Psyllid ID: psy12530

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------19
Protein Sequence
MLNEASLHFSASGTLMFKTFHFHISTALILKQCHLVLIQKENKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEKSWIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY
Secondary Structure (PSIPRED)
ccccccccccccccEEEEEEHHHHHHHHHHHHHHHHHEEHHHHHHHHcccccccccccccccHHHHHHHHHcccEEEcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHcccccccccccHcHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mlneaslhfsasgtlMFKTFHFHISTALILKQCHLVLIQKENKRRrkegeedkeeggggggkrkkkkkkkkekswirpcylreGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVkrvnagrvrtHQRKFLLAIY
Flexible Loop (DISEMBL)
MLNEASLHFSASGTLMFKTFHFHISTALILKQCHLVLIQKEnkrrrkegeedkeeggggggkrkkkkkkkkekswirpcylregcTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETwliykhtrlvkrvnagrlknaaanvlretwliykhtrlvkrvnagrvrthqrkfllaiy
Low Complexity Region (SEG)
MLNEASLHFSASGTLMFKTFHFHISTALILKQCHLVLIQkenkrrrkegeedkeeggggggkrkkkkkkkkekSWIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY
Disordered region (IsUnstruct)
********FSASGTLMFKTFHFHISTALILKQCHLVLIQ***********************************WIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAI*
Disordered Region (DISOPRED)
*******HFSASGTLMFKTFHFHISTALILKQCHLV****************************************RPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHT****************NVLRETWLIYKHTRLV**VNAGRVRTHQRKFLLAIY
Disordered Region (DISEMBL)
MLNEASLHFSASGTLMFKTFHFHISTALILKQCHLVLIQKEN********************************WIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY
Disordered Region (DISPRO)
****ASLHFSASGTLMFKTFHFHISTALILKQCHLVLIQKENK*****************************KSWIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MLNEASLHFSASGTLMFKTFHFHISTALILKQCHLVLIQKENKRRRKEGEEDKEEGGGGGGKRKKKKKKKKEKSWIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	189	2.2.26 [Sep-21-2011]
Q7KVW5	927	Small conductance calcium	no	N/A	0.407	0.083	0.707	2e-33
Q9EQR3	537	Small conductance calcium	yes	N/A	0.407	0.143	0.613	1e-27
P70605	732	Small conductance calcium	no	N/A	0.407	0.105	0.575	2e-27
Q9UGI6	736	Small conductance calcium	yes	N/A	0.407	0.104	0.575	2e-27
P58392	724	Small conductance calcium	no	N/A	0.407	0.106	0.575	2e-27
Q92952	543	Small conductance calcium	no	N/A	0.407	0.141	0.603	6e-27
P70606	536	Small conductance calcium	yes	N/A	0.407	0.143	0.603	8e-27
P58391	731	Small conductance calcium	no	N/A	0.407	0.105	0.556	1e-26
P58390	574	Small conductance calcium	no	N/A	0.407	0.134	0.575	7e-26
Q9H2S1	579	Small conductance calcium	no	N/A	0.407	0.132	0.575	2e-25

>sp|Q7KVW5|KCNN_DROME Small conductance calcium-activated potassium channel protein OS=Drosophila melanogaster GN=SK PE=2 SV=2

 Score =  141 bits (356), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 76/106 (71%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKN                      
Sbjct: 735 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKN---------------------- 772

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                  AAANVLRETWLIYKHTRLVKRVN GRVRTHQRKFLLAIY
Sbjct: 773 -------AAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIY 811

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.
Drosophila melanogaster (taxid: 7227)

>sp|Q9EQR3|KCNN1_MOUSE Small conductance calcium-activated potassium channel protein 1 OS=Mus musculus GN=Kcnn1 PE=1 SV=2

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 65/106 (61%), Positives = 73/106 (68%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTRL    
Sbjct: 353 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRL---- 408

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                                    VK+ + GRVR HQRKFL AI+
Sbjct: 409 -------------------------VKKPDQGRVRKHQRKFLQAIH 429

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.

Mus musculus (taxid: 10090)

>sp|P70605|KCNN3_RAT Small conductance calcium-activated potassium channel protein 3 OS=Rattus norvegicus GN=Kcnn3 PE=2 SV=3

 Score =  121 bits (304), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/106 (57%), Positives = 73/106 (68%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHT      
Sbjct: 534 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHT------ 587

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                                  +L+K+++  +VR HQRKFL AI+
Sbjct: 588 -----------------------KLLKKIDHAKVRKHQRKFLQAIH 610

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.

Rattus norvegicus (taxid: 10116)

>sp|Q9UGI6|KCNN3_HUMAN Small conductance calcium-activated potassium channel protein 3 OS=Homo sapiens GN=KCNN3 PE=2 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/106 (57%), Positives = 73/106 (68%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHT      
Sbjct: 538 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHT------ 591

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                                  +L+K+++  +VR HQRKFL AI+
Sbjct: 592 -----------------------KLLKKIDHAKVRKHQRKFLQAIH 614

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.

Homo sapiens (taxid: 9606)

>sp|P58392|KCNN3_PIG Small conductance calcium-activated potassium channel protein 3 OS=Sus scrofa GN=KCNN3 PE=2 SV=1

 Score =  121 bits (304), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 61/106 (57%), Positives = 73/106 (68%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHT      
Sbjct: 526 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHT------ 579

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                                  +L+K+++  +VR HQRKFL AI+
Sbjct: 580 -----------------------KLLKKIDHAKVRKHQRKFLQAIH 602

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.

