-like "domain" of reverse gyrase {Archaeon	92.59
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	91.97
d1qdea_	212	Initiation factor 4a {Baker's yeast (Saccharomyces	91.87
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	91.13
d1s2ma1	206	Putative ATP-dependent RNA helicase DHH1 {Baker's	90.97
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	90.89
d2eyqa3	233	Transcription-repair coupling factor, TRCF {Escher	90.18
d2p6ra3	202	Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22	89.9
d1d0xa2	712	Myosin S1, motor domain {Dictyostelium discoideum	89.71
d1veca_	206	DEAD box RNA helicase rck/p54 {Human (Homo sapiens	89.67
d1t6na_	207	Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo	89.6
d1w7ja2	730	Myosin S1, motor domain {Chicken (Gallus gallus),	89.38
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	89.27
d1kk8a2	789	Myosin S1, motor domain {Bay scallop (Aequipecten	89.11
d2fz4a1	206	DNA repair protein RAD25 {Archaeoglobus fulgidus [	89.05
d1q0ua_	209	Probable DEAD box RNA helicase YqfR {Bacillus stea	88.81
d1j8yf2	211	GTPase domain of the signal sequence recognition p	88.68
d1br2a2	710	Myosin S1, motor domain {Chicken (Gallus gallus),	88.58
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	88.56
d2mysa2	794	Myosin S1, motor domain {Chicken (Gallus gallus),	88.44
d2j0sa1	222	Probable ATP-dependent RNA helicase DDX48 {Human (	88.06
d2qy9a2	211	GTPase domain of the signal recognition particle r	87.83
d1lkxa_	684	Myosin S1, motor domain {Dictyostelium discoideum,	87.51
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	87.44
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	87.17
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	86.84
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	86.84
d2g9na1	218	Initiation factor 4a {Human (Homo sapiens) [TaxId:	86.52
d1vmaa2	213	GTPase domain of the signal recognition particle r	86.48
d1oywa2	206	RecQ helicase domain {Escherichia coli [TaxId: 562	86.44
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	86.33
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	86.06
d1wp9a1	200	putative ATP-dependent RNA helicase PF2015 {Pyroco	86.02
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	85.61
d1ls1a2	207	GTPase domain of the signal sequence recognition p	85.6
d1gm5a3	264	RecG helicase domain {Thermotoga maritima [TaxId:	85.04
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	84.73
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	84.66
d1wrba1	238	putative ATP-dependent RNA helicase VlgB {Flatworm	84.5
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	84.07
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	83.97
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	83.59
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	82.6
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	81.75
d1t5la1	413	Nucleotide excision repair enzyme UvrB {Bacillus c	81.61
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	81.2
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	81.08
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	80.78
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	80.25

>d2zfia1 c.37.1.9 (A:4-352) Kinesin {Mouse (Mus musculus), kif1a [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif1a [TaxId: 10090]

Probab=99.92  E-value=6.9e-26  Score=167.11  Aligned_cols=86  Identities=37%  Similarity=0.689  Sum_probs=69.4

Q ss_pred             ccCCEEEEecCCCCCCCCCceEEeceEEecCCC-CCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         17 VRKQTTYLTGTGRSHLKPPKTFAFDHCFYSLDP-NLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~F~fd~vf~s~~~-~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..++++++..|.. .....+.|.||+|||+... .....++|++||+.++.|+|+.+++|||+||||||||||||||||+
T Consensus        27 ~~~~~~~~~~~~~-~~~~~k~f~FD~vf~~~~~~~~~~~~sQ~~vy~~~~~plv~~~l~G~n~ti~aYGqTgSGKT~Tm~  105 (349)
T d2zfia1          27 MSGSTTTIVNPKQ-PKETPKSFSFDYSYWSHTSPEDINYASQKQVYRDIGEEMLQHAFEGYNVCIFAYGQTGAGKSYTMM  105 (349)
T ss_dssp             EETTEEEECCTTC-TTSCCEEEECSEEEECSSCTTSSSCCCHHHHHHHTHHHHHHHHHTTCCEEEEEECSTTSSHHHHHT
T ss_pred             ECCCcEEEECCCC-CCcCCeeEEeceEeCCCCCccccccccHHHHHHHhhHHHHHHHHhccCceeeeeccCCCCCceeec
Confidence            3455666655543 2335689999999997652 2334579999999999999999999999999999999999999999


Q ss_pred             cCCC--CCCC
Q psy12526         96 GNGP--FPLI  103 (103)
Q Consensus        96 G~~~--~pGi  103 (103)
                      |+.+  ++||
T Consensus       106 G~~~~~~~Gl  115 (349)
T d2zfia1         106 GKQEKDQQGI  115 (349)
T ss_dssp             BCSGGGCBCH
T ss_pred             cCccccccCc
Confidence            9864  7775

>d1bg2a_ c.37.1.9 (A:) Kinesin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-25  Score=163.88  Aligned_cols=62  Identities=35%  Similarity=0.626  Sum_probs=58.7

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPL  102 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pG  102 (103)
                      ..+.|+||+||+       +.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|...+++
T Consensus        40 ~~~~f~FD~vf~-------~~~~q~~vf~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyT~~G~~~~~~  101 (323)
T d1bg2a_          40 ASKPYAFDRVFQ-------SSTSQEQVYNDCAKKIVKDVLEGYNGTIFAYGQTSSGKTHTMEGKLHDPE  101 (323)
T ss_dssp             TTEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHTTCCEEEEEECSTTSSHHHHHTBSTTCTT
T ss_pred             CCceeECCEEEC-------CCCCHHHHHHHHHHHHHHHHHcCCCcceeeecccCCCCceeccCCccccc
Confidence            468999999999       89999999999999999999999999999999999999999999887763

>d1goja_ c.37.1.9 (A:) Kinesin {Neurospora crassa [TaxId: 5141]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Neurospora crassa [TaxId: 5141]

Probab=99.91  E-value=5e-25  Score=162.71  Aligned_cols=58  Identities=34%  Similarity=0.649  Sum_probs=55.3

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG   98 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~   98 (103)
                      ..+.|+||+||+       +.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|..
T Consensus        44 ~~~~f~FD~vf~-------~~~~q~~vy~~~~~plv~~~l~G~n~ti~aYG~tgSGKT~Tm~G~~  101 (354)
T d1goja_          44 AQGSFTFDRVFD-------MSCKQSDIFDFSIKPTVDDILNGYNGTVFAYGQTGAGKSYTMMGTS  101 (354)
T ss_dssp             CCEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHTTTCCEEEEEECSTTSSHHHHHTBSC
T ss_pred             CcceEECCeEcC-------CCCCHHHHHHHHHHHHHHHhhccCceeEEecccCCCCcceeeeccc
Confidence            467999999999       8999999999999999999999999999999999999999999964

>d1v8ka_ c.37.1.9 (A:) Kinesin {Mouse (Mus musculus), kif2c [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Mouse (Mus musculus), kif2c [TaxId: 10090]

