Psyllid ID: psy12551

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
CKCSSKSGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEEDKIP
Secondary Structure (PSIPRED)
ccccccccccEEEEEEEEcccccccccHHHHHHHcccccHHHHHHHHHHHccccccHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEEEEEEcccccccccEEEEcEEcccccHHHHHHHHHHHcccccHHHHHHHcccc
Coil and Loop (DISEMBL)
ckcssksgltyipvvlrqsqvnpsrlpvvvgglldvdcsEDIIKNLILVVRGQfstdelveedkip
Flexible Loop (DISEMBL)
ckcssksgltyipvvlrqsqvnpsrLPVVVGGLLDVDCSEDIIKNLILVVrgqfstdelveedkip
Low Complexity Region (SEG)
CKCSSKSGLTYIPVVLRQSQVNPSRLPvvvgglldvdCSEDIIKNLILVVRGQFSTDELVEEDKIP
Disordered region (IsUnstruct)
********LTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFS***********
Disordered Region (DISOPRED)
*********TYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVE*D***
Disordered Region (DISEMBL)
CKCSSKSGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTD*********
Disordered Region (DISPRO)
CKCSSKSGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEEDKI*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
CKCSSKSGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEEDKIP
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
P29742	1678	Clathrin heavy chain OS=D	yes	N/A	0.757	0.029	0.826	9e-18
P11442	1675	Clathrin heavy chain 1 OS	yes	N/A	0.757	0.029	0.788	4e-17
P49951	1675	Clathrin heavy chain 1 OS	yes	N/A	0.757	0.029	0.788	4e-17
Q68FD5	1675	Clathrin heavy chain 1 OS	yes	N/A	0.757	0.029	0.788	5e-17
Q00610	1675	Clathrin heavy chain 1 OS	yes	N/A	0.757	0.029	0.788	5e-17
P53675	1640	Clathrin heavy chain 2 OS	no	N/A	0.757	0.030	0.673	4e-14
P34574	1681	Probable clathrin heavy c	yes	N/A	0.757	0.029	0.634	2e-11
Q10161	1666	Probable clathrin heavy c	yes	N/A	0.651	0.025	0.558	6e-09
P25870	1694	Clathrin heavy chain OS=D	yes	N/A	0.651	0.025	0.511	6e-07
Q0WLB5	1703	Clathrin heavy chain 2 OS	yes	N/A	0.651	0.025	0.558	7e-06

>sp|P29742|CLH_DROME Clathrin heavy chain OS=Drosophila melanogaster GN=Chc PE=2 SV=1

 Score = 89.0 bits (219), Expect = 9e-18,   Method: Composition-based stats.
 Identities = 43/52 (82%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVV+GQFSTDELVEE
Sbjct: 800 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVKGQFSTDELVEE 849

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Drosophila melanogaster (taxid: 7227)

>sp|P11442|CLH1_RAT Clathrin heavy chain 1 OS=Rattus norvegicus GN=Cltc PE=1 SV=3

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 47/52 (90%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Rattus norvegicus (taxid: 10116)

>sp|P49951|CLH1_BOVIN Clathrin heavy chain 1 OS=Bos taurus GN=CLTC PE=1 SV=1

 Score = 86.7 bits (213), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 47/52 (90%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Bos taurus (taxid: 9913)

>sp|Q68FD5|CLH1_MOUSE Clathrin heavy chain 1 OS=Mus musculus GN=Cltc PE=1 SV=3

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 47/52 (90%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Mus musculus (taxid: 10090)

>sp|Q00610|CLH1_HUMAN Clathrin heavy chain 1 OS=Homo sapiens GN=CLTC PE=1 SV=5

 Score = 86.3 bits (212), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 41/52 (78%), Positives = 47/52 (90%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|P53675|CLH2_HUMAN Clathrin heavy chain 2 OS=Homo sapiens GN=CLTCL1 PE=1 SV=2

 Score = 76.6 bits (187), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 35/52 (67%), Positives = 44/52 (84%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSR P V+GGLLDVDCSE++IK+LI+ VRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRTPAVIGGLLDVDCSEEVIKHLIMAVRGQFSTDELVAE 848

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles. Two different adapter protein complexes link the clathrin lattice either to the plasma membrane or to the trans-Golgi network.