Sus scrofa (taxid: 9823)

>sp|Q92952|KCNN1_HUMAN Small conductance calcium-activated potassium channel protein 1 OS=Homo sapiens GN=KCNN1 PE=2 SV=2

 Score =  120 bits (300), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 72/106 (67%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTR     
Sbjct: 356 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTR----- 410

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                                   LVK+ +  RVR HQRKFL AI+
Sbjct: 411 ------------------------LVKKPDQARVRKHQRKFLQAIH 432

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.

Homo sapiens (taxid: 9606)

>sp|P70606|KCNN1_RAT Small conductance calcium-activated potassium channel protein 1 OS=Rattus norvegicus GN=Kcnn1 PE=1 SV=2

 Score =  119 bits (299), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 64/106 (60%), Positives = 72/106 (67%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTR     
Sbjct: 352 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTR----- 406

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                                   LVK+ +  RVR HQRKFL AI+
Sbjct: 407 ------------------------LVKKPDQSRVRKHQRKFLQAIH 428

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.

Rattus norvegicus (taxid: 10116)

>sp|P58391|KCNN3_MOUSE Small conductance calcium-activated potassium channel protein 3 OS=Mus musculus GN=Kcnn3 PE=2 SV=1

 Score =  119 bits (299), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 59/106 (55%), Positives = 72/106 (67%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAA NVLRETWL+YKHT      
Sbjct: 533 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAATNVLRETWLVYKHT------ 586

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                                  +L+K+++  +VR HQRKFL AI+
Sbjct: 587 -----------------------KLLKKIDHAKVRKHQRKFLQAIH 609

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.

Mus musculus (taxid: 10090)

>sp|P58390|KCNN2_MOUSE Small conductance calcium-activated potassium channel protein 2 OS=Mus musculus GN=Kcnn2 PE=2 SV=1

 Score =  116 bits (291), Expect = 7e-26,   Method: Composition-based stats.
 Identities = 61/106 (57%), Positives = 73/106 (68%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYK+T+     
Sbjct: 379 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKNTK----- 433

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                                   LVK+++  +VR HQRKFL AI+
Sbjct: 434 ------------------------LVKKIDHAKVRKHQRKFLQAIH 455

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.

Mus musculus (taxid: 10090)

>sp|Q9H2S1|KCNN2_HUMAN Small conductance calcium-activated potassium channel protein 2 OS=Homo sapiens GN=KCNN2 PE=2 SV=2

 Score =  115 bits (287), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/106 (57%), Positives = 73/106 (68%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYK+T      
Sbjct: 384 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKNT------ 437

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                                  +LVK+++  +VR HQRKFL AI+
Sbjct: 438 -----------------------KLVKKIDHAKVRKHQRKFLQAIH 460

Forms a voltage-independent potassium channel activated by intracellular calcium. Activation is followed by membrane hyperpolarization. Thought to regulate neuronal excitability by contributing to the slow component of synaptic afterhyperpolarization. The channel is blocked by apamin.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
357612961	674	calcium-activated potassium channel [Dan	0.560	0.157	0.692	4e-33
158293140	617	AGAP010503-PA [Anopheles gambiae str. PE	0.407	0.124	0.707	1e-32
157113470	639	calcium-activated potassium channel [Aed	0.407	0.120	0.707	2e-32
345482878	766	PREDICTED: small conductance calcium-act	0.407	0.100	0.707	2e-32
328706604	666	PREDICTED: small conductance calcium-act	0.407	0.115	0.716	4e-32
170045691	635	calcium-activated potassium channel [Cul	0.407	0.121	0.707	4e-32
442615206	979	small conductance calcium-activated pota	0.407	0.078	0.707	4e-32
194888714	989	GG18757 [Drosophila erecta] gi|190648609	0.407	0.077	0.707	5e-32
91082629	821	PREDICTED: similar to small conductance	0.407	0.093	0.707	5e-32
195565182	262	GD16728 [Drosophila simulans] gi|1942035	0.407	0.293	0.707	6e-32

>gi|357612961|gb|EHJ68250.1| calcium-activated potassium channel [Danaus plexippus]

 Score =  146 bits (369), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 79/114 (69%), Positives = 86/114 (75%), Gaps = 8/114 (7%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKR     A ++       + TR  K V
Sbjct: 407 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRGAGCTALLVTVASRKLELTRAEKHV 466

Query: 144 N--------AGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
           +          +LKNAAANVLRETWLIYKHTRLVKRV+ GRVRTHQRKFLLAIY
Sbjct: 467 HNFMMETQLTKKLKNAAANVLRETWLIYKHTRLVKRVHPGRVRTHQRKFLLAIY 520

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293140|ref|XP_314474.4| AGAP010503-PA [Anopheles gambiae str. PEST] gi|157016815|gb|EAA09972.4| AGAP010503-PA [Anopheles gambiae str. PEST]

 Score =  144 bits (364), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 76/106 (71%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKN                      
Sbjct: 347 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKN---------------------- 384

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                  AAANVLRETWLIYKHTRLVKRVN GRVRTHQRKFLLAIY
Sbjct: 385 -------AAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIY 423

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113470|ref|XP_001657844.1| calcium-activated potassium channel [Aedes aegypti] gi|108877731|gb|EAT41956.1| AAEL006455-PA [Aedes aegypti]

