Psyllid ID: psy12605
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 845 | 2.2.26 [Sep-21-2011] | |||||||
| O00505 | 521 | Importin subunit alpha-3 | yes | N/A | 0.486 | 0.788 | 0.659 | 1e-158 | |
| O35344 | 521 | Importin subunit alpha-3 | yes | N/A | 0.486 | 0.788 | 0.659 | 1e-158 | |
| O35343 | 521 | Importin subunit alpha-4 | no | N/A | 0.487 | 0.790 | 0.653 | 1e-156 | |
| O00629 | 521 | Importin subunit alpha-4 | no | N/A | 0.487 | 0.790 | 0.653 | 1e-155 | |
| Q19969 | 514 | Importin subunit alpha-3 | yes | N/A | 0.481 | 0.791 | 0.555 | 1e-128 | |
| P52293 | 529 | Importin subunit alpha-2 | no | N/A | 0.494 | 0.790 | 0.447 | 1e-100 | |
| P52170 | 522 | Importin subunit alpha-1 | N/A | N/A | 0.487 | 0.789 | 0.457 | 1e-99 | |
| P52292 | 529 | Importin subunit alpha-2 | no | N/A | 0.487 | 0.778 | 0.455 | 3e-99 | |
| P52171 | 523 | Importin subunit alpha-2 | N/A | N/A | 0.486 | 0.785 | 0.447 | 2e-96 | |
| C1JZ66 | 522 | Importin subunit alpha-8 | no | N/A | 0.466 | 0.754 | 0.446 | 2e-92 |
| >sp|O00505|IMA3_HUMAN Importin subunit alpha-3 OS=Homo sapiens GN=KPNA3 PE=1 SV=2 | Back alignment and function desciption |
|---|
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 294/446 (65%), Positives = 337/446 (75%), Gaps = 35/446 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 57
MRR RNEVTVELRKNKR+E L K+RNVP +S ++ D++ K V L+ +++ A D
Sbjct: 25 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 83
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D P+LQFEAAWALTNIA
Sbjct: 84 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIA 143
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTSAQTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV P
Sbjct: 144 SGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKP 203
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237
LLSFI P IPI+FLRNVTWVIVNLCRNKDPPP M T+ E+LPAL +LI+H D
Sbjct: 204 LLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTD-------- 255
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297
+ ILVDTVWALSYLTDGGN+QIQMVIDSGVVP L+PLLSH+EV
Sbjct: 256 -----------------INILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEV 298
Query: 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357
KVQTA+LRAVGNIVTGTDEQTQV+LNCD LSHFP LL+HPKEKI KEAVWFLSNITAGNQ
Sbjct: 299 KVQTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQ 358
Query: 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAV 416
QVQAVIDAGL+P II L K G Q EAAWA++N+ SG Q + +V +
Sbjct: 359 QQVQAVIDAGLIPMIIHQLAK-GDF----GTQKEAAWAISNLTISGRKDQVEYLVQQNVI 413
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNII 442
P F LL S V + + L NI+
Sbjct: 414 PPFCNLLSVKDSQVVQVVLDGLKNIL 439
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. Recognizes NLSs of influenza A virus nucleoprotein probably through ARM repeats 7-9. Homo sapiens (taxid: 9606) |
| >sp|O35344|IMA3_MOUSE Importin subunit alpha-3 OS=Mus musculus GN=Kpna3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 559 bits (1440), Expect = e-158, Method: Compositional matrix adjust.
Identities = 294/446 (65%), Positives = 337/446 (75%), Gaps = 35/446 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 57
MRR RNEVTVELRKNKR+E L K+RNVP +S ++ D++ K V L+ +++ A D
Sbjct: 25 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 83
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D P+LQFEAAWALTNIA
Sbjct: 84 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIA 143
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTSAQTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV P
Sbjct: 144 SGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKP 203
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237
LLSFI P IPI+FLRNVTWVIVNLCRNKDPPP M T+ E+LPAL +LI+H D
Sbjct: 204 LLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTD-------- 255
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297
+ ILVDTVWALSYLTDGGN+QIQMVIDSGVVP L+PLLSH+EV
Sbjct: 256 -----------------INILVDTVWALSYLTDGGNEQIQMVIDSGVVPFLVPLLSHQEV 298
Query: 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357
KVQTA+LRAVGNIVTGTDEQTQV+LNCD LSHFP LL+HPKEKI KEAVWFLSNITAGNQ
Sbjct: 299 KVQTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFLSNITAGNQ 358
Query: 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAV 416
QVQAVIDAGL+P II L K G Q EAAWA++N+ SG Q + +V +
Sbjct: 359 QQVQAVIDAGLIPMIIHQLAK-GDF----GTQKEAAWAISNLTISGRKDQVEYLVQQNVI 413
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNII 442
P F LL S V + + L NI+
Sbjct: 414 PPFCNLLSVKDSQVVQVVLDGLKNIL 439
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. Mus musculus (taxid: 10090) |
| >sp|O35343|IMA4_MOUSE Importin subunit alpha-4 OS=Mus musculus GN=Kpna4 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 551 bits (1421), Expect = e-156, Method: Compositional matrix adjust.
Identities = 291/445 (65%), Positives = 331/445 (74%), Gaps = 33/445 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 58
MRR+RNEV VELRKNKR+E L KRRNVP D ++ DI+ +V L +V+ A DN
Sbjct: 25 MRRQRNEVVVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQNTSLEAIVQNASSDN 84
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D P+LQFEAAWALTNIAS
Sbjct: 85 QGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIAS 144
Query: 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178
GTS QTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV PL
Sbjct: 145 GTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPL 204
Query: 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWL 238
LSFI P IPI+FLRNVTWV+VNLCR+KDPPP M TI E+LPAL +LIHH D
Sbjct: 205 LSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTD--------- 255
Query: 239 SIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVK 298
+ ILVDTVWALSYLTD GN+QIQMVIDSG+VP L+PLLSH+EVK
Sbjct: 256 ----------------VNILVDTVWALSYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVK 299
Query: 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA 358
VQTA+LRAVGNIVTGTDEQTQV+LNCDALSHFPALLTHPKEKI KEAVWFLSNITAGNQ
Sbjct: 300 VQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKINKEAVWFLSNITAGNQQ 359
Query: 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVP 417
QVQAVIDA L+P II L K G Q EAAWA++N+ SG Q ++ +P
Sbjct: 360 QVQAVIDANLVPMIIHLLDK-GDF----GTQKEAAWAISNLTISGRKDQVAYLIQQNVIP 414
Query: 418 LFLRLLMSPHSNVCEQAVWALGNII 442
F LL + V + + L NI+
Sbjct: 415 PFCNLLTVKDAQVVQVVLDGLSNIL 439
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mus musculus (taxid: 10090) |
| >sp|O00629|IMA4_HUMAN Importin subunit alpha-4 OS=Homo sapiens GN=KPNA4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 551 bits (1419), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/445 (65%), Positives = 331/445 (74%), Gaps = 33/445 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 58
MRR+RNEV VELRKNKR+E L KRRNVP D ++ DI+ +V L +V+ A DN
Sbjct: 25 MRRQRNEVVVELRKNKRDEHLLKRRNVPHEDICEDSDIDGDYRVQNTSLEAIVQNASSDN 84
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D P+LQFEAAWALTNIAS
Sbjct: 85 QGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIAS 144
Query: 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178
GTS QTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV PL
Sbjct: 145 GTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPL 204
Query: 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWL 238
LSFI P IPI+FLRNVTWV+VNLCR+KDPPP M TI E+LPAL +LIHH D
Sbjct: 205 LSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTD--------- 255
Query: 239 SIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVK 298
+ ILVDTVWALSYLTD GN+QIQMVIDSG+VP L+PLLSH+EVK
Sbjct: 256 ----------------VNILVDTVWALSYLTDAGNEQIQMVIDSGIVPHLVPLLSHQEVK 299
Query: 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA 358
VQTA+LRAVGNIVTGTDEQTQV+LNCDALSHFPALLTHPKEKI KEAVWFLSNITAGNQ
Sbjct: 300 VQTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKINKEAVWFLSNITAGNQQ 359
Query: 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVP 417
QVQAVIDA L+P II L K G Q EAAWA++N+ SG Q ++ +P
Sbjct: 360 QVQAVIDANLVPMIIHLLDK-GDF----GTQKEAAWAISNLTISGRKDQVAYLIQQNVIP 414
Query: 418 LFLRLLMSPHSNVCEQAVWALGNII 442
F LL + V + + L NI+
Sbjct: 415 PFCNLLTVKDAQVVQVVLDGLSNIL 439
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a non-classical NLS. In vitro, mediates the nuclear import of human cytomegalovirus UL84 by recognizing a nonclassical NLS. Homo sapiens (taxid: 9606) |
| >sp|Q19969|IMA3_CAEEL Importin subunit alpha-3 OS=Caenorhabditis elegans GN=ima-3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 458 bits (1179), Expect = e-128, Method: Compositional matrix adjust.
Identities = 249/448 (55%), Positives = 306/448 (68%), Gaps = 41/448 (9%)
Query: 2 RRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMA------QVNLDMLVVEAAR 55
+ +RNE V +RK+KREE + KRRN+ ++ EDD E NL L V AA+
Sbjct: 19 KEKRNEEVVSIRKDKREEAISKRRNI---NTQIEDDSETSTTPPGPFDANLLRLTVAAAQ 75
Query: 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTN 115
+P QL AVQ ARK+LS+D+NPPI+ LI SGILPVLV+CL +D PNLQFEAAWALTN
Sbjct: 76 SSDPAEQLTAVQQARKMLSTDRNPPIDDLIGSGILPVLVQCLSSTD-PNLQFEAAWALTN 134
Query: 116 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVV 175
IASGTS QTQ VV AGAVPLFL+LL + NVCEQ+VWALGNIIGDGP RDY + +G++
Sbjct: 135 IASGTSEQTQAVVNAGAVPLFLQLLSCGNLNVCEQSVWALGNIIGDGPHFRDYCLELGIL 194
Query: 176 PPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 235
PLL FI P+IPI FLRNVTWVIVNLCR KDP PS + + +LPAL++LIHH DT+
Sbjct: 195 QPLLQFINPEIPIGFLRNVTWVIVNLCRCKDPAPSPAVVRTILPALSLLIHHQDTN---- 250
Query: 236 LWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK 295
IL+DTVWALSYLTDGGN+ IQMVI++ VV L+PLL H
Sbjct: 251 ---------------------ILIDTVWALSYLTDGGNEHIQMVIEAQVVTHLVPLLGHV 289
Query: 296 EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG 355
+VKVQTA+LRAVGNIVTGTDEQTQ++L+ L P LL H KEKI KEAVWF+SNITAG
Sbjct: 290 DVKVQTAALRAVGNIVTGTDEQTQLVLDSGVLRFMPGLLAHYKEKINKEAVWFVSNITAG 349
Query: 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAG 414
NQ QVQ V DAG++P II L + G Q EAAWA++N+ SG Q +++V G
Sbjct: 350 NQQQVQDVFDAGIMPMIIHLLDR-GDFP----TQKEAAWAISNVTISGRPNQVEQMVKLG 404
Query: 415 AVPLFLRLLMSPHSNVCEQAVWALGNII 442
+ F +L S + + + + NI+
Sbjct: 405 VLRPFCAMLSCTDSQIIQVVLDGINNIL 432
|
Essential gene for embryonic and larval development. Required for oogenic development, ima-1 and ima-2 cannot functionally compensate for loss of ima-3. Caenorhabditis elegans (taxid: 6239) |
| >sp|P52293|IMA2_MOUSE Importin subunit alpha-2 OS=Mus musculus GN=Kpna2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 365 bits (938), Expect = e-100, Method: Compositional matrix adjust.
Identities = 205/458 (44%), Positives = 281/458 (61%), Gaps = 40/458 (8%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAAR 55
MRRRR EV VELRK K++E + KRRNV A S +++ VN + +V+
Sbjct: 27 MRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIVKGIN 86
Query: 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTN 115
+N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+AWALTN
Sbjct: 87 SNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTN 146
Query: 116 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVV 175
IASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD VI G +
Sbjct: 147 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAI 206
Query: 176 PPLLSFIK-PDIPI---SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231
PLL+ + PD+ +LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 207 DPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE 266
Query: 232 VSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291
V L D+ WA+SYLTDG N++I+MV+ GVVP L+ L
Sbjct: 267 V-------------------------LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKL 301
Query: 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351
L E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA W +SN
Sbjct: 302 LGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 361
Query: 352 ITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEV 410
ITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT Q +
Sbjct: 362 ITAGRQDQIQQVVNHGLVPFLVGVLSKADF-----KTQKEAAWAITNYTSGGTVEQIVYL 416
Query: 411 VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 448
V G + + LL + + + + + A+ NI +L
Sbjct: 417 VHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKL 454
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Mus musculus (taxid: 10090) |
| >sp|P52170|IMA1_XENLA Importin subunit alpha-1 OS=Xenopus laevis GN=kpna1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 364 bits (935), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 205/448 (45%), Positives = 271/448 (60%), Gaps = 36/448 (8%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADS---TDEDDIEKMAQVNLDML--VVEAAR 55
+RRRR EV+VELRK K++E + KRRNV L + + E + + QV L +V+
Sbjct: 24 LRRRRVEVSVELRKAKKDEQILKRRNVCLPEELILSPEKNAMQSVQVPPLSLEEIVQGMN 83
Query: 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTN 115
+PE +L Q+ARK+LS ++NPP+ +I +G++P LVE L R D LQFEAAWALTN
Sbjct: 84 SGDPENELRCTQAARKMLSRERNPPLNDIIEAGLIPKLVEFLSRHDNSTLQFEAAWALTN 143
Query: 116 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVV 175
IASGTS QT+ VV GA+P F+ L+ SPH ++ EQAVWALGNI GDGP RD +IN V+
Sbjct: 144 IASGTSDQTKSVVDGGAIPAFISLISSPHLHISEQAVWALGNIAGDGPLYRDALINCNVI 203
Query: 176 PPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 235
PPLL+ + P P+ +LRN+TW++ NLCRNK+P P MS ++++LP L L+HH D
Sbjct: 204 PPLLALVNPQTPLGYLRNITWMLSNLCRNKNPYPPMSAVLQILPVLTQLMHHDDKD---- 259
Query: 236 LWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK 295
IL DT WA+SYLTDG ND+I +V+ +G+V LI L+
Sbjct: 260 ---------------------ILSDTCWAMSYLTDGSNDRIDVVVKTGIVDRLIQLMYSP 298
Query: 296 EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG 355
E+ + T SLR VGNIVTGTD+QTQ ++ LS P LL H K I KEA W +SNI AG
Sbjct: 299 ELSIVTPSLRTVGNIVTGTDKQTQAAIDAGVLSVLPQLLRHQKPSIQKEAAWAISNIAAG 358
Query: 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAG 414
Q+Q +I GLL ++ L K G Q EA WA+TN S GT Q ++V G
Sbjct: 359 PAPQIQQMITCGLLSPLVDLLNK-GDF----KAQKEAVWAVTNYTSGGTVEQVVQLVQCG 413
Query: 415 AVPLFLRLLMSPHSNVCEQAVWALGNII 442
+ L LL S + A+ NI
Sbjct: 414 VLEPLLNLLTIKDSKTILVILDAISNIF 441
|
Essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope. Xenopus laevis (taxid: 8355) |
| >sp|P52292|IMA2_HUMAN Importin subunit alpha-2 OS=Homo sapiens GN=KPNA2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 363 bits (932), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 206/452 (45%), Positives = 277/452 (61%), Gaps = 40/452 (8%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPL----ADSTDEDDIEKMAQVNLDML-VVEAAR 55
MRRRR EV VELRK K+++ + KRRNV A S +++ VN + +V+
Sbjct: 27 MRRRRIEVNVELRKAKKDDQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVDDIVKGIN 86
Query: 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTN 115
N E QL A Q+ARKLLS +K PPI+ +I +G++P V L R+D +QFE+AWALTN
Sbjct: 87 SSNVENQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGRTDCSPIQFESAWALTN 146
Query: 116 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVV 175
IASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD VI G V
Sbjct: 147 IASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSVFRDLVIKYGAV 206
Query: 176 PPLLSFIK-PD---IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231
PLL+ + PD + +LRN+TW + NLCRNK+P P + + ++LP L L+HH D
Sbjct: 207 DPLLALLAVPDMSSLACGYLRNLTWTLSNLCRNKNPAPPIDAVEQILPTLVRLLHHDDPE 266
Query: 232 VSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291
V L DT WA+SYLTDG N++I MV+ +GVVP L+ L
Sbjct: 267 V-------------------------LADTCWAISYLTDGPNERIGMVVKTGVVPQLVKL 301
Query: 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351
L E+ + T +LRA+GNIVTGTDEQTQV+++ AL+ FP+LLT+PK I KEA W +SN
Sbjct: 302 LGASELPIVTPALRAIGNIVTGTDEQTQVVIDAGALAVFPSLLTNPKTNIQKEATWTMSN 361
Query: 352 ITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEV 410
ITAG Q Q+Q V++ GL+P +++ L K Q EA WA+TN S GT Q +
Sbjct: 362 ITAGRQDQIQQVVNHGLVPFLVSVLSKADF-----KTQKEAVWAVTNYTSGGTVEQIVYL 416
Query: 411 VAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442
V G + + LL + + + + A+ NI
Sbjct: 417 VHCGIIEPLMNLLTAKDTKIILVILDAISNIF 448
|
Functions in nuclear protein import as an adapter protein for nuclear receptor KPNB1. Binds specifically and directly to substrates containing either a simple or bipartite NLS motif. Docking of the importin/substrate complex to the nuclear pore complex (NPC) is mediated by KPNB1 through binding to nucleoporin FxFG repeats and the complex is subsequently translocated through the pore by an energy requiring, Ran-dependent mechanism. At the nucleoplasmic side of the NPC, Ran binds to importin-beta and the three components separate and importin-alpha and -beta are re-exported from the nucleus to the cytoplasm where GTP hydrolysis releases Ran from importin. The directionality of nuclear import is thought to be conferred by an asymmetric distribution of the GTP- and GDP-bound forms of Ran between the cytoplasm and nucleus. Homo sapiens (taxid: 9606) |
| >sp|P52171|IMA2_XENLA Importin subunit alpha-2 OS=Xenopus laevis GN=kpna2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 354 bits (908), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 201/449 (44%), Positives = 274/449 (61%), Gaps = 38/449 (8%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLAD----STDEDDIE--KMAQVNLDMLVVEAA 54
+RRRR EV+VELRK K++E + KRRNV + S +++ ++ ++ Q++L+ +V
Sbjct: 24 LRRRRVEVSVELRKAKKDEQILKRRNVCFPEELILSPEKNAMQSIQVPQLSLEEIVQGMN 83
Query: 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALT 114
DN E +L + Q+ARK+LS ++NPP+ +I +G++P LVE L + LQFEAAWALT
Sbjct: 84 SGDN-ENELRSTQAARKMLSKERNPPLNDIIEAGLIPKLVEFLSYHNNSTLQFEAAWALT 142
Query: 115 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGV 174
NIASGTS QT+ VV GA+P F+ L+ SPH ++ EQAVWALGNI GDGP RD +I+ V
Sbjct: 143 NIASGTSDQTKSVVDGGAIPAFISLISSPHLHISEQAVWALGNIAGDGPLYRDALISCNV 202
Query: 175 VPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI 234
+PPLL+ + P P+ +LRN+TW + NLCRNK+P P MS ++++LP L L+ H D
Sbjct: 203 IPPLLTLVNPQTPLGYLRNITWTLSNLCRNKNPYPPMSAVLQILPVLTQLMLHEDKD--- 259
Query: 235 YLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH 294
IL DT WA+SYLTDG ND+I +V+ +G+V LI L+
Sbjct: 260 ----------------------ILSDTCWAMSYLTDGSNDRIDVVVKTGLVERLIQLMYS 297
Query: 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
E+ + T SLR VGNIVTGTD+QTQ ++ LS P LL H K I KEA W LSNI A
Sbjct: 298 PELSILTPSLRTVGNIVTGTDKQTQAAIDAGVLSVLPQLLRHQKPSIQKEAAWALSNIAA 357
Query: 355 GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAA 413
G Q+Q +I GLL ++ +L K G Q EA WA+TN S GT Q ++V
Sbjct: 358 GPAPQIQQMITCGLLSPLV-DLLKKGDF----KAQKEAVWAVTNYTSGGTVEQVVQLVQC 412
Query: 414 GAVPLFLRLLMSPHSNVCEQAVWALGNII 442
G + L LL S + A+ NI
Sbjct: 413 GVLEPLLNLLTIKDSKTILVILDAISNIF 441
|
It is essential for selective protein import into nucleus. Promotes signal-dependent binding of karyophilic proteins to the nuclear envelope. Xenopus laevis (taxid: 8355) |
| >sp|C1JZ66|IMA8_BOVIN Importin subunit alpha-8 OS=Bos taurus GN=KPNA7 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 341 bits (874), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 190/426 (44%), Positives = 252/426 (59%), Gaps = 32/426 (7%)
Query: 2 RRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPEL 61
R++R V++ELRK K++E KRRN+ D K + L ++ +PEL
Sbjct: 25 RQQRIAVSLELRKAKKDEQALKRRNITDVSLDPSDQQTKGVSLTLQE-IISGVNASDPEL 83
Query: 62 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121
A Q+ARK+LS +KNPP++ ++ +G++P LVE L+ S P LQFEAAWALTNIASG S
Sbjct: 84 CFQATQAARKMLSREKNPPLKLIVDAGLIPRLVELLKSSLHPRLQFEAAWALTNIASGAS 143
Query: 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSF 181
T+ VV GA+ + LL SPH VCEQAVWALGNI GDGP+ RD VI +P LL+
Sbjct: 144 ELTRAVVVGGAIQPLVELLSSPHMTVCEQAVWALGNIAGDGPEFRDNVIASDAIPHLLTL 203
Query: 182 IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSII 241
+ IP+ FLRN+ W + NLCRNK+P PS + ++LPAL L+ H D V
Sbjct: 204 VSSSIPVPFLRNIAWTLSNLCRNKNPYPSDHAVKQMLPALFYLLGHPDREV--------- 254
Query: 242 EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQT 301
L DT WALSYLTDG + +I V+D+GV+P L+ L+S E+ + T
Sbjct: 255 ----------------LSDTCWALSYLTDGCDARIGQVVDTGVLPRLVELMSSSELNILT 298
Query: 302 ASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361
SLR VGNIVTGTD QTQ+ L+ L P LLTHP+ I KEA W LSN+ AG + +Q
Sbjct: 299 PSLRTVGNIVTGTDHQTQLALDAGILGVLPQLLTHPRPSIQKEAAWALSNVAAGPRQHIQ 358
Query: 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA-QTQEVVAAGAVPLFL 420
+I G LP ++A L K G +Q EA W + N +G S Q ++V AG + +
Sbjct: 359 RLIACGALPPLVAVL-KNGEF----KVQKEAVWTVANFTTGGSVEQLIQLVQAGVLEPLI 413
Query: 421 RLLMSP 426
LL P
Sbjct: 414 NLLTIP 419
|
Functions in nuclear protein import. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 845 | ||||||
| 270007768 | 526 | hypothetical protein TcasGA2_TC014465 [T | 0.499 | 0.802 | 0.727 | 1e-177 | |
| 189237585 | 1121 | PREDICTED: similar to importin alpha [Tr | 0.487 | 0.367 | 0.718 | 1e-174 | |
| 357602010 | 512 | karyopherin alpha 3 [Danaus plexippus] | 0.487 | 0.804 | 0.698 | 1e-170 | |
| 322799949 | 514 | hypothetical protein SINV_06287 [Solenop | 0.501 | 0.824 | 0.680 | 1e-168 | |
| 307204672 | 517 | Importin subunit alpha-4 [Harpegnathos s | 0.501 | 0.820 | 0.682 | 1e-167 | |
| 307189922 | 514 | Importin subunit alpha-4 [Camponotus flo | 0.499 | 0.821 | 0.683 | 1e-166 | |
| 332028650 | 514 | Importin subunit alpha-4 [Acromyrmex ech | 0.501 | 0.824 | 0.678 | 1e-166 | |
| 114053323 | 516 | karyopherin alpha 3 [Bombyx mori] gi|951 | 0.502 | 0.823 | 0.667 | 1e-165 | |
| 156553340 | 476 | PREDICTED: importin subunit alpha-3-like | 0.493 | 0.876 | 0.688 | 1e-164 | |
| 383854227 | 515 | PREDICTED: importin subunit alpha-4-like | 0.474 | 0.778 | 0.693 | 1e-164 |
| >gi|270007768|gb|EFA04216.1| hypothetical protein TcasGA2_TC014465 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 627 bits (1618), Expect = e-177, Method: Compositional matrix adjust.
Identities = 323/444 (72%), Positives = 359/444 (80%), Gaps = 22/444 (4%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDIEK ++ NL+ LV +AA DNP
Sbjct: 23 MRRRRNEVTVELRKNKREETLQKRRNVPVVDSTDEDDIEKSLSTTNLEELVAQAAAIDNP 82
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
LQL+A+Q+ARKLLSSD+NPPI+ALI SGILPVLV CLER D P+LQFEAAWALTNIASG
Sbjct: 83 PLQLMAIQTARKLLSSDRNPPIDALISSGILPVLVMCLERYDEPSLQFEAAWALTNIASG 142
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TSAQT VV AGAVPLFL+LL SP NVCEQAVWALGNIIGDGPQLRDYVI +GVV PLL
Sbjct: 143 TSAQTNRVVQAGAVPLFLKLLHSPQQNVCEQAVWALGNIIGDGPQLRDYVIELGVVNPLL 202
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
SFIKPD+PISFLRNVTWVIVNLCRNKDPPP + TI ELLPALN LIHH DT+VS+Y
Sbjct: 203 SFIKPDVPISFLRNVTWVIVNLCRNKDPPPPIQTIRELLPALNALIHHTDTNVSMY---- 258
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
+++ KILVDTVWALSYLTDGGN+QIQMVIDSGVVP LIPLLSHKEVKV
Sbjct: 259 ----QKRVT-------KILVDTVWALSYLTDGGNEQIQMVIDSGVVPKLIPLLSHKEVKV 307
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQV+LNCDALSHFPALL+H KEKICKEAVWFLSNITAGNQ Q
Sbjct: 308 QTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLSHSKEKICKEAVWFLSNITAGNQMQ 367
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDAGLLP II NL K G Q EAAWA++N+ G Q ++ G +P
Sbjct: 368 VQAVIDAGLLPNIINNLSK-GDF----QTQKEAAWAISNLTIGGNKEQVATLIREGVIPP 422
Query: 419 FLRLLMSPHSNVCEQAVWALGNII 442
F LL + V + + + N++
Sbjct: 423 FCDLLSCKDAQVIQVVLDGINNML 446
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189237585|ref|XP_975030.2| PREDICTED: similar to importin alpha [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 619 bits (1595), Expect = e-174, Method: Compositional matrix adjust.
Identities = 319/444 (71%), Positives = 351/444 (79%), Gaps = 32/444 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDIEK ++ NL+ LV +AA DNP
Sbjct: 628 MRRRRNEVTVELRKNKREETLQKRRNVPVVDSTDEDDIEKSLSTTNLEELVAQAAAIDNP 687
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
LQL+A+Q+ARKLLSSD+NPPI+ALI SGILPVLV CLER D P+LQFEAAWALTNIASG
Sbjct: 688 PLQLMAIQTARKLLSSDRNPPIDALISSGILPVLVMCLERYDEPSLQFEAAWALTNIASG 747
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TSAQT VV AGAVPLFL+LL SP NVCEQAVWALGNIIGDGPQLRDYVI +GVV PLL
Sbjct: 748 TSAQTNRVVQAGAVPLFLKLLHSPQQNVCEQAVWALGNIIGDGPQLRDYVIELGVVNPLL 807
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
SFIKPD+PISFLRNVTWVIVNLCRNKDPPP + TI ELLPALN LIHH DT+
Sbjct: 808 SFIKPDVPISFLRNVTWVIVNLCRNKDPPPPIQTIRELLPALNALIHHTDTN-------- 859
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
ILVDTVWALSYLTDGGN+QIQMVIDSGVVP LIPLLSHKEVKV
Sbjct: 860 -----------------ILVDTVWALSYLTDGGNEQIQMVIDSGVVPKLIPLLSHKEVKV 902
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQV+LNCDALSHFPALL+H KEKICKEAVWFLSNITAGNQ Q
Sbjct: 903 QTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLSHSKEKICKEAVWFLSNITAGNQMQ 962
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDAGLLP II NL K G Q EAAWA++N+ G Q ++ G +P
Sbjct: 963 VQAVIDAGLLPNIINNLSK-GDF----QTQKEAAWAISNLTIGGNKEQVATLIREGVIPP 1017
Query: 419 FLRLLMSPHSNVCEQAVWALGNII 442
F LL + V + + + N++
Sbjct: 1018 FCDLLSCKDAQVIQVVLDGINNML 1041
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|357602010|gb|EHJ63242.1| karyopherin alpha 3 [Danaus plexippus] | Back alignment and taxonomy information |
|---|
Score = 605 bits (1559), Expect = e-170, Method: Compositional matrix adjust.
Identities = 310/444 (69%), Positives = 352/444 (79%), Gaps = 32/444 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKREETLQKRRNVP++ STDEDDI++ +A +L+ LV++AA +NP
Sbjct: 23 MRRRRNEVTVELRKNKREETLQKRRNVPVSYSTDEDDIDRTLASTDLEELVMKAANAENP 82
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
E QL AVQ RKLLSSDKNPPI++LI +GILP+LV+CL R+D P LQFEAAWALTNIASG
Sbjct: 83 EEQLAAVQQCRKLLSSDKNPPIDSLITTGILPILVQCLSRTDNPTLQFEAAWALTNIASG 142
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TSAQT +VV AGAVPLFL+LLMSPH NVCEQAVWALGNIIGDGP LRDYV+ +GVV PLL
Sbjct: 143 TSAQTNKVVHAGAVPLFLQLLMSPHENVCEQAVWALGNIIGDGPVLRDYVVELGVVKPLL 202
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
SFIKP IPI+FLRNVTWVIVNLCR+KDPPP + TI E+LPALN LI H D +V
Sbjct: 203 SFIKPGIPITFLRNVTWVIVNLCRSKDPPPPVKTIQEILPALNELITHTDVNV------- 255
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
LVDTVWA+SYLTDGGNDQIQMVI+SG+VP LIPLLSHKEVK
Sbjct: 256 ------------------LVDTVWAISYLTDGGNDQIQMVIESGIVPKLIPLLSHKEVKT 297
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQV+LNCDALSHFPALL+HPKEKICKEAVWFLSNITAGN+ Q
Sbjct: 298 QTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLSHPKEKICKEAVWFLSNITAGNKQQ 357
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDAGLLPKI+ NL K G Q EAAWA++N++ SGTS Q +V G +P
Sbjct: 358 VQAVIDAGLLPKIVENLSK-GEF----QTQKEAAWAVSNLSISGTSEQVAALVQCGVIPP 412
Query: 419 FLRLLMSPHSNVCEQAVWALGNII 442
F LL S V + L N++
Sbjct: 413 FCNLLDCKDSQVINVVLDGLSNML 436
|
Source: Danaus plexippus Species: Danaus plexippus Genus: Danaus Family: Nymphalidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322799949|gb|EFZ21075.1| hypothetical protein SINV_06287 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 597 bits (1540), Expect = e-168, Method: Compositional matrix adjust.
Identities = 311/457 (68%), Positives = 354/457 (77%), Gaps = 33/457 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDI+K ++++NL+ LV +A D P
Sbjct: 25 MRRRRNEVTVELRKNKREETLQKRRNVPITDSTDEDDIDKQLSKINLEELVAKAGSLD-P 83
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
+QL AVQSARKLLSSD+NPPI+ LI SGILP+LV CLE+ + P+LQFEAAWALTNIASG
Sbjct: 84 TVQLQAVQSARKLLSSDRNPPIDPLIESGILPILVRCLEQHNNPSLQFEAAWALTNIASG 143
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TSAQTQ VV AGAVPLFL LL+S NVCEQAVWALGNIIGDGP RDYVIN+GVV PLL
Sbjct: 144 TSAQTQAVVTAGAVPLFLHLLLSSQQNVCEQAVWALGNIIGDGPVPRDYVINLGVVKPLL 203
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
+FIKPDIPI+FLRNVTWVIVNLCRNKDPPP + TI E+LPALN+LIHH+D
Sbjct: 204 TFIKPDIPITFLRNVTWVIVNLCRNKDPPPPVQTIKEILPALNMLIHHND---------- 253
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
+ ILVDTVWALSYLTDGGN QIQMVIDSGVVP LIPLLSHKEVKV
Sbjct: 254 ---------------VNILVDTVWALSYLTDGGNQQIQMVIDSGVVPRLIPLLSHKEVKV 298
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQ +LNCDALSHFP LLTHPKEKICKEAVWFLSNITAGNQ+Q
Sbjct: 299 QTAALRAVGNIVTGTDEQTQTVLNCDALSHFPNLLTHPKEKICKEAVWFLSNITAGNQSQ 358
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDAGLLP II NL K G Q EAAWA++N+ SG Q +++ G +
Sbjct: 359 VQAVIDAGLLPLIIRNLAK-GEF----QTQKEAAWAISNLTISGNREQVAKLIQEGVIAP 413
Query: 419 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455
F LL + V + + + N++ +++ NM
Sbjct: 414 FCDLLSCKDTQVVQVVLDGIHNMLKLAGSQVEHLANM 450
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307204672|gb|EFN83282.1| Importin subunit alpha-4 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1533), Expect = e-167, Method: Compositional matrix adjust.
Identities = 312/457 (68%), Positives = 352/457 (77%), Gaps = 33/457 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDI+K +A+++L+ LV +AA D P
Sbjct: 26 MRRRRNEVTVELRKNKREETLQKRRNVPITDSTDEDDIDKHLAKISLEELVAKAASSD-P 84
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
QL AVQSARKLLSSD+NPPI+ LI SGILP+LV CLE+ + P+LQFEAAWALTNIASG
Sbjct: 85 TEQLQAVQSARKLLSSDRNPPIDPLIESGILPILVGCLEQHNSPSLQFEAAWALTNIASG 144
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TSAQTQ VVAAGAVPLFL LL+S NVCEQAVWALGNIIGDGP RDYVIN+GVV PLL
Sbjct: 145 TSAQTQAVVAAGAVPLFLHLLLSSQQNVCEQAVWALGNIIGDGPVPRDYVINLGVVQPLL 204
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
+FIKPDIPI+FLRNVTWVIVNLCRNKDPPP + TI ++LPALN LIHH D
Sbjct: 205 TFIKPDIPITFLRNVTWVIVNLCRNKDPPPPVQTIKDILPALNALIHHQD---------- 254
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
+ ILVDTVWALSYLTDGGN+QIQMVIDSGVVP LIPLLSHKEVKV
Sbjct: 255 ---------------INILVDTVWALSYLTDGGNEQIQMVIDSGVVPRLIPLLSHKEVKV 299
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQ +LNCDALSHFP LLTHPKEKICKEAVWFLSNITAGNQ+Q
Sbjct: 300 QTAALRAVGNIVTGTDEQTQTVLNCDALSHFPNLLTHPKEKICKEAVWFLSNITAGNQSQ 359
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDA LLP II NL K G Q EAAWA++N+ SG Q ++ G +
Sbjct: 360 VQAVIDAALLPLIIRNLAK-GEF----QTQKEAAWAISNLTVSGNRDQVARLIQEGVIGP 414
Query: 419 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455
F LL + V + + + N++ Q + + NM
Sbjct: 415 FCDLLSCKDTQVVQVVLDGIHNMLKLAGQQVEQLANM 451
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307189922|gb|EFN74158.1| Importin subunit alpha-4 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1529), Expect = e-166, Method: Compositional matrix adjust.
Identities = 313/458 (68%), Positives = 358/458 (78%), Gaps = 36/458 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKR+ETLQKRRNVP DSTDEDDI+K +++++L+ LV +A D P
Sbjct: 25 MRRRRNEVTVELRKNKRDETLQKRRNVP-TDSTDEDDIDKHLSKISLEELVAKAGSSD-P 82
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
+QL AVQSARKLLSSD+NPPI+ LI SGILP+LV CLE+ P+LQFEAAWALTNIASG
Sbjct: 83 AIQLQAVQSARKLLSSDRNPPIDPLIESGILPILVRCLEQHHNPSLQFEAAWALTNIASG 142
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TSAQTQ VVAAGAVPLFL LL+S NVCEQAVWALGNIIGDGP RDYVIN+GVVPPLL
Sbjct: 143 TSAQTQAVVAAGAVPLFLHLLLSSQQNVCEQAVWALGNIIGDGPIPRDYVINLGVVPPLL 202
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
+FIKPDIPI+FLRNVTWVIVNLCRNKDPPP + TI E+LPALN+LIHH+D
Sbjct: 203 TFIKPDIPITFLRNVTWVIVNLCRNKDPPPPVQTIKEILPALNVLIHHND---------- 252
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
+ ILVDTVWALSYLTDGGNDQIQMVIDSGVVP LIPLLSHKEVKV
Sbjct: 253 ---------------INILVDTVWALSYLTDGGNDQIQMVIDSGVVPRLIPLLSHKEVKV 297
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQ++LNCDAL+HFP LLTHPKEKICKEAVWFLSNITAGNQ+Q
Sbjct: 298 QTAALRAVGNIVTGTDEQTQIVLNCDALTHFPNLLTHPKEKICKEAVWFLSNITAGNQSQ 357
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDAGLL II NL K G Q EAAWA++N+ SG Q ++ G +
Sbjct: 358 VQAVIDAGLLALIIRNLAK-GEF----QTQKEAAWAISNLTISGNREQVARLIQEGVIGP 412
Query: 419 FLRLLMSPHSNVCEQAVWALGNIIG-DGPQLRDYVINM 455
F LL + V + + + N++ GPQ+ +++ NM
Sbjct: 413 FCDLLSCKDTQVVQVVLDGIHNMLKLAGPQV-EHLANM 449
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332028650|gb|EGI68684.1| Importin subunit alpha-4 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 593 bits (1528), Expect = e-166, Method: Compositional matrix adjust.
Identities = 310/457 (67%), Positives = 352/457 (77%), Gaps = 33/457 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKREETLQKRRNVP+ DSTDEDDI+K ++++NL+ LV +A D P
Sbjct: 25 MRRRRNEVTVELRKNKREETLQKRRNVPITDSTDEDDIDKQLSKINLEELVAKAGSLD-P 83
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
+QL AVQSARKLLSSD+NPPI+ LI SGILP+LV CLE+ + P+LQFEAAWALTNIASG
Sbjct: 84 TVQLQAVQSARKLLSSDRNPPIDPLIDSGILPILVHCLEQHNNPSLQFEAAWALTNIASG 143
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TSAQTQ VV AGAVPLFL LL+S NVCEQAVWALGNIIGDGP RDYVI +GVV PLL
Sbjct: 144 TSAQTQAVVTAGAVPLFLHLLLSSQQNVCEQAVWALGNIIGDGPVPRDYVIKLGVVKPLL 203
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
+FIKPDIPI+FLRNVTWVIVNLCRNKDPPP + TI E+LPALN+LIHH+D
Sbjct: 204 TFIKPDIPITFLRNVTWVIVNLCRNKDPPPPVQTINEILPALNMLIHHND---------- 253
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
+ ILVDTVWALSYLTDGGN QIQMVIDSGVVP LIPLLSHKEVKV
Sbjct: 254 ---------------VNILVDTVWALSYLTDGGNQQIQMVIDSGVVPRLIPLLSHKEVKV 298
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQ +LNCDALSHFP LLTHPKEKICKEAVWFLSNITAGNQ+Q
Sbjct: 299 QTAALRAVGNIVTGTDEQTQTVLNCDALSHFPNLLTHPKEKICKEAVWFLSNITAGNQSQ 358
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDAGLLP II NL K G Q EAAWA++N+ SG Q ++ G +
Sbjct: 359 VQAVIDAGLLPLIIRNLAK-GEF----QTQKEAAWAISNLTISGNRDQVARLIQEGVIGP 413
Query: 419 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455
F LL + V + + + N++ +++ NM
Sbjct: 414 FCDLLSCKDTQVVQVVLDGIHNMLKLAGAQVEHLANM 450
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|114053323|ref|NP_001040340.1| karyopherin alpha 3 [Bombyx mori] gi|95102560|gb|ABF51218.1| karyopherin alpha 3 [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1520), Expect = e-165, Method: Compositional matrix adjust.
Identities = 305/457 (66%), Positives = 353/457 (77%), Gaps = 32/457 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKREETLQKRRNVP++ STDE++I+K +A +LD LV+ AA +NP
Sbjct: 23 MRRRRNEVTVELRKNKREETLQKRRNVPISYSTDEEEIDKNLATTDLDELVMNAANAENP 82
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
E QL AVQ RKLLS DKNPPI+ LI +GILP+LV+CL R+D P LQFE AWALTNIASG
Sbjct: 83 EAQLAAVQQCRKLLSCDKNPPIDELIAAGILPILVQCLSRADNPALQFETAWALTNIASG 142
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TSAQT +VV AGAVP+FL+LLMSPH NVC+QAVWALGNIIGDGP LRD+VI +GVV PLL
Sbjct: 143 TSAQTNKVVHAGAVPVFLQLLMSPHENVCDQAVWALGNIIGDGPVLRDFVIELGVVKPLL 202
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
S IK DIPI FLRNVTWVIVNLCR+KDPPP + TI E+LPALN+LI H+D+SV
Sbjct: 203 SLIKSDIPIPFLRNVTWVIVNLCRSKDPPPPLKTIQEILPALNVLILHNDSSV------- 255
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
LVDTVWA+SYLTDGGN+QIQMVI+SG+V +LIPLLSHKEVKV
Sbjct: 256 ------------------LVDTVWAISYLTDGGNEQIQMVIESGIVTTLIPLLSHKEVKV 297
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQV+LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN+ Q
Sbjct: 298 QTAALRAVGNIVTGTDEQTQVVLNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNKQQ 357
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDAGLLP ++ANL K G Q EAAWA++N++ SGT Q ++ G +P
Sbjct: 358 VQAVIDAGLLPMMVANLSK-GEF----QTQKEAAWAVSNLSISGTRDQVAALINCGVIPP 412
Query: 419 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455
F LL + V + L N++ + V NM
Sbjct: 413 FCNLLSCKDTQVINVVLDGLSNMLKMAGDNAEQVANM 449
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|156553340|ref|XP_001601185.1| PREDICTED: importin subunit alpha-3-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1510), Expect = e-164, Method: Compositional matrix adjust.
Identities = 311/452 (68%), Positives = 348/452 (76%), Gaps = 35/452 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKREETLQK+RNVP+ DS +EDDI+K +A+ NL LV++AA D P
Sbjct: 14 MRRRRNEVTVELRKNKREETLQKKRNVPVTDS-NEDDIDKQLAKTNLQELVLKAASTD-P 71
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
QL AVQSARKLLSSD+NPPI+ LI SGILP+LV CLE+ D P+LQFEAAWALTNIASG
Sbjct: 72 VEQLQAVQSARKLLSSDRNPPIDPLIASGILPILVGCLEQHDNPSLQFEAAWALTNIASG 131
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TSAQT VV AGAVPLFL LL+S NVCEQAVWALGNIIGDGP LRDYVI +GVVPPLL
Sbjct: 132 TSAQTNAVVQAGAVPLFLHLLLSSQQNVCEQAVWALGNIIGDGPALRDYVIQLGVVPPLL 191
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
+FIKPDIP++FLRNVTWVIVNLCRNKDPPP + TI E+LPALN+LIHH D
Sbjct: 192 TFIKPDIPLTFLRNVTWVIVNLCRNKDPPPPVQTIQEILPALNVLIHHMD---------- 241
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
+ ILVDTVWALSYLTDGGN+QIQMVIDSGVVP LIPLLSHKEVKV
Sbjct: 242 ---------------INILVDTVWALSYLTDGGNEQIQMVIDSGVVPRLIPLLSHKEVKV 286
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQ +LNCDALSHFP LLTHPKEKICKEAVWFLSN+TAGNQ Q
Sbjct: 287 QTAALRAVGNIVTGTDEQTQTVLNCDALSHFPNLLTHPKEKICKEAVWFLSNVTAGNQQQ 346
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDA LLP II NL K G Q EAAWA++N+ SG Q ++ G V
Sbjct: 347 VQAVIDAKLLPLIIRNLSK-GEF----QTQKEAAWAISNLTISGNKEQVARLIEEGVVSP 401
Query: 419 FLRLLMSPHSNVCEQAVWALGNIIG-DGPQLR 449
F LL S V + + + N++ GPQ+
Sbjct: 402 FCDLLSCKDSQVVQVVLDGIHNMLKLAGPQVE 433
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383854227|ref|XP_003702623.1| PREDICTED: importin subunit alpha-4-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 585 bits (1508), Expect = e-164, Method: Compositional matrix adjust.