Homo sapiens (taxid: 9606)

>sp|P34574|CLH_CAEEL Probable clathrin heavy chain 1 OS=Caenorhabditis elegans GN=chc-1 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/52 (63%), Positives = 40/52 (76%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI V +++  VN +RLP+VVG LLDVDCSED IK LI+  RG+F  DELVEE
Sbjct: 801 YIEVFVQK--VNAARLPIVVGALLDVDCSEDAIKQLIINTRGKFDIDELVEE 850

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Caenorhabditis elegans (taxid: 6239)

>sp|Q10161|CLH_SCHPO Probable clathrin heavy chain OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=chc1 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 6e-09,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 34/43 (79%)

Query: 20  QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           ++NPS+ P VVG LLD+DC E++++NL++ V GQ   DELVEE
Sbjct: 803 RINPSKTPQVVGALLDIDCDEELVQNLLMSVVGQVPVDELVEE 845

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|P25870|CLH_DICDI Clathrin heavy chain OS=Dictyostelium discoideum GN=chcA PE=1 SV=1

 Score = 52.8 bits (125), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 22/43 (51%), Positives = 30/43 (69%)

Query: 20  QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           ++NP   P+VVG LLD+DC ED ++NLI+ VR     D LVE+
Sbjct: 807 KINPVNTPLVVGALLDLDCQEDYLRNLIMSVRNMCPADSLVEQ 849

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Dictyostelium discoideum (taxid: 44689)

>sp|Q0WLB5|CLAH2_ARATH Clathrin heavy chain 2 OS=Arabidopsis thaliana GN=CHC2 PE=1 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 24/43 (55%), Positives = 28/43 (65%)

Query: 20  QVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           +VNP   P+VVG LLD +C ED IK LIL VR     + LVEE
Sbjct: 820 KVNPGNAPLVVGQLLDDECPEDFIKGLILSVRSLLPVEPLVEE 862

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles (By similarity). Mediates endocytosis and is required for a correct polar distribution of PIN auxin transporters.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
332020169	1645	Clathrin heavy chain [Acromyrmex echinat	0.757	0.030	0.846	1e-16
307168135	1676	Clathrin heavy chain [Camponotus florida	0.757	0.029	0.846	1e-16
307200331	1678	Clathrin heavy chain [Harpegnathos salta	0.757	0.029	0.846	1e-16
328779022	1678	PREDICTED: clathrin heavy chain-like iso	0.757	0.029	0.846	1e-16
383861751	1678	PREDICTED: clathrin heavy chain-like [Me	0.757	0.029	0.846	1e-16
380013532	1635	PREDICTED: LOW QUALITY PROTEIN: clathrin	0.757	0.030	0.846	1e-16
350403105	1678	PREDICTED: clathrin heavy chain-like [Bo	0.757	0.029	0.846	1e-16
340728255	1678	PREDICTED: clathrin heavy chain-like [Bo	0.757	0.029	0.846	1e-16
322795651	1723	hypothetical protein SINV_03041 [Solenop	0.757	0.029	0.846	1e-16
156544986	1680	PREDICTED: clathrin heavy chain-like iso	0.757	0.029	0.826	2e-16

>gi|332020169|gb|EGI60613.1| Clathrin heavy chain [Acromyrmex echinatior]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 768 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 817

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307168135|gb|EFN61414.1| Clathrin heavy chain [Camponotus floridanus]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 799 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 848

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307200331|gb|EFN80585.1| Clathrin heavy chain [Harpegnathos saltator]

 Score = 90.5 bits (223), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 799 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 848

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779022|ref|XP_623111.3| PREDICTED: clathrin heavy chain-like isoform 1 [Apis mellifera]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 799 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 848

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861751|ref|XP_003706348.1| PREDICTED: clathrin heavy chain-like [Megachile rotundata]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 799 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 848

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380013532|ref|XP_003690808.1| PREDICTED: LOW QUALITY PROTEIN: clathrin heavy chain-like [Apis florea]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 799 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 848

