Psyllid ID: psy12537

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MRGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcccHHHHccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccHHHHcccccEcccccccccccccc
Coil and Loop (DISEMBL)
MRGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARlsqdgmggvkWDYIHGLlgnaiyggridnaqDMKVLSSYLQFYFssnvaktastplapgvvlpsstnlg
Flexible Loop (DISEMBL)
mrgikrnlqrtyaSWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAktastplapgvvlpsstnlg
Low Complexity Region (SEG)
MRGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDlnaalnilnaRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLG
Disordered region (IsUnstruct)
***********************DQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAK*******************
Disordered Region (DISOPRED)
*RGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSS****
Disordered Region (DISEMBL)
*********RTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLG
Disordered Region (DISPRO)
*RGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSS****
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRGIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPSSTNLG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q8NCM8	4307	Cytoplasmic dynein 2 heav	yes	N/A	0.821	0.026	0.566	7e-35
Q45VK7	4306	Cytoplasmic dynein 2 heav	yes	N/A	0.821	0.026	0.516	4e-33
Q9JJ79	4306	Cytoplasmic dynein 2 heav	yes	N/A	0.821	0.026	0.516	7e-33
Q27802	4318	Cytoplasmic dynein 2 heav	N/A	N/A	0.864	0.028	0.504	1e-29
Q9SMH5	4334	Cytoplasmic dynein 2 heav	N/A	N/A	0.957	0.030	0.450	3e-28
Q19542	4171	Cytoplasmic dynein 2 heav	yes	N/A	0.942	0.031	0.413	7e-24
P37276	4639	Dynein heavy chain, cytop	yes	N/A	0.821	0.024	0.419	6e-23
P34036	4730	Dynein heavy chain, cytop	yes	N/A	0.957	0.028	0.397	1e-22
Q9JHU4	4644	Cytoplasmic dynein 1 heav	no	N/A	0.821	0.024	0.362	4e-20
Q14204	4646	Cytoplasmic dynein 1 heav	no	N/A	0.821	0.024	0.362	4e-20

>sp|Q8NCM8|DYHC2_HUMAN Cytoplasmic dynein 2 heavy chain 1 OS=Homo sapiens GN=DYNC2H1 PE=1 SV=4

 Score =  145 bits (366), Expect = 7e-35,   Method: Composition-based stats.
 Identities = 68/120 (56%), Positives = 89/120 (74%), Gaps = 5/120 (4%)

Query: 3    GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            G+K+NL RTY SW+    +K ++T +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3835 GLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3894

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3895 DLRAGYNIIDRLF--DGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 3952

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. May play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.
Homo sapiens (taxid: 9606)

>sp|Q45VK7|DYHC2_MOUSE Cytoplasmic dynein 2 heavy chain 1 OS=Mus musculus GN=Dync2h1 PE=1 SV=1

 Score =  139 bits (351), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 62/120 (51%), Positives = 88/120 (73%), Gaps = 5/120 (4%)

Query: 3    GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3834 GLKKNLMRTYESWTPEQISKRDNIHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3893

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A  ++++     DG   V+W+++HGLL N+IYGGR+DN  D++VL SYL+ +F+S++
Sbjct: 3894 DLRAGYHVIDRLF--DGTKDVQWEFVHGLLENSIYGGRVDNYFDLRVLQSYLKQFFNSSI 3951

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. According to PubMed:8666668, it may play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.

Mus musculus (taxid: 10090)

>sp|Q9JJ79|DYHC2_RAT Cytoplasmic dynein 2 heavy chain 1 OS=Rattus norvegicus GN=Dync2h1 PE=1 SV=1

 Score =  139 bits (349), Expect = 7e-33,   Method: Composition-based stats.
 Identities = 62/120 (51%), Positives = 88/120 (73%), Gaps = 5/120 (4%)

Query: 3    GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR +IPQGW KFYEF+ S
Sbjct: 3834 GLKKNLMRTYESWTPEQISKKDNIHRAHALFSLAWFHAACQERRNFIPQGWTKFYEFSLS 3893

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A  ++++     DG   V+W+++HGLL N+IYGGRIDN  D++VL SYL+ +F+S++
Sbjct: 3894 DLRAGYHVIDRLF--DGSKDVQWEFVHGLLENSIYGGRIDNYFDLRVLQSYLKQFFNSSI 3951

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis. May play a role in transport between endoplasmic reticulum and Golgi or organization of the Golgi in cells.

Rattus norvegicus (taxid: 10116)

>sp|Q27802|DYHC2_TRIGR Cytoplasmic dynein 2 heavy chain 1 OS=Tripneustes gratilla GN=DYH1B PE=2 SV=2

 Score =  128 bits (321), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 63/125 (50%), Positives = 86/125 (68%), Gaps = 4/125 (3%)

Query: 3    GIKRNLQRTYASWSQT---KLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            GIK+NL R+Y SW+     + N+  + +ALF LAWFHA+ QERR +IPQGW KFYEF+ S
Sbjct: 3844 GIKKNLLRSYDSWTPEFIGRENNVVRAQALFALAWFHAICQERRNFIPQGWTKFYEFSMS 3903

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A  +I++ RL       V++++I+GL  NAIYGGR+DN  DM+VL SYL  YF+  +
Sbjct: 3904 DLRAGADIID-RLCHGKGKEVQFEFIYGLFENAIYGGRVDNPFDMRVLRSYLAQYFNKEM 3962

Query: 120  AKTAS 124
               +S
Sbjct: 3963 LGGSS 3967

May function as a motor for intraflagellar retrograde transport. Functions in cilia biogenesis.

Tripneustes gratilla (taxid: 7673)

>sp|Q9SMH5|DYHC2_CHLRE Cytoplasmic dynein 2 heavy chain 1 OS=Chlamydomonas reinhardtii GN=DHC1B PE=1 SV=2

 Score =  123 bits (309), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 64/142 (45%), Positives = 91/142 (64%), Gaps = 8/142 (5%)

Query: 3    GIKRNLQRTYASWSQTKLNSTDQGRA--LFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
            G+K+NLQRTY +WS   L S    RA  LF LAWFHA++QERRTYIPQGW KFYEF+ +D
Sbjct: 3848 GMKKNLQRTYEAWSAEYLASGPPIRAQLLFVLAWFHAVVQERRTYIPQGWTKFYEFSFAD 3907

Query: 61   LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVA 120
            L + ++++   L+       +W  + GLL +AIYGGR+DN  D +VL ++L+  FS+   
Sbjct: 3908 LRSGMDVIT--LATRAGTAPQWPLLLGLLDDAIYGGRLDNPFDSQVLLTFLRRLFSAETV 3965

Query: 121  KTASTPLAP----GVVLPSSTN 138
              A   + P     VV+P++ +
Sbjct: 3966 GAAGGKVRPLPGSKVVVPTTNH 3987

May function as a motor for intraflagellar retrograde transport. Functions in flagellar biogenesis.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|Q19542|DYHC2_CAEEL Cytoplasmic dynein 2 heavy chain 1 OS=Caenorhabditis elegans GN=che-3 PE=3 SV=2

 Score =  108 bits (271), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 57/138 (41%), Positives = 80/138 (57%), Gaps = 6/138 (4%)

Query: 3    GIKRNLQRTYASWSQTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLN 62
            G++ NL RTY    ++  N     +++F LAW HAL+QERRT+IPQGW KFYEF  SD+ 
Sbjct: 3718 GVRNNLLRTYTQIDRSTKNVI-TCQSIFVLAWLHALLQERRTFIPQGWTKFYEFGASDVR 3776

Query: 63   AALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYF-SSNVAK 121
             A     + + Q       W+++ G+L   IYGGRI+N  D KVL SYL   F    +  
Sbjct: 3777 VA----KSFVEQLTANKADWEFVRGILKFVIYGGRIENDFDFKVLDSYLNVLFCDEKING 3832

Query: 122  TASTPLAPGVVLPSSTNL 139
             A + L  G+ L ++TN+
Sbjct: 3833 RAGSQLVKGIDLLATTNV 3850

Function as a motor for intraflagellar retrograde transport in chemosensory neurons. Functions in cilia biogenesis.