Identities = 301/434 (69%), Positives = 341/434 (78%), Gaps = 33/434 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEK-MAQVNLDMLVVEAARKDNP 59
MRRRRNEVTVELRKNKR ETLQKRRNVP+ D TDE+D++K ++++NL LV++A D P
Sbjct: 24 MRRRRNEVTVELRKNKRNETLQKRRNVPITDLTDEEDVDKHLSKINLKELVMDAKSPD-P 82
Query: 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119
+QL AV SAR+LLSSD+NPPI+ LIHSGILPVLV CL+ D+P+LQFEAAWALTNIASG
Sbjct: 83 TIQLQAVVSARRLLSSDRNPPIDRLIHSGILPVLVRCLQEHDKPSLQFEAAWALTNIASG 142
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
TS QTQ VV AGAVP FL LL+S NVCEQAVWALGNIIGDGP RDYVI++GVVPPLL
Sbjct: 143 TSPQTQAVVTAGAVPHFLSLLLSSQHNVCEQAVWALGNIIGDGPASRDYVISLGVVPPLL 202
Query: 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 239
FIKPDIPISFLRNVTWVIVNLCRNKDPPP + TI ++LPALN+LIHH D
Sbjct: 203 KFIKPDIPISFLRNVTWVIVNLCRNKDPPPPIQTIKDILPALNVLIHHSD---------- 252
Query: 240 IIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299
+ ILVDTVWALSYLTDGGN+QIQ+VIDSGVVP LIPLLSHKEVKV
Sbjct: 253 ---------------INILVDTVWALSYLTDGGNEQIQLVIDSGVVPRLIPLLSHKEVKV 297
Query: 300 QTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
QTA+LRAVGNIVTGTDEQTQ +LNCDALS+FPALLTHP+EKICKEAVWFLSNITAGNQ+Q
Sbjct: 298 QTAALRAVGNIVTGTDEQTQSVLNCDALSYFPALLTHPREKICKEAVWFLSNITAGNQSQ 357
Query: 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPL 418
VQAVIDAGLLP II NL G Q EAAWA++N+ SG Q ++ AG +P
Sbjct: 358 VQAVIDAGLLPLIIRNLAN-GEF----QTQKEAAWAISNLTISGNRDQVARMIEAGVIPP 412
Query: 419 FLRLLMSPHSNVCE 432
F LL + V +
Sbjct: 413 FCNLLSCKDTQVIQ 426
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 845 | ||||||
| UNIPROTKB|O00505 | 521 | KPNA3 "Importin subunit alpha- | 0.298 | 0.483 | 0.669 | 9.6e-148 | |
| UNIPROTKB|F1MIZ9 | 497 | KPNA3 "Importin subunit alpha" | 0.298 | 0.507 | 0.669 | 1.2e-147 | |
| UNIPROTKB|F1PV58 | 497 | KPNA3 "Importin subunit alpha" | 0.298 | 0.507 | 0.669 | 1.2e-147 | |
| MGI|MGI:1100863 | 521 | Kpna3 "karyopherin (importin) | 0.298 | 0.483 | 0.669 | 1.2e-147 | |
| RGD|1311339 | 521 | Kpna3 "karyopherin alpha 3" [R | 0.298 | 0.483 | 0.669 | 1.2e-147 | |
| ZFIN|ZDB-GENE-030616-541 | 520 | kpna3 "karyopherin (importin) | 0.298 | 0.484 | 0.665 | 6e-146 | |
| MGI|MGI:1100848 | 521 | Kpna4 "karyopherin (importin) | 0.299 | 0.485 | 0.667 | 2e-145 | |
| RGD|1311483 | 521 | Kpna4 "karyopherin alpha 4 (im | 0.299 | 0.485 | 0.667 | 2e-145 | |
| UNIPROTKB|C1JZ67 | 521 | KPNA4 "Importin subunit alpha" | 0.299 | 0.485 | 0.667 | 3.3e-145 | |
| UNIPROTKB|E2RPB3 | 521 | KPNA4 "Importin subunit alpha" | 0.299 | 0.485 | 0.667 | 3.3e-145 |
| UNIPROTKB|O00505 KPNA3 "Importin subunit alpha-3" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 864 (309.2 bits), Expect = 9.6e-148, Sum P(2) = 9.6e-148
Identities = 174/260 (66%), Positives = 207/260 (79%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 57
MRR RNEVTVELRKNKR+E L K+RNVP +S ++ D++ K V L+ +++ A D
Sbjct: 25 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 83
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D P+LQFEAAWALTNIA
Sbjct: 84 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIA 143
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTSAQTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV P
Sbjct: 144 SGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKP 203
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YL 236
LLSFI P IPI+FLRNVTWVIVNLCRNKDPPP M T+ E+LPAL +LI+H D ++ + +
Sbjct: 204 LLSFISPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTV 263
Query: 237 W-LSIIEK--NPQISKILVS 253
W LS + N QI ++ S
Sbjct: 264 WALSYLTDGGNEQIQMVIDS 283
|
|
| UNIPROTKB|F1MIZ9 KPNA3 "Importin subunit alpha" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
Identities = 174/260 (66%), Positives = 207/260 (79%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 57
MRR RNEVTVELRKNKR+E L K+RNVP +S ++ D++ K V L+ +++ A D
Sbjct: 1 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 59
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D P+LQFEAAWALTNIA
Sbjct: 60 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIA 119
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTSAQTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV P
Sbjct: 120 SGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKP 179
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YL 236
LLSFI P IPI+FLRNVTWVIVNLCRNKDPPP M T+ E+LPAL +LI+H D ++ + +
Sbjct: 180 LLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTV 239
Query: 237 W-LSIIEK--NPQISKILVS 253
W LS + N QI ++ S
Sbjct: 240 WALSYLTDGGNEQIQMVIDS 259
|
|
| UNIPROTKB|F1PV58 KPNA3 "Importin subunit alpha" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
Identities = 174/260 (66%), Positives = 207/260 (79%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 57
MRR RNEVTVELRKNKR+E L K+RNVP +S ++ D++ K V L+ +++ A D
Sbjct: 1 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 59
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D P+LQFEAAWALTNIA
Sbjct: 60 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIA 119
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTSAQTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV P
Sbjct: 120 SGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKP 179
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YL 236
LLSFI P IPI+FLRNVTWVIVNLCRNKDPPP M T+ E+LPAL +LI+H D ++ + +
Sbjct: 180 LLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTV 239
Query: 237 W-LSIIEK--NPQISKILVS 253
W LS + N QI ++ S
Sbjct: 240 WALSYLTDGGNEQIQMVIDS 259
|
|
| MGI|MGI:1100863 Kpna3 "karyopherin (importin) alpha 3" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
Identities = 174/260 (66%), Positives = 207/260 (79%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 57
MRR RNEVTVELRKNKR+E L K+RNVP +S ++ D++ K V L+ +++ A D
Sbjct: 25 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 83
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D P+LQFEAAWALTNIA
Sbjct: 84 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIA 143
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTSAQTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV P
Sbjct: 144 SGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKP 203
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YL 236
LLSFI P IPI+FLRNVTWVIVNLCRNKDPPP M T+ E+LPAL +LI+H D ++ + +
Sbjct: 204 LLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTV 263
Query: 237 W-LSIIEK--NPQISKILVS 253
W LS + N QI ++ S
Sbjct: 264 WALSYLTDGGNEQIQMVIDS 283
|
|
| RGD|1311339 Kpna3 "karyopherin alpha 3" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 863 (308.9 bits), Expect = 1.2e-147, Sum P(2) = 1.2e-147
Identities = 174/260 (66%), Positives = 207/260 (79%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 57
MRR RNEVTVELRKNKR+E L K+RNVP +S ++ D++ K V L+ +++ A D
Sbjct: 25 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQNVTLEA-ILQNATSD 83
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
NP +QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV+CLER D P+LQFEAAWALTNIA
Sbjct: 84 NPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALTNIA 143
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTSAQTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV P
Sbjct: 144 SGTSAQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKP 203
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YL 236
LLSFI P IPI+FLRNVTWVIVNLCRNKDPPP M T+ E+LPAL +LI+H D ++ + +
Sbjct: 204 LLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTV 263
Query: 237 W-LSIIEK--NPQISKILVS 253
W LS + N QI ++ S
Sbjct: 264 WALSYLTDGGNEQIQMVIDS 283
|
|
| ZFIN|ZDB-GENE-030616-541 kpna3 "karyopherin (importin) alpha 3" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 6.0e-146, Sum P(2) = 6.0e-146
Identities = 173/260 (66%), Positives = 205/260 (78%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIE---KMAQVNLDMLVVEAARKD 57
MRR RNEVTVELRKNKR+E L K+RNVP +S ++ D++ K V LD +++ A D
Sbjct: 25 MRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDSDFKGQNVTLDA-ILQNATSD 83
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
N +QL AVQ+ARKLLSSD+NPPI+ LI GILP+LV+CLER D P+LQFEAAWALTNIA
Sbjct: 84 NAVVQLSAVQAARKLLSSDRNPPIDDLIKCGILPILVKCLERDDNPSLQFEAAWALTNIA 143
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTSAQTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV P
Sbjct: 144 SGTSAQTQAVVKSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKP 203
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YL 236
LLSFI P IPI+FLRNVTWVIVNLCRNKDPPP M T+ E+LPAL +LI+H D ++ + +
Sbjct: 204 LLSFINPSIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTV 263
Query: 237 W-LSIIEK--NPQISKILVS 253
W LS + N QI ++ S
Sbjct: 264 WALSYLTDGGNEQIQMVIDS 283
|
|
| MGI|MGI:1100848 Kpna4 "karyopherin (importin) alpha 4" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 2.0e-145, Sum P(2) = 2.0e-145
Identities = 173/259 (66%), Positives = 202/259 (77%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 58
MRR+RNEV VELRKNKR+E L KRRNVP D ++ DI+ +V L +V+ A DN
Sbjct: 25 MRRQRNEVVVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQNTSLEAIVQNASSDN 84
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D P+LQFEAAWALTNIAS
Sbjct: 85 QGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIAS 144
Query: 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178
GTS QTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV PL
Sbjct: 145 GTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPL 204
Query: 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YLW 237
LSFI P IPI+FLRNVTWV+VNLCR+KDPPP M TI E+LPAL +LIHH D ++ + +W
Sbjct: 205 LSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVW 264
Query: 238 -LSIIEK--NPQISKILVS 253
LS + N QI ++ S
Sbjct: 265 ALSYLTDAGNEQIQMVIDS 283
|
|
| RGD|1311483 Kpna4 "karyopherin alpha 4 (importin alpha 3)" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 847 (303.2 bits), Expect = 2.0e-145, Sum P(2) = 2.0e-145
Identities = 173/259 (66%), Positives = 202/259 (77%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 58
MRR+RNEV VELRKNKR+E L KRRNVP D ++ DI+ +V L +V+ A DN
Sbjct: 25 MRRQRNEVVVELRKNKRDEHLLKRRNVPQEDICEDSDIDGDYRVQNTSLEAIVQNASSDN 84
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D P+LQFEAAWALTNIAS
Sbjct: 85 QGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIAS 144
Query: 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178
GTS QTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV PL
Sbjct: 145 GTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPL 204
Query: 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YLW 237
LSFI P IPI+FLRNVTWV+VNLCR+KDPPP M TI E+LPAL +LIHH D ++ + +W
Sbjct: 205 LSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVW 264
Query: 238 -LSIIEK--NPQISKILVS 253
LS + N QI ++ S
Sbjct: 265 ALSYLTDAGNEQIQMVIDS 283
|
|
| UNIPROTKB|C1JZ67 KPNA4 "Importin subunit alpha" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 3.3e-145, Sum P(2) = 3.3e-145
Identities = 173/259 (66%), Positives = 202/259 (77%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 58
MRR+RNEV VELRKNKR+E L KRRNVP D ++ DI+ +V L +V+ A DN
Sbjct: 25 MRRQRNEVVVELRKNKRDEHLLKRRNVPHEDICEDSDIDGDYRVQNTSLEAIVQNASSDN 84
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D P+LQFEAAWALTNIAS
Sbjct: 85 QGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIAS 144
Query: 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178
GTS QTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV PL
Sbjct: 145 GTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPL 204
Query: 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YLW 237
LSFI P IPI+FLRNVTWV+VNLCR+KDPPP M TI E+LPAL +LIHH D ++ + +W
Sbjct: 205 LSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVW 264
Query: 238 -LSIIEK--NPQISKILVS 253
LS + N QI ++ S
Sbjct: 265 ALSYLTDAGNEQIQMVIDS 283
|
|
| UNIPROTKB|E2RPB3 KPNA4 "Importin subunit alpha" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 846 (302.9 bits), Expect = 3.3e-145, Sum P(2) = 3.3e-145
Identities = 173/259 (66%), Positives = 202/259 (77%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 58
MRR+RNEV VELRKNKR+E L KRRNVP D ++ DI+ +V L +V+ A DN
Sbjct: 25 MRRQRNEVVVELRKNKRDEHLLKRRNVPHEDICEDSDIDGDYRVQNTSLEAIVQNASSDN 84
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+QL AVQ+ARKLLSSD+NPPI+ LI SGILP+LV CLER D P+LQFEAAWALTNIAS
Sbjct: 85 QGIQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVHCLERDDNPSLQFEAAWALTNIAS 144
Query: 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178
GTS QTQ VV + AVPLFLRLL SPH NVCEQAVWALGNIIGDGPQ RDYVI++GVV PL
Sbjct: 145 GTSEQTQAVVQSNAVPLFLRLLHSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPL 204
Query: 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YLW 237
LSFI P IPI+FLRNVTWV+VNLCR+KDPPP M TI E+LPAL +LIHH D ++ + +W
Sbjct: 205 LSFISPSIPITFLRNVTWVMVNLCRHKDPPPPMETIQEILPALCVLIHHTDVNILVDTVW 264
Query: 238 -LSIIEK--NPQISKILVS 253
LS + N QI ++ S
Sbjct: 265 ALSYLTDAGNEQIQMVIDS 283
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| O35344 | IMA3_MOUSE | No assigned EC number | 0.6591 | 0.4863 | 0.7888 | yes | N/A |
| O00505 | IMA3_HUMAN | No assigned EC number | 0.6591 | 0.4863 | 0.7888 | yes | N/A |
| Q19969 | IMA3_CAEEL | No assigned EC number | 0.5558 | 0.4816 | 0.7918 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 845 | |||
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 1e-122 | |
| COG5064 | 526 | COG5064, SRP1, Karyopherin (importin) alpha [Intra | 3e-87 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 4e-30 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-26 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-24 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 7e-23 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-17 | |
| pfam01749 | 97 | pfam01749, IBB, Importin beta binding domain | 2e-16 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-15 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-13 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 1e-10 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 3e-09 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 5e-09 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 5e-09 | |
| cd00020 | 120 | cd00020, ARM, Armadillo/beta-catenin-like repeats | 2e-08 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 3e-08 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 2e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 3e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 3e-07 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 4e-07 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 5e-07 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 5e-07 | |
| pfam13513 | 55 | pfam13513, HEAT_EZ, HEAT-like repeat | 5e-07 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-06 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 2e-06 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 2e-06 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 2e-06 | |
| pfam13646 | 88 | pfam13646, HEAT_2, HEAT repeats | 5e-06 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 6e-05 | |
| smart00185 | 41 | smart00185, ARM, Armadillo/beta-catenin-like repea | 0.001 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 0.003 | |
| pfam00514 | 41 | pfam00514, Arm, Armadillo/beta-catenin-like repeat | 0.003 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 377 bits (970), Expect = e-122
Identities = 210/455 (46%), Positives = 269/455 (59%), Gaps = 36/455 (7%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML--VVEAARKDN 58
+RRRR E VELRK KREE L KRRN+ E M Q L + + D+
Sbjct: 25 LRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLTQQLFSDD 84
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
E QL AV RKLLS + +PPI+ +I +G++P VE ++ R LQFEAAWALTNIAS
Sbjct: 85 IEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIAS 144
Query: 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178
GT+ QT+ VV AGAVPLF++LL S +V EQAVWALGNI GD RDYV+ G + PL
Sbjct: 145 GTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPL 204
Query: 179 LSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237
L + I IS LRN TW + NLCR K+PPP S I + LP L LI+ D V
Sbjct: 205 LGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEV----- 259
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297
LVD WA+SYL+DG N++IQ V+D G+ L+ LLSH+
Sbjct: 260 --------------------LVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESA 299
Query: 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357
K+QT +LR+VGNIVTG+D+QTQVI+NC AL F +LL+ PKE I KEA W +SNITAGN
Sbjct: 300 KIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNT 359
Query: 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEV---VAAG 414
Q+QAVIDA L+P +I L ++ EA WA++N SG + + V+ G
Sbjct: 360 EQIQAVIDANLIPPLIHLLS-----SAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQG 414
Query: 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449
+ LL + + E A+ A+ NI+ G Q R
Sbjct: 415 FIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDR 449
|
Length = 526 |
| >gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Score = 286 bits (734), Expect = 3e-87
Identities = 176/548 (32%), Positives = 247/548 (45%), Gaps = 104/548 (18%)
Query: 311 VTGTDEQTQVILNCDALSHFP----ALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 366
V+ E + + + S P L + E+ + F ++ +Q VIDA
Sbjct: 54 VSEEAESSFIPMEQQFYSELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDA 113
Query: 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP 426
G++P+ + + ++ R +L QFEAAWALTNIASGT+ QT+ VV AGAVPLF++LL S
Sbjct: 114 GVVPRFVEFMDEIQRDML----QFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST 169
Query: 427 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLC 485
+V EQAVWALGNI GD RDYV+ G + PLL + I IS LRN TW + NLC
Sbjct: 170 EDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLC 229
Query: 486 RNKDPPPSMSTIIELLPALNILIHHHDTSVSI-YLWLSIIEKNPQISKILVSKMKVCSRY 544
R K+PPP S I + LP L LI+ D V + W
Sbjct: 230 RGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWA----------------------- 266
Query: 545 LYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAV 604
+ YLS GP Q +L+ LL+H KI A+
Sbjct: 267 ISYLS--DGPNEK------------------IQAVLDVGIPGRLVELLSHESAKIQTPAL 306
Query: 605 WFLSNITAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNNMVLHNVL 657
+ NI G+ Q Q +I+ G L + N++K +C ++ N+ N
Sbjct: 307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTIS------NITAGNTE 360
Query: 658 LQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAW 717
+V N+ +I+ L A E++ +KEA W
Sbjct: 361 QIQAVIDANLIPPLIHL-------LSSA----------------------EYKIKKEACW 391
Query: 718 AISNLTISGNR--DQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA---- 771
AISN T G D + LV +G I P CDLL D ++I+V LD I N+LK+ +
Sbjct: 392 AISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLR 451
Query: 772 ---QVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDNLGPQVTDG 828
+ A +E+ GG+D I LQ+ N IY AY IIE++F E + D L P+
Sbjct: 452 YGKNINIYAVYVEKAGGMDAIHGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGN 511
Query: 829 GFELDQNP 836
F N
Sbjct: 512 TFTFGSNV 519
|
Length = 526 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 4e-30
Identities = 45/122 (36%), Positives = 66/122 (54%), Gaps = 2/122 (1%)
Query: 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141
EA+I +G LP LV L SD N+Q EAAWAL+N+++G + Q VV AG +P ++LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSD-ENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLK 59
Query: 142 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201
S V + A+WAL N+ + V+ G VP L++ + +N T + NL
Sbjct: 60 SEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNL 118
Query: 202 CR 203
Sbjct: 119 AS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-26
Identities = 42/126 (33%), Positives = 65/126 (51%), Gaps = 6/126 (4%)
Query: 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 420
+AVI AG LP +++ L N+Q EAAWAL+N+++G + Q VV AG +P +
Sbjct: 1 EAVIQAGGLPALVSLLSS-----SDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALV 55
Query: 421 RLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWV 480
+LL S V + A+WAL N+ + V+ G VP L++ + +N T
Sbjct: 56 QLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGA 114
Query: 481 IVNLCR 486
+ NL
Sbjct: 115 LSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 99.3 bits (248), Expect = 1e-24
Identities = 32/99 (32%), Positives = 54/99 (54%)
Query: 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD 315
+ + WALS L+ G ND IQ V+++G +P+L+ LL ++ +V A+L A+ N+ G +
Sbjct: 22 NVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE 81
Query: 316 EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
+ ++L + LL E I K A LSN+ +
Sbjct: 82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 7e-23
Identities = 38/125 (30%), Positives = 65/125 (52%), Gaps = 5/125 (4%)
Query: 277 QMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336
+ VI +G +P+L+ LLS + VQ + A+ N+ G ++ Q ++ L LL
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396
E++ K A+W L N+ AG + V++AG +PK++ L ++Q A AL
Sbjct: 61 EDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSS-----NEDIQKNATGAL 115
Query: 397 TNIAS 401
+N+AS
Sbjct: 116 SNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 78.9 bits (195), Expect = 2e-17
Identities = 34/110 (30%), Positives = 55/110 (50%), Gaps = 2/110 (1%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V + +Q A + L S+ N I+A++ +G LP LV+ L+ D + A
Sbjct: 12 LVSLLSSSDENVQREAAWALSNL-SAGNNDNIQAVVEAGGLPALVQLLKSED-EEVVKAA 69
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159
WAL N+A+G V+ AG VP + LL S + ++ + A AL N+
Sbjct: 70 LWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201951 pfam01749, IBB, Importin beta binding domain | Back alignment and domain information |
|---|
Score = 75.1 bits (185), Expect = 2e-16
Identities = 34/75 (45%), Positives = 45/75 (60%), Gaps = 7/75 (9%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNV--PLADSTD-EDDIEKMAQVNL----DMLVVEA 53
MRRRR EV VELRKNKREE L KRRNV P D + E +++ + + ++V+
Sbjct: 23 MRRRREEVGVELRKNKREEQLLKRRNVGLPPEDGAEPESELDGSSDADQLSLELPVMVQG 82
Query: 54 ARKDNPELQLLAVQS 68
D+PE QL A Q+
Sbjct: 83 VNSDDPENQLSATQA 97
|
This family consists of the importin alpha (karyopherin alpha), importin beta (karyopherin beta) binding domain. The domain mediates formation of the importin alpha beta complex; required for classical NLS import of proteins into the nucleus, through the nuclear pore complex and across the nuclear envelope. Also in the alignment is the NLS of importin alpha which overlaps with the IBB domain. Length = 97 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 73.5 bits (181), Expect = 1e-15
Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 706 QGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNM 765
+ Q+EAAWA+SNL+ +GN D + +V+ G +P LL +D +V++ L + N+
Sbjct: 18 SSDENVQREAAWALSNLS-AGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNL 76
Query: 766 LKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
E ++ E GG+ K+ L + N +I K A + S
Sbjct: 77 AAG----PEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 1e-13
Identities = 34/148 (22%), Positives = 55/148 (37%), Gaps = 30/148 (20%)
Query: 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL--LPALNIL 224
+ VI G +P L+S + + R W + NL + ++E LPAL L
Sbjct: 1 EAVIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQA--VVEAGGLPALVQL 57
Query: 225 IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284
+ D V +WAL L G D +V+++G
Sbjct: 58 LKSEDEEVVKA-------------------------ALWALRNLAAGPEDNKLIVLEAGG 92
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVT 312
VP L+ LL +Q + A+ N+ +
Sbjct: 93 VPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 59.3 bits (144), Expect = 1e-10
Identities = 20/77 (25%), Positives = 35/77 (45%)
Query: 571 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630
G ++ Q ++ L LL E++ K A+W L N+ AG + V++AG +PK+
Sbjct: 37 GNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKL 96
Query: 631 IANLQKRSCKILNKYLD 647
+ L + I
Sbjct: 97 VNLLDSSNEDIQKNATG 113
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 3e-09
Identities = 31/165 (18%), Positives = 49/165 (29%), Gaps = 47/165 (28%)
Query: 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL--LPALNIL 507
+ VI G +P L+S + + R W + NL + ++E LPAL L
Sbjct: 1 EAVIQAGGLPALVSLLSSSDE-NVQREAAWALSNLSAGNNDNIQA--VVEAGGLPALVQL 57
Query: 508 IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMC 567
+ D V K L L+
Sbjct: 58 LKSEDEEVV----------------------KAALWALRNLAAGP--------------- 80
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
++ ++L + LL E I K A LSN+ +
Sbjct: 81 -----EDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
+ Q V+ AGAVP ++LL SP V E+A WAL N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 5e-09
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
+ Q V+ AGAVP ++LL SP V E+A WAL N+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNL 39
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 2e-08
Identities = 21/65 (32%), Positives = 38/65 (58%)
Query: 577 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636
+ ++ L +LL+ E + +EA W LSN++AGN +QAV++AG LP ++ L+
Sbjct: 1 EAVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS 60
Query: 637 RSCKI 641
++
Sbjct: 61 EDEEV 65
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 49.8 bits (120), Expect = 3e-08
Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Query: 78 NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+A+I +G +P LV+ L S +Q EAAWAL+N+A+
Sbjct: 2 PENKQAVIEAGAVPPLVQLL-SSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 47.4 bits (114), Expect = 2e-07
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 77 KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+ +A++ +G LP LVE L+ D + EAAWAL+N++S
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSED-EEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
Q VV AG +P + LL S V ++A WAL N+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 3e-07
Identities = 15/39 (38%), Positives = 20/39 (51%)
Query: 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
Q VV AG +P + LL S V ++A WAL N+
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNL 39
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 4e-07
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 273 NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312
+ Q VI++G VP L+ LLS + +VQ + A+ N+
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 5e-07
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 273 NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIV 311
++ Q V+D+G +P+L+ LL ++ +V + A+ N+
Sbjct: 2 DENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 103 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
++ AA AL +A G + V +P L LL V E A WALG I
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|205691 pfam13513, HEAT_EZ, HEAT-like repeat | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 5e-07
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
Query: 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
++ AA AL +A G + V +P L LL V E A WALG I
Sbjct: 1 WEVREAAALALGALAGGGPELLRPAVPE-LLPALLPLLKDDDDEVREAAAWALGRI 55
|
The HEAT repeat family is related to armadillo/beta-catenin-like repeats (see pfam00514). These EZ repeats are found in subunits of cyanobacterial phycocyanin lyase and other proteins and probably carry out a scaffolding role. Length = 55 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 314 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
+ E Q ++ A+ LL+ P E++ +EA W LSN+ A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 2e-06
Identities = 14/41 (34%), Positives = 23/41 (56%)
Query: 572 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
+ E Q ++ A+ LL+ P E++ +EA W LSN+ A
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 314 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
DE Q +++ L LL E++ KEA W LSN+++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-06
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 572 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
DE Q +++ L LL E++ KEA W LSN+++
Sbjct: 1 DDENKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|222285 pfam13646, HEAT_2, HEAT repeats | Back alignment and domain information |
|---|
Score = 45.0 bits (107), Expect = 5e-06
Identities = 20/69 (28%), Positives = 26/69 (37%), Gaps = 11/69 (15%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
L L+E L P ++ AA AL + A+P L LL P V
Sbjct: 1 LEALLEALLSDPDPEVRAAAARALGELGD-----------PEALPALLELLKDPDPEVRR 49
Query: 150 QAVWALGNI 158
A ALG +
Sbjct: 50 AAAEALGKL 58
|
This family includes multiple HEAT repeats. Length = 88 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 40.5 bits (96), Expect = 6e-05
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401
+ QAVI+AG +P ++ L +Q EAAWAL+N+A+
Sbjct: 1 SPENKQAVIEAGAVPPLVQLLSSP-----DEEVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|214547 smart00185, ARM, Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Score = 37.0 bits (87), Expect = 0.001
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 5/46 (10%)
Query: 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401
+ QAV+DAG LP ++ L+ + EAAWAL+N++S
Sbjct: 1 DDENKQAVVDAGGLPALVELLK-----SEDEEVVKEAAWALSNLSS 41
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203
P+ + VI G VPPL+ + W + NL
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDE-EVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
| >gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat | Back alignment and domain information |
|---|
Score = 35.9 bits (84), Expect = 0.003
Identities = 11/41 (26%), Positives = 16/41 (39%), Gaps = 1/41 (2%)
Query: 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486
P+ + VI G VPPL+ + W + NL
Sbjct: 2 PENKQAVIEAGAVPPLVQLLSSPDE-EVQEEAAWALSNLAA 41
|
Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 845 | |||
| KOG0166|consensus | 514 | 100.0 | ||
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| PLN03200 | 2102 | cellulose synthase-interactive protein; Provisiona | 100.0 | |
| COG5064 | 526 | SRP1 Karyopherin (importin) alpha [Intracellular t | 100.0 | |
| KOG0166|consensus | 514 | 100.0 | ||
| KOG4224|consensus | 550 | 99.97 | ||
| KOG4224|consensus | 550 | 99.97 | ||
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.93 | |
| PF05804 | 708 | KAP: Kinesin-associated protein (KAP) | 99.91 | |
| KOG1048|consensus | 717 | 99.81 | ||
| KOG1048|consensus | 717 | 99.78 | ||
| KOG4500|consensus | 604 | 99.74 | ||
| KOG0168|consensus | 1051 | 99.73 | ||
| KOG2171|consensus | 1075 | 99.7 | ||
| KOG4199|consensus | 461 | 99.69 | ||
| KOG1241|consensus | 859 | 99.67 | ||
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.65 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.65 | |
| PF10508 | 503 | Proteasom_PSMB: Proteasome non-ATPase 26S subunit; | 99.65 | |
| KOG4500|consensus | 604 | 99.65 | ||
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.64 | |
| KOG1293|consensus | 678 | 99.64 | ||
| KOG2171|consensus | 1075 | 99.61 | ||
| KOG2122|consensus | 2195 | 99.61 | ||
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.6 | |
| KOG2023|consensus | 885 | 99.6 | ||
| KOG1222|consensus | 791 | 99.58 | ||
| KOG4199|consensus | 461 | 99.57 | ||
| KOG1293|consensus | 678 | 99.56 | ||
| KOG1241|consensus | 859 | 99.52 | ||
| KOG2122|consensus | 2195 | 99.51 | ||
| KOG2023|consensus | 885 | 99.49 | ||
| PRK09687 | 280 | putative lyase; Provisional | 99.49 | |
| KOG1222|consensus | 791 | 99.44 | ||
| PRK09687 | 280 | putative lyase; Provisional | 99.43 | |
| PF01602 | 526 | Adaptin_N: Adaptin N terminal region; InterPro: IP | 99.38 | |
| PTZ00429 | 746 | beta-adaptin; Provisional | 99.38 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.35 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.35 | |
| PF04826 | 254 | Arm_2: Armadillo-like; InterPro: IPR006911 This en | 99.32 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.31 | |
| PRK13800 | 897 | putative oxidoreductase/HEAT repeat-containing pro | 99.31 | |
| cd00020 | 120 | ARM Armadillo/beta-catenin-like repeats. An approx | 99.22 | |
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.21 | |
| KOG0946|consensus | 970 | 99.18 | ||
| KOG0168|consensus | 1051 | 99.17 | ||
| KOG0946|consensus | 970 | 99.17 | ||
| cd00256 | 429 | VATPase_H VATPase_H, regulatory vacuolar ATP synth | 99.06 | |
| COG5215 | 858 | KAP95 Karyopherin (importin) beta [Intracellular t | 99.04 | |
| KOG1824|consensus | 1233 | 98.97 | ||
| KOG1824|consensus | 1233 | 98.96 | ||
| KOG2160|consensus | 342 | 98.94 | ||
| KOG0213|consensus | 1172 | 98.86 | ||
| KOG1059|consensus | 877 | 98.84 | ||
| KOG2160|consensus | 342 | 98.84 | ||
| KOG1062|consensus | 866 | 98.74 | ||
| KOG2759|consensus | 442 | 98.74 | ||
| KOG1060|consensus | 968 | 98.7 | ||
| KOG0213|consensus | 1172 | 98.7 | ||
| KOG1062|consensus | 866 | 98.69 | ||
| KOG2759|consensus | 442 | 98.68 | ||
| KOG4413|consensus | 524 | 98.63 | ||
| KOG1789|consensus | 2235 | 98.6 | ||
| KOG1789|consensus | 2235 | 98.56 | ||
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.55 | |
| KOG1061|consensus | 734 | 98.54 | ||
| PF03224 | 312 | V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004 | 98.53 | |
| KOG1059|consensus | 877 | 98.52 | ||
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.5 | |
| KOG1517|consensus | 1387 | 98.44 | ||
| KOG1242|consensus | 569 | 98.44 | ||
| PF01749 | 97 | IBB: Importin beta binding domain; InterPro: IPR00 | 98.39 | |
| KOG4413|consensus | 524 | 98.37 | ||
| KOG3678|consensus | 832 | 98.35 | ||
| KOG1061|consensus | 734 | 98.29 | ||
| PF05536 | 543 | Neurochondrin: Neurochondrin | 98.28 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.26 | |
| KOG3678|consensus | 832 | 98.25 | ||
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.25 | |
| KOG1060|consensus | 968 | 98.2 | ||
| KOG0212|consensus | 675 | 98.2 | ||
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 98.16 | |
| KOG1242|consensus | 569 | 98.15 | ||
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 98.12 | |
| TIGR02270 | 410 | conserved hypothetical protein. Members are found | 98.11 | |
| COG5369 | 743 | Uncharacterized conserved protein [Function unknow | 98.11 | |
| KOG0915|consensus | 1702 | 98.09 | ||
| KOG0211|consensus | 759 | 98.08 | ||
| KOG0212|consensus | 675 | 98.08 | ||
| KOG1058|consensus | 948 | 98.05 | ||
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 98.01 | |
| PRK14707 | 2710 | hypothetical protein; Provisional | 97.99 | |
| COG5181 | 975 | HSH155 U2 snRNP spliceosome subunit [RNA processin | 97.96 | |
| KOG1077|consensus | 938 | 97.96 | ||
| KOG0915|consensus | 1702 | 97.95 | ||
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.92 | |
| KOG4646|consensus | 173 | 97.89 | ||
| COG1413 | 335 | FOG: HEAT repeat [Energy production and conversion | 97.89 | |
| PF14664 | 371 | RICTOR_N: Rapamycin-insensitive companion of mTOR, | 97.86 | |
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 97.85 | |
| KOG2973|consensus | 353 | 97.83 | ||
| KOG1943|consensus | 1133 | 97.81 | ||
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.79 | |
| PF00514 | 41 | Arm: Armadillo/beta-catenin-like repeat; InterPro: | 97.76 | |
| KOG1943|consensus | 1133 | 97.75 | ||
| KOG0211|consensus | 759 | 97.74 | ||
| KOG4646|consensus | 173 | 97.65 | ||
| PRK14707 | 2710 | hypothetical protein; Provisional | 97.64 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 97.6 | |
| KOG1058|consensus | 948 | 97.57 | ||
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 97.57 | |
| KOG2259|consensus | 823 | 97.56 | ||
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 97.5 | |
| KOG2259|consensus | 823 | 97.47 | ||
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 97.44 | |
| KOG4535|consensus | 728 | 97.43 | ||
| KOG2734|consensus | 536 | 97.43 | ||
| KOG1240|consensus | 1431 | 97.41 | ||
| KOG1517|consensus | 1387 | 97.41 | ||
| KOG2973|consensus | 353 | 97.4 | ||
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 97.38 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 97.38 | |
| KOG1991|consensus | 1010 | 97.37 | ||
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.37 | |
| PF13646 | 88 | HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I | 97.32 | |
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.28 | |
| COG5096 | 757 | Vesicle coat complex, various subunits [Intracellu | 97.24 | |
| KOG1240|consensus | 1431 | 97.18 | ||
| PF13513 | 55 | HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O | 97.17 | |
| KOG1078|consensus | 865 | 97.16 | ||
| KOG0567|consensus | 289 | 97.14 | ||
| KOG2734|consensus | 536 | 97.11 | ||
| KOG1077|consensus | 938 | 96.99 | ||
| COG5240 | 898 | SEC21 Vesicle coat complex COPI, gamma subunit [In | 96.96 | |
| KOG1991|consensus | 1010 | 96.94 | ||
| PF12348 | 228 | CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi | 96.91 | |
| KOG2062|consensus | 929 | 96.85 | ||
| PF12460 | 415 | MMS19_C: RNAPII transcription regulator C-terminal | 96.82 | |
| KOG2274|consensus | 1005 | 96.81 | ||
| COG5231 | 432 | VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene | 96.76 | |
| smart00185 | 41 | ARM Armadillo/beta-catenin-like repeats. Approx. 4 | 96.76 | |
| PF10165 | 446 | Ric8: Guanine nucleotide exchange factor synembryn | 96.7 | |
| KOG0414|consensus | 1251 | 96.68 | ||
| PF09759 | 102 | Atx10homo_assoc: Spinocerebellar ataxia type 10 pr | 96.64 | |
| KOG0567|consensus | 289 | 96.64 | ||
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 96.62 | |
| KOG1078|consensus | 865 | 96.59 | ||
| KOG2062|consensus | 929 | 96.57 | ||
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 96.5 | |
| KOG0414|consensus | 1251 | 96.44 | ||
| KOG1020|consensus | 1692 | 96.22 | ||
| KOG2274|consensus | 1005 | 96.09 | ||
| KOG4151|consensus | 748 | 96.08 | ||
| KOG4535|consensus | 728 | 96.02 | ||
| PF12755 | 97 | Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | 95.95 | |
| KOG1248|consensus | 1176 | 95.92 | ||
| KOG1020|consensus | 1692 | 95.89 | ||
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.79 | |
| KOG4151|consensus | 748 | 95.74 | ||
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 95.7 | |
| KOG3036|consensus | 293 | 95.7 | ||
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 95.64 | |
| KOG1967|consensus | 1030 | 95.61 | ||
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 95.61 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 95.61 | |
| KOG1967|consensus | 1030 | 95.55 | ||
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 95.4 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 95.4 | |
| PF11698 | 119 | V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011 | 95.4 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 95.18 | |
| KOG3665|consensus | 699 | 95.05 | ||
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 95.01 | |
| PF12717 | 178 | Cnd1: non-SMC mitotic condensation complex subunit | 94.94 | |
| KOG2956|consensus | 516 | 94.91 | ||
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 94.79 | |
| KOG3036|consensus | 293 | 94.76 | ||
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 94.63 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 94.5 | |
| PF05004 | 309 | IFRD: Interferon-related developmental regulator ( | 94.48 | |
| PF05918 | 556 | API5: Apoptosis inhibitory protein 5 (API5); Inter | 94.32 | |
| KOG4653|consensus | 982 | 94.26 | ||
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 94.23 | |
| PF11841 | 160 | DUF3361: Domain of unknown function (DUF3361) | 93.94 | |
| KOG1820|consensus | 815 | 93.89 | ||
| PF04078 | 262 | Rcd1: Cell differentiation family, Rcd1-like ; Int | 93.85 | |
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 93.66 | |
| PF02985 | 31 | HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re | 93.61 | |
| KOG3665|consensus | 699 | 93.43 | ||
| KOG4653|consensus | 982 | 93.36 | ||
| PF07814 | 361 | WAPL: Wings apart-like protein regulation of heter | 93.13 | |
| KOG2956|consensus | 516 | 92.55 | ||
| PF08045 | 257 | CDC14: Cell division control protein 14, SIN compo | 92.5 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 92.5 | |
| KOG1788|consensus | 2799 | 92.37 | ||
| PF12719 | 298 | Cnd3: Nuclear condensing complex subunits, C-term | 92.16 | |
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 91.86 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 91.8 | |
| KOG1832|consensus | 1516 | 91.73 | ||
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 91.51 | |
| PF11701 | 157 | UNC45-central: Myosin-binding striated muscle asse | 91.29 | |
| PF13764 | 802 | E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | 91.01 | |
| PF14668 | 73 | RICTOR_V: Rapamycin-insensitive companion of mTOR, | 90.99 | |
| PF11865 | 160 | DUF3385: Domain of unknown function (DUF3385); Int | 90.85 | |
| PF11864 | 464 | DUF3384: Domain of unknown function (DUF3384); Int | 90.72 | |
| PF12530 | 234 | DUF3730: Protein of unknown function (DUF3730) ; I | 90.59 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 90.59 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 90.24 | |
| PF06025 | 379 | DUF913: Domain of Unknown Function (DUF913); Inter | 90.12 | |
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 89.67 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 89.43 | |
| PF08569 | 335 | Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro | 89.29 | |
| KOG1243|consensus | 690 | 89.01 | ||
| COG5656 | 970 | SXM1 Importin, protein involved in nuclear import | 88.66 | |
| KOG4464|consensus | 532 | 88.66 | ||
| KOG2005|consensus | 878 | 88.47 | ||
| COG5116 | 926 | RPN2 26S proteasome regulatory complex component [ | 88.42 | |
| PF12031 | 257 | DUF3518: Domain of unknown function (DUF3518); Int | 88.08 | |
| KOG2025|consensus | 892 | 87.67 | ||
| KOG1243|consensus | 690 | 87.1 | ||
| KOG1820|consensus | 815 | 87.01 | ||
| PF12830 | 187 | Nipped-B_C: Sister chromatid cohesion C-terminus | 86.78 | |
| PF11707 | 330 | Npa1: Ribosome 60S biogenesis N-terminal; InterPro | 86.63 | |
| KOG2611|consensus | 698 | 86.44 | ||
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 86.41 | |
| KOG2032|consensus | 533 | 86.16 | ||
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 86.12 | |
| PF06371 | 187 | Drf_GBD: Diaphanous GTPase-binding Domain; InterPr | 86.06 | |
| KOG4464|consensus | 532 | 85.97 | ||
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 85.55 | |
| smart00638 | 574 | LPD_N Lipoprotein N-terminal Domain. | 85.35 | |
| COG5209 | 315 | RCD1 Uncharacterized protein involved in cell diff | 85.31 | |
| PF04063 | 192 | DUF383: Domain of unknown function (DUF383); Inter | 84.91 | |
| KOG2137|consensus | 700 | 84.7 | ||
| KOG2032|consensus | 533 | 84.6 | ||
| KOG2999|consensus | 713 | 84.54 | ||
| PF14225 | 262 | MOR2-PAG1_C: Cell morphogenesis C-terminal | 84.45 | |
| PF13251 | 182 | DUF4042: Domain of unknown function (DUF4042) | 83.95 | |
| COG5098 | 1128 | Chromosome condensation complex Condensin, subunit | 83.54 | |
| PRK09169 | 2316 | hypothetical protein; Validated | 82.61 | |
| KOG2025|consensus | 892 | 82.09 | ||
| PF01603 | 409 | B56: Protein phosphatase 2A regulatory B subunit ( | 82.05 | |
| PF04869 | 312 | Uso1_p115_head: Uso1 / p115 like vesicle tethering | 81.81 | |
| KOG2999|consensus | 713 | 81.39 | ||
| PF08167 | 165 | RIX1: rRNA processing/ribosome biogenesis | 81.21 | |
| PF01347 | 618 | Vitellogenin_N: Lipoprotein amino terminal region; | 80.36 | |
| PF10363 | 92 | DUF2435: Protein of unknown function (DUF2435) | 80.11 |
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-70 Score=579.36 Aligned_cols=487 Identities=57% Similarity=0.909 Sum_probs=438.5
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCCCCCCh--hhHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDE--DDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKN 78 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~~~~~~--~~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~ 78 (845)
|||||++..+||||+||+|.+.|||+..+.....+ ...+.. ....+..+ .++.+++++.+..++.+++++++.+.+
T Consensus 22 ~Rrrr~e~~veiRk~kree~l~k~R~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~S~~~~~q~~a~~~~rkllS~~~~ 99 (514)
T KOG0166|consen 22 MRRRREEQVVEIRKNKREESLLKRRNDEEELMLDELLSDSQSQ-ASNLELML-AALYSDDPQQQLTATQAFRKLLSKERN 99 (514)
T ss_pred HHHhcchhHHHHHHHHHHHHHHHHhhhhhhcccccccchhHHH-hhhhHHHH-HHHhCCCHHHHHHHHHHHHHHHccCCC
Confidence 79999999999999999999999998322211111 111111 12266777 899999999999999999999999999
Q ss_pred ccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHh
Q psy12605 79 PPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158 (845)
Q Consensus 79 ~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nl 158 (845)
++++.++.+|++|.+|+.|+..+++.+|.+|+|+|+++|++++++.+.++++|++|.|++++.+++.+++++|+|+|||+
T Consensus 100 ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNI 179 (514)
T KOG0166|consen 100 PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNI 179 (514)
T ss_pred CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhcc
Confidence 99999999999999999998778899999999999999999999999999999999999999999999999999999999
Q ss_pred cCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHH
Q psy12605 159 IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWL 238 (845)
Q Consensus 159 a~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~ 238 (845)
+++++.+|+.+++.|++++|+.++..+....+.++++|+|+|||++.+|.+.+.....++|.|..++++.|++
T Consensus 180 agds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~------- 252 (514)
T KOG0166|consen 180 AGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEE------- 252 (514)
T ss_pred ccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHH-------
Confidence 9999999999999999999999999887778999999999999999999999999999999999999999999
Q ss_pred HHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhH
Q psy12605 239 SIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT 318 (845)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~ 318 (845)
+..+|||+++||+++.++.++++++.|+++.|+.+|.+.+..++.+|++++||++.+++.+.
T Consensus 253 ------------------Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QT 314 (514)
T KOG0166|consen 253 ------------------VLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQT 314 (514)
T ss_pred ------------------HHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999988887
Q ss_pred HHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 319 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 319 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
+.++++|+++.|..++..
T Consensus 315 q~vi~~~~L~~l~~ll~~-------------------------------------------------------------- 332 (514)
T KOG0166|consen 315 QVVINSGALPVLSNLLSS-------------------------------------------------------------- 332 (514)
T ss_pred HHHHhcChHHHHHHHhcc--------------------------------------------------------------
Confidence 877777666555444431
Q ss_pred HhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHH
Q psy12605 399 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVT 478 (845)
Q Consensus 399 l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~ 478 (845)
T Consensus 333 -------------------------------------------------------------------------------- 332 (514)
T KOG0166|consen 333 -------------------------------------------------------------------------------- 332 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccc
Q psy12605 479 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558 (845)
Q Consensus 479 ~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 558 (845)
T Consensus 333 -------------------------------------------------------------------------------- 332 (514)
T KOG0166|consen 333 -------------------------------------------------------------------------------- 332 (514)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhh
Q psy12605 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRS 638 (845)
Q Consensus 559 ~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 638 (845)
++...++++|||+||||++|++++++.++++|++|.|+.++
T Consensus 333 -----------------------------------s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l---- 373 (514)
T KOG0166|consen 333 -----------------------------------SPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLL---- 373 (514)
T ss_pred -----------------------------------CcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHH----
Confidence 11224678899999999999999999999999999999998
Q ss_pred hhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHH
Q psy12605 639 CKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWA 718 (845)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 718 (845)
.++++++|+||+|+
T Consensus 374 ------------------------------------------------------------------~~~ef~~rKEAawa 387 (514)
T KOG0166|consen 374 ------------------------------------------------------------------QTAEFDIRKEAAWA 387 (514)
T ss_pred ------------------------------------------------------------------hccchHHHHHHHHH
Confidence 56779999999999
Q ss_pred HHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHH----HHHHHHHHHhChHHHHHhhhc
Q psy12605 719 ISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQV----ETLANMIEECGGLDKIEMLQN 794 (845)
Q Consensus 719 l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~----~~~~~~~~e~g~~~~L~~l~~ 794 (845)
++|++..|+++++..|++.|+|++|+++|...|.+++..++++|++|++.++... +.+..+++|+||.++++.|++
T Consensus 388 IsN~ts~g~~~qi~yLv~~giI~plcdlL~~~D~~ii~v~Ld~l~nil~~~e~~~~~~~n~~~~~IEe~ggldkiE~LQ~ 467 (514)
T KOG0166|consen 388 ISNLTSSGTPEQIKYLVEQGIIKPLCDLLTCPDVKIILVALDGLENILKVGEAEKNRGTNPLAIMIEEAGGLDKIENLQS 467 (514)
T ss_pred HHhhcccCCHHHHHHHHHcCCchhhhhcccCCChHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHccChhHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999998865 789999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccCCCCCCCCCCCCC
Q psy12605 795 HENVEIYKLAYDIIERYFSEVEDEDNLGPQVTDGGFELDQNPSIPNEGFKF 845 (845)
Q Consensus 795 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (845)
|+|+++|++|..++++||..+||++...|... +|.++++ .|.+||.|
T Consensus 468 hen~~Iy~~A~~II~~yf~~e~~~~~~~~~~~--~~~~~~~--~~~~~f~f 514 (514)
T KOG0166|consen 468 HENEEIYKKAYKIIDTYFSEEDDEDDQQPTTS--QFTFQVQ--APDGGFNF 514 (514)
T ss_pred cccHHHHHHHHHHHHHhcCCCccccccccccc--ccccCCC--CCCCCCCC
Confidence 99999999999999999999977776655443 7777777 68899998
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-70 Score=530.85 Aligned_cols=485 Identities=49% Similarity=0.793 Sum_probs=437.7
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCC-CCCCChh--hHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCC
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPL-ADSTDED--DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDK 77 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~-~~~~~~~--~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~ 77 (845)
+||+|++.+++|||+||+|.|+|||++.+ .++..+. +.+..+...+|.+. ..+.|+|-+.+++|+..+|++++.+.