 Score =  144 bits (363), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 76/106 (71%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKN                      
Sbjct: 366 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKN---------------------- 403

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                  AAANVLRETWLIYKHTRLVKRVN GRVRTHQRKFLLAIY
Sbjct: 404 -------AAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIY 442

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345482878|ref|XP_001603381.2| PREDICTED: small conductance calcium-activated potassium channel protein-like [Nasonia vitripennis]

 Score =  144 bits (362), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 76/106 (71%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKN                      
Sbjct: 443 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKN---------------------- 480

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                  AAANVLRETWLIYKHTRLVKRVN GRVRTHQRKFLLAIY
Sbjct: 481 -------AAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIY 519

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328706604|ref|XP_001945703.2| PREDICTED: small conductance calcium-activated potassium channel protein-like [Acyrthosiphon pisum]

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 77/106 (72%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRKMEL+RAEKHVHNFMMDTQLTKRLKNA                     
Sbjct: 354 GCTALLVAVVSRKMELSRAEKHVHNFMMDTQLTKRLKNA--------------------- 392

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                   AANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY
Sbjct: 393 --------AANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 430

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170045691|ref|XP_001850432.1| calcium-activated potassium channel [Culex quinquefasciatus] gi|167868642|gb|EDS32025.1| calcium-activated potassium channel [Culex quinquefasciatus]

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 76/106 (71%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKN                      
Sbjct: 365 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKN---------------------- 402

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                  AAANVLRETWLIYKHTRLVKRVN GRVRTHQRKFLLAIY
Sbjct: 403 -------AAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIY 441

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442615206|ref|NP_001259252.1| small conductance calcium-activated potassium channel, isoform P [Drosophila melanogaster] gi|440216448|gb|AGB95098.1| small conductance calcium-activated potassium channel, isoform P [Drosophila melanogaster]

 Score =  142 bits (359), Expect = 4e-32,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 76/106 (71%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKN                      
Sbjct: 734 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKN---------------------- 771

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                  AAANVLRETWLIYKHTRLVKRVN GRVRTHQRKFLLAIY
Sbjct: 772 -------AAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIY 810

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194888714|ref|XP_001976960.1| GG18757 [Drosophila erecta] gi|190648609|gb|EDV45887.1| GG18757 [Drosophila erecta]

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 76/106 (71%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKN                      
Sbjct: 743 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKN---------------------- 780

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                  AAANVLRETWLIYKHTRLVKRVN GRVRTHQRKFLLAIY
Sbjct: 781 -------AAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIY 819

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082629|ref|XP_969474.1| PREDICTED: similar to small conductance calcium-activated potassium channel CG10706-PF [Tribolium castaneum]

 Score =  142 bits (359), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 75/106 (70%), Positives = 76/106 (71%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKN                      
Sbjct: 619 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKN---------------------- 656

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                  AAANVLRETWLIYKHTRLVKRVN GRVRTHQRKFLLAIY
Sbjct: 657 -------AAANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIY 695

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195565182|ref|XP_002106183.1| GD16728 [Drosophila simulans] gi|194203555|gb|EDX17131.1| GD16728 [Drosophila simulans]

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 75/106 (70%), Positives = 76/106 (71%), Gaps = 29/106 (27%)

Query: 84  GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
           GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKNA                     
Sbjct: 50  GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKNA--------------------- 88

Query: 144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                   AANVLRETWLIYKHTRLVKRVN GRVRTHQRKFLLAIY
Sbjct: 89  --------AANVLRETWLIYKHTRLVKRVNPGRVRTHQRKFLLAIY 126

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	189
FB|FBgn0029761	927	SK "small conductance calcium-	0.428	0.087	0.790	1e-27
MGI|MGI:1933993	537	Kcnn1 "potassium intermediate/	0.486	0.171	0.659	7.8e-26
UNIPROTKB|F1LR91	428	LOC100360811 "Protein LOC10036	0.349	0.154	0.818	2.5e-25
RGD|2962	536	Kcnn1 "potassium intermediate/	0.486	0.171	0.648	2.7e-25
UNIPROTKB|F1LM76	574	LOC100360811 "Protein LOC10036	0.486	0.160	0.648	3.5e-25
UNIPROTKB|Q86VF9	418	KCNN3 "Small conductance calci	0.349	0.157	0.772	5.9e-25
RGD|2321347	529	LOC100360811 "potassium interm	0.470	0.168	0.648	7.2e-25
UNIPROTKB|E1BGY2	543	KCNN1 "Uncharacterized protein	0.486	0.169	0.638	7.9e-25
UNIPROTKB|Q92952	543	KCNN1 "Small conductance calci	0.486	0.169	0.638	7.9e-25
UNIPROTKB|F1S923	543	KCNN1 "Uncharacterized protein	0.486	0.169	0.638	1e-24

FB|FBgn0029761 SK "small conductance calcium-activated potassium channel" [Drosophila melanogaster (taxid:7227)]

 Score = 321 (118.1 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 64/81 (79%), Positives = 69/81 (85%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTALLVAVVSRK+ELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV
Sbjct:   735 GCTALLVAVVSRKLELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 794