Caenorhabditis elegans (taxid: 6239)

>sp|P37276|DYHC_DROME Dynein heavy chain, cytoplasmic OS=Drosophila melanogaster GN=Dhc64C PE=2 SV=2

 Score =  105 bits (263), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 52/124 (41%), Positives = 77/124 (62%), Gaps = 9/124 (7%)

Query: 3    GIKRNLQRTYASWSQTKLNST--DQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
            GI+ NL RT+++    ++  T  ++ R  F LAWFHA++QER  Y+P GWAK YEFN+SD
Sbjct: 4136 GIRANLLRTFSTVPAARMMKTPSERARLYFLLAWFHAIVQERLRYVPLGWAKKYEFNESD 4195

Query: 61   LNAALNILNARLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113
            L  A + L+  +    MG        V WD +  LL  +IYGG+IDN  D ++L+S+L+ 
Sbjct: 4196 LRVACDTLDTWIDTTAMGRTNLPPEKVPWDALVTLLSQSIYGGKIDNDFDQRLLTSFLKK 4255

Query: 114  YFSS 117
             F++
Sbjct: 4256 LFTA 4259

Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Drosophila melanogaster (taxid: 7227)

>sp|P34036|DYHC_DICDI Dynein heavy chain, cytoplasmic OS=Dictyostelium discoideum GN=dhcA PE=1 SV=2

 Score =  105 bits (261), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 58/146 (39%), Positives = 84/146 (57%), Gaps = 12/146 (8%)

Query: 3    GIKRNLQRTYASWSQTKLNS--TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
            G+K NL  T+     T+++    ++ R  F LAWFHA+IQER  YIP GW KF+EFND+D
Sbjct: 4243 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 4302

Query: 61   LNAALNILNARLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113
            L  AL+ ++  +     G        + W  +  +LG+ IYGGRIDN  DM++L S+L+ 
Sbjct: 4303 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 4362

Query: 114  YFSSNVAKTASTPLAP--GVVLPSST 137
             F+ + A     PL P  G+ +P  T
Sbjct: 4363 LFTPS-AFNPDFPLVPSIGLSVPEGT 4387

Cytoplasmic dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9JHU4|DYHC1_MOUSE Cytoplasmic dynein 1 heavy chain 1 OS=Mus musculus GN=Dync1h1 PE=1 SV=2

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 3    GIKRNLQRTYASWSQTKL--NSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
            G+K N+ RT++S   +++  +  ++ R  F LAWFHA+IQER  Y P GW+K YEF +SD
Sbjct: 4150 GVKANMLRTFSSIPVSRICKSPNERARLYFLLAWFHAIIQERLRYAPLGWSKKYEFGESD 4209

Query: 61   LNAALNILNARLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113
            L +A + ++  L     G        + W  +  L+  +IYGGR+DN  D ++L+++L+ 
Sbjct: 4210 LRSACDTVDTWLDDTAKGRQNISPDKIPWSALKTLMAQSIYGGRVDNEFDQRLLNTFLER 4269

Query: 114  YFSS 117
             F++
Sbjct: 4270 LFTT 4273

Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Mus musculus (taxid: 10090)

>sp|Q14204|DYHC1_HUMAN Cytoplasmic dynein 1 heavy chain 1 OS=Homo sapiens GN=DYNC1H1 PE=1 SV=5

 Score = 96.3 bits (238), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 45/124 (36%), Positives = 75/124 (60%), Gaps = 9/124 (7%)

Query: 3    GIKRNLQRTYASWSQTKL--NSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
            G+K N+ RT++S   +++  +  ++ R  F LAWFHA+IQER  Y P GW+K YEF +SD
Sbjct: 4152 GVKANMLRTFSSIPVSRICKSPNERARLYFLLAWFHAIIQERLRYAPLGWSKKYEFGESD 4211

Query: 61   LNAALNILNARLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113
            L +A + ++  L     G        + W  +  L+  +IYGGR+DN  D ++L+++L+ 
Sbjct: 4212 LRSACDTVDTWLDDTAKGRQNISPDKIPWSALKTLMAQSIYGGRVDNEFDQRLLNTFLER 4271

Query: 114  YFSS 117
             F++
Sbjct: 4272 LFTT 4275

Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein has ATPase activity; the force-producing power stroke is thought to occur on release of ADP.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
196001173	4324	hypothetical protein TRIADDRAFT_22099 [T	0.971	0.031	0.514	3e-34
118378437	4286	Dynein heavy chain family protein [Tetra	0.971	0.031	0.496	8e-34
54660021	4236	cytoplasmic dynein heavy chain 2 protein	0.971	0.032	0.496	9e-34
449692566	504	PREDICTED: cytoplasmic dynein 2 heavy ch	0.971	0.269	0.492	2e-33
291383985	4306	PREDICTED: dynein, cytoplasmic 2, heavy	0.821	0.026	0.558	2e-33
291383983	4313	PREDICTED: dynein, cytoplasmic 2, heavy	0.821	0.026	0.558	2e-33
149633267	4391	PREDICTED: cytoplasmic dynein 2 heavy ch	0.964	0.030	0.489	3e-33
156378247	4294	predicted protein [Nematostella vectensi	0.871	0.028	0.544	3e-33
403262919	4307	PREDICTED: cytoplasmic dynein 2 heavy ch	0.821	0.026	0.558	4e-33
403262921	4314	PREDICTED: cytoplasmic dynein 2 heavy ch	0.821	0.026	0.558	4e-33

>gi|196001173|ref|XP_002110454.1| hypothetical protein TRIADDRAFT_22099 [Trichoplax adhaerens] gi|190586405|gb|EDV26458.1| hypothetical protein TRIADDRAFT_22099 [Trichoplax adhaerens]

 Score =  149 bits (377), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/142 (51%), Positives = 95/142 (66%), Gaps = 6/142 (4%)

Query: 3    GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            G+KRNLQRT  SWS     K NS  + +ALFT AWFHA++QERR+YIPQGW+KFYEF+ S
Sbjct: 3850 GVKRNLQRTLESWSTDFFQKSNSPIRAQALFTAAWFHAIVQERRSYIPQGWSKFYEFSRS 3909

