Psyllid ID: psy12599

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MVDLVDRRDEAMTSSLDDLVPTLSSRIRNQSKSSTLPVVEVVEFKAYKRKSKALEDDPADDQLTANDLVPTLSSRIRNQSKSSTPPVVEVVEFKAYKRKSKALEDDPADDQLTAKKKDEVVDMKKARFEIMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR
Secondary Structure (PSIPRED)
ccccccccHHHHHHcccHHHHHHHHHHHccccccccccEEEEEEHHHHHHHcccccccccccccccccccHHHHHHHcccccccccEEEEEEEHHHHHHHcccccccccHHHHHHHHHHHcccHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccHHHHHHcccHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHccHHcccccccHHHccccccccccEEEEEEEEHHHHHcHHccccccccHccHHcccccccHHHHcccccccccEEEEEEEEHHHHHcHHccccccccHcccccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHccccccccHHHHHHcccHHHHHHHHccHHc
Coil and Loop (DISEMBL)
MVDLVDRRDEAMTSSLDDLVPTlssrirnqsksstlpvvevVEFKAYKRkskaleddpaddqltandlvptlssrirnqsksstppvveVVEFKAYKRkskaleddpaddqltakkkDEVVDMKKARFEIMKFGmnrmtgrekekTKDIIAIELGKVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQkrrnvpladstdeddIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLlssdknppiealihsgilPVLVECLERSDR
Flexible Loop (DISEMBL)
mvdlvdrrdeamtsslddlvptlssrirnqsksstlpvvevveFKAYKRKskaleddpaddqltaNDLVPtlssrirnqsksstppvvevvefkaykrkskaleddpaddqltakkkdevvdMKKARFEIMkfgmnrmtgrekektkdiiaielgkvkhrlievdkemrrrrnevtvelrknkreetlqkrrnvpladstdeddiEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPiealihsgilpvlveclersdr
Low Complexity Region (SEG)
MVDLVDRRDEAMTSSLDDLVPTLSSRIRNQSKSSTLPVVEVVEFKAYKRKSKALEDDPADDQLTANDLVPTLSSRIRNQSKSSTPPVVEVVEFKAYKRKSKALEDDPADDQLTAKKKDEVVDMKKARFEIMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR
Disordered region (IsUnstruct)
*************************************VVEVVEFK**********************************************************************************FEIMKF*************KDIIAIELGKVKHRLIEV**********************************************VNLDMLVVE**********LL****************IEALIHSGILPVLVECL*****
Disordered Region (DISOPRED)
**D**D*RDEAMTSSLDDLVPTL************LPVVEVVEFKAY**************QLTANDLVPT****************VEVVEFKAY********************************************************************************************************************LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER***
Disordered Region (DISEMBL)
*********EAMTSSLDDLVPTLSSRIRNQSKSSTLPVVEVVEFKAYKRKSKALEDDPADDQLTANDLVPTLSSRI**********VVEVVEFKAYKRKSKALEDDPADDQLTAKKKDEVVDMKKARFEIMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR
Disordered Region (DISPRO)
*************SSLDDLVPTLSS*****SKSSTLPVVEVVEFKAYKRKSKALEDDPADDQLTANDLVPTLSS*****SKSSTPPVVEVVEFKAYKRKSKALED*PADDQLTAKKKDEVVDMKKARFEIMKFGMNR************************IEV*KEMRRRRNEVTVELRKNKREETLQKRRN**************MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVDLVDRRDEAMTSSLDDLVPTLSSRIRNQSKSSTLPVVEVVEFKAYKRKSKALEDDPADDQLTANDLVPTLSSRIRNQSKSSTPPVVEVVEFKAYKRKSKALEDDPADDQLTAKKKDEVVDMKKARFEIMKFGMNRMTGREKEKTKDIIAIELGKVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	269	2.2.26 [Sep-21-2011]
O35344	521	Importin subunit alpha-3	yes	N/A	0.375	0.193	0.6	4e-26
O00505	521	Importin subunit alpha-3	yes	N/A	0.375	0.193	0.6	4e-26
O00629	521	Importin subunit alpha-4	no	N/A	0.379	0.195	0.605	1e-25
O35343	521	Importin subunit alpha-4	no	N/A	0.379	0.195	0.605	2e-25
Q19969	514	Importin subunit alpha-3	yes	N/A	0.360	0.188	0.5	1e-18
P52293	529	Importin subunit alpha-2	no	N/A	0.379	0.192	0.439	2e-13
P52295	522	Importin subunit alpha OS	no	N/A	0.368	0.189	0.407	2e-13
P52170	522	Importin subunit alpha-1	N/A	N/A	0.379	0.195	0.429	4e-13
P52292	529	Importin subunit alpha-2	no	N/A	0.379	0.192	0.439	5e-13
P52171	523	Importin subunit alpha-2	N/A	N/A	0.375	0.193	0.398	3e-11

>sp|O35344|IMA3_MOUSE Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 80/105 (76%), Gaps = 4/105 (3%)

Query: 168 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 224
           MRR RNEVTVELRKNKR+E L K+RNVP  +S ++ D++   K   V L+  +++ A  D
Sbjct: 25  MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 83

Query: 225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
           NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D 
Sbjct: 84  NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDN 128

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS.
Mus musculus (taxid: 10090)

>sp|O00505|IMA3_HUMAN Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2

 Score =  118 bits (296), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/105 (60%), Positives = 80/105 (76%), Gaps = 4/105 (3%)

Query: 168 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 224
           MRR RNEVTVELRKNKR+E L K+RNVP  +S ++ D++   K   V L+  +++ A  D
Sbjct: 25  MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 83

Query: 225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
           NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D 
Sbjct: 84  NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDN 128

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. Recognizes NLSs of influenza A virus nucleoprotein probably through ARM repeats 7-9.

Homo sapiens (taxid: 9606)

>sp|O00629|IMA4_HUMAN Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1

 Score =  116 bits (291), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 168 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 225
           MRR+RNEV VELRKNKR+E L KRRNVP  D  ++ DI+   +V    L  +V+ A  DN
Sbjct: 25  MRRQRNEVVVELRKNKRDEHLLKRRNVPHEDICEDSDIDGDYRVQNTSLEAIVQNASSDN 84

Query: 226 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
             +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D 
Sbjct: 85  QGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDN 128

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a nonclassical NLS.

Homo sapiens (taxid: 9606)

>sp|O35343|IMA4_MOUSE Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1

 Score =  116 bits (291), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 63/104 (60%), Positives = 76/104 (73%), Gaps = 2/104 (1%)

Query: 168 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 225
           MRR+RNEV VELRKNKR+E L KRRNVP  D  ++ DI+   +V    L  +V+ A  DN
Sbjct: 25  MRRQRNEVVVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQNTSLEAIVQNASSDN 84

Query: 226 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
             +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D 
Sbjct: 85  QGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDN 128

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|Q19969|IMA3_CAEEL Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2

 Score = 94.0 bits (232), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 69/106 (65%), Gaps = 9/106 (8%)

Query: 169 RRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQ------VNLDMLVVEAAR 222
           + +RNE  V +RK+KREE + KRRN+   ++  EDD E           NL  L V AA+
Sbjct: 19  KEKRNEEVVSIRKDKREEAISKRRNI---NTQIEDDSETSTTPPGPFDANLLRLTVAAAQ 75

Query: 223 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             +P  QL AVQ ARK+LS+D+NPPI+ LI SGILPVLV+CL  +D
Sbjct: 76  SSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSSTD 121

Essential gene for embryonic and larval development. Required for oogenic development, ima-1 and ima-2 cannot functionally compensate for loss of ima-3.

Caenorhabditis elegans (taxid: 6239)

>sp|P52293|IMA2_MOUSE Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 5/107 (4%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAA 221
           EMRRRR EV VELRK K++E + KRRNV      A S  +++      VN  +  +V+  
Sbjct: 26  EMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGI 85

Query: 222 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 86  NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 132

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Mus musculus (taxid: 10090)

>sp|P52295|IMA_DROME Importin subunit alpha OS=Drosophila melanogaster GN=Pen PE=1 SV=2

 Score = 76.3 bits (186), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/103 (40%), Positives = 69/103 (66%), Gaps = 4/103 (3%)

Query: 169 RRRRNEVTVELRKNKREETLQKRRNVPLADSTD---EDDIEKMAQVNLDMLVVEAARKDN 225
           R RR+EVT+ELRK+K+E+ + KRRN+   D T    E + +   Q+++D  +V A   ++
Sbjct: 24  RMRRHEVTIELRKSKKEDQMFKRRNINDEDLTSPLKELNGQSPVQLSVDE-IVAAMNSED 82

Query: 226 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
            E Q L +QSARK+LS ++NPPI+ +I  GI+P+ +  L+ ++
Sbjct: 83  QERQFLGMQSARKMLSRERNPPIDLMIGHGIVPICIRFLQNTN 125

It is required for normal cell proliferation and may serve as an adapter molecule to form complexes with other proteins. May act as a tumor suppressor in hematopoietic cells. May play a role in the nuclear import of karyophilic proteins and some of these may be required for the normal transmission and function of proliferative signals in the cells.

Drosophila melanogaster (taxid: 7227)

>sp|P52170|IMA1_XENLA Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2

 Score = 75.5 bits (184), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 68/107 (63%), Gaps = 5/107 (4%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADS---TDEDDIEKMAQVNLDML--VVEAA 221
           E+RRRR EV+VELRK K++E + KRRNV L +    + E +  +  QV    L  +V+  
Sbjct: 23  ELRRRRVEVSVELRKAKKDEQILKRRNVCLPEELILSPEKNAMQSVQVPPLSLEEIVQGM 82

Query: 222 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
              +PE +L   Q+ARK+LS ++NPP+  +I +G++P LVE L R D
Sbjct: 83  NSGDPENELRCTQAARKMLSRERNPPLNDIIEAGLIPKLVEFLSRHD 129

Essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope.

Xenopus laevis (taxid: 8355)

>sp|P52292|IMA2_HUMAN Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 65/107 (60%), Gaps = 5/107 (4%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAA 221
           EMRRRR EV VELRK K+++ + KRRNV      A S  +++      VN  +  +V+  
Sbjct: 26  EMRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVDDIVKGI 85

Query: 222 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
              N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L R+D
Sbjct: 86  NSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTD 132

Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus.

Homo sapiens (taxid: 9606)

>sp|P52171|IMA2_XENLA Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 43/108 (39%), Positives = 72/108 (66%), Gaps = 7/108 (6%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLAD----STDEDDIE--KMAQVNLDMLVVEA 220
           E+RRRR EV+VELRK K++E + KRRNV   +    S +++ ++  ++ Q++L+ +V   
Sbjct: 23  ELRRRRVEVSVELRKAKKDEQILKRRNVCFPEELILSPEKNAMQSIQVPQLSLEEIVQGM 82

Query: 221 ARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
              DN E +L + Q+ARK+LS ++NPP+  +I +G++P LVE L   +
Sbjct: 83  NSGDN-ENELRSTQAARKMLSKERNPPLNDIIEAGLIPKLVEFLSYHN 129

It is essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope.