Query:   144 NAGRLKNAAANVLRETWLIYK 164
             N GR++      L   + + K
Sbjct:   795 NPGRVRTHQRKFLLAIYALRK 815

GO:0015269 "calcium-activated potassium channel activity" evidence=ISS

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=ISS;IDA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0016057 "regulation of membrane potential in photoreceptor cell" evidence=IDA

GO:0009881 "photoreceptor activity" evidence=IDA

MGI|MGI:1933993 Kcnn1 "potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1" [Mus musculus (taxid:10090)]

 Score = 298 (110.0 bits), Expect = 7.8e-26, P = 7.8e-26
 Identities = 62/94 (65%), Positives = 74/94 (78%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTRLVK+ 
Sbjct:   353 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKP 412

Query:   144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRV 177
             + GR++      L+      K  R VK +  G+V
Sbjct:   413 DQGRVRKHQRKFLQAIHQAQK-LRSVK-IEQGKV 444

GO:0005216 "ion channel activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006813 "potassium ion transport" evidence=IEA

GO:0015269 "calcium-activated potassium channel activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=ISO

GO:0043025 "neuronal cell body" evidence=ISO

GO:0046982 "protein heterodimerization activity" evidence=ISO

UNIPROTKB|F1LR91 LOC100360811 "Protein LOC100360811" [Rattus norvegicus (taxid:10116)]

 Score = 288 (106.4 bits), Expect = 2.5e-25, P = 2.5e-25
 Identities = 54/66 (81%), Positives = 63/66 (95%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTRLVK+ 
Sbjct:   353 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKP 412

Query:   144 NAGRLK 149
             +  R++
Sbjct:   413 DQSRVR 418

GO:0005516 "calmodulin binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=IEA

RGD|2962 Kcnn1 "potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1" [Rattus norvegicus (taxid:10116)]

 Score = 293 (108.2 bits), Expect = 2.7e-25, P = 2.7e-25
 Identities = 61/94 (64%), Positives = 73/94 (77%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTRLVK+ 
Sbjct:   352 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKP 411

Query:   144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRV 177
             +  R++      L+      K  R VK +  G+V
Sbjct:   412 DQSRVRKHQRKFLQAIHQAQK-LRTVK-IEQGKV 443

GO:0005516 "calmodulin binding" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA;ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=IMP

GO:0043025 "neuronal cell body" evidence=IDA

GO:0046982 "protein heterodimerization activity" evidence=IMP

UNIPROTKB|F1LM76 LOC100360811 "Protein LOC100360811" [Rattus norvegicus (taxid:10116)]

 Score = 293 (108.2 bits), Expect = 3.5e-25, P = 3.5e-25
 Identities = 61/94 (64%), Positives = 73/94 (77%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTRLVK+ 
Sbjct:   390 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKP 449

Query:   144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRV 177
             +  R++      L+      K  R VK +  G+V
Sbjct:   450 DQSRVRKHQRKFLQAIHQAQK-LRTVK-IEQGKV 481

GO:0005516 "calmodulin binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=IEA

UNIPROTKB|Q86VF9 KCNN3 "Small conductance calcium-activated potassium channel protein 3" [Homo sapiens (taxid:9606)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 51/66 (77%), Positives = 64/66 (96%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHT+L+K++
Sbjct:   220 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRIKNAAANVLRETWLIYKHTKLLKKI 279

Query:   144 NAGRLK 149
             +  +++
Sbjct:   280 DHAKVR 285

GO:0005516 "calmodulin binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

RGD|2321347 LOC100360811 "potassium intermediate/small conductance calcium-activated channel, subfamily N, member 1-like" [Rattus norvegicus (taxid:10116)]

 Score = 289 (106.8 bits), Expect = 7.2e-25, P = 7.2e-25
 Identities = 61/94 (64%), Positives = 75/94 (79%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTRLVK+ 
Sbjct:   348 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKP 407

Query:   144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRV 177
             +  R++      L+    I++  R VK +  G+V
Sbjct:   408 DQSRVRKHQRKFLQA---IHQ-LRTVK-IEQGKV 436

GO:0005516 "calmodulin binding" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=IEA

UNIPROTKB|E1BGY2 KCNN1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 289 (106.8 bits), Expect = 7.9e-25, P = 7.9e-25
 Identities = 60/94 (63%), Positives = 73/94 (77%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTRLVK+ 
Sbjct:   356 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKP 415

Query:   144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRV 177
             +  R++      L+      K  R VK +  G++
Sbjct:   416 DQARVRKHQRKFLQAIHQAQK-LRSVK-IEQGKL 447

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q92952 KCNN1 "Small conductance calcium-activated potassium channel protein 1" [Homo sapiens (taxid:9606)]

 Score = 289 (106.8 bits), Expect = 7.9e-25, P = 7.9e-25
 Identities = 60/94 (63%), Positives = 73/94 (77%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTRLVK+ 
Sbjct:   356 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKP 415

Query:   144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRV 177
             +  R++      L+      K  R VK +  G++
Sbjct:   416 DQARVRKHQRKFLQAIHQAQK-LRSVK-IEQGKL 447

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0006813 "potassium ion transport" evidence=TAS

GO:0008076 "voltage-gated potassium channel complex" evidence=TAS

GO:0015269 "calcium-activated potassium channel activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0007268 "synaptic transmission" evidence=TAS

UNIPROTKB|F1S923 KCNN1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 288 (106.4 bits), Expect = 1.0e-24, P = 1.0e-24
 Identities = 60/94 (63%), Positives = 73/94 (77%)