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL  A  ++   L + G   VKW+++HGLL NA+YGGRIDN  D++VL SYL   F+ +V
Sbjct: 3910 DLRCAAEVIERVLKKSGNDSVKWEFVHGLLENAVYGGRIDNPFDIRVLESYLHQCFNKSV 3969

Query: 120  AKTAS---TPLAPGVVLPSSTN 138
                S    PL     +P S++
Sbjct: 3970 IGGQSGRRKPLTNNFSMPQSSH 3991

Source: Trichoplax adhaerens

Species: Trichoplax adhaerens

Genus: Trichoplax

Phylum: Placozoa

Superkingdom: Eukaryota

>gi|118378437|ref|XP_001022394.1| Dynein heavy chain family protein [Tetrahymena thermophila] gi|89304161|gb|EAS02149.1| Dynein heavy chain family protein [Tetrahymena thermophila SB210]

 Score =  148 bits (373), Expect = 8e-34,   Method: Composition-based stats.
 Identities = 69/139 (49%), Positives = 94/139 (67%), Gaps = 3/139 (2%)

Query: 3    GIKRNLQRTYASWSQTKL--NSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
            G+K+N++R Y+SWS   +   S  + + LF LAWFHA++QERRTYIPQGW+KFYEF+  D
Sbjct: 3817 GLKKNVERIYSSWSPQYIAKGSAQRAQLLFLLAWFHAILQERRTYIPQGWSKFYEFSYGD 3876

Query: 61   LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVA 120
            L A   I+   +      G+ W+ ++GL  NAIYGGRID A DM+VL SY++ YF++N+ 
Sbjct: 3877 LRAGTQIIEGLVQDTQQKGISWETLYGLFENAIYGGRIDEAFDMRVLRSYIELYFNNNIL 3936

Query: 121  KTASTPLAPGVVLPSSTNL 139
            K  S  +  G  LP STNL
Sbjct: 3937 K-GSARIPTGDTLPQSTNL 3954

Source: Tetrahymena thermophila

Species: Tetrahymena thermophila

Genus: Tetrahymena

Family: Tetrahymenidae

Order: Hymenostomatida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|54660021|gb|AAV37189.1| cytoplasmic dynein heavy chain 2 protein [Tetrahymena thermophila]

 Score =  148 bits (373), Expect = 9e-34,   Method: Composition-based stats.
 Identities = 69/139 (49%), Positives = 94/139 (67%), Gaps = 3/139 (2%)

Query: 3    GIKRNLQRTYASWSQTKL--NSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
            G+K+N++R Y+SWS   +   S  + + LF LAWFHA++QERRTYIPQGW+KFYEF+  D
Sbjct: 3767 GLKKNVERIYSSWSPQYIAKGSAQRAQLLFLLAWFHAILQERRTYIPQGWSKFYEFSYGD 3826

Query: 61   LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVA 120
            L A   I+   +      G+ W+ ++GL  NAIYGGRID A DM+VL SY++ YF++N+ 
Sbjct: 3827 LRAGTQIIEGLVQDTQQKGISWETLYGLFENAIYGGRIDEAFDMRVLRSYIELYFNNNIL 3886

Query: 121  KTASTPLAPGVVLPSSTNL 139
            K  S  +  G  LP STNL
Sbjct: 3887 K-GSARIPTGDTLPQSTNL 3904

Source: Tetrahymena thermophila

Species: Tetrahymena thermophila

Genus: Tetrahymena

Family: Tetrahymenidae

Order: Hymenostomatida

Class: Oligohymenophorea

Superkingdom: Eukaryota

>gi|449692566|ref|XP_004213086.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1-like, partial [Hydra magnipapillata]

 Score =  147 bits (370), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 69/140 (49%), Positives = 96/140 (68%), Gaps = 4/140 (2%)

Query: 3   GIKRNLQRTYASWSQTKLN-STDQGRA--LFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
           GIK+N+QR++ SW+      ST+  R   LF LAWFHAL++ERR +IPQGW KFYEF+ +
Sbjct: 83  GIKKNMQRSFESWTPNFFQQSTNNSRCYTLFALAWFHALVEERRNFIPQGWTKFYEFSMA 142

Query: 60  DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
           DL A  +I++    + G   + WD++HGL  NAIYGGR+DN  D++VLSSYL  YFS  +
Sbjct: 143 DLRAGADIVDRLFKKAGNKSISWDFLHGLFENAIYGGRVDNNFDVRVLSSYLHMYFSDKL 202

Query: 120 AKTASTPLAPG-VVLPSSTN 138
             +++  L P  V LP++TN
Sbjct: 203 TSSSNKTLFPASVSLPATTN 222

Source: Hydra magnipapillata

Species: Hydra magnipapillata

Genus: Hydra

Family: Hydridae

Order: Hydroida

Class: Hydrozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|291383985|ref|XP_002708585.1| PREDICTED: dynein, cytoplasmic 2, heavy chain 1 isoform 2 [Oryctolagus cuniculus]

 Score =  147 bits (370), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/120 (55%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            G+K+NL RTY SW+  ++N  D   +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3834 GLKKNLMRTYESWTPEQINKKDNILRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 3893

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3894 DLRAGYNIIDRLF--DGTKDVQWEFVHGLLENAIYGGRIDNCFDLRVLQSYLKQFFNSSV 3951

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|291383983|ref|XP_002708584.1| PREDICTED: dynein, cytoplasmic 2, heavy chain 1 isoform 1 [Oryctolagus cuniculus]

 Score =  146 bits (369), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 67/120 (55%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            G+K+NL RTY SW+  ++N  D   +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3841 GLKKNLMRTYESWTPEQINKKDNILRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 3900

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3901 DLRAGYNIIDRLF--DGTKDVQWEFVHGLLENAIYGGRIDNCFDLRVLQSYLKQFFNSSV 3958

Source: Oryctolagus cuniculus

Species: Oryctolagus cuniculus

Genus: Oryctolagus

Family: Leporidae

Order: Lagomorpha

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|149633267|ref|XP_001509757.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1-like [Ornithorhynchus anatinus]

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 71/145 (48%), Positives = 96/145 (66%), Gaps = 10/145 (6%)

Query: 3    GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            G+K+NL RTY SW+  ++N  D   +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3920 GLKKNLMRTYESWTPEQINKKDVLSRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3979

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A  NI++     DG    +W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3980 DLRAGYNIIDRLF--DGTKDFQWEFVHGLLENAIYGGRIDNYFDLRVLRSYLEQFFNSSV 4037

Query: 120  AKTA-----STPLAPGVVLPSSTNL 139
               +      +     + LP+S N+
Sbjct: 4038 ISGSHHGRKKSGFPNSISLPNSCNI 4062

Source: Ornithorhynchus anatinus

Species: Ornithorhynchus anatinus

Genus: Ornithorhynchus

Family: Ornithorhynchidae

Order: Monotremata

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156378247|ref|XP_001631055.1| predicted protein [Nematostella vectensis] gi|156218088|gb|EDO38992.1| predicted protein [Nematostella vectensis]