Probab=99.90  E-value=1.6e-25  Score=166.24  Aligned_cols=57  Identities=35%  Similarity=0.571  Sum_probs=54.7

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNG   98 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~   98 (103)
                      .+.|.||+||+       +.++|++||+.++.|+|+.+++|||+||||||||||||||||+|+.
T Consensus        79 ~~~f~FD~vf~-------~~~~Q~~Vy~~~~~plv~~~l~G~n~tifaYGqTGSGKTyTm~G~~  135 (362)
T d1v8ka_          79 NQAFCFDFAFD-------ETASNEVVYRFTARPLVQTIFEGGKATCFAYGQTGSGKTHTMGGDL  135 (362)
T ss_dssp             EEEEECSEEEC-------TTCCHHHHHHHTTHHHHHHHHTTCEEEEEEEESTTSSHHHHHHCBC
T ss_pred             ceeEeCCeecC-------CCCCHHHHHHHHHHHHHHHHHhccCceEEeeccCCCCCceeeeecC
Confidence            47899999999       8999999999999999999999999999999999999999999974

>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin heavy chain-like protein
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=99.90  E-value=3.6e-25  Score=164.25  Aligned_cols=62  Identities=35%  Similarity=0.694  Sum_probs=58.7

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.+ .|+|+.+++|||+||||||||||||||||+|+.++|||
T Consensus        40 ~~~~f~FD~vf~-------~~~~q~~vy~~v-~~lv~~~l~G~n~~i~aYGqTGSGKTyTm~G~~~~~Gi  101 (364)
T d1sdma_          40 KAKQHMYDRVFD-------GNATQDDVFEDT-KYLVQSAVDGYNVCIFAYGQTGSGKTFTIYGADSNPGL  101 (364)
T ss_dssp             SEEEEECSEEEC-------TTCCHHHHHHTT-THHHHHHHTTCEEEEEEECSTTSSHHHHHTBCSSSBCH
T ss_pred             CceEEECCeecC-------CCCCHHHHHHHH-HHHHHHHhcCCceeeeccccCCCCcccccccCccccch
Confidence            468999999999       899999999875 79999999999999999999999999999999999996

>d1x88a1 c.37.1.9 (A:18-362) Kinesin {Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Human (Homo sapiens), mitotic kinesin eg5 [TaxId: 9606]

Probab=99.90  E-value=3.6e-25  Score=162.94  Aligned_cols=60  Identities=37%  Similarity=0.605  Sum_probs=56.6

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPF  100 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~  100 (103)
                      ..+.|+||+|||       +.++|++||+.++.|+|+.+++|+|+||||||||||||||||+|+...
T Consensus        45 ~~~~f~FD~vf~-------~~~~q~~vy~~~~~~lv~~~l~G~n~~i~aYGqtgSGKTyTm~G~~~~  104 (345)
T d1x88a1          45 SRKTYTFDMVFG-------ASTKQIDVYRSVVCPILDEVIMGYNCTIFAYGQTGTGKTFTMEGERSP  104 (345)
T ss_dssp             EEEEEECSEEEC-------TTCCHHHHHHHHHHHHHHHHHTTCEEEEEEEECTTSSHHHHHTBCCCG
T ss_pred             CcceEecCEEeC-------CCCCHHHHHHHHHHHhHHHHhccCCceEEeeeeccccceEEeeecCCc
Confidence            457899999999       899999999999999999999999999999999999999999998754

>d2ncda_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.90  E-value=5.8e-25  Score=163.36  Aligned_cols=62  Identities=35%  Similarity=0.696  Sum_probs=57.8

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+|||       +.++|++||+. +.|+|+.+++|||+||||||||||||||||+|+..++||
T Consensus        90 ~~~~F~FD~vf~-------~~~~Q~~Vy~~-v~plv~~vl~G~n~ti~aYGqtGSGKT~Tm~G~~~~~Gi  151 (368)
T d2ncda_          90 GQQIFSFDQVFH-------PLSSQSDIFEM-VSPLIQSALDGYNICIFAYGQTGSGKTYTMDGVPESVGV  151 (368)
T ss_dssp             CCCEEECSEEEC-------TTCCHHHHHTT-THHHHHHHHTTCEEEEEEECSTTSSHHHHHTEETTEECH
T ss_pred             CceeeECCeEEC-------CCCCccchHHH-HHHHHHHHhcccceeEEeeccCCCccceEecccccccch
Confidence            358899999999       89999999975 579999999999999999999999999999999999986

>d1ry6a_ c.37.1.9 (A:) Kinesin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.89  E-value=1.2e-24  Score=159.36  Aligned_cols=62  Identities=26%  Similarity=0.455  Sum_probs=56.7

Q ss_pred             CceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhh-CCCcEEEEeecCCCCCCceEeccCC-----CCCCC
Q psy12526         35 PKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAF-QGYNACIFAYGQTGEKTNYLLNGNG-----PFPLI  103 (103)
Q Consensus        35 ~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~-~G~n~ti~aYGqtgSGKT~Tm~G~~-----~~pGi  103 (103)
                      .+.|.||+||+       +.++|++||+.++.|+|.+++ +|+|+||||||||||||||||+|..     ++|||
T Consensus        49 ~~~F~fD~Vf~-------~~~~q~~vy~~~~~plv~~~~~~G~n~~i~aYGqTGSGKTyTm~G~~~~~~~~~~Gi  116 (330)
T d1ry6a_          49 RHEFIVDKVFD-------DTVDNFTVYENTIKPLIIDLYENGCVCSCFAYGQTGSGKTYTMLGSQPYGQSDTPGI  116 (330)
T ss_dssp             EEEEECSEEEC-------TTCCHHHHHHHHTHHHHHHHHHHCCEEEEEEECCTTSSHHHHHHBSSSTTTSSCBCH
T ss_pred             cceEeCCeecC-------CCCCHHHHHHHHHHHHHHHHHhcCCCeEEEeeeccccccceeeecccccccccCCCc
Confidence            47899999998       899999999999999999988 5999999999999999999999975     46775

>d1f9va_ c.37.1.9 (A:) Kinesin motor Ncd (non-claret disjunctional) {Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Kinesin motor Ncd (non-claret disjunctional)
species: Baker's yeast (Saccharomyces cerevisiae), Kar [TaxId: 4932]

Probab=99.88  E-value=1.5e-23  Score=154.09  Aligned_cols=60  Identities=32%  Similarity=0.600  Sum_probs=54.5