Query:    84 GCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRV 143
             GCTAL+VAVV+RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYKHTRLVK+ 
Sbjct:   356 GCTALVVAVVARKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKHTRLVKKP 415

Query:   144 NAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRV 177
             +  R++      L+      K  R VK +  G++
Sbjct:   416 DHARVRKHQRKFLQAIHQAQK-LRSVK-IEQGKL 447

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

GO:0016286 "small conductance calcium-activated potassium channel activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UGI6	KCNN3_HUMAN	No assigned EC number	0.5754	0.4074	0.1046	yes	N/A
Q9EQR3	KCNN1_MOUSE	No assigned EC number	0.6132	0.4074	0.1433	yes	N/A
P70606	KCNN1_RAT	No assigned EC number	0.6037	0.4074	0.1436	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	189
smart01053	76	smart01053, CaMBD, Calmodulin binding domain	4e-16
pfam02888	76	pfam02888, CaMBD, Calmodulin binding domain	2e-14

>gnl|CDD|198121 smart01053, CaMBD, Calmodulin binding domain

 Score = 69.0 bits (169), Expect = 4e-16
 Identities = 33/43 (76%), Positives = 39/43 (90%)

Query: 147 RLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
           R+KNAAANVLRETWLIYKHT+LVK+ + GR+R HQRKFL AI+
Sbjct: 7   RVKNAAANVLRETWLIYKHTKLVKKGDQGRLRKHQRKFLQAIH 49

Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+. These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM). CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other. Length = 76

>gnl|CDD|111742 pfam02888, CaMBD, Calmodulin binding domain

 Score = 64.8 bits (158), Expect = 2e-14
 Identities = 29/43 (67%), Positives = 35/43 (81%)

Query: 147 RLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
             KNAAANVL+ETWLIYKHT+LV + +  R+R HQRKFL AI+
Sbjct: 7   EHKNAAANVLQETWLIYKHTKLVSKGDQQRLRKHQRKFLQAIH 49

Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+. These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM). CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other. Length = 76

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	189
KOG3684|consensus	489		100.0
PF02888	77	CaMBD: Calmodulin binding domain; InterPro: IPR004	99.81
KOG3684|consensus	489		97.81
PF02888	77	CaMBD: Calmodulin binding domain; InterPro: IPR004	97.72

>KOG3684|consensus

Probab=100.00  E-value=1.6e-37  Score=286.47  Aligned_cols=87  Identities=66%  Similarity=0.958  Sum_probs=82.3

Q ss_pred             cchhhhhhcchhhHHHHHHhhhccccccchhhhhhhhhchhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHH
Q psy12530         74 SWIRPCYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAA  153 (189)
Q Consensus        74 ~~~~t~~~G~gcTAllVAVvaRKLELTraEKHVhnFMmdtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa  153 (189)
                      -+|.|||||+||||+|||||+||||||+|||||||||||+|||||+||||||||||||+||||                 
T Consensus       317 v~l~tGivGa~~sallvAvisRKLeLt~aEKhVhNFMmDtqLTk~~KnAAA~VLqeTW~i~K~-----------------  379 (489)
T KOG3684|consen  317 VALLTGIVGAGCSSLLVAVIARKLELTKAEKHVHNFMMDTQLTKEHKNAAANVLQETWLIYKH-----------------  379 (489)
T ss_pred             HHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence            589999999999999999999999999999999999999999999999999999999888755                 


Q ss_pred             HHHHHHHHHhhhhhhhhccCcchhhhhhhhhhhhhC
Q psy12530        154 NVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY  189 (189)
Q Consensus       154 ~vLrEaw~~yKHtRL~~r~n~~~~R~HQRk~L~AI~  189 (189)
                                  +||++++|++++|+||||||.|||
T Consensus       380 ------------trl~~k~~~~rlR~hQRkfL~AI~  403 (489)
T KOG3684|consen  380 ------------TKLVSKGDQARLRKHQRKFLQAIH  403 (489)
T ss_pred             ------------hhhhcccchHHHHHHHHHHHHHHH
Confidence                        577789999999999999999997

>PF02888 CaMBD: Calmodulin binding domain; InterPro: IPR004178 Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+

Probab=99.81  E-value=1.1e-20  Score=140.11  Aligned_cols=49  Identities=82%  Similarity=1.121  Sum_probs=41.3

Q ss_pred             chhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHHHHHHhhhhhhhhccCcchhhhhhhhhhhhhC
Q psy12530        112 DTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY  189 (189)
Q Consensus       112 dtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrEaw~~yKHtRL~~r~n~~~~R~HQRk~L~AI~  189 (189)
                      |+|||||+||||||||||||+|||                             |++|+++.|++++|+|||+||+|||
T Consensus         1 DtqltKr~K~aAAnVLretWliyK-----------------------------~tkl~~~~~~~r~R~HQRkfL~AI~   49 (77)
T PF02888_consen    1 DTQLTKRVKNAAANVLRETWLIYK-----------------------------HTKLVKRRDHARVRKHQRKFLQAIH   49 (77)
T ss_dssp             -CHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHS-SSS-HHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHH-----------------------------hccccCccchhhHHHHHHHHHHHHH
Confidence            789999999999999988887765                             5577789999999999999999996

These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM) []. CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known []. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other.; GO: 0005516 calmodulin binding, 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016021 integral to membrane; PDB: 1G4Y_B 1QX7_D 3SJQ_D 2PNV_A 1KKD_A.