 Score =  146 bits (369), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 68/125 (54%), Positives = 84/125 (67%), Gaps = 3/125 (2%)

Query: 3    GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            GIK+N+ RTY SWS     + N++ + +ALF L+WFHA++QERR YIPQGW KFYEF+  
Sbjct: 3854 GIKKNMLRTYDSWSPEFVQRGNNSTRAQALFVLSWFHAIMQERRNYIPQGWTKFYEFSFG 3913

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A   I++   S  G G V+W ++HGL  NAIYGGRIDN  DMKVL SYL  YF   V
Sbjct: 3914 DLRAGAEIIDRLCSDSGSGSVRWQFVHGLFANAIYGGRIDNTFDMKVLESYLLQYFEQAV 3973

Query: 120  AKTAS 124
                S
Sbjct: 3974 FAQGS 3978

Source: Nematostella vectensis

Species: Nematostella vectensis

Genus: Nematostella

Family: Edwardsiidae

Order: Actiniaria

Class: Anthozoa

Phylum: Cnidaria

Superkingdom: Eukaryota

>gi|403262919|ref|XP_003923812.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1 isoform 1 [Saimiri boliviensis boliviensis]

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/120 (55%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            G+K+NL RTY SW+  ++N  D   +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3835 GLKKNLMRTYESWTPEQINKKDNILRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 3894

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3895 DLRAGYNIIDRLF--DGTKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 3952

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|403262921|ref|XP_003923813.1| PREDICTED: cytoplasmic dynein 2 heavy chain 1 isoform 2 [Saimiri boliviensis boliviensis]

 Score =  145 bits (367), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 67/120 (55%), Positives = 87/120 (72%), Gaps = 5/120 (4%)

Query: 3    GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
            G+K+NL RTY SW+  ++N  D   +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct: 3842 GLKKNLMRTYESWTPEQINKKDNILRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 3901

Query: 60   DLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
            DL A  NI++     DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct: 3902 DLRAGYNIIDRLF--DGTKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 3959

Source: Saimiri boliviensis boliviensis

Species: Saimiri boliviensis

Genus: Saimiri

Family: Cebidae

Order: Primates

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
UNIPROTKB|H0YDE0	378	DYNC2H1 "Cytoplasmic dynein 2	0.821	0.304	0.55	4.9e-30
UNIPROTKB|G3MYP7	506	G3MYP7 "Uncharacterized protei	0.857	0.237	0.512	5.2e-29
UNIPROTKB|F1SV51	589	DYNC2H1 "Uncharacterized prote	0.821	0.195	0.533	1.5e-28
UNIPROTKB|Q8NCM8	4307	DYNC2H1 "Cytoplasmic dynein 2	0.821	0.026	0.55	5.6e-28
MGI|MGI:107736	4306	Dync2h1 "dynein cytoplasmic 2	0.821	0.026	0.516	3.1e-27
UNIPROTKB|E2RDH6	4313	DYNC2H1 "Uncharacterized prote	0.821	0.026	0.525	4e-27
RGD|71042	4306	Dync2h1 "dynein cytoplasmic 2	0.821	0.026	0.516	6.5e-27
UNIPROTKB|Q9JJ79	4306	Dync2h1 "Cytoplasmic dynein 2	0.821	0.026	0.516	6.5e-27
UNIPROTKB|E1C9F0	4303	DYNC2H1 "Uncharacterized prote	0.821	0.026	0.525	4.6e-26
UNIPROTKB|Q9SMH5	4334	DHC1B "Cytoplasmic dynein 2 he	0.942	0.030	0.475	7e-23

UNIPROTKB|H0YDE0 DYNC2H1 "Cytoplasmic dynein 2 heavy chain 1" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 66/120 (55%), Positives = 85/120 (70%)

Query:     3 GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K+NL RTY SW+    +K ++T +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct:   228 GLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 287

Query:    60 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct:   288 DLRAGYNIID-RLF-DGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 345

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

UNIPROTKB|G3MYP7 G3MYP7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 325 (119.5 bits), Expect = 5.2e-29, P = 5.2e-29
 Identities = 64/125 (51%), Positives = 84/125 (67%)

Query:     3 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K+NL RTY SW+  +++  D   +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct:    83 GLKKNLMRTYESWTPEQISKKDNVHRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 142

Query:    60 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S++
Sbjct:   143 DLRAGYNIID-RLF-DGSKDVQWEFVHGLLENAIYGGRIDNYFDLRVLRSYLKQFFNSSI 200

Query:   120 AKTAS 124
                 S
Sbjct:   201 IDVLS 205

GO:0030286 "dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|F1SV51 DYNC2H1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 324 (119.1 bits), Expect = 1.5e-28, P = 1.5e-28
 Identities = 64/120 (53%), Positives = 83/120 (69%)

Query:     3 GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K+NL RTY SW+    +K N+  +  ALF+ AWFHA  QERR YIPQGW KFYEF+ S
Sbjct:   236 GLKKNLLRTYESWTPEQISKKNNIHRAHALFSFAWFHAACQERRNYIPQGWTKFYEFSLS 295

Query:    60 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S++
Sbjct:   296 DLRAGYNIID-RLF-DGTKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSI 353

GO:0030286 "dynein complex" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

UNIPROTKB|Q8NCM8 DYNC2H1 "Cytoplasmic dynein 2 heavy chain 1" [Homo sapiens (taxid:9606)]

 Score = 332 (121.9 bits), Expect = 5.6e-28, P = 5.6e-28
 Identities = 66/120 (55%), Positives = 85/120 (70%)

Query:     3 GIKRNLQRTYASWSQ---TKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K+NL RTY SW+    +K ++T +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct:  3835 GLKKNLMRTYESWTPEQISKKDNTHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3894

Query:    60 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S+V
Sbjct:  3895 DLRAGYNIID-RLF-DGAKDVQWEFVHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSV 3952

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0007030 "Golgi organization" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0003774 "motor activity" evidence=NAS

GO:0005874 "microtubule" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

MGI|MGI:107736 Dync2h1 "dynein cytoplasmic 2 heavy chain 1" [Mus musculus (taxid:10090)]

 Score = 325 (119.5 bits), Expect = 3.1e-27, P = 3.1e-27
 Identities = 62/120 (51%), Positives = 84/120 (70%)

Query:     3 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR YIPQGW KFYEF+ S
Sbjct:  3834 GLKKNLMRTYESWTPEQISKRDNIHRAHALFSLAWFHAACQERRNYIPQGWTKFYEFSLS 3893

Query:    60 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
             D          RL  DG   V+W+++HGLL N+IYGGR+DN  D++VL SYL+ +F+S++
Sbjct:  3894 DLRAGYHVID-RLF-DGTKDVQWEFVHGLLENSIYGGRVDNYFDLRVLQSYLKQFFNSSI 3951

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003774 "motor activity" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0005929 "cilium" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007030 "Golgi organization" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IMP