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
270007768	526	hypothetical protein TcasGA2_TC014465 [T	0.379	0.193	0.786	1e-37
189237585	1121	PREDICTED: similar to importin alpha [Tr	0.379	0.090	0.786	2e-37
357602010	512	karyopherin alpha 3 [Danaus plexippus]	0.379	0.199	0.718	8e-34
389612062	225	karyopherin alpha3, partial [Papilio xut	0.371	0.444	0.715	2e-33
114053323	516	karyopherin alpha 3 [Bombyx mori] gi|951	0.382	0.199	0.701	4e-33
332028650	514	Importin subunit alpha-4 [Acromyrmex ech	0.379	0.198	0.721	5e-33
322799949	514	hypothetical protein SINV_06287 [Solenop	0.379	0.198	0.721	5e-33
307204672	517	Importin subunit alpha-4 [Harpegnathos s	0.379	0.197	0.730	9e-33
383854227	515	PREDICTED: importin subunit alpha-4-like	0.382	0.2	0.676	2e-30
307189922	514	Importin subunit alpha-4 [Camponotus flo	0.368	0.192	0.715	2e-30

>gi|270007768|gb|EFA04216.1| hypothetical protein TcasGA2_TC014465 [Tribolium castaneum]

 Score =  162 bits (410), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 91/103 (88%), Gaps = 1/103 (0%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDN 225
           EMRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDIEK ++  NL+ LV +AA  DN
Sbjct: 22  EMRRRRNEVTVELRKNKREETLQKRRNVPVVDSTDEDDIEKSLSTTNLEELVAQAAAIDN 81

Query: 226 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           P LQL+A+Q+ARKLLSSD+NPPI+ALI SGILPVLV CLER D
Sbjct: 82  PPLQLMAIQTARKLLSSDRNPPIDALISSGILPVLVMCLERYD 124

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237585|ref|XP_975030.2| PREDICTED: similar to importin alpha [Tribolium castaneum]

 Score =  162 bits (409), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/103 (78%), Positives = 91/103 (88%), Gaps = 1/103 (0%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDN 225
           EMRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDIEK ++  NL+ LV +AA  DN
Sbjct: 627 EMRRRRNEVTVELRKNKREETLQKRRNVPVVDSTDEDDIEKSLSTTNLEELVAQAAAIDN 686

Query: 226 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           P LQL+A+Q+ARKLLSSD+NPPI+ALI SGILPVLV CLER D
Sbjct: 687 PPLQLMAIQTARKLLSSDRNPPIDALISSGILPVLVMCLERYD 729

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357602010|gb|EHJ63242.1| karyopherin alpha 3 [Danaus plexippus]

 Score =  149 bits (377), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 74/103 (71%), Positives = 90/103 (87%), Gaps = 1/103 (0%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDN 225
           EMRRRRNEVTVELRKNKREETLQKRRNVP++ STDEDDI++ +A  +L+ LV++AA  +N
Sbjct: 22  EMRRRRNEVTVELRKNKREETLQKRRNVPVSYSTDEDDIDRTLASTDLEELVMKAANAEN 81

Query: 226 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           PE QL AVQ  RKLLSSDKNPPI++LI +GILP+LV+CL R+D
Sbjct: 82  PEEQLAAVQQCRKLLSSDKNPPIDSLITTGILPILVQCLSRTD 124

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|389612062|dbj|BAM19560.1| karyopherin alpha3, partial [Papilio xuthus]

 Score =  148 bits (374), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 88/102 (86%), Gaps = 2/102 (1%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNP 226
           EMRRRRNEVTVELRKNKREETLQKRRNVP++DSTDED++E+    N++ LV+ AA+ DN 
Sbjct: 22  EMRRRRNEVTVELRKNKREETLQKRRNVPISDSTDEDEVER--PTNIEELVINAAKADNI 79

Query: 227 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           E+QL AVQ  RKLLSSDKNPPI+ LI +GILP+LV+CL R+D
Sbjct: 80  EIQLAAVQQCRKLLSSDKNPPIDELIAAGILPILVQCLSRAD 121

Source: Papilio xuthus

Species: Papilio xuthus

Genus: Papilio

Family: Papilionidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|114053323|ref|NP_001040340.1| karyopherin alpha 3 [Bombyx mori] gi|95102560|gb|ABF51218.1| karyopherin alpha 3 [Bombyx mori]

 Score =  147 bits (372), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 73/104 (70%), Positives = 87/104 (83%), Gaps = 1/104 (0%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDN 225
           EMRRRRNEVTVELRKNKREETLQKRRNVP++ STDE++I+K +A  +LD LV+ AA  +N
Sbjct: 22  EMRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAEN 81

Query: 226 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
           PE QL AVQ  RKLLS DKNPPI+ LI +GILP+LV+CL R+D 
Sbjct: 82  PEAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSRADN 125

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332028650|gb|EGI68684.1| Importin subunit alpha-4 [Acromyrmex echinatior]

 Score =  147 bits (371), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 90/104 (86%), Gaps = 2/104 (1%)

Query: 166 KEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKD 224
           +EMRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDI+K ++++NL+ LV +A   D
Sbjct: 23  EEMRRRRNEVTVELRKNKREETLQKRRNVPITDSTDEDDIDKQLSKINLEELVAKAGSLD 82

Query: 225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
            P +QL AVQSARKLLSSD+NPPI+ LI SGILP+LV CLE+ +
Sbjct: 83  -PTVQLQAVQSARKLLSSDRNPPIDPLIDSGILPILVHCLEQHN 125

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322799949|gb|EFZ21075.1| hypothetical protein SINV_06287 [Solenopsis invicta]

 Score =  147 bits (370), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 90/104 (86%), Gaps = 2/104 (1%)

Query: 166 KEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKD 224
           +EMRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDI+K ++++NL+ LV +A   D
Sbjct: 23  EEMRRRRNEVTVELRKNKREETLQKRRNVPITDSTDEDDIDKQLSKINLEELVAKAGSLD 82

Query: 225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
            P +QL AVQSARKLLSSD+NPPI+ LI SGILP+LV CLE+ +
Sbjct: 83  -PTVQLQAVQSARKLLSSDRNPPIDPLIESGILPILVRCLEQHN 125

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307204672|gb|EFN83282.1| Importin subunit alpha-4 [Harpegnathos saltator]

 Score =  146 bits (368), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 76/104 (73%), Positives = 90/104 (86%), Gaps = 2/104 (1%)

Query: 166 KEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKD 224
           +EMRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDI+K +A+++L+ LV +AA  D
Sbjct: 24  EEMRRRRNEVTVELRKNKREETLQKRRNVPITDSTDEDDIDKHLAKISLEELVAKAASSD 83

Query: 225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
            P  QL AVQSARKLLSSD+NPPI+ LI SGILP+LV CLE+ +
Sbjct: 84  -PTEQLQAVQSARKLLSSDRNPPIDPLIESGILPILVGCLEQHN 126

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854227|ref|XP_003702623.1| PREDICTED: importin subunit alpha-4-like [Megachile rotundata]

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/105 (67%), Positives = 88/105 (83%), Gaps = 2/105 (1%)

Query: 166 KEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKD 224
           +EMRRRRNEVTVELRKNKR ETLQKRRNVP+ D TDE+D++K ++++NL  LV++A   D
Sbjct: 22  EEMRRRRNEVTVELRKNKRNETLQKRRNVPITDLTDEEDVDKHLSKINLKELVMDAKSPD 81

Query: 225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
            P +QL AV SAR+LLSSD+NPPI+ LIHSGILPVLV CL+  D+
Sbjct: 82  -PTIQLQAVVSARRLLSSDRNPPIDRLIHSGILPVLVRCLQEHDK 125

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307189922|gb|EFN74158.1| Importin subunit alpha-4 [Camponotus floridanus]

 Score =  139 bits (349), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 73/102 (71%), Positives = 88/102 (86%), Gaps = 3/102 (2%)

Query: 166 KEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKD 224
           +EMRRRRNEVTVELRKNKR+ETLQKRRNVP  DSTDEDDI+K +++++L+ LV +A   D
Sbjct: 23  EEMRRRRNEVTVELRKNKRDETLQKRRNVP-TDSTDEDDIDKHLSKISLEELVAKAGSSD 81

Query: 225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER 266
            P +QL AVQSARKLLSSD+NPPI+ LI SGILP+LV CLE+
Sbjct: 82  -PAIQLQAVQSARKLLSSDRNPPIDPLIESGILPILVRCLEQ 122

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	269
UNIPROTKB|F1RK23	322	KPNA3 "Uncharacterized protein	0.371	0.310	0.605	5.7e-27
FB|FBgn0027338	514	Kap-alpha3 "karyopherin alpha3	0.371	0.194	0.64	6.3e-27
UNIPROTKB|O00505	521	KPNA3 "Importin subunit alpha-	0.405	0.209	0.577	1.5e-26
MGI|MGI:1100863	521	Kpna3 "karyopherin (importin)	0.405	0.209	0.577	1.5e-26
RGD|1311339	521	Kpna3 "karyopherin alpha 3" [R	0.405	0.209	0.577	1.5e-26
UNIPROTKB|F1MIZ9	497	KPNA3 "Importin subunit alpha"	0.371	0.201	0.605	1.5e-26
UNIPROTKB|F1PV58	497	KPNA3 "Importin subunit alpha"	0.371	0.201	0.605	1.5e-26
ZFIN|ZDB-GENE-030616-541	520	kpna3 "karyopherin (importin)	0.405	0.209	0.568	2.4e-25
UNIPROTKB|E2RPB3	521	KPNA4 "Importin subunit alpha"	0.382	0.197	0.6	3.2e-25
MGI|MGI:1100848	521	Kpna4 "karyopherin (importin)	0.375	0.193	0.611	3.2e-25

UNIPROTKB|F1RK23 KPNA3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query:   168 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 224
             MRR RNEVTVELRKNKR+E L K+RNVP  +S ++ D++   K   V L+  +++ A  D
Sbjct:     3 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 61

Query:   225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D
Sbjct:    62 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDD 105

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

FB|FBgn0027338 Kap-alpha3 "karyopherin alpha3" [Drosophila melanogaster (taxid:7227)]

 Score = 307 (113.1 bits), Expect = 6.3e-27, P = 6.3e-27
 Identities = 64/100 (64%), Positives = 76/100 (76%)

Query:   167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNP 226
             EMRRRRNEVTVELRKNKREET+ KRRNVP  DS  +++ +  + ++L  L   AA    P
Sbjct:    21 EMRRRRNEVTVELRKNKREETILKRRNVPNLDSNTDEEEQLSSSIDLKKLAKAAADATKP 80