>KOG3684|consensus

Probab=97.81  E-value=1.8e-05  Score=75.00  Aligned_cols=76  Identities=21%  Similarity=0.180  Sum_probs=52.8

Q ss_pred             hhhcchhhHHHHHHhhhccccccchhhhhhhhhchhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHH
Q psy12530         79 CYLREGCTALLVAVVSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRE  158 (189)
Q Consensus        79 ~~~G~gcTAllVAVvaRKLELTraEKHVhnFMmdtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrE  158 (189)
                      |+..+.|.|...|++...+.......+.+.++                         |-+|+|...++|+|++|||||||
T Consensus       318 ~l~tGivGa~~sallvAvisRKLeLt~aEKhV-------------------------hNFMmDtqLTk~~KnAAA~VLqe  372 (489)
T KOG3684|consen  318 ALLTGIVGAGCSSLLVAVIARKLELTKAEKHV-------------------------HNFMMDTQLTKEHKNAAANVLQE  372 (489)
T ss_pred             HHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH-------------------------HHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455567777777777777666555554443                         44799999999999999999999


Q ss_pred             HHHHhhhhhhhhccCcchhhhhhhhhhhh
Q psy12530        159 TWLIYKHTRLVKRVNAGRVRTHQRKFLLA  187 (189)
Q Consensus       159 aw~~yKHtRL~~r~n~~~~R~HQRk~L~A  187 (189)
                      +|    |..+..|.    +++++...|+.
T Consensus       373 TW----~i~K~trl----~~k~~~~rlR~  393 (489)
T KOG3684|consen  373 TW----LIYKHTKL----VSKGDQARLRK  393 (489)
T ss_pred             HH----HHHHHhhh----hcccchHHHHH
Confidence            99    44433333    36666665554

>PF02888 CaMBD: Calmodulin binding domain; InterPro: IPR004178 Small-conductance Ca2+-activated K+ channels (SK channels) are independent of voltage and gated solely by intracellular Ca2+

Probab=97.72  E-value=2e-05  Score=58.96  Aligned_cols=20  Identities=65%  Similarity=0.870  Sum_probs=17.9

Q ss_pred             hhhchhhhhHHHHHHHHHHH
Q psy12530        141 KRVNAGRLKNAAANVLRETW  160 (189)
Q Consensus       141 D~v~tRR~k~aAa~vLrEaw  160 (189)
                      |...++|++++|+|||||+|
T Consensus         1 DtqltKr~K~aAAnVLretW   20 (77)
T PF02888_consen    1 DTQLTKRVKNAAANVLRETW   20 (77)
T ss_dssp             -CHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH
Confidence            56778999999999999999

These membrane channels are heteromeric complexes that comprise pore-forming alpha-subunits and the Ca2+-binding protein calmodulin (CaM) []. CaM binds to the SK channel through this the CaM-binding domain (CaMBD), which is located in an intracellular region of the alpha-subunit immediately carboxy-terminal to the pore. Channel opening is triggered when Ca2+ binds the EF hands in the N-lobe of CaM. The structure of this domain complexed with CaM is known []. This domain forms an elongated dimer with a CaM molecule bound at each end; each CaM wraps around three alpha-helices, two from one CaMBD subunit and one from the other.; GO: 0005516 calmodulin binding, 0015269 calcium-activated potassium channel activity, 0006813 potassium ion transport, 0016021 integral to membrane; PDB: 1G4Y_B 1QX7_D 3SJQ_D 2PNV_A 1KKD_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	189
1kkd_A	102	Solution Structure Of The Calmodulin Binding Domain		2e-21
1g4y_B	101	1.60 A Crystal Structure Of The Gating Domain From		4e-21
1qx7_D	85	Crystal Structure Of Apocam Bound To The Gating Dom		9e-13
3sjq_C	87	Crystal Structure Of A Small Conductance Potassium		1e-12

>pdb|1KKD|A Chain A, Solution Structure Of The Calmodulin Binding Domain (Cambd) Of Small Conductance Ca2+-Activated Potassium Channels (Sk2) Length = 102

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 29/97 (29%)
Query: 93  VSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAA 152
           + RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYK+T               
Sbjct: 1   MGRKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKNT--------------- 45
Query: 153 ANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                         +LVK+++  +VR HQRKFL AI+
Sbjct: 46  --------------KLVKKIDHAKVRKHQRKFLQAIH 68

>pdb|1G4Y|B Chain B, 1.60 A Crystal Structure Of The Gating Domain From Small Conductance Potassium Channel Complexed With Calcium-Calmodulin Length = 101

Iteration: 1
 Score = 97.4 bits (241), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 29/97 (29%)
Query: 93  VSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAA 152
           + RK+ELT+AEKHVHNFMMDTQLTKR+KNAAANVLRETWLIYK+T               
Sbjct: 1   MGRKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKNT--------------- 45
Query: 153 ANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
                         +LVK+++  +VR HQRKFL AI+
Sbjct: 46  --------------KLVKKIDHAKVRKHQRKFLQAIH 68

>pdb|1QX7|D Chain D, Crystal Structure Of Apocam Bound To The Gating Domain Of Small Conductance Ca2+-Activated Potassium Channel Length = 85