GO:0008105 "asymmetric protein localization" evidence=IMP

GO:0009953 "dorsal/ventral pattern formation" evidence=IGI;IMP

GO:0016020 "membrane" evidence=IEA

GO:0016485 "protein processing" evidence=IMP

GO:0016887 "ATPase activity" evidence=IEA

GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA

GO:0021522 "spinal cord motor neuron differentiation" evidence=IGI

GO:0030030 "cell projection organization" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030182 "neuron differentiation" evidence=IMP

GO:0030286 "dynein complex" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IMP

GO:0030900 "forebrain development" evidence=IMP

GO:0031512 "motile primary cilium" evidence=IDA

GO:0035085 "cilium axoneme" evidence=IDA

GO:0042384 "cilium assembly" evidence=IMP

GO:0042995 "cell projection" evidence=IEA

GO:0045177 "apical part of cell" evidence=IDA

GO:0060271 "cilium morphogenesis" evidence=IMP

UNIPROTKB|E2RDH6 DYNC2H1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 324 (119.1 bits), Expect = 4.0e-27, P = 4.0e-27
 Identities = 63/120 (52%), Positives = 82/120 (68%)

Query:     3 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K+NL RTY SW+  +++  D   +  ALF  AWFHA  QERR YIPQGW KFYEF+ S
Sbjct:  3841 GLKKNLMRTYESWTPEQISKKDNVHRAHALFNFAWFHAACQERRNYIPQGWTKFYEFSLS 3900

Query:    60 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
             D          RL  DG   V+W+++HGLL NAIYGGRIDN  D++VL SYL+ +F+S++
Sbjct:  3901 DLRAGYSIID-RLF-DGTKDVQWEFLHGLLENAIYGGRIDNYFDLRVLQSYLKQFFNSSI 3958

GO:0005524 "ATP binding" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0001539 "ciliary or flagellar motility" evidence=IEA

RGD|71042 Dync2h1 "dynein cytoplasmic 2 heavy chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 6.5e-27, P = 6.5e-27
 Identities = 62/120 (51%), Positives = 84/120 (70%)

Query:     3 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR +IPQGW KFYEF+ S
Sbjct:  3834 GLKKNLMRTYESWTPEQISKKDNIHRAHALFSLAWFHAACQERRNFIPQGWTKFYEFSLS 3893

Query:    60 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
             D          RL  DG   V+W+++HGLL N+IYGGRIDN  D++VL SYL+ +F+S++
Sbjct:  3894 DLRAGYHVID-RLF-DGSKDVQWEFVHGLLENSIYGGRIDNYFDLRVLQSYLKQFFNSSI 3951

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005874 "microtubule" evidence=IEA;ISO

GO:0005886 "plasma membrane" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0007030 "Golgi organization" evidence=ISO

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=ISO

GO:0008105 "asymmetric protein localization" evidence=ISO

GO:0009953 "dorsal/ventral pattern formation" evidence=ISO

GO:0016485 "protein processing" evidence=ISO

GO:0016887 "ATPase activity" evidence=IEA

GO:0021522 "spinal cord motor neuron differentiation" evidence=ISO

GO:0030031 "cell projection assembly" evidence=IEA

GO:0030182 "neuron differentiation" evidence=ISO

GO:0030286 "dynein complex" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=ISO

GO:0030900 "forebrain development" evidence=ISO

GO:0031512 "motile primary cilium" evidence=ISO

GO:0035085 "cilium axoneme" evidence=IEA;ISO

GO:0042384 "cilium assembly" evidence=ISO

GO:0045177 "apical part of cell" evidence=ISO

GO:0060271 "cilium morphogenesis" evidence=ISO

UNIPROTKB|Q9JJ79 Dync2h1 "Cytoplasmic dynein 2 heavy chain 1" [Rattus norvegicus (taxid:10116)]

 Score = 322 (118.4 bits), Expect = 6.5e-27, P = 6.5e-27
 Identities = 62/120 (51%), Positives = 84/120 (70%)

Query:     3 GIKRNLQRTYASWSQTKLNSTD---QGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K+NL RTY SW+  +++  D   +  ALF+LAWFHA  QERR +IPQGW KFYEF+ S
Sbjct:  3834 GLKKNLMRTYESWTPEQISKKDNIHRAHALFSLAWFHAACQERRNFIPQGWTKFYEFSLS 3893

Query:    60 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
             D          RL  DG   V+W+++HGLL N+IYGGRIDN  D++VL SYL+ +F+S++
Sbjct:  3894 DLRAGYHVID-RLF-DGSKDVQWEFVHGLLENSIYGGRIDNYFDLRVLQSYLKQFFNSSI 3951

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0030031 "cell projection assembly" evidence=IEA

UNIPROTKB|E1C9F0 DYNC2H1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 4.6e-26, P = 4.6e-26
 Identities = 63/120 (52%), Positives = 81/120 (67%)

Query:     3 GIKRNLQRTYASWSQTKLN---STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K+NL RTY SW+  ++N   +  +  +LF LAWFHA+ QERR YIPQGW KFYEF+ S
Sbjct:  3830 GLKKNLLRTYESWTPEQINKKGNLSRAHSLFCLAWFHAVCQERRNYIPQGWTKFYEFSLS 3889

Query:    60 DXXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNV 119
             D          RL + G    +W+++HGL  NAIYGGRIDN  DMKVL SYL+  F+S+V
Sbjct:  3890 DLRAGFDIID-RLFE-GSKDFQWEFVHGLFENAIYGGRIDNYFDMKVLRSYLEQLFNSSV 3947

GO:0001539 "ciliary or flagellar motility" evidence=IEA

GO:0003777 "microtubule motor activity" evidence=IEA

GO:0007018 "microtubule-based movement" evidence=IEA

GO:0016887 "ATPase activity" evidence=IEA

GO:0030286 "dynein complex" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007030 "Golgi organization" evidence=IEA

GO:0007368 "determination of left/right symmetry" evidence=IEA

GO:0008105 "asymmetric protein localization" evidence=IEA

GO:0009953 "dorsal/ventral pattern formation" evidence=IEA

GO:0016485 "protein processing" evidence=IEA

GO:0030326 "embryonic limb morphogenesis" evidence=IEA

GO:0030900 "forebrain development" evidence=IEA

GO:0031512 "motile primary cilium" evidence=IEA

GO:0035085 "cilium axoneme" evidence=IEA

GO:0042384 "cilium assembly" evidence=IEA

GO:0045177 "apical part of cell" evidence=IEA

UNIPROTKB|Q9SMH5 DHC1B "Cytoplasmic dynein 2 heavy chain 1" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 284 (105.0 bits), Expect = 7.0e-23, P = 7.0e-23
 Identities = 68/143 (47%), Positives = 87/143 (60%)

Query:     3 GIKRNLQRTYASWSQTKLNSTDQGRA--LFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
             G+K+NLQRTY +WS   L S    RA  LF LAWFHA++QERRTYIPQGW KFYEF+ +D
Sbjct:  3848 GMKKNLQRTYEAWSAEYLASGPPIRAQLLFVLAWFHAVVQERRTYIPQGWTKFYEFSFAD 3907

Query:    61 XXXXXXXXXXRLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVA 120
                        L+       +W  + GLL +AIYGGR+DN  D +VL ++L+  FS+   
Sbjct:  3908 LRSGMDVIT--LATRAGTAPQWPLLLGLLDDAIYGGRLDNPFDSQVLLTFLRRLFSAETV 3965