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350403105|ref|XP_003486702.1| PREDICTED: clathrin heavy chain-like [Bombus impatiens]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 799 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 848

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340728255|ref|XP_003402443.1| PREDICTED: clathrin heavy chain-like [Bombus terrestris]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 799 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 848

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322795651|gb|EFZ18330.1| hypothetical protein SINV_03041 [Solenopsis invicta]

 Score = 90.1 bits (222), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 799 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 848

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156544986|ref|XP_001607995.1| PREDICTED: clathrin heavy chain-like isoform 1 [Nasonia vitripennis] gi|345481953|ref|XP_003424493.1| PREDICTED: clathrin heavy chain-like isoform 2 [Nasonia vitripennis]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 43/52 (82%), Positives = 48/52 (92%), Gaps = 2/52 (3%)

Query: 11  YIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLPVV+GGLLDVDCSEDIIKNLILVVRGQFSTDELVEE
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 848

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
UNIPROTKB|F1NK83	126	CLTC "Uncharacterized protein"	0.636	0.333	0.714	5.2e-10
FB|FBgn0000319	1678	Chc "Clathrin heavy chain" [Dr	0.757	0.029	0.634	3.3e-09
UNIPROTKB|K7GQL8	911	CLTC "Uncharacterized protein"	0.757	0.054	0.615	4.2e-09
UNIPROTKB|F6PV15	919	CLTC "Uncharacterized protein"	0.757	0.054	0.615	4.2e-09
UNIPROTKB|F1MPU0	1661	CLTC "Clathrin heavy chain 1"	0.757	0.030	0.615	8.6e-09
UNIPROTKB|F1NW23	1662	CLTC "Uncharacterized protein"	0.757	0.030	0.615	8.6e-09
UNIPROTKB|P49951	1675	CLTC "Clathrin heavy chain 1"	0.757	0.029	0.615	8.6e-09
UNIPROTKB|F1PHQ0	1675	CLTC "Uncharacterized protein"	0.757	0.029	0.615	8.6e-09
UNIPROTKB|Q00610	1675	CLTC "Clathrin heavy chain 1"	0.757	0.029	0.615	8.6e-09
MGI|MGI:2388633	1675	Cltc "clathrin, heavy polypept	0.757	0.029	0.615	8.6e-09

UNIPROTKB|F1NK83 CLTC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 30/42 (71%), Positives = 31/42 (73%)

Query:    21 VNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct:     1 VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 42

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0030117 "membrane coat" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0033572 "transferrin transport" evidence=IEA

FB|FBgn0000319 Chc "Clathrin heavy chain" [Drosophila melanogaster (taxid:7227)]

 Score = 151 (58.2 bits), Expect = 3.3e-09, P = 3.3e-09
 Identities = 33/52 (63%), Positives = 38/52 (73%)

Query:    11 YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLP          CSEDIIKNLILVV+GQFSTDELVEE
Sbjct:   800 YIEIYVQK--VNPSRLPVVVGGLLDVDCSEDIIKNLILVVKGQFSTDELVEE 849

GO:0007291 "sperm individualization" evidence=IMP

GO:0016183 "synaptic vesicle coating" evidence=NAS;TAS

GO:0008021 "synaptic vesicle" evidence=TAS

GO:0030125 "clathrin vesicle coat" evidence=TAS

GO:0005905 "coated pit" evidence=TAS

GO:0030135 "coated vesicle" evidence=TAS

GO:0007269 "neurotransmitter secretion" evidence=NAS

GO:0030129 "clathrin coat of synaptic vesicle" evidence=NAS

GO:0030132 "clathrin coat of coated pit" evidence=IEA;NAS

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0033227 "dsRNA transport" evidence=IMP

GO:0005811 "lipid particle" evidence=IDA

GO:0035002 "liquid clearance, open tracheal system" evidence=IMP

GO:0030198 "extracellular matrix organization" evidence=IMP

GO:0035159 "regulation of tube length, open tracheal system" evidence=IMP

GO:0045807 "positive regulation of endocytosis" evidence=IMP

GO:0046667 "compound eye retinal cell programmed cell death" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0031410 "cytoplasmic vesicle" evidence=IDA