T Consensus 25 lRr~ReeQQvElRkqKreE~LnKrRNl~dv~e~a~ss~i~meqq~~~elp~lt-~~l~SdDie~q~qav~kFR~~LS~E~ 103 (526)
T COG5064 25 LRRRREEQQVELRKQKREELLNKRRNLADVSEEAESSFIPMEQQFYSELPQLT-QQLFSDDIEQQLQAVYKFRKLLSKET 103 (526)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccchhhhccCchhHHhhhhhHHHH-HHHhhhHHHHHHHHHHHHHHHhcccc
Confidence 58999999999999999999999999933 2222111 23333444678998 89999999999999999999999999
Q ss_pred CccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHH
Q psy12605 78 NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 157 (845)
Q Consensus 78 ~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~n 157 (845)
+++++.++++|++|++|+++........+.+|+|+|+++++++....+.+++.|++|.++++|.+++.+++++++|+|||
T Consensus 104 ~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGN 183 (526)
T COG5064 104 SPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGN 183 (526)
T ss_pred CCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhcc
Confidence 99999999999999999999656666789999999999999999999999999999999999999999999999999999
Q ss_pred hcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHH
Q psy12605 158 IIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236 (845)
Q Consensus 158 la~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~ 236 (845)
++++++.+|+.+.++|++++++.++.++. +.++.+++.|+|+|||++.+|++....+..++|.|.+++.+.|++
T Consensus 184 iAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~e----- 258 (526)
T COG5064 184 IAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPE----- 258 (526)
T ss_pred ccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHH-----
Confidence 99999999999999999999999997654 479999999999999999999999999999999999999999999
Q ss_pred HHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh
Q psy12605 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
+..+|||+++|++++..+.++.+++.|..++|+++|.+++..++.+|++.+||++.+++.
T Consensus 259 --------------------vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~ 318 (526)
T COG5064 259 --------------------VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDD 318 (526)
T ss_pred --------------------HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCcc
Confidence 999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHH
Q psy12605 317 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L 396 (845)
+.+.++++|+++.+..+|+++.+.+|++|||+++|+.+++.++++.+++.+++|+|+.+|... +.
T Consensus 319 QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-----e~---------- 383 (526)
T COG5064 319 QTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-----EY---------- 383 (526)
T ss_pred ceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-----HH----------
Confidence 999999999999999999999999999999999999999999999999999999998887653 11
Q ss_pred HHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHH
Q psy12605 397 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRN 476 (845)
Q Consensus 397 ~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~ 476 (845)
T Consensus 384 -------------------------------------------------------------------------------- 383 (526)
T COG5064 384 -------------------------------------------------------------------------------- 383 (526)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcc
Q psy12605 477 VTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMS 556 (845)
Q Consensus 477 ~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~ 556 (845)
T Consensus 384 -------------------------------------------------------------------------------- 383 (526)
T COG5064 384 -------------------------------------------------------------------------------- 383 (526)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhh
Q psy12605 557 CQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636 (845)
Q Consensus 557 ~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~ 636 (845)
.++++|||+++|...+.
T Consensus 384 -----------------------------------------k~kKEACWAisNatsgg---------------------- 400 (526)
T COG5064 384 -----------------------------------------KIKKEACWAISNATSGG---------------------- 400 (526)
T ss_pred -----------------------------------------HHHHHHHHHHHhhhccc----------------------
Confidence 25567777777754320
Q ss_pred hhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHH
Q psy12605 637 RSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716 (845)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 716 (845)
T Consensus 401 -------------------------------------------------------------------------------- 400 (526)
T COG5064 401 -------------------------------------------------------------------------------- 400 (526)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHhChHHHH
Q psy12605 717 WAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQ-------VETLANMIEECGGLDKI 789 (845)
Q Consensus 717 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~-------~~~~~~~~~e~g~~~~L 789 (845)
..-|+.++.|++.|+|++|+++|...|.++.+.+++++.++++.|+.. .+.|..+++++|+++.+
T Consensus 401 --------~~~PD~iryLv~qG~IkpLc~~L~~~dNkiiev~LD~~eniLk~Ge~d~~~~~~nin~ya~~vE~Aggmd~I 472 (526)
T COG5064 401 --------LNRPDIIRYLVSQGFIKPLCDLLDVVDNKIIEVALDAIENILKVGEQDRLRYGKNINIYAVYVEKAGGMDAI 472 (526)
T ss_pred --------cCCchHHHHHHHccchhHHHHHHhccCccchhhhHHHHHHHHhhhhHHHHhccCCccHHHHHHHhcccHHHH
Confidence 123566788999999999999999999999999999999999988764 35688999999999999
Q ss_pred HhhhcCCCHHHHHHHHHHHHHhcCcccCCCCCCCCCCCCCcccCCCCC
Q psy12605 790 EMLQNHENVEIYKLAYDIIERYFSEVEDEDNLGPQVTDGGFELDQNPS 837 (845)
Q Consensus 790 ~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 837 (845)
..++++.|..++.+|..++++||.++|.-|++.|+..+|.|.|-.++.
T Consensus 473 ~~~Q~s~n~~iy~KAYsIIe~fFgeeD~vd~lapet~g~tftfg~~~~ 520 (526)
T COG5064 473 HGLQDSVNRTIYDKAYSIIEKFFGEEDAVDELAPETAGNTFTFGSNVN 520 (526)
T ss_pred HHhhhccccHHHHHHHHHHHHHcccchhhhhcCccccCCeeecCCCcc
Confidence 999999999999999999999999999999999999999999965543
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-54 Score=516.78 Aligned_cols=661 Identities=19% Similarity=0.203 Sum_probs=549.4
Q ss_pred hcHHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHH-hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 44 VNLDMLVVEAARKD--NPELQLLAVQSARKLLSSDKNPPIEALI-HSGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 44 ~~i~~lv~~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
..+..++ +.|.+. .++.+..|+..|+.+...+. .+...+. ..|.+|.|+.+| .++++.+|..|+.+|.+++.+
T Consensus 13 ~~v~~Lv-e~L~s~~ss~~~~~~Al~~Lr~Lak~~~-enR~~Ia~~aGaIP~LV~lL-~sg~~~vk~nAaaaL~nLS~~- 88 (2102)
T PLN03200 13 ASVAQCI-EQLRAKSSSPQEKELTTARLLELAKTRE-EARKAIGSHSQAMPLLVSLL-RSGTLGAKVNAAAVLGVLCKE- 88 (2102)
T ss_pred HHHHHHH-HHHHcccCCHHHHHHHHHHHHHHHhcCh-HHHHHHHHccCcHHHHHHHH-cCCCHHHHHHHHHHHHHHhcC-
Confidence 4567888 788866 78899999999999887653 3455555 489999999999 467889999999999999976
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC--hhhH-HHHHhcCChhhHHhhhcCCC--CHHHHHHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG--PQLR-DYVINMGVVPPLLSFIKPDI--PISFLRNVT 195 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~--~~~r-~~i~~~g~i~~Lv~ll~~~~--~~~~~~~a~ 195 (845)
++++..++..|++|+|+.+|++++.+.++.|+++|.+|+.++ +.++ ..+...|++|.|+.++++.. +..+++.++
T Consensus 89 e~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L~~~Av 168 (2102)
T PLN03200 89 EDLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLT 168 (2102)
T ss_pred HHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHHHHHHH
Confidence 788999999999999999999999999999999999999875 4455 44568999999999998753 234678889
Q ss_pred HHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhh
Q psy12605 196 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ 275 (845)
Q Consensus 196 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 275 (845)
.+|.|||...+.........|++|.++.++.++++. ++..|+++|.+++.+..+.
T Consensus 169 ~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~-------------------------lQ~eAa~aLa~Lass~ee~ 223 (2102)
T PLN03200 169 GALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSD-------------------------AQANAASLLARLMMAFESS 223 (2102)
T ss_pred HHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHHHcCChHH
Confidence 999999998865555556789999999999998888 8999999999998887777
Q ss_pred HHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc---------hhhHHHH
Q psy12605 276 IQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK---------EKICKEA 345 (845)
Q Consensus 276 ~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~---------~~~~~~a 345 (845)
+..+++.|+++.|+++|.+ +++.++..|+.+|+||+.++++.++.+++.|+++.|+.++.+++ ..+++.|
T Consensus 224 ~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~A 303 (2102)
T PLN03200 224 ISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENA 303 (2102)
T ss_pred HHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHH
Confidence 8888999999999999975 45689999999999999999999999999999999999997544 3468999
Q ss_pred HHHHHHhhcCChHHHHH-----------------------H-------------Hh-cCChHHHHHHhhhcccc------
Q psy12605 346 VWFLSNITAGNQAQVQA-----------------------V-------------ID-AGLLPKIIANLQKVGRI------ 382 (845)
Q Consensus 346 ~~~L~nl~~~~~~~~~~-----------------------l-------------~~-~~~i~~Lv~lL~~~~~~------ 382 (845)
.|+|+|+|.+....... + ++ ..+.+.|++++++..+.
T Consensus 304 vwALsNIcgg~~~ll~~L~~ll~s~rd~~~~ada~gALayll~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V 383 (2102)
T PLN03200 304 MGALANICGGMSALILYLGELSESPRSPAPIADTLGALAYALMVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERI 383 (2102)
T ss_pred HHHHHHHhCCchhhHHHHHHhhcccchHHHHHHHHhhHHHHHHhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHH
Confidence 99999998753220000 0 11 11234455555432110
Q ss_pred -------------------------------cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHH
Q psy12605 383 -------------------------------VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 431 (845)
Q Consensus 383 -------------------------------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 431 (845)
..+.++|..++|+|.+++.++.+.++.+.+.|+++.|+++|.+++..++
T Consensus 384 ~eALasl~gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ 463 (2102)
T PLN03200 384 IEALASLYGNAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQ 463 (2102)
T ss_pred HHHHHHhcCChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHH
Confidence 0246899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCC
Q psy12605 432 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 432 ~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~ 511 (845)
..|+|+|++++..+.+.+..+.++|+++.|+++|.+. +.++++.++|+++|++.+...........++++.|..++.+.
T Consensus 464 ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg 542 (2102)
T PLN03200 464 EYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-SQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG 542 (2102)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC
Confidence 9999999999998988999999999999999999865 458999999999999985421111122247999999999999
Q ss_pred ChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccC---CChhhHHHHHhCCccc
Q psy12605 512 DTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP---GTDEQTQVILNCDALS 586 (845)
Q Consensus 512 d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~---~~~~~~~~l~~~~~l~ 586 (845)
+..+... +| +.++....+. ..++.++.++.+++..... .++.+++|+.. +++..++.....|+++
T Consensus 543 d~~~q~~Aa~AL~nLi~~~d~--------~~I~~Lv~LLlsdd~~~~~--~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~ 612 (2102)
T PLN03200 543 GPKGQEIAAKTLTKLVRTADA--------ATISQLTALLLGDLPESKV--HVLDVLGHVLSVASLEDLVREGSAANDALR 612 (2102)
T ss_pred CHHHHHHHHHHHHHHHhccch--------hHHHHHHHHhcCCChhHHH--HHHHHHHHHHhhcchhHHHHHhhhccccHH
Confidence 8888765 67 7777654332 2446788888887765433 36778887744 3333444455789999
Q ss_pred chHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHh
Q psy12605 587 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQN 666 (845)
Q Consensus 587 ~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 666 (845)
.|..+++++++.+++.|+|+|+|++.+++.+++.++..|++|.++.+|
T Consensus 613 ~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LL-------------------------------- 660 (2102)
T PLN03200 613 TLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLL-------------------------------- 660 (2102)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHH--------------------------------
Confidence 999999999999999999999999999999999999999999999998
Q ss_pred hHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhh
Q psy12605 667 VEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDL 746 (845)
Q Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~ 746 (845)
.+++.+++++++|+|.+++..++.++...+++.|++++|+++
T Consensus 661 --------------------------------------ss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~L 702 (2102)
T PLN03200 661 --------------------------------------TNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKL 702 (2102)
T ss_pred --------------------------------------hcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHH
Confidence 567778999999999999977788888888999999999999
Q ss_pred hccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhcCcccCCC
Q psy12605 747 LSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED 819 (845)
Q Consensus 747 L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 819 (845)
|+..|.+++..++.+|.+++..++. ...+.+.|++..|..++.+.+++.++-|.+.|.+......-+|
T Consensus 703 L~~~d~~v~e~Al~ALanLl~~~e~-----~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~ 770 (2102)
T PLN03200 703 AKSSSIEVAEQAVCALANLLSDPEV-----AAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDD 770 (2102)
T ss_pred HhCCChHHHHHHHHHHHHHHcCchH-----HHHHHhcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCCChhH
Confidence 9999999999999999999998874 3556778999999999999999999999999998887776554
|
|
| >PLN03200 cellulose synthase-interactive protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-53 Score=506.40 Aligned_cols=690 Identities=17% Similarity=0.191 Sum_probs=557.1
Q ss_pred hhcHHHHHHHHHcCCC---hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 43 QVNLDMLVVEAARKDN---PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~---~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
...++.++ ..+.+.+ ...+..|+.+|++++...+ .....+++.|++|.|+.+|+ ++++..|..|+++|.+++.+
T Consensus 143 ~GaVp~Lv-~lL~~gsk~d~~L~~~Av~AL~nLs~~~e-n~~~~IIeaGaVp~LV~LLs-S~d~~lQ~eAa~aLa~Lass 219 (2102)
T PLN03200 143 EGVVPSLW-DQLQPGNKQDKVVEGLLTGALRNLCGSTD-GFWSATLEAGGVDILVKLLS-SGNSDAQANAASLLARLMMA 219 (2102)
T ss_pred cCChHHHH-HHHhCCchhhHHHHHHHHHHHHHHhcCcc-chHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHHcC
Confidence 44578888 8888763 3355667889999877653 35577889999999999995 67899999999999999988
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC--------CHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI--------PISF 190 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~--------~~~~ 190 (845)
.++.+..+++.|+||.|+++|+++ ++.+|+.|+|+|+||+.+++++++.+++.|+++.|++++..+. ...+
T Consensus 220 ~ee~~~aVIeaGaVP~LV~LL~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~L 299 (2102)
T PLN03200 220 FESSISKVLDAGAVKQLLKLLGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQAL 299 (2102)
T ss_pred ChHHHHHHHHCCCHHHHHHHHccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHH
Confidence 788999999999999999999864 5699999999999999999999999999999999999997432 3467
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC-CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh-
Q psy12605 191 LRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH-DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL- 268 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l- 268 (845)
+++|+|+|+|+|.+. ..+++.|..++.+. |.. ...+++|++.|+
T Consensus 300 qe~AvwALsNIcgg~---------~~ll~~L~~ll~s~rd~~-------------------------~~ada~gALayll 345 (2102)
T PLN03200 300 QENAMGALANICGGM---------SALILYLGELSESPRSPA-------------------------PIADTLGALAYAL 345 (2102)
T ss_pred HHHHHHHHHHHhCCc---------hhhHHHHHHhhcccchHH-------------------------HHHHHHhhHHHHH
Confidence 999999999999875 46889999888764 444 778999999998
Q ss_pred --hcCChhhHHHHHhcCchhhHHhhccCCchh-hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHH
Q psy12605 269 --TDGGNDQIQMVIDSGVVPSLIPLLSHKEVK-VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345 (845)
Q Consensus 269 --~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a 345 (845)
.+.+.+..+.+-...+++.|+.+++++++. ++..+..+|..+. ++...++.+.+.++++.|+.++...+.+++..+
T Consensus 346 ~l~d~~~~~~~~i~~~~v~~~LV~Llr~k~p~~vqe~V~eALasl~-gN~~l~~~L~~~daik~LV~LL~~~~~evQ~~A 424 (2102)
T PLN03200 346 MVFDSSAESTRAFDPTVIEQILVKLLKPRDTKLVQERIIEALASLY-GNAYLSRKLNHAEAKKVLVGLITMATADVQEEL 424 (2102)
T ss_pred HhcCCchhhhhhccccccHHHHHHHhCCCCCchhHHHHHHHHHHhc-CChHHHHHHHhccchhhhhhhhccCCHHHHHHH
Confidence 445544444332235669999999888666 4888899998874 557777888889999999999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 346 ~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
+|+|++++.++.+.++.+.+.|++|.|+++|.++ +..+|..|+|++++++.++.+.+..+++.|++|.|+++|.+
T Consensus 425 v~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~-----s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s 499 (2102)
T PLN03200 425 IRALSSLCCGKGGLWEALGGREGVQLLISLLGLS-----SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLET 499 (2102)
T ss_pred HHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999984 78999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHH
Q psy12605 426 PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALN 505 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~ 505 (845)
++..+++.|+|+|+|++.++++.+..+.++|+++.|+++|++. +.+.++.++|+|.|+..+.. .+.++.+.
T Consensus 500 ~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sg-d~~~q~~Aa~AL~nLi~~~d--------~~~I~~Lv 570 (2102)
T PLN03200 500 GSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNG-GPKGQEIAAKTLTKLVRTAD--------AATISQLT 570 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhccc--------hhHHHHHH
Confidence 9999999999999999999889999999999999999999876 45889999999999987653 23457778
Q ss_pred HhhcCCChhHHHHHH--HHhhhc---CchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHH
Q psy12605 506 ILIHHHDTSVSIYLW--LSIIEK---NPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVIL 580 (845)
Q Consensus 506 ~ll~~~d~~v~~~~~--l~~l~~---~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~ 580 (845)
.++.+.++.+...+. +..+.. ..+.........+.++.|++++.+++..+ +..+..++.++..+...+.+.++
T Consensus 571 ~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~i--kk~Aa~iLsnL~a~~~d~~~avv 648 (2102)
T PLN03200 571 ALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEET--QEKAASVLADIFSSRQDLCESLA 648 (2102)
T ss_pred HHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCCHHH--HHHHHHHHHHHhcCChHHHHHHH
Confidence 888888888777654 444322 22222222335689999999999987654 44467899999999999999999
Q ss_pred hCCcccchHHhhcCCChhHHHHHHHHHhhhccC-CHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHH
Q psy12605 581 NCDALSHFPALLTHPKEKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQ 659 (845)
Q Consensus 581 ~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (845)
..|+++.++.++.+.+.+++++++|+|+|++.+ .+.++..+++.|++|.|+++|...+.+.. ...
T Consensus 649 ~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~--------------e~A 714 (2102)
T PLN03200 649 TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVA--------------EQA 714 (2102)
T ss_pred HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHH--------------HHH
Confidence 999999999999999999999999999999964 44555677899999999999954322111 111
Q ss_pred HHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHH-H-HHHHHc
Q psy12605 660 MSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQ-V-AKLVQE 737 (845)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~-~-~~l~~~ 737 (845)
+..+.....+.-.. ..+..+|++ ..++.++.+++++.|+.|+|+|.++|...+.++ . ..+...
T Consensus 715 l~ALanLl~~~e~~--------~ei~~~~~I-------~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~ 779 (2102)
T PLN03200 715 VCALANLLSDPEVA--------AEALAEDII-------LPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCR 779 (2102)
T ss_pred HHHHHHHHcCchHH--------HHHHhcCcH-------HHHHHHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHh
Confidence 11111111100000 001111221 112344589999999999999999997666655 3 455588
Q ss_pred CCchHHhhhhccccHHHHHH--HHHHHHHHHHhhHHH---HHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhc
Q psy12605 738 GVIPPFCDLLSCKDAQVIQV--VLDGINNMLKMADAQ---VETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812 (845)
Q Consensus 738 ~~i~~L~~~L~~~d~~~~~~--al~~L~~l~~~~~~~---~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 812 (845)
|.+.+|+++|+..|.+.... ++++|..+.+..+.. .+++...++..+.+++|...+.++++.++++|.++|+++-
T Consensus 780 g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~ 859 (2102)
T PLN03200 780 GTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLC 859 (2102)
T ss_pred CcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 99999999999988887776 999999999975442 2457778899999999976669999999999999999987
Q ss_pred Ccc
Q psy12605 813 SEV 815 (845)
Q Consensus 813 ~~~ 815 (845)
+..
T Consensus 860 ~~~ 862 (2102)
T PLN03200 860 RDQ 862 (2102)
T ss_pred ccC
Confidence 654
|
|
| >COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-46 Score=364.37 Aligned_cols=303 Identities=45% Similarity=0.701 Sum_probs=279.7
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHh-hcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNI-TAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl-~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
-+|.+.+-|.+.|-+.+..|..-+..+ +....+.++.++++|++|.++++|... ...-++.+|+|+|.|++++..
T Consensus 72 elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~----q~~mlqfEAaWalTNiaSGtt 147 (526)
T COG5064 72 ELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEI----QRDMLQFEAAWALTNIASGTT 147 (526)
T ss_pred hhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhc----chhHHHHHHHHHHhhhccCcc
Confidence 457788888888877777777766664 344556678999999999999999765 477889999999999999999
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCC-ChhHHHHHHHHHHH
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVN 483 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~~~~~~~l~n 483 (845)
...+.+++.|++|.|+++|.+++.+|+++++|+|+|++++++.+|+.++++|++++++.++.+.. ...+.|++.|+|+|
T Consensus 148 ~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSN 227 (526)
T COG5064 148 QQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSN 227 (526)
T ss_pred cceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999987544 47899999999999
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHH-HHHH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccc
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVS-IYLW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~-~~~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 561 (845)
|||++.|+|+...+...+|.|..|+.+.|+++. ++|| ++||++++...+..+.+.|+.++|+++|.|++..+ +.++
T Consensus 228 lcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~i--qtPa 305 (526)
T COG5064 228 LCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKI--QTPA 305 (526)
T ss_pred hhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccc--cCHH
Confidence 999999999999999999999999999999976 5599 99999999999999999999999999999988877 4568
Q ss_pred ccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHh
Q psy12605 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 634 (845)
Q Consensus 562 l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll 634 (845)
++.++|+..|++.+++.++++|+++++..+|++++..++++|||+|+|+++++.++++.+++.+++|.|+.+|
T Consensus 306 lR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~ll 378 (526)
T COG5064 306 LRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLL 378 (526)
T ss_pred HHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998
|
|
| >KOG0166|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=358.05 Aligned_cols=372 Identities=35% Similarity=0.566 Sum_probs=327.0
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCC-hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGN-QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
.+.++..+.+.+...+..+...+..+.+.. .+.+..++..|++|.+|++|... .++.++.+|+|+|.|+++++++
T Consensus 68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~----~~~~lq~eAAWaLTnIAsgtse 143 (514)
T KOG0166|consen 68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRD----DNPTLQFEAAWALTNIASGTSE 143 (514)
T ss_pred hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccC----CChhHHHHHHHHHHHHhcCchh
Confidence 566777788888888888888888775532 24557777789999999999875 5799999999999999999999
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
..+.+++.|+++.|++++.+++.+|+++|+|+|+|++++++.+|+.++++|++++|+.++.......+.|+++|+++|||
T Consensus 144 ~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlc 223 (514)
T KOG0166|consen 144 QTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLC 223 (514)
T ss_pred hccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998887889999999999999
Q ss_pred cCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccccc
Q psy12605 486 RNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHS 563 (845)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~ 563 (845)
+++.|.+++..+..++|.|..++++.|++|... || ++||+++++..+.++.+.|++++|+.+|.+
T Consensus 224 rgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~------------- 290 (514)
T KOG0166|consen 224 RGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGH------------- 290 (514)
T ss_pred cCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcC-------------
Confidence 999999999999999999999999999999765 89 999999888777666666666655555554
Q ss_pred ccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhh
Q psy12605 564 IYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILN 643 (845)
Q Consensus 564 ~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~ 643 (845)
+++.++..|+.+++|++.|++.+.+.++++|++|.|..++.
T Consensus 291 -------------------------------~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~-------- 331 (514)
T KOG0166|consen 291 -------------------------------SSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLS-------- 331 (514)
T ss_pred -------------------------------CCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhc--------
Confidence 44455667888888989999999999999999999998883
Q ss_pred hcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhc
Q psy12605 644 KYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT 723 (845)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~ 723 (845)
.+....+|++|||++.|++
T Consensus 332 -------------------------------------------------------------~s~~~~ikkEAcW~iSNIt 350 (514)
T KOG0166|consen 332 -------------------------------------------------------------SSPKESIKKEACWTISNIT 350 (514)
T ss_pred -------------------------------------------------------------cCcchhHHHHHHHHHHHhh
Confidence 3555569999999999999
Q ss_pred ccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHH
Q psy12605 724 ISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKL 803 (845)
Q Consensus 724 ~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~ 803 (845)
.|++++.++++++|+++.|+.+|+..+.++++-|.|++.|+...+... -..++-+.|.++.+.+|+.-.+..+...
T Consensus 351 -AG~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~---qi~yLv~~giI~plcdlL~~~D~~ii~v 426 (514)
T KOG0166|consen 351 -AGNQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPE---QIKYLVEQGIIKPLCDLLTCPDVKIILV 426 (514)
T ss_pred -cCCHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHH---HHHHHHHcCCchhhhhcccCCChHHHHH
Confidence 799999999999999999999999999999999999999999877643 3567889999999999998889889999
Q ss_pred HHHHHHHhcCcccCCC
Q psy12605 804 AYDIIERYFSEVEDED 819 (845)
Q Consensus 804 a~~~l~~~~~~~~~~~ 819 (845)
+.+.++.++..-+.+-
T Consensus 427 ~Ld~l~nil~~~e~~~ 442 (514)
T KOG0166|consen 427 ALDGLENILKVGEAEK 442 (514)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999998886665444
|
|
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.8e-30 Score=251.51 Aligned_cols=475 Identities=21% Similarity=0.276 Sum_probs=372.7
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i 169 (845)
+..+ ..|+.+++-..+..|+-+...+... ... -+.....+++.-+++++++.++..+..++||++-. .+++..+
T Consensus 49 lral-tvL~ySDnlnlqrsaalafAeitek---~vr-~Vsres~epvl~llqs~d~~Iq~aa~~alGnlAVn-~enk~li 122 (550)
T KOG4224|consen 49 LRAL-TVLKYSDNLNLQRSAALAFAEITEK---GVR-RVSRESNEPVLALLQSCDKCIQCAAGEALGNLAVN-MENKGLI 122 (550)
T ss_pred cchh-eeeeeccccccchHHHHHHHHHHHH---HHH-HhhhhhhhHHHHHHhCcchhhhhhhhhhhccceec-cCCceEE
Confidence 4443 3445678888888888887777532 222 23446888999999999999999999999999954 4577777
Q ss_pred HhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHH
Q psy12605 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 249 (845)
Q Consensus 170 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~ 249 (845)
++.+++++|+.-+..+ ...++.
T Consensus 123 v~l~Gl~~Li~qmmtd-~vevqc--------------------------------------------------------- 144 (550)
T KOG4224|consen 123 VSLLGLDLLILQMMTD-GVEVQC--------------------------------------------------------- 144 (550)
T ss_pred EeccChHHHHHHhcCC-CcEEEe---------------------------------------------------------
Confidence 7777877776544433 123333
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccch
Q psy12605 250 ILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329 (845)
Q Consensus 250 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~ 329 (845)
.+..|+.+++..+++ +-.+...|++.++..+-++++..++.++.++|.|++.. .+.++.++..|++|.
T Consensus 145 ----------naVgCitnLaT~d~n-k~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs-~EnRr~LV~aG~lpv 212 (550)
T KOG4224|consen 145 ----------NAVGCITNLATFDSN-KVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHS-RENRRVLVHAGGLPV 212 (550)
T ss_pred ----------eehhhhhhhhccccc-hhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhh-hhhhhhhhccCCchh
Confidence 444444444444322 34456889999999988899999999999999999654 667888999999999
Q ss_pred hhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcC--ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH
Q psy12605 330 FPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG--LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT 407 (845)
Q Consensus 330 L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~--~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (845)
|+.++++++.+++..++.+++|++.. ...++.+.+.+ ++|.|+.++.++ ++.+|..|..+|.++++.. ++.
T Consensus 213 LVsll~s~d~dvqyycttaisnIaVd-~~~Rk~Laqaep~lv~~Lv~Lmd~~-----s~kvkcqA~lALrnlasdt-~Yq 285 (550)
T KOG4224|consen 213 LVSLLKSGDLDVQYYCTTAISNIAVD-RRARKILAQAEPKLVPALVDLMDDG-----SDKVKCQAGLALRNLASDT-EYQ 285 (550)
T ss_pred hhhhhccCChhHHHHHHHHhhhhhhh-HHHHHHHHhcccchHHHHHHHHhCC-----ChHHHHHHHHHHhhhcccc-hhh
Confidence 99999999999999999999999554 55567777766 999999999985 8999999999999998754 688
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 408 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 408 ~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
..+++.|++|.++++++++........+.|+.|++.+.- ..-.+.+.|.+.+|+++|...++++++.+++.+++||+..
T Consensus 286 ~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAas 364 (550)
T KOG4224|consen 286 REIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAAS 364 (550)
T ss_pred hHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhh
Confidence 899999999999999999998899999999999997643 3456789999999999999988889999999999998753
Q ss_pred CCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccccccccc
Q psy12605 488 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMC 567 (845)
Q Consensus 488 ~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~n 567 (845)
..
T Consensus 365 se------------------------------------------------------------------------------ 366 (550)
T KOG4224|consen 365 SE------------------------------------------------------------------------------ 366 (550)
T ss_pred hh------------------------------------------------------------------------------
Confidence 31
Q ss_pred ccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhccc
Q psy12605 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLD 647 (845)
Q Consensus 568 l~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~ 647 (845)
.....+.+.|++|.++.++-+..-+++.+.-.+++-++.+ +.....+.+.|++|.|+..+
T Consensus 367 ------~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~-d~~k~~lld~gi~~iLIp~t------------- 426 (550)
T KOG4224|consen 367 ------HNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALN-DNDKEALLDSGIIPILIPWT------------- 426 (550)
T ss_pred ------hhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhc-cccHHHHhhcCCcceeeccc-------------
Confidence 1225677888999999999888889999999999988754 44467889999999988655
Q ss_pred CCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCC
Q psy12605 648 NNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGN 727 (845)
Q Consensus 648 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~ 727 (845)
.+.+.+++-.|+.+|+|++ .+
T Consensus 427 ---------------------------------------------------------~s~s~Ev~gNaAaAL~Nls--s~ 447 (550)
T KOG4224|consen 427 ---------------------------------------------------------GSESEEVRGNAAAALINLS--SD 447 (550)
T ss_pred ---------------------------------------------------------CccchhhcccHHHHHHhhh--hh
Confidence 5677899999999999998 56
Q ss_pred HHHHHHHHHc------CCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHH
Q psy12605 728 RDQVAKLVQE------GVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIY 801 (845)
Q Consensus 728 ~~~~~~l~~~------~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~ 801 (845)
.++...+++. |.-..|++++.+++-.+...+.+.+..|++.++. ++..+..+.+. +.
T Consensus 448 v~~YarviEawd~P~~gi~g~L~Rfl~S~~~tf~hia~wTI~qLle~h~~----------------~~~~~i~~~dd-ii 510 (550)
T KOG4224|consen 448 VEHYARVIEAWDHPVQGIQGRLARFLASHELTFRHIARWTIQQLLEDHDL----------------PLTAFIQSSDD-II 510 (550)
T ss_pred hHHHHHHHHHhcCcchhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCCc----------------cHHHHHhCchh-HH
Confidence 7777777654 5566788999999999999999999999876653 34444433333 55
Q ss_pred HHHHHHHHHhcCcccCCCCCC
Q psy12605 802 KLAYDIIERYFSEVEDEDNLG 822 (845)
Q Consensus 802 ~~a~~~l~~~~~~~~~~~~~~ 822 (845)
+.+..+++|.-..-+++|+.|
T Consensus 511 ~~~~~~~~r~~~~g~~~~~~g 531 (550)
T KOG4224|consen 511 ELLNDIVARDANNGEYEDGEG 531 (550)
T ss_pred HHHHHHHHHhccCCcccCCCC
Confidence 777788887665555555443
|
|
| >KOG4224|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.9e-29 Score=243.97 Aligned_cols=361 Identities=19% Similarity=0.245 Sum_probs=313.5
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
...+..-++ .+.++.++..+..++++++- +.+++-.+++.+++.+|+.-+.++..++|..++.|++|++.. .+++..
T Consensus 86 s~epvl~ll-qs~d~~Iq~aa~~alGnlAV-n~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~-d~nk~k 162 (550)
T KOG4224|consen 86 SNEPVLALL-QSCDKCIQCAAGEALGNLAV-NMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATF-DSNKVK 162 (550)
T ss_pred hhhHHHHHH-hCcchhhhhhhhhhhcccee-ccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhcc-ccchhh
Confidence 455556666 46788999999999999996 467888899999999999999999999999999999999977 579999
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
+...|++.++++ |.+..+..+++++..+|.|+....+..+. ....|.+|.|+.++.+.|++
T Consensus 163 iA~sGaL~pltr-LakskdirvqrnatgaLlnmThs~EnRr~-LV~aG~lpvLVsll~s~d~d----------------- 223 (550)
T KOG4224|consen 163 IARSGALEPLTR-LAKSKDIRVQRNATGALLNMTHSRENRRV-LVHAGGLPVLVSLLKSGDLD----------------- 223 (550)
T ss_pred hhhccchhhhHh-hcccchhhHHHHHHHHHHHhhhhhhhhhh-hhccCCchhhhhhhccCChh-----------------
Confidence 999999999999 54445789999999999999998865444 45789999999999999999
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC--chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG--VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g--~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~ 326 (845)
++.+++.++.+++-.... ++.+++.+ +++.|+.++.+++++++..|..+|+|++...+. +..+.+.|.
T Consensus 224 --------vqyycttaisnIaVd~~~-Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Y-q~eiv~ag~ 293 (550)
T KOG4224|consen 224 --------VQYYCTTAISNIAVDRRA-RKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEY-QREIVEAGS 293 (550)
T ss_pred --------HHHHHHHHhhhhhhhHHH-HHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchh-hhHHHhcCC
Confidence 999999999999865444 45666777 999999999999999999999999999877544 556889999
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
+|.+++++.++.-....+...|+.|++-+.- ....+++.|++.+|+.+|... ++.++|..|..+|.+++..+...
T Consensus 294 lP~lv~Llqs~~~plilasVaCIrnisihpl-Ne~lI~dagfl~pLVrlL~~~----dnEeiqchAvstLrnLAasse~n 368 (550)
T KOG4224|consen 294 LPLLVELLQSPMGPLILASVACIRNISIHPL-NEVLIADAGFLRPLVRLLRAG----DNEEIQCHAVSTLRNLAASSEHN 368 (550)
T ss_pred chHHHHHHhCcchhHHHHHHHHHhhcccccC-cccceecccchhHHHHHHhcC----CchhhhhhHHHHHHHHhhhhhhh
Confidence 9999999998888888888999999977643 335678899999999999987 68889999999999999988899
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
.+.++++|+++.+..++.+....++.....|+..++... ..+..+.++|+++.|+.++.+.+ .+++-+++.++.|+|.
T Consensus 369 ~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d-~~k~~lld~gi~~iLIp~t~s~s-~Ev~gNaAaAL~Nlss 446 (550)
T KOG4224|consen 369 VSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALND-NDKEALLDSGIIPILIPWTGSES-EEVRGNAAAALINLSS 446 (550)
T ss_pred hHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhcc-ccHHHHhhcCCcceeecccCccc-hhhcccHHHHHHhhhh
Confidence 999999999999999999999999999999999988754 46889999999999999987654 5888889999999885
Q ss_pred CC
Q psy12605 487 NK 488 (845)
Q Consensus 487 ~~ 488 (845)
..
T Consensus 447 ~v 448 (550)
T KOG4224|consen 447 DV 448 (550)
T ss_pred hh
Confidence 44
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-21 Score=219.95 Aligned_cols=511 Identities=16% Similarity=0.224 Sum_probs=368.8
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH-cCChHHHHHhhCC---CChhHHHHHHHHHHHhcCCChh
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMS---PHSNVCEQAVWALGNIIGDGPQ 164 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~g~i~~L~~lL~s---~~~~v~~~a~~~L~nla~~~~~ 164 (845)
=++..+++|- ++. ..+..++..+..||.. +++-..++. .-++..|.+.|.. .+.++....+.+...++..+ +
T Consensus 124 ~~d~yiE~lY-e~~-~ek~~~~~~il~La~~-~~NL~~l~~ne~l~~aL~RvLred~~ks~~l~tnI~~iF~~fS~f~-~ 199 (708)
T PF05804_consen 124 DLDEYIELLY-EDI-PEKIRGTSLILQLARN-PENLEELVQNETLMSALARVLREDWKKSVELATNIIYIFFCFSNFS-Q 199 (708)
T ss_pred HHHHHHHHHh-ccc-HHHHHHHHHHHHHhCC-cchHHHHHHhHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhHH-H
Confidence 3667788884 444 4478888999999975 777777665 5678888888855 36677777888888887543 3
Q ss_pred hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC--C-CCChhHHhhHHHHHHhhcccCCchhhHHHHHHHh
Q psy12605 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD--P-PPSMSTIIELLPALNILIHHHDTSVSIYLWLSII 241 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~ 241 (845)
+-..+....+-...++++.. ++++.-.|.=.-..+... . +............+-.++...
T Consensus 200 fH~~l~~~kiG~l~m~iie~----Elkr~~~w~~~l~~~~~~~~~~~~~~~~~~~~~kk~~~l~~kQ------------- 262 (708)
T PF05804_consen 200 FHPILAHYKIGSLCMEIIEH----ELKRHDLWQEELRKKKKAAEEKPEAKKDYEKELKKLQTLIRKQ------------- 262 (708)
T ss_pred HHHHHHhccHHHHHHHHHHH----HHHHHHHHHHHHHhhhhhhccchhhhhhHHHHHHHHHHHHHHH-------------
Confidence 55555544333334455543 466655553211111100 0 000001111222222222222
Q ss_pred hhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHH
Q psy12605 242 EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVI 321 (845)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i 321 (845)
..+...++..|.++++...... .+.+.|+++.|+.+|+.++.++...++.+|.+|+.. .+.+..+
T Consensus 263 -------------eqLlrv~~~lLlNLAed~~ve~-kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m 327 (708)
T PF05804_consen 263 -------------EQLLRVAFYLLLNLAEDPRVEL-KMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEM 327 (708)
T ss_pred -------------HHHHHHHHHHHHHHhcChHHHH-HHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHH
Confidence 2255677888999998765544 456999999999999999999999999999999876 4568889
Q ss_pred hcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc
Q psy12605 322 LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401 (845)
Q Consensus 322 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~ 401 (845)
.+.|+++.|.+++.+++.+++..++.+|.|++. +++.+..+++.|++|.|+.++.+ +..+..+..+|.+++.
T Consensus 328 ~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf-d~~~R~~mV~~GlIPkLv~LL~d-------~~~~~val~iLy~LS~ 399 (708)
T PF05804_consen 328 AESGIVEKLLKLLPSENEDLVNVALRLLFNLSF-DPELRSQMVSLGLIPKLVELLKD-------PNFREVALKILYNLSM 399 (708)
T ss_pred HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc-CHHHHHHHHHCCCcHHHHHHhCC-------CchHHHHHHHHHHhcc
Confidence 999999999999999999999999999999954 56778999999999999999965 3455668888888877
Q ss_pred CChHhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHH
Q psy12605 402 GTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWV 480 (845)
Q Consensus 402 ~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~ 480 (845)
. .+.+..+...++++.+++++.+ +++.+...+++.+.|++.+.... +.+.+.|+++.|++..-+..+ .....+
T Consensus 400 d-d~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rna-qlm~~g~gL~~L~~ra~~~~D----~lLlKl 473 (708)
T PF05804_consen 400 D-DEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNA-QLMCEGNGLQSLMKRALKTRD----PLLLKL 473 (708)
T ss_pred C-HhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHH-HHHHhcCcHHHHHHHHHhccc----HHHHHH
Confidence 4 4667788888999999997654 66778888899999999877554 677788899999977644333 123346
Q ss_pred HHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccc
Q psy12605 481 IVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKK 560 (845)
Q Consensus 481 l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~ 560 (845)
++|++.+.++.. ....+
T Consensus 474 IRNiS~h~~~~k--~~f~~------------------------------------------------------------- 490 (708)
T PF05804_consen 474 IRNISQHDGPLK--ELFVD------------------------------------------------------------- 490 (708)
T ss_pred HHHHHhcCchHH--HHHHH-------------------------------------------------------------
Confidence 777776652100 01111
Q ss_pred cccccccccCCChhhHHHHHhCCcccchHHhhcC-CChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhh
Q psy12605 561 QHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSC 639 (845)
Q Consensus 561 ~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 639 (845)
++..|..++.. .+++..-+++++|+|+...+....+.+.+.+++|.+.++|..
T Consensus 491 -----------------------~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~--- 544 (708)
T PF05804_consen 491 -----------------------FIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKP--- 544 (708)
T ss_pred -----------------------HHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCC---
Confidence 12222233333 356788899999999997766666666678999999998842
Q ss_pred hhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHH
Q psy12605 640 KILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAI 719 (845)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 719 (845)
...++++.-+++.++
T Consensus 545 -----------------------------------------------------------------g~~~dDl~LE~Vi~~ 559 (708)
T PF05804_consen 545 -----------------------------------------------------------------GASEDDLLLEVVILL 559 (708)
T ss_pred -----------------------------------------------------------------CCCChHHHHHHHHHH
Confidence 334557899999999
Q ss_pred HhhcccCCHHHHHHHHHcCCchHHhhhhcc--ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCC
Q psy12605 720 SNLTISGNRDQVAKLVQEGVIPPFCDLLSC--KDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHEN 797 (845)
Q Consensus 720 ~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~--~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~ 797 (845)
+.++ .+++-...+++.|.++.|+.+|.. .|.+++.+.+.+++.++.+.+.. ...+.+.+++..|.+++++.|
T Consensus 560 gtla--~d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr----~~ll~~~~~~~ylidL~~d~N 633 (708)
T PF05804_consen 560 GTLA--SDPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETR----EVLLKETEIPAYLIDLMHDKN 633 (708)
T ss_pred HHHH--CCHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHH----HHHHhccchHHHHHHHhcCCC
Confidence 9998 577777788899999999999987 58899999999999999987653 356688999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy12605 798 VEIYKLAYDIIE 809 (845)
Q Consensus 798 ~~v~~~a~~~l~ 809 (845)
.++++.|...|.
T Consensus 634 ~~ir~~~d~~Ld 645 (708)
T PF05804_consen 634 AEIRKVCDNALD 645 (708)
T ss_pred HHHHHHHHHHHH
Confidence 999887655554
|
|
| >PF05804 KAP: Kinesin-associated protein (KAP) | Back alignment and domain information |
|---|
Probab=99.91 E-value=4e-21 Score=216.50 Aligned_cols=386 Identities=17% Similarity=0.256 Sum_probs=307.0
Q ss_pred ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH
Q psy12605 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137 (845)
Q Consensus 58 ~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~ 137 (845)
.......++..|.++.... .....+.+.|+++.|+.+|+ .++.++...++.+|.+|+-. .+++..+.+.|+|+.|+
T Consensus 262 QeqLlrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ld-r~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~ 337 (708)
T PF05804_consen 262 QEQLLRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLD-RENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLL 337 (708)
T ss_pred HHHHHHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHH
Confidence 3444456666677765433 34567889999999999995 56789999999999999865 78999999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhH
Q psy12605 138 RLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL 217 (845)
Q Consensus 138 ~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~ 217 (845)
+++.+++.+++..++++|.|++.+ ++.|..+++.|++|.|+.++..+ ..+..+..+|.+++.+.+ ...+....++
T Consensus 338 kLl~s~~~~l~~~aLrlL~NLSfd-~~~R~~mV~~GlIPkLv~LL~d~---~~~~val~iLy~LS~dd~-~r~~f~~Tdc 412 (708)
T PF05804_consen 338 KLLPSENEDLVNVALRLLFNLSFD-PELRSQMVSLGLIPKLVELLKDP---NFREVALKILYNLSMDDE-ARSMFAYTDC 412 (708)
T ss_pred HHhcCCCHHHHHHHHHHHHHhCcC-HHHHHHHHHCCCcHHHHHHhCCC---chHHHHHHHHHHhccCHh-hHHHHhhcch
Confidence 999999999999999999999955 67999999999999999999865 466779999999999874 4455566789
Q ss_pred HHHHHhhccc-CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCc
Q psy12605 218 LPALNILIHH-HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296 (845)
Q Consensus 218 l~~L~~ll~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 296 (845)
+|.+++++.. +++. +...+.+.+.+++....+ .+.+++.++++.|+...-...
T Consensus 413 Ip~L~~~Ll~~~~~~-------------------------v~~eliaL~iNLa~~~rn-aqlm~~g~gL~~L~~ra~~~~ 466 (708)
T PF05804_consen 413 IPQLMQMLLENSEEE-------------------------VQLELIALLINLALNKRN-AQLMCEGNGLQSLMKRALKTR 466 (708)
T ss_pred HHHHHHHHHhCCCcc-------------------------ccHHHHHHHHHHhcCHHH-HHHHHhcCcHHHHHHHHHhcc
Confidence 9999997654 4554 556678888888876544 577888889999988874433
Q ss_pred hhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHH
Q psy12605 297 VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375 (845)
Q Consensus 297 ~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~l 375 (845)
.. ..++.++|++.+++..+..+. +.+..|+.++.. .+++...+++++|+|+...+.+..+.+.+.+++|.|...
T Consensus 467 D~---lLlKlIRNiS~h~~~~k~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~ 541 (708)
T PF05804_consen 467 DP---LLLKLIRNISQHDGPLKELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDL 541 (708)
T ss_pred cH---HHHHHHHHHHhcCchHHHHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHH
Confidence 32 245799999988765555444 477777888866 468899999999999987766665555668999999999
Q ss_pred hhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 376 LQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQLRDYVI 453 (845)
Q Consensus 376 L~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 453 (845)
|..+. ..+++..+++..++.++. ++.....+.+.|.++.|+.++.+ ++.++..+.++++.++..+.+.....+.