Query:   121 KTAS---TPLAPG--VVLPSSTN 138
               A     PL PG  VV+P+ TN
Sbjct:  3966 GAAGGKVRPL-PGSKVVVPT-TN 3986

GO:0003774 "motor activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0005858 "axonemal dynein complex" evidence=IDA

GO:0009296 "flagellum assembly" evidence=IMP

GO:0030286 "dynein complex" evidence=IDA

GO:0031514 "motile cilium" evidence=IDA

GO:0035085 "cilium axoneme" evidence=IDA

GO:0072594 "establishment of protein localization to organelle" evidence=IMP

GO:0097014 "microtubule-based flagellar cytoplasm" evidence=IDA

GO:0005932 "microtubule basal body" evidence=IDA

GO:0030992 "intraflagellar transport particle B" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q45VK7	DYHC2_MOUSE	No assigned EC number	0.5166	0.8214	0.0267	yes	N/A
Q9JJ79	DYHC2_RAT	No assigned EC number	0.5166	0.8214	0.0267	yes	N/A
Q8NCM8	DYHC2_HUMAN	No assigned EC number	0.5666	0.8214	0.0267	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	140
pfam03028	706	pfam03028, Dynein_heavy, Dynein heavy chain and re	1e-33
COG5245	3164	COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]	4e-14

>gnl|CDD|217325 pfam03028, Dynein_heavy, Dynein heavy chain and region D6 of dynein motor

 Score =  123 bits (310), Expect = 1e-33
 Identities = 45/119 (37%), Positives = 70/119 (58%), Gaps = 4/119 (3%)

Query: 2   RGIKRNLQRTYASWSQTKLNSTDQGRA----LFTLAWFHALIQERRTYIPQGWAKFYEFN 57
            G+K NL R  +S++Q  L    +       LF L +FHA++QERR + P GW K YEFN
Sbjct: 233 TGLKANLLRALSSFTQETLEMCKKPAEFKRILFLLCFFHAVVQERRKFGPLGWNKSYEFN 292

Query: 58  DSDLNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFS 116
           + DL  +L++L+  L  +    V W+ +  L G  +YGGRI +  D ++L +YL+ +F+
Sbjct: 293 EGDLRISLDVLDNYLDANAPDKVPWEDLRYLFGEIMYGGRITDDWDRRLLRTYLEEFFT 351

This family represents the C-terminal region of dynein heavy chain. The chain also contains ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. Dynein is also involved in cilia and flagella movement. The dynein subunit consists of at least two heavy chains and a number of intermediate and light chains. The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four correspond to the ATP binding sites with P-loop signatures described previously, and two are modules in which the P loop has been lost in evolution. This C-terminal domain carries the D6 region of the dynein motor where the P-loop has been lost in evolution but the general structure of a potential ATP binding site appears to be retained. Length = 706

>gnl|CDD|227570 COG5245, DYN1, Dynein, heavy chain [Cytoskeleton]

 Score = 67.7 bits (165), Expect = 4e-14
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 4/108 (3%)

Query: 27   RALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGGVKWDYIH 86
               F L+W HA +    +  P+   +   F D D     ++L   L  + +   KW    
Sbjct: 3008 DDAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNILFLNHLNARKWGNNR 3067

Query: 87   GLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP 134
             L+   +YG +    +D KV+  Y + Y     A   S+ +   V   
Sbjct: 3068 DLIFTIVYGKKHSLMEDSKVVDKYCRGYG----AHETSSQILASVPGG 3111

Length = 3164

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF03028	707	Dynein_heavy: Dynein heavy chain and region D6 of	100.0
COG5245	3164	DYN1 Dynein, heavy chain [Cytoskeleton]	99.45

>PF03028 Dynein_heavy: Dynein heavy chain and region D6 of dynein motor; InterPro: IPR004273 Dynein is a multisubunit microtubule-dependent motor enzyme that acts as the force generating protein of eukaryotic cilia and flagella

Probab=100.00  E-value=4.5e-38  Score=277.31  Aligned_cols=136  Identities=44%  Similarity=0.784  Sum_probs=113.0

Q ss_pred             hhHHHHHHHHHhcCcccccC----chhhhhHHHHHHHHHHHHHHHHhhccCCCccccccChHhHHHHHHHHHHHHhhcCC
Q psy12537          2 RGIKRNLQRTYASWSQTKLN----STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGM   77 (140)
Q Consensus         2 ~Glk~nl~~~~~~~~~~~~~----~~~~~~l~f~L~~fHavl~eR~~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~~~   77 (140)
                      +|+|+||.++|..+.++.++    +.++++++|+||||||||+||++|||+|||++||||++||.+|++++..+++....
T Consensus       233 ~gik~~l~~~~~~~~~~~~~~~~~~~~~~~l~f~L~~fHavl~eR~~y~p~Gw~~~Y~f~~sDl~~a~~~l~~~~~~~~~  312 (707)
T PF03028_consen  233 PGIKANLLRTYNSISQDFFEMCSKPPEWRRLLFLLAWFHAVLQERRRYGPLGWNKPYEFNDSDLRAALDILDNWLDESSP  312 (707)
T ss_dssp             SSHHHHHHHHHCC--SCCHHHTSSSCHHHHHHHHHHHHHHHHHHHHHCTTTTSSS-----HHHHHHHHHHHHHHHHHCSC
T ss_pred             hHHHHHHHHHHHhhhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHhcCCcccceeeeechHHHHHHHHHHHHHHhhccc
Confidence            69999999999998877764    56899999999999999999999999999999999999999999999999986556


Q ss_pred             CCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhhCCCCCCCCC---CccCCCCCC
Q psy12537         78 GGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAP---GVVLPSSTN  138 (140)
Q Consensus        78 ~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~~~~~~~~~~~~---~~~~P~~~~  138 (140)
                      +.+||++|+|++++++|||||||++|+|+|.+|++++|++++++++.. +.+   ++.+|...+
T Consensus       313 ~~ipw~~l~~l~~~i~YGGrv~d~~D~r~l~~~~~~~f~~~~~~~~~~-l~~~~~~~~~P~~~~  375 (707)
T PF03028_consen  313 ESIPWDALRYLIGEIVYGGRVDDEWDRRLLNTLLNQFFNPEIFDPDFQ-LSPDSGSYSIPDSNS  375 (707)
T ss_dssp             CCTTHHHHHHHHHHTTTTTT-SSHHHHHHHHHHHHHHSSGGGGSTT-E-EET-TTTEE----SS
T ss_pred             cCCcHHHHHHHhhhceecCeeccHHHHHHHHHHHHHHcCchhhcchhh-cccCCCCccCCcccc
Confidence            899999999999999999999999999999999999999999998653 555   677786544

The cytoplasmic isoform of dynein acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules. Dynein is composed of a number of ATP-binding large subunits, intermediate size subunits and small subunits (see IPR001372 from INTERPRO). This family represents the C-terminal region of dynein heavy chain. The dynein heavy chain also exhibits ATPase activity and microtubule binding ability and acts as a motor for the movement of organelles and vesicles along microtubules. ; GO: 0003777 microtubule motor activity, 0007018 microtubule-based movement, 0030286 dynein complex; PDB: 3VKG_A 3VKH_C 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.