Query:   227 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER 266
             E QL AVQ+ARKLLSSDKNPPI  LI S ILP+LVECL++
Sbjct:    81 EQQLAAVQAARKLLSSDKNPPINDLIQSDILPILVECLKQ 120

GO:0005643 "nuclear pore" evidence=ISS;NAS

GO:0006606 "protein import into nucleus" evidence=ISS;NAS

GO:0008565 "protein transporter activity" evidence=ISS

GO:0008320 "protein transmembrane transporter activity" evidence=NAS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0051533 "positive regulation of NFAT protein import into nucleus" evidence=IMP

GO:0009411 "response to UV" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

UNIPROTKB|O00505 KPNA3 "Importin subunit alpha-3" [Homo sapiens (taxid:9606)]

 Score = 304 (112.1 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 67/116 (57%), Positives = 85/116 (73%)

Query:   156 KVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVN 212
             K K R +E    MRR RNEVTVELRKNKR+E L K+RNVP  +S ++ D++   K   V 
Sbjct:    16 KNKGRDVET---MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVT 72

Query:   213 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             L+  +++ A  DNP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D
Sbjct:    73 LEA-ILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDD 127

GO:0008565 "protein transporter activity" evidence=IEA

GO:0046718 "viral entry into host cell" evidence=IEA

GO:0075732 "viral penetration into host nucleus" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0005643 "nuclear pore" evidence=TAS

GO:0006461 "protein complex assembly" evidence=TAS

GO:0006607 "NLS-bearing substrate import into nucleus" evidence=TAS

GO:0008139 "nuclear localization sequence binding" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0019221 "cytokine-mediated signaling pathway" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1100863 Kpna3 "karyopherin (importin) alpha 3" [Mus musculus (taxid:10090)]

 Score = 304 (112.1 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 67/116 (57%), Positives = 85/116 (73%)

Query:   156 KVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVN 212
             K K R +E    MRR RNEVTVELRKNKR+E L K+RNVP  +S ++ D++   K   V 
Sbjct:    16 KNKGRDVET---MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVT 72

Query:   213 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             L+  +++ A  DNP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D
Sbjct:    73 LEA-ILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDD 127

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

RGD|1311339 Kpna3 "karyopherin alpha 3" [Rattus norvegicus (taxid:10116)]

 Score = 304 (112.1 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 67/116 (57%), Positives = 85/116 (73%)

Query:   156 KVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVN 212
             K K R +E    MRR RNEVTVELRKNKR+E L K+RNVP  +S ++ D++   K   V 
Sbjct:    16 KNKGRDVET---MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVT 72

Query:   213 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             L+  +++ A  DNP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D
Sbjct:    73 LEA-ILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDD 127

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA;ISO

GO:0008565 "protein transporter activity" evidence=IEA

UNIPROTKB|F1MIZ9 KPNA3 "Importin subunit alpha" [Bos taurus (taxid:9913)]

 Score = 303 (111.7 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query:   168 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 224
             MRR RNEVTVELRKNKR+E L K+RNVP  +S ++ D++   K   V L+  +++ A  D
Sbjct:     1 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 59

Query:   225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D
Sbjct:    60 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDD 103

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|F1PV58 KPNA3 "Importin subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 303 (111.7 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 63/104 (60%), Positives = 80/104 (76%)

Query:   168 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 224
             MRR RNEVTVELRKNKR+E L K+RNVP  +S ++ D++   K   V L+  +++ A  D
Sbjct:     1 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 59

Query:   225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D
Sbjct:    60 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDD 103

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-030616-541 kpna3 "karyopherin (importin) alpha 3" [Danio rerio (taxid:7955)]

 Score = 293 (108.2 bits), Expect = 2.4e-25, P = 2.4e-25
 Identities = 66/116 (56%), Positives = 83/116 (71%)

Query:   156 KVKHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVN 212
             K K R +E    MRR RNEVTVELRKNKR+E L K+RNVP  +S ++ D++   K   V 
Sbjct:    16 KNKGRDVET---MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDSDFKGQNVT 72

Query:   213 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             LD  +++ A  DN  +QL AVQ+ARKLLSSD+NPPI+ LI  GILP+LV+CLER D
Sbjct:    73 LDA-ILQNATSDNAVVQLSAVQAARKLLSSDRNPPIDDLIKCGILPILVKCLERDD 127

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

UNIPROTKB|E2RPB3 KPNA4 "Importin subunit alpha" [Canis lupus familiaris (taxid:9615)]

 Score = 292 (107.8 bits), Expect = 3.2e-25, P = 3.2e-25
 Identities = 63/105 (60%), Positives = 77/105 (73%)

Query:   166 KEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARK 223
             + MRR+RNEV VELRKNKR+E L KRRNVP  D  ++ DI+   +V    L  +V+ A  
Sbjct:    23 RTMRRQRNEVVVELRKNKRDEHLLKRRNVPHEDICEDSDIDGDYRVQNTSLEAIVQNASS 82

Query:   224 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             DN  +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D
Sbjct:    83 DNQGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDD 127

GO:0008565 "protein transporter activity" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1100848 Kpna4 "karyopherin (importin) alpha 4" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 3.2e-25, P = 3.2e-25
 Identities = 63/103 (61%), Positives = 76/103 (73%)

Query:   168 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 225
             MRR+RNEV VELRKNKR+E L KRRNVP  D  ++ DI+   +V    L  +V+ A  DN
Sbjct:    25 MRRQRNEVVVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQNTSLEAIVQNASSDN 84

Query:   226 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
               +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D
Sbjct:    85 QGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDD 127

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006606 "protein import into nucleus" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0008565 "protein transporter activity" evidence=IDA

GO:0015031 "protein transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	269
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	7e-16
pfam01749	97	pfam01749, IBB, Importin beta binding domain	1e-11

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 76.9 bits (189), Expect = 7e-16
 Identities = 44/105 (41%), Positives = 58/105 (55%), Gaps = 2/105 (1%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKD 224
           E+RRRR E  VELRK KREE L KRRN+       E     M Q     L  + +    D
Sbjct: 24  ELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSD 83

Query: 225 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 269
           + E QL AV   RKLLS + +PPI+ +I +G++P  VE ++   R
Sbjct: 84  DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQR 128

Length = 526

>gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain

 Score = 59.3 bits (144), Expect = 1e-11
 Identities = 34/76 (44%), Positives = 45/76 (59%), Gaps = 7/76 (9%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLAD---STDEDDIEKMAQVNL----DMLVVE 219
           EMRRRR EV VELRKNKREE L KRRNV L     +  E +++  +  +       ++V+
Sbjct: 22  EMRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPESELDGSSDADQLSLELPVMVQ 81

Query: 220 AARKDNPELQLLAVQS 235
               D+PE QL A Q+
Sbjct: 82  GVNSDDPENQLSATQA 97

This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	269
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.89
KOG0166|consensus	514		99.83
PF15375	135	DUF4602: Domain of unknown function (DUF4602)	99.55
PF01749	97	IBB: Importin beta binding domain; InterPro: IPR00	99.53
KOG0166|consensus	514		96.08
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	94.37
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	94.09
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	92.91
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	92.67
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	88.04
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	82.67

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.89  E-value=1.2e-23  Score=201.54  Aligned_cols=103  Identities=40%  Similarity=0.577  Sum_probs=87.3

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCC-Cch--hHHHhhhhccHHHHHHHHhCCChHHHHHHHHHHHHhh
Q psy12599        164 VDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADST-DED--DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLL  240 (269)
Q Consensus       164 ~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~-d~~--~~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~RKLL  240 (269)
                      .++++||+|++.+|||||+||||.|.||||+...++. ++.  .+.......| |++.+.++|+|.+.|++|+.+||++|
T Consensus        21 ~adelRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~el-p~lt~~l~SdDie~q~qav~kFR~~L   99 (526)
T COG5064          21 SADELRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSEL-PQLTQQLFSDDIEQQLQAVYKFRKLL   99 (526)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCchhHHhhhhh-HHHHHHHhhhHHHHHHHHHHHHHHHh
Confidence            4899999999999999999999999999997432221 111  1222333478 99999999999999999999999999


Q ss_pred             cCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599        241 SSDKNPPIEALIHSGILPVLVECLERS  267 (269)
Q Consensus       241 S~EkNPPIDeVIesGVVPrfVeFLs~~  267 (269)
                      |+|.+||||.||++|+|||||+||...
T Consensus       100 S~E~~PPIq~VIdaGvVpRfvefm~~~  126 (526)
T COG5064         100 SKETSPPIQPVIDAGVVPRFVEFMDEI  126 (526)
T ss_pred             ccccCCCchhHHhccccHHHHHHHHhc
Confidence            999999999999999999999999643

>KOG0166|consensus

Probab=99.83  E-value=1.3e-20  Score=186.03  Aligned_cols=109  Identities=49%  Similarity=0.639  Sum_probs=87.4

Q ss_pred             ccchhhcHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCCCc-hhHHHhhhhccHHHHHHHHhCCChHHHHHHHHHH
Q psy12599        158 KHRLIEVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDE-DDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSA  236 (269)
Q Consensus       158 K~~yvn~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~d~-~~~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~  236 (269)
                      |++. .+++++||||+|.+|||||+||+|+|+||||........+ ..........+ +.++++++|+|+..|+.|+++|
T Consensus        13 k~~~-~~~~e~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~S~~~~~q~~a~~~~   90 (514)
T KOG0166|consen   13 KNKG-VDAEEMRRRREEQVVEIRKNKREESLLKRRNDEEELMLDELLSDSQSQASNL-ELMLAALYSDDPQQQLTATQAF   90 (514)
T ss_pred             hhcc-ccHHHHHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHHhhhh-HHHHHHHhCCCHHHHHHHHHHH
Confidence            3444 5789999999999999999999999999999321111111 00111111235 8899999999999999999999


Q ss_pred             HHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        237 RKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       237 RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      ||+||.++||||++||.+|+||+||+||.+++
T Consensus        91 rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~  122 (514)
T KOG0166|consen   91 RKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD  122 (514)
T ss_pred             HHHHccCCCCCHHHHHHcCcHHHHHHHHccCC
Confidence            99999999999999999999999999998664

>PF15375 DUF4602: Domain of unknown function (DUF4602)

Probab=99.55  E-value=4e-15  Score=123.35  Aligned_cols=54  Identities=30%  Similarity=0.507  Sum_probs=49.2