Iteration: 1
 Score = 69.7 bits (169), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 47/80 (58%), Gaps = 29/80 (36%)
Query: 110 MMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLV 169
           MMDTQLTKR+KNA                             AANVLRETWLIYK+T+LV
Sbjct: 1   MMDTQLTKRVKNA-----------------------------AANVLRETWLIYKNTKLV 31
Query: 170 KRVNAGRVRTHQRKFLLAIY 189
           K+++  +VR HQRKFL AI+
Sbjct: 32  KKIDHAKVRKHQRKFLQAIH 51

>pdb|3SJQ|C Chain C, Crystal Structure Of A Small Conductance Potassium Channel Splice Variant Complexed With Calcium-Calmodulin Length = 87

Iteration: 1
 Score = 69.3 bits (168), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/53 (66%), Positives = 43/53 (81%), Gaps = 5/53 (9%)
Query: 137 TRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
           T+L KRV     KNAAANVLRETWLIYK+T+LVK+++  +VR HQRKFL AI+
Sbjct: 3   TQLTKRV-----KNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIH 50

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	189
1g4y_B	101	Calcium-activated potassium channel RSK2; small-co	2e-17
3sjq_C	87	Small conductance calcium-activated potassium CHA	1e-15

>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D Length = 101

 Score = 72.9 bits (178), Expect = 2e-17
 Identities = 52/97 (53%), Positives = 63/97 (64%), Gaps = 29/97 (29%)

Query: 93  VSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAA 152
           + RK+ELT+AEKHVHNFMMDTQLTK                             R+KNAA
Sbjct: 1   MGRKLELTKAEKHVHNFMMDTQLTK-----------------------------RVKNAA 31

Query: 153 ANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
           ANVLRETWLIYK+T+LVK+++  +VR HQRKFL AI+
Sbjct: 32  ANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIH 68

>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus} Length = 87

 Score = 67.7 bits (165), Expect = 1e-15
 Identities = 31/43 (72%), Positives = 39/43 (90%)

Query: 147 RLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
           R+KNAAANVLRETWLIYK+T+LVK+++  +VR HQRKFL AI+
Sbjct: 8   RVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIH 50

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	189
1g4y_B	101	Calcium-activated potassium channel RSK2; small-co	99.98
3sjq_C	87	Small conductance calcium-activated potassium CHA	99.8
1g4y_B	101	Calcium-activated potassium channel RSK2; small-co	98.08
3sjq_C	87	Small conductance calcium-activated potassium CHA	97.64

>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D

Probab=99.98  E-value=4.6e-34  Score=219.03  Aligned_cols=68  Identities=76%  Similarity=1.130  Sum_probs=44.9

Q ss_pred             hhhccccccchhhhhhhhhchhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHHHHHHhhhhhhhhcc
Q psy12530         93 VSRKMELTRAEKHVHNFMMDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRV  172 (189)
Q Consensus        93 vaRKLELTraEKHVhnFMmdtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrEaw~~yKHtRL~~r~  172 (189)
                      |+||||||+|||||||||||+|||||+||||||||||||+|||||                             +|++++
T Consensus         1 vaRKLeLtkaEKhVhnFMmD~qltk~~K~aAAnVLrEtWliyK~t-----------------------------kl~~k~   51 (101)
T 1g4y_B            1 MGRKLELTKAEKHVHNFMMDTQLTKRVKNAAANVLRETWLIYKNT-----------------------------KLVKKI   51 (101)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HSCSSC
T ss_pred             CchHHHhhHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHHHH-----------------------------hhcccc
Confidence            689999999999999999999999999999999999999887665                             666789


Q ss_pred             CcchhhhhhhhhhhhhC
Q psy12530        173 NAGRVRTHQRKFLLAIY  189 (189)
Q Consensus       173 n~~~~R~HQRk~L~AI~  189 (189)
                      |++++|+|||+||+|||
T Consensus        52 d~~r~R~HQRkfL~AI~   68 (101)
T 1g4y_B           52 DHAKVRKHQRKFLQAIH   68 (101)
T ss_dssp             CHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHH
Confidence            99999999999999996

>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus}

Probab=99.80  E-value=1.1e-20  Score=141.83  Aligned_cols=50  Identities=76%  Similarity=1.103  Sum_probs=43.6

Q ss_pred             hchhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHHHHHHhhhhhhhhccCcchhhhhhhhhhhhhC
Q psy12530        111 MDTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY  189 (189)
Q Consensus       111 mdtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrEaw~~yKHtRL~~r~n~~~~R~HQRk~L~AI~  189 (189)
                      ||||+|||+|+||||||||||+||||                             ++|++++|++++|+|||+||+|||
T Consensus         1 mDtqltKrvK~AAAnVLrEtWliyK~-----------------------------t~L~~k~~~~r~R~HQRk~L~AI~   50 (87)
T 3sjq_C            1 MDTQLTKRVKNAAANVLRETWLIYKN-----------------------------TKLVKKIDHAKVRKHQRKFLQAIH   50 (87)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHSCSSCCHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhHHHHHHHHh-----------------------------hhcccCCcHHHHHHHhHHHHHHHH
Confidence            79999999999999999999888765                             577789999999999999999996

>1g4y_B Calcium-activated potassium channel RSK2; small-conductance calcium-activated potassium channel, channel gating, signalin; 1.60A {Rattus norvegicus} SCOP: f.15.1.1 PDB: 1kkd_A 1qx7_D