>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]

Probab=99.45  E-value=2e-13  Score=126.82  Aligned_cols=116  Identities=18%  Similarity=0.235  Sum_probs=96.7

Q ss_pred             hhHHHHHHHHHhcCcccccC-c-hhhhhHHHHHHHHHHHHHHHHhhccCCCccccccChHhHHHHHHHHHHHHhhcCCCC
Q psy12537          2 RGIKRNLQRTYASWSQTKLN-S-TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGMGG   79 (140)
Q Consensus         2 ~Glk~nl~~~~~~~~~~~~~-~-~~~~~l~f~L~~fHavl~eR~~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~~~~~   79 (140)
                      ||++.++.+.... ....++ . ...-+..|.|+|+||.+.+|-.++|-|||++|-|+++|++.+..++++.+-....+.
T Consensus      2982 p~~~~~~~dL~e~-~~~~~~~t~v~~~~~~f~Lsw~ha~va~v~~~~p~~~~e~~Yf~D~df~f~T~~L~NIl~~nhln~ 3060 (3164)
T COG5245        2982 PETGCGYADLVEI-DRYPFDYTLVIACDDAFYLSWEHAAVASVISAGPKENNEEIYFGDKDFEFKTHLLKNILFLNHLNA 3060 (3164)
T ss_pred             CcccccHHHHHhc-CcccccceeeeeehhHHHHHHHHHHHHHHhhcccccCCCceeeCcchHHHHHHHHHHHHhcccccc
Confidence            5566666666532 222333 2 233478999999999999999999999999999999999999999998765335578


Q ss_pred             CchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChh
Q psy12537         80 VKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSN  118 (140)
Q Consensus        80 i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~  118 (140)
                      +||...|.++.+|+||||++-..|.++++.||..++..+
T Consensus      3061 ~~wg~~rDlI~tIvyG~K~s~~~D~~vvdK~c~~~~a~~ 3099 (3164)
T COG5245        3061 RKWGNNRDLIFTIVYGKKHSLMEDSKVVDKYCRGYGAHE 3099 (3164)
T ss_pred             ccccchhhheeEeeecCccchhhhHHHHHHHHHHhccCc
Confidence            999999999999999999999999999999999999655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
3vkh_A	3367	X-Ray Structure Of A Functional Full-Length Dynein		4e-21
3vkg_A	3245	X-Ray Structure Of An Mtbd Truncation Mutant Of Dyn		5e-21
3qmz_A	2486	Crystal Structure Of The Cytoplasmic Dynein Heavy C		8e-12
4ai6_A	2695	Dynein Motor Domain - Adp Complex Length = 2695		9e-12

>pdb|3VKH|A Chain A, X-Ray Structure Of A Functional Full-Length Dynein Motor Domain Length = 3367

Iteration: 1
 Score = 96.7 bits (239), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 3    GIKRNLQRTYASWSQTKLNS--TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
            G+K NL  T+     T+++    ++ R  F LAWFHA+IQER  YIP GW KF+EFND+D
Sbjct: 2880 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2939
Query: 61   XXXXXXXXXXRLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113
                       +     G        + W  +  +LG+ IYGGRIDN  DM++L S+L+ 
Sbjct: 2940 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2999
Query: 114  YFSSNVAKTASTPLAP--GVVLPSST 137
             F+ + A     PL P  G+ +P  T
Sbjct: 3000 LFTPS-AFNPDFPLVPSIGLSVPEGT 3024

>pdb|3VKG|A Chain A, X-Ray Structure Of An Mtbd Truncation Mutant Of Dynein Motor Domain Length = 3245

Iteration: 1
 Score = 96.3 bits (238), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 55/146 (37%), Positives = 78/146 (53%), Gaps = 12/146 (8%)
Query: 3    GIKRNLQRTYASWSQTKLNS--TDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
            G+K NL  T+     T+++    ++ R  F LAWFHA+IQER  YIP GW KF+EFND+D
Sbjct: 2758 GVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDAD 2817
Query: 61   XXXXXXXXXXRLSQDGMG-------GVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQF 113
                       +     G        + W  +  +LG+ IYGGRIDN  DM++L S+L+ 
Sbjct: 2818 LRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQ 2877
Query: 114  YFSSNVAKTASTPLAP--GVVLPSST 137
             F+ + A     PL P  G+ +P  T
Sbjct: 2878 LFTPS-AFNPDFPLVPSIGLSVPEGT 2902

>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain Motor Domain Length = 2486

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 30   FTLAWFHALIQERRTYIPQGWAKFYEFNDSDXXXXXXXXXXRLSQDGMGGVKWDYIHGLL 89
            F L+WFHALI  R   +P G++K Y FND D           L+ +    + W  +   +
Sbjct: 2324 FLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHI 2383
Query: 90   GNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP 134
               +YGG+ID  +D++V++      F      + +  + PGV +P
Sbjct: 2384 ATIVYGGKIDEEKDLEVVAKLCAHVFCG----SDNLQIVPGVRIP 2424

>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex Length = 2695

Iteration: 1
 Score = 65.5 bits (158), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/105 (29%), Positives = 51/105 (48%), Gaps = 4/105 (3%)
Query: 30   FTLAWFHALIQERRTYIPQGWAKFYEFNDSDXXXXXXXXXXRLSQDGMGGVKWDYIHGLL 89
            F L+WFHALI  R   +P G++K Y FND D           L+ +    + W  +   +
Sbjct: 2533 FLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNSTNNIPWAQVRDHI 2592
Query: 90   GNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLP 134
               +YGG+ID  +D++V++      F      + +  + PGV +P
Sbjct: 2593 ATIVYGGKIDEEKDLEVVAKLCAHVFCG----SDNLQIVPGVRIP 2633

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	2e-40
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	4e-39

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A Length = 2695

 Score =  142 bits (360), Expect = 2e-40
 Identities = 37/136 (27%), Positives = 62/136 (45%), Gaps = 5/136 (3%)

Query: 2    RGIKRNLQRTYASWS-QTKLNSTDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSD 60
             GI   ++  + S     K++        F L+WFHALI  R   +P G++K Y FND D
Sbjct: 2504 PGILDTVKDLWGSQFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCD 2563

Query: 61   LNAALNILNARLSQDGMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVA 120
               A   L   L+ +    + W  +   +   +YGG+ID  +D++V++      F  +  
Sbjct: 2564 FQFASVYLENVLATNSTNNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCGS-- 2621

Query: 121  KTASTPLAPGVVLPSS 136
               +  + PGV +P  
Sbjct: 2622 --DNLQIVPGVRIPQP 2635

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245

 Score =  138 bits (349), Expect = 4e-39
 Identities = 56/149 (37%), Positives = 80/149 (53%), Gaps = 12/149 (8%)