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0005802 "trans-Golgi network" evidence=IDA

GO:0044459 "plasma membrane part" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0006897 "endocytosis" evidence=IMP

GO:0045747 "positive regulation of Notch signaling pathway" evidence=IMP

GO:0040008 "regulation of growth" evidence=IMP

GO:0033363 "secretory granule organization" evidence=IMP

GO:0030141 "secretory granule" evidence=IDA

GO:0007594 "puparial adhesion" evidence=IMP

GO:0048749 "compound eye development" evidence=IMP

UNIPROTKB|K7GQL8 CLTC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 32/52 (61%), Positives = 37/52 (71%)

Query:    11 YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct:    35 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 84

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F6PV15 CLTC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 147 (56.8 bits), Expect = 4.2e-09, P = 4.2e-09
 Identities = 32/52 (61%), Positives = 37/52 (71%)

Query:    11 YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct:    43 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 92

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|F1MPU0 CLTC "Clathrin heavy chain 1" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 32/52 (61%), Positives = 37/52 (71%)

Query:    11 YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct:   786 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 835

GO:0033572 "transferrin transport" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1NW23 CLTC "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 147 (56.8 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 32/52 (61%), Positives = 37/52 (71%)

Query:    11 YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct:   786 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 835

GO:0005198 "structural molecule activity" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0033572 "transferrin transport" evidence=IEA

UNIPROTKB|P49951 CLTC "Clathrin heavy chain 1" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 32/52 (61%), Positives = 37/52 (71%)

Query:    11 YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct:   799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

GO:0030117 "membrane coat" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0042470 "melanosome" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|F1PHQ0 CLTC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 147 (56.8 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 32/52 (61%), Positives = 37/52 (71%)

Query:    11 YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct:   799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

GO:0033572 "transferrin transport" evidence=IEA

GO:0031623 "receptor internalization" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0005819 "spindle" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q00610 CLTC "Clathrin heavy chain 1" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 32/52 (61%), Positives = 37/52 (71%)

Query:    11 YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct:   799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0042470 "melanosome" evidence=IEA

GO:0030118 "clathrin coat" evidence=NAS

GO:0006886 "intracellular protein transport" evidence=NAS

GO:0005198 "structural molecule activity" evidence=NAS

GO:0030136 "clathrin-coated vesicle" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005819 "spindle" evidence=IDA

GO:0007067 "mitosis" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0070062 "extracellular vesicular exosome" evidence=IDA

GO:0005829 "cytosol" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0006892 "post-Golgi vesicle-mediated transport" evidence=TAS

GO:0007173 "epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0007411 "axon guidance" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0030669 "clathrin-coated endocytic vesicle membrane" evidence=TAS

GO:0032588 "trans-Golgi network membrane" evidence=TAS

GO:0042059 "negative regulation of epidermal growth factor receptor signaling pathway" evidence=TAS

GO:0048011 "neurotrophin TRK receptor signaling pathway" evidence=TAS

GO:0031623 "receptor internalization" evidence=IMP

GO:0033572 "transferrin transport" evidence=IMP

MGI|MGI:2388633 Cltc "clathrin, heavy polypeptide (Hc)" [Mus musculus (taxid:10090)]

 Score = 147 (56.8 bits), Expect = 8.6e-09, P = 8.6e-09
 Identities = 32/52 (61%), Positives = 37/52 (71%)

Query:    11 YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct:   799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005819 "spindle" evidence=ISO

GO:0005905 "coated pit" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006898 "receptor-mediated endocytosis" evidence=ISO

GO:0007030 "Golgi organization" evidence=ISO

GO:0007067 "mitosis" evidence=ISO

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030117 "membrane coat" evidence=IDA

GO:0030118 "clathrin coat" evidence=ISO

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030136 "clathrin-coated vesicle" evidence=ISO