T Consensus 542 L~~g~---~~dDl~LE~Vi~~gtla~-d~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~ 617 (708)
T PF05804_consen 542 LKPGA---SEDDLLLEVVILLGTLAS-DPECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLK 617 (708)
T ss_pred hCCCC---CChHHHHHHHHHHHHHHC-CHHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHh
Confidence 98664 467899999999998875 66788888999999999999986 5688999999999999999765554445
Q ss_pred hCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 454 NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 454 ~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+.++...|+.++++.. .++++.|-.+|.-++...
T Consensus 618 ~~~~~~ylidL~~d~N-~~ir~~~d~~Ldii~e~d 651 (708)
T PF05804_consen 618 ETEIPAYLIDLMHDKN-AEIRKVCDNALDIIAEYD 651 (708)
T ss_pred ccchHHHHHHHhcCCC-HHHHHHHHHHHHHHHHhC
Confidence 6788888889887654 477777766666665433
|
|
| >KOG1048|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.2e-18 Score=189.20 Aligned_cols=395 Identities=19% Similarity=0.222 Sum_probs=279.4
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
+.+.++++.+ .+|.+.++..|-.|...+.+++... +..+..+.+.|.|+.||.+| .+.+++++.+|+++|.||..++
T Consensus 230 w~d~~lpe~i-~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll-~~~~~evq~~acgaLRNLvf~~ 306 (717)
T KOG1048|consen 230 WRDPTLPEVI-SMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALL-DHRNDEVQRQACGALRNLVFGK 306 (717)
T ss_pred ccccccHHHH-HHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHh-cCCcHHHHHHHHHHHHhhhccc
Confidence 5677899999 9999999999999999999886644 55667888999999999999 5788999999999999999876
Q ss_pred hh--hHHHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc--------CCCC--
Q psy12605 121 SA--QTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--------PDIP-- 187 (845)
Q Consensus 121 ~~--~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~--------~~~~-- 187 (845)
.. ++-++.+.++|+.++++|.. .|.++++....+|+||++. +.++..++.. ++..|.+-+- ++.+
T Consensus 307 ~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~-D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~ 384 (717)
T KOG1048|consen 307 STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSN-DALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRK 384 (717)
T ss_pred CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccch-hHHHHHHHHH-HHHHHHHhhcccccccCCCCcccc
Confidence 55 88899999999999999986 6899999999999999965 4566655543 4555554432 1212
Q ss_pred ---HHHHHHHHHHHHHhhcC-CCCCCChhHHhhHHHHHHhhccc------CCch---hhHHHHHHHhhhC----hh-hHH
Q psy12605 188 ---ISFLRNVTWVIVNLCRN-KDPPPSMSTIIELLPALNILIHH------HDTS---VSIYLWLSIIEKN----PQ-ISK 249 (845)
Q Consensus 188 ---~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~l~~L~~ll~~------~~~~---~~~~~~~~l~~~~----~~-~~~ 249 (845)
.++..+++.+|.|++.. .+..+.+....|.+..|+..+.+ .|.. .-++.++++...- |+ ..+
T Consensus 385 ~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~ 464 (717)
T KOG1048|consen 385 AEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQ 464 (717)
T ss_pred cccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhh
Confidence 57888999999999984 34444555566888888776652 1221 2222222221100 00 000
Q ss_pred hhhh-h----HHHHHHHHHHHHHhhcC---------------ChhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHH
Q psy12605 250 ILVS-K----MKILVDTVWALSYLTDG---------------GNDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVG 308 (845)
Q Consensus 250 ~~~~-~----~~~~~~a~~~L~~l~~~---------------~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~ 308 (845)
..-. + .+-......|.....+. .+...+++....++..-..+| .+.+..+.++++++|.
T Consensus 465 ~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQ 544 (717)
T KOG1048|consen 465 VLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQ 544 (717)
T ss_pred HhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHh
Confidence 0000 0 00000000001100000 000112233334555545555 4567889999999999
Q ss_pred HHhcCCh----hhHHHH-hcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc-
Q psy12605 309 NIVTGTD----EQTQVI-LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI- 382 (845)
Q Consensus 309 nl~~~~~----~~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~- 382 (845)
|++.+.. ..+..+ ....+++.|+.+|..+++.+...++.+|.|++.+... +.++...+++.|+..|.....+
T Consensus 545 NltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rn--k~ligk~a~~~lv~~Lp~~~~~~ 622 (717)
T KOG1048|consen 545 NLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRN--KELIGKYAIPDLVRCLPGSGPST 622 (717)
T ss_pred hhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchh--hhhhhcchHHHHHHhCcCCCCCc
Confidence 9997653 344444 6778999999999999999999999999999766432 5566689999999999887531
Q ss_pred cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCC-HHHHHHHHHHHHHhh
Q psy12605 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPH-SNVCEQAVWALGNII 442 (845)
Q Consensus 383 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~-~~v~~~a~~~L~nl~ 442 (845)
..+.++...+|.+|.++...+....+.+.+.++++.|+.+..+.. +.+.++|...|..|=
T Consensus 623 ~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW 683 (717)
T KOG1048|consen 623 SLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLW 683 (717)
T ss_pred CchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHH
Confidence 134788999999999999999999999999999999999998754 466777666666554
|
|
| >KOG1048|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-17 Score=181.19 Aligned_cols=411 Identities=15% Similarity=0.182 Sum_probs=297.2
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH--HHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA--QVQ 361 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--~~~ 361 (845)
-++..+.+|.+.++.++..|...+..+|.++...+..+.+.|+++.|+.+|.+...++++.||++|.|+..+... ..-
T Consensus 234 ~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~~NKl 313 (717)
T KOG1048|consen 234 TLPEVISMLMSQDPSVQSNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTDSNKL 313 (717)
T ss_pred ccHHHHHHHhccChhhhHHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCcccch
Confidence 356778888999999999999999999999999999999999999999999999999999999999999987666 666
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC--------------C
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--------------H 427 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~--------------~ 427 (845)
.+.+.++++.++++++.. .+.+++..+..+|+||.+.+ ..+..+-..++..|...+-.+ .
T Consensus 314 ai~~~~Gv~~l~~~Lr~t----~D~ev~e~iTg~LWNLSS~D--~lK~~ii~~al~tLt~~vI~P~Sgw~~~~~~~~~~~ 387 (717)
T KOG1048|consen 314 AIKELNGVPTLVRLLRHT----QDDEVRELITGILWNLSSND--ALKMLIITSALSTLTDNVIIPHSGWEEEPAPRKAED 387 (717)
T ss_pred hhhhcCChHHHHHHHHhh----cchHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhhcccccccCCCCccccccc
Confidence 778899999999999986 48899999999999999873 333333334444444443321 3
Q ss_pred HHHHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHhccC-----CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHH
Q psy12605 428 SNVCEQAVWALGNIIGDGPQLRDYVIN-MGVVPPLLSFIK-----PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL 501 (845)
Q Consensus 428 ~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~-----~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l 501 (845)
.++...+..||.|++..+.+.|..+.+ .|.|..|+.+++ ...+.+-.++|+..+.|+.....- +.-....
T Consensus 388 ~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~----Evp~~~~ 463 (717)
T KOG1048|consen 388 STVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEA----EVPPKYR 463 (717)
T ss_pred ceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhh----hcCHhhh
Confidence 567889999999999998888888875 478899998876 344567889999999999875421 0001111
Q ss_pred HHHH---HhhcCCChhHHHHHH---HHh---------hhcC--chhhHHHHhhhhhhHHHHhhhccCCCCcccccccccc
Q psy12605 502 PALN---ILIHHHDTSVSIYLW---LSI---------IEKN--PQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSI 564 (845)
Q Consensus 502 ~~l~---~ll~~~d~~v~~~~~---l~~---------l~~~--~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~ 564 (845)
+.+. ....-..+.-...|| ... +... +.....+.-+..++..-+.||. ...+..+..++..+
T Consensus 464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~-~s~n~~TlEasaGa 542 (717)
T KOG1048|consen 464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLA-LSKNDNTLEASAGA 542 (717)
T ss_pred hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHH-HhcchHHHHHhhhh
Confidence 1111 000000000011133 111 0000 0001112233344444444444 22223344567788
Q ss_pred cccccCCChh----hHHHH-HhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhh
Q psy12605 565 YMCVSPGTDE----QTQVI-LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSC 639 (845)
Q Consensus 565 l~nl~~~~~~----~~~~l-~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 639 (845)
+.|+..+... ....+ ....+++.|+.++..+++.|.+.++.+|.|++.+. ..+.++..++++.|++.|..+..
T Consensus 543 LQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~--rnk~ligk~a~~~lv~~Lp~~~~ 620 (717)
T KOG1048|consen 543 LQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI--RNKELIGKYAIPDLVRCLPGSGP 620 (717)
T ss_pred HhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc--hhhhhhhcchHHHHHHhCcCCCC
Confidence 8888665332 33333 68889999999999999999999999999998653 24556678899999988832100
Q ss_pred hhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHH
Q psy12605 640 KILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAI 719 (845)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l 719 (845)
-.+.+.++-..+|.+|
T Consensus 621 ----------------------------------------------------------------~~~~sedtv~~vc~tl 636 (717)
T KOG1048|consen 621 ----------------------------------------------------------------STSLSEDTVRAVCHTL 636 (717)
T ss_pred ----------------------------------------------------------------CcCchHHHHHHHHHhH
Confidence 0345567888999999
Q ss_pred HhhcccCCHHHHHHHHHcCCchHHhhhhcc-ccHHHHHHHHHHHHHHHHhhHHH
Q psy12605 720 SNLTISGNRDQVAKLVQEGVIPPFCDLLSC-KDAQVIQVVLDGINNMLKMADAQ 772 (845)
Q Consensus 720 ~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~-~d~~~~~~al~~L~~l~~~~~~~ 772 (845)
.|+. ..++++...+.+.++++.|+.+..+ .++++.++|-..|..|+.+.+-+
T Consensus 637 ~niv-~~~~~nAkdl~~~~g~~kL~~I~~s~~S~k~~kaAs~vL~~lW~y~eLh 689 (717)
T KOG1048|consen 637 NNIV-RKNVLNAKDLLEIKGIPKLRLISKSQHSPKEFKAASSVLDVLWQYKELH 689 (717)
T ss_pred HHHH-HHhHHHHHHHHhccChHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHh
Confidence 9998 6789999999999999999999987 57899999999999999887654
|
|
| >KOG4500|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-15 Score=149.68 Aligned_cols=425 Identities=16% Similarity=0.149 Sum_probs=286.0
Q ss_pred ChhHHHHHHHHHHHHhcCChhhHHH----HHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhh
Q psy12605 102 RPNLQFEAAWALTNIASGTSAQTQE----VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177 (845)
Q Consensus 102 ~~~i~~~a~~~L~~la~~~~~~~~~----i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~ 177 (845)
+..++..++.++...+.. +-.+.. -+++++++.|.+..+|++.++-+++.++|||+|.++.++|..+.+.|+-..
T Consensus 55 ~~tv~~~qssC~A~~sk~-ev~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqi 133 (604)
T KOG4500|consen 55 SDTVYLFQSSCLADRSKN-EVERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQI 133 (604)
T ss_pred cchhhhhhHHHHHHHhhh-HHHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCcee
Confidence 346777888888888853 333333 356788999999999999999999999999999999999999999999888
Q ss_pred HHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHH
Q psy12605 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKI 257 (845)
Q Consensus 178 Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (845)
+++.|+.-.. . +++. +.+.
T Consensus 134 vid~L~~~cs----------------~-----------------------d~~a----------------------ne~~ 152 (604)
T KOG4500|consen 134 VIDVLKPYCS----------------K-----------------------DNPA----------------------NEEY 152 (604)
T ss_pred hHhhhccccc----------------c-----------------------CCcc----------------------HHHH
Confidence 8888764311 0 0111 0014
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc--CCchhhHHHHHHHHHHHhcC-ChhhHHHHhcCCccchhhHhh
Q psy12605 258 LVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS--HKEVKVQTASLRAVGNIVTG-TDEQTQVILNCDALSHFPALL 334 (845)
Q Consensus 258 ~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~--~~~~~v~~~al~~L~nl~~~-~~~~~~~i~~~~~l~~L~~lL 334 (845)
..-++..|.+....+.+....+++.|+++.|...+. -.+...-+..+-..+|+.+- .+.......++...-.+++++
T Consensus 153 ~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll 232 (604)
T KOG4500|consen 153 SAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLL 232 (604)
T ss_pred HHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHH
Confidence 445666777777777777788889999999888773 34444444444444444321 122233445566666778888
Q ss_pred cC-CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCCh---hHHHHHHHHHHHHhcCChHhHHHH
Q psy12605 335 TH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRP---NLQFEAAWALTNIASGTSAQTQEV 410 (845)
Q Consensus 335 ~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~---~v~~~a~~~L~~l~~~~~~~~~~l 410 (845)
.+ .++++++-+...+...+. ++...-.+.+.|.+..++.++++.....+.. ..-..++....-+..|+. ..+++
T Consensus 233 ~~~v~~d~~eM~feila~~ae-nd~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDe-SMq~L 310 (604)
T KOG4500|consen 233 PSMVREDIDEMIFEILAKAAE-NDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDE-SMQKL 310 (604)
T ss_pred HHhhccchhhHHHHHHHHHhc-CcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCch-HHHHH
Confidence 54 456777777777777644 3444456678899999999998742211111 122233444444445554 44455
Q ss_pred HHcC-ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCC----CCChhHHHHHHHHHHHhh
Q psy12605 411 VAAG-AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP----DIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 411 ~~~g-~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~----~~~~~~~~~~~~~l~nL~ 485 (845)
...+ ..+.++.++.+.+.+....+..+|+|+++....+ ..+.+.|.+..|++++.. +.+.+.+..++.+++|+.
T Consensus 311 ~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~c-i~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~ 389 (604)
T KOG4500|consen 311 HADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDIC-IQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLM 389 (604)
T ss_pred hcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHH-HHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcc
Confidence 5554 8899999999999999999999999999987654 466788999999999853 334677778888999987
Q ss_pred cCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccccccc
Q psy12605 486 RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIY 565 (845)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l 565 (845)
--.. .+..+...|+.+.++..++...+++..+ .+..+
T Consensus 390 IPv~-----------------------------------------nka~~~~aGvteaIL~~lk~~~ppv~fk--llgTl 426 (604)
T KOG4500|consen 390 IPVS-----------------------------------------NKAHFAPAGVTEAILLQLKLASPPVTFK--LLGTL 426 (604)
T ss_pred ccCC-----------------------------------------chhhccccchHHHHHHHHHhcCCcchHH--HHHHH
Confidence 5332 1122333455556666666555555433 24444
Q ss_pred ccccCCChhhHHHH-HhCCcccchHHhhcCCCh-hHHHHHHHHHhhhccCC--HHHHHHHHHCCChHHHHHHh
Q psy12605 566 MCVSPGTDEQTQVI-LNCDALSHFPALLTHPKE-KICKEAVWFLSNITAGN--QAQVQAVIDAGLLPKIIANL 634 (845)
Q Consensus 566 ~nl~~~~~~~~~~l-~~~~~l~~L~~ll~~~~~-~v~~~a~~~Lsnl~~~~--~~~~~~~~~~~~l~~L~~ll 634 (845)
+.+..+.+.....+ -+...+..|+.|-++++- .+-.+.-+.++.+..++ ...+..+..+|++...+..+
T Consensus 427 rM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kdv~~tvpksg~ik~~Vsm~ 499 (604)
T KOG4500|consen 427 RMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKDVILTVPKSGGIKEKVSMF 499 (604)
T ss_pred HHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhhhHhhccccccHHHHHHHH
Confidence 55555555433333 344578899999998874 58888889998888663 34556677899888887766
|
|
| >KOG0168|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.1e-16 Score=169.09 Aligned_cols=262 Identities=21% Similarity=0.305 Sum_probs=218.9
Q ss_pred cHHHHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~~~-~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+.+++ ..+... |+..|.+|+..|+.++..........+--.-++|.|+.+|+...+.++...|+++|++++.--|+.
T Consensus 168 k~kkLL-~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S 246 (1051)
T KOG0168|consen 168 KAKKLL-QGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRS 246 (1051)
T ss_pred HHHHHH-HhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccch
Confidence 466777 777766 999999999999999997754444444455679999999988889999999999999999988999
Q ss_pred HHHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 124 TQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
...+++.++||.|+.-|.. .--++.|+++.+|-.|+...+ ..+.++|++-..+.++.-- ....+|.|+.+.+|+|
T Consensus 247 ~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~---~AiL~AG~l~a~LsylDFF-Si~aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 247 SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP---KAILQAGALSAVLSYLDFF-SIHAQRVALAIAANCC 322 (1051)
T ss_pred hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc---HHHHhcccHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 9999999999999987765 456899999999999997644 5788999999988888654 5689999999999999
Q ss_pred cCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc---CChhhHHHH
Q psy12605 203 RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD---GGNDQIQMV 279 (845)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~ 279 (845)
+.- ....+..+..++|.|..++...|.+ .++.+|-++.++++ +..+..+.+
T Consensus 323 ksi-~sd~f~~v~ealPlL~~lLs~~D~k-------------------------~ies~~ic~~ri~d~f~h~~~kLdql 376 (1051)
T KOG0168|consen 323 KSI-RSDEFHFVMEALPLLTPLLSYQDKK-------------------------PIESVCICLTRIADGFQHGPDKLDQL 376 (1051)
T ss_pred hcC-CCccchHHHHHHHHHHHHHhhccch-------------------------hHHHHHHHHHHHHHhcccChHHHHHH
Confidence 987 4566677889999999999999998 88999999999876 466778888
Q ss_pred HhcCchhhHHhhccCC----chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC
Q psy12605 280 IDSGVVPSLIPLLSHK----EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP 337 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~----~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~ 337 (845)
...|++....++|.-. +..+....++.+..++.+++..+..+...++...+..+|...
T Consensus 377 ~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 377 CSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 8999999999999543 234667788999999988887777777888888888887543
|
|
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.6e-13 Score=153.60 Aligned_cols=505 Identities=16% Similarity=0.180 Sum_probs=334.9
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..+..++ ..+.++|.+.+..|..++....... + +++.|..++..+.+|++|..|+..+++++..
T Consensus 4 ~~l~qLl-~~l~spDn~vr~~Ae~~l~~~~~~~-~----------~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~---- 67 (1075)
T KOG2171|consen 4 APLEQLL-QQLLSPDNEVRRQAEEALETLAKTE-P----------LLPALAHILATSADPQVRQLAAVLLRKLLTK---- 67 (1075)
T ss_pred hHHHHHH-HHhcCCCchHHHHHHHHHHHhhccc-c----------hHHHHHHHHhcCCChHHHHHHHHHHHHHHHH----
Confidence 3467888 7888888888999999998764432 1 6899999998889999999999999988742
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
. ..+ -+.+.+..+. ..|+..+.+.+...+|...+.+++.+++
T Consensus 68 ---------------~---------------w~~---l~~e~~~sik-----s~lL~~~~~E~~~~vr~k~~dviAeia~ 109 (1075)
T KOG2171|consen 68 ---------------H---------------WSR---LSAEVQQSIK-----SSLLEIIQSETEPSVRHKLADVIAEIAR 109 (1075)
T ss_pred ---------------H---------------hhc---CCHHHHHHHH-----HHHHHHHHhccchHHHHHHHHHHHHHHH
Confidence 0 001 1134444443 2345555555566899999999999998
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
+.-+. ...+.++.|.+..+++++. .++.|+..|..+...-.+..+.. -..
T Consensus 110 ~~l~e----~WPell~~L~q~~~S~~~~-------------------------~rE~al~il~s~~~~~~~~~~~~-~~~ 159 (1075)
T KOG2171|consen 110 NDLPE----KWPELLQFLFQSTKSPNPS-------------------------LRESALLILSSLPETFGNTLQPH-LDD 159 (1075)
T ss_pred hcccc----chHHHHHHHHHHhcCCCcc-------------------------hhHHHHHHHHhhhhhhccccchh-HHH
Confidence 77433 4568899999999999999 88889888888765433322211 113
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCCh---hhHHHHhcCCccchhhHhh----cCCchhhHHHHHHHHHHhhcCC
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD---EQTQVILNCDALSHFPALL----THPKEKICKEAVWFLSNITAGN 356 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~---~~~~~i~~~~~l~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~ 356 (845)
+.+.+.+.+.+++..|+..|+++++.++...+ .....+. ..+|.++..+ ..++.+....++.+|..++...
T Consensus 160 l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~--~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~ 237 (1075)
T KOG2171|consen 160 LLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFR--DLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESE 237 (1075)
T ss_pred HHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHH--HHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhc
Confidence 34555666677777799999999999986543 2233333 3556566555 4566777788899999988777
Q ss_pred hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHc--CChHHHHHhhCCCCHHHHHHH
Q psy12605 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAA--GAVPLFLRLLMSPHSNVCEQA 434 (845)
Q Consensus 357 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~v~~~a 434 (845)
+......+. .++....+...+.. .+..+|..|...+..++...+..++..... ..++.++.++.....+ .
T Consensus 238 pk~l~~~l~-~ii~~~l~Ia~n~~---l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D----~ 309 (1075)
T KOG2171|consen 238 PKLLRPHLS-QIIQFSLEIAKNKE---LENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDD----D 309 (1075)
T ss_pred hHHHHHHHH-HHHHHHHHHhhccc---ccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccc----h
Confidence 766554432 24555555555543 578999999999999988766555544432 2344444444433222 0
Q ss_pred HHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChh
Q psy12605 435 VWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 514 (845)
Q Consensus 435 ~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~ 514 (845)
-| .. + .-+..+....-.+.+..++-.++.+-++.. .....++.+..++.+.+-.
T Consensus 310 ew-----~~-----------~-------d~~ded~~~~~~~~A~~~lDrlA~~L~g~~---v~p~~~~~l~~~l~S~~w~ 363 (1075)
T KOG2171|consen 310 EW-----SN-----------E-------DDLDEDDEETPYRAAEQALDRLALHLGGKQ---VLPPLFEALEAMLQSTEWK 363 (1075)
T ss_pred hh-----cc-----------c-------cccccccccCcHHHHHHHHHHHHhcCChhh---ehHHHHHHHHHHhcCCCHH
Confidence 00 00 0 000111111123344445555555443222 2244556666666666554
Q ss_pred HHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcC
Q psy12605 515 VSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH 594 (845)
Q Consensus 515 v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~ 594 (845)
-+.+ ++.+++.++.|..+.... .-..+++++...+.+
T Consensus 364 ~R~A------------------------------------------aL~Als~i~EGc~~~m~~-~l~~Il~~Vl~~l~D 400 (1075)
T KOG2171|consen 364 ERHA------------------------------------------ALLALSVIAEGCSDVMIG-NLPKILPIVLNGLND 400 (1075)
T ss_pred HHHH------------------------------------------HHHHHHHHHcccHHHHHH-HHHHHHHHHHhhcCC
Confidence 4433 333444444444443333 122467788889999
Q ss_pred CChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhh
Q psy12605 595 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYS 674 (845)
Q Consensus 595 ~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (845)
++|.||-.||.+|+-++.+-+..++..-...+.|.|+..+.
T Consensus 401 phprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld--------------------------------------- 441 (1075)
T KOG2171|consen 401 PHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLD--------------------------------------- 441 (1075)
T ss_pred CCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhc---------------------------------------
Confidence 99999999999999999887777777777778888887763
Q ss_pred ccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHh-hhhccccHH
Q psy12605 675 SFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFC-DLLSCKDAQ 753 (845)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~-~~L~~~d~~ 753 (845)
...++.++..|+.++-|+..++....+...++ +.+.+++ .++.++.+.
T Consensus 442 ------------------------------~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd-~lm~~~l~~L~~~~~~~ 490 (1075)
T KOG2171|consen 442 ------------------------------STQNVRVQAHAAAALVNFSEECDKSILEPYLD-GLMEKKLLLLLQSSKPY 490 (1075)
T ss_pred ------------------------------ccCchHHHHHHHHHHHHHHHhCcHHHHHHHHH-HHHHHHHHHHhcCCchh
Confidence 56778999999999999997777776666665 5666344 455567889
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q psy12605 754 VIQVVLDGINNMLKMADAQVETLANMIE 781 (845)
Q Consensus 754 ~~~~al~~L~~l~~~~~~~~~~~~~~~~ 781 (845)
+++.++.+|.......+..|.+|++.+.
T Consensus 491 v~e~vvtaIasvA~AA~~~F~pY~d~~M 518 (1075)
T KOG2171|consen 491 VQEQAVTAIASVADAAQEKFIPYFDRLM 518 (1075)
T ss_pred HHHHHHHHHHHHHHHHhhhhHhHHHHHH
Confidence 9999999999999988888888877654
|
|
| >KOG4199|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.5e-14 Score=138.37 Aligned_cols=325 Identities=16% Similarity=0.177 Sum_probs=261.5
Q ss_pred hcCCHHHHHHhhc--cCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC--CChhHHHHHHHHHHHhcCC
Q psy12605 86 HSGILPVLVECLE--RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 86 ~~g~i~~Lv~lL~--~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~nla~~ 161 (845)
..|..|.++.++. .+.+..+...++.+|..+..+.++ +++..+...++++|.. +++++....+.++..-|-.
T Consensus 102 ~~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~ 177 (461)
T KOG4199|consen 102 KNGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM 177 (461)
T ss_pred cCCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence 3466666665553 345667778888888888765544 6777899999999864 5778888888899988888
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh---------hHHhhHHHHHHhhccc-CCch
Q psy12605 162 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM---------STIIELLPALNILIHH-HDTS 231 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---------~~~~~~l~~L~~ll~~-~~~~ 231 (845)
.+.+|+.+++.++.+.+...+.+.....+.+.+.|++.-|.-+++-...+ ....+++..|+..+.- -||+
T Consensus 178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~ 257 (461)
T KOG4199|consen 178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD 257 (461)
T ss_pred hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence 88999999999999999988876666679999999999999887655543 3344566677776653 4566
Q ss_pred hhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC-chh---hHHHHHHHH
Q psy12605 232 VSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK-EVK---VQTASLRAV 307 (845)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~---v~~~al~~L 307 (845)
+...++.+|..++-. ++..+.+.+.|++..++.++.+. +.. ....++..|
T Consensus 258 -------------------------~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslL 311 (461)
T KOG4199|consen 258 -------------------------SLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLL 311 (461)
T ss_pred -------------------------HHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHH
Confidence 788889999988864 45667888999999999999763 333 445667777
Q ss_pred HHHhcCChhhHHHHhcCCccchhhHhh--cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCC
Q psy12605 308 GNIVTGTDEQTQVILNCDALSHFPALL--THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR 385 (845)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~lL--~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~ 385 (845)
+.++ +++..+..+++.|+.+.++.++ .+.+|.+..+++.+++-++-..++.-..+++.|+-...++.|+.++ ..
T Consensus 312 ralA-G~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP---~~ 387 (461)
T KOG4199|consen 312 RALA-GSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHP---VA 387 (461)
T ss_pred HHHh-CCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCc---HH
Confidence 7774 6688899999999999999998 4578999999999999999999999999999999999999999875 46
Q ss_pred hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 386 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
..+|++|||.+.|++..+.+++..+... +++.|+..-...++.....+-.+|..+..+.
T Consensus 388 a~vQrnac~~IRNiv~rs~~~~~~~l~~-GiE~Li~~A~~~h~tce~~akaALRDLGc~v 446 (461)
T KOG4199|consen 388 AQVQRNACNMIRNIVVRSAENRTILLAN-GIEKLIRTAKANHETCEAAAKAALRDLGCDV 446 (461)
T ss_pred HHHHHHHHHHHHHHHHhhhhccchHHhc-cHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence 7899999999999999888888777765 5778888888888888888888888877653
|
|
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-13 Score=148.50 Aligned_cols=415 Identities=15% Similarity=0.161 Sum_probs=273.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHH-HhcCChhhHH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTN-IASGTSAQTQ 125 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~-la~~~~~~~~ 125 (845)
+++ ...-++|+..+..|-..|.++.+.+ ... .+-.|.+.|... .++..|..|--.|.| |.+.+++.+.
T Consensus 5 ~~l-e~tlSpD~n~~~~Ae~~l~~~~~~n----f~~-----F~~~Ls~vl~n~~~~~~~R~~AGL~LKN~L~akd~~~k~ 74 (859)
T KOG1241|consen 5 ELL-EKTLSPDQNVRKRAEKQLEQAQSQN----FPQ-----FLVLLSEVLANDNSSDVARMAAGLQLKNSLTAKDPERKQ 74 (859)
T ss_pred HHH-HHHcCCCcchHHHHHHHHHHHHhcc----HHH-----HHHHHHHHHhccCCcHHHHHHHhHHHhhhhccCCHHHHH
Confidence 444 4566888888888888888875543 111 244555555333 234556555556665 4445444443
Q ss_pred HHHH----------cCChHHHHHhhCCCChhHHHHHHHHHHHhcCC-ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHH
Q psy12605 126 EVVA----------AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194 (845)
Q Consensus 126 ~i~~----------~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~-~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 194 (845)
...+ ..+=..+++-|.++.+.....|..+++.|+.- -|.++- .+.+..++.......+..+++.+
T Consensus 75 ~~~qRWl~l~~e~reqVK~~il~tL~~~ep~~~s~Aaq~va~IA~~ElP~n~w----p~li~~lv~nv~~~~~~~~k~~s 150 (859)
T KOG1241|consen 75 QYQQRWLQLPAEIREQVKNNILRTLGSPEPRRPSSAAQCVAAIACIELPQNQW----PELIVTLVSNVGEEQASMVKESS 150 (859)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHcCCCCCCccchHHHHHHHHHHhhCchhhC----HHHHHHHHHhcccccchHHHHHH
Confidence 3322 01112345566777777777777777777632 111111 13455666666555555789999
Q ss_pred HHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCc--hhhHHHHHHHhhhChhhHHhhhh------------------h
Q psy12605 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT--SVSIYLWLSIIEKNPQISKILVS------------------K 254 (845)
Q Consensus 195 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~--~~~~~~~~~l~~~~~~~~~~~~~------------------~ 254 (845)
+.+|..+|.+-++.........++..+++..+.+.+ .+++.+..+|+..=.-....|.. +
T Consensus 151 lealGyice~i~pevl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqvvcEatq~~d 230 (859)
T KOG1241|consen 151 LEALGYICEDIDPEVLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQVVCEATQSPD 230 (859)
T ss_pred HHHHHHHHccCCHHHHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeeeeeecccCCc
Confidence 999999999887664444555778888888776544 45665555554321111112211 2
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhH---HHHhcC-------
Q psy12605 255 MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT---QVILNC------- 324 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~---~~i~~~------- 324 (845)
.+++..|+.||..+..-..+..+..+....+...+..+++++++|...+++.++++|...-+.. ....+.
T Consensus 231 ~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~ 310 (859)
T KOG1241|consen 231 EEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSK 310 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhh
Confidence 6789999999999988777777777788888888899999999999999999999985432210 111111
Q ss_pred --------CccchhhHhhcCC-------chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHH
Q psy12605 325 --------DALSHFPALLTHP-------KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQ 389 (845)
Q Consensus 325 --------~~l~~L~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~ 389 (845)
+++|.|+++|... +-...+.|..||.-+ .......++|.++.+++.+-.+ ++++-+
T Consensus 311 ~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~--------A~~~~D~Iv~~Vl~Fiee~i~~-pdwr~r 381 (859)
T KOG1241|consen 311 YFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLF--------AQCVGDDIVPHVLPFIEENIQN-PDWRNR 381 (859)
T ss_pred HHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHH--------HHHhcccchhhhHHHHHHhcCC-cchhhh
Confidence 4667888888442 123445555555544 2334456777777777754322 478888
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH-HHHHhCCChHHHHhccCCC
Q psy12605 390 FEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR-DYVINMGVVPPLLSFIKPD 468 (845)
Q Consensus 390 ~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~g~l~~L~~ll~~~ 468 (845)
..|+.+++.+..+....+..-+..++++.++.++.++.-.++..+.|+|+.++...++.+ ....-.+.++.++.-+.+.
T Consensus 382 eaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~De 461 (859)
T KOG1241|consen 382 EAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLNDE 461 (859)
T ss_pred hHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhhC
Confidence 999999999999888888888889999999999999999999999999999998766432 2223344555566555543
Q ss_pred CChhHHHHHHHHHHHhhcC
Q psy12605 469 IPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 469 ~~~~~~~~~~~~l~nL~~~ 487 (845)
..+..++||++.+|+.+
T Consensus 462 --Prva~N~CWAf~~Laea 478 (859)
T KOG1241|consen 462 --PRVASNVCWAFISLAEA 478 (859)
T ss_pred --chHHHHHHHHHHHHHHH
Confidence 36788999999999853
|
|
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.8e-12 Score=135.96 Aligned_cols=628 Identities=14% Similarity=0.125 Sum_probs=355.2
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhcc-CCChhHHHHHHHHHHH-HhcCChhhHHHHHH--c
Q psy12605 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER-SDRPNLQFEAAWALTN-IASGTSAQTQEVVA--A 130 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~i~~~a~~~L~~-la~~~~~~~~~i~~--~ 130 (845)
-++|+..+..|-..|.++.+.+ ... .+..|++.|-. ..++.+|..|.-+|.| +...+++..+...+ .
T Consensus 15 LspD~n~rl~aE~ql~~l~~~d----F~q-----f~~ll~qvl~d~ns~~~~Rm~agl~LKN~l~a~d~~~~~~~~qrW~ 85 (858)
T COG5215 15 LSPDPNARLRAEAQLLELQSGD----FEQ-----FISLLVQVLCDLNSNDQLRMVAGLILKNSLHANDPELQKGCSQRWL 85 (858)
T ss_pred CCCCCCccccHHHHHHHhcccc----HHH-----HHHHHHHHHhccCCcHHHHHHHHHHHhhhhhcCCHHHHHHHHHhhc
Confidence 3556666666666666653322 111 13444544421 1345566666555555 33333333322221 1
Q ss_pred C--------ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 131 G--------AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 131 g--------~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
| +=...++-|.++.+.+...|...++.|+.-. ...-. =.|.+..+++......+.+.+..++.++.++|
T Consensus 86 ~~~~E~k~qvK~~al~aL~s~epr~~~~Aaql~aaIA~~E--lp~~~-wp~lm~~mv~nvg~eqp~~~k~~sl~~~gy~c 162 (858)
T COG5215 86 GMRHESKEQVKGMALRALKSPEPRFCTMAAQLLAAIARME--LPNSL-WPGLMEEMVRNVGDEQPVSGKCESLGICGYHC 162 (858)
T ss_pred cCCHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh--Ccccc-chHHHHHHHHhccccCchHhHHHHHHHHHHHh
Confidence 1 1112355678888888888888888887321 10000 01334455566666678899999999999999
Q ss_pred cCCCCCCChhHHhhHHHHHHhhccc--CCchhhHHHHHHHhhhChhhHHhhhh------------------hHHHHHHHH
Q psy12605 203 RNKDPPPSMSTIIELLPALNILIHH--HDTSVSIYLWLSIIEKNPQISKILVS------------------KMKILVDTV 262 (845)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~~~~~~~~~~~~------------------~~~~~~~a~ 262 (845)
....|..-......++-.++..-.. ++..+++.++.+|+..--.++..|.- +.+++..+.
T Consensus 163 es~~Pe~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy~mqvvceatq~~d~e~q~aaf 242 (858)
T COG5215 163 ESEAPEDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLMFVQGNFCYEEERNYFMQVVCEATQGNDEELQHAAF 242 (858)
T ss_pred hccCHHHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHHHHHHhhcchhhhchhheeeehhccCCcHHHHHHHH
Confidence 9886632223333455555554433 45567888887887655555544443 267888999
Q ss_pred HHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHh--------c--------CCc
Q psy12605 263 WALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVIL--------N--------CDA 326 (845)
Q Consensus 263 ~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~--------~--------~~~ 326 (845)
.||..+..-.....+.+.+.-+...+...+++++.++...|++.+..+|...-+..-... + ..+
T Consensus 243 gCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dv 322 (858)
T COG5215 243 GCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADV 322 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHH
Confidence 999988776666667777878888888999999999999999999999864322111111 1 137
Q ss_pred cchhhHhhcCC-------chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 327 LSHFPALLTHP-------KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 327 l~~L~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
+|.|+++|... +-.+...|..||.-. .++....++.+++.+....-.+ +++.-+..|..+++.+
T Consensus 323 lP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlf--------aq~~gd~i~~pVl~FvEqni~~-~~w~nreaavmAfGSv 393 (858)
T COG5215 323 LPELLSLLEKQGEDYYGDDWNPSMAASSCLQLF--------AQLKGDKIMRPVLGFVEQNIRS-ESWANREAAVMAFGSV 393 (858)
T ss_pred HHHHHHHHHhcCCCccccccchhhhHHHHHHHH--------HHHhhhHhHHHHHHHHHHhccC-chhhhHHHHHHHhhhh
Confidence 88899999542 224455555555443 2222333555666666544322 4778889999999999
Q ss_pred hcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc--CCCCChhHHHHH
Q psy12605 400 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI--KPDIPISFLRNV 477 (845)
Q Consensus 400 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll--~~~~~~~~~~~~ 477 (845)
..+..+.+..-+-..++|.+..++.++.--++..++||++.|+.+- ...+-.+|.+...++.. .-.+......++
T Consensus 394 m~gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~v---a~~i~p~~Hl~~~vsa~liGl~D~p~~~~nc 470 (858)
T COG5215 394 MHGPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHV---AMIISPCGHLVLEVSASLIGLMDCPFRSINC 470 (858)
T ss_pred hcCccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHH---HHhcCccccccHHHHHHHhhhhccchHHhhh
Confidence 9887777777777889999999999989999999999999998643 34455566555554332 223344677899
Q ss_pred HHHHHHhhcCCCCCC----C--hhHHHhHHHHHHHhhc--CCChhHHHHHH--HHhhh-cCchhhHH--------HHhhh
Q psy12605 478 TWVIVNLCRNKDPPP----S--MSTIIELLPALNILIH--HHDTSVSIYLW--LSIIE-KNPQISKI--------LVSKM 538 (845)
Q Consensus 478 ~~~l~nL~~~~~~~~----~--~~~~~~~l~~l~~ll~--~~d~~v~~~~~--l~~l~-~~~~~~~~--------~~~~~ 538 (845)
+|.+-|+..+..+.. + ......++..|...-. .++...+...+ +.-|- -.++..-. ...+-
T Consensus 471 sw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl 550 (858)
T COG5215 471 SWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKL 550 (858)
T ss_pred HHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHH
Confidence 999999988764322 1 1222233333332221 23333333322 11111 01111000 01111
Q ss_pred hhhHHHHh-hhccCCCC-c-ccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCCh-hHHHHHHHHHhhhccCC
Q psy12605 539 KVCSRYLY-YLSHNSGP-M-SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE-KICKEAVWFLSNITAGN 614 (845)
Q Consensus 539 ~~~~~L~~-ll~~~~~~-~-~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~a~~~Lsnl~~~~ 614 (845)
+-+-.+.. .+...+.. . ..+...+.++..++-....-.+ -.+.-++..+.+++++.++ .+...+..+|++++.+-
T Consensus 551 ~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie-~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl 629 (858)
T COG5215 551 DECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIE-DVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSL 629 (858)
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH
Confidence 11100000 00000000 0 0000000011111000000000 0000123455666666543 45566777777777654
Q ss_pred HHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhh
Q psy12605 615 QAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFA 694 (845)
Q Consensus 615 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (845)
.+..+.... .++|.+.+-|
T Consensus 630 ~e~Fe~y~~-~fiPyl~~al------------------------------------------------------------ 648 (858)
T COG5215 630 EERFEQYAS-KFIPYLTRAL------------------------------------------------------------ 648 (858)
T ss_pred HHHHHHHHh-hhhHHHHHHh------------------------------------------------------------
Confidence 444433332 3455554433
Q ss_pred hhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccc--cHHHHHHHHHHHHHHHHhhHHH
Q psy12605 695 FISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK--DAQVIQVVLDGINNMLKMADAQ 772 (845)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~--d~~~~~~al~~L~~l~~~~~~~ 772 (845)
...|..+-..|...++.++. .-..... .........|+++|.++ +.+++-+.+.+...|.-.-+..
T Consensus 649 ----------n~~d~~v~~~avglvgdlan-tl~~df~-~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~ 716 (858)
T COG5215 649 ----------NCTDRFVLNSAVGLVGDLAN-TLGTDFN-IYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGAN 716 (858)
T ss_pred ----------cchhHHHHHHHHHHHHHHHH-HhhhhHH-HHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhh
Confidence 55667788888888888872 1122222 22336777899999884 6689999999999998776666
Q ss_pred HHHHHHHH
Q psy12605 773 VETLANMI 780 (845)
Q Consensus 773 ~~~~~~~~ 780 (845)
|+.|.+.+
T Consensus 717 F~~YL~~i 724 (858)
T COG5215 717 FESYLDMI 724 (858)
T ss_pred HHHHHHHH
Confidence 77665543
|
|
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.65 E-value=6e-13 Score=149.70 Aligned_cols=390 Identities=17% Similarity=0.170 Sum_probs=279.7
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
....+|.+|..+.....- ..+ ..+..+.+...|.++++.|+..+++.|+++..+++...+.+.+.++++.++.++.+
T Consensus 54 ~v~~~~~iL~~~l~~~~~--~~l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~ 130 (503)
T PF10508_consen 54 QVELICDILKRLLSALSP--DSL-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRD 130 (503)
T ss_pred HHHHHHHHHHHHHhccCH--HHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcC
Confidence 556777777776553221 111 45677889999999999999999999999998888878888899999999999999
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCCh
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i 416 (845)
++..+...|..+|.+++.+.. ..+.++..++++.|..++... ++.+|..+..++.++++.+++....+.+.|.+
T Consensus 131 ~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~-----~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll 204 (503)
T PF10508_consen 131 PDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQS-----SDIVRCRVYELLVEIASHSPEAAEAVVNSGLL 204 (503)
T ss_pred CcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhcc-----CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHH
Confidence 999999999999999987654 446788888899999999773 67889999999999999999999999999999
Q ss_pred HHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChh-H----HHHHHHHHHHhhcCCCCC
Q psy12605 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPIS-F----LRNVTWVIVNLCRNKDPP 491 (845)
Q Consensus 417 ~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~-~----~~~~~~~l~nL~~~~~~~ 491 (845)
+.++..+.++|.-++..++..|..++. .+...+.+.+.|+++.|..++.+....+ . .-.....+++++...
T Consensus 205 ~~ll~eL~~dDiLvqlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~--- 280 (503)
T PF10508_consen 205 DLLLKELDSDDILVQLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVS--- 280 (503)
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcC---
Confidence 999999999999999999999999999 6777889999999999999997544322 1 111112233333211
Q ss_pred CChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCC
Q psy12605 492 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPG 571 (845)
Q Consensus 492 ~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~ 571 (845)
...+.. ..
T Consensus 281 --------------------~~~v~~----------------------~~------------------------------ 288 (503)
T PF10508_consen 281 --------------------PQEVLE----------------------LY------------------------------ 288 (503)
T ss_pred --------------------hHHHHH----------------------HH------------------------------
Confidence 000000 00
Q ss_pred ChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHH-HHC-CChHHHHHHhhhhhhhhhhhcccCC
Q psy12605 572 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV-IDA-GLLPKIIANLQKRSCKILNKYLDNN 649 (845)
Q Consensus 572 ~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~-~~~-~~l~~L~~ll~~~~~~~~~~~~~~~ 649 (845)
..++..+..++++.++..+..|+-+++.++...+ -.+.+ ... +.++..++....
T Consensus 289 ----------p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~-G~~~L~~~~~~~~~~~l~~~~~------------- 344 (503)
T PF10508_consen 289 ----------PAFLERLFSMLESQDPTIREVAFDTLGQIGSTVE-GKQLLLQKQGPAMKHVLKAIGD------------- 344 (503)
T ss_pred ----------HHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHH-HHHHHHhhcchHHHHHHHHHHH-------------
Confidence 0122344456677788888889999999985543 33333 332 234444433210
Q ss_pred chhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCH-
Q psy12605 650 NMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNR- 728 (845)
Q Consensus 650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~- 728 (845)
...++..++|..+..+++++.....+
T Consensus 345 -----------------------------------------------------~~~~~~~~lk~r~l~al~~il~~~~~~ 371 (503)
T PF10508_consen 345 -----------------------------------------------------AIKSGSTELKLRALHALASILTSGTDR 371 (503)
T ss_pred -----------------------------------------------------HhcCCchHHHHHHHHHHHHHHhcCCCC
Confidence 01456667888888888888533332
Q ss_pred --HHHHH-------HHHcCCch-HHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCH
Q psy12605 729 --DQVAK-------LVQEGVIP-PFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENV 798 (845)
Q Consensus 729 --~~~~~-------l~~~~~i~-~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~ 798 (845)
+++.. .+..+... .++.+++.+=++++.+++..|..|+.+.-.. ..+....|+++.|.+-....+.
T Consensus 372 ~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~elr~a~~~~l~~l~~~~Wg~----~~i~~~~gfie~lldr~~E~~K 447 (503)
T PF10508_consen 372 QDNDILSITESWYESLSGSPLSNLLMSLLKQPFPELRCAAYRLLQALAAQPWGQ----REICSSPGFIEYLLDRSTETTK 447 (503)
T ss_pred chHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchHHHHHHHHHHHHHhcCHHHH----HHHHhCccHHhhhcCCCCCCCH
Confidence 22222 22334555 7778888878999999999999999775432 3466678888888766655666
Q ss_pred HHHHHHHHHHHHhc
Q psy12605 799 EIYKLAYDIIERYF 812 (845)
Q Consensus 799 ~v~~~a~~~l~~~~ 812 (845)
+.+++=.+++.++.
T Consensus 448 ~~ke~K~~ii~~l~ 461 (503)
T PF10508_consen 448 EGKEAKYDIIKALA 461 (503)
T ss_pred HHHHHHHHHHHHHH
Confidence 65555445555444
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.9e-13 Score=151.17 Aligned_cols=398 Identities=17% Similarity=0.180 Sum_probs=291.8
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy12605 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA 129 (845)
Q Consensus 50 v~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~ 129 (845)
++..+++.+.+....+...|.+++.... ...+ ..++.+.|...| .++++.+|..+++.|.+++.++......+.+
T Consensus 43 lf~~L~~~~~e~v~~~~~iL~~~l~~~~---~~~l-~~~~~~~L~~gL-~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~ 117 (503)
T PF10508_consen 43 LFDCLNTSNREQVELICDILKRLLSALS---PDSL-LPQYQPFLQRGL-THPSPKVRRLALKQLGRIARHSEGAAQLLVD 117 (503)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhccC---HHHH-HHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHhcCCHHHHHHhcC
Confidence 4488998888888888999999887442 1222 567889999999 5788999999999999999877666777888
Q ss_pred cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 130 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
.+.++.++.++.+++..+...|+.+|.+++...+ ..+.+++.+.+..|..++.+++ ..+|..+..++.++++..+...