Query: 2    RGIKRNLQRTYASWSQTKLNSTDQ--GRALFTLAWFHALIQERRTYIPQGWAKFYEFNDS 59
             G+K NL  T+     T+++       R  F LAWFHA+IQER  YIP GW KF+EFND+
Sbjct: 2757 PGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDA 2816

Query: 60   DLNAALNILNARLSQDGMGG-------VKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQ 112
            DL  AL+ ++  +     G        + W  +  +LG+ IYGGRIDN  DM++L S+L+
Sbjct: 2817 DLRGALDSIDYWVDLYSKGRSNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLE 2876

Query: 113  FYFSSNVAKTASTPLAPGV--VLPSSTNL 139
              F+ +       PL P +   +P  T  
Sbjct: 2877 QLFTPSAFNP-DFPLVPSIGLSVPEGTTR 2904

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
3vkg_A	3245	Dynein heavy chain, cytoplasmic; AAA+ protein, mol	100.0
4akg_A	2695	Glutathione S-transferase class-MU 26 kDa isozyme	100.0

>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*

Probab=100.00  E-value=7.7e-39  Score=310.44  Aligned_cols=137  Identities=40%  Similarity=0.770  Sum_probs=123.4

Q ss_pred             hhHHHHHHHHHhcCcccccC--chhhhhHHHHHHHHHHHHHHHHhhccCCCccccccChHhHHHHHHHHHHHHhhc----
Q psy12537          2 RGIKRNLQRTYASWSQTKLN--STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQD----   75 (140)
Q Consensus         2 ~Glk~nl~~~~~~~~~~~~~--~~~~~~l~f~L~~fHavl~eR~~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~----   75 (140)
                      +|||+||+|+|.+++++.++  +.+|++++|+|||||||++||++|||+|||++||||++||++|+++|+.+++..    
T Consensus      2757 ~GlkaNl~rs~~~~~~~~~~~~~~~~~~llf~L~fFHAvvqERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~~~ 2836 (3245)
T 3vkg_A         2757 PGVKANLLHTFIGIPATRMDKQPAERSRIYFLLAWFHAIIQERLRYIPLGWTKFFEFNDADLRGALDSIDYWVDLYSKGR 2836 (3245)
T ss_dssp             SSHHHHHHHHHTTSCHHHHTSSSTHHHHHHHHHHHHHHHHHHGGGGTTTSCSSCCCCCHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             hhHHHHHHHHHHhCCHHHhccCcHHHHHHHHHHHHHHHHHHHHHHhCccccCcccccchHHHHHHHHHHHHHHHHhcccc
Confidence            69999999999998888776  678889999999999999999999999999999999999999999999999752    


Q ss_pred             ---CCCCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhhCCCCCCCCC--CccCCCCCCC
Q psy12537         76 ---GMGGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAP--GVVLPSSTNL  139 (140)
Q Consensus        76 ---~~~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~~~~~~~~~~~~--~~~~P~~~~~  139 (140)
                         .++.|||++|+||+|+|+|||||||+||||+|.+|+++||+++++++++. +.|  .|.+|.++++
T Consensus      2837 ~n~~~~~iPw~~L~yl~gei~YGGrVtDd~DrrlL~t~l~~~~~~~~~~~~~~-~~~~~~~~~P~~~~~ 2904 (3245)
T 3vkg_A         2837 SNIDPDKIPWIAVRTILGSTIYGGRIDNEFDMRLLYSFLEQLFTPSAFNPDFP-LVPSIGLSVPEGTTR 2904 (3245)
T ss_dssp             SCCCTTTSCHHHHHHCCCCCCCSTTCCSSSHHHHHHHHHHHHSSGGGGSSSCE-EEGGGTEECCCCSSH
T ss_pred             cccCCCCCCHHHHHHHHhhcccCCccCCHHHHHHHHHHHHHHcCHhhcCCccc-CCCCCCCCCCCCCCH
Confidence               13679999999999999999999999999999999999999999997753 655  3678876653

>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A

Probab=100.00  E-value=3e-37  Score=297.54  Aligned_cols=127  Identities=28%  Similarity=0.576  Sum_probs=112.6

Q ss_pred             hhHHHHHHHHHhcCcccccC----chhhhhHHHHHHHHHHHHHHHHhhccCCCccccccChHhHHHHHHHHHHHHhhcCC
Q psy12537          2 RGIKRNLQRTYASWSQTKLN----STDQGRALFTLAWFHALIQERRTYIPQGWAKFYEFNDSDLNAALNILNARLSQDGM   77 (140)
Q Consensus         2 ~Glk~nl~~~~~~~~~~~~~----~~~~~~l~f~L~~fHavl~eR~~y~~~Gw~~~Y~F~~sDl~~~~~~l~~~~~~~~~   77 (140)
                      +|+|+||+|+|..   +.++    +.+|++++|+|||||||++||++|||+|||++||||++||++|+++++.+++...+
T Consensus      2504 ~Glkanl~r~~~~---~~~~~~~~~~~~~~llf~L~~fHavv~ERrkfgplGWn~~YeFn~sDl~~s~~~l~~~l~~~~~ 2580 (2695)
T 4akg_A         2504 PGILDTVKDLWGS---QFFTGKISGVWSVYCTFLLSWFHALITARTRLVPHGFSKKYYFNDCDFQFASVYLENVLATNST 2580 (2695)
T ss_dssp             CCHHHHHHHHHHH---GGGGCCSSCHHHHHHHHHHHHHHHHHHHHHHSTTTTSSSCCCCCHHHHHHHHHHHHHHHHHSCS
T ss_pred             hhHHHHHHHHhhh---HHHhhccccHHHHHHHHHHHHHHHHHHHHHHhCccccCcCCCCCHhHHHHHHHHHHHHHHhcCC
Confidence            6999999999943   3332    67899999999999999999999999999999999999999999999999985334


Q ss_pred             CCCchhhHHhhhhhhccccccCChHHHHHHHHHHHHhcChhhhCCCCCCCCCCccCCC
Q psy12537         78 GGVKWDYIHGLLGNAIYGGRIDNAQDMKVLSSYLQFYFSSNVAKTASTPLAPGVVLPS  135 (140)
Q Consensus        78 ~~i~w~~l~~li~~ivYGGrv~d~~D~r~L~~~~~~~~~~~~~~~~~~~~~~~~~~P~  135 (140)
                      +.|||++|+||+|+|+|||||||+||||+|.+|+++||++   +++ +.+.|++.+|.
T Consensus      2581 ~~ipw~~l~yl~ge~~YGGrvtd~~Drr~l~t~l~~~~~~---~~~-~~~~~~~~~~~ 2634 (2695)
T 4akg_A         2581 NNIPWAQVRDHIATIVYGGKIDEEKDLEVVAKLCAHVFCG---SDN-LQIVPGVRIPQ 2634 (2695)
T ss_dssp             CSGGGHHHHHHHHHTTSTTTCCSHHHHHHHHHHHHHHTCC---SSB-CCSSSSCCCBC
T ss_pred             CCCCHHHHHHHHHHhhcCCccCCHHHHHHHHHHHHHHcCC---CCC-cccCCCcCcCC
Confidence            7899999999999999999999999999999999999998   333 34777766653

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00