GO:0030315 "T-tubule" evidence=ISO

GO:0030506 "ankyrin binding" evidence=ISO

GO:0031072 "heat shock protein binding" evidence=ISO

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0031523 "Myb complex" evidence=ISO

GO:0031623 "receptor internalization" evidence=ISO

GO:0033572 "transferrin transport" evidence=ISO

GO:0042277 "peptide binding" evidence=ISO

GO:0042383 "sarcolemma" evidence=ISO

GO:0070062 "extracellular vesicular exosome" evidence=ISO

GO:0090307 "spindle assembly involved in mitosis" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P34574	CLH_CAEEL	No assigned EC number	0.6346	0.7575	0.0297	yes	N/A
P11442	CLH1_RAT	No assigned EC number	0.7884	0.7575	0.0298	yes	N/A
Q00610	CLH1_HUMAN	No assigned EC number	0.7884	0.7575	0.0298	yes	N/A
Q2RBN7	CLH1_ORYSJ	No assigned EC number	0.5348	0.6515	0.0251	yes	N/A
Q2QYW2	CLH2_ORYSJ	No assigned EC number	0.5348	0.6515	0.0251	yes	N/A
P29742	CLH_DROME	No assigned EC number	0.8269	0.7575	0.0297	yes	N/A
P49951	CLH1_BOVIN	No assigned EC number	0.7884	0.7575	0.0298	yes	N/A
P22137	CLH_YEAST	No assigned EC number	0.5116	0.6515	0.0260	yes	N/A
Q0WNJ6	CLAH1_ARATH	No assigned EC number	0.5348	0.6515	0.0252	yes	N/A
Q0WLB5	CLAH2_ARATH	No assigned EC number	0.5581	0.6515	0.0252	yes	N/A
Q68FD5	CLH1_MOUSE	No assigned EC number	0.7884	0.7575	0.0298	yes	N/A
Q10161	CLH_SCHPO	No assigned EC number	0.5581	0.6515	0.0258	yes	N/A
P25870	CLH_DICDI	No assigned EC number	0.5116	0.6515	0.0253	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
KOG0985|consensus	1666		99.93

>KOG0985|consensus

Probab=99.93  E-value=2.9e-27  Score=200.99  Aligned_cols=59  Identities=63%  Similarity=0.917  Sum_probs=58.3

Q ss_pred             CCCCcceeeEeeceeecCCCCcchhhhhhhccCCCHHHHHHHHHHhccCCChhhhhhhccC
Q psy12551          5 SKSGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEEDKI   65 (66)
Q Consensus         5 ~n~~~kyIEvYV~~qkVNP~~tP~VVG~LLDvdc~E~~Ik~LL~sV~~~~pideLVeEvE~   65 (66)
                      +|+++||||+||  |||||+|||+|||+|||+|||||+||+||+||+|++|+||||+||||
T Consensus       792 rnn~~kyIE~yV--QkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~~deLv~EvEk  850 (1666)
T KOG0985|consen  792 RNNLQKYIEIYV--QKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFPVDELVEEVEK  850 (1666)
T ss_pred             HhhHHHHHHHHH--hhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCChHHHHHHHHh
Confidence            699999999999  99999999999999999999999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	66
1xi4_A	1630	Clathrin D6 Coat Length = 1630		8e-11

>pdb|1XI4|A Chain A, Clathrin D6 Coat Length = 1630

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 32/52 (61%), Positives = 37/52 (71%), Gaps = 2/52 (3%)
Query: 11  YIPVVLRQSQVNPSRLPXXXXXXXXXXCSEDIIKNLILVVRGQFSTDELVEE 62
           YI + +++  VNPSRLP          CSED+IKNLILVVRGQFSTDELV E
Sbjct: 799 YIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	3e-17

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A Length = 1630

 Score = 72.8 bits (178), Expect = 3e-17
 Identities = 41/54 (75%), Positives = 47/54 (87%), Gaps = 2/54 (3%)

Query: 9   LTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
             YI + +++  VNPSRLPVV+GGLLDVDCSED+IKNLILVVRGQFSTDELV E
Sbjct: 797 QKYIEIYVQK--VNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAE 848