Q ss_pred             hhhhhhhhhhhhhheeeeecccCCCchhhhHHHHHHHHHhcc--cccchhhcHHHH
Q psy12599        115 KKKDEVVDMKKARFEIMKFGMNRMTGREKEKTKDIIAIELGK--VKHRLIEVDKEM  168 (269)
Q Consensus       115 ~kk~qe~~l~kaR~Ev~rFGmsG~~k~k~r~~e~e~AI~lg~--~K~~yvn~~eel  168 (269)
                      ....+++||+++|+|||+||||||++...+.+++++||+|||  +|..|+||..-+
T Consensus        36 ~~~~~~~~l~k~~~eV~~fg~s~~~~~~r~~~e~~~~i~LGaKp~K~~~~pyk~l~   91 (135)
T PF15375_consen   36 EKEEQEFDLKKARKEVEKFGISGLDKKDRRKAENERAISLGAKPPKNQYVPYKELK   91 (135)
T ss_pred             chhhHHHhHHHHHHHHHHHccccCcHHHHHHHHHHHHHHcCCCCCCCCCcCHHHHH
Confidence            335599999999999999999999999999999999999999  999999996433

>PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=99.53  E-value=3.6e-15  Score=118.21  Aligned_cols=71  Identities=46%  Similarity=0.634  Sum_probs=51.1

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCCCc---hhHHH-----hhhhccHHHHHHHHhCCChHHHHHHHHH
Q psy12599        164 VDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDE---DDIEK-----MAQVNLDMLVVEAARKDNPELQLLAVQS  235 (269)
Q Consensus       164 ~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~d~---~~~~~-----~~~~~L~~eIV~~I~S~D~~~QLeAtq~  235 (269)
                      +++++||+|+|++|||||+||||+|+||||+.......+   .....     .....+ +.|+.+|+|+|+..||+||++
T Consensus        19 d~~e~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~v~~v~S~d~~~ql~Atq~   97 (97)
T PF01749_consen   19 DAEEMRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEEL-PEMVAGVNSDDPEVQLEATQQ   97 (97)
T ss_dssp             SHHHHHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHH-HHHHHHHTSSCHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCcccccccccccccccccccccccc-HHHHHhcCCCCHHHHHHhhCC
Confidence            479999999999999999999999999999854322211   11111     123567 899999999999999999985

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C ....

>KOG0166|consensus

Probab=96.08  E-value=0.0095  Score=60.39  Aligned_cols=56  Identities=23%  Similarity=0.293  Sum_probs=49.3

Q ss_pred             hccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        211 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       211 ~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      ..| |-+...|.+.|++..-.|+|+++- ||...|.-|+.||++|+||++|++|.+..
T Consensus       237 ~iL-p~L~~ll~~~D~~Vl~Da~WAlsy-Lsdg~ne~iq~vi~~gvv~~LV~lL~~~~  292 (514)
T KOG0166|consen  237 PIL-PALLRLLHSTDEEVLTDACWALSY-LTDGSNEKIQMVIDAGVVPRLVDLLGHSS  292 (514)
T ss_pred             HHH-HHHHHHHhcCCHHHHHHHHHHHHH-HhcCChHHHHHHHHccchHHHHHHHcCCC
Confidence            356 888889999999999999999965 55678999999999999999999998653

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=94.37  E-value=0.099  Score=39.07  Aligned_cols=55  Identities=22%  Similarity=0.309  Sum_probs=45.1

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.++|+..+..|++.+..|.... .+....+++.|++|.|+++|...+
T Consensus        50 ~i-~~l~~~l~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~l~~l~~~l~~~~  104 (120)
T cd00020          50 GL-PALVQLLKSEDEEVVKAALWALRNLAAGP-EDNKLIVLEAGGVPKLVNLLDSSN  104 (120)
T ss_pred             Ch-HHHHHHHhCCCHHHHHHHHHHHHHHccCc-HHHHHHHHHCCChHHHHHHHhcCC
Confidence            45 77888889999999999999999998643 345566788999999999998643

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=94.09  E-value=0.079  Score=52.66  Aligned_cols=56  Identities=27%  Similarity=0.322  Sum_probs=49.0

Q ss_pred             hccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        211 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       211 ~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      ..| |-+..-|+|-|++....|+|++ -.||--.|--|+.||+.|+-+||||+|++.+
T Consensus       243 qal-piL~KLiys~D~evlvDA~WAi-SYlsDg~~E~i~avld~g~~~RLvElLs~~s  298 (526)
T COG5064         243 QAL-PILAKLIYSRDPEVLVDACWAI-SYLSDGPNEKIQAVLDVGIPGRLVELLSHES  298 (526)
T ss_pred             HHH-HHHHHHHhhcCHHHHHHHHHHH-HHhccCcHHHHHHHHhcCCcHHHHHHhcCcc
Confidence            456 7778889999999999999999 4667778899999999999999999998753

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=92.91  E-value=0.16  Score=59.00  Aligned_cols=53  Identities=15%  Similarity=0.253  Sum_probs=44.4

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHH-HhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSAR-KLLSSDKNPPIEALIHSGILPVLVECLERS  267 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~R-KLLS~EkNPPIDeVIesGVVPrfVeFLs~~  267 (269)
                      .+ +.++..+.++++..|.+|++.+- .+++.+.  +++.||++|+||.||+||.++
T Consensus       190 aV-p~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee--~~~aVIeaGaVP~LV~LL~sg  243 (2102)
T PLN03200        190 GV-DILVKLLSSGNSDAQANAASLLARLMMAFES--SISKVLDAGAVKQLLKLLGQG  243 (2102)
T ss_pred             CH-HHHHHHHcCCCHHHHHHHHHHHHHHHcCChH--HHHHHHHCCCHHHHHHHHccC
Confidence            56 88999999999999999999764 4444332  899999999999999999753

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=92.67  E-value=0.091  Score=34.71  Aligned_cols=22  Identities=32%  Similarity=0.560  Sum_probs=19.1

Q ss_pred             CHHHHHhcCchHHHHhhcccCC
Q psy12599        247 PIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       247 PIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .++.|+++|+||.||.+|.+.+
T Consensus         4 ~~~~i~~~g~i~~Lv~ll~~~~   25 (41)
T PF00514_consen    4 NKQAIVEAGGIPPLVQLLKSPD   25 (41)
T ss_dssp             HHHHHHHTTHHHHHHHHTTSSS
T ss_pred             HHHHHHHcccHHHHHHHHcCCC
Confidence            4678999999999999998654

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=88.04  E-value=1.4  Score=32.78  Aligned_cols=53  Identities=26%  Similarity=0.344  Sum_probs=42.8

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      +.+++.+.++++.....|+..+..+-+. ..+....+++.|++|.|+++|..++
T Consensus        10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~~i~~l~~~l~~~~   62 (120)
T cd00020          10 PALVSLLSSSDENVQREAAWALSNLSAG-NNDNIQAVVEAGGLPALVQLLKSED   62 (120)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHhcC-CHHHHHHHHHCCChHHHHHHHhCCC
Confidence            6778888999999999999999997754 2445556778899999999998643

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=82.67  E-value=1.7  Score=50.85  Aligned_cols=55  Identities=22%  Similarity=0.224  Sum_probs=45.8

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +-++..|.+++...|..|++.++.|- ....--.+.|+++|.||.||++|.+.+
T Consensus       447 gI-p~LV~LL~s~s~~iQ~~A~~~L~nLa-~~ndenr~aIieaGaIP~LV~LL~s~~  501 (2102)
T PLN03200        447 GV-QLLISLLGLSSEQQQEYAVALLAILT-DEVDESKWAITAAGGIPPLVQLLETGS  501 (2102)
T ss_pred             cH-HHHHHHHcCCCHHHHHHHHHHHHHHH-cCCHHHHHHHHHCCCHHHHHHHHcCCC
Confidence            57 88999999999999999999998774 443345788999999999999997643

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	269
3tpo_A	529	Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP		1e-14
1wa5_B	530	Crystal Structure Of The Exportin Cse1p Complexed W		1e-10
4b8j_A	528	Rimp_alpha1a Length = 528		2e-10
1ial_A	453	Importin Alpha, Mouse Length = 453		1e-06
2ynr_A	461	Mimp_alphadibb_b54nls Length = 461		2e-06
4htv_A	509	Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex		2e-06
3ukw_B	510	Mouse Importin Alpha: Bimax1 Peptide Complex Length		2e-06
3fex_C	467	Crystal Structure Of The Cbc-Importin Alpha Complex		3e-06
4ba3_A	496	Mimp_alphadibb_a89nls Length = 496		3e-06
3rz9_A	510	Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt		3e-06
1q1s_C	466	Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid		4e-06
1ejl_I	460	Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti		4e-06
3ve6_A	426	Crystal Structure Analysis Of Venezuelan Equine Enc		5e-06
1y2a_C	428	Structure Of Mammalian Importin Bound To The Non-Cl		5e-06
3l3q_A	427	Mouse Importin Alpha-Peptm Nls Peptide Complex Leng		5e-06
3btr_C	427	Ar-Nls:importin-Alpha Complex Length = 427		5e-06
2c1m_A	424	Nup50:importin-Alpha Complex Length = 424		5e-06
3tpm_A	422	Crystal Structure Of Mal Rpel Domain In Complex Wit		6e-06
2yns_A	490	Rimp_alpha_b54nls Length = 490		6e-06

>pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529

Iteration: 1
 Score = 76.3 bits (186), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 5/107 (4%)
Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAA 221
           EMRRRR EV VELRK K++E + KRRNV      A S  +++      VN  +  +V+  
Sbjct: 26  EMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGI 85
Query: 222 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
             +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 86  NSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 132

>pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530

Iteration: 1
 Score = 63.2 bits (152), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 13/110 (11%)
Query: 167 EMRRRRNEVTVELRKNKREETLQKRRN-VPLADSTDEDDIEKMAQVNLDMLVVEAARKDN 225
           E+RRRR+   VELRK KR+E L KRRN +P  D  D D+ E  + V+ D       +++ 
Sbjct: 31  ELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDE-EDESSVSADQQFYSQLQQEL 89
Query: 226 PEL-----------QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECL 264
           P++           QL A    R++LS +  PPI+ +I +G++P LVE +
Sbjct: 90  PQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFM 139

>pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/112 (37%), Positives = 63/112 (56%), Gaps = 15/112 (13%)
Query: 166 KEMRRRRNEVTVELRKNKREETLQKRRN--------VPLADSTDEDD-IEKMAQVNLDML 216
           +E RRRR +  VE+RK++REE+L K+R         VP + +T  D  +E +  +     
Sbjct: 25  EEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAM----- 79
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
            +     D+  LQL A    RKLLS +++PPIE +I SG++P  V+ L R D
Sbjct: 80  -IGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED 130

>pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453

Iteration: 1
 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/89 (37%), Positives = 51/89 (57%), Gaps = 5/89 (5%)
Query: 185 EETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAARKDNPELQLLAVQSARKL 239
           +E + KRRNV      A S  +++      VN  +  +V+    +N E QL A Q+ARKL
Sbjct: 1   DEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGINSNNLESQLQATQAARKL 60
Query: 240 LSSDKNPPIEALIHSGILPVLVECLERSD 268
           LS +K PPI+ +I +G++P  V  L ++D
Sbjct: 61  LSREKQPPIDNIIRAGLIPKFVSFLGKTD 89

>pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 7/76 (9%)
Query: 199 STDEDDIEKMAQVNLDML------VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI 252
            TD+DD + MA +    +      +V+    +N E QL A Q+ARKLLS +K PPI+ +I
Sbjct: 23  GTDDDD-KAMADIGSGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNII 81
Query: 253 HSGILPVLVECLERSD 268
            +G++P  V  L ++D
Sbjct: 82  RAGLIPKFVSFLGKTD 97

>pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 199 STDEDDI------EKMAQVNLDML-VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEAL 251
            TD+DD+           VN  +  +V+    +N E QL A Q+ARKLLS +K PPI+ +
Sbjct: 37  GTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI 96
Query: 252 IHSGILPVLVECLERSD 268
           I +G++P  V  L ++D
Sbjct: 97  IRAGLIPKFVSFLGKTD 113

>pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510

Iteration: 1
 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 199 STDEDDI------EKMAQVNLDML-VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEAL 251
            TD+DD+           VN  +  +V+    +N E QL A Q+ARKLLS +K PPI+ +
Sbjct: 37  GTDDDDLAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNI 96
Query: 252 IHSGILPVLVECLERSD 268
           I +G++P  V  L ++D
Sbjct: 97  IRAGLIPKFVSFLGKTD 113

>pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/52 (46%), Positives = 34/52 (65%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+     N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L R+D
Sbjct: 13  IVKGINSSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTD 64

>pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496

Iteration: 1
 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 48  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 99

>pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510

Iteration: 1
 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 62  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 113

>pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69

>pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460

Iteration: 1
 Score = 48.1 bits (113), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 63

>pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 62

>pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 63

>pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 11  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 62

>pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 12  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 63

>pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424

Iteration: 1
 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 58

>pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 23/52 (44%), Positives = 35/52 (67%)
Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 7   IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 58

>pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
Query: 199 STDEDDIEKMAQVNLDM-LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGIL 257
            TD+DD + MA +   +  ++     D+  LQL A    RKLLS +++PPIE +I SG++
Sbjct: 23  GTDDDD-KAMADIGSSLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVV 81
Query: 258 PVLVECLERSD 268
           P  V+ L R D
Sbjct: 82  PRFVQFLTRED 92

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	269
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-25
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-22
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-09
1qgk_B	44	Protein (importin alpha-2 subunit); transport rece	1e-07
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	4e-07

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  102 bits (256), Expect = 5e-25
 Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 11/113 (9%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLV--------- 217
           E+RRRR+   VELRK KR+E L KRRN        + D E  + V+ D            
Sbjct: 31  ELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELP 90

Query: 218 --VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
              +    D+ + QL A    R++LS +  PPI+ +I +G++P LVE +  + 
Sbjct: 91  QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 143

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 95.5 bits (237), Expect = 2e-22
 Identities = 30/105 (28%), Positives = 45/105 (42%), Gaps = 3/105 (2%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLV---VEAARK 223
                R     E    K E       ++   D           Q  ++  V   V+    
Sbjct: 9   SGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINS 68

Query: 224 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 69  NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 113

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 196 LADSTDEDDIEKMAQVNLDM-LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI-H 253
           +     + +  +MA   +    ++E     +PE QL A Q  RKLLS + NPPI+ +I  
Sbjct: 3   MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62

Query: 254 SGILPVLVECLERSD 268
            G++   VE L+R +
Sbjct: 63  PGVVARFVEFLKRKE 77

>1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44

 Score = 46.3 bits (110), Expect = 1e-07
 Identities = 19/28 (67%), Positives = 23/28 (82%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNV 194
           EMRRRR EV VELRK K+++ + KRRNV
Sbjct: 16  EMRRRRIEVNVELRKAKKDDQMLKRRNV 43

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 48.8 bits (117), Expect = 4e-07
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 218 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
            +    D+ + QL A +   ++LS D N  I+A+I +G LP LV+ L   +
Sbjct: 18  TQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN 67

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	269
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.87
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.65
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.56
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.51
3nmz_A	458	APC variant protein; protein-protein complex, arma	97.63
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	97.59
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	97.35
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	96.87
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	95.95
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	95.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	94.91
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	94.69
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	94.28
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	93.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	93.53
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	93.22
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	92.79
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	92.71
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	92.61
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	92.57
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	92.19
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	91.33
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	91.21
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	91.18
3nmz_A	458	APC variant protein; protein-protein complex, arma	90.95
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	89.75
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	89.73
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	89.32
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	88.86
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	88.27
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	88.12
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	86.39
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	85.32
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	84.88

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.87  E-value=5.8e-23  Score=193.03  Aligned_cols=104  Identities=41%  Similarity=0.601  Sum_probs=65.5

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCCCch------hHHHhhhhccHHHHHHHHhCCChHHHHHHHHHHH
Q psy12599        164 VDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDED------DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSAR  237 (269)
Q Consensus       164 ~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~d~~------~~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~R  237 (269)
                      +.+++||||+|.+|||||+||||+|+||||+.........      .........+ ++|+++++|+|++.|++|++.||
T Consensus        23 ~~~e~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~lv~~l~s~d~~~q~~a~~~~r  101 (529)
T 3tpo_A           23 DSTEMRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSV-EDIVKGINSNNLESQLQATQAAR  101 (529)
T ss_dssp             ---------------------CCSCSCCCCCC---------------CGGGSSCCH-HHHHHHHTSSCHHHHHHHHHHHH
T ss_pred             ChHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHH-HHHHHHhcCCCHHHHHHHHHHHH
Confidence            4689999999999999999999999999998532211110      0111123568 99999999999999999999999


Q ss_pred             HhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        238 KLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       238 KLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      ||||.++||||+.||++|+||+||+||.+++
T Consensus       102 klLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~  132 (529)
T 3tpo_A          102 KLLSREKQPPIDNIIRAGLIPKFVSFLGKTD  132 (529)
T ss_dssp             HHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT
T ss_pred             HHHcCCCCchHHHHHHCCCHHHHHHHHcCCC
Confidence            9999999999999999999999999998654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.65  E-value=4.5e-17  Score=150.22  Aligned_cols=105  Identities=37%  Similarity=0.519  Sum_probs=62.0

Q ss_pred             hcHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCCC-chh---HHHhhhhccHHHHHHHHhCCChHHHHHHHHHHHH
Q psy12599        163 EVDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTD-EDD---IEKMAQVNLDMLVVEAARKDNPELQLLAVQSARK  238 (269)
Q Consensus       163 n~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~d-~~~---~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~RK  238 (269)
                      .+.+++||||++.+|||||+||||+|+||||+....+.. +..   ........+ +.++..+.|+|+..++.|++.+++
T Consensus        22 ~~~~~~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l-~~lv~~L~s~~~~~~~~A~~~L~~  100 (528)
T 4b8j_A           22 VDAEEGRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESL-PAMIGGVYSDDNNLQLEATTQFRK  100 (528)
T ss_dssp             -----CCCCC-----------------CCCC----------------------CH-HHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CChHHHHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHH-HHHHHHHcCCCHHHHHHHHHHHHH
Confidence            467899999999999999999999999999974321110 000   011123568 999999999999999999999999


Q ss_pred             hhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        239 LLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       239 LLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      ++|.+.+||++.++.+|+||.||+||...+
T Consensus       101 l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~  130 (528)
T 4b8j_A          101 LLSIERSPPIEEVIQSGVVPRFVQFLTRED  130 (528)
T ss_dssp             HHTCSSSCCHHHHHHTTCHHHHHHHHTCTT
T ss_pred             HhcCCCCchHHHHHHCCCHHHHHHHhCCCC
Confidence            999999999999999999999999998654

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.56  E-value=2.3e-15  Score=141.49  Aligned_cols=96  Identities=28%  Similarity=0.376  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHhhhHHHHhhhcCCCCCCCCCch----hHHHhhhhccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCC
Q psy12599        172 RNEVTVELRKNKREETLQKRRNVPLADSTDED----DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP  247 (269)
Q Consensus       172 REE~~VELRKqKRDEqL~KRRNi~~~~~~d~~----~~~~~~~~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPP  247 (269)
                      |..-.+++|+++.+.+.+++++....+.+...    ..++...+++ ++||++|+|+|++.|++||++||||||.|+|||
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~v~~l~s~d~~~q~~a~~~~rklls~e~~pp   92 (510)
T 3ul1_B           14 RGSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSV-EDIVKGINSNNLESQLQATQAARKLLSREKQPP   92 (510)
T ss_dssp             ---------------------------------------CCSSCCH-HHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCC
T ss_pred             CCcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhH-HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCch
Confidence            44557899999999999988886433222111    1122234678 999999999999999999999999999999999


Q ss_pred             HHHHHhcCchHHHHhhcccCC
Q psy12599        248 IEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       248 IDeVIesGVVPrfVeFLs~~D  268 (269)
                      |+.||++|+||+||+||++++
T Consensus        93 i~~ii~~G~ip~LV~lL~~~~  113 (510)
T 3ul1_B           93 IDNIIRAGLIPKFVSFLGKTD  113 (510)
T ss_dssp             HHHHHHTTHHHHHHHHTTCTT
T ss_pred             HHHHHHCCCHHHHHHHHCCCC
Confidence            999999999999999998654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.51  E-value=7.3e-16  Score=142.95  Aligned_cols=103  Identities=39%  Similarity=0.607  Sum_probs=80.3

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCC----CCCCchh----HHH----hhhhccHHHHHHHHhCCChHHHHH
Q psy12599        164 VDKEMRRRRNEVTVELRKNKREETLQKRRNVPLA----DSTDEDD----IEK----MAQVNLDMLVVEAARKDNPELQLL  231 (269)
Q Consensus       164 ~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~----~~~d~~~----~~~----~~~~~L~~eIV~~I~S~D~~~QLe  231 (269)
                      +++++||||++.+|+|||+|||++|+||||+...    +..++..    ...    .....+ +.++..|.|+|+..++.
T Consensus        28 ~~~~~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~lv~~L~s~~~~~~~~  106 (530)
T 1wa5_B           28 SADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQEL-PQMTQQLNSDDMQEQLS  106 (530)
T ss_dssp             ---CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCH-HHHHHHHSCSSHHHHHH
T ss_pred             ChHHHHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHH-HHHHHHHcCCCHHHHHH
Confidence            4589999999999999999999999999998531    1111110    001    122467 99999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599        232 AVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS  267 (269)
Q Consensus       232 Atq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~  267 (269)
                      |++.+|+++|.+.+||++.++++|+||.||++|...
T Consensus       107 A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~  142 (530)
T 1wa5_B          107 ATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN  142 (530)
T ss_dssp             HHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT
T ss_pred             HHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC
Confidence            999999999998899999999999999999999864