Q ss_pred             CCceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEeccCCCCCCC
Q psy12526         34 PPKTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLNGNGPFPLI  103 (103)
Q Consensus        34 ~~~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~G~~~~pGi  103 (103)
                      ..+.|.||+||+       +.++|++||+.+ .|+|+.+++|||+||||||||||||||||+|+  ++||
T Consensus        48 ~~~~f~FD~vf~-------~~~~q~~vy~~v-~~~v~~~l~G~n~~i~aYGqtgSGKT~T~~G~--~~Gi  107 (342)
T d1f9va_          48 QVHEFKFDKIFD-------QQDTNVDVFKEV-GQLVQSSLDGYNVCIFAYGQTGSGKTFTMLNP--GDGI  107 (342)
T ss_dssp             CEEEEEESEEEC-------TTCCHHHHHHHH-HHHHGGGGGTCCEEEEEECCTTSSHHHHHHST--TTSH
T ss_pred             CceEeecCeEeC-------CCCCHHHHHHHh-hhhhcchhcccccceeeeeccCCccccccccC--cCch
Confidence            458999999999       899999999975 59999999999999999999999999999995  4564

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.44  E-value=0.00057  Score=45.56  Aligned_cols=50  Identities=22%  Similarity=0.424  Sum_probs=33.2

Q ss_pred             ceEEeceEEecCCCCCCCCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         36 KTFAFDHCFYSLDPNLPNFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        36 ~~F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..|+||.-+        ...+++..|..+ +.+++..-..+| .++-||.+|+||||-+.
T Consensus         5 ~~~tFdnF~--------vg~~N~~a~~~~-~~~~~~~~~~~n-~l~l~G~~G~GKTHLl~   54 (213)
T d1l8qa2           5 PKYTLENFI--------VGEGNRLAYEVV-KEALENLGSLYN-PIFIYGSVGTGKTHLLQ   54 (213)
T ss_dssp             TTCCSSSCC--------CCTTTHHHHHHH-HHHHHTTTTSCS-SEEEECSSSSSHHHHHH
T ss_pred             CCCChhhcc--------CCCcHHHHHHHH-HHHHhCcCCCCC-cEEEECCCCCcHHHHHH
Confidence            357777654        334566677554 355555444556 37899999999999653

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.19  E-value=0.0017  Score=42.92  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHhhCCCcE-----EEEeecCCCCCCceEe
Q psy12526         61 FDALGRDILDNAFQGYNA-----CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        61 ~~~~~~~lv~~~~~G~n~-----ti~aYGqtgSGKT~Tm   94 (103)
                      ++.+..-+...+.+|-..     .++.||..|+|||.++
T Consensus        25 ~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~   63 (287)
T d1w5sa2          25 AEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLA   63 (287)
T ss_dssp             HHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHH
Confidence            444444444556665432     4677899999999865

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=94.47  E-value=0.0053  Score=44.31  Aligned_cols=29  Identities=21%  Similarity=0.242  Sum_probs=25.0

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ..++.++.--++.|+.-|+||||||.||.
T Consensus       148 ~~l~~l~~~~~GliLvtGpTGSGKSTTl~  176 (401)
T d1p9ra_         148 DNFRRLIKRPHGIILVTGPTGSGKSTTLY  176 (401)
T ss_dssp             HHHHHHHTSSSEEEEEECSTTSCHHHHHH
T ss_pred             HHHHHHHhhhhceEEEEcCCCCCccHHHH
Confidence            45667788888999999999999999985

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.77  E-value=0.019  Score=37.63  Aligned_cols=28  Identities=32%  Similarity=0.401  Sum_probs=19.6

Q ss_pred             HHHHHhhCCCcE-----EEEeecCCCCCCceEe
Q psy12526         67 DILDNAFQGYNA-----CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        67 ~lv~~~~~G~n~-----ti~aYGqtgSGKT~Tm   94 (103)
                      ..++.+++|...     .|+-||++|+|||+..
T Consensus        17 ~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la   49 (273)
T d1gvnb_          17 DNLEELIQGKKAVESPTAFLLGGQPGSGKTSLR   49 (273)
T ss_dssp             HHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHH
T ss_pred             HHHHHHHhcccCCCCCEEEEEECCCCCCHHHHH
Confidence            344555555543     4889999999999853

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.07  E-value=0.02  Score=37.26  Aligned_cols=18  Identities=17%  Similarity=0.156  Sum_probs=15.0

Q ss_pred             cEEEEeecCCCCCCceEe
Q psy12526         77 NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...++-||++|+|||+++
T Consensus        43 ~~~lll~GppGtGKT~l~   60 (276)
T d1fnna2          43 YPRATLLGRPGTGKTVTL   60 (276)
T ss_dssp             CCEEEEECCTTSSHHHHH
T ss_pred             CCceEEECCCCCCHHHHH
Confidence            357889999999999764

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.74  E-value=0.013  Score=39.73  Aligned_cols=49  Identities=12%  Similarity=0.173  Sum_probs=30.9

Q ss_pred             EEeceEEecCCCCCCCCCCHHHHHHHHHHHHHH-HhhC--C--CcEEEEeecCCCCCCceE
Q psy12526         38 FAFDHCFYSLDPNLPNFASQEKVFDALGRDILD-NAFQ--G--YNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        38 F~fd~vf~s~~~~~~~~~~q~~v~~~~~~~lv~-~~~~--G--~n~ti~aYGqtgSGKT~T   93 (103)
                      ++||.|-+       .....+++.+.+..++.. ..+.  |  +...|+-||+.|+|||+.
T Consensus         4 ~~f~di~G-------~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l   57 (265)
T d1r7ra3           4 VTWEDIGG-------LEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL   57 (265)
T ss_dssp             CSCSSCSS-------SSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHH
T ss_pred             CCHHHhcC-------HHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhH
Confidence            56666654       333446677766656542 2332  2  245799999999999975

>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Helicase-like "domain" of reverse gyrase
domain: Helicase-like "domain" of reverse gyrase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.59  E-value=0.026  Score=37.03  Aligned_cols=25  Identities=8%  Similarity=-0.035  Sum_probs=19.1

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      ..+..+++|.|..|  -++||||||.+
T Consensus        50 ~~i~~~l~g~~~~i--~apTGsGKT~~   74 (237)
T d1gkub1          50 MWAKRILRKESFAA--TAPTGVGKTSF   74 (237)
T ss_dssp             HHHHHHHTTCCEEC--CCCBTSCSHHH
T ss_pred             HHHHHHHCCCCEEE--EecCCChHHHH
Confidence            34567789998665  46999999964

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.97  E-value=0.032  Score=35.65  Aligned_cols=27  Identities=19%  Similarity=0.229  Sum_probs=21.9

Q ss_pred             HHHHHhhCC---CcEEEEeecCCCCCCceE
Q psy12526         67 DILDNAFQG---YNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        67 ~lv~~~~~G---~n~ti~aYGqtgSGKT~T   93 (103)
                      +-++.++.|   .+..++-||..|||||+-
T Consensus        21 ~~LD~ll~GGi~~G~~~li~G~pGsGKT~l   50 (251)
T d1szpa2          21 KNLDTLLGGGVETGSITELFGEFRTGKSQL   50 (251)
T ss_dssp             HHHHHHHTSSEESSSEEEEEESTTSSHHHH
T ss_pred             HHHHhhhCCCCcCCeEEEEEcCCCCCHHHH
Confidence            557788887   466788999999999864