T Consensus 118 ~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~-~~vR~Rv~el~v~i~~~S~~~~ 195 (503)
T PF10508_consen 118 NELLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSS-DIVRCRVYELLVEIASHSPEAA 195 (503)
T ss_pred ccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccC-HHHHHHHHHHHHHHHhcCHHHH
Confidence 9999999999999999999999999999997654 5566878888999999998753 3678889999999998775555
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
......|+++.++..+.++|.- ++.+++..+..++. .+...+.+.+.|+++.|.
T Consensus 196 ~~~~~sgll~~ll~eL~~dDiL-------------------------vqlnalell~~La~-~~~g~~yL~~~gi~~~L~ 249 (503)
T PF10508_consen 196 EAVVNSGLLDLLLKELDSDDIL-------------------------VQLNALELLSELAE-TPHGLQYLEQQGIFDKLS 249 (503)
T ss_pred HHHHhccHHHHHHHHhcCccHH-------------------------HHHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHH
Confidence 5556678999999999987777 88899999999998 556678888999999999
Q ss_pred hhccCCc--h---hhH-HHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 290 PLLSHKE--V---KVQ-TASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 290 ~lL~~~~--~---~v~-~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
.++.+.. + .+. ...++..++++...+....... ..++..+..++.+.|+..+..|..+++.++. +.+....+
T Consensus 250 ~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~-p~~~~~l~~~~~s~d~~~~~~A~dtlg~igs-t~~G~~~L 327 (503)
T PF10508_consen 250 NLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELY-PAFLERLFSMLESQDPTIREVAFDTLGQIGS-TVEGKQLL 327 (503)
T ss_pred HHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHH-HHHHHHHHHHhCCCChhHHHHHHHHHHHHhC-CHHHHHHH
Confidence 9994432 2 223 3445888888874322111111 1344556667788899999999999999964 44554555
Q ss_pred -Hh-cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH--------hHHHH---HHcCChH-HHHHhhCCCCHH
Q psy12605 364 -ID-AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA--------QTQEV---VAAGAVP-LFLRLLMSPHSN 429 (845)
Q Consensus 364 -~~-~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--------~~~~l---~~~g~i~-~Lv~lL~~~~~~ 429 (845)
.. .+.++..+..+...... ...++|..+..++.++....++ ..... ...+... .+..+++.+=++
T Consensus 328 ~~~~~~~~~~~l~~~~~~~~~-~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~~~~~~~~l~~~~~qPF~e 406 (503)
T PF10508_consen 328 LQKQGPAMKHVLKAIGDAIKS-GSTELKLRALHALASILTSGTDRQDNDILSITESWYESLSGSPLSNLLMSLLKQPFPE 406 (503)
T ss_pred HhhcchHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhcCCchHHHHHHHhcCCchH
Confidence 33 33455555444332110 2568999999999999543221 12222 2234445 788899999999
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCC--hhHHHHHHHHHHH
Q psy12605 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP--ISFLRNVTWVIVN 483 (845)
Q Consensus 430 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~--~~~~~~~~~~l~n 483 (845)
+|..+...|..++......+......|.++.+++--...+. .+.+..++.++.+
T Consensus 407 lr~a~~~~l~~l~~~~Wg~~~i~~~~gfie~lldr~~E~~K~~ke~K~~ii~~l~~ 462 (503)
T PF10508_consen 407 LRCAAYRLLQALAAQPWGQREICSSPGFIEYLLDRSTETTKEGKEAKYDIIKALAK 462 (503)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHhCccHHhhhcCCCCCCCHHHHHHHHHHHHHHHh
Confidence 99999999999999987778777777777777654433222 2334444444443
|
26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding |
| >KOG4500|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.7e-13 Score=139.09 Aligned_cols=329 Identities=16% Similarity=0.128 Sum_probs=236.0
Q ss_pred HhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC-------ChhHHHHHHHHHHH
Q psy12605 85 IHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP-------HSNVCEQAVWALGN 157 (845)
Q Consensus 85 ~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~-------~~~v~~~a~~~L~n 157 (845)
+.++.+..|.+.. ++++.++..++.++|+|+|+.+.|++.++.+.||-..++++|+.. +++.-.-+...|.|
T Consensus 84 I~a~~le~Lrq~p-sS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N 162 (604)
T KOG4500|consen 84 IDAEALELLRQTP-SSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN 162 (604)
T ss_pred hHHHHHHHHHhCC-CCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence 5678888889888 567789999999999999999999999999999988888888642 34566678889999
Q ss_pred hcCCChhhHHHHHhcCChhhHHhhhcCC-CCHHHHHHHHH----HHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCch
Q psy12605 158 IIGDGPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTW----VIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTS 231 (845)
Q Consensus 158 la~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~----~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~ 231 (845)
..-++.+.+..+.+.|+++.|...+.-+ .+....+.... .++-.|+.. .++.......-.+++++.. ..++
T Consensus 163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~---~~~~~d~sl~~~l~~ll~~~v~~d 239 (604)
T KOG4500|consen 163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEML---YPFCKDCSLVFMLLQLLPSMVRED 239 (604)
T ss_pred hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhh---hhhhccchHHHHHHHHHHHhhccc
Confidence 9999999999999999999888776422 22222222222 222222211 1111222333344444432 2333
Q ss_pred hhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC-Cch-------hhHHHH
Q psy12605 232 VSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEV-------KVQTAS 303 (845)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~-------~v~~~a 303 (845)
+.+.++..+++.++.+.-. -.+++.|.+..++.+++. +.. .....+
T Consensus 240 -------------------------~~eM~feila~~aend~Vk-l~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~ 293 (604)
T KOG4500|consen 240 -------------------------IDEMIFEILAKAAENDLVK-LSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRI 293 (604)
T ss_pred -------------------------hhhHHHHHHHHHhcCccee-eehhhcchHHHHHHHHHhcccccchHHHHHHHHhh
Confidence 5667778888888765433 345688999999998854 221 122334
Q ss_pred HHHHHHHhcCChhhHHHHhcCC-ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc
Q psy12605 304 LRAVGNIVTGTDEQTQVILNCD-ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI 382 (845)
Q Consensus 304 l~~L~nl~~~~~~~~~~i~~~~-~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~ 382 (845)
+....-+..+++. .+.+...+ +++.+...+.+.|.+....+.-+++|+++.+. ....+++.+++..|++++......
T Consensus 294 ~el~vllltGDeS-Mq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~v 371 (604)
T KOG4500|consen 294 AELDVLLLTGDES-MQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDV 371 (604)
T ss_pred hhHhhhhhcCchH-HHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4444445556444 44455544 88899999999999999999999999977654 457788999999999999875444
Q ss_pred cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 383 ~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
+.+.+++..++.+|.|++--- .++..+...|..+.++..+....|.+...-+.++.-+....+
T Consensus 372 dgnV~~qhA~lsALRnl~IPv-~nka~~~~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe 434 (604)
T KOG4500|consen 372 DGNVERQHACLSALRNLMIPV-SNKAHFAPAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQE 434 (604)
T ss_pred CccchhHHHHHHHHHhccccC-CchhhccccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchH
Confidence 457788999999999987532 345678889999999999999999999888888876655444
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.64 E-value=5.5e-14 Score=162.48 Aligned_cols=358 Identities=16% Similarity=0.208 Sum_probs=255.8
Q ss_pred HHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy12605 52 EAARKD--NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA 129 (845)
Q Consensus 52 ~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~ 129 (845)
+.+++. +...+..++..+..+...+.+. .-+.+..++++. +++...++-+--++..+...+++....
T Consensus 11 ~~~~~~~~~~~~~~~~l~kli~~~~~G~~~-------~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~l--- 79 (526)
T PF01602_consen 11 KILNSFKIDISKKKEALKKLIYLMMLGYDI-------SFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPELLIL--- 79 (526)
T ss_dssp HHHHCSSTHHHHHHHHHHHHHHHHHTT----------GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHHH---
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHcCCCC-------chHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHHH---
Confidence 566666 7778888888888776666442 257888899995 788999999999999998876663322
Q ss_pred cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 130 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
++..+.+-|.++++.++..|+++|++++ +++..+.+ ++.+.+++.++.+ .+|+.|+.++..+.+..+.
T Consensus 80 --~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~~l-----~~~v~~ll~~~~~-~VRk~A~~~l~~i~~~~p~-- 147 (526)
T PF01602_consen 80 --IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAEPL-----IPDVIKLLSDPSP-YVRKKAALALLKIYRKDPD-- 147 (526)
T ss_dssp --HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHHHH-----HHHHHHHHHSSSH-HHHHHHHHHHHHHHHHCHC--
T ss_pred --HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhhHH-----HHHHHHHhcCCch-HHHHHHHHHHHHHhccCHH--
Confidence 6788889999999999999999999998 34554443 6778888887754 8999999999999986521
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
..... .++.+.+++.+.++. ++..|+.++..+ ..++.....+ -...+..|.
T Consensus 148 -~~~~~-~~~~l~~lL~d~~~~-------------------------V~~~a~~~l~~i-~~~~~~~~~~-~~~~~~~L~ 198 (526)
T PF01602_consen 148 -LVEDE-LIPKLKQLLSDKDPS-------------------------VVSAALSLLSEI-KCNDDSYKSL-IPKLIRILC 198 (526)
T ss_dssp -CHHGG-HHHHHHHHTTHSSHH-------------------------HHHHHHHHHHHH-HCTHHHHTTH-HHHHHHHHH
T ss_pred -HHHHH-HHHHHhhhccCCcch-------------------------hHHHHHHHHHHH-ccCcchhhhh-HHHHHHHhh
Confidence 11122 799999999888888 888899888888 3333211111 224455666
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
.++..+++-.+..+++++..++...+..... ...++.+..++.+.++.+..+++.++..+..... .-..++
T Consensus 199 ~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~------~~~~~~ 269 (526)
T PF01602_consen 199 QLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE------LLQKAI 269 (526)
T ss_dssp HHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH------HHHHHH
T ss_pred hcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH------HHHhhH
Confidence 6667889999999999999998766554421 3467888888888889999999999998854432 234467
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 449 (845)
+.|+.++.+ .++.++..++.++..++...+. .+. .....+..+..+++..++..++..|..++... ...
T Consensus 270 ~~L~~lL~s-----~~~nvr~~~L~~L~~l~~~~~~----~v~-~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~-n~~ 338 (526)
T PF01602_consen 270 NPLIKLLSS-----SDPNVRYIALDSLSQLAQSNPP----AVF-NQSLILFFLLYDDDPSIRKKALDLLYKLANES-NVK 338 (526)
T ss_dssp HHHHHHHTS-----SSHHHHHHHHHHHHHHCCHCHH----HHG-THHHHHHHHHCSSSHHHHHHHHHHHHHH--HH-HHH
T ss_pred HHHHHHhhc-----ccchhehhHHHHHHHhhcccch----hhh-hhhhhhheecCCCChhHHHHHHHHHhhccccc-chh
Confidence 889999985 4889999999999999876522 222 22222333444889999999999999998532 122
Q ss_pred HHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 450 ~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
. +++.|...+.+..+.++++.++..++.++..
T Consensus 339 ~------Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~ 370 (526)
T PF01602_consen 339 E------ILDELLKYLSELSDPDFRRELIKAIGDLAEK 370 (526)
T ss_dssp H------HHHHHHHHHHHC--HHHHHHHHHHHHHHHHH
T ss_pred h------HHHHHHHHHHhccchhhhhhHHHHHHHHHhc
Confidence 2 4667777775444556777777777776643
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >KOG1293|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.6e-13 Score=141.63 Aligned_cols=503 Identities=14% Similarity=0.101 Sum_probs=314.0
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 91 PVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 91 ~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
..+..++ ..+|+....|..-..+++.++++.+..+++.|++|.|+.+++.. ..+.+....-+++..+....+....
T Consensus 13 ~~l~~L~--~~dpe~lvrai~~~kN~vig~~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~s 90 (678)
T KOG1293|consen 13 DLLYRLL--HLDPEQLVRAIYMSKNLVIGFTDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDS 90 (678)
T ss_pred HHHHhhh--cCCHHHHHHHHHHhcchhhcCCCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHH
Confidence 3344554 34567778888888898888888888899999999999999875 4566667777888888777788888
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC--hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS--MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~--~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
+.+.+.++.++.++.+..+..++.....++.++....+.... .......++.+..+...+...
T Consensus 91 vL~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~--------------- 155 (678)
T KOG1293|consen 91 VLRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKY--------------- 155 (678)
T ss_pred HHHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhh---------------
Confidence 999999999999998876578999999999999887743332 223334555554444422222
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHH---HHhcCChhhHH----
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVG---NIVTGTDEQTQ---- 319 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~---nl~~~~~~~~~---- 319 (845)
+...-+...++++... +....+.++|+.+.+.-++..-+...+.+|+.+++ ++...++....
T Consensus 156 ----------~~~l~~~~~a~~s~~~-~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~ 224 (678)
T KOG1293|consen 156 ----------ISRLDVSRAAHLSSTK-DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLG 224 (678)
T ss_pred ----------hhhhhhhhhccccccc-hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHH
Confidence 2223333334444333 45566778899999999988888999999999999 77776655433
Q ss_pred HHhcCCccc--hhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh----cCChHH-----HHHHhhhcccccCChhH
Q psy12605 320 VILNCDALS--HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID----AGLLPK-----IIANLQKVGRIVLRPNL 388 (845)
Q Consensus 320 ~i~~~~~l~--~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~----~~~i~~-----Lv~lL~~~~~~~~~~~v 388 (845)
...+.|+.+ .+..++.+++...+..++.++.++...+.+....+.. ..+-.. .+.++.+++ ...
T Consensus 225 ~L~d~~v~~r~~v~rL~k~~~~s~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~-----~s~ 299 (678)
T KOG1293|consen 225 LLKDKGVNIRCVVTRLLKDPDFSERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPG-----LST 299 (678)
T ss_pred HHhccccchhhhhhhhhhCCCccHHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCc-----eee
Confidence 344556666 5667778888888888999998886655222111111 111001 111111211 111
Q ss_pred HHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCC-
Q psy12605 389 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP- 467 (845)
Q Consensus 389 ~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~- 467 (845)
-..++...+.++.--+.......+....+...+++. +-..++...+..|..+.+...+..-...-..
T Consensus 300 l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~ellf------------~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i 367 (678)
T KOG1293|consen 300 LDHTNVLFCILARFASKLQLPQHEEATLKTTTELLF------------ICASLAASDEKYRLILLNETLILNHLEYGLEI 367 (678)
T ss_pred hhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHHHHHH------------HHHHHhhcchhhhHHHhhhhhhhhhhhhhcch
Confidence 122233333333222233333344444444444432 2223333334444444333222111111000
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhh
Q psy12605 468 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYY 547 (845)
Q Consensus 468 ~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~l 547 (845)
....++.. ......+..+....|.+...++.+.+ ..+++.+..
T Consensus 368 ~~~k~~l~----------------------~~t~~~l~~~~~~kd~~~~aaa~l~~---------------~s~srsV~a 410 (678)
T KOG1293|consen 368 SLKKEILE----------------------TTTESHLMCLPPIKDHDFVAAALLCL---------------KSFSRSVSA 410 (678)
T ss_pred hHHHHHHH----------------------HHHHHHHccccccccHHHHHHHHHHH---------------HHHHHHHHH
Confidence 00001111 11111122222234444443322111 112233333
Q ss_pred hccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCCh
Q psy12605 548 LSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 627 (845)
Q Consensus 548 l~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l 627 (845)
|.+. +-...+...|++++..|...|...+.++|.|++..-......|+.+|++
T Consensus 411 L~tg---------------------------~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI 463 (678)
T KOG1293|consen 411 LRTG---------------------------LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI 463 (678)
T ss_pred HHcC---------------------------CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence 3332 1123456788899999999999999999999998877788899999999
Q ss_pred HHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCC
Q psy12605 628 PKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQG 707 (845)
Q Consensus 628 ~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 707 (845)
..+...+ .+.
T Consensus 464 d~l~s~~----------------------------------------------------------------------~~~ 473 (678)
T KOG1293|consen 464 DILESML----------------------------------------------------------------------TDP 473 (678)
T ss_pred HHHHHHh----------------------------------------------------------------------cCC
Confidence 9999877 678
Q ss_pred CccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHH
Q psy12605 708 EFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQ 772 (845)
Q Consensus 708 ~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~ 772 (845)
++.+|..+.|+|.|+...++.+....+...=.-..+..+..++|+.|++.++..|.|+.....+.
T Consensus 474 ~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~s 538 (678)
T KOG1293|consen 474 DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKS 538 (678)
T ss_pred CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHH
Confidence 89999999999999996666666666666556666777888899999999999999998765554
|
|
| >KOG2171|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=2e-12 Score=147.57 Aligned_cols=463 Identities=17% Similarity=0.197 Sum_probs=298.7
Q ss_pred HHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 46 LDMLVVEAA-RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 46 i~~lv~~~l-~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
++.+. ..+ .+.||+.+..|+.-+|+++..--+ ....=....+-..|+..+.++..+.+|...+.++..+++..-..
T Consensus 38 l~~L~-~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~-~l~~e~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e- 114 (1075)
T KOG2171|consen 38 LPALA-HILATSADPQVRQLAAVLLRKLLTKHWS-RLSAEVQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE- 114 (1075)
T ss_pred HHHHH-HHHhcCCChHHHHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-
Confidence 33444 444 467899999999999999874211 11222233455666777767778899999999999998742211
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
-=.++++.|.+..+|+++..|+.|+.+|.++...-.. .+..+.+ ..+.+.+.+..++. .+|..++.++..+..
T Consensus 115 ---~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~--l~~lf~q~~~d~s~-~vr~~a~rA~~a~~~ 188 (1075)
T KOG2171|consen 115 ---KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDD--LLRLFSQTMTDPSS-PVRVAAVRALGAFAE 188 (1075)
T ss_pred ---chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHH--HHHHHHHhccCCcc-hHHHHHHHHHHHHHH
Confidence 0024566666777899999999999999998743211 1111111 23444455555545 499999999999888
Q ss_pred CCC-CCCChhHHhhHHHHHHhhcc----cCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHH
Q psy12605 204 NKD-PPPSMSTIIELLPALNILIH----HHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQM 278 (845)
Q Consensus 204 ~~~-~~~~~~~~~~~l~~L~~ll~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 278 (845)
..+ ...........+|.++..+. ..|.+ ....++.+|..++...+...+.
T Consensus 189 ~~~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~-------------------------~a~~~l~~l~El~e~~pk~l~~ 243 (1075)
T KOG2171|consen 189 YLENNKSEVDKFRDLLPSLLNVLQEVIQDGDDD-------------------------AAKSALEALIELLESEPKLLRP 243 (1075)
T ss_pred HhccchHHHHHHHHHhHHHHHHhHhhhhccchH-------------------------HHHHHHHHHHHHHhhchHHHHH
Confidence 763 33334455567776666554 34444 5677888888887766654443
Q ss_pred HHhcCchhhHHhhccC--CchhhHHHHHHHHHHHhcCChhhHHHH--hcCCccchhhHhhcCC--c--------------
Q psy12605 279 VIDSGVVPSLIPLLSH--KEVKVQTASLRAVGNIVTGTDEQTQVI--LNCDALSHFPALLTHP--K-------------- 338 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~i--~~~~~l~~L~~lL~~~--~-------------- 338 (845)
... .+++.......+ -+..+|..|+.+|..++..-+...+.. .-...++.++.++... |
T Consensus 244 ~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~ 322 (1075)
T KOG2171|consen 244 HLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDE 322 (1075)
T ss_pred HHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccc
Confidence 322 345555555544 367899999999999986633222211 2223455555555321 1
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHH
Q psy12605 339 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPL 418 (845)
Q Consensus 339 ~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~ 418 (845)
+.-...|..+|-.++.+-+. .-+.|.+++.+...-.+ .++.-|..+..+++.++.|+.+...... ...++.
T Consensus 323 ~~~~~~A~~~lDrlA~~L~g-------~~v~p~~~~~l~~~l~S-~~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~ 393 (1075)
T KOG2171|consen 323 ETPYRAAEQALDRLALHLGG-------KQVLPPLFEALEAMLQS-TEWKERHAALLALSVIAEGCSDVMIGNL-PKILPI 393 (1075)
T ss_pred cCcHHHHHHHHHHHHhcCCh-------hhehHHHHHHHHHHhcC-CCHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHH
Confidence 11334555666666554331 12445544444322111 4889999999999999999988776643 357888
Q ss_pred HHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHH
Q psy12605 419 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTII 498 (845)
Q Consensus 419 Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~ 498 (845)
.+..|+++++.||..|+.+++.++.+-..--..-...-+.+.|+..+.+..+..+..+++.++-|++.... ...+.
T Consensus 394 Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~----~~~l~ 469 (1075)
T KOG2171|consen 394 VLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECD----KSILE 469 (1075)
T ss_pred HHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCc----HHHHH
Confidence 99999999999999999999999987544444445556778899999888888899999988888876542 12222
Q ss_pred hHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHH
Q psy12605 499 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQV 578 (845)
Q Consensus 499 ~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~ 578 (845)
++++.+. +
T Consensus 470 pYLd~lm----------------------------------------~-------------------------------- 477 (1075)
T KOG2171|consen 470 PYLDGLM----------------------------------------E-------------------------------- 477 (1075)
T ss_pred HHHHHHH----------------------------------------H--------------------------------
Confidence 2222111 0
Q ss_pred HHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhh
Q psy12605 579 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636 (845)
Q Consensus 579 l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~ 636 (845)
+.+..+++++++.+++.++.+|+.++...+....+..+ .++|.|.+.|++
T Consensus 478 -------~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d-~~Mp~L~~~L~n 527 (1075)
T KOG2171|consen 478 -------KKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFD-RLMPLLKNFLQN 527 (1075)
T ss_pred -------HHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHH-HHHHHHHHHHhC
Confidence 13445567788899999999999998655544444444 367777777753
|
|
| >KOG2122|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-13 Score=157.89 Aligned_cols=361 Identities=18% Similarity=0.189 Sum_probs=274.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC---CChhHHHHHHHHHHHHhcCChhhH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS---DRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.++ .++...|++.. .+.|..+.++. ...-.+..+|.+|.|+++| .. ++.+.+..|-.+|.+|....++.+
T Consensus 201 sll-sml~t~D~ee~---ar~fLemSss~--esCaamR~SgCLpLLvQil-H~~d~~~kear~~A~aALHNIVhSqPD~k 273 (2195)
T KOG2122|consen 201 SLL-SMLGTDDEEEM---ARTFLEMSSSP--ESCAAMRRSGCLPLLVQIL-HGPDDEDKEARKRASAALHNIVHSQPDEK 273 (2195)
T ss_pred HHh-hhcccCCHHHH---HHHHHHhccCc--hhhHHHHhccchHHHHHHh-hCCchhhHHHHHHHHHHHHHHhhcCcchh
Confidence 445 56666666533 44555554433 2245677899999999999 33 245789999999999997666654
Q ss_pred HHHHHcCChHHHHHh----------hCCC-------ChhHHH-HHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC--
Q psy12605 125 QEVVAAGAVPLFLRL----------LMSP-------HSNVCE-QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP-- 184 (845)
Q Consensus 125 ~~i~~~g~i~~L~~l----------L~s~-------~~~v~~-~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~-- 184 (845)
..=.+.-+++.|=+. ++.. ..+-+. +|+.+|.+++. +++.|+.+.+.|++..+-+++.-
T Consensus 274 r~RRE~kvL~lLeQIraYC~~~~~~lqar~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh 352 (2195)
T KOG2122|consen 274 RGRREKKVLHLLEQIRAYCETCWTWLQARGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDH 352 (2195)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 433332233333221 1221 112233 78889999984 57899999999999998887741
Q ss_pred ---------CCCHHHHHHHHHHHHHhhcCCCC-CCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhh
Q psy12605 185 ---------DIPISFLRNVTWVIVNLCRNKDP-PPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 254 (845)
Q Consensus 185 ---------~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (845)
.....+|+.|..+|.||.-+... ...+....|++..+|..+.+...+
T Consensus 353 ~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~pee----------------------- 409 (2195)
T KOG2122|consen 353 EMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISAPEE----------------------- 409 (2195)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcChHH-----------------------
Confidence 12458999999999999998743 334566779999999988877666
Q ss_pred HHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcC-Cccchhh
Q psy12605 255 MKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNC-DALSHFP 331 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~-~~l~~L~ 331 (845)
+.+..+..|.+|+=. +.+..+.+.+.|-+..|+..- ....+....+.+.+|.||+.+..+++..|... |++..|+
T Consensus 410 --L~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLV 487 (2195)
T KOG2122|consen 410 --LLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLV 487 (2195)
T ss_pred --HHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHH
Confidence 667777788888633 344556777778888887765 55677788999999999999888777777655 8899999
Q ss_pred HhhcCC----chhhHHHHHHHHHHhhc---CChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 332 ALLTHP----KEKICKEAVWFLSNITA---GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 332 ~lL~~~----~~~~~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
.+|+.. .-.+.+.+-++|.|++. ...++++.+.+.+.+..|++.|+++ +-.+..++|.+|+||...++
T Consensus 488 g~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LKS~-----SLTiVSNaCGTLWNLSAR~p 562 (2195)
T KOG2122|consen 488 GTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLKSH-----SLTIVSNACGTLWNLSARSP 562 (2195)
T ss_pred hhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhhhc-----ceEEeecchhhhhhhhcCCH
Confidence 999653 35677888888888654 4667778888899999999999996 67788999999999999999
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
+..+.+++.|+++.|..++.+.+.++.+-++.+|.|+..+-+
T Consensus 563 ~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RP 604 (2195)
T KOG2122|consen 563 EDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRP 604 (2195)
T ss_pred HHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCc
Confidence 999999999999999999999999999999999999986543
|
|
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.8e-11 Score=138.27 Aligned_cols=383 Identities=13% Similarity=0.097 Sum_probs=267.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.++- +.|++.+...+..|+..+..+...+.+ . +.+.+..++++ .+++.++|+.....|.+++..+++..-
T Consensus 34 ~~ELr-~~L~s~~~~~kk~alKkvIa~mt~G~D--v-----S~LF~dVvk~~-~S~d~elKKLvYLYL~~ya~~~pelal 104 (746)
T PTZ00429 34 GAELQ-NDLNGTDSYRKKAAVKRIIANMTMGRD--V-----SYLFVDVVKLA-PSTDLELKKLVYLYVLSTARLQPEKAL 104 (746)
T ss_pred HHHHH-HHHHCCCHHHHHHHHHHHHHHHHCCCC--c-----hHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcccChHHHH
Confidence 34555 788898888889999988888776644 1 23577888888 577889999999999999876666543
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
. ++..|.+-++++++.+|-.|+++|++|-. ++.-+.+ ++.+.+.+.+. +..+|+.|+.++..+.+..
T Consensus 105 L-----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~l-----~~~lkk~L~D~-~pYVRKtAalai~Kly~~~ 171 (746)
T PTZ00429 105 L-----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEYT-----LEPLRRAVADP-DPYVRKTAAMGLGKLFHDD 171 (746)
T ss_pred H-----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHHH-----HHHHHHHhcCC-CHHHHHHHHHHHHHHHhhC
Confidence 2 67888999999999999999999999863 3333332 45667777766 4589999999999998755
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
+ ......+.++.|..++.+.|+. ++.+|+.+|..+...+++... ...+.+
T Consensus 172 p---elv~~~~~~~~L~~LL~D~dp~-------------------------Vv~nAl~aL~eI~~~~~~~l~--l~~~~~ 221 (746)
T PTZ00429 172 M---QLFYQQDFKKDLVELLNDNNPV-------------------------VASNAAAIVCEVNDYGSEKIE--SSNEWV 221 (746)
T ss_pred c---ccccccchHHHHHHHhcCCCcc-------------------------HHHHHHHHHHHHHHhCchhhH--HHHHHH
Confidence 2 2233457888899999999998 899999999988766544332 234556
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCC-hHHHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN-QAQVQAVI 364 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~l~ 364 (845)
..++..|.+-++..+...+++|......++... ..++..+...|.+.++.+.-+|+.++.++.... ++..+...
T Consensus 222 ~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~-----~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~ 296 (746)
T PTZ00429 222 NRLVYHLPECNEWGQLYILELLAAQRPSDKESA-----ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCT 296 (746)
T ss_pred HHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHH-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHH
Confidence 777777777778888888888866432222211 135677888888999999999999999986542 23222221
Q ss_pred hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 365 DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
..+.++++.++. .++++|..+...+..++...+.. +.. -+..+.-..+++. .|+...+..|..++..
T Consensus 297 -~rl~~pLv~L~s------s~~eiqyvaLr~I~~i~~~~P~l----f~~-~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane 363 (746)
T PTZ00429 297 -VRVNTALLTLSR------RDAETQYIVCKNIHALLVIFPNL----LRT-NLDSFYVRYSDPP-FVKLEKLRLLLKLVTP 363 (746)
T ss_pred -HHHHHHHHHhhC------CCccHHHHHHHHHHHHHHHCHHH----HHH-HHHhhhcccCCcH-HHHHHHHHHHHHHcCc
Confidence 223356666643 26899999998888887765532 222 1344444444444 5899999999999864
Q ss_pred ChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCC
Q psy12605 445 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 445 ~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~ 511 (845)
.. ... ++..|..+.. +.+.++.+.++.+++.++...+ .....++..|..++...
T Consensus 364 ~N-v~~------IL~EL~eYa~-d~D~ef~r~aIrAIg~lA~k~~-----~~a~~cV~~Ll~ll~~~ 417 (746)
T PTZ00429 364 SV-APE------ILKELAEYAS-GVDMVFVVEVVRAIASLAIKVD-----SVAPDCANLLLQIVDRR 417 (746)
T ss_pred cc-HHH------HHHHHHHHhh-cCCHHHHHHHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCC
Confidence 42 222 2355555554 3456899999999999986542 23455666666666543
|
|
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-13 Score=146.57 Aligned_cols=280 Identities=19% Similarity=0.208 Sum_probs=199.8
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhc----CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM----GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~----g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
.++|.|..+|.+++....+-|..+|.+|+.++++.-+.-.-. -.+|.++.+.+++.+ .+|..|+.++..+....
T Consensus 128 elLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~sp-kiRs~A~~cvNq~i~~~- 205 (885)
T KOG2023|consen 128 ELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSP-KIRSHAVGCVNQFIIIQ- 205 (885)
T ss_pred hHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCCh-hHHHHHHhhhhheeecC-
Confidence 378999999999999999999999999999887653331111 258889999999855 89999999998877655
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchh
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVP 286 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 286 (845)
+..-+......+..+..+-.+++++ ++...|.++.+|.+...+....- =.++++
T Consensus 206 ~qal~~~iD~Fle~lFalanD~~~e-------------------------VRk~vC~alv~Llevr~dkl~ph-l~~Ive 259 (885)
T KOG2023|consen 206 TQALYVHIDKFLEILFALANDEDPE-------------------------VRKNVCRALVFLLEVRPDKLVPH-LDNIVE 259 (885)
T ss_pred cHHHHHHHHHHHHHHHHHccCCCHH-------------------------HHHHHHHHHHHHHHhcHHhcccc-hHHHHH
Confidence 3444556778888888888888888 99999999999987665532221 125667
Q ss_pred hHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcC--CccchhhHhhcCC--chhhHH-------------------
Q psy12605 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC--DALSHFPALLTHP--KEKICK------------------- 343 (845)
Q Consensus 287 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~--~~l~~L~~lL~~~--~~~~~~------------------- 343 (845)
.++..-.+.++.|...|++.+..++... -.+..+... ..+|.|++-+... |..+.+
T Consensus 260 yML~~tqd~dE~VALEACEFwla~aeqp-i~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRf 338 (885)
T KOG2023|consen 260 YMLQRTQDVDENVALEACEFWLALAEQP-ICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRF 338 (885)
T ss_pred HHHHHccCcchhHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchh
Confidence 7777778888999999999999998654 222222211 3455555433111 100000
Q ss_pred ---------------------------HHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHH
Q psy12605 344 ---------------------------EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396 (845)
Q Consensus 344 ---------------------------~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L 396 (845)
..-|-|+.+++..-+....+....+++.++.+++..-.. +++.+|+.+..++
T Consensus 339 hksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~-~~W~vrEagvLAl 417 (885)
T KOG2023|consen 339 HKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSS-EEWKVREAGVLAL 417 (885)
T ss_pred hhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCc-chhhhhhhhHHHH
Confidence 012555555554445555566677888888887754222 5789999999999
Q ss_pred HHHhcCChHhHHHHHHc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 397 TNIASGTSAQTQEVVAA--GAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 397 ~~l~~~~~~~~~~l~~~--g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+.++.|+... ++.+ ..+|.|+.+|.+..+-||.-++|+|+..+.
T Consensus 418 GAIAEGcM~g---~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~ 463 (885)
T KOG2023|consen 418 GAIAEGCMQG---FVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSK 463 (885)
T ss_pred HHHHHHHhhh---cccchHHHHHHHHHHhccCccceeeeeeeeHhhhhh
Confidence 9999876432 2222 368889999999999999999999999874
|
|
| >KOG1222|consensus | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.1e-12 Score=132.77 Aligned_cols=370 Identities=15% Similarity=0.161 Sum_probs=274.7
Q ss_pred HHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 40 KMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 40 ~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
+|....+-.++...|+..+.+.....+..|.++.-..+ ++..+.+.|+|..|++++ ....|+++...+..|.+++.+
T Consensus 299 KMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~e--NK~~M~~~~iveKL~klf-p~~h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 299 KMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDE--NKIVMEQNGIVEKLLKLF-PIQHPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhcc--chHHHHhccHHHHHHHhc-CCCCHHHHHHHHHHhhhcccc
Confidence 45555555544378888888877777888888765553 467888999999999999 678899999999999999864
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
...+..++..|.+|.|..+|.+... ...|+..|..++.++ +.+..+....+|+.+...+-.+....+-...+...-
T Consensus 376 -~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ci 451 (791)
T KOG1222|consen 376 -SGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCI 451 (791)
T ss_pred -ccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHH
Confidence 6788899999999999999987643 356888888998764 578888888899999987766555555555566667
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHh-hcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNI-LIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQM 278 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~-ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 278 (845)
|+|-+..+.+-.. ....+..|.. .++..|+- ....+.+++.++.....+
T Consensus 452 Nl~lnkRNaQlvc-eGqgL~~LM~ra~k~~D~l-----------------------------LmK~vRniSqHeg~tqn~ 501 (791)
T KOG1222|consen 452 NLCLNKRNAQLVC-EGQGLDLLMERAIKSRDLL-----------------------------LMKVVRNISQHEGATQNM 501 (791)
T ss_pred HHHhccccceEEe-cCcchHHHHHHHhcccchH-----------------------------HHHHHHHhhhccchHHHH
Confidence 8888775544433 3445555554 34445543 234466777776644444
Q ss_pred HHhcCchhhHHhhcc-CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC--chhhHHHHHHHHHHhhcC
Q psy12605 279 VIDSGVVPSLIPLLS-HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP--KEKICKEAVWFLSNITAG 355 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~ 355 (845)
+++ .+..|...++ +.+++....++++++|+...+-+..+.+.+...+|.+-..|..+ ..++.-.....++.++..
T Consensus 502 Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d 579 (791)
T KOG1222|consen 502 FID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARD 579 (791)
T ss_pred HHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhh
Confidence 443 4555566554 45667888999999999887777788888889999999999653 345666666666666443
Q ss_pred ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHH-HcCChHHHHHhhCCCCHHHHHHH
Q psy12605 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVV-AAGAVPLFLRLLMSPHSNVCEQA 434 (845)
Q Consensus 356 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~g~i~~Lv~lL~~~~~~v~~~a 434 (845)
..+...+..+++++.++++|+... .+.+......+.+..+..+. ..+..++ +...-..++.++.+.+.++|+.|
T Consensus 580 -~~cA~Lla~a~~i~tlieLL~a~Q---eDDEfV~QiiyVF~Q~l~He-~tr~~miket~~~AylIDLMHDkN~eiRkVC 654 (791)
T KOG1222|consen 580 -LDCARLLAPAKLIDTLIELLQACQ---EDDEFVVQIIYVFLQFLKHE-LTRRLMIKETALGAYLIDLMHDKNAEIRKVC 654 (791)
T ss_pred -hHHHHHhCccccHHHHHHHHHhhc---ccchHHHHHHHHHHHHHHHH-HHHHHHHhhccchHHHHHHHhcccHHHHHHH
Confidence 455566677999999999998764 56778888889999888873 3344444 45667789999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHH
Q psy12605 435 VWALGNIIGDGPQLRDYVI 453 (845)
Q Consensus 435 ~~~L~nl~~~~~~~~~~l~ 453 (845)
-.+|--++.++.+..+.+.
T Consensus 655 Dn~LdIiae~d~EWAKrI~ 673 (791)
T KOG1222|consen 655 DNALDIIAEHDKEWAKRIA 673 (791)
T ss_pred HHHHHHHHHhhHHHHHHHh
Confidence 9999999998887776654
|
|
| >KOG4199|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-12 Score=125.29 Aligned_cols=321 Identities=14% Similarity=0.209 Sum_probs=248.2
Q ss_pred cCChHHHHHhh---CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHHHHHHHHHHHhhcCC
Q psy12605 130 AGAVPLFLRLL---MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 130 ~g~i~~L~~lL---~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~l~~~~ 205 (845)
.|+.+.++-++ .+++..+..+++.+|..+....|+ ++++.+...++.+|.... +.++--.....+..-|...
T Consensus 103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h 178 (461)
T KOG4199|consen 103 NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH 178 (461)
T ss_pred CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh
Confidence 46666555544 466788888999999998866664 456677888999886443 4456666677777777777
Q ss_pred CCCCChhHHhhHHHHHHhhcccC-CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC---------hhh
Q psy12605 206 DPPPSMSTIIELLPALNILIHHH-DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG---------NDQ 275 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~---------~~~ 275 (845)
+.........++++.+.+.+..+ ..+ +...++|+++.|...+ .+.
T Consensus 179 E~nrQ~~m~~~il~Li~~~l~~~gk~~-------------------------~VRel~~a~r~l~~dDDiRV~fg~ah~h 233 (461)
T KOG4199|consen 179 EVNRQLFMELKILELILQVLNREGKTR-------------------------TVRELYDAIRALLTDDDIRVVFGQAHGH 233 (461)
T ss_pred HHHHHHHHHhhHHHHHHHHHcccCccH-------------------------HHHHHHHHHHHhcCCCceeeecchhhHH
Confidence 66666667778999998777653 334 7788899999886533 345
Q ss_pred HHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC-ch---hhHHHHHHHHH
Q psy12605 276 IQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP-KE---KICKEAVWFLS 350 (845)
Q Consensus 276 ~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~-~~---~~~~~a~~~L~ 350 (845)
.+.+...|++..|++.+.- -++.+...++.+|+.++.. ++..+.+.+.|++..++.++.+. +. .+.+.++..|+
T Consensus 234 Ar~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr-~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLr 312 (461)
T KOG4199|consen 234 ARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVR-DEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLR 312 (461)
T ss_pred HHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHH-HHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHH
Confidence 6788888999999999943 3578889999999999876 66788899999999999999773 33 35578888898
Q ss_pred HhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCC--H
Q psy12605 351 NITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPH--S 428 (845)
Q Consensus 351 nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~--~ 428 (845)
.+ +++++....+++.|+.+.++.++..+. ++|.+..+++.+++-++-..+++...+++.|+-...++.+.... .
T Consensus 313 al-AG~DsvKs~IV~~gg~~~ii~l~~~h~---~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a 388 (461)
T KOG4199|consen 313 AL-AGSDSVKSTIVEKGGLDKIITLALRHS---DDPLVIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAA 388 (461)
T ss_pred HH-hCCCchHHHHHHhcChHHHHHHHHHcC---CChHHHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHH
Confidence 88 566778899999999999999998876 68999999999999999999999999999999999999998654 4
Q ss_pred HHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccC-CCCChhHHHHHHHHHHHhhcC
Q psy12605 429 NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 429 ~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~-~~~~~~~~~~~~~~l~nL~~~ 487 (845)
.++.+++|++.|++..+.+.+..++..|+ +.|+..-. ++. .....+-.+|+.|...
T Consensus 389 ~vQrnac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~h~--tce~~akaALRDLGc~ 445 (461)
T KOG4199|consen 389 QVQRNACNMIRNIVVRSAENRTILLANGI-EKLIRTAKANHE--TCEAAAKAALRDLGCD 445 (461)
T ss_pred HHHHHHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhcCc--cHHHHHHHHHHhcCcc
Confidence 68999999999999999999998888774 55554443 332 3334444456655443
|
|
| >KOG1293|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.7e-12 Score=136.88 Aligned_cols=403 Identities=15% Similarity=0.114 Sum_probs=242.2
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhhHHHHHHc
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQTQEVVAA 130 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~~~~i~~~ 130 (845)
..+.+.||+....|....+..+...+ +....++..|.++.|..++... ..++.+.+.+.++..+..+..+....+.+.
T Consensus 16 ~~L~~~dpe~lvrai~~~kN~vig~~-~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~svL~~ 94 (678)
T KOG1293|consen 16 YRLLHLDPEQLVRAIYMSKNLVIGFT-DNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSVLRI 94 (678)
T ss_pred HhhhcCCHHHHHHHHHHhcchhhcCC-CccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHHHHH
Confidence 45667888888889999988877654 4566899999999999999533 345777888889999998888889999999
Q ss_pred CChHHHHHhhCCCC-hhHHHHHHHHHHHhcCCChhh-------------------------------------------H
Q psy12605 131 GAVPLFLRLLMSPH-SNVCEQAVWALGNIIGDGPQL-------------------------------------------R 166 (845)
Q Consensus 131 g~i~~L~~lL~s~~-~~v~~~a~~~L~nla~~~~~~-------------------------------------------r 166 (845)
+.++.|+++|++++ ..+++.+++++.++-..++.. +
T Consensus 95 ~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~~hq 174 (678)
T KOG1293|consen 95 IELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTKDHQ 174 (678)
T ss_pred hhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccchhh
Confidence 99999999999998 889999999999997655311 0
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH---HhhcCCCCCCChhH-----HhhHHH--HHHhhcccCCchhhHHH
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV---NLCRNKDPPPSMST-----IIELLP--ALNILIHHHDTSVSIYL 236 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~---~l~~~~~~~~~~~~-----~~~~l~--~L~~ll~~~~~~~~~~~ 236 (845)
..+...|+.+.+.-++.. .+...|.+|..+++ ++..+++. ..+.. ..+..+ .+.+++++++..
T Consensus 175 ~Il~Na~i~ekI~~l~~~-~s~~~RlaaL~~~sr~~~iL~Nn~~-~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s----- 247 (678)
T KOG1293|consen 175 LILCNAGILEKINILLMY-LSSKLRLAALLCLSRGDRILRNNPL-GSMFLLGLLKDKGVNIRCVVTRLLKDPDFS----- 247 (678)
T ss_pred heeccccchhhHHHHHHh-hhHHHHHHHHHHhhccceeeecCch-hHHHHHHHHhccccchhhhhhhhhhCCCcc-----
Confidence 111111222222111111 13456666777777 55555422 11111 112222 233444555554
Q ss_pred HHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH-----HhcC--c-hh-hHHhhccCCchhhHHHHHHHH
Q psy12605 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV-----IDSG--V-VP-SLIPLLSHKEVKVQTASLRAV 307 (845)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-----~~~g--~-i~-~Lv~lL~~~~~~v~~~al~~L 307 (845)
.+..++.++.++-..+.+....+ .+.| . ++ ..+.++..|-......++...
T Consensus 248 --------------------~~l~sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~ 307 (678)
T KOG1293|consen 248 --------------------ERLRSLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLF 307 (678)
T ss_pred --------------------HHHHHHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhH
Confidence 44556666665544332111111 1111 0 00 111112222222222223333
Q ss_pred HHHhcCChhhHHHHhcCCccchhhHhhc------CCchhhHHHHHH---HHHHhhcCC-hHHHHHHHhcCChHHHHHHhh
Q psy12605 308 GNIVTGTDEQTQVILNCDALSHFPALLT------HPKEKICKEAVW---FLSNITAGN-QAQVQAVIDAGLLPKIIANLQ 377 (845)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~lL~------~~~~~~~~~a~~---~L~nl~~~~-~~~~~~l~~~~~i~~Lv~lL~ 377 (845)
+.++.--........+...++.+++++. ..++..+.-++. .+...+.+. ...++.+.+.-....+.....
T Consensus 308 c~~a~~~sklq~~~~e~~~~~~~~ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~ 387 (678)
T KOG1293|consen 308 CILARFASKLQLPQHEEATLKTTTELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPP 387 (678)
T ss_pred HHHHHHHHhhhhHHhhhhhhhhHHHHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccc
Confidence 3332211223334445556666666663 233433332221 122222221 122233333222222222222
Q ss_pred hcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCC
Q psy12605 378 KVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGV 457 (845)
Q Consensus 378 ~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~ 457 (845)
. .+......|+.++-+++..-...+..+-...+.++|++++..++..|...++.+|+|+.-+-...+..+++.|+
T Consensus 388 ~-----kd~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ng 462 (678)
T KOG1293|consen 388 I-----KDHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNG 462 (678)
T ss_pred c-----ccHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCc
Confidence 2 35677777777777776543334444555678999999999999999999999999999988889999999999
Q ss_pred hHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 458 VPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 458 l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
++.+.+++.+.+. ..+....|+|+++..+.
T Consensus 463 Id~l~s~~~~~~~-n~r~~~~~~Lr~l~f~~ 492 (678)
T KOG1293|consen 463 IDILESMLTDPDF-NSRANSLWVLRHLMFNC 492 (678)
T ss_pred HHHHHHHhcCCCc-hHHHHHHHHHHHHHhcc
Confidence 9999999986654 67788999999987655
|
|
| >KOG1241|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-12 Score=138.13 Aligned_cols=632 Identities=14% Similarity=0.153 Sum_probs=347.3
Q ss_pred hhhcHHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHHhcC-CHHHHHHhhccCCChhHHHHHHHHHHHHhc
Q psy12605 42 AQVNLDMLVVEAARKD--NPELQLLAVQSARKLLSSDKNPPIEALIHSG-ILPVLVECLERSDRPNLQFEAAWALTNIAS 118 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g-~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~ 118 (845)
.+.-+..++ .....+ +..+++.|+.+|...+...+. +...=.+.+ ++...++.- .+++.+++..|..+|.++.+
T Consensus 170 sN~iLtaIv-~gmrk~e~s~~vRLaa~~aL~nsLef~~~-nF~~E~ern~iMqvvcEat-q~~d~~i~~aa~~ClvkIm~ 246 (859)
T KOG1241|consen 170 SNDILTAIV-QGMRKEETSAAVRLAALNALYNSLEFTKA-NFNNEMERNYIMQVVCEAT-QSPDEEIQVAAFQCLVKIMS 246 (859)
T ss_pred HhHHHHHHH-hhccccCCchhHHHHHHHHHHHHHHHHHH-hhccHhhhceeeeeeeecc-cCCcHHHHHHHHHHHHHHHH
Confidence 444444555 444443 456899999999887764321 111112223 344444554 56788999999999999998
Q ss_pred CChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH---HhcCChhhHHhhhcCCCCHHHHHHHH
Q psy12605 119 GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV---INMGVVPPLLSFIKPDIPISFLRNVT 195 (845)
Q Consensus 119 ~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i---~~~g~i~~Lv~ll~~~~~~~~~~~a~ 195 (845)
-..+....-+.....+.-+.-++++++++..++.....++|.+.-+..... .+.|.- + .-..