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=97.63  E-value=1.9e-05  Score=75.60  Aligned_cols=51  Identities=20%  Similarity=0.331  Sum_probs=35.0

Q ss_pred             hccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCH-HHHHhcCchHHHHhhcccCC
Q psy12599        211 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERSD  268 (269)
Q Consensus       211 ~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPI-DeVIesGVVPrfVeFLs~~D  268 (269)
                      ..+ +.++.++.|+|++      ..+|+|||.+.|||| ..+|++|+||+||+||..++
T Consensus        32 ~~~-~~l~~~~~~~~~~------~~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~   83 (458)
T 3nmz_A           32 EMV-YSLLSMLGTHDKD------DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGND   83 (458)
T ss_dssp             --------------CCH------HHHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTT
T ss_pred             HHH-HHHHHHhcCCCHH------HHHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhccc
Confidence            456 8889999999999      399999999999999 89999999999999999653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=97.59  E-value=9.5e-05  Score=65.25  Aligned_cols=55  Identities=40%  Similarity=0.569  Sum_probs=51.3

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhc-CchHHHHhhcccC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLERS  267 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIes-GVVPrfVeFLs~~  267 (269)
                      .+ +.+++.+.|+|+..+..|+..+|++++.+.+||++.+|.. |+||.|+++|..+
T Consensus        21 ~l-~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~   76 (450)
T 2jdq_A           21 IT-SDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK   76 (450)
T ss_dssp             -C-HHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT
T ss_pred             cH-HHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC
Confidence            37 8899999999999999999999999998889999999999 9999999999865

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=97.35  E-value=7.1e-05  Score=61.60  Aligned_cols=55  Identities=31%  Similarity=0.442  Sum_probs=50.3

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..|.|+|++.|..|++.+++++|. .+++++.+++.|+||.|+++|...+
T Consensus        13 ~~-~~~~~~L~s~~~~~~~~a~~~L~~~l~~-~~~~~~~~~~~g~i~~L~~lL~~~~   67 (252)
T 4db8_A           13 EL-PQMTQQLNSDDMQEQLSATRKFSQILSD-GNEQIQAVIDAGALPALVQLLSSPN   67 (252)
T ss_dssp             SH-HHHHHHHHSSCSSHHHHHHHHHHHHHHH-HHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred             hH-HHHHHHHcCCCHHHHHHHHHHHHHHHcC-CCchHHHHHHcCcHHHHHHHHcCCC
Confidence            45 8899999999999999999999999998 6788899999999999999998654

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=96.87  E-value=0.00033  Score=61.78  Aligned_cols=56  Identities=13%  Similarity=0.011  Sum_probs=46.4

Q ss_pred             hccHHHHHHHHhCCCh--HHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        211 VNLDMLVVEAARKDNP--ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       211 ~~L~~eIV~~I~S~D~--~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      +.+ +.+|+.|.|+|+  +.|..|+..++. |+...+++...|+++|.||.||++|++.+
T Consensus         8 ~~i-~~lV~lL~s~~~~~~~q~~Aa~~l~~-L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~   65 (233)
T 3tt9_A            8 MTL-ERAVSMLEADHMLPSRISAAATFIQH-ECFQKSEARKRVNQLRGILKLLQLLKVQN   65 (233)
T ss_dssp             CCH-HHHHHTCCSSCCCHHHHHHHHHHHHH-HHHHCHHHHHHHHHTTHHHHHHHGGGCCC
T ss_pred             ccH-HHHHHHhCCCCchHHHHHHHHHHHHH-HHcCCcHHHHHHHHcCCHHHHHHHHcCCC
Confidence            577 999999999999  888999988766 44455666778999999999999998653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=95.95  E-value=0.0053  Score=60.90  Aligned_cols=56  Identities=16%  Similarity=0.071  Sum_probs=48.4

Q ss_pred             hccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        211 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       211 ~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      ..+ +.+|..|.|+|+..|++|+..++.|.+ ...+....|+++|.||.||++|.+.+
T Consensus        48 ~~i-~~LV~~L~s~~~~~q~~Aa~~L~~La~-~~~~~k~~V~~~G~Ip~LV~LL~s~~  103 (584)
T 3l6x_A           48 PEL-PEVIAMLGFRLDAVKSNAAAYLQHLCY-RNDKVKTDVRKLKGIPVLVGLLDHPK  103 (584)
T ss_dssp             CCH-HHHHHHTTCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHGGGCSS
T ss_pred             ccH-HHHHHHHCCCCHHHHHHHHHHHHHHHc-CChHHHHHHHHcCCcHHHHHHHCCCC
Confidence            367 999999999999999999999887764 45677888999999999999998754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=95.91  E-value=0.0074  Score=56.06  Aligned_cols=51  Identities=18%  Similarity=0.148  Sum_probs=45.0

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHH-HHhcCchHHHHhhcc
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEA-LIHSGILPVLVECLE  265 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDe-VIesGVVPrfVeFLs  265 (269)
                      .+ |.++..+.|+++..|..|++.+|.|.+.  ||+... |+++|.||.||++|.
T Consensus        45 ~i-~~Lv~lL~s~~~~~~~~A~~aL~nLa~~--~~~~k~~i~~~G~i~~Lv~lL~   96 (457)
T 1xm9_A           45 GI-CKLVDLLRSPNQNVQQAAAGALRNLVFR--STTNKLETRRQNGIREAVSLLR   96 (457)
T ss_dssp             HH-HHHHHHTTSSCHHHHHHHHHHHHHHHSS--CHHHHHHHHHTTCHHHHHHHHT
T ss_pred             CH-HHHHHHHcCCCHHHHHHHHHHHHHHhcC--CHHHHHHHHHcCCHHHHHHHHh
Confidence            56 8899999999999999999999999873  667666 459999999999998

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=94.91  E-value=0.025  Score=45.12  Aligned_cols=53  Identities=25%  Similarity=0.350  Sum_probs=44.3

Q ss_pred             HHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        215 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       215 ~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      +-++..+.|+|+..+..|++.++.|.. ......+.+++.|+||.|+++|...+
T Consensus        15 ~~l~~LL~s~~~~v~~~a~~~L~~l~~-~~~~~~~~i~~~g~i~~L~~lL~~~~   67 (210)
T 4db6_A           15 PQMVQQLNSPDQQELQSALRKLSQIAS-GGNEQIQAVIDAGALPALVQLLSSPN   67 (210)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHT-SCHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHc-CCHHHHHHHHHcCCHHHHHHHHcCCC
Confidence            567777899999999999999999864 33556678999999999999998653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=94.69  E-value=0.033  Score=50.05  Aligned_cols=55  Identities=15%  Similarity=0.220  Sum_probs=47.5

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      -+ +-++..+.++|+..+..|++.+..|.+. .+--++.+++.|+||.||.+|...+
T Consensus       168 gi-~~L~~lL~~~d~~v~~~A~~aLs~L~~~-~~~~~~~vv~~g~i~~Lv~LL~~~d  222 (296)
T 1xqr_A          168 GF-SVLMRAMQQQVQKLKVKSAFLLQNLLVG-HPEHKGTLCSMGMVQQLVALVRTEH  222 (296)
T ss_dssp             HH-HHHHHHHHSSCHHHHHHHHHHHHHHHHH-CGGGHHHHHHTTHHHHHHHHHTSCC
T ss_pred             CH-HHHHHHHcCCCHHHHHHHHHHHHHHHhC-ChHHHHHHHHcCCHHHHHHHHcCCC
Confidence            46 7788889999999999999999999876 3446888999999999999998754

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=94.28  E-value=0.023  Score=56.31  Aligned_cols=54  Identities=17%  Similarity=0.194  Sum_probs=47.2

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhccc
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER  266 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~  266 (269)
                      .+ |.+|..|.|+++..|..|+++++.|.+......-..|+++|+||.||.+|.+
T Consensus        91 ~I-p~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s  144 (584)
T 3l6x_A           91 GI-PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRK  144 (584)
T ss_dssp             HH-HHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             Cc-HHHHHHHCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcC
Confidence            56 8899999999999999999999999875434566788999999999999985

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=93.89  E-value=0.035  Score=48.79  Aligned_cols=52  Identities=13%  Similarity=0.231  Sum_probs=44.0

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCC-CHHHHHhcCchHHHHhhccc
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNP-PIEALIHSGILPVLVECLER  266 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNP-PIDeVIesGVVPrfVeFLs~  266 (269)
                      .+ |.++..|.|+++..|..|++++|.|-+.  ++ --..|+++|.||.||++|.+
T Consensus        53 ~I-p~LV~lL~s~~~~vq~~Aa~aL~nLa~~--~~~nk~~I~~~GaI~~Lv~lL~~  105 (233)
T 3tt9_A           53 GI-LKLLQLLKVQNEDVQRAVCGALRNLVFE--DNDNKLEVAELNGVPRLLQVLKQ  105 (233)
T ss_dssp             HH-HHHHHGGGCCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHH
T ss_pred             CH-HHHHHHHcCCCHHHHHHHHHHHHHHHhC--CHHHHHHHHHcCCHHHHHHHHcc
Confidence            46 8899999999999999999999998753  33 24568899999999999973

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=93.53  E-value=0.083  Score=42.06  Aligned_cols=55  Identities=27%  Similarity=0.378  Sum_probs=44.9

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.++++..+..|++.+..|.... ..-.+.+++.|+||.|+.+|...+
T Consensus        55 ~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~  109 (210)
T 4db6_A           55 AL-PALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPN  109 (210)
T ss_dssp             HH-HHHHHHTTCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred             CH-HHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHcCCc
Confidence            45 78888999999999999999999987432 233467889999999999998654

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=93.22  E-value=0.053  Score=49.81  Aligned_cols=53  Identities=19%  Similarity=0.251  Sum_probs=43.4

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcc
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLE  265 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs  265 (269)
                      .+ |.++..|.|++++.|..|++.++.|-......-.+.|+++|+||.||++|.
T Consensus       128 aI-p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~  180 (354)
T 3nmw_A          128 CM-RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL  180 (354)
T ss_dssp             HH-HHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             cH-HHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHh
Confidence            37 889999999999999999999999865322234577889999999999864

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=92.79  E-value=0.11  Score=46.70  Aligned_cols=54  Identities=17%  Similarity=0.191  Sum_probs=45.8