>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.87  E-value=0.041  Score=35.95  Aligned_cols=26  Identities=15%  Similarity=0.252  Sum_probs=20.2

Q ss_pred             HHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         67 DILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        67 ~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..+..+++|.+  |++-.+||||||.+.
T Consensus        39 ~aip~il~g~d--vl~~a~TGsGKT~a~   64 (212)
T d1qdea_          39 RAIMPIIEGHD--VLAQAQSGTGKTGTF   64 (212)
T ss_dssp             HHHHHHHTTCC--EEEECCTTSSHHHHH
T ss_pred             HHHHHHHcCCC--EEeecccccchhhhh
Confidence            34566789998  567899999999753

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.13  E-value=0.039  Score=35.73  Aligned_cols=37  Identities=16%  Similarity=0.159  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -..|+++-+.+    ...+-.+....++-||+.|+|||.++
T Consensus        26 iig~~~~~~~l----~~~i~~~~~~~lll~Gp~G~GKTtla   62 (231)
T d1iqpa2          26 IVGQEHIVKRL----KHYVKTGSMPHLLFAGPPGVGKTTAA   62 (231)
T ss_dssp             CCSCHHHHHHH----HHHHHHTCCCEEEEESCTTSSHHHHH
T ss_pred             ccCcHHHHHHH----HHHHHcCCCCeEEEECCCCCcHHHHH
Confidence            34555554432    22233454456888999999999754

>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Putative ATP-dependent RNA helicase DHH1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.97  E-value=0.05  Score=35.07  Aligned_cols=23  Identities=22%  Similarity=0.320  Sum_probs=18.2

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|  |++..+||||||..
T Consensus        32 ip~il~g~d--vi~~a~tGsGKTla   54 (206)
T d1s2ma1          32 IPVAITGRD--ILARAKNGTGKTAA   54 (206)
T ss_dssp             HHHHHHTCC--EEEECCTTSCHHHH
T ss_pred             HHHHHcCCC--EEEecCCcchhhhh
Confidence            445678988  67899999999863

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=90.89  E-value=0.038  Score=38.70  Aligned_cols=22  Identities=23%  Similarity=0.351  Sum_probs=16.6

Q ss_pred             hhCCCcEEEEeecCCCCCCceEec
Q psy12526         72 AFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        72 ~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      +..+.|  |+..|.||||||.+|.
T Consensus       163 v~~~~n--ili~G~tgSGKTT~l~  184 (323)
T d1g6oa_         163 IAIGKN--VIVCGGTGSGKTTYIK  184 (323)
T ss_dssp             HHHTCC--EEEEESTTSSHHHHHH
T ss_pred             HHhCCC--EEEEeeccccchHHHH
Confidence            345666  5669999999998763

>d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Transcription-repair coupling factor, TRCF
species: Escherichia coli [TaxId: 562]

Probab=90.18  E-value=0.11  Score=34.83  Aligned_cols=36  Identities=17%  Similarity=0.179  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526         53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY   92 (103)
Q Consensus        53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~   92 (103)
                      ...+|+..++.+    ...+-.+.....+-.|.+|||||-
T Consensus        56 lt~~Q~~~~~~i----~~~~~~~~~~~~LL~GdvGsGKT~   91 (233)
T d2eyqa3          56 TTPDQAQAINAV----LSDMCQPLAMDRLVCGDVGFGKTE   91 (233)
T ss_dssp             CCHHHHHHHHHH----HHHHHSSSCCEEEEECCCCTTTHH
T ss_pred             cchhHHHHHHHH----HHHHhccCccCeEEEcCCCCCcHH
Confidence            445677666655    455666777777888999999984

>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Hel308 helicase
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.90  E-value=0.026  Score=36.10  Aligned_cols=23  Identities=22%  Similarity=0.365  Sum_probs=17.5

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|-|  ++...+||||||++
T Consensus        34 i~~l~~~~~--~il~apTGsGKT~~   56 (202)
T d2p6ra3          34 VEKVFSGKN--LLLAMPTAAGKTLL   56 (202)
T ss_dssp             HHHHTTCSC--EEEECSSHHHHHHH
T ss_pred             HHHHHcCCC--EEEEcCCCCchhHH
Confidence            455677877  45689999999975

>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=89.71  E-value=0.078  Score=40.89  Aligned_cols=21  Identities=14%  Similarity=0.207  Sum_probs=18.9

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+.|-||+.-|++|||||.+.
T Consensus       122 ~~~nQsIiisGeSGaGKTe~~  142 (712)
T d1d0xa2         122 DRQNQSLLITGESGAGKTENT  142 (712)
T ss_dssp             HTCCEEEEEECSTTSSHHHHH
T ss_pred             hCCCceEEEeCCCCCCHHHHH
Confidence            588999999999999999863

>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEAD box RNA helicase rck/p54
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.67  E-value=0.12  Score=33.33  Aligned_cols=23  Identities=17%  Similarity=0.239  Sum_probs=17.9

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|+  ++-.+||||||..
T Consensus        34 ip~il~g~dv--l~~a~TGsGKTla   56 (206)
T d1veca_          34 IPIALSGRDI--LARAKNGTGKSGA   56 (206)
T ss_dssp             HHHHHTTCCE--EEECCSSSTTHHH
T ss_pred             HHHHHcCCCE--EeeccCccccccc
Confidence            4567899885  4578999999964

>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Spliceosome RNA helicase BAT1 (UAP56)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.60  E-value=0.1  Score=33.77  Aligned_cols=24  Identities=13%  Similarity=0.282  Sum_probs=18.2

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..+++|.|.  ++-.+||||||..
T Consensus        31 aip~il~g~dv--l~~A~TGsGKTla   54 (207)
T d1t6na_          31 CIPQAILGMDV--LCQAKSGMGKTAV   54 (207)
T ss_dssp             HHHHHHTTCCE--EEECCTTSCHHHH
T ss_pred             HHHHHHcCCCe--EEEeccccccccc
Confidence            34566899884  5677999999864

>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]

Probab=89.38  E-value=0.085  Score=40.63  Aligned_cols=22  Identities=18%  Similarity=0.206  Sum_probs=19.1

Q ss_pred             hCCCcEEEEeecCCCCCCceEe
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -.+.|-||+.-|++|||||.++
T Consensus        90 ~~~~~Q~IiisGeSGsGKTe~~  111 (730)
T d1w7ja2          90 RDERNQSIIVSGESGAGKTVSA  111 (730)
T ss_dssp             HHTCCEEEEEECSTTSSHHHHH
T ss_pred             HhCCCeEEEEEeCCCCCHHHHH
Confidence            3588999999999999999753