T Consensus 247 LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~-p-----------~~~~--- 311 (859)
T KOG1241|consen 247 LYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLP-P-----------SSKY--- 311 (859)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-c-----------hhhH---
Confidence 778888777777788888888999999999999999999995432221111 111111 1 0000
Q ss_pred HHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhh
Q psy12605 196 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ 275 (845)
Q Consensus 196 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~ 275 (845)
+.+ ......+|.|..++...|++-..--| | .-..|-.||.-.+.
T Consensus 312 -----fa~--------~a~~~v~P~Ll~~L~kqde~~d~DdW------n------------p~kAAg~CL~l~A~----- 355 (859)
T KOG1241|consen 312 -----FAR--------QALQDVVPVLLELLTKQDEDDDDDDW------N------------PAKAAGVCLMLFAQ----- 355 (859)
T ss_pred -----HHH--------HHHhHhhHHHHHHHHhCCCCcccccC------c------------HHHHHHHHHHHHHH-----
Confidence 000 12456778888887653222000000 0 22233333333332
Q ss_pred HHHHHhcCchhhHHhhc----cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHH
Q psy12605 276 IQMVIDSGVVPSLIPLL----SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351 (845)
Q Consensus 276 ~~~~~~~g~i~~Lv~lL----~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~n 351 (845)
.+...++++.++++ ++++..-+.+|.-++|.+-.+.+..+..-+-.+++|.++.++.++.-.++..+.|+++.
T Consensus 356 ---~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgr 432 (859)
T KOG1241|consen 356 ---CVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGR 432 (859)
T ss_pred ---HhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHH
Confidence 22344555555555 67889999999999999988876666555666899999999999888999999999999
Q ss_pred hhcCChHHHHH-HHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHH-----HHHc---CChHHHHHh
Q psy12605 352 ITAGNQAQVQA-VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE-----VVAA---GAVPLFLRL 422 (845)
Q Consensus 352 l~~~~~~~~~~-l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-----l~~~---g~i~~Lv~l 422 (845)
++.+.++.+.. ......++.+++-|.+ .|.+-.++||++.+++.+..+.... .... ..+..|++.
T Consensus 433 I~d~l~e~~~n~~~l~~~l~~l~~gL~D------ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~ 506 (859)
T KOG1241|consen 433 IADFLPEAIINQELLQSKLSALLEGLND------EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKV 506 (859)
T ss_pred HHhhchhhcccHhhhhHHHHHHHHHhhh------CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhh
Confidence 98877644322 2234566677777765 6899999999999998543321110 1111 112223333
Q ss_pred hCC---CCHHHHHHHHHHHHHhhcCChHHHHHHHhCC---ChHHHHh-----ccCCCC---ChhHHHHHHHHHHHhhcCC
Q psy12605 423 LMS---PHSNVCEQAVWALGNIIGDGPQLRDYVINMG---VVPPLLS-----FIKPDI---PISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 423 L~~---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g---~l~~L~~-----ll~~~~---~~~~~~~~~~~l~nL~~~~ 488 (845)
-+. .....|..|..+|+.+...+++........- .+..|-. .+...+ -.+++...|.+|..+-+..
T Consensus 507 tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~ 586 (859)
T KOG1241|consen 507 TDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQSIIRKV 586 (859)
T ss_pred ccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHHHHHHc
Confidence 222 3457999999999999987765433332211 1111111 222111 1356667788888877766
Q ss_pred CCCCChhHHHhHHHHHHHhhcCCChhHH-HHHH------HHhhhcCchhhHHHHhhhhhhHHHHhhhccC---CCCcccc
Q psy12605 489 DPPPSMSTIIELLPALNILIHHHDTSVS-IYLW------LSIIEKNPQISKILVSKMKVCSRYLYYLSHN---SGPMSCQ 558 (845)
Q Consensus 489 ~~~~~~~~~~~~l~~l~~ll~~~d~~v~-~~~~------l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~---~~~~~~~ 558 (845)
.+ ........++..+.+++.+.+..+. ..++ ...|..+-. ...+.+..||... ..+-++-
T Consensus 587 ~~-~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~---------kym~~f~pyL~~gL~n~~e~qVc 656 (859)
T KOG1241|consen 587 GS-DIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFA---------KYMPAFKPYLLMGLSNFQEYQVC 656 (859)
T ss_pred cc-cchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHH---------HHHHHHHHHHHHHhhcchHHHHH
Confidence 43 2233345678888888888444322 2221 222221110 1223333333221 1111112
Q ss_pred cccccccccccCCChhhHHHHHhCCcccchHHhhcCC--ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhh
Q psy12605 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP--KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636 (845)
Q Consensus 559 ~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~--~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~ 636 (845)
.++...++.++-.=+.. -.....+++..|+..|+++ +.+++..++.+++.|+..-..+.+...+ .++-+++.
T Consensus 657 ~~aVglVgdl~raL~~~-i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~FgDIAlaIg~~F~~Yl~-----~vm~llq~ 730 (859)
T KOG1241|consen 657 AAAVGLVGDLARALEDD-ILPYCDELMTVLVQCLSSPNLHRNVKPAILSVFGDIALAIGADFEPYLE-----MVMPLLQQ 730 (859)
T ss_pred HHHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHccCccccccccchHHHHHHHHHHHHHHhHHHHHH-----HHHHHHHH
Confidence 22333333332100000 0112334556777778876 5688888999998887543333333332 22222221
Q ss_pred hhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHH
Q psy12605 637 RSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716 (845)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 716 (845)
.+. -+..+.-..+ ...-.++|+.+.
T Consensus 731 as~-----------------------------------~~~d~~~~~~--------------------~dYvd~LRe~~l 755 (859)
T KOG1241|consen 731 ASS-----------------------------------VQTDPADDSM--------------------VDYVDELREGIL 755 (859)
T ss_pred HHh-----------------------------------ccCCCCcccH--------------------HHHHHHHHHHHH
Confidence 100 0000000000 111124666666
Q ss_pred HHHHhhcccCCHHHHHHHHHcCCchHHhhhhcc------ccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-hChHHHH
Q psy12605 717 WAISNLTISGNRDQVAKLVQEGVIPPFCDLLSC------KDAQVIQVVLDGINNMLKMADAQVETLANMIEE-CGGLDKI 789 (845)
Q Consensus 717 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~------~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e-~g~~~~L 789 (845)
.+-..+... -..+.....-.-.++.++.+++. .++.+...|+..|..|....+++. .+.+.. .-..+.|
T Consensus 756 eay~gi~qg-lk~~~~~~~~~p~v~~I~sfi~~I~~e~~~~~~~~~~a~GlIgDL~~~fg~~~---~~~~~~~~~i~~~L 831 (859)
T KOG1241|consen 756 EAYTGIIQG-LKTHADVMLVQPYVPHIISFIDRIAAEPDVSEALHAAALGLIGDLATMFGKGV---IKLFLDEDWIKDFL 831 (859)
T ss_pred HHHHHHHHH-hhcccchhhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHcccch---hhhhcchHHHHHHH
Confidence 555555411 11111122223466677776653 235677888888999987766542 122222 3334455
Q ss_pred HhhhcCCCHHHHHHHHHHHHHh
Q psy12605 790 EMLQNHENVEIYKLAYDIIERY 811 (845)
Q Consensus 790 ~~l~~~~~~~v~~~a~~~l~~~ 811 (845)
..-..+.+...++.|.|..+..
T Consensus 832 ~~~~k~~~~~tK~~A~wa~e~i 853 (859)
T KOG1241|consen 832 NEGRKSSTQKTKDLARWATEEI 853 (859)
T ss_pred HHhhhhhhhhhHHHHHHHHHHH
Confidence 5444556666777777776654
|
|
| >KOG2122|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.4e-12 Score=147.36 Aligned_cols=378 Identities=17% Similarity=0.177 Sum_probs=267.5
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC---ChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP---HSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 92 ~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~---~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
.|..+|. .++ +...+..|..++. +++....++..|.+|.|+++|--+ +.+.+..|-.+|.||.-..++-+..
T Consensus 201 sllsml~-t~D---~ee~ar~fLemSs-s~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~ 275 (2195)
T KOG2122|consen 201 SLLSMLG-TDD---EEEMARTFLEMSS-SPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRG 275 (2195)
T ss_pred HHhhhcc-cCC---HHHHHHHHHHhcc-CchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhh
Confidence 5555553 233 4566677888875 578888899999999999999765 4577888999999998766654433
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
=.+..+++ +|. .++..+..+-.-+-...+... ......
T Consensus 276 RRE~kvL~----lLe-----QIraYC~~~~~~lqar~~~~a-----------------pa~~~H---------------- 313 (2195)
T KOG2122|consen 276 RREKKVLH----LLE-----QIRAYCETCWTWLQARGPAIA-----------------PASDEH---------------- 313 (2195)
T ss_pred HHHHHHHH----HHH-----HHHHHHHHHHHHHHhcCCCCC-----------------Ccccch----------------
Confidence 33322232 221 333333222222222221000 001111
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC------------CchhhHHHHHHHHHHHhcCChh
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH------------KEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~------------~~~~v~~~al~~L~nl~~~~~~ 316 (845)
-...|..+|..++. +.+.+..+.+-|+++.+.+||.- ....++.+|..+|.||+.++..
T Consensus 314 --------~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~ 384 (2195)
T KOG2122|consen 314 --------QLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVA 384 (2195)
T ss_pred --------hhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccccccc
Confidence 22345555555554 45667777788998888887721 1235899999999999999877
Q ss_pred hHHHHhc-CCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH-HhcCChHHHHHHhhhcccccCChhHHHHHHH
Q psy12605 317 QTQVILN-CDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV-IDAGLLPKIIANLQKVGRIVLRPNLQFEAAW 394 (845)
Q Consensus 317 ~~~~i~~-~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l-~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~ 394 (845)
.+..+.. .|++..++..|.+..+++....+.+|.||+=..+...+.+ -+.|-+..|..+.... .....-...+.
T Consensus 385 NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~----~kEsTLKavLS 460 (2195)
T KOG2122|consen 385 NKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRN----KKESTLKAVLS 460 (2195)
T ss_pred chhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHh----cccchHHHHHH
Confidence 6666554 3889999999999888898889999999975544444444 5578888888877665 35566678899
Q ss_pred HHHHHhcCChHhHHHHHHc-CChHHHHHhhCCCC----HHHHHHHHHHHHHhhc---CChHHHHHHHhCCChHHHHhccC
Q psy12605 395 ALTNIASGTSAQTQEVVAA-GAVPLFLRLLMSPH----SNVCEQAVWALGNIIG---DGPQLRDYVINMGVVPPLLSFIK 466 (845)
Q Consensus 395 ~L~~l~~~~~~~~~~l~~~-g~i~~Lv~lL~~~~----~~v~~~a~~~L~nl~~---~~~~~~~~l~~~g~l~~L~~ll~ 466 (845)
+|+||+.++.++...|+.- |++..|+.+|.... -.+.+.+-..|.|.+. ..+.+|+.+.+...+..|++.|+
T Consensus 461 ALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~LK 540 (2195)
T KOG2122|consen 461 ALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHLK 540 (2195)
T ss_pred HHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHhh
Confidence 9999999999999888876 88999999998663 3688899999999876 46778888888888888888887
Q ss_pred CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHh
Q psy12605 467 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLY 546 (845)
Q Consensus 467 ~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ 546 (845)
+++- .++-++|.+|+||
T Consensus 541 S~SL-TiVSNaCGTLWNL-------------------------------------------------------------- 557 (2195)
T KOG2122|consen 541 SHSL-TIVSNACGTLWNL-------------------------------------------------------------- 557 (2195)
T ss_pred hcce-EEeecchhhhhhh--------------------------------------------------------------
Confidence 6542 4444555555554
Q ss_pred hhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCC
Q psy12605 547 YLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 614 (845)
Q Consensus 547 ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~ 614 (845)
+..+.+-.+.+.+.|++++|..++.+.+..+.+.++.+|-|+...-
T Consensus 558 ----------------------SAR~p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~R 603 (2195)
T KOG2122|consen 558 ----------------------SARSPEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFR 603 (2195)
T ss_pred ----------------------hcCCHHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCC
Confidence 4445555678888999999999999999999999999999998764
|
|
| >KOG2023|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-11 Score=128.90 Aligned_cols=623 Identities=16% Similarity=0.176 Sum_probs=335.3
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHH-HHh---cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEA-LIH---SGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~-i~~---~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
.++.++ ++|.++|...+..|..+|.+++.-... ..+. ... .-.+|+++++.+ +.+|.+|..|..++..+--..
T Consensus 129 lLp~L~-~~L~s~d~n~~EgA~~AL~KIcEDsa~-~lds~~~~rpl~~mipkfl~f~~-h~spkiRs~A~~cvNq~i~~~ 205 (885)
T KOG2023|consen 129 LLPQLC-ELLDSPDYNTCEGAFGALQKICEDSAQ-FLDSDVLTRPLNIMIPKFLQFFK-HPSPKIRSHAVGCVNQFIIIQ 205 (885)
T ss_pred HHHHHH-HHhcCCcccccchhHHHHHHHHhhhHH-HHhhhcccCchHHhHHHHHHHHh-CCChhHHHHHHhhhhheeecC
Confidence 478888 899999999999999999998763211 1111 000 125999999995 678999999999998876432
Q ss_pred hhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh--cCChhhHHhhhcCCCCHHHHHHHHHH
Q psy12605 121 SAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN--MGVVPPLLSFIKPDIPISFLRNVTWV 197 (845)
Q Consensus 121 ~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~--~g~i~~Lv~ll~~~~~~~~~~~a~~~ 197 (845)
+.. ..+. ...++.+..+-.+.++++|.+.+.+|..+-...+ +.+.- .++++.++...+.. ++++...|+..
T Consensus 206 ~qa--l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~---dkl~phl~~IveyML~~tqd~-dE~VALEACEF 279 (885)
T KOG2023|consen 206 TQA--LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRP---DKLVPHLDNIVEYMLQRTQDV-DENVALEACEF 279 (885)
T ss_pred cHH--HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcH---HhcccchHHHHHHHHHHccCc-chhHHHHHHHH
Confidence 221 1221 2456777777788999999999999999874433 22221 13455555544444 55788889999
Q ss_pred HHHhhcCCCCCCC-hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhCh----------hhHHhhhhh-H----------
Q psy12605 198 IVNLCRNKDPPPS-MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNP----------QISKILVSK-M---------- 255 (845)
Q Consensus 198 L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~----------~~~~~~~~~-~---------- 255 (845)
...++....+... .......+|.|+.-+...+.+. .|...+. -|...+... .
T Consensus 280 wla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~------~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~e 353 (885)
T KOG2023|consen 280 WLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDI------ILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDE 353 (885)
T ss_pred HHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccH------HHhcCccccccCCchhhhccchhhhchhccCccccccc
Confidence 9999987733222 1244577788877665444331 1111000 000000000 0
Q ss_pred --------HHHHHHHHHHHHhhcCChhhHHHHHhcCchhh----HHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhc
Q psy12605 256 --------KILVDTVWALSYLTDGGNDQIQMVIDSGVVPS----LIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN 323 (845)
Q Consensus 256 --------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~----Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~ 323 (845)
+=-...-|.|+..+...-+...-+....+++. |-+.|.+++..++++++-++|.++.|. .+-++.
T Consensus 354 DdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc---M~g~~p 430 (885)
T KOG2023|consen 354 DDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGC---MQGFVP 430 (885)
T ss_pred cccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH---hhhccc
Confidence 00000112222222111111122223334444 444556778899999999999998653 222333
Q ss_pred C--CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc
Q psy12605 324 C--DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401 (845)
Q Consensus 324 ~--~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~ 401 (845)
+ ..+|.++.+|+++.+-+|.-.||+|+..+..-...- -+.-+.|.|-.+++.--+ .+.+||+.||.++.-+-.
T Consensus 431 ~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~---~~~~f~pvL~~ll~~llD--~NK~VQEAAcsAfAtleE 505 (885)
T KOG2023|consen 431 HLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDS---RDEYFKPVLEGLLRRLLD--SNKKVQEAACSAFATLEE 505 (885)
T ss_pred chHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCC---hHhhhHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHH
Confidence 2 367888999999999999999999998643211000 001123333333332211 378999999999998764
Q ss_pred CCh-HhHHHHHHcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCC---hHHHHHHHhCCChHHHHhcc---CCCCC-
Q psy12605 402 GTS-AQTQEVVAAGAVPLFLRLL---MSPHSNVCEQAVWALGNIIGDG---PQLRDYVINMGVVPPLLSFI---KPDIP- 470 (845)
Q Consensus 402 ~~~-~~~~~l~~~g~i~~Lv~lL---~~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~~~g~l~~L~~ll---~~~~~- 470 (845)
... +....+ ...+..|+..+ +..+--+...|+.+|+.-+++. +.+.+. .+++|+.-. +++++
T Consensus 506 ~A~~eLVp~l--~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~Yiqi-----LmPPLi~KW~~lsd~DKd 578 (885)
T KOG2023|consen 506 EAGEELVPYL--EYILDQLVFAFGKYQKKNLLILYDAIGTLADSVGHALNKPAYIQI-----LMPPLIEKWELLSDSDKD 578 (885)
T ss_pred hccchhHHHH--HHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHHHhcCcHHHHHH-----hccHHHHHHHhcCcccch
Confidence 321 111100 01122222222 2345557778888888766532 333332 467777543 33332
Q ss_pred -hhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHH---HHhhcC--CChhHH--------HHH-HHHhhhcCchh-hHHH
Q psy12605 471 -ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPAL---NILIHH--HDTSVS--------IYL-WLSIIEKNPQI-SKIL 534 (845)
Q Consensus 471 -~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l---~~ll~~--~d~~v~--------~~~-~l~~l~~~~~~-~~~~ 534 (845)
..+++.....-+-|-.++.|.. ......++..+ .+++.. .|+.+. .++ +++-|..+-.. ...+
T Consensus 579 LfPLLEClSsia~AL~~gF~P~~-~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~L 657 (885)
T KOG2023|consen 579 LFPLLECLSSIASALGVGFLPYA-QPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPL 657 (885)
T ss_pred HHHHHHHHHHHHHHHhccccccC-HHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHH
Confidence 2334444444444555554322 22223333322 222221 222211 111 13333332221 2234
Q ss_pred HhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCC
Q psy12605 535 VSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 614 (845)
Q Consensus 535 ~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~ 614 (845)
+..+++...++.++......+. ..+...+|.+.....+.. .=...++++.+-.-+...+-++...|+|+++.++..-
T Consensus 658 va~snl~~lll~C~~D~~peVR--QS~FALLGDltk~c~~~v-~p~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~ 734 (885)
T KOG2023|consen 658 VAQSNLLDLLLQCLQDEVPEVR--QSAFALLGDLTKACFEHV-IPNLADFLPILGANLNPENISVCNNAIWAIGEIALKM 734 (885)
T ss_pred hhhccHHHHHHHHhccCChHHH--HHHHHHHHHHHHHHHHhc-cchHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHh
Confidence 4555666666677666554432 233444444432211100 0001133444444444456789999999999998432
Q ss_pred HHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhh
Q psy12605 615 QAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFA 694 (845)
Q Consensus 615 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (845)
....+..+. .++..|+.++.
T Consensus 735 g~~~~~~v~-~vl~~L~~iin----------------------------------------------------------- 754 (885)
T KOG2023|consen 735 GLKMKQYVS-PVLEDLITIIN----------------------------------------------------------- 754 (885)
T ss_pred chhhhhHHH-HHHHHHHHHhc-----------------------------------------------------------
Confidence 111111111 11222222221
Q ss_pred hhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhcc-ccHHHHHHHHHHHHHHHHhhHHH
Q psy12605 695 FISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSC-KDAQVIQVVLDGINNMLKMADAQ 772 (845)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~-~d~~~~~~al~~L~~l~~~~~~~ 772 (845)
.......+-+..+.+++.+. ..+|+....-.+ .++.+-+..|.. .|.+-+..|..++++++...+.+
T Consensus 755 ---------~~~~~~tllENtAITIGrLg-~~~Pe~vAp~l~-~f~~pWc~sl~~i~DneEK~sAFrG~c~mi~vNp~~ 822 (885)
T KOG2023|consen 755 ---------RQNTPKTLLENTAITIGRLG-YICPEEVAPHLD-SFMRPWCTSLRNIDDNEEKESAFRGLCNMINVNPSG 822 (885)
T ss_pred ---------ccCchHHHHHhhhhhhhhhh-ccCHHhcchhHH-HHHHHHHHHhcccccchhHHHHHHHHHHheeeCchh
Confidence 03344456667788888887 456665555444 455666665655 67888899999999999876654
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=1.9e-12 Score=133.43 Aligned_cols=255 Identities=17% Similarity=0.113 Sum_probs=198.9
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
-++.|+.+| .+++..+|..|+++|..+... .+++.+..++.++++.+|..|+++|+.+..... .
T Consensus 24 ~~~~L~~~L-~d~d~~vR~~A~~aL~~~~~~-----------~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~-~--- 87 (280)
T PRK09687 24 NDDELFRLL-DDHNSLKRISSIRVLQLRGGQ-----------DVFRLAIELCSSKNPIERDIGADILSQLGMAKR-C--- 87 (280)
T ss_pred cHHHHHHHH-hCCCHHHHHHHHHHHHhcCcc-----------hHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-c---
Confidence 377889999 577889999999999988632 377888899999999999999999999974321 1
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
...+++.|..++.++.+..++..|+.+|.+++...... ...++..+...+.++++.
T Consensus 88 --~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~~~~~D~~~~----------------- 143 (280)
T PRK09687 88 --QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY-----SPKIVEQSQITAFDKSTN----------------- 143 (280)
T ss_pred --hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc-----chHHHHHHHHHhhCCCHH-----------------
Confidence 11246777777656556789999999999997544211 123556666777777777
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccc
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~ 328 (845)
++..++++|..+. +...++.|+.+|.++++.|+..|+.+|+.+..+++ .+++
T Consensus 144 --------VR~~a~~aLg~~~-----------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~~ 195 (280)
T PRK09687 144 --------VRFAVAFALSVIN-----------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIRE 195 (280)
T ss_pred --------HHHHHHHHHhccC-----------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHHH
Confidence 8889999997553 22457889999999999999999999999833322 3567
Q ss_pred hhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH
Q psy12605 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ 408 (845)
Q Consensus 329 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (845)
.|+.++.+.+..+|..|.+.|+.+- + ...+|.|++.+.++ .++..++.+|+++-..
T Consensus 196 ~L~~~L~D~~~~VR~~A~~aLg~~~--~---------~~av~~Li~~L~~~-------~~~~~a~~ALg~ig~~------ 251 (280)
T PRK09687 196 AFVAMLQDKNEEIRIEAIIGLALRK--D---------KRVLSVLIKELKKG-------TVGDLIIEAAGELGDK------ 251 (280)
T ss_pred HHHHHhcCCChHHHHHHHHHHHccC--C---------hhHHHHHHHHHcCC-------chHHHHHHHHHhcCCH------
Confidence 7999999999999999999999862 1 24789999999763 3778899999988642
Q ss_pred HHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHH
Q psy12605 409 EVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGN 440 (845)
Q Consensus 409 ~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~n 440 (845)
.+++.|.+++. .++..++..+.++|..
T Consensus 252 -----~a~p~L~~l~~~~~d~~v~~~a~~a~~~ 279 (280)
T PRK09687 252 -----TLLPVLDTLLYKFDDNEIITKAIDKLKR 279 (280)
T ss_pred -----hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence 37899999997 8899999999998753
|
|
| >KOG1222|consensus | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.1e-10 Score=120.22 Aligned_cols=362 Identities=14% Similarity=0.171 Sum_probs=261.1
Q ss_pred HHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC
Q psy12605 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 82 ~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~ 161 (845)
..+....++..||+.|.. ++.++.......|.+++-. .+++..+.+.|.|+.|++++...+++++...++.|.|++.+
T Consensus 298 lKMrrkniV~mLVKaLdr-~n~~Ll~lv~~FLkKLSIf-~eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD 375 (791)
T KOG1222|consen 298 LKMRRKNIVAMLVKALDR-SNSSLLTLVIKFLKKLSIF-DENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFD 375 (791)
T ss_pred HHHHHHhHHHHHHHHHcc-cchHHHHHHHHHHHHhhhh-ccchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhcccc
Confidence 346678899999999964 4567778888889999865 67888899999999999999999999999999999999977
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCchhhHHHHHHH
Q psy12605 162 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTSVSIYLWLSI 240 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l 240 (845)
+ ..|..++..|.+|.+..++.+++. ..-|+..+..++.+. ....+.....+++.+.+.+-. .+.+
T Consensus 376 ~-glr~KMv~~GllP~l~~ll~~d~~---~~iA~~~lYh~S~dD-~~K~MfayTdci~~lmk~v~~~~~~~--------- 441 (791)
T KOG1222|consen 376 S-GLRPKMVNGGLLPHLASLLDSDTK---HGIALNMLYHLSCDD-DAKAMFAYTDCIKLLMKDVLSGTGSE--------- 441 (791)
T ss_pred c-cccHHHhhccchHHHHHHhCCccc---chhhhhhhhhhccCc-HHHHHHHHHHHHHHHHHHHHhcCCce---------
Confidence 5 689999999999999999988754 344677788887766 345566777899998876543 4444
Q ss_pred hhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHH
Q psy12605 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQ 319 (845)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~ 319 (845)
+-........+++-... +.+.+++..++..|+..- +..++ --++.++|++++....+.
T Consensus 442 ----------------vdl~lia~ciNl~lnkR-NaQlvceGqgL~~LM~ra~k~~D~----lLmK~vRniSqHeg~tqn 500 (791)
T KOG1222|consen 442 ----------------VDLALIALCINLCLNKR-NAQLVCEGQGLDLLMERAIKSRDL----LLMKVVRNISQHEGATQN 500 (791)
T ss_pred ----------------ecHHHHHHHHHHHhccc-cceEEecCcchHHHHHHHhcccch----HHHHHHHHhhhccchHHH
Confidence 22222212223433222 234555655666665543 33333 235678899888776666
Q ss_pred HHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 320 VILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 320 ~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
.+++ .+..|...++. .++....+++++++|+.....+-.+.+-+..++|.+-..|..+. ...++..+..-+++.
T Consensus 501 ~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga---~eddLvL~~vi~~GT 575 (791)
T KOG1222|consen 501 MFID--YVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGA---DEDDLVLQIVIACGT 575 (791)
T ss_pred HHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCc---cchhhhhHHHHHhhh
Confidence 6664 45556666654 45677889999999998776666566667899999988888764 456777777777776
Q ss_pred HhcCChHhHHHHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChHHHHHHHh-CCChHHHHhccCCCCChhHHH
Q psy12605 399 IASGTSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQLRDYVIN-MGVVPPLLSFIKPDIPISFLR 475 (845)
Q Consensus 399 l~~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-~g~l~~L~~ll~~~~~~~~~~ 475 (845)
++.. ......+..+|.++.|+++|+. .+.+...+.+++...+..+.. .|..+.+ ...-..|+.++... +.++++
T Consensus 576 ~a~d-~~cA~Lla~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~-tr~~miket~~~AylIDLMHDk-N~eiRk 652 (791)
T KOG1222|consen 576 MARD-LDCARLLAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHEL-TRRLMIKETALGAYLIDLMHDK-NAEIRK 652 (791)
T ss_pred hhhh-hHHHHHhCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHH-HHHHHHhhccchHHHHHHHhcc-cHHHHH
Confidence 6653 3456677788999999999985 577888999999999998844 4555544 44445677777654 347777
Q ss_pred HHHHHHHHhhcCC
Q psy12605 476 NVTWVIVNLCRNK 488 (845)
Q Consensus 476 ~~~~~l~nL~~~~ 488 (845)
.|-.++--++.+.
T Consensus 653 VCDn~LdIiae~d 665 (791)
T KOG1222|consen 653 VCDNALDIIAEHD 665 (791)
T ss_pred HHHHHHHHHHHhh
Confidence 7777776666443
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.2e-11 Score=127.48 Aligned_cols=255 Identities=15% Similarity=0.063 Sum_probs=198.6
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
-.++.|..+|.+++..++..++++|+.+.... +++.+..++.++ +..+|..++++|..+-.....
T Consensus 23 ~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~-----------~~~~l~~ll~~~-d~~vR~~A~~aLg~lg~~~~~--- 87 (280)
T PRK09687 23 LNDDELFRLLDDHNSLKRISSIRVLQLRGGQD-----------VFRLAIELCSSK-NPIERDIGADILSQLGMAKRC--- 87 (280)
T ss_pred ccHHHHHHHHhCCCHHHHHHHHHHHHhcCcch-----------HHHHHHHHHhCC-CHHHHHHHHHHHHhcCCCccc---
Confidence 36889999999999999999999999986321 356677777666 558999999999998653311
Q ss_pred hhHHhhHHHHHHhh-cccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 211 MSTIIELLPALNIL-IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 211 ~~~~~~~l~~L~~l-l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
...+++.|..+ ++++++. ++..|+.+|.++....... ...+++.+.
T Consensus 88 ---~~~a~~~L~~l~~~D~d~~-------------------------VR~~A~~aLG~~~~~~~~~-----~~~a~~~l~ 134 (280)
T PRK09687 88 ---QDNVFNILNNLALEDKSAC-------------------------VRASAINATGHRCKKNPLY-----SPKIVEQSQ 134 (280)
T ss_pred ---hHHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHhccccccccc-----chHHHHHHH
Confidence 34677888877 5667777 8999999999885433211 123456677
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
..+.++++.|+..++.+|+.+-. ..+++.|+.++.++++.+|..|+.+|+.+..+++ ..+
T Consensus 135 ~~~~D~~~~VR~~a~~aLg~~~~-----------~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~---------~~~ 194 (280)
T PRK09687 135 ITAFDKSTNVRFAVAFALSVIND-----------EAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP---------DIR 194 (280)
T ss_pred HHhhCCCHHHHHHHHHHHhccCC-----------HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH---------HHH
Confidence 88888899999999999987631 1367899999999999999999999999844333 356
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 449 (845)
+.|+..+.+ .++.|+..|+++|+.+-.. .+++.|++.+.+++ ++..++.+|+++...
T Consensus 195 ~~L~~~L~D-----~~~~VR~~A~~aLg~~~~~-----------~av~~Li~~L~~~~--~~~~a~~ALg~ig~~----- 251 (280)
T PRK09687 195 EAFVAMLQD-----KNEEIRIEAIIGLALRKDK-----------RVLSVLIKELKKGT--VGDLIIEAAGELGDK----- 251 (280)
T ss_pred HHHHHHhcC-----CChHHHHHHHHHHHccCCh-----------hHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-----
Confidence 778888877 4899999999999986432 47999999999876 778899999998753
Q ss_pred HHHHhCCChHHHHhccCCCCChhHHHHHHHHHH
Q psy12605 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 482 (845)
Q Consensus 450 ~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~ 482 (845)
..++.|..++..+.+..+.+.+.|++.
T Consensus 252 ------~a~p~L~~l~~~~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 252 ------TLLPVLDTLLYKFDDNEIITKAIDKLK 278 (280)
T ss_pred ------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence 257888899986667788888888765
|
|
| >PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.6e-10 Score=129.84 Aligned_cols=314 Identities=17% Similarity=0.174 Sum_probs=223.4
Q ss_pred ChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhh
Q psy12605 102 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSF 181 (845)
Q Consensus 102 ~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~l 181 (845)
++.-+..++.-|..+...+.+.. .+.+..++++.+.+...+.-+.-++..+...+++..-. ++..+.+=
T Consensus 19 ~~~~~~~~l~kli~~~~~G~~~~------~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~~~~~l-----~~n~l~kd 87 (526)
T PF01602_consen 19 DISKKKEALKKLIYLMMLGYDIS------FLFMEVIKLISSKDLELKRLGYLYLSLYLHEDPELLIL-----IINSLQKD 87 (526)
T ss_dssp HHHHHHHHHHHHHHHHHTT---G------STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSHHHHHH-----HHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCCCc------hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcchhHHHH-----HHHHHHHh
Confidence 44555655555554443222222 58899999999999999999999999999877763222 35666666
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHH
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDT 261 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 261 (845)
+.++ +..++..|+.++++++. .......++.+.+++.++++. ++..|
T Consensus 88 l~~~-n~~~~~lAL~~l~~i~~-------~~~~~~l~~~v~~ll~~~~~~-------------------------VRk~A 134 (526)
T PF01602_consen 88 LNSP-NPYIRGLALRTLSNIRT-------PEMAEPLIPDVIKLLSDPSPY-------------------------VRKKA 134 (526)
T ss_dssp HCSS-SHHHHHHHHHHHHHH-S-------HHHHHHHHHHHHHHHHSSSHH-------------------------HHHHH
T ss_pred hcCC-CHHHHHHHHhhhhhhcc-------cchhhHHHHHHHHHhcCCchH-------------------------HHHHH
Confidence 7766 45789999999999872 234567888899999998887 99999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhh
Q psy12605 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKI 341 (845)
Q Consensus 262 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~ 341 (845)
+.++..+....++... .. +++.+..+|.++++.++.+|+.++..+ ..++.....+. ...+..|.+++...++-.
T Consensus 135 ~~~l~~i~~~~p~~~~---~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~-~~~~~~L~~~l~~~~~~~ 208 (526)
T PF01602_consen 135 ALALLKIYRKDPDLVE---DE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLI-PKLIRILCQLLSDPDPWL 208 (526)
T ss_dssp HHHHHHHHHHCHCCHH---GG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHH-HHHHHHHHHHHTCCSHHH
T ss_pred HHHHHHHhccCHHHHH---HH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhH-HHHHHHhhhcccccchHH
Confidence 9999988876665322 22 688999999999999999999999999 33332211111 134556666667889999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHH
Q psy12605 342 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 421 (845)
Q Consensus 342 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~ 421 (845)
+...+.++..++...+..... ..+++.+..++.+. ++.+..+++.++..+..... .-..+++.|..
T Consensus 209 q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~-----~~~V~~e~~~~i~~l~~~~~------~~~~~~~~L~~ 274 (526)
T PF01602_consen 209 QIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS-----SPSVVYEAIRLIIKLSPSPE------LLQKAINPLIK 274 (526)
T ss_dssp HHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHSSSHH------HHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc-----ccHHHHHHHHHHHHhhcchH------HHHhhHHHHHH
Confidence 999999999987776655321 45677888888864 78999999999998876543 33457889999
Q ss_pred hhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 422 LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 422 lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
++.+++++++..++.+|..++...+. .+ . .....+..+..+++..+++.+...+..++
T Consensus 275 lL~s~~~nvr~~~L~~L~~l~~~~~~---~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~ 332 (526)
T PF01602_consen 275 LLSSSDPNVRYIALDSLSQLAQSNPP---AV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLA 332 (526)
T ss_dssp HHTSSSHHHHHHHHHHHHHHCCHCHH---HH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH-
T ss_pred HhhcccchhehhHHHHHHHhhcccch---hh-h--hhhhhhheecCCCChhHHHHHHHHHhhcc
Confidence 99999999999999999999987622 11 1 12223334444555566666666666665
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E. |
| >PTZ00429 beta-adaptin; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.9e-08 Score=113.70 Aligned_cols=366 Identities=12% Similarity=0.102 Sum_probs=242.7
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
-++.++ .++.++|.+.+.-....+..+....++ .-.+ .+..+.+=+ .+++|.+|..|+++|+++-. ++..
T Consensus 69 LF~dVv-k~~~S~d~elKKLvYLYL~~ya~~~pe--lalL----aINtl~KDl-~d~Np~IRaLALRtLs~Ir~--~~i~ 138 (746)
T PTZ00429 69 LFVDVV-KLAPSTDLELKKLVYLYVLSTARLQPE--KALL----AVNTFLQDT-TNSSPVVRALAVRTMMCIRV--SSVL 138 (746)
T ss_pred HHHHHH-HHhCCCCHHHHHHHHHHHHHHcccChH--HHHH----HHHHHHHHc-CCCCHHHHHHHHHHHHcCCc--HHHH
Confidence 366777 788899998888887777776543322 1111 366777777 46789999999999988853 3333
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
.. .++.+.+.+.+.++.||..|+.++.++-..+++ .+.+.|.++.|.+++... +..+..+|+.+|..++..
T Consensus 139 e~-----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe---lv~~~~~~~~L~~LL~D~-dp~Vv~nAl~aL~eI~~~ 209 (746)
T PTZ00429 139 EY-----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ---LFYQQDFKKDLVELLNDN-NPVVASNAAAIVCEVNDY 209 (746)
T ss_pred HH-----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc---cccccchHHHHHHHhcCC-CccHHHHHHHHHHHHHHh
Confidence 33 567788899999999999999999999866553 344567788899988765 458999999999999875
Q ss_pred CCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCc
Q psy12605 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 284 (845)
.+ ..+....+.+..|...+..-+++ .+...+..|....-.+.. + ...+
T Consensus 210 ~~--~~l~l~~~~~~~Ll~~L~e~~EW-------------------------~Qi~IL~lL~~y~P~~~~--e---~~~i 257 (746)
T PTZ00429 210 GS--EKIESSNEWVNRLVYHLPECNEW-------------------------GQLYILELLAAQRPSDKE--S---AETL 257 (746)
T ss_pred Cc--hhhHHHHHHHHHHHHHhhcCChH-------------------------HHHHHHHHHHhcCCCCcH--H---HHHH
Confidence 52 22334455556666666666777 333444444332111111 1 1245
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+..+.+.|.+.++.|...|++++.++.... +.....+.. ...+.++.+ .+.+++++..++..+.-+....+..
T Consensus 258 l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~-rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~l---- 331 (746)
T PTZ00429 258 LTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTV-RVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNL---- 331 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHH-HHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHH----
Confidence 677888899999999999999999997542 222221111 233556666 4567789988888777775554432
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+... +..+.-... +...++.....+|..++..+. ... .+.-|.++..+.+.+++..++.+++.++.
T Consensus 332 f~~~-~~~Ff~~~~------Dp~yIK~~KLeIL~~Lane~N--v~~-----IL~EL~eYa~d~D~ef~r~aIrAIg~lA~ 397 (746)
T PTZ00429 332 LRTN-LDSFYVRYS------DPPFVKLEKLRLLLKLVTPSV--APE-----ILKELAEYASGVDMVFVVEVVRAIASLAI 397 (746)
T ss_pred HHHH-HHhhhcccC------CcHHHHHHHHHHHHHHcCccc--HHH-----HHHHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence 2211 222222222 345789999999999986442 222 23556677778899999999999999997
Q ss_pred CChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 444 DGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 444 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
..+...+ ..+..|++++.... ++...++-++.++.+..
T Consensus 398 k~~~~a~-----~cV~~Ll~ll~~~~--~~v~e~i~vik~Ilrky 435 (746)
T PTZ00429 398 KVDSVAP-----DCANLLLQIVDRRP--ELLPQVVTAAKDIVRKY 435 (746)
T ss_pred hChHHHH-----HHHHHHHHHhcCCc--hhHHHHHHHHHHHHHHC
Confidence 6554333 34667888886533 34556777888887654
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.9e-11 Score=120.72 Aligned_cols=197 Identities=19% Similarity=0.214 Sum_probs=162.2
Q ss_pred HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh
Q psy12605 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 163 (845)
Q Consensus 84 i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~ 163 (845)
+++.+-+..|+.+|+.+.+|.++..|..++.+.+.. +.+...+.+.|+++.+..+|+++++.+++.|+++|.|++.+ .
T Consensus 8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~-~ 85 (254)
T PF04826_consen 8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVN-D 85 (254)
T ss_pred CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCC-h
Confidence 356677899999998788999999999999998864 78889999999999999999999999999999999999965 4
Q ss_pred hhHHHHHhcCChhhHHhhh-cCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhh
Q psy12605 164 QLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIE 242 (845)
Q Consensus 164 ~~r~~i~~~g~i~~Lv~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~ 242 (845)
+++..+-. .++.+++.+ ..+-+..++..++.+|.||+...+... .....+|.++.++..++..
T Consensus 86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~---~l~~~i~~ll~LL~~G~~~----------- 149 (254)
T PF04826_consen 86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHH---MLANYIPDLLSLLSSGSEK----------- 149 (254)
T ss_pred hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhh---hHHhhHHHHHHHHHcCChH-----------
Confidence 57776643 466666654 334456889999999999987664322 2456899999999998888
Q ss_pred hChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC-chhhHHHHHHHHHHHhcC
Q psy12605 243 KNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK-EVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~al~~L~nl~~~ 313 (845)
++..++++|.+|+..... .+.++.++++..++.++... +.++...++..+.|+..+
T Consensus 150 --------------~k~~vLk~L~nLS~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~ 206 (254)
T PF04826_consen 150 --------------TKVQVLKVLVNLSENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINEN 206 (254)
T ss_pred --------------HHHHHHHHHHHhccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHh
Confidence 899999999999986554 45555888999999999664 678899999999999643
|
|
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-10 Score=139.77 Aligned_cols=276 Identities=17% Similarity=0.157 Sum_probs=212.2
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..++.++ +.|.++|+.++..|+..|..... .+.++.|++.| .++++.+|..|+.+|..+....
T Consensus 621 ~~~~~L~-~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL-~D~d~~VR~~Aa~aL~~l~~~~--- 683 (897)
T PRK13800 621 PSVAELA-PYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAAL-GDGAAAVRRAAAEGLRELVEVL--- 683 (897)
T ss_pred hhHHHHH-HHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHH-cCCCHHHHHHHHHHHHHHHhcc---
Confidence 3567788 89999999999999999987532 22589999999 5778899999999998885321
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
...+.|...|+++++.+|..|+.+|+.+...+ ...++..|..+ +..+|..|+.+|..+-.
T Consensus 684 -------~~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~-d~~VR~~Av~aL~~~~~ 743 (897)
T PRK13800 684 -------PPAPALRDHLGSPDPVVRAAALDVLRALRAGD------------AALFAAALGDP-DHRVRIEAVRALVSVDD 743 (897)
T ss_pred -------CchHHHHHHhcCCCHHHHHHHHHHHHhhccCC------------HHHHHHHhcCC-CHHHHHHHHHHHhcccC
Confidence 13467888899999999999999999875322 23456667666 55899999999987521
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
.+.|..++.++++. ++..++.+|..+... ...
T Consensus 744 --------------~~~l~~~l~D~~~~-------------------------VR~~aa~aL~~~~~~---------~~~ 775 (897)
T PRK13800 744 --------------VESVAGAATDENRE-------------------------VRIAVAKGLATLGAG---------GAP 775 (897)
T ss_pred --------------cHHHHHHhcCCCHH-------------------------HHHHHHHHHHHhccc---------cch
Confidence 13355677888887 888999999877543 223
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
.++.|..+++++++.++..|+.+|+.+... . ...+.+...|.+.+..+|..|+++|..+..
T Consensus 776 ~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~--~--------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~--------- 836 (897)
T PRK13800 776 AGDAVRALTGDPDPLVRAAALAALAELGCP--P--------DDVAAATAALRASAWQVRQGAARALAGAAA--------- 836 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHhcCCc--c--------hhHHHHHHHhcCCChHHHHHHHHHHHhccc---------
Confidence 367888999999999999999999988432 1 123557888999999999999999998732
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
...++.|+.+|.+ .++.||..|+++|..+. +++ ...+.|...+++++.+|+..|..+|..
T Consensus 837 --~~a~~~L~~~L~D-----~~~~VR~~A~~aL~~~~-~~~---------~a~~~L~~al~D~d~~Vr~~A~~aL~~ 896 (897)
T PRK13800 837 --DVAVPALVEALTD-----PHLDVRKAAVLALTRWP-GDP---------AARDALTTALTDSDADVRAYARRALAH 896 (897)
T ss_pred --cchHHHHHHHhcC-----CCHHHHHHHHHHHhccC-CCH---------HHHHHHHHHHhCCCHHHHHHHHHHHhh
Confidence 2356889999987 48999999999999972 222 246778899999999999999998863
|
|
| >PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.4e-10 Score=116.85 Aligned_cols=199 Identities=19% Similarity=0.247 Sum_probs=162.2
Q ss_pred HhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH
Q psy12605 280 IDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
.+++-++.|+.+|+. .++.+++.|+.++++.+.. +..+..+.+.|+++.+..++.++++.+|..|+++|.|++...+.
T Consensus 9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf-~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en 87 (254)
T PF04826_consen 9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAF-PFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN 87 (254)
T ss_pred cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccC-hhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence 467778999999974 6899999999999998654 67788899999999999999999999999999999999766544
Q ss_pred HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHH
Q psy12605 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438 (845)
Q Consensus 359 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 438 (845)
. ..+ + ..++.+++.+.+.. .+..+|..+..+|.+++..+ +....+. +.++.|+++|.+++..++.+++.+|
T Consensus 88 ~-~~I-k-~~i~~Vc~~~~s~~---lns~~Q~agLrlL~nLtv~~-~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L 158 (254)
T PF04826_consen 88 Q-EQI-K-MYIPQVCEETVSSP---LNSEVQLAGLRLLTNLTVTN-DYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVL 158 (254)
T ss_pred H-HHH-H-HHHHHHHHHHhcCC---CCCHHHHHHHHHHHccCCCc-chhhhHH--hhHHHHHHHHHcCChHHHHHHHHHH
Confidence 3 333 2 25777777665542 47899999999999997643 2333333 4799999999999999999999999
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC
Q psy12605 439 GNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489 (845)
Q Consensus 439 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~ 489 (845)
.|++.+... ...++.++++..++.++....+.++...+.+.+.|+..+..
T Consensus 159 ~nLS~np~~-~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~ 208 (254)
T PF04826_consen 159 VNLSENPDM-TRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIK 208 (254)
T ss_pred HHhccCHHH-HHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhC
Confidence 999987554 45556667999999999998888999999999999977654
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=108.38 Aligned_cols=119 Identities=36% Similarity=0.571 Sum_probs=109.4
Q ss_pred HHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 83 ALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 83 ~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.+++.|+++.|+++|. ++++.++..++++|.+++..+++....+++.|++|.++++|.+++++++..|+++|++++.+.