Probab=98.08  E-value=1.2e-06  Score=67.31  Aligned_cols=28  Identities=61%  Similarity=0.901  Sum_probs=22.6

Q ss_pred             hhhhhhhhchhhhhHHHHHHHHHHHHHh
Q psy12530        136 HTRLVKRVNAGRLKNAAANVLRETWLIY  163 (189)
Q Consensus       136 hTRlvD~v~tRR~k~aAa~vLrEaw~~y  163 (189)
                      |-||||+..++|++++|||||||+|+||
T Consensus        15 hnFMmD~qltk~~K~aAAnVLrEtWliy   42 (101)
T 1g4y_B           15 HNFMMDTQLTKRVKNAAANVLRETWLIY   42 (101)
T ss_dssp             -----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHhHHHHHHHHHHHHHHHHHH
Confidence            6789999999999999999999999987

>3sjq_C Small conductance calcium-activated potassium CHA protein 2; protein-protein complex, EF hand, calmodulin, calcium bindin binding protein; HET: PHU; 1.90A {Rattus norvegicus}

Probab=97.64  E-value=1.9e-05  Score=59.27  Aligned_cols=23  Identities=65%  Similarity=0.895  Sum_probs=19.6

Q ss_pred             hhhhchhhhhHHHHHHHHHHHHH
Q psy12530        140 VKRVNAGRLKNAAANVLRETWLI  162 (189)
Q Consensus       140 vD~v~tRR~k~aAa~vLrEaw~~  162 (189)
                      ||+..++|++++|+|||||+|+|
T Consensus         1 mDtqltKrvK~AAAnVLrEtWli   23 (87)
T 3sjq_C            1 MDTQLTKRVKNAAANVLRETWLI   23 (87)
T ss_dssp             --CHHHHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhHHHHHH
Confidence            68889999999999999999954

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	189
d1g4yb_	82	f.15.1.1 (B:) Small-conductance potassium channel	1e-16

>d1g4yb_ f.15.1.1 (B:) Small-conductance potassium channel {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 82

class: Membrane and cell surface proteins and peptides
fold: Small-conductance potassium channel
superfamily: Small-conductance potassium channel
family: Small-conductance potassium channel
domain: Small-conductance potassium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 69.1 bits (169), Expect = 1e-16
 Identities = 31/43 (72%), Positives = 39/43 (90%)

Query: 147 RLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY 189
           R+KNAAANVLRETWLIYK+T+LVK+++  +VR HQRKFL AI+
Sbjct: 7   RVKNAAANVLRETWLIYKNTKLVKKIDHAKVRKHQRKFLQAIH 49

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	189
d1g4yb_	82	Small-conductance potassium channel {Rat (Rattus n	99.84
d1g4yb_	82	Small-conductance potassium channel {Rat (Rattus n	97.91

>d1g4yb_ f.15.1.1 (B:) Small-conductance potassium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Membrane and cell surface proteins and peptides
fold: Small-conductance potassium channel
superfamily: Small-conductance potassium channel
family: Small-conductance potassium channel
domain: Small-conductance potassium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.84  E-value=2e-22  Score=148.21  Aligned_cols=49  Identities=76%  Similarity=1.096  Sum_probs=42.9

Q ss_pred             chhhhHHHHHHHHHhHhHhhhhhhhhhhhhhhchhhhhHHHHHHHHHHHHHhhhhhhhhccCcchhhhhhhhhhhhhC
Q psy12530        112 DTQLTKRLKNAAANVLRETWLIYKHTRLVKRVNAGRLKNAAANVLRETWLIYKHTRLVKRVNAGRVRTHQRKFLLAIY  189 (189)
Q Consensus       112 dtqLTKrvKnAAAnVLRETWliyKhTRlvD~v~tRR~k~aAa~vLrEaw~~yKHtRL~~r~n~~~~R~HQRk~L~AI~  189 (189)
                      |+|+||++||||||||||||+||                             |||+|++++|++++|+||||||+|||
T Consensus         1 D~qltK~~K~aAAnVLrEtWliy-----------------------------K~tklv~k~d~~~~R~HQRkfL~AIh   49 (82)
T d1g4yb_           1 DTQLTKRVKNAAANVLRETWLIY-----------------------------KNTKLVKKIDHAKVRKHQRKFLQAIH   49 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHH-----------------------------HHHHSCSSCCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHH-----------------------------HHhhhcccCChHHHHHHHHHHHHHHH
Confidence            78888999988888888887776                             55688899999999999999999996

>d1g4yb_ f.15.1.1 (B:) Small-conductance potassium channel {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Membrane and cell surface proteins and peptides
fold: Small-conductance potassium channel
superfamily: Small-conductance potassium channel
family: Small-conductance potassium channel
domain: Small-conductance potassium channel
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.91  E-value=1.9e-06  Score=62.53  Aligned_cols=20  Identities=65%  Similarity=0.870  Sum_probs=18.5

Q ss_pred             hhhchhhhhHHHHHHHHHHH
Q psy12530        141 KRVNAGRLKNAAANVLRETW  160 (189)
Q Consensus       141 D~v~tRR~k~aAa~vLrEaw  160 (189)
                      |+..+++++++|||||||+|
T Consensus         1 D~qltK~~K~aAAnVLrEtW   20 (82)
T d1g4yb_           1 DTQLTKRVKNAAANVLRETW   20 (82)
T ss_dssp             CHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHH
Confidence            56788999999999999999