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=89.27  E-value=0.12  Score=33.25  Aligned_cols=27  Identities=26%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             HHHHHhhCC---CcEEEEeecCCCCCCceE
Q psy12526         67 DILDNAFQG---YNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        67 ~lv~~~~~G---~n~ti~aYGqtgSGKT~T   93 (103)
                      +-++.++.|   .+..++-+|.+|||||.-
T Consensus        23 ~~LD~ll~GGlp~G~~~li~G~pGsGKT~~   52 (254)
T d1pzna2          23 KSLDKLLGGGIETQAITEVFGEFGSGKTQL   52 (254)
T ss_dssp             HHHHHHHTSSEESSEEEEEEESTTSSHHHH
T ss_pred             HHHHHhhcCCccCCEEEEEEcCCCCCHHHH
Confidence            557778876   367888999999999863

>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Bay scallop (Aequipecten irradians) [TaxId: 31199]

Probab=89.11  E-value=0.081  Score=41.19  Aligned_cols=21  Identities=14%  Similarity=0.115  Sum_probs=18.8

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      ..+.|-||+.-|++|||||.+
T Consensus       117 ~~~~nQ~IiisGESGaGKTe~  137 (789)
T d1kk8a2         117 TDRENQSCLITGESGAGKTEN  137 (789)
T ss_dssp             HHTSEEEEEEECSTTSSHHHH
T ss_pred             HhCCCcEEEEEeCCCCCHHHH
Confidence            468899999999999999976

>d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DNA repair protein RAD25
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=89.05  E-value=0.065  Score=34.56  Aligned_cols=25  Identities=20%  Similarity=0.235  Sum_probs=16.8

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      ++.++++-++.|  ...||+|||.++.
T Consensus        79 v~~~~~~~~~ll--~~~tG~GKT~~a~  103 (206)
T d2fz4a1          79 LERWLVDKRGCI--VLPTGSGKTHVAM  103 (206)
T ss_dssp             HHHHTTTSEEEE--EESSSTTHHHHHH
T ss_pred             HHHHHhCCCcEE--EeCCCCCceehHH
Confidence            455666655544  3589999998653

>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable DEAD box RNA helicase YqfR
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=88.81  E-value=0.054  Score=34.68  Aligned_cols=23  Identities=22%  Similarity=0.332  Sum_probs=17.4

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|  |++-.+||||||..
T Consensus        32 ip~~l~G~d--vii~a~TGSGKTla   54 (209)
T d1q0ua_          32 IPGALRGES--MVGQSQTGTGKTHA   54 (209)
T ss_dssp             HHHHHHTCC--EEEECCSSHHHHHH
T ss_pred             HHHHHCCCC--eEeeccccccccee
Confidence            345678888  45678999999964

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=88.68  E-value=0.064  Score=35.47  Aligned_cols=17  Identities=18%  Similarity=0.139  Sum_probs=9.4

Q ss_pred             EEEEeecCCCCCCceEe
Q psy12526         78 ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm   94 (103)
                      ..|+-.|+||+|||.|+
T Consensus        13 ~vi~lvGptGvGKTTTi   29 (211)
T d1j8yf2          13 YVIMLVGVQGTGKATTA   29 (211)
T ss_dssp             EEEEEECSCCC----HH
T ss_pred             EEEEEECCCCCCHHHHH
Confidence            34555699999999985

>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.58  E-value=0.12  Score=39.68  Aligned_cols=20  Identities=15%  Similarity=0.237  Sum_probs=18.5

Q ss_pred             CCCcEEEEeecCCCCCCceE
Q psy12526         74 QGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+.|-||+.-|.+|||||.+
T Consensus        88 ~~~~Q~IiisGeSGaGKTe~  107 (710)
T d1br2a2          88 DREDQSILCTGESGAGKTEN  107 (710)
T ss_dssp             HTCCEEEEEECSTTSSHHHH
T ss_pred             hCCCcEEEEEeCCCCCHHHH
Confidence            58899999999999999986

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.56  E-value=0.038  Score=35.63  Aligned_cols=21  Identities=14%  Similarity=0.278  Sum_probs=15.6

Q ss_pred             CCCcEEEEeecCCCCCCceEe
Q psy12526         74 QGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      .+....++-||++|+|||.+.
T Consensus        30 ~~~~~~lll~Gp~G~GKTtl~   50 (237)
T d1sxjd2          30 SANLPHMLFYGPPGTGKTSTI   50 (237)
T ss_dssp             CTTCCCEEEECSTTSSHHHHH
T ss_pred             cCCCCeEEEECCCCCChHHHH
Confidence            344345888999999999753

>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]

Probab=88.44  E-value=0.11  Score=40.38  Aligned_cols=21  Identities=19%  Similarity=0.221  Sum_probs=18.6

Q ss_pred             hCCCcEEEEeecCCCCCCceE
Q psy12526         73 FQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      -.+.|-||+.-|.+|||||.+
T Consensus       119 ~~~~~QsIiisGeSGaGKTe~  139 (794)
T d2mysa2         119 TDRENQSILITGESGAGKTVN  139 (794)
T ss_dssp             HHTCCEEEEEEECTTSCHHHH
T ss_pred             HcCCCcEEEEEcCCCCCHHHH
Confidence            358899999999999999964

>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Probable ATP-dependent RNA helicase DDX48
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.06  E-value=0.15  Score=33.52  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=18.4

Q ss_pred             HHHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         68 ILDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        68 lv~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+..+++|.|..  +-.+||||||..
T Consensus        47 aIp~il~g~dvi--~~a~TGSGKTla   70 (222)
T d2j0sa1          47 AIKQIIKGRDVI--AQSQSGTGKTAT   70 (222)
T ss_dssp             HHHHHHTTCCEE--EECCTTSSHHHH
T ss_pred             HHHHHHCCCCeE--EEcCcchhhhhh
Confidence            455678898854  578999999863

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=87.83  E-value=0.049  Score=36.14  Aligned_cols=16  Identities=19%  Similarity=0.285  Sum_probs=13.5

Q ss_pred             EEEeecCCCCCCceEe
Q psy12526         79 CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm   94 (103)
                      .|+-.|.||+|||.|+
T Consensus        11 vi~lvGptGvGKTTTi   26 (211)
T d2qy9a2          11 VILMVGVNGVGKTTTI   26 (211)
T ss_dssp             EEEEECCTTSCHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4666799999999986

>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Motor proteins
domain: Myosin S1, motor domain
species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]

Probab=87.51  E-value=0.15  Score=38.91  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=19.0

Q ss_pred             hCCCcEEEEeecCCCCCCceEe
Q psy12526         73 FQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        73 ~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      -.+.|-||+.-|++|||||.+.
T Consensus        82 ~~~~~QsIiisGeSGsGKTe~~  103 (684)
T d1lkxa_          82 QSQENQCVIISGESGAGKTEAS  103 (684)
T ss_dssp             HHCCCEEEEEECSTTSSHHHHH
T ss_pred             HcCCCeEEEEEcCCCCCHHHHH
Confidence            3578999999999999999763