T Consensus 2 ~~~~~~~i~~l~~~l~-~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 2 AVIQAGGLPALVSLLS-SSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred hHHHcCChHHHHHHHH-cCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 4568899999999995 667899999999999999988889999999999999999999999999999999999999888
Q ss_pred hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 163 ~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
+..+..+.+.|+++.++++++.+ +..+++.++|+|.+++.
T Consensus 81 ~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~ 120 (120)
T cd00020 81 EDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS 120 (120)
T ss_pred HHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence 78888889999999999999877 66899999999999873
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.5e-10 Score=135.88 Aligned_cols=276 Identities=20% Similarity=0.185 Sum_probs=208.3
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.+.++.|++.| .++++.+|..|+.+|..+.. .+.++.|++.|+++++.+|..|+.+|+.+....+
T Consensus 620 ~~~~~~L~~~L-~D~d~~VR~~Av~~L~~~~~-----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--- 684 (897)
T PRK13800 620 APSVAELAPYL-ADPDPGVRRTAVAVLTETTP-----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--- 684 (897)
T ss_pred chhHHHHHHHh-cCCCHHHHHHHHHHHhhhcc-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC---
Confidence 44688999999 57889999999999998853 2478999999999999999999999998853222
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
..+.+...|.++ +..+|..|+..|..+.... ...|...+.++|+.
T Consensus 685 -------~~~~L~~~L~~~-d~~VR~~A~~aL~~~~~~~------------~~~l~~~L~D~d~~--------------- 729 (897)
T PRK13800 685 -------PAPALRDHLGSP-DPVVRAAALDVLRALRAGD------------AALFAAALGDPDHR--------------- 729 (897)
T ss_pred -------chHHHHHHhcCC-CHHHHHHHHHHHHhhccCC------------HHHHHHHhcCCCHH---------------
Confidence 124566667665 5589999998888764221 23566778888888
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~ 326 (845)
++..|+.+|..+.. .+.|..++.++++.|+..++.+|+.+..... ..
T Consensus 730 ----------VR~~Av~aL~~~~~--------------~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~---------~~ 776 (897)
T PRK13800 730 ----------VRIEAVRALVSVDD--------------VESVAGAATDENREVRIAVAKGLATLGAGGA---------PA 776 (897)
T ss_pred ----------HHHHHHHHHhcccC--------------cHHHHHHhcCCCHHHHHHHHHHHHHhccccc---------hh
Confidence 88889988876521 2346778899999999999999999854311 23
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
++.|..+++++++.+|..|+.+|.++.... ..++.++..+.+ +++.+|..|+++|..+...
T Consensus 777 ~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~----------~~~~~l~~aL~d-----~d~~VR~~Aa~aL~~l~~~---- 837 (897)
T PRK13800 777 GDAVRALTGDPDPLVRAAALAALAELGCPP----------DDVAAATAALRA-----SAWQVRQGAARALAGAAAD---- 837 (897)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc----------hhHHHHHHHhcC-----CChHHHHHHHHHHHhcccc----
Confidence 677889999999999999999999983221 123567778877 4789999999999987532
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHH
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 482 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~ 482 (845)
..++.|+.+|.+++..||..|+++|+.+.. .+.. .+.|...+++. +..+++.+..+|.
T Consensus 838 -------~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~-~~~a---------~~~L~~al~D~-d~~Vr~~A~~aL~ 895 (897)
T PRK13800 838 -------VAVPALVEALTDPHLDVRKAAVLALTRWPG-DPAA---------RDALTTALTDS-DADVRAYARRALA 895 (897)
T ss_pred -------chHHHHHHHhcCCCHHHHHHHHHHHhccCC-CHHH---------HHHHHHHHhCC-CHHHHHHHHHHHh
Confidence 357999999999999999999999999732 2222 34555666643 4567777776654
|
|
| >cd00020 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=99.22 E-value=2.3e-10 Score=103.36 Aligned_cols=117 Identities=34% Similarity=0.570 Sum_probs=110.1
Q ss_pred HhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 321 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
+.+.|+++.+++++.+.+..++..++++|.+++.+.++....+++.++++.+++++.+ .++.++..++|+|++++
T Consensus 3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~-----~~~~v~~~a~~~L~~l~ 77 (120)
T cd00020 3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS-----EDEEVVKAALWALRNLA 77 (120)
T ss_pred HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC-----CCHHHHHHHHHHHHHHc
Confidence 5677999999999999999999999999999999988888999999999999999987 38999999999999999
Q ss_pred cCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 401 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 401 ~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
.+.+.....+.+.|+++.+++++.+.+..++..++++|++++
T Consensus 78 ~~~~~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 78 AGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred cCcHHHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 998888888999999999999999999999999999999986
|
An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. |
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.9e-09 Score=112.36 Aligned_cols=327 Identities=13% Similarity=0.138 Sum_probs=228.9
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHc-----CChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAA-----GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~-----g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.++..++.+|+...++++....+..+..+...++.....+.+. ....+++.+|..++.-+...|+..|..+...+
T Consensus 53 ~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 53 QYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHhcC
Confidence 4688889999777788888899999999988877777777764 57788899999999999999999999998665
Q ss_pred hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhh
Q psy12605 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIE 242 (845)
Q Consensus 163 ~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~ 242 (845)
+.........-.++.+...+....+...+..++.+|..+.+.++.. ......++++.|+.+++.....+|
T Consensus 133 ~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R-~~f~~~~~v~~L~~~L~~~~~~~Q--------- 202 (429)
T cd00256 133 LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYR-FAFVLADGVPTLVKLLSNATLGFQ--------- 202 (429)
T ss_pred ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHH-HHHHHccCHHHHHHHHhhccccHH---------
Confidence 4321111100123345555555445678888999999999887544 334455688999998875332211
Q ss_pred hChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc-CCchhhHHHHHHHHHHHhcCC------h
Q psy12605 243 KNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS-HKEVKVQTASLRAVGNIVTGT------D 315 (845)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~------~ 315 (845)
++..++.++.-++.... ....+...++++.++.+++ +..+++.+-++.+|.|+...+ .
T Consensus 203 --------------l~Y~~ll~lWlLSF~~~-~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~ 267 (429)
T cd00256 203 --------------LQYQSIFCIWLLTFNPH-AAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKK 267 (429)
T ss_pred --------------HHHHHHHHHHHHhccHH-HHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhh
Confidence 66666666666665433 4455667799999999995 467889999999999998743 2
Q ss_pred hhHHHHhcCCccchhhHhhcC--CchhhHHHHHH-------HHHHhhc------------------C-C----hHHHHHH
Q psy12605 316 EQTQVILNCDALSHFPALLTH--PKEKICKEAVW-------FLSNITA------------------G-N----QAQVQAV 363 (845)
Q Consensus 316 ~~~~~i~~~~~l~~L~~lL~~--~~~~~~~~a~~-------~L~nl~~------------------~-~----~~~~~~l 363 (845)
.....++++|+.+.+-.+... .|+++....-. .+..++. | + .++...+
T Consensus 268 ~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf 347 (429)
T cd00256 268 TAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRL 347 (429)
T ss_pred hHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHH
Confidence 234566776665544444432 35554432211 1111110 1 0 1111222
Q ss_pred Hhc--CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 364 IDA--GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 364 ~~~--~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
-+. .++..|+++|... .++.+..-||.=++.++.+.|..+..+-+.|+=..+.+++.+++++|+..|+.|+..+
T Consensus 348 ~~~~~~llk~L~~iL~~s----~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQkl 423 (429)
T cd00256 348 NEKNYELLKILIHLLETS----VDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPNVRYEALLAVQKL 423 (429)
T ss_pred HhcchHHHHHHHHHHhcC----CCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 222 2578899999654 4778888899999999999999999898999999999999999999999999999877
Q ss_pred hc
Q psy12605 442 IG 443 (845)
Q Consensus 442 ~~ 443 (845)
..
T Consensus 424 m~ 425 (429)
T cd00256 424 MV 425 (429)
T ss_pred HH
Confidence 53
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >KOG0946|consensus | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.2e-07 Score=100.04 Aligned_cols=340 Identities=15% Similarity=0.200 Sum_probs=253.6
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCC
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~ 120 (845)
..+.|+.++-+.-+++-++.|..|+..|+.+.. ..+.-+.+.++++|++.|+++ .++++-..++.++..+..++
T Consensus 20 ~aETI~kLcDRvessTL~eDRR~A~rgLKa~sr-----kYR~~Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d 94 (970)
T KOG0946|consen 20 AAETIEKLCDRVESSTLLEDRRDAVRGLKAFSR-----KYREEVGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD 94 (970)
T ss_pred HHhHHHHHHHHHhhccchhhHHHHHHHHHHHHH-----HHHHHHHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC
Confidence 346788888444466788999999999988743 235555666789999999655 57889999999999988754
Q ss_pred h------h----------hHHHHH-HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC-ChhhHHHHHhc-CChhhHHhh
Q psy12605 121 S------A----------QTQEVV-AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD-GPQLRDYVINM-GVVPPLLSF 181 (845)
Q Consensus 121 ~------~----------~~~~i~-~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~-~~~~r~~i~~~-g~i~~Lv~l 181 (845)
. + ....++ ..+.|..|+..+...+-.||..++..|.++-.. .++.++.+... -+|..++.+
T Consensus 95 d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl 174 (970)
T KOG0946|consen 95 DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL 174 (970)
T ss_pred cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence 2 1 122233 368899999999999999999999999988654 45678877754 579999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC---CchhhHHHHHHHhhhChhhHHhhhhhHHHH
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH---DTSVSIYLWLSIIEKNPQISKILVSKMKIL 258 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (845)
|... .+-+|-.++..|..+.+++...++....++++..|+.++..+ |..+ +.
T Consensus 175 L~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgI------------------------Vv 229 (970)
T KOG0946|consen 175 LRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGI------------------------VV 229 (970)
T ss_pred Hhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcc------------------------hH
Confidence 9876 446888999999999999988888899999999999999754 2322 88
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC---Cc----------hhhHHHHHHHHHHHhcCC-h-----hhHH
Q psy12605 259 VDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH---KE----------VKVQTASLRAVGNIVTGT-D-----EQTQ 319 (845)
Q Consensus 259 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~---~~----------~~v~~~al~~L~nl~~~~-~-----~~~~ 319 (845)
.+|+..|.++-..+..+...+.+.+.+|+|.++|.. .+ ..-...++.+++.++... . ..+.
T Consensus 230 eDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk 309 (970)
T KOG0946|consen 230 EDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQK 309 (970)
T ss_pred HHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 899999999998888888999999999999988832 12 112346777888777532 1 2345
Q ss_pred HHhcCCccchhhHhhcCC--chhhHHHHHHHHHHhhcCChHHHHHHHhcCC------hHHHHHHhhhcccccCChhHHHH
Q psy12605 320 VILNCDALSHFPALLTHP--KEKICKEAVWFLSNITAGNQAQVQAVIDAGL------LPKIIANLQKVGRIVLRPNLQFE 391 (845)
Q Consensus 320 ~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~------i~~Lv~lL~~~~~~~~~~~v~~~ 391 (845)
.+..++++..|..++-++ ..+++..+..+++++.+++......+.+..+ .|.++-++.........+..|..
T Consensus 310 ~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm~ne~q~~~lRcA 389 (970)
T KOG0946|consen 310 ALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSMFNEKQPFSLRCA 389 (970)
T ss_pred HHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHHHhccCCchHHHH
Confidence 777888999999998776 4678899999999999998887777754321 22233222221111156788999
Q ss_pred HHHHHHHHhcCChHhHHHHH
Q psy12605 392 AAWALTNIASGTSAQTQEVV 411 (845)
Q Consensus 392 a~~~L~~l~~~~~~~~~~l~ 411 (845)
..+++......+.+....++
T Consensus 390 v~ycf~s~l~dN~~gq~~~l 409 (970)
T KOG0946|consen 390 VLYCFRSYLYDNDDGQRKFL 409 (970)
T ss_pred HHHHHHHHHhcchhhHHHHH
Confidence 99999998877666555443
|
|
| >KOG0168|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=6.4e-09 Score=114.69 Aligned_cols=251 Identities=20% Similarity=0.265 Sum_probs=188.3
Q ss_pred CchhhHHHHHHHHHH-hhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCC
Q psy12605 337 PKEKICKEAVWFLSN-ITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 415 (845)
Q Consensus 337 ~~~~~~~~a~~~L~n-l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~ 415 (845)
.|+..+.+|+.-|+. |..++.+....+--..++|.|+.+|+.. .+.++...||+||.+++.--|.....+++.++
T Consensus 180 ~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E----~n~DIMl~AcRaltyl~evlP~S~a~vV~~~a 255 (1051)
T KOG0168|consen 180 SDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHE----HNFDIMLLACRALTYLCEVLPRSSAIVVDEHA 255 (1051)
T ss_pred CChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHhhccchhheeecccc
Confidence 367777777666665 3445555544444456899999999987 58999999999999999999999999999999
Q ss_pred hHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 416 VPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 494 (845)
Q Consensus 416 i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~ 494 (845)
||.|+.-|. -+..+|-++++.+|..|++..+. +++++|++-..+.++.- .+...+|.+..+..|+|..- +...+
T Consensus 256 IPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~---AiL~AG~l~a~LsylDF-FSi~aQR~AlaiaaN~Cksi-~sd~f 330 (1051)
T KOG0168|consen 256 IPVLLEKLLTIEYIDVAEQSLQALEKISRRHPK---AILQAGALSAVLSYLDF-FSIHAQRVALAIAANCCKSI-RSDEF 330 (1051)
T ss_pred hHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccH---HHHhcccHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcC-CCccc
Confidence 999886554 56789999999999999987764 68899999999988853 34578999999999999877 45678
Q ss_pred hHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCC
Q psy12605 495 STIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGT 572 (845)
Q Consensus 495 ~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~ 572 (845)
..+.+.+|.|..+++..|...+.+ |. +.++.++... .
T Consensus 331 ~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h-----------------------------------------~ 369 (1051)
T KOG0168|consen 331 HFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQH-----------------------------------------G 369 (1051)
T ss_pred hHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhccc-----------------------------------------C
Confidence 899999999999999999887665 43 4444432111 1
Q ss_pred hhhHHHHHhCCcccchHHhhcCC----ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhh
Q psy12605 573 DEQTQVILNCDALSHFPALLTHP----KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKR 637 (845)
Q Consensus 573 ~~~~~~l~~~~~l~~L~~ll~~~----~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 637 (845)
++..+++...|++.-...++.-. +..+......+++-++.+.+-..+.+...++...+-.+++..
T Consensus 370 ~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~ 438 (1051)
T KOG0168|consen 370 PDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGY 438 (1051)
T ss_pred hHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhcc
Confidence 22224444444444444444322 235666778888888888888888888888888888887543
|
|
| >KOG0946|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.8e-07 Score=100.41 Aligned_cols=359 Identities=15% Similarity=0.198 Sum_probs=242.4
Q ss_pred ChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 132 AVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 132 ~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
.|+.|+.-+.++ -.+=|..|+++|-.++ ..+|..+...| ++++++.|..+. +.++...+..++.++..+.+...
T Consensus 23 TI~kLcDRvessTL~eDRR~A~rgLKa~s---rkYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~~~ 98 (970)
T KOG0946|consen 23 TIEKLCDRVESSTLLEDRRDAVRGLKAFS---RKYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDSPE 98 (970)
T ss_pred HHHHHHHHHhhccchhhHHHHHHHHHHHH---HHHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcchh
Confidence 455555555443 3456899999999987 46888887765 788888886553 56778888888888877664211
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
.+ .++ .. .-.-..|.-- .++-..+.|..++
T Consensus 99 v~--------------dds-~q-------------------------sdd~g~~iae----------~fik~qd~I~lll 128 (970)
T KOG0946|consen 99 VM--------------DDS-TQ-------------------------SDDLGLWIAE----------QFIKNQDNITLLL 128 (970)
T ss_pred hc--------------ccc-hh-------------------------hhHHHHHHHH----------HHHcCchhHHHHH
Confidence 11 000 01 1122333211 2334558889999
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCCh-hhHHHHh-cCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcC
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTD-EQTQVIL-NCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG 367 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~ 367 (845)
.++...+-.||.+++..|.++.+..+ +.++.++ ..-++..++.+|.+..+.+|.++...|..++.+++...+.+.=.+
T Consensus 129 ~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFEN 208 (970)
T KOG0946|consen 129 QSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFEN 208 (970)
T ss_pred HHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHH
Confidence 99999999999999999999976543 4455444 346899999999999999999999999999999888777777789
Q ss_pred ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC---CCHHH----------HHHH
Q psy12605 368 LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS---PHSNV----------CEQA 434 (845)
Q Consensus 368 ~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~---~~~~v----------~~~a 434 (845)
+...|+.++...+.. +..-|...+...+.|+...+..+...+.+.+.+|.|.++|.- .+.++ ...+
T Consensus 209 aFerLfsIIeeEGg~-dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~ 287 (970)
T KOG0946|consen 209 AFERLFSIIEEEGGL-DGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEA 287 (970)
T ss_pred HHHHHHHHHHhcCCC-CCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHH
Confidence 999999999887533 344677889999999999999999999999999999988863 23211 1234
Q ss_pred HHHHHHhhcC------ChHHHHHHHhCCChHHHHhccCCC-CChhHHHHHHHHHHHhhcCCCCCCC---------hhHHH
Q psy12605 435 VWALGNIIGD------GPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPS---------MSTII 498 (845)
Q Consensus 435 ~~~L~nl~~~------~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~~~~~~l~nL~~~~~~~~~---------~~~~~ 498 (845)
+.++..+..- ...+.+.+..++++..|..++-+. -+.+++....-++++..|+....+. .+--+
T Consensus 288 Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr 367 (970)
T KOG0946|consen 288 LQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPR 367 (970)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCc
Confidence 4444444431 234556788999999999887654 6667777777788888876532111 11001
Q ss_pred hHHHHH-HHhhcCC-ChhHHH---HHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccC
Q psy12605 499 ELLPAL-NILIHHH-DTSVSI---YLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHN 551 (845)
Q Consensus 499 ~~l~~l-~~ll~~~-d~~v~~---~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~ 551 (845)
+.+-.+ ..+..+. ....+. +|+.+|+.++.+.+.. ++.+++..-.+.
T Consensus 368 ~sivvllmsm~ne~q~~~lRcAv~ycf~s~l~dN~~gq~~------~l~tllp~~~ns 419 (970)
T KOG0946|consen 368 PSIVVLLMSMFNEKQPFSLRCAVLYCFRSYLYDNDDGQRK------FLKTLLPSSTNS 419 (970)
T ss_pred cchhHHHHHHHhccCCchHHHHHHHHHHHHHhcchhhHHH------HHHHHhhhhccc
Confidence 122222 2333332 223333 3557888887766554 344555544443
|
|
| >cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments | Back alignment and domain information |
|---|
Probab=99.06 E-value=2.3e-08 Score=107.30 Aligned_cols=300 Identities=14% Similarity=0.133 Sum_probs=200.7
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+..++ +.|+.+|.-.+..|...+..+.+.+... .......-+++.|...|+..++.+.+..|+.+|..+... ++.+
T Consensus 102 ~~~~fl-~lL~~~d~~i~~~a~~iLt~l~~~~~~~-~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~-~~~R 178 (429)
T cd00256 102 TWEPFF-NLLNRQDQFIVHMSFSILAKLACFGLAK-MEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRV-DEYR 178 (429)
T ss_pred chHHHH-HHHcCCchhHHHHHHHHHHHHHhcCccc-cchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCC-chHH
Confidence 355667 7888888889999999999888754321 111111124567777775445567788889999999865 6788
Q ss_pred HHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 125 QEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
..+.+.++++.|+.+|+.. +..++.+++-|++-++.+. +..+.....+.|+.++++++....+.+.|.++.+|.|+.
T Consensus 179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~-~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll 257 (429)
T cd00256 179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNP-HAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLI 257 (429)
T ss_pred HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccH-HHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHh
Confidence 8899999999999999763 4588899999999999664 466666678999999999998888899999999999999
Q ss_pred cCCCCCC---C--hhHHh-hHHHHHHhhccc--CCchhh--HHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH-Hh---
Q psy12605 203 RNKDPPP---S--MSTII-ELLPALNILIHH--HDTSVS--IYLWLSIIEKNPQISKILVSKMKILVDTVWALS-YL--- 268 (845)
Q Consensus 203 ~~~~~~~---~--~~~~~-~~l~~L~~ll~~--~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~-~l--- 268 (845)
....... . ..... +.++.+-.+... .|+++. +..+......+-+ .... .-++...... .|
T Consensus 258 ~~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k--~lts----fD~Y~~El~sg~L~WS 331 (429)
T cd00256 258 SKRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQ--DLSS----FDEYKSELRSGRLHWS 331 (429)
T ss_pred hcccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHH--HcCC----HHHHHHHHhcCCccCC
Confidence 8542111 1 11222 444444444433 355421 0111000000000 0000 0000000000 00
Q ss_pred hcCC-----hhhHHHHHhc--CchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchh
Q psy12605 269 TDGG-----NDQIQMVIDS--GVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340 (845)
Q Consensus 269 ~~~~-----~~~~~~~~~~--g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~ 340 (845)
.-|. .++...+-+. .++..|+.+| .+.++.+..-||.=||.++...+..+..+.+.|+-..++.++.++|++
T Consensus 332 p~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h~d~~ 411 (429)
T cd00256 332 PVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNHEDPN 411 (429)
T ss_pred CCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcCCCHH
Confidence 0011 1233444333 3567889999 456788888999999999998888888888889999999999999999
Q ss_pred hHHHHHHHHHHhhc
Q psy12605 341 ICKEAVWFLSNITA 354 (845)
Q Consensus 341 ~~~~a~~~L~nl~~ 354 (845)
+|.+|+.++..+..
T Consensus 412 Vr~eAL~avQklm~ 425 (429)
T cd00256 412 VRYEALLAVQKLMV 425 (429)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999988743
|
The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example. |
| >COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.5e-07 Score=96.99 Aligned_cols=482 Identities=15% Similarity=0.116 Sum_probs=282.4
Q ss_pred HhhhcHHHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCCccHHHHHh---cC-CHHHHHHhhccCCChhHHHHHHHHHH
Q psy12605 41 MAQVNLDMLVVEAARK--DNPELQLLAVQSARKLLSSDKNPPIEALIH---SG-ILPVLVECLERSDRPNLQFEAAWALT 114 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~--~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~---~g-~i~~Lv~lL~~~~~~~i~~~a~~~L~ 114 (845)
+.+.-+..++ ..-.+ ++..+++.|+.+|..-+-.-+ ..+-. .+ ++...++.- .+++.+++..|..||.
T Consensus 173 ~sN~il~aiv-~ga~k~et~~avRLaaL~aL~dsl~fv~----~nf~~E~erNy~mqvvceat-q~~d~e~q~aafgCl~ 246 (858)
T COG5215 173 MSNVILFAIV-MGALKNETTSAVRLAALKALMDSLMFVQ----GNFCYEEERNYFMQVVCEAT-QGNDEELQHAAFGCLN 246 (858)
T ss_pred HhhHHHHHHH-HhhcccCchHHHHHHHHHHHHHHHHHHH----Hhhcchhhhchhheeeehhc-cCCcHHHHHHHHHHHH
Confidence 3444444444 33333 355678888888877433110 11111 11 233334444 4577899999999999
Q ss_pred HHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh----------------cCChhhH
Q psy12605 115 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN----------------MGVVPPL 178 (845)
Q Consensus 115 ~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~----------------~g~i~~L 178 (845)
++-.-..+..+...+.-......+.++++++++..+|+.....+|.+.-+..-.+.. .+++|.|
T Consensus 247 kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~l 326 (858)
T COG5215 247 KIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPEL 326 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHH
Confidence 998877777788888778888889999999999999999998888653322211111 1367777
Q ss_pred HhhhcCCC------CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhh
Q psy12605 179 LSFIKPDI------PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 252 (845)
Q Consensus 179 v~ll~~~~------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (845)
+++|.+.. +=...-.|..||--++..... ....+.+..+-+-+.+++..
T Consensus 327 L~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd----~i~~pVl~FvEqni~~~~w~--------------------- 381 (858)
T COG5215 327 LSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD----KIMRPVLGFVEQNIRSESWA--------------------- 381 (858)
T ss_pred HHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh----HhHHHHHHHHHHhccCchhh---------------------
Confidence 77775411 112222333333333222110 12233444444445555554
Q ss_pred hhHHHHHHHHHHHHHhhcCChhh-HHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhh
Q psy12605 253 SKMKILVDTVWALSYLTDGGNDQ-IQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFP 331 (845)
Q Consensus 253 ~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~ 331 (845)
-++.+..++..+..+..+. ...+ -...+|.+...+.++.-.++..+.+|++.++.+ ....+-.+|.++..+
T Consensus 382 ----nreaavmAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~---va~~i~p~~Hl~~~v 453 (858)
T COG5215 382 ----NREAAVMAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADH---VAMIISPCGHLVLEV 453 (858)
T ss_pred ----hHHHHHHHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHH---HHHhcCccccccHHH
Confidence 6677777887777665443 3333 446777888888877788999999999999743 444555566666555
Q ss_pred HhhcC---CchhhHHHHHHHHHHhhcCChHHHHHH--HhcCChHHHHHHhhhccccc-CChhHHHHHHHHHHHHhcCChH
Q psy12605 332 ALLTH---PKEKICKEAVWFLSNITAGNQAQVQAV--IDAGLLPKIIANLQKVGRIV-LRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 332 ~lL~~---~~~~~~~~a~~~L~nl~~~~~~~~~~l--~~~~~i~~Lv~lL~~~~~~~-~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
....- ..+.+..+++|..-|++.+-++..... .-....+.++..|-...... -+...|..+-.+|+.+...+++
T Consensus 454 sa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d 533 (858)
T COG5215 454 SASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPD 533 (858)
T ss_pred HHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcch
Confidence 54422 346677889999999987765544211 11223333333332211000 2456666666677776655444
Q ss_pred hHHHHHH----------cCChHHHHHhhCCCC----HHHHHHHHHHHHHhhcCC----hHHHHHHHhCCChHHHHhccCC
Q psy12605 406 QTQEVVA----------AGAVPLFLRLLMSPH----SNVCEQAVWALGNIIGDG----PQLRDYVINMGVVPPLLSFIKP 467 (845)
Q Consensus 406 ~~~~l~~----------~g~i~~Lv~lL~~~~----~~v~~~a~~~L~nl~~~~----~~~~~~l~~~g~l~~L~~ll~~ 467 (845)
....+.. ...+..+-+.+..++ ++++.+-+..|..+.... +...+. .+..+++++++
T Consensus 534 ~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~-----lm~Lf~r~les 608 (858)
T COG5215 534 AVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQ-----LMELFIRILES 608 (858)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHH-----HHHHHHHHHhc
Confidence 3222211 023333444444333 456667777777666422 222232 35677888887
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCCC-hhHHHhHHHHHHHhhcCCChhHHHHHH--HHhhhcCchhhHHHHhhhhhhHHH
Q psy12605 468 DIPISFLRNVTWVIVNLCRNKDPPPS-MSTIIELLPALNILIHHHDTSVSIYLW--LSIIEKNPQISKILVSKMKVCSRY 544 (845)
Q Consensus 468 ~~~~~~~~~~~~~l~nL~~~~~~~~~-~~~~~~~l~~l~~ll~~~d~~v~~~~~--l~~l~~~~~~~~~~~~~~~~~~~L 544 (845)
..+......+..++++|+..-. .. ......++|++.+-++..|..+...+. +.-|+..- ..+...........|
T Consensus 609 ~~~t~~~~dV~~aIsal~~sl~--e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl-~~df~~y~d~~ms~L 685 (858)
T COG5215 609 TKPTTAFGDVYTAISALSTSLE--ERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL-GTDFNIYADVLMSSL 685 (858)
T ss_pred cCCchhhhHHHHHHHHHHHHHH--HHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHH
Confidence 7665666677778888876331 11 134466888888888877877766543 33333211 112223445677889
Q ss_pred HhhhccCCCCccccccccccccccc
Q psy12605 545 LYYLSHNSGPMSCQKKQHSIYMCVS 569 (845)
Q Consensus 545 ~~ll~~~~~~~~~~~~~l~~l~nl~ 569 (845)
+++|.++......+.+.+++++.|+
T Consensus 686 vQ~lss~~~~R~lKPaiLSvFgDIA 710 (858)
T COG5215 686 VQCLSSEATHRDLKPAILSVFGDIA 710 (858)
T ss_pred HHHhcChhhccccchHHHHHHHHHH
Confidence 9999999888888877888777654
|
|
| >KOG1824|consensus | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.9e-06 Score=96.63 Aligned_cols=488 Identities=14% Similarity=0.172 Sum_probs=265.1
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChH
Q psy12605 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 134 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~ 134 (845)
++.|.++++.|+.++..++..-.+..... -...++.+++-| .+.-.|..|+.+|+.++...-.....-+-..+++
T Consensus 580 ~d~DqeVkeraIscmgq~i~~fgD~l~~e--L~~~L~il~eRl---~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~ 654 (1233)
T KOG1824|consen 580 TDSDQEVKERAISCMGQIIANFGDFLGNE--LPRTLPILLERL---GNEITRLTAVKALTLIAMSPLDIDLSPVLTEILP 654 (1233)
T ss_pred ccccHHHHHHHHHHHHHHHHHHhhhhhhh--hHHHHHHHHHHH---hchhHHHHHHHHHHHHHhccceeehhhhHHHHHH
Confidence 45678899999999998877543211111 113455666666 3456789999999999865333332333356889
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhH
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMST 213 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 213 (845)
.+...+......++...+.++-.+...... ......+. ++.-+..++... +..+-..|+.+|..+.... +......
T Consensus 655 ~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~-vL~el~~Lises-dlhvt~~a~~~L~tl~~~~-ps~l~~~ 731 (1233)
T KOG1824|consen 655 ELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELLEA-VLVELPPLISES-DLHVTQLAVAFLTTLAIIQ-PSSLLKI 731 (1233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHH-HHHHhhhhhhHH-HHHHHHHHHHHHHHHHhcc-cHHHHHH
Confidence 999999888788888877777766533211 11111111 122233333333 5567778888888888876 3333455
Q ss_pred HhhHHHHHHhhcccCCchh-hHHHH----HHH-hhhChhhHHhhhhh-----------HHHHHHH----HHHHHHhhcCC
Q psy12605 214 IIELLPALNILIHHHDTSV-SIYLW----LSI-IEKNPQISKILVSK-----------MKILVDT----VWALSYLTDGG 272 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~-~~~~~----~~l-~~~~~~~~~~~~~~-----------~~~~~~a----~~~L~~l~~~~ 272 (845)
....++.+..+++++--.. -..++ .++ ....|..-...+.. -.+-..| +.|.+.++...
T Consensus 732 ~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~ 811 (1233)
T KOG1824|consen 732 SNPILDEIIRLLRSPLLQGGALSALLLFFQALVITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCAC 811 (1233)
T ss_pred hhhhHHHHHHHhhCccccchHHHHHHHHHHHHHhcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhc
Confidence 6678888888887654321 11111 111 11222111000000 0011112 22222222211
Q ss_pred hhhHHHHHhcCchhhHHhhcc--CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHH
Q psy12605 273 NDQIQMVIDSGVVPSLIPLLS--HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLS 350 (845)
Q Consensus 273 ~~~~~~~~~~g~i~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~ 350 (845)
.+. .......++.-+. ..+..++.-|+-.+|.+-.+.+... ..+.-..++..+.+++++++.+|..+|+
T Consensus 812 ~~~-----s~s~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~~~~s~----~~e~~~~iieaf~sp~edvksAAs~ALG 882 (1233)
T KOG1824|consen 812 PQK-----SKSLATKLIQDLQSPKSSDSIKVFALLSLGELGRRKDLSP----QNELKDTIIEAFNSPSEDVKSAASYALG 882 (1233)
T ss_pred ccc-----chhHHHHHHHHHhCCCCchhHHHHHHhhhhhhccCCCCCc----chhhHHHHHHHcCCChHHHHHHHHHHhh
Confidence 111 1122233333333 3356688888888888865533221 1234457888999999999999999999
Q ss_pred HhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChHHHHHhhCCCCHH
Q psy12605 351 NITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSN 429 (845)
Q Consensus 351 nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~ 429 (845)
+++.++-+. .+|.+++.+.+. +.=|+--...|..+.. .+.+..+ -.-...+..|.+-.....+.
T Consensus 883 sl~vgnl~~--------yLpfil~qi~sq------pk~QyLLLhSlkevi~~~svd~~~-~~v~~IW~lL~k~cE~~eeg 947 (1233)
T KOG1824|consen 883 SLAVGNLPK--------YLPFILEQIESQ------PKRQYLLLHSLKEVIVSASVDGLK-PYVEKIWALLFKHCECAEEG 947 (1233)
T ss_pred hhhcCchHh--------HHHHHHHHHhcc------hHhHHHHHHHHHHHHHHhccchhh-hhHHHHHHHHHHhcccchhh
Confidence 998876543 466666666553 3334444444443322 1111111 01112334455555566777
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhc
Q psy12605 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 509 (845)
Q Consensus 430 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~ 509 (845)
.|.-.+.|||.++...|+. .++.|-..+.+..+ ..+..++.++. +.-...|++--..+.+.+..+..+++
T Consensus 948 tR~vvAECLGkL~l~epes--------LlpkL~~~~~S~a~-~~rs~vvsavK-fsisd~p~~id~~lk~~ig~fl~~~~ 1017 (1233)
T KOG1824|consen 948 TRNVVAECLGKLVLIEPES--------LLPKLKLLLRSEAS-NTRSSVVSAVK-FSISDQPQPIDPLLKQQIGDFLKLLR 1017 (1233)
T ss_pred hHHHHHHHhhhHHhCChHH--------HHHHHHHHhcCCCc-chhhhhhheee-eeecCCCCccCHHHHHHHHHHHHHHh
Confidence 8899999999999876642 34455444444332 22222222222 22222344555677889999999999
Q ss_pred CCChhHHHHHH--HH-hhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCccc
Q psy12605 510 HHDTSVSIYLW--LS-IIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALS 586 (845)
Q Consensus 510 ~~d~~v~~~~~--l~-~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~ 586 (845)
+.|.+|+..++ ++ .....|.-.+ ++.+.|+..+-+.+.-- .+ .-.-++.|-+.
T Consensus 1018 dpDl~VrrvaLvv~nSaahNKpslIr------DllpeLLp~Ly~eTkvr-----------------ke-lIreVeMGPFK 1073 (1233)
T KOG1824|consen 1018 DPDLEVRRVALVVLNSAAHNKPSLIR------DLLPELLPLLYSETKVR-----------------KE-LIREVEMGPFK 1073 (1233)
T ss_pred CCchhHHHHHHHHHHHHHccCHhHHH------HHHHHHHHHHHHhhhhh-----------------Hh-hhhhhcccCcc
Confidence 99999987755 32 3333333222 45666666654432210 00 01123445443
Q ss_pred chHHhhcCCChhHHHHHHHHHhhhcc
Q psy12605 587 HFPALLTHPKEKICKEAVWFLSNITA 612 (845)
Q Consensus 587 ~L~~ll~~~~~~v~~~a~~~Lsnl~~ 612 (845)
+.+ +..-++|+.|+.++..+..
T Consensus 1074 H~V----DdgLd~RKaaFEcmytLLd 1095 (1233)
T KOG1824|consen 1074 HTV----DDGLDLRKAAFECMYTLLD 1095 (1233)
T ss_pred ccc----cchHHHHHHHHHHHHHHHH
Confidence 322 1234788888888877653
|
|
| >KOG1824|consensus | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.5e-06 Score=97.45 Aligned_cols=296 Identities=18% Similarity=0.216 Sum_probs=164.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHh-------------------------------------cC
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH-------------------------------------SG 88 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~-------------------------------------~g 88 (845)
+..++ +.|.+.++++|..|++++.-+.+.-+......+++ ..
T Consensus 49 v~~lL-klL~D~ngEVQnlAVKClg~lvsKvke~~le~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~t 127 (1233)
T KOG1824|consen 49 VKMLL-KLLEDKNGEVQNLAVKCLGPLVSKVKEDQLETIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAAT 127 (1233)
T ss_pred HHHHH-HHHhccCcHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccH
Confidence 44556 78899999999999999985544321111111111 11
Q ss_pred ----CHHHHHHhhcc-CCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh
Q psy12605 89 ----ILPVLVECLER-SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 163 (845)
Q Consensus 89 ----~i~~Lv~lL~~-~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~ 163 (845)
+.|.|++.+.. .+...++..++..+..+-+.-...... ++.+....++..|.++...++..|+.+|+.++...+
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~ 206 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN 206 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC
Confidence 23333333321 123347777777777665432222222 456677788888899999999999999999986543
Q ss_pred hhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhc---ccCCchhhHHHHHH-
Q psy12605 164 QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI---HHHDTSVSIYLWLS- 239 (845)
Q Consensus 164 ~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll---~~~~~~~~~~~~~~- 239 (845)
+.... +.+..+++-|.+.......+.-+.+|..+|+.... +.-......+|.+.+.. +..+.+.+.+++.+
T Consensus 207 --~~ly~--~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~ag~-r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQal 281 (1233)
T KOG1824|consen 207 --RDLYV--ELIEHLLKGLSNRTQMSATRTYIQCLAAICRQAGH-RFGSHLDKIVPLVADYCNKIEEDDDELREYCLQAL 281 (1233)
T ss_pred --HHHHH--HHHHHHHhccCCCCchHHHHHHHHHHHHHHHHhcc-hhhcccchhhHHHHHHhcccccCcHHHHHHHHHHH
Confidence 22222 35777777777777777888889999999987632 22234567788888887 55666655555532
Q ss_pred --HhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC-------hhhHHHHHhcC-chhhHHhhccC--CchhhHHHHHHHH
Q psy12605 240 --IIEKNPQISKILVSKMKILVDTVWALSYLTDGG-------NDQIQMVIDSG-VVPSLIPLLSH--KEVKVQTASLRAV 307 (845)
Q Consensus 240 --l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~g-~i~~Lv~lL~~--~~~~v~~~al~~L 307 (845)
....+|.--. .--.++..-+ +.|++-.+ .+-...+.+.+ --+.-=++=++ -++.||.+|++|+
T Consensus 282 e~fl~rcp~ei~--p~~pei~~l~---l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl 356 (1233)
T KOG1824|consen 282 ESFLRRCPKEIL--PHVPEIINLC---LSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCL 356 (1233)
T ss_pred HHHHHhChhhhc--ccchHHHHHH---HHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHH
Confidence 2223331100 0001122222 33333211 11111111110 00000001011 1356999999999
Q ss_pred HHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 308 GNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 308 ~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
..+.....+.-..+.+ ..-|.++.-++...+.++.....+...+..
T Consensus 357 ~a~IsSR~E~L~~~~q-~l~p~lI~RfkEREEnVk~dvf~~yi~ll~ 402 (1233)
T KOG1824|consen 357 EAVISSRLEMLPDFYQ-TLGPALISRFKEREENVKADVFHAYIALLK 402 (1233)
T ss_pred HHHHhccHHHHHHHHH-HhCHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 9987665443333332 244777777777777777666655555433
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-08 Score=100.96 Aligned_cols=190 Identities=19% Similarity=0.287 Sum_probs=158.8
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhH
Q psy12605 99 RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178 (845)
Q Consensus 99 ~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~L 178 (845)
++.+++-+..|..-|..++. +-++...+...|++++++..+++++..+|+.|+|+++..+..+|..++.+++.|+++.|
T Consensus 93 ~s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 34567888999999999985 58899999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHH
Q psy12605 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKIL 258 (845)
Q Consensus 179 v~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 258 (845)
+..+..+.+...+..|.++++.+.++..+........+....|...+.+.+.+++ .+
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~-----------------------lk 228 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVK-----------------------LK 228 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchH-----------------------HH
Confidence 9999988888999999999999999998888777777778899999988544421 66
Q ss_pred HHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhc
Q psy12605 259 VDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312 (845)
Q Consensus 259 ~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~ 312 (845)
..++..+.++..........+...+....+..+....+.++.+.++.++..+..
T Consensus 229 rK~~~Ll~~Ll~~~~s~~d~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 229 RKALFLLSLLLQEDKSDEDIASSLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 777888888876554444444444666667777777788888888888877654
|
|
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.3e-05 Score=87.70 Aligned_cols=555 Identities=13% Similarity=0.114 Sum_probs=293.0
Q ss_pred CCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHH
Q psy12605 100 SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179 (845)
Q Consensus 100 ~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv 179 (845)
+.+..+|..++.+|..++....-..-..++ .++.+|-+-..+........-+.++|.++-....--.-.+...++-.++
T Consensus 564 De~qkVR~itAlalsalaeaa~Pygie~fD-sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~ 642 (1172)
T KOG0213|consen 564 DEQQKVRTITALALSALAEAATPYGIEQFD-SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILI 642 (1172)
T ss_pred ccchhhhhHHHHHHHHHHHhcCCcchHHHH-HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHH
Confidence 356678888888888887532222221111 1334444444444555666778888888855432212222212233333
Q ss_pred hhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHH
Q psy12605 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259 (845)
Q Consensus 180 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (845)
+-.+++ +++++...+..+..+|........+ .....+|.++..+-..... ...+-+. ...
T Consensus 643 rEf~sP-DeemkkivLKVv~qcc~t~Gv~~~y-~r~dilp~ff~~fw~rrmA----------~drr~yk--------qlv 702 (1172)
T KOG0213|consen 643 REFGSP-DEEMKKIVLKVVKQCCATDGVEPAY-IRFDILPEFFFSFWGRRMA----------LDRRNYK--------QLV 702 (1172)
T ss_pred HhhCCC-hHHHHHHHHHHHHHHhcccCCCHHH-HhhhhhHHHHhhhhhhhhh----------ccccchh--------hHH
Confidence 333444 5678888889999988876443333 3455666665544321110 0000000 111
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCCh--hhHHHHhcCCccchhhHhhcCC
Q psy12605 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD--EQTQVILNCDALSHFPALLTHP 337 (845)
Q Consensus 260 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~i~~~~~l~~L~~lL~~~ 337 (845)
+..- +....+-....+..++.=+.+.++..+..++.++..+...-+ +. ..-.+...+..++..+.+.
T Consensus 703 ~ttv----------~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~di-derleE~lidgil~Afqeq 771 (1172)
T KOG0213|consen 703 DTTV----------EIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADI-DERLEERLIDGILYAFQEQ 771 (1172)
T ss_pred HHHH----------HHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccc-cHHHHHHHHHHHHHHHHhc
Confidence 1111 111222233445666666777777777777666666543211 11 0111123445555555443
Q ss_pred c--hhhHHHHHHHHHHhhcC-ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH--hHHHHHH
Q psy12605 338 K--EKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA--QTQEVVA 412 (845)
Q Consensus 338 ~--~~~~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--~~~~l~~ 412 (845)
+ ..+--....++.+-... ..... ..++..++..|++ .++.++..|+..++.++.--.. .-+.+-.
T Consensus 772 tt~d~vml~gfg~V~~~lg~r~kpyl-----pqi~stiL~rLnn-----ksa~vRqqaadlis~la~Vlktc~ee~~m~~ 841 (1172)
T KOG0213|consen 772 TTEDSVMLLGFGTVVNALGGRVKPYL-----PQICSTILWRLNN-----KSAKVRQQAADLISSLAKVLKTCGEEKLMGH 841 (1172)
T ss_pred ccchhhhhhhHHHHHHHHhhccccch-----HHHHHHHHHHhcC-----CChhHHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 2 22333444444432111 01111 1133445556666 4789999999999888641111 1112222
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC------ChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 413 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD------GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 413 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~------~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
.--.|.+.|....+++....+.+|..|... .+.. .+.++.|.-+|++.. .+++++++..++.+|.
T Consensus 842 --lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi------~dllPrltPILknrh-eKVqen~IdLvg~Iad 912 (1172)
T KOG0213|consen 842 --LGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPI------KDLLPRLTPILKNRH-EKVQENCIDLVGTIAD 912 (1172)
T ss_pred --hhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCCh------hhhcccchHhhhhhH-HHHHHHHHHHHHHHHh
Confidence 223478889999999998888887776531 1211 356788888887654 4899999999999999
Q ss_pred CCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH--HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccc-ccccc
Q psy12605 487 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW--LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ-KKQHS 563 (845)
Q Consensus 487 ~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~--l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~-~~~l~ 563 (845)
..+..........+.--|..+|.+...+++.++. +.|++.. +.-.+++..|+.-|+..+-...+. .-++.
T Consensus 913 rgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka-------IGPqdVLatLlnnLkvqeRq~RvcTtvaIa 985 (1172)
T KOG0213|consen 913 RGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA-------IGPQDVLATLLNNLKVQERQNRVCTTVAIA 985 (1172)
T ss_pred cCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh-------cCHHHHHHHHHhcchHHHHHhchhhhhhhh
Confidence 7765556566666666667777777888887755 6666642 122244445555554432211110 00111
Q ss_pred ccccccCCChhhHHHHHhCCcccchHHhhc---CCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhh
Q psy12605 564 IYMCVSPGTDEQTQVILNCDALSHFPALLT---HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCK 640 (845)
Q Consensus 564 ~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~---~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 640 (845)
++ ---+|.+.+|-.++. .|+..|+..++.+++-+-....+.-...+ .-..|.|...
T Consensus 986 IV-------------aE~c~pFtVLPalmneYrtPe~nVQnGVLkalsf~FeyigemskdYi-yav~PlleDA------- 1044 (1172)
T KOG0213|consen 986 IV-------------AETCGPFTVLPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDYI-YAVTPLLEDA------- 1044 (1172)
T ss_pred hh-------------hhhcCchhhhHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhHH-HHhhHHHHHh-------
Confidence 11 112455555555554 46677777777777765321110000000 0112222221
Q ss_pred hhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHH
Q psy12605 641 ILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAIS 720 (845)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~ 720 (845)
+.+.|+--|.-|+.++.