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.91
1i2t_A	61	HYD protein; four alpha-helical domain, ligase; 1.	82.21

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.91  E-value=3.6e-26  Score=195.45  Aligned_cols=59  Identities=69%  Similarity=1.048  Sum_probs=58.1

Q ss_pred             CCCCcceeeEeeceeecCCCCcchhhhhhhccCCCHHHHHHHHHHhccCCChhhhhhhccC
Q psy12551          5 SKSGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEEDKI   65 (66)
Q Consensus         5 ~n~~~kyIEvYV~~qkVNP~~tP~VVG~LLDvdc~E~~Ik~LL~sV~~~~pideLVeEvE~   65 (66)
                      +|+++||||+||  |||||+|||+|||+|||+|||||+||+||++|+++||++|||+||||
T Consensus       793 ~n~~~~~ie~yv--~~vnp~~~p~Vvg~lld~d~~e~~ik~ll~~v~~~~~~~~lv~~~ek  851 (1630)
T 1xi4_A          793 RNNLQKYIEIYV--QKVNPSRLPVVIGGLLDVDCSEDVIKNLILVVRGQFSTDELVAEVEK  851 (1630)
T ss_pred             hcCchhHHHHHH--hccCCcccchhhhhhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence            689999999999  99999999999999999999999999999999999999999999997

>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A

Probab=82.21  E-value=0.14  Score=30.15  Aligned_cols=29  Identities=17%  Similarity=0.306  Sum_probs=23.3

Q ss_pred             eecCCCCcchhhhhhhccCCCHHHHHHHHHH
Q psy12551         19 SQVNPSRLPVVVGGLLDVDCSEDIIKNLILV   49 (66)
Q Consensus        19 qkVNP~~tP~VVG~LLDvdc~E~~Ik~LL~s   49 (66)
                      ++.+|..++.+-|-||+.|-+|  +-.||.+
T Consensus        14 ~~~~p~~A~KITGMLLE~d~~e--ll~ll~~   42 (61)
T 1i2t_A           14 QAMQPAFASKITGMLLELSPAQ--LLLLLAS   42 (61)
T ss_dssp             HHHCGGGHHHHHHHHTTSCHHH--HHHHHHC
T ss_pred             HHhCcccccchhhhhccCCHHH--HHHHHcC
Confidence            5689999999999999997766  4556554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	66
d1b89a_	336	a.118.1.3 (A:) Clathrin heavy chain proximal leg s	4e-07

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} Length = 336

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.5 bits (100), Expect = 4e-07
 Identities = 5/45 (11%), Positives = 14/45 (31%), Gaps = 2/45 (4%)

Query: 18  QSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEE 62
               N       +   L+      ++ +L++V+  +      V  
Sbjct: 215 TKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTRAVNY 257

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.81

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.81  E-value=5.2e-11  Score=84.97  Aligned_cols=55  Identities=9%  Similarity=0.086  Sum_probs=51.5

Q ss_pred             CCcceeeEeeceeecCCCCcchhhhhhhccCCCHHHHHHHHHHhccCCChhhhhhhccC
Q psy12551          7 SGLTYIPVVLRQSQVNPSRLPVVVGGLLDVDCSEDIIKNLILVVRGQFSTDELVEEDKI   65 (66)
Q Consensus         7 ~~~kyIEvYV~~qkVNP~~tP~VVG~LLDvdc~E~~Ik~LL~sV~~~~pideLVeEvE~   65 (66)
                      +..+|||+|+  +++||..+|+|+|.+||  |.+++|++||.+|++.++...+|+++|+
T Consensus       206 ~~~~f~e~~~--k~~N~e~~~~~i~~yL~--~~p~~i~~lL~~v~~~~d~~r~V~~~~k  260 (336)
T d1b89a_         206 KEGQFKDIIT--KVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRLDHTRAVNYFSK  260 (336)
T ss_dssp             CHHHHHHHHH--HCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred             hHHHHHHHHH--ccCChHHHHHHHHHHHH--cCHHHHHHHHHHhccCCCHHHHHHHHHh
Confidence            4568999999  99999999999999996  7899999999999999999999999986