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=87.44  E-value=0.078  Score=35.40  Aligned_cols=27  Identities=7%  Similarity=0.078  Sum_probs=18.6

Q ss_pred             HHHHHhhCCCc---EEEEeecCCCCCCceE
Q psy12526         67 DILDNAFQGYN---ACIFAYGQTGEKTNYL   93 (103)
Q Consensus        67 ~lv~~~~~G~n---~ti~aYGqtgSGKT~T   93 (103)
                      .+++.+..+-+   .+|+-||+.|+|||+.
T Consensus        27 ~~~~~~~~~~~~p~~~vLL~GppGtGKT~l   56 (246)
T d1d2na_          27 LLVQQTKNSDRTPLVSVLLEGPPHSGKTAL   56 (246)
T ss_dssp             HHHHHHHHCSSCSEEEEEEECSTTSSHHHH
T ss_pred             HHHHHHhccCCCCCeEEEEECcCCCCHHHH
Confidence            44555443332   4688999999999874

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=87.17  E-value=0.05  Score=36.18  Aligned_cols=17  Identities=6%  Similarity=0.151  Sum_probs=13.8

Q ss_pred             EEEeecCCCCCCceEec
Q psy12526         79 CIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm~   95 (103)
                      -++..|.-|||||+||.
T Consensus        16 ~~lI~g~aGTGKTt~l~   32 (306)
T d1uaaa1          16 PCLVLAGAGSGKTRVIT   32 (306)
T ss_dssp             EEEECCCTTSCHHHHHH
T ss_pred             CEEEEeeCCccHHHHHH
Confidence            34566999999999974

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=86.84  E-value=0.13  Score=33.03  Aligned_cols=25  Identities=4%  Similarity=-0.004  Sum_probs=18.2

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      +.+.+....+|+-||..|+|||..+
T Consensus        22 ~~l~~~~~~~i~i~G~~G~GKTsLl   46 (283)
T d2fnaa2          22 EKLKGLRAPITLVLGLRRTGKSSII   46 (283)
T ss_dssp             HHHHHTCSSEEEEEESTTSSHHHHH
T ss_pred             HHHHhccCCEEEEEcCCCCcHHHHH
Confidence            3334445567889999999999754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=86.84  E-value=0.042  Score=37.04  Aligned_cols=18  Identities=11%  Similarity=0.226  Sum_probs=14.5

Q ss_pred             EEEEeecCCCCCCceEec
Q psy12526         78 ACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm~   95 (103)
                      +.++.-|.-|||||+||.
T Consensus        25 g~~lV~g~aGSGKTt~l~   42 (318)
T d1pjra1          25 GPLLIMAGAGSGKTRVLT   42 (318)
T ss_dssp             SCEEEEECTTSCHHHHHH
T ss_pred             CCEEEEecCCccHHHHHH
Confidence            346677999999999874

>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Initiation factor 4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.52  E-value=0.16  Score=33.17  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=17.6

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..++.|.|.  ++-.+||||||.+
T Consensus        43 ip~il~g~dv--l~~a~TGsGKTla   65 (218)
T d2g9na1          43 ILPCIKGYDV--IAQAQSGTGKTAT   65 (218)
T ss_dssp             HHHHHHTCCE--EEECCTTSSHHHH
T ss_pred             HHHHHcCCCE--EEEcccchhhhhh
Confidence            3456789884  5688999999964

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=86.48  E-value=0.065  Score=35.49  Aligned_cols=16  Identities=19%  Similarity=0.225  Sum_probs=13.0

Q ss_pred             EEEeecCCCCCCceEe
Q psy12526         79 CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm   94 (103)
                      .|+--|.||+|||.|+
T Consensus        13 vi~lvGptGvGKTTTi   28 (213)
T d1vmaa2          13 VIMVVGVNGTGKTTSC   28 (213)
T ss_dssp             EEEEECCTTSSHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            4555699999999985

>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecQ helicase domain
species: Escherichia coli [TaxId: 562]

Probab=86.44  E-value=0.087  Score=33.49  Aligned_cols=23  Identities=17%  Similarity=0.277  Sum_probs=16.9

Q ss_pred             HHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         70 DNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        70 ~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      +.+++|.|+  +.--+||||||...
T Consensus        35 ~~~l~g~~v--lv~apTGsGKT~~~   57 (206)
T d1oywa2          35 DTVLSGRDC--LVVMPTGGGKSLCY   57 (206)
T ss_dssp             HHHHTTCCE--EEECSCHHHHHHHH
T ss_pred             HHHHcCCCE--EEEcCCCCCCcchh
Confidence            456788885  44578999998643

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=86.33  E-value=0.18  Score=32.35  Aligned_cols=26  Identities=31%  Similarity=0.385  Sum_probs=20.3

Q ss_pred             HHHHHhhCC---CcEEEEeecCCCCCCce
Q psy12526         67 DILDNAFQG---YNACIFAYGQTGEKTNY   92 (103)
Q Consensus        67 ~lv~~~~~G---~n~ti~aYGqtgSGKT~   92 (103)
                      +-++.++.|   ....++-||.+|+|||.
T Consensus        13 ~~LD~~l~GGi~~gsl~li~G~pGsGKT~   41 (242)
T d1tf7a2          13 VRLDEMCGGGFFKDSIILATGATGTGKTL   41 (242)
T ss_dssp             HHHHHHTTSSEESSCEEEEEECTTSSHHH
T ss_pred             HHHHHhhcCCCcCCeEEEEEeCCCCCHHH
Confidence            346777775   46678889999999985

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=86.06  E-value=0.059  Score=37.93  Aligned_cols=15  Identities=33%  Similarity=0.572  Sum_probs=13.3

Q ss_pred             EEeecCCCCCCceEe
Q psy12526         80 IFAYGQTGEKTNYLL   94 (103)
Q Consensus        80 i~aYGqtgSGKT~Tm   94 (103)
                      ++..|.||||||++|
T Consensus        53 ~~I~G~tGsGKT~~l   67 (433)
T d1e9ra_          53 LLVNGATGTGKSVLL   67 (433)
T ss_dssp             EEEEECTTSSHHHHH
T ss_pred             EEEEeCCCCcHHHHH
Confidence            577999999999876

>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase PF2015
species: Pyrococcus furiosus [TaxId: 2261]

Probab=86.02  E-value=0.12  Score=32.35  Aligned_cols=17  Identities=24%  Similarity=0.380  Sum_probs=11.9

Q ss_pred             CCcEEEEeecCCCCCCceE
Q psy12526         75 GYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        75 G~n~ti~aYGqtgSGKT~T   93 (103)
                      +-| +|+ .+.||||||.+
T Consensus        23 ~~n-~lv-~~pTGsGKT~i   39 (200)
T d1wp9a1          23 ETN-CLI-VLPTGLGKTLI   39 (200)
T ss_dssp             GSC-EEE-ECCTTSCHHHH
T ss_pred             cCC-eEE-EeCCCCcHHHH
Confidence            346 343 47999999974