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS  267 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~  267 (269)
                      .+ +.++..+.++++..+..|++.++.|.+... .....+++.|+||.|+++|...
T Consensus       102 ~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L~~ll~~~  155 (529)
T 1jdh_A          102 GI-PALVKMLGSPVDSVLFYAITTLHNLLLHQE-GAKMAVRLAGGLQKMVALLNKT  155 (529)
T ss_dssp             HH-HHHHHHTTCSCHHHHHHHHHHHHHHHHHCT-THHHHHHHHTHHHHHHHGGGCC
T ss_pred             CH-HHHHHHHcCCCHHHHHHHHHHHHHHhcCCc-chHHHHHHcCCHHHHHHHHhcC
Confidence            46 888999999999999999999999987542 3466778999999999999864

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=92.71  E-value=0.1  Score=48.95  Aligned_cols=56  Identities=23%  Similarity=0.234  Sum_probs=47.1

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.+++...+.+|++++..+.+....--+..+++.|+||.|+.+|...|
T Consensus       378 ~i-~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d  433 (529)
T 3tpo_A          378 LV-PFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  433 (529)
T ss_dssp             HH-HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             cH-HHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCC
Confidence            35 778888999999999999999999987544444667899999999999998765

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=92.61  E-value=0.12  Score=49.32  Aligned_cols=54  Identities=17%  Similarity=0.189  Sum_probs=46.9

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS  267 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~  267 (269)
                      .+ +.++..+.++++..+..|++.++.|.+.. .+....+++.|+||.||++|...
T Consensus        99 ~i-~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~  152 (644)
T 2z6h_A           99 GI-PALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKT  152 (644)
T ss_dssp             HH-HHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCC
T ss_pred             CH-HHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcC
Confidence            46 88899999999999999999999999864 55667788999999999999864

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=92.57  E-value=0.12  Score=47.94  Aligned_cols=53  Identities=9%  Similarity=0.201  Sum_probs=47.1

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ |-++..+.+++...+.+|++.++.|-.   ++.+..+|..|+||.||++|...+
T Consensus       332 ~l-~~Lv~LL~~~~~~v~~~A~~aL~nls~---~~~~~~~i~~~~i~~Lv~lL~~~~  384 (457)
T 1xm9_A          332 GL-PQIARLLQSGNSDVVRSGASLLSNMSR---HPLLHRVMGNQVFPEVTRLLTSHT  384 (457)
T ss_dssp             CH-HHHHHHTTCSCHHHHHHHHHHHHHHHT---SGGGHHHHHHHTHHHHHHTTTSCC
T ss_pred             Cc-hHHHHHHhCCCHhHHHHHHHHHHHHhc---CHHHHHHHHHhhhHHHHHhccCCC
Confidence            46 888999999999999999999999864   678999999999999999998653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=92.19  E-value=0.13  Score=48.16  Aligned_cols=56  Identities=23%  Similarity=0.224  Sum_probs=47.8

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.+.+...+.+|++.+..+.+.....-+..+++.|+||.|+.+|...|
T Consensus       359 ~i-~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d  414 (510)
T 3ul1_B          359 LV-PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  414 (510)
T ss_dssp             HH-HHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSC
T ss_pred             CH-HHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC
Confidence            35 778888999999999999999999998654445677899999999999998765

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=91.33  E-value=0.23  Score=40.50  Aligned_cols=55  Identities=27%  Similarity=0.378  Sum_probs=44.7

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.++++..+..|++.+..|.+.. ..-.+.+++.|+||.|+++|...+
T Consensus       139 ~i-~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~ll~~~~  193 (252)
T 4db8_A          139 AL-PALVQLLSSPNEQILQEALWALSNIASGG-NEQIQAVIDAGALPALVQLLSSPN  193 (252)
T ss_dssp             HH-HHHHHGGGCSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHGGGCSS
T ss_pred             CH-HHHHHHHhCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHCCCHHHHHHHHCCCC
Confidence            46 78888899999999999999999988542 233456788999999999998653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=91.21  E-value=0.21  Score=43.86  Aligned_cols=55  Identities=20%  Similarity=0.285  Sum_probs=44.9

Q ss_pred             ccHHHHHHHHhCC-ChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~-D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.++ ++..+..|++.++.+.+.. ......+++.|+||.|+++|...+
T Consensus        65 ~i-~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~  120 (450)
T 2jdq_A           65 VV-ARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEF  120 (450)
T ss_dssp             HH-HHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred             cH-HHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCC
Confidence            45 8888899888 8999999999999998742 223456788999999999998653

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=91.18  E-value=0.15  Score=46.00  Aligned_cols=54  Identities=20%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             ccHHHHHHHHhC-CChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S-~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.+ +|+..+..|+..+++| |.... +...+++.|+||.|+++|..++
T Consensus        60 ~i-~~Lv~~L~~~~~~~~~~~a~~~L~~l-s~~~~-~~~~i~~~g~i~~L~~lL~~~~  114 (529)
T 1jdh_A           60 MV-SAIVRTMQNTNDVETARCTAGTLHNL-SHHRE-GLLAIFKSGGIPALVKMLGSPV  114 (529)
T ss_dssp             HH-HHHHHHHHHCCCHHHHHHHHHHHHHH-TTSHH-HHHHHHHTTHHHHHHHHTTCSC
T ss_pred             hH-HHHHHHHhcCCCHHHHHHHHHHHHHH-HcCch-hHHHHHHcCCHHHHHHHHcCCC
Confidence            35 777877864 5899999999999996 44433 7788999999999999998654

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=90.95  E-value=0.17  Score=48.39  Aligned_cols=54  Identities=19%  Similarity=0.249  Sum_probs=43.4

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhccc
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER  266 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~  266 (269)
                      .+ |.++..|.|++++.+..|++.++.|-....+.-.+.|+++|+||.||++|.+
T Consensus       244 aI-p~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~  297 (458)
T 3nmz_A          244 CM-RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE  297 (458)
T ss_dssp             HH-HHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTT
T ss_pred             cH-HHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhc
Confidence            37 8889999999999999999999997543222345778899999999998643

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=89.75  E-value=0.27  Score=45.06  Aligned_cols=55  Identities=15%  Similarity=0.145  Sum_probs=45.4

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..|.+.+...+.+|+..++.|-.. ...-++.++++|+||.||++|...+
T Consensus       264 ~i-~~Lv~lL~~~~~~v~~~A~~aL~nLa~~-~~~~~~~i~~~G~i~~Lv~LL~s~~  318 (354)
T 3nmw_A          264 CL-QTLLQHLKSHSLTIVSNACGTLWNLSAR-NPKDQEALWDMGAVSMLKNLIHSKH  318 (354)
T ss_dssp             HH-HHHHHHTTCSCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTHHHHHHTTTTCSS
T ss_pred             CH-HHHHHHHcCCChHHHHHHHHHHHHHhCC-CHHHHHHHHHCCCHHHHHHHHhCCC
Confidence            46 8888889999999999999999998743 2234677899999999999997643

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=89.73  E-value=0.34  Score=38.85  Aligned_cols=54  Identities=24%  Similarity=0.351  Sum_probs=44.7

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCC-HHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP-IEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPP-IDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.++++..+..|+..+..|...  ++. .+.+++.|++|.|+.+|...+
T Consensus       129 ~i-~~L~~~l~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~~~i~~L~~ll~~~~  183 (252)
T 4hxt_A          129 GV-EVLVKLLTSTDSEVQKEAARALANIASG--PDEAIKAIVDAGGVEVLVKLLTSTD  183 (252)
T ss_dssp             HH-HHHHHHTTCSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTHHHHHHHHTTCSC
T ss_pred             CH-HHHHHHHcCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCcCHHHHHHHHCCCC
Confidence            46 7888889999999999999999998753  333 367889999999999998653

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=89.32  E-value=0.36  Score=38.66  Aligned_cols=54  Identities=22%  Similarity=0.332  Sum_probs=44.6

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCC-HHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP-IEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPP-IDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.+.++..+..|+..+..|...  +|. ++.+++.|++|.|+++|...+
T Consensus       171 ~i-~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~~~  225 (252)
T 4hxt_A          171 GV-EVLVKLLTSTDSEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLTSTD  225 (252)
T ss_dssp             HH-HHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGGCSC
T ss_pred             CH-HHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHCCCc
Confidence            45 7788889999999999999999999863  333 456789999999999998654

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=88.86  E-value=0.34  Score=46.28  Aligned_cols=54  Identities=20%  Similarity=0.276  Sum_probs=44.0

Q ss_pred             ccHHHHHHHHhCC-ChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~-D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.++ ++..+..|+..++. ||.... +...+++.|+||.||++|...+
T Consensus        57 ~i-~~Lv~~L~~~~~~~~~~~A~~~L~~-Ls~~~~-~~~~i~~~g~i~~Lv~lL~~~~  111 (644)
T 2z6h_A           57 MV-SAIVRTMQNTNDVETARCTAGTLHN-LSHHRE-GLLAIFKSGGIPALVKMLGSPV  111 (644)
T ss_dssp             HH-HHHHHHHHSCCCHHHHHHHHHHHHH-HTTSHH-HHHHHHTTTHHHHHHHHTTCSS
T ss_pred             hH-HHHHHHHhcCCCHHHHHHHHHHHHH-HhcChh-hHHHHHHcCCHHHHHHHHhCCC
Confidence            35 7788888764 89999999999995 555534 7888999999999999998654

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=88.27  E-value=0.47  Score=43.49  Aligned_cols=55  Identities=25%  Similarity=0.290  Sum_probs=45.6

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.++|+..+..|++.+..|... .+.-++.+++.|+||.||.+|...+
T Consensus       245 ~l-~~L~~lL~~~~~~v~~~a~~aL~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~  299 (528)
T 4b8j_A          245 AL-PALARLIHSNDEEVLTDACWALSYLSDG-TNDKIQAVIEAGVCPRLVELLLHPS  299 (528)
T ss_dssp             HH-HHHHHHTTCCCHHHHHHHHHHHHHHTSS-CHHHHHHHHHTTCHHHHHHHTTCSC
T ss_pred             HH-HHHHHHHCCCCHHHHHHHHHHHHHHHcC-CHHHHHHHHHcCHHHHHHHHHcCCC
Confidence            45 7788888999999999999999998743 3445678899999999999998653

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=88.12  E-value=0.29  Score=48.73  Aligned_cols=54  Identities=20%  Similarity=0.281  Sum_probs=43.5

Q ss_pred             ccHHHHHHHHhC-CChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S-~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.+ .|+..+..|+..++. ||....+ ...+++.|+||.||++|...+
T Consensus       193 ~i-~~Lv~~L~~~~d~~vr~~Aa~aL~~-Ls~~~~~-~~~i~~~g~I~~Lv~lL~~~~  247 (780)
T 2z6g_A          193 MV-SAIVRTMQNTNDVETARCTSGTLHN-LSHHREG-LLAIFKSGGIPALVNMLGSPV  247 (780)
T ss_dssp             HH-HHHHHHHHHCCCHHHHHHHHHHHHH-HHTSHHH-HHHHHHTTHHHHHHHHTTCSC
T ss_pred             hH-HHHHHHHcCCCCHHHHHHHHHHHHH-HhCCchh-HHHHHHcCCHHHHHHHHcCCC
Confidence            35 777878864 499999999999999 5555333 888999999999999998653