T Consensus 1045 ---------------------------------------------------------------lmDrD~vhRqta~~~I~ 1061 (1172)
T KOG0213|consen 1045 ---------------------------------------------------------------LMDRDLVHRQTAMNVIK 1061 (1172)
T ss_pred ---------------------------------------------------------------hccccHHHHHHHHHHHH
Confidence 25667777888888888
Q ss_pred hhcccCCHHHHHHHHHcCCchHHhhhhc-------cccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhh
Q psy12605 721 NLTISGNRDQVAKLVQEGVIPPFCDLLS-------CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQ 793 (845)
Q Consensus 721 ~l~~~~~~~~~~~l~~~~~i~~L~~~L~-------~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~ 793 (845)
+++.. .+ -.|....++.+|. +..+.++.+...++.-+-..-. -.-....+.+=+
T Consensus 1062 Hl~Lg-~~-------g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg-----------~~~~~~Y~~QGL 1122 (1172)
T KOG0213|consen 1062 HLALG-VP-------GTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALG-----------PQAMLKYCLQGL 1122 (1172)
T ss_pred HHhcC-CC-------CcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhc-----------hHHHHHHHHHhc
Confidence 88733 11 1245555555554 3567777777777665543211 111223334446
Q ss_pred cCCCHHHHHHHHHHHHHhcCcc
Q psy12605 794 NHENVEIYKLAYDIIERYFSEV 815 (845)
Q Consensus 794 ~~~~~~v~~~a~~~l~~~~~~~ 815 (845)
.|+...|++.--.+++..|-..
T Consensus 1123 FHParkVR~~yw~vyn~my~~~ 1144 (1172)
T KOG0213|consen 1123 FHPARKVRKRYWTVYNSMYHGS 1144 (1172)
T ss_pred cCcHHHHHHHHHHHHHhHhhcc
Confidence 7888888888777777665444
|
|
| >KOG1059|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=3e-06 Score=92.63 Aligned_cols=398 Identities=16% Similarity=0.196 Sum_probs=245.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 47 DMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 47 ~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
..++ .++++.-|-++..|+..+.++.-.-++ ++ ...+|+|++-| .+++|.++..|..+++.||..+|.+--.
T Consensus 147 ~Dv~-tLL~sskpYvRKkAIl~lykvFLkYPe----Al--r~~FprL~EkL-eDpDp~V~SAAV~VICELArKnPknyL~ 218 (877)
T KOG1059|consen 147 DDVF-TLLNSSKPYVRKKAILLLYKVFLKYPE----AL--RPCFPRLVEKL-EDPDPSVVSAAVSVICELARKNPQNYLQ 218 (877)
T ss_pred HHHH-HHHhcCchHHHHHHHHHHHHHHHhhhH----hH--hhhHHHHHHhc-cCCCchHHHHHHHHHHHHHhhCCccccc
Confidence 3555 889999999999998888877543322 22 23589999999 5788999999999999999988876543
Q ss_pred HHHcCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 127 VVAAGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
.-|.+.++|-++ +-=+-...+...++|+--.|..... .+++|.+++.+....++...++.++.......
T Consensus 219 -----LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s~ 288 (877)
T KOG1059|consen 219 -----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMSS 288 (877)
T ss_pred -----ccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhcc
Confidence 568888887654 4456677788888888666665555 47899999988766777777776665443333
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
+.........-++..|..++.+.|+. .+.-++.+++.+....+..++.. -
T Consensus 289 g~~d~~asiqLCvqKLr~fiedsDqN-------------------------LKYlgLlam~KI~ktHp~~Vqa~-----k 338 (877)
T KOG1059|consen 289 GMSDHSASIQLCVQKLRIFIEDSDQN-------------------------LKYLGLLAMSKILKTHPKAVQAH-----K 338 (877)
T ss_pred CCCCcHHHHHHHHHHHhhhhhcCCcc-------------------------HHHHHHHHHHHHhhhCHHHHHHh-----H
Confidence 22344456677888888889999998 88888999988887665544332 3
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVI 364 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~ 364 (845)
+.++..|.+.+++++..|+..+.-++.. +.... ++..|+..+.. .....|.+.+.-+..+|+.+. .+.+.
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmVsk-kNl~e------IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn--Y~~It 409 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMVSK-KNLME------IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN--YQYIT 409 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhhh-hhHHH------HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh--hhhhh
Confidence 4678889999999999999999998754 22222 33445555533 334777777776666654322 22232
Q ss_pred hcC-ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC-----------CCHHHHH
Q psy12605 365 DAG-LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-----------PHSNVCE 432 (845)
Q Consensus 365 ~~~-~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~-----------~~~~v~~ 432 (845)
+-. .+..|+++.+-.+ .+.-...+.-+.+++-.-+..+.. .+..+..++.+ .-.+|..
T Consensus 410 dFEWYlsVlveLa~l~~-----~~~G~~I~eQi~Dv~iRV~~iR~f-----sV~~m~~Ll~~~~~~~s~q~n~~l~eVL~ 479 (877)
T KOG1059|consen 410 DFEWYLSVLVELARLEG-----TRHGSLIAEQIIDVAIRVPSIRPF-----SVSQMSALLDDPLLAGSAQINSQLCEVLY 479 (877)
T ss_pred hHHHHHHHHHHHHhccc-----cchhhHHHHHHHHHheechhhhHh-----HHHHHHHHHhchhhccchhhccchhHHHH
Confidence 211 2344555544321 111111222233332211111111 12223333332 1357889
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc----CCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHh----HHHHH
Q psy12605 433 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI----KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE----LLPAL 504 (845)
Q Consensus 433 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll----~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~----~l~~l 504 (845)
+|+|++|..+....+..+ .+..+++-- ..+...-+..++...++++|....+...++.+.. .+..|
T Consensus 480 AaaWi~GEyse~ven~~~------~leamlrpr~~~lp~~iq~vyvqni~Klfc~~~~~~ee~~~~e~~~sL~~~i~~~l 553 (877)
T KOG1059|consen 480 AAAWILGEYSEFVENPND------TLEAMLRPRSDLLPGHIQAVYVQNIVKLFCSWCSQFEETKDFEGIVSLVNLILSFL 553 (877)
T ss_pred HHHHHHHHHHHHhhCHHH------HHHHHhcCccccCchHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHh
Confidence 999999999875443222 223333211 1111123455667788888887766555444433 33444
Q ss_pred HHhhcCCChhHHH
Q psy12605 505 NILIHHHDTSVSI 517 (845)
Q Consensus 505 ~~ll~~~d~~v~~ 517 (845)
-++..+.|-+|+.
T Consensus 554 ~qf~~s~d~EvQE 566 (877)
T KOG1059|consen 554 EQFSGSSDLEVQE 566 (877)
T ss_pred hcccCccchhHHH
Confidence 4555567777754
|
|
| >KOG2160|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=2e-07 Score=95.17 Aligned_cols=183 Identities=16% Similarity=0.204 Sum_probs=161.1
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
-+..|+.-|.++...-+ +...++..|+..+++.++.+++..+|..|+++|+.++..++..+..+++.|+++.|+..+++
T Consensus 99 ~ke~ald~Le~lve~iD-nAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls~ 177 (342)
T KOG2160|consen 99 DKEDALDNLEELVEDID-NANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILSS 177 (342)
T ss_pred HHHHHHHHHHHHHHhhh-hHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHcc
Confidence 66788888888776533 44566788999999999999999999999999999999999999999999999999999976
Q ss_pred C-chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCC
Q psy12605 337 P-KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 415 (845)
Q Consensus 337 ~-~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~ 415 (845)
. +..+|..|+.+++.+..+.+.....+...++...|..++.+.+ .+..++..+...+..+...+......+...++
T Consensus 178 ~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~---~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~~~f 254 (342)
T KOG2160|consen 178 DDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNN---TSVKLKRKALFLLSLLLQEDKSDEDIASSLGF 254 (342)
T ss_pred CCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCC---cchHHHHHHHHHHHHHHHhhhhhhhHHHHhhh
Confidence 4 5678899999999999999999999999999999999999864 57899999999999999888777777888889
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 416 VPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 416 i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
...+..+....+.++.+.++.++.....
T Consensus 255 ~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 255 QRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred hHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 9999999999999999999988876654
|
|
| >KOG1062|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=8.1e-05 Score=83.02 Aligned_cols=289 Identities=18% Similarity=0.222 Sum_probs=161.0
Q ss_pred hHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChh
Q psy12605 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 212 (845)
Q Consensus 133 i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 212 (845)
...|.+=|++++.-++-.|+.+||+++.. +-.|+ ..|.+.+++++. +..+|+.|+.|...+.+..+ .
T Consensus 109 tNslknDL~s~nq~vVglAL~alg~i~s~-Emard------lapeVe~Ll~~~-~~~irKKA~Lca~r~irK~P-----~ 175 (866)
T KOG1062|consen 109 TNSLKNDLNSSNQYVVGLALCALGNICSP-EMARD------LAPEVERLLQHR-DPYIRKKAALCAVRFIRKVP-----D 175 (866)
T ss_pred HHHHHhhccCCCeeehHHHHHHhhccCCH-HHhHH------hhHHHHHHHhCC-CHHHHHHHHHHHHHHHHcCc-----h
Confidence 34455567778888888899999999732 22222 356677777775 45788888888888877552 2
Q ss_pred HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc
Q psy12605 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL 292 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 292 (845)
..+.+++...+++.+.+.. +...++..+..+...+++....+.+ .++-++..|
T Consensus 176 l~e~f~~~~~~lL~ek~hG-------------------------VL~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iL 228 (866)
T KOG1062|consen 176 LVEHFVIAFRKLLCEKHHG-------------------------VLIAGLHLITELCKISPDALSYFRD--LVPSLVKIL 228 (866)
T ss_pred HHHHhhHHHHHHHhhcCCc-------------------------eeeeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHH
Confidence 3556777777777776666 4444444455555554444444422 344444444
Q ss_pred c---------------CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc------hhhHHHHHHHHHH
Q psy12605 293 S---------------HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK------EKICKEAVWFLSN 351 (845)
Q Consensus 293 ~---------------~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~------~~~~~~a~~~L~n 351 (845)
+ -++|-++...++.|+-+-.++.+....+- ..|-+.....+ ..+..++..++..
T Consensus 229 k~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~-----DiLaqvatntdsskN~GnAILYE~V~TI~~ 303 (866)
T KOG1062|consen 229 KQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMN-----DILAQVATNTDSSKNAGNAILYECVRTIMD 303 (866)
T ss_pred HHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHHhcccccccchhHHHHHHHHHHHh
Confidence 1 13455677777777766655444333322 12333332111 2233333333333
Q ss_pred hhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHH
Q psy12605 352 ITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 431 (845)
Q Consensus 352 l~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~ 431 (845)
+-.. ...+. -++..|-++|.+ .+..+|+-|...|......++...+.= =..+++.|++++..++
T Consensus 304 I~~~-~~Lrv-----lainiLgkFL~n-----~d~NirYvaLn~L~r~V~~d~~avqrH-----r~tIleCL~DpD~SIk 367 (866)
T KOG1062|consen 304 IRSN-SGLRV-----LAINILGKFLLN-----RDNNIRYVALNMLLRVVQQDPTAVQRH-----RSTILECLKDPDVSIK 367 (866)
T ss_pred ccCC-chHHH-----HHHHHHHHHhcC-----CccceeeeehhhHHhhhcCCcHHHHHH-----HHHHHHHhcCCcHHHH
Confidence 3111 11100 022333334433 244555555555555554444322211 1236788888999999
Q ss_pred HHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCC
Q psy12605 432 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 490 (845)
Q Consensus 432 ~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~ 490 (845)
..|+..+..|.-.+ +++. .++.|+.+|... +.+++..++.-+..++....|
T Consensus 368 rralELs~~lvn~~-Nv~~------mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP 418 (866)
T KOG1062|consen 368 RRALELSYALVNES-NVRV------MVKELLEFLESS-DEDFKADIASKIAELAEKFAP 418 (866)
T ss_pred HHHHHHHHHHhccc-cHHH------HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCC
Confidence 98888888777543 2332 356677777766 557777777777777665543
|
|
| >KOG2759|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-07 Score=93.41 Aligned_cols=297 Identities=14% Similarity=0.116 Sum_probs=194.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
.+.++ .++...|.-....+...+.++...+... ..-..-.=....|..+++++.+++....|+++|..+... ++.+.
T Consensus 116 ~~~fl-~ll~r~d~~iv~~~~~Ils~la~~g~~~-~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~-~eyR~ 192 (442)
T KOG2759|consen 116 WLSFL-NLLNRQDTFIVEMSFRILSKLACFGNCK-MELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRV-DEYRY 192 (442)
T ss_pred hHHHH-HHHhcCChHHHHHHHHHHHHHHHhcccc-ccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcC-cchhh
Confidence 45666 6777777777776666666666554321 100000002444566666667778888999999999876 78999
Q ss_pred HHHHcCChHHHHHhhCC--CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 126 EVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s--~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
.++..+++..++..+.+ .+-.++.+.+.|++-+... +...+.+...+.|+.|..+++++..+.+.|.++.++.|++.
T Consensus 193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn-~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~ 271 (442)
T KOG2759|consen 193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFN-PHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLD 271 (442)
T ss_pred eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcC-HHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999953 3668899999999999965 44556667778999999999999888999999999999998
Q ss_pred CCCCCCCh------hHHhhHHHHHHhhccc---CCchh--hHHHHH-HHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC
Q psy12605 204 NKDPPPSM------STIIELLPALNILIHH---HDTSV--SIYLWL-SIIEKNPQISKILVSKMKILVDTVWALSYLTDG 271 (845)
Q Consensus 204 ~~~~~~~~------~~~~~~l~~L~~ll~~---~~~~~--~~~~~~-~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 271 (845)
..+..... ....++.+.+ +.+.. .|+++ .+..+. .+-.... .+...+ ++......-.-..
T Consensus 272 k~~~~~~~k~~~~~mv~~~v~k~l-~~L~~rkysDEDL~~di~~L~e~L~~svq---~LsSFD----eY~sEl~sG~L~W 343 (442)
T KOG2759|consen 272 KGPDRETKKDIASQMVLCKVLKTL-QSLEERKYSDEDLVDDIEFLTEKLKNSVQ---DLSSFD----EYKSELRSGRLEW 343 (442)
T ss_pred cCchhhHHHHHHHHHHhcCchHHH-HHHHhcCCCcHHHHHHHHHHHHHHHHHHH---hhccHH----HHHHHHHhCCcCC
Confidence 76322221 1122333333 33332 34431 011110 0000000 000000 0000000000000
Q ss_pred C---------hhhHHHHHhc--CchhhHHhhccCC-chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCch
Q psy12605 272 G---------NDQIQMVIDS--GVVPSLIPLLSHK-EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339 (845)
Q Consensus 272 ~---------~~~~~~~~~~--g~i~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 339 (845)
+ .++...+-+. .++..|+.+|+.. ++.+...|+.=|+..+...+..+..+.+.|+-..++++++++|+
T Consensus 344 SP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~ 423 (442)
T KOG2759|consen 344 SPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDP 423 (442)
T ss_pred CccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCc
Confidence 0 1233333332 4678899999655 58888999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhc
Q psy12605 340 KICKEAVWFLSNITA 354 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~ 354 (845)
++|.+|+.++..+..
T Consensus 424 ~Vry~ALlavQ~lm~ 438 (442)
T KOG2759|consen 424 EVRYHALLAVQKLMV 438 (442)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999998887643
|
|
| >KOG1060|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.8e-05 Score=86.12 Aligned_cols=288 Identities=13% Similarity=0.140 Sum_probs=176.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
-..+. ++|+++....+..|+.-+..+...+++ + +.++|..|+.. .+.+.++++..-.-|...|..+++...
T Consensus 37 ~~dL~-~lLdSnkd~~KleAmKRIia~iA~G~d--v-----S~~Fp~VVKNV-askn~EVKkLVyvYLlrYAEeqpdLAL 107 (968)
T KOG1060|consen 37 HDDLK-QLLDSNKDSLKLEAMKRIIALIAKGKD--V-----SLLFPAVVKNV-ASKNIEVKKLVYVYLLRYAEEQPDLAL 107 (968)
T ss_pred hHHHH-HHHhccccHHHHHHHHHHHHHHhcCCc--H-----HHHHHHHHHHh-hccCHHHHHHHHHHHHHHhhcCCCcee
Confidence 44677 899999999999999999988887765 2 34689999999 578899999998888888876554332
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
. -|..+-+-|+++++.+|..|+++|..|=-. ..... ++-.+-++.... ..-+|..|+.++-.+-.-.
T Consensus 108 L-----SIntfQk~L~DpN~LiRasALRvlSsIRvp--~IaPI-----~llAIk~~~~D~-s~yVRk~AA~AIpKLYsLd 174 (968)
T KOG1060|consen 108 L-----SINTFQKALKDPNQLIRASALRVLSSIRVP--MIAPI-----MLLAIKKAVTDP-SPYVRKTAAHAIPKLYSLD 174 (968)
T ss_pred e-----eHHHHHhhhcCCcHHHHHHHHHHHHhcchh--hHHHH-----HHHHHHHHhcCC-cHHHHHHHHHhhHHHhcCC
Confidence 2 577888899999999999999999876321 11110 011122233333 5589999999998887654
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
. ......+..+-.++.+.++- +.-.|+.+.-.++ +++.+.+ .+-.
T Consensus 175 ~-----e~k~qL~e~I~~LLaD~spl-------------------------VvgsAv~AF~evC---PerldLI--Hkny 219 (968)
T KOG1060|consen 175 P-----EQKDQLEEVIKKLLADRSPL-------------------------VVGSAVMAFEEVC---PERLDLI--HKNY 219 (968)
T ss_pred h-----hhHHHHHHHHHHHhcCCCCc-------------------------chhHHHHHHHHhc---hhHHHHh--hHHH
Confidence 2 22346677777788888887 4444444443332 3333333 2334
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCC---hhhHHHHhc-CC------------------------ccchhhHhhcCC
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGT---DEQTQVILN-CD------------------------ALSHFPALLTHP 337 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~---~~~~~~i~~-~~------------------------~l~~L~~lL~~~ 337 (845)
..+..+|.+-++--|...++.|..-+... +.......+ .| .+...-.++.+.
T Consensus 220 rklC~ll~dvdeWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~ 299 (968)
T KOG1060|consen 220 RKLCRLLPDVDEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSR 299 (968)
T ss_pred HHHHhhccchhhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcC
Confidence 55555655544444555555554443211 100000000 00 122333345566
Q ss_pred chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 338 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 338 ~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
++.+..+++.+...++.... ...++.+|+++|+. ++.+|.-....+..++...
T Consensus 300 n~sVVmA~aql~y~lAP~~~-------~~~i~kaLvrLLrs------~~~vqyvvL~nIa~~s~~~ 352 (968)
T KOG1060|consen 300 NPSVVMAVAQLFYHLAPKNQ-------VTKIAKALVRLLRS------NREVQYVVLQNIATISIKR 352 (968)
T ss_pred CcHHHHHHHhHHHhhCCHHH-------HHHHHHHHHHHHhc------CCcchhhhHHHHHHHHhcc
Confidence 77777777777777744321 12346778888876 4566666666666555443
|
|
| >KOG0213|consensus | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.7e-05 Score=86.86 Aligned_cols=424 Identities=13% Similarity=0.106 Sum_probs=219.1
Q ss_pred ChHHHHHhhC----CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc----CCCCHHHHHHHHHHHHHhhc
Q psy12605 132 AVPLFLRLLM----SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK----PDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 132 ~i~~L~~lL~----s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~----~~~~~~~~~~a~~~L~~l~~ 203 (845)
++...+.-+. +.++-++....++.+-.++. =++|.|+.+|+ +..+-+-|...+.+...+|.
T Consensus 473 Gla~mistmrpDidn~deYVRnttarafavvasa-----------lgip~llpfLkavc~SkkSwqaRhTgIkivqqIai 541 (1172)
T KOG0213|consen 473 GLATMISTMRPDIDNKDEYVRNTTARAFAVVASA-----------LGIPALLPFLKAVCGSKKSWQARHTGIKIVQQIAI 541 (1172)
T ss_pred hhHHHHHhhcCCcccccHHHHHHHHHHHHHHHHH-----------hCcHHHHHHHHHHhccccchhhhchhhHHHHHHHH
Confidence 4444444443 34677888888877776632 13555555552 22233455566666666665
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChh-hHHHHHhc
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND-QIQMVIDS 282 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~ 282 (845)
-.. +..+....+.+..+-+.+.++... ++..++.+++++++...- .++.+ .
T Consensus 542 l~G-csvlphl~~lv~ii~~gl~De~qk-------------------------VR~itAlalsalaeaa~Pygie~f--D 593 (1172)
T KOG0213|consen 542 LSG-CSVLPHLKPLVKIIEHGLKDEQQK-------------------------VRTITALALSALAEAATPYGIEQF--D 593 (1172)
T ss_pred Hhc-chhhhhhHHHHHHHHHhhcccchh-------------------------hhhHHHHHHHHHHHhcCCcchHHH--H
Confidence 432 222334445555555555555555 778888888888765332 22222 1
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
.++.+|.+-+.........+-+++++.++-..+..........++-.++.=..++|++.++..+.++..+|...... ..
T Consensus 594 sVlkpLwkgir~hrgk~laafLkAigyliplmd~eya~yyTrevmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~-~~ 672 (1172)
T KOG0213|consen 594 SVLKPLWKGIRQHRGKELAAFLKAIGYLIPLMDAEYASYYTREVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVE-PA 672 (1172)
T ss_pred HHHHHHHHHHHHccChHHHHHHHHHhhccccccHHHHHHhHHHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCC-HH
Confidence 34455555555555566777788999988655544444444445566777778899999999999999987653221 33
Q ss_pred HHhcCChHHHHHHhhhcc-cc-cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 363 VIDAGLLPKIIANLQKVG-RI-VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~~-~~-~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
.+..+++|.++...-... .. ..+..........+++ ++-....+..++.=+.++.+..|.-++.+..+
T Consensus 673 y~r~dilp~ff~~fw~rrmA~drr~ykqlv~ttv~ia~----------KvG~~~~v~R~v~~lkde~e~yrkm~~etv~r 742 (1172)
T KOG0213|consen 673 YIRFDILPEFFFSFWGRRMALDRRNYKQLVDTTVEIAA----------KVGSDPIVSRVVLDLKDEPEQYRKMVAETVSR 742 (1172)
T ss_pred HHhhhhhHHHHhhhhhhhhhccccchhhHHHHHHHHHH----------HhCchHHHHHHhhhhccccHHHHHHHHHHHHH
Confidence 345566666665443210 00 0011111111111111 11111234445555667777666666655555
Q ss_pred hhcCChH-HHHHHHhCCChHHHHhccCCC-CChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH
Q psy12605 441 IIGDGPQ-LRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 518 (845)
Q Consensus 441 l~~~~~~-~~~~l~~~g~l~~L~~ll~~~-~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~ 518 (845)
+...-.. --+.-...-.+..++..+..+ ....+.-.+..++.|=.-+. .......++..+.+.|++..+.++..
T Consensus 743 i~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r----~kpylpqi~stiL~rLnnksa~vRqq 818 (1172)
T KOG0213|consen 743 IVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGR----VKPYLPQICSTILWRLNNKSAKVRQQ 818 (1172)
T ss_pred HHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhc----cccchHHHHHHHHHHhcCCChhHHHH
Confidence 4431100 000111222334444444433 23344445555555433221 01234556777777888777777654
Q ss_pred HH--HHhhhcCch--hhHHHHhhhhhhHHHHhhhccCCCCcccccccccc---cccccCCChhhHHHHHhCCcccchHHh
Q psy12605 519 LW--LSIIEKNPQ--ISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSI---YMCVSPGTDEQTQVILNCDALSHFPAL 591 (845)
Q Consensus 519 ~~--l~~l~~~~~--~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~---l~nl~~~~~~~~~~l~~~~~l~~L~~l 591 (845)
+. .+.+..--. ....++.+.|++ |.++|....+.+. ...+.+ +.|...-+.. .-=-.+++|.|..+
T Consensus 819 aadlis~la~Vlktc~ee~~m~~lGvv--LyEylgeeypEvL--gsILgAikaI~nvigm~km---~pPi~dllPrltPI 891 (1172)
T KOG0213|consen 819 AADLISSLAKVLKTCGEEKLMGHLGVV--LYEYLGEEYPEVL--GSILGAIKAIVNVIGMTKM---TPPIKDLLPRLTPI 891 (1172)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHhhHH--HHHhcCcccHHHH--HHHHHHHHHHHHhcccccc---CCChhhhcccchHh
Confidence 32 222221000 001122222322 4455554433321 112222 2222100000 00013789999999
Q ss_pred hcCCChhHHHHHHHHHhhhccCCHH
Q psy12605 592 LTHPKEKICKEAVWFLSNITAGNQA 616 (845)
Q Consensus 592 l~~~~~~v~~~a~~~Lsnl~~~~~~ 616 (845)
|++.+..|+..+...++.|+...++
T Consensus 892 LknrheKVqen~IdLvg~IadrgpE 916 (1172)
T KOG0213|consen 892 LKNRHEKVQENCIDLVGTIADRGPE 916 (1172)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCcc
Confidence 9999999999999999999976654
|
|
| >KOG1062|consensus | Back alignment and domain information |
|---|
Probab=98.69 E-value=6.2e-06 Score=91.58 Aligned_cols=368 Identities=12% Similarity=0.149 Sum_probs=229.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 47 DMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 47 ~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
|++. ++++..++-.+.+|+.+..++....++ ..+. +++.-.++| .+.+..+-..++..+..+|..+++....
T Consensus 145 peVe-~Ll~~~~~~irKKA~Lca~r~irK~P~-l~e~-----f~~~~~~lL-~ek~hGVL~~~l~l~~e~c~~~~~~l~~ 216 (866)
T KOG1062|consen 145 PEVE-RLLQHRDPYIRKKAALCAVRFIRKVPD-LVEH-----FVIAFRKLL-CEKHHGVLIAGLHLITELCKISPDALSY 216 (866)
T ss_pred HHHH-HHHhCCCHHHHHHHHHHHHHHHHcCch-HHHH-----hhHHHHHHH-hhcCCceeeeHHHHHHHHHhcCHHHHHH
Confidence 4444 788999999999999999888775543 2233 477778888 4667788888999999999988877776
Q ss_pred HHHcCChHHHHHhhCC---------------CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC-----CC
Q psy12605 127 VVAAGAVPLFLRLLMS---------------PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP-----DI 186 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s---------------~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~-----~~ 186 (845)
+.+ .++.|+..|+. ++|-+|...++.|+-+...+++..+.+.+ .|-+...+ +.
T Consensus 217 fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D-----iLaqvatntdsskN~ 289 (866)
T KOG1062|consen 217 FRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND-----ILAQVATNTDSSKNA 289 (866)
T ss_pred HHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH-----HHHHHHhcccccccc
Confidence 666 77777777642 36789999999999999888777666543 22233321 11
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH
Q psy12605 187 PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266 (845)
Q Consensus 187 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~ 266 (845)
-..+...++.++..+-.+. ....-++..|-+.+.+.|.. ++.-++.+|.
T Consensus 290 GnAILYE~V~TI~~I~~~~------~LrvlainiLgkFL~n~d~N-------------------------irYvaLn~L~ 338 (866)
T KOG1062|consen 290 GNAILYECVRTIMDIRSNS------GLRVLAINILGKFLLNRDNN-------------------------IRYVALNMLL 338 (866)
T ss_pred hhHHHHHHHHHHHhccCCc------hHHHHHHHHHHHHhcCCccc-------------------------eeeeehhhHH
Confidence 2356666666666554333 23455667777777777766 6777777777
Q ss_pred HhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHH
Q psy12605 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAV 346 (845)
Q Consensus 267 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~ 346 (845)
+....+++..+.- =..+++.|++++..++..|++.+..++..+ +... .+..++..|.+.+++.+....
T Consensus 339 r~V~~d~~avqrH-----r~tIleCL~DpD~SIkrralELs~~lvn~~--Nv~~-----mv~eLl~fL~~~d~~~k~~~a 406 (866)
T KOG1062|consen 339 RVVQQDPTAVQRH-----RSTILECLKDPDVSIKRRALELSYALVNES--NVRV-----MVKELLEFLESSDEDFKADIA 406 (866)
T ss_pred hhhcCCcHHHHHH-----HHHHHHHhcCCcHHHHHHHHHHHHHHhccc--cHHH-----HHHHHHHHHHhccHHHHHHHH
Confidence 7766655543332 134677778888888888888888776432 1121 345577777766777777766
Q ss_pred HHHHHhhcCChH----HHHH----------HHhcCChHHHHHHhhhcccc--------------------cCChhHHHHH
Q psy12605 347 WFLSNITAGNQA----QVQA----------VIDAGLLPKIIANLQKVGRI--------------------VLRPNLQFEA 392 (845)
Q Consensus 347 ~~L~nl~~~~~~----~~~~----------l~~~~~i~~Lv~lL~~~~~~--------------------~~~~~v~~~a 392 (845)
.-+..++..-.+ .++. ++..+++..++.++.+..+- -+.+.+...|
T Consensus 407 s~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa 486 (866)
T KOG1062|consen 407 SKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVA 486 (866)
T ss_pred HHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHH
Confidence 666655432111 1111 12223455566665544110 0244556778
Q ss_pred HHHHHHHh----cC-ChHhHHHHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc
Q psy12605 393 AWALTNIA----SG-TSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI 465 (845)
Q Consensus 393 ~~~L~~l~----~~-~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll 465 (845)
.|+++.-. .+ +.+.-..+.+..++..+..++.+ .+..++..|+.+|..++..-... ..-++.++.-+
T Consensus 487 ~W~IGEYGdlll~~~~~~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~~s~------~~ri~~lI~~~ 560 (866)
T KOG1062|consen 487 SWCIGEYGDLLLDGANEEEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRFHSS------SERIKQLISSY 560 (866)
T ss_pred HHHhhhhhHHhhcCccccCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhcccc------HHHHHHHHHHh
Confidence 88888743 11 12222234445667778777764 45778899999999998643222 11234455555
Q ss_pred CCCCChhHHHHHH
Q psy12605 466 KPDIPISFLRNVT 478 (845)
Q Consensus 466 ~~~~~~~~~~~~~ 478 (845)
...-+.+++..+.
T Consensus 561 ~~s~~~elQQRa~ 573 (866)
T KOG1062|consen 561 KSSLDTELQQRAV 573 (866)
T ss_pred cccccHHHHHHHH
Confidence 5555556655543
|
|
| >KOG2759|consensus | Back alignment and domain information |
|---|
Probab=98.68 E-value=9.6e-06 Score=84.03 Aligned_cols=321 Identities=12% Similarity=0.135 Sum_probs=212.3
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH------cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA------AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~------~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.+..++.+++....++....++..+..+-+.+......+-+ .-..++.+.+|...+.-+.+.+.+++..++..+
T Consensus 66 ~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la~~g 145 (442)
T KOG2759|consen 66 YVKTFINLLSHIDKDDTVQYVLTLIDDMLSEDRSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLACFG 145 (442)
T ss_pred HHHHHHHHhchhhhHHHHHHHHHHHHHHHhhCchHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHHHhc
Confidence 46677777765555666666666666665543333222211 234788999999999999999999999988665
Q ss_pred hhhH---HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc--CCchhhHHHH
Q psy12605 163 PQLR---DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH--HDTSVSIYLW 237 (845)
Q Consensus 163 ~~~r---~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~~ 237 (845)
...- +.-+. ...|-..+++..+......++.||..+.+-++....+. ....+..++..+.+ .+-+
T Consensus 146 ~~~~~~~e~~~~---~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v-~adg~~~l~~~l~s~~~~~Q------ 215 (442)
T KOG2759|consen 146 NCKMELSELDVY---KGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFV-IADGVSLLIRILASTKCGFQ------ 215 (442)
T ss_pred cccccchHHHHH---HHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheee-ecCcchhhHHHHhccCcchh------
Confidence 4221 11111 23344555555556788889999999998875544443 33444555555432 2333
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCCh-
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTD- 315 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~- 315 (845)
++...+.|+.-|+..+ ...+.+..-+.++.|...+++ ..++|..-.+.++.|+....+
T Consensus 216 -------------------lQYqsifciWlLtFn~-~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~ 275 (442)
T KOG2759|consen 216 -------------------LQYQSIFCIWLLTFNP-HAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPD 275 (442)
T ss_pred -------------------HHHHHHHHHHHhhcCH-HHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch
Confidence 6666666666666543 344666667999999999954 578899999999999987663
Q ss_pred -----hhHHHHhcCCccchhhHhhcC--CchhhHHHHHHHHHHh-------hcC--------------C---------hH
Q psy12605 316 -----EQTQVILNCDALSHFPALLTH--PKEKICKEAVWFLSNI-------TAG--------------N---------QA 358 (845)
Q Consensus 316 -----~~~~~i~~~~~l~~L~~lL~~--~~~~~~~~a~~~L~nl-------~~~--------------~---------~~ 358 (845)
.....++.+++.+.+-.+-.. .|+++....-..-..+ +.- + .+
T Consensus 276 ~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~e 355 (442)
T KOG2759|consen 276 RETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRE 355 (442)
T ss_pred hhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHH
Confidence 334556666655544444432 3555544332222211 110 0 11
Q ss_pred HHHHHHh--cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHH
Q psy12605 359 QVQAVID--AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVW 436 (845)
Q Consensus 359 ~~~~l~~--~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~ 436 (845)
+...+.+ -.++..|+++|... .+|.+-.-||.=++..+.+.|+....+.+.|+=+.+.+++++++++|+..|+.
T Consensus 356 Na~rlnennyellkiL~~lLe~s----~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Llnh~d~~Vry~ALl 431 (442)
T KOG2759|consen 356 NADRLNENNYELLKILIKLLETS----NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLNHEDPEVRYHALL 431 (442)
T ss_pred hHHHHhhccHHHHHHHHHHHhcC----CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhcCCCchHHHHHHH
Confidence 1122222 12688999999886 47888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhhc
Q psy12605 437 ALGNIIG 443 (845)
Q Consensus 437 ~L~nl~~ 443 (845)
|+-.+..
T Consensus 432 avQ~lm~ 438 (442)
T KOG2759|consen 432 AVQKLMV 438 (442)
T ss_pred HHHHHHh
Confidence 8876643
|
|
| >KOG4413|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.7e-05 Score=78.89 Aligned_cols=377 Identities=12% Similarity=0.132 Sum_probs=233.2
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccH---HHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHH
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPI---EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV 128 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~---~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~ 128 (845)
..|..+|..++..+...+..++.......+ ..++++|+.+.++.++. ..+.++-..|...+..++.. +.....++
T Consensus 89 rGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIg-geddeVAkAAiesikrialf-paaleaiF 166 (524)
T KOG4413|consen 89 RGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIG-GEDDEVAKAAIESIKRIALF-PAALEAIF 166 (524)
T ss_pred hcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHc-CCcHHHHHHHHHHHHHHHhc-HHHHHHhc
Confidence 577788999999999999998876542222 44558999999999994 56678999999999999865 77777888
Q ss_pred HcCChHHH--HHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 129 AAGAVPLF--LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 129 ~~g~i~~L--~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
+.+....+ ..+--..+.-.|...+..+-.|.+-+++........|.+..|..-+....+.-++.+++.....+....
T Consensus 167 eSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaete- 245 (524)
T KOG4413|consen 167 ESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETE- 245 (524)
T ss_pred ccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHh-
Confidence 77766554 333334455678888888999998899888888899999988888876556667777888888887655
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchh--hHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh--cCChhhHHHHHhc
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSV--SIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT--DGGNDQIQMVIDS 282 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~~ 282 (845)
....+....+.+..+...+...|.+. ..+++. .....+.+.+ +...+ .+++.
T Consensus 246 HgreflaQeglIdlicnIIsGadsdPfekfralm---------------------gfgkffgkeaimdvsee---aicea 301 (524)
T KOG4413|consen 246 HGREFLAQEGLIDLICNIISGADSDPFEKFRALM---------------------GFGKFFGKEAIMDVSEE---AICEA 301 (524)
T ss_pred hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHH---------------------HHHHHhcchHHhhcCHH---HHHHH
Confidence 34556667889999998887655541 111110 0000011100 00010 11110
Q ss_pred --CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc--cchhhHhhcCC-chhhHHHHHHHHHHhhcCCh
Q psy12605 283 --GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA--LSHFPALLTHP-KEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 283 --g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~--l~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~ 357 (845)
-.+....+++...++..+..|+.++|-+-+. .+..+.+.+.|- ...++.-..+. ...-+..+..+|.+++....
T Consensus 302 liiaidgsfEmiEmnDpdaieaAiDalGilGSn-teGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagelr 380 (524)
T KOG4413|consen 302 LIIAIDGSFEMIEMNDPDAIEAAIDALGILGSN-TEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGELR 380 (524)
T ss_pred HHHHHHhhHHhhhcCCchHHHHHHHHHHhccCC-cchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhcccc
Confidence 1233445566778899999999999988544 344555555542 22333222222 23344556677777744321
Q ss_pred HHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHH
Q psy12605 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWA 437 (845)
Q Consensus 358 ~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~ 437 (845)
..-..+.+.. ...+.... .+...+.. ....-...+...++.+.++++..+..+
T Consensus 381 lkpeqitDgk------------------aeerlrcl-ifdaaaqs--------tkldPleLFlgilqQpfpEihcAalkt 433 (524)
T KOG4413|consen 381 LKPEQITDGK------------------AEERLRCL-IFDAAAQS--------TKLDPLELFLGILQQPFPEIHCAALKT 433 (524)
T ss_pred CChhhccccH------------------HHHHHHHH-HHHHHhhc--------cCCChHHHHHHHHcCCChhhHHHHHHH
Confidence 1111111100 11111111 11111111 112345668888999999999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCC--hhHHHHHHHHHHH
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP--ISFLRNVTWVIVN 483 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~--~~~~~~~~~~l~n 483 (845)
+..++......+..+...|.+..+++--..+.. .+-+-.++.++.+
T Consensus 434 fTAiaaqPWalkeifakeefieiVtDastEhaKaakdAkYeccKAiae 481 (524)
T KOG4413|consen 434 FTAIAAQPWALKEIFAKEEFIEIVTDASTEHAKAAKDAKYECCKAIAE 481 (524)
T ss_pred HHHHHcCcHHHHHHhcCccceeeecccchhhHHHHHHHHHHHHHHHHH
Confidence 999998877677777777777776665443322 3334455555543
|
|
| >KOG1789|consensus | Back alignment and domain information |
|---|
Probab=98.60 E-value=0.00091 Score=76.35 Aligned_cols=594 Identities=16% Similarity=0.168 Sum_probs=317.9
Q ss_pred HHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC----------CCh--hHHHHHHHHHHHHhcCChhhHHHHHH-
Q psy12605 63 LLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS----------DRP--NLQFEAAWALTNIASGTSAQTQEVVA- 129 (845)
Q Consensus 63 ~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~--~i~~~a~~~L~~la~~~~~~~~~i~~- 129 (845)
+.|+..|..+-.....-+.+++...|++..|...+++. +++ .+....+.++.-.+.. ++.+..+.+
T Consensus 1402 L~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dmav~vc~~v~~c~SVaaQF-E~cR~~~~Em 1480 (2235)
T KOG1789|consen 1402 LSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMAVRVCIHVCDCFSVAAQF-EACRQRLMEM 1480 (2235)
T ss_pred hHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcchhhHHHHHHHHHHHHHHH-HHHHHHHhhh
Confidence 44555555443333345678999999999999988543 222 3445566666666653 566666776
Q ss_pred cCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC--------------CCC-----HH
Q psy12605 130 AGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP--------------DIP-----IS 189 (845)
Q Consensus 130 ~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~--------------~~~-----~~ 189 (845)
...|.-|+.++.= .-+.+...++.++...+-+ +..+..+.++|++=.++.+|-+ +.+ .+
T Consensus 1481 PSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd-~~LQ~~LfqAG~LWYlLp~Lf~YDyTlEESg~q~Se~~n~Q~~aNs 1559 (2235)
T KOG1789|consen 1481 PSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVD-TLLQFQLFQAGVLWYLLPHLFHYDYTLEESGVQHSEDSNKQSLANS 1559 (2235)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHHHHHHHhhh-HHHHHHHHHhhhHHHHHHHHhcccccccccCccccccchHHHHHHH
Confidence 4677778887763 3678889999999999954 6789999999998888877621 111 23
Q ss_pred HHHHHHHHHHHhhcCC---CCCCChh----HHhh-HHHHHHhhcccCCchhhHHHHHHHhhhChhhH-------Hh--hh
Q psy12605 190 FLRNVTWVIVNLCRNK---DPPPSMS----TIIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQIS-------KI--LV 252 (845)
Q Consensus 190 ~~~~a~~~L~~l~~~~---~~~~~~~----~~~~-~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~-------~~--~~ 252 (845)
..+.++.+|+.|.... ..-+... ...+ .-|.+.+.++.+..+--++ ..+-.-.+|.+- .+ |.
T Consensus 1560 lA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iLk-~LNsN~E~Py~IWNn~TRaELLeFv 1638 (2235)
T KOG1789|consen 1560 LARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVLK-TLNSNMENPYMIWNNGTRAELLEFV 1638 (2235)
T ss_pred HHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHHH-HhhcCCCCceeeecCccHHHHHHHH
Confidence 4445666676665432 1111111 1111 2244444443322110000 000011112110 00 01
Q ss_pred hh----------------------------------------------HHHHHHHHHHHHHhhcCChhhHHHHHhcCch-
Q psy12605 253 SK----------------------------------------------MKILVDTVWALSYLTDGGNDQIQMVIDSGVV- 285 (845)
Q Consensus 253 ~~----------------------------------------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i- 285 (845)
+. .+-..-|...|.|+..+........ +...+
T Consensus 1639 e~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~Fa~~LlDyI~S~~~~l~~~~-~~~~~s 1717 (2235)
T KOG1789|consen 1639 ERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKFAIDLLDYIKSHSAELTGAP-KPKAIS 1717 (2235)
T ss_pred HHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHHHHHHHHHHHHhHHHhcCCC-Cccccc
Confidence 00 0000011111112111100000000 00000
Q ss_pred hhHHhh---c---cC----CchhhHHHHHHHHHHHhcCChhhHHHHhcC----CccchhhHhhc-CCchhhHHHHHHHHH
Q psy12605 286 PSLIPL---L---SH----KEVKVQTASLRAVGNIVTGTDEQTQVILNC----DALSHFPALLT-HPKEKICKEAVWFLS 350 (845)
Q Consensus 286 ~~Lv~l---L---~~----~~~~v~~~al~~L~nl~~~~~~~~~~i~~~----~~l~~L~~lL~-~~~~~~~~~a~~~L~ 350 (845)
.-++.+ . .+ +.+.-...++.+|.|+...+++....+-.. |.++.+...+. ++++.++.-|+.++.
T Consensus 1718 ~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~ 1797 (2235)
T KOG1789|consen 1718 DDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVIL 1797 (2235)
T ss_pred cchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHH
Confidence 000000 0 00 122345678999999998887655444322 66677777774 467889999999888
Q ss_pred HhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh-CCCCHH
Q psy12605 351 NITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL-MSPHSN 429 (845)
Q Consensus 351 nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~ 429 (845)
-+.+. .++...+.+.+.+..|+.+|.+ -|..+..+...|..+++. ++..+...++|++..+..++ .+.++.
T Consensus 1798 ~~Tan-~~Cv~~~a~~~vL~~LL~lLHS------~PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~Q 1869 (2235)
T KOG1789|consen 1798 LATAN-KECVTDLATCNVLTTLLTLLHS------QPSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQ 1869 (2235)
T ss_pred HHhcc-cHHHHHHHhhhHHHHHHHHHhc------ChHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHH
Confidence 77554 5667888889999999999976 478888888888888765 46777788888887777666 566788
Q ss_pred HHHHHHHHHHHhhcC---ChHHHHHH-----------HhCCChHHHHhccCCCC-C------hhHHHHHHHHH----HHh
Q psy12605 430 VCEQAVWALGNIIGD---GPQLRDYV-----------INMGVVPPLLSFIKPDI-P------ISFLRNVTWVI----VNL 484 (845)
Q Consensus 430 v~~~a~~~L~nl~~~---~~~~~~~l-----------~~~g~l~~L~~ll~~~~-~------~~~~~~~~~~l----~nL 484 (845)
.|.+++..++.+..+ +|.++-.+ ++.|- +..++.++... + ..........+ +.+
T Consensus 1870 qRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~P-EAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~ 1948 (2235)
T KOG1789|consen 1870 QRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSP-EAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKL 1948 (2235)
T ss_pred HHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCH-HHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHH
Confidence 999999999999864 23222111 11122 45555554322 1 11111122222 222
Q ss_pred hcCC--CCCCChhHHHhHHHHHHHhhcCCChhHHHH-HHH-HhhhcCch----hhHHHHhhhhhhHHHHhhhccCCCCcc
Q psy12605 485 CRNK--DPPPSMSTIIELLPALNILIHHHDTSVSIY-LWL-SIIEKNPQ----ISKILVSKMKVCSRYLYYLSHNSGPMS 556 (845)
Q Consensus 485 ~~~~--~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~l-~~l~~~~~----~~~~~~~~~~~~~~L~~ll~~~~~~~~ 556 (845)
.+.. .|......-++.. .....+.+.... .++ .|+.+ |. ..+.+. .+.++.+++++..++....
T Consensus 1949 y~~QQk~p~~~W~~PEqsA-----g~~Ea~~E~aVGG~~~R~Fi~~-P~f~LR~Pk~FL--~~LLek~lelm~~~~peqh 2020 (2235)
T KOG1789|consen 1949 YEQQQKDPTVKWNTPEQSA-----GTSEADKECAVGGSINREFVVG-PGFNLRHPKLFL--TELLEKVLELMSRPTPEQH 2020 (2235)
T ss_pred HHHhccCCcccccCchhhc-----chhhhccCcccchhhhHHHhhC-CCCcccCHHHHH--HHHHHHHHHHhcCCCcccc
Confidence 2211 1111100000000 000001110000 011 11111 11 111121 2667777888876665543
Q ss_pred cccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhh
Q psy12605 557 CQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636 (845)
Q Consensus 557 ~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~ 636 (845)
...-...++-++....+.....+-..|.+|.++.-+...+..+-+.|.++|-.++.+ +-..+.+.....+..++..+.+
T Consensus 2021 ~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK 2099 (2235)
T KOG1789|consen 2021 ELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCTAMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKK 2099 (2235)
T ss_pred hhHHHHHHHHHHHHhCcchhhhCCCccchHHHHHHHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHh
Confidence 322222233344444555556667778899999888888877778899999888764 3344555544444445554421
Q ss_pred hhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHH
Q psy12605 637 RSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716 (845)
Q Consensus 637 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 716 (845)
. +..---|+
T Consensus 2100 ~-----------------------------------------------------------------------~~~~GLA~ 2108 (2235)
T KOG1789|consen 2100 Q-----------------------------------------------------------------------PSLMGLAA 2108 (2235)
T ss_pred c-----------------------------------------------------------------------chHHHHHH
Confidence 0 11222466
Q ss_pred HHHHhhcccCCHHHHHHHHHcCCchHHhhhhcc
Q psy12605 717 WAISNLTISGNRDQVAKLVQEGVIPPFCDLLSC 749 (845)
Q Consensus 717