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.61  E-value=0.077  Score=34.48  Aligned_cols=17  Identities=18%  Similarity=0.255  Sum_probs=14.0

Q ss_pred             EEEEeecCCCCCCceEe
Q psy12526         78 ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm   94 (103)
                      -.++-||+.|+|||.+.
T Consensus        53 ~~lll~GPpG~GKTt~a   69 (253)
T d1sxja2          53 RAAMLYGPPGIGKTTAA   69 (253)
T ss_dssp             SEEEEECSTTSSHHHHH
T ss_pred             ceEEEECCCCCCHHHHH
Confidence            35788999999999753

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=85.60  E-value=0.077  Score=34.89  Aligned_cols=16  Identities=19%  Similarity=0.175  Sum_probs=12.7

Q ss_pred             EEEeecCCCCCCceEe
Q psy12526         79 CIFAYGQTGEKTNYLL   94 (103)
Q Consensus        79 ti~aYGqtgSGKT~Tm   94 (103)
                      .|+-.|.||+|||.|+
T Consensus        12 vi~lvGp~GvGKTTTi   27 (207)
T d1ls1a2          12 LWFLVGLQGSGKTTTA   27 (207)
T ss_dssp             EEEEECCTTTTHHHHH
T ss_pred             EEEEECCCCCCHHHHH
Confidence            3445699999999885

>d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: RecG helicase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=85.04  E-value=0.21  Score=33.95  Aligned_cols=36  Identities=8%  Similarity=0.122  Sum_probs=26.1

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCce
Q psy12526         53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNY   92 (103)
Q Consensus        53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~   92 (103)
                      -..+|..+++++.    .++..+....-+-+|-+|||||-
T Consensus        84 LT~~Q~~ai~ei~----~d~~~~~~m~rLL~GdvGSGKT~  119 (264)
T d1gm5a3          84 LTNAQKRAHQEIR----NDMISEKPMNRLLQGDVGSGKTV  119 (264)
T ss_dssp             CCHHHHHHHHHHH----HHHHSSSCCCCEEECCSSSSHHH
T ss_pred             CCchHHHHHHHHH----HHhhccCcceeeeeccccccccH
Confidence            3557877776654    55566666666789999999984

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=84.73  E-value=0.3  Score=30.68  Aligned_cols=28  Identities=18%  Similarity=0.252  Sum_probs=22.1

Q ss_pred             HHHHHhhCC-C--cEEEEeecCCCCCCceEe
Q psy12526         67 DILDNAFQG-Y--NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        67 ~lv~~~~~G-~--n~ti~aYGqtgSGKT~Tm   94 (103)
                      +-|+.++.| +  ...+.-+|.+|+|||..+
T Consensus        21 ~~LD~ll~GGl~~G~l~~i~G~~G~GKT~~~   51 (258)
T d2i1qa2          21 SELDSVLGGGLESQSVTEFAGVFGSGKTQIM   51 (258)
T ss_dssp             HHHHHHTTSSEETTEEEEEEESTTSSHHHHH
T ss_pred             HHHHHhcCCCccCCeEEEEEeCCCCCHHHHH
Confidence            567888887 3  567788999999998643

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.66  E-value=0.31  Score=31.05  Aligned_cols=20  Identities=20%  Similarity=0.365  Sum_probs=14.3

Q ss_pred             CCCcEEEEeecCCCCCCceE
Q psy12526         74 QGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        74 ~G~n~ti~aYGqtgSGKT~T   93 (103)
                      .+.--.++-||+.|+|||.+
T Consensus        32 ~~~~~~lLl~Gp~G~GKttl   51 (227)
T d1sxjc2          32 EGKLPHLLFYGPPGTGKTST   51 (227)
T ss_dssp             TTCCCCEEEECSSSSSHHHH
T ss_pred             cCCCCeEEEECCCCCChhHH
Confidence            44433366699999999864

>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: putative ATP-dependent RNA helicase VlgB
species: Flatworm (Dugesia japonica) [TaxId: 6161]

Probab=84.50  E-value=0.3  Score=32.13  Aligned_cols=23  Identities=17%  Similarity=0.183  Sum_probs=17.6

Q ss_pred             HHHhhCCCcEEEEeecCCCCCCceE
Q psy12526         69 LDNAFQGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        69 v~~~~~G~n~ti~aYGqtgSGKT~T   93 (103)
                      +..+++|.|..  +-.+||||||.+
T Consensus        52 ip~il~g~dvv--i~a~TGsGKTla   74 (238)
T d1wrba1          52 IPAILEHRDIM--ACAQTGSGKTAA   74 (238)
T ss_dssp             HHHHHTTCCEE--EECCTTSSHHHH
T ss_pred             hhhhhCCCCEE--EECCCCCCccee
Confidence            45567898854  577999999974

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=84.07  E-value=0.13  Score=35.32  Aligned_cols=15  Identities=27%  Similarity=0.357  Sum_probs=11.9

Q ss_pred             EEEeecCCCCCCceE
Q psy12526         79 CIFAYGQTGEKTNYL   93 (103)
Q Consensus        79 ti~aYGqtgSGKT~T   93 (103)
                      .|+=||++|+|||..
T Consensus        51 ~iLl~GPpG~GKT~l   65 (309)
T d1ofha_          51 NILMIGPTGVGKTEI   65 (309)
T ss_dssp             CEEEECCTTSSHHHH
T ss_pred             eEEEECCCCCCHHHH
Confidence            445599999999963

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=83.97  E-value=0.089  Score=34.11  Aligned_cols=39  Identities=23%  Similarity=0.250  Sum_probs=23.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhCC--CcEEEEeecCCCCCCceEe
Q psy12526         55 ASQEKVFDALGRDILDNAFQG--YNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        55 ~~q~~v~~~~~~~lv~~~~~G--~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ..|+++-+.+ +.++.....+  .-..++-||+.|+|||.++
T Consensus        12 vGq~~~~~~L-~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla   52 (239)
T d1ixsb2          12 IGQERLKQKL-RVYLEAAKARKEPLEHLLLFGPPGLGKTTLA   52 (239)
T ss_dssp             CSCHHHHHHH-HHHHHHHTTSSSCCCCEEEECCTTSCHHHHH
T ss_pred             CCHHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCCHHHHH
Confidence            3566555443 4555554432  1233566999999999653

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.59  E-value=0.3  Score=29.69  Aligned_cols=27  Identities=19%  Similarity=0.281  Sum_probs=19.3