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=86.39  E-value=0.63  Score=42.90  Aligned_cols=56  Identities=18%  Similarity=0.112  Sum_probs=45.7

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCC--CCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKN--PPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkN--PPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.+.++..+..|++.+..|.+....  .-+..+++.|+||.|+.+|...+
T Consensus       384 ~l-~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~~  441 (530)
T 1wa5_B          384 LI-PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD  441 (530)
T ss_dssp             CH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC
T ss_pred             CH-HHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCCC
Confidence            45 7788888889999999999999999875322  34677889999999999997643

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=85.32  E-value=0.62  Score=48.03  Aligned_cols=53  Identities=9%  Similarity=0.055  Sum_probs=45.9

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS  267 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~  267 (269)
                      .+ |-++..+.|+++..|.+|++.+..|-+.  ..-.+.|+++|+||.||.+|...
T Consensus       496 aV-p~LV~LL~s~s~~vqe~Aa~aL~NLA~d--~~~r~~Vv~~Gaip~Lv~LL~s~  548 (810)
T 3now_A          496 IT-TALCALAKTESHNSQELIARVLNAVCGL--KELRGKVVQEGGVKALLRMALEG  548 (810)
T ss_dssp             HH-HHHHHHHTCCCHHHHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHSS
T ss_pred             CH-HHHHHHHcCCCHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHccC
Confidence            46 8889999999999999999999999642  34688899999999999999754

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=84.88  E-value=0.64  Score=41.62  Aligned_cols=55  Identities=11%  Similarity=0.193  Sum_probs=43.2

Q ss_pred             ccHHHHHHHHhCC-ChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~-D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.++ ++..+-.|++++..|.. ...|.++.++++|+||.|+.+|...+
T Consensus       125 ~l-~~Ll~LL~~~~~~~v~~~A~~ALsnl~~-~~~~~~~~~~~~ggi~~L~~lL~~~d  180 (296)
T 1xqr_A          125 AL-RKLLRLLDRDACDTVRVKALFAISCLVR-EQEAGLLQFLRLDGFSVLMRAMQQQV  180 (296)
T ss_dssp             HH-HHHHHHHHHCSCHHHHHHHHHHHHHHHT-TCHHHHHHHHHTTHHHHHHHHHHSSC
T ss_pred             CH-HHHHHHHccCCCHHHHHHHHHHHHHHHc-CCcHHHHHHHHCCCHHHHHHHHcCCC
Confidence            56 7788888754 78889999999998774 22344678999999999999998654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	269
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	9e-25
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-13
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	9e-06

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  100 bits (249), Expect = 9e-25
 Identities = 38/113 (33%), Positives = 58/113 (51%), Gaps = 11/113 (9%)

Query: 167 EMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML---------- 216
           E+RRRR+   VELRK KR+E L KRRN        + D E  + V+ D            
Sbjct: 20  ELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELP 79

Query: 217 -VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
            + +    D+ + QL A    R++LS +  PPI+ +I +G++P LVE +  + 
Sbjct: 80  QMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ 132

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 67.9 bits (164), Expect = 1e-13
 Identities = 23/52 (44%), Positives = 35/52 (67%)

Query: 217 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
           +V+    +N E QL A Q+ARKLLS +K PPI+ +I +G++P  V  L ++D
Sbjct: 18  IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD 69

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.1 bits (102), Expect = 9e-06
 Identities = 17/106 (16%), Positives = 36/106 (33%), Gaps = 4/106 (3%)

Query: 165 DKEMRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVN--LDMLVVEAAR 222
           D E+  R      +L  ++ +  + K   +    S  E     + +    +  +V     
Sbjct: 11  DAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN 70

Query: 223 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD 268
            ++ E       +   L    +   + A+  SG +P LV+ L    
Sbjct: 71  TNDVETARCTAGTLHNLSHHREG--LLAIFKSGGIPALVKMLGSPV 114

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	269
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.65
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	98.64
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	91.55
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	91.24
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	88.36
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	87.14
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	83.94

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.65  E-value=2.6e-18  Score=153.36  Aligned_cols=103  Identities=37%  Similarity=0.555  Sum_probs=80.5

Q ss_pred             cHHHHHHHHHHHHHHHHHhhhHHHHhhhcCCCCCCCC-Cch-------h----HHHhhhhccHHHHHHHHhCCChHHHHH
Q psy12599        164 VDKEMRRRRNEVTVELRKNKREETLQKRRNVPLADST-DED-------D----IEKMAQVNLDMLVVEAARKDNPELQLL  231 (269)
Q Consensus       164 ~~eelRRRREE~~VELRKqKRDEqL~KRRNi~~~~~~-d~~-------~----~~~~~~~~L~~eIV~~I~S~D~~~QLe  231 (269)
                      +++++||||++..|||||+|||+.|.|||++...... +..       .    ........+ +++++.++|+|+..|+.
T Consensus        17 ~~~e~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~s~~~~~~~~   95 (503)
T d1wa5b_          17 SADELRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQEL-PQMTQQLNSDDMQEQLS   95 (503)
T ss_dssp             ---CCCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCH-HHHHHHHSCSSHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHH-HHHHHHhcCCCHHHHHH
Confidence            6789999999999999999999999999986422111 000       0    001112568 99999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599        232 AVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS  267 (269)
Q Consensus       232 Atq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~  267 (269)
                      |+..+|++||.+.+|||+.+|++|+||.||.+|+.+
T Consensus        96 a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~  131 (503)
T d1wa5b_          96 ATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN  131 (503)
T ss_dssp             HHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT
T ss_pred             HHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCC
Confidence            999999999999999999999999999999999854

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=1.4e-08  Score=86.27  Aligned_cols=57  Identities=39%  Similarity=0.623  Sum_probs=53.9

Q ss_pred             hhccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccC
Q psy12599        210 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS  267 (269)
Q Consensus       210 ~~~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~  267 (269)
                      .+.+ ++++..+.|+|++.|++|++.+|+++|...||||+.++++|+||.||++|++.
T Consensus        12 ~~~i-~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~   68 (434)
T d1q1sc_          12 NWSV-EDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT   68 (434)
T ss_dssp             SCCH-HHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCG
T ss_pred             hhhH-HHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccC
Confidence            4678 99999999999999999999999999999999999999999999999999754

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.55  E-value=0.1  Score=41.93  Aligned_cols=55  Identities=15%  Similarity=0.219  Sum_probs=45.5

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.|+++..+..|+..+..+++.. ..-...++++|+||.++.+|...+
T Consensus       145 gi-~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~v~~L~~lL~~~~  199 (264)
T d1xqra1         145 GF-SVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHKGTLCSMGMVQQLVALVRTEH  199 (264)
T ss_dssp             HH-HHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHTTHHHHHHHHHTSCC
T ss_pred             hh-hHHHHHHhcCchHHHHHHHHHHHHHHhcc-HHHHHHHHHhhhHHHHHHHHcCCC
Confidence            46 77888999999999999999999998642 233456789999999999998654

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.24  E-value=0.13  Score=40.87  Aligned_cols=53  Identities=19%  Similarity=0.182  Sum_probs=44.4

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCH-HHHHhcCchHHHHhhcccC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERS  267 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPI-DeVIesGVVPrfVeFLs~~  267 (269)
                      .+ |.++..+.+++++.+..|+..+++|..  .+++. ..+++.|.||.|+.+|.+.
T Consensus        45 ~i-~~Lv~lL~~~~~~v~~~a~~aL~~L~~--~~~~~~~~i~~~g~v~~li~~l~~~   98 (457)
T d1xm9a1          45 GI-CKLVDLLRSPNQNVQQAAAGALRNLVF--RSTTNKLETRRQNGIREAVSLLRRT   98 (457)
T ss_dssp             HH-HHHHHHTTSSCHHHHHHHHHHHHHHHS--SCHHHHHHHHHTTCHHHHHHHHTTC
T ss_pred             cH-HHHHHHHCCCCHHHHHHHHHHHHHHHc--CCHHHHHHHHHCCChHHHHHHHhcc
Confidence            46 889999999999999999999999973  45665 4567899999999998754

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.36  E-value=0.22  Score=40.95  Aligned_cols=56  Identities=23%  Similarity=0.224  Sum_probs=46.4

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCHHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPIDeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.+.++..+..|++.+..+.....+--+..+++.|++|.|+.+|...|
T Consensus       315 ~i-~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d  370 (434)
T d1q1sc_         315 LV-PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKD  370 (434)
T ss_dssp             CH-HHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSC
T ss_pred             hH-HHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCC
Confidence            45 778888999999999999999999887543334566889999999999998654

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.14  E-value=0.42  Score=40.81  Aligned_cols=56  Identities=20%  Similarity=0.172  Sum_probs=46.9

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCC--HHHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP--IEALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPP--IDeVIesGVVPrfVeFLs~~D  268 (269)
                      -+ +.++..+.++++..+.+|++.+..+++...+-+  +..+++.|+++.|+.+|...|
T Consensus       373 ~l-~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~~~d  430 (503)
T d1wa5b_         373 LI-PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD  430 (503)
T ss_dssp             CH-HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTCC
T ss_pred             cc-chhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhcCCC
Confidence            45 778888999999999999999999998654443  567889999999999998654

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.94  E-value=0.58  Score=40.04  Aligned_cols=54  Identities=17%  Similarity=0.199  Sum_probs=44.4

Q ss_pred             ccHHHHHHHHhCCChHHHHHHHHHHHHhhcCCCCCCH-HHHHhcCchHHHHhhcccCC
Q psy12599        212 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERSD  268 (269)
Q Consensus       212 ~L~~eIV~~I~S~D~~~QLeAtq~~RKLLS~EkNPPI-DeVIesGVVPrfVeFLs~~D  268 (269)
                      .+ +.++..+.++|+..+..|+..+..|...  ++.. ..+.+.|+||.||.+|++.+
T Consensus       102 ~i-~~Li~lL~~~~~~v~~~a~~aL~~l~~~--~~~~~~~~~~~g~i~~Lv~lL~~~~  156 (529)
T d1jdha_         102 GI-PALVKMLGSPVDSVLFYAITTLHNLLLH--QEGAKMAVRLAGGLQKMVALLNKTN  156 (529)
T ss_dssp             HH-HHHHHHTTCSCHHHHHHHHHHHHHHHHH--CTTHHHHHHHHTHHHHHHHGGGCCC
T ss_pred             CH-HHHHHHhCCCCHHHHHHHHHHHHHhhcc--cchhhhHHHhcCCchHHHHHHHccC
Confidence            46 8889899999999999999999998753  3434 45678999999999998654