Q ss_pred             HHHHHhhC-CC--cEEEEeecCCCCCCceE
Q psy12526         67 DILDNAFQ-GY--NACIFAYGQTGEKTNYL   93 (103)
Q Consensus        67 ~lv~~~~~-G~--n~ti~aYGqtgSGKT~T   93 (103)
                      +-++.++. |+  ...+.-+|.+|||||.-
T Consensus        10 ~~LD~ll~GGi~~G~v~~i~G~~GsGKT~l   39 (242)
T d1n0wa_          10 KELDKLLQGGIETGSITEMFGEFRTGKTQI   39 (242)
T ss_dssp             HHHHHHTTTSEETTSEEEEECCTTSSHHHH
T ss_pred             HHHHHhhcCCCcCCEEEEEEeCCCCCHHHH
Confidence            34567776 32  55677899999999853

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.60  E-value=0.33  Score=30.97  Aligned_cols=37  Identities=16%  Similarity=0.181  Sum_probs=22.3

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEe
Q psy12526         54 FASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        54 ~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm   94 (103)
                      ...|+++.+.+    ...+.++-.-.++-||+.|+|||.+.
T Consensus        17 ~ig~~~~~~~L----~~~~~~~~~~~~ll~Gp~G~GKTt~a   53 (224)
T d1sxjb2          17 IVGNKETIDRL----QQIAKDGNMPHMIISGMPGIGKTTSV   53 (224)
T ss_dssp             CCSCTHHHHHH----HHHHHSCCCCCEEEECSTTSSHHHHH
T ss_pred             hcCCHHHHHHH----HHHHHcCCCCeEEEECCCCCCchhhH
Confidence            34555554333    23334554444667999999999754

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=81.75  E-value=0.21  Score=32.15  Aligned_cols=39  Identities=26%  Similarity=0.211  Sum_probs=22.7

Q ss_pred             CCCHHHHHHHHHHHHHHHhh--CCCcEEEEeecCCCCCCceE
Q psy12526         54 FASQEKVFDALGRDILDNAF--QGYNACIFAYGQTGEKTNYL   93 (103)
Q Consensus        54 ~~~q~~v~~~~~~~lv~~~~--~G~n~ti~aYGqtgSGKT~T   93 (103)
                      -..|+.+-+.+ ...+....  ....-.++-||+.|+|||.+
T Consensus        11 ivGqe~~~~~l-~~~i~~~~~~~~~~~~~L~~GPpGtGKT~l   51 (238)
T d1in4a2          11 FIGQENVKKKL-SLALEAAKMRGEVLDHVLLAGPPGLGKTTL   51 (238)
T ss_dssp             CCSCHHHHHHH-HHHHHHHHHHTCCCCCEEEESSTTSSHHHH
T ss_pred             cCChHHHHHHH-HHHHHHHHhcCCCCCeEEEECCCCCcHHHH
Confidence            34666665544 34444332  22222356699999999974

>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Nucleotide excision repair enzyme UvrB
species: Bacillus caldotenax [TaxId: 1395]

Probab=81.61  E-value=0.25  Score=35.60  Aligned_cols=38  Identities=16%  Similarity=0.240  Sum_probs=26.3

Q ss_pred             CCCCHHHHHHHHHHHHHHHhhCCCcEEEEeecCCCCCCceEec
Q psy12526         53 NFASQEKVFDALGRDILDNAFQGYNACIFAYGQTGEKTNYLLN   95 (103)
Q Consensus        53 ~~~~q~~v~~~~~~~lv~~~~~G~n~ti~aYGqtgSGKT~Tm~   95 (103)
                      |.-.|-+-    ++.|++.+-+|..-.+ -.|.||||||++|.
T Consensus        12 p~gDQP~a----I~~l~~~l~~g~~~q~-l~GltGS~ka~~iA   49 (413)
T d1t5la1          12 PQGDQPQA----IAKLVDGLRRGVKHQT-LLGATGTGKTFTIS   49 (413)
T ss_dssp             CCTTHHHH----HHHHHHHHHHTCSEEE-EEECTTSCHHHHHH
T ss_pred             CCCCCHHH----HHHHHHHHhcCCCcEE-EeCCCCcHHHHHHH
Confidence            66677543    4556677777765333 46999999999874

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.20  E-value=0.17  Score=31.19  Aligned_cols=22  Identities=14%  Similarity=0.353  Sum_probs=16.7

Q ss_pred             HhhCCC-cEEEEeecCCCCCCce
Q psy12526         71 NAFQGY-NACIFAYGQTGEKTNY   92 (103)
Q Consensus        71 ~~~~G~-n~ti~aYGqtgSGKT~   92 (103)
                      ....|+ .++||=.|..|||||.
T Consensus        12 ~~~~~~~g~vI~L~G~pGSGKTT   34 (195)
T d1x6va3          12 GTRGGFRGCTVWLTGLSGAGKTT   34 (195)
T ss_dssp             SSSCSCCCEEEEEESSCHHHHHH
T ss_pred             hhhcCCCCeEEEEECCCCCCHHH
Confidence            344566 5678888999999985

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=81.08  E-value=0.19  Score=36.46  Aligned_cols=13  Identities=31%  Similarity=0.386  Sum_probs=11.6

Q ss_pred             EEeecCCCCCCce
Q psy12526         80 IFAYGQTGEKTNY   92 (103)
Q Consensus        80 i~aYGqtgSGKT~   92 (103)
                      |+-.|+||+|||+
T Consensus        52 ILliGPTGvGKTl   64 (443)
T d1g41a_          52 ILMIGPTGVGKTE   64 (443)
T ss_dssp             EEEECCTTSSHHH
T ss_pred             EEEECCCCCCHHH
Confidence            6679999999997

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=80.78  E-value=0.22  Score=33.38  Aligned_cols=18  Identities=17%  Similarity=0.285  Sum_probs=15.1

Q ss_pred             cEEEEeecCCCCCCceEe
Q psy12526         77 NACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        77 n~ti~aYGqtgSGKT~Tm   94 (103)
                      .-.++-||+.|+|||+..
T Consensus        45 ~~~iLL~GppGtGKT~la   62 (256)
T d1lv7a_          45 PKGVLMVGPPGTGKTLLA   62 (256)
T ss_dssp             CCEEEEECCTTSCHHHHH
T ss_pred             CCeEEeeCCCCCCccHHH
Confidence            456889999999999853

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.25  E-value=0.24  Score=32.93  Aligned_cols=17  Identities=24%  Similarity=0.473  Sum_probs=14.0

Q ss_pred             EEEEeecCCCCCCceEe
Q psy12526         78 ACIFAYGQTGEKTNYLL   94 (103)
Q Consensus        78 ~ti~aYGqtgSGKT~Tm   94 (103)
                      -.|+-||+.|+|||+..
T Consensus        39 ~giLL~GppGtGKT~l~   55 (258)
T d1e32a2          39 RGILLYGPPGTGKTLIA   55 (258)
T ss_dssp             CEEEEECCTTSSHHHHH
T ss_pred             ceeEEecCCCCCchHHH
Confidence            45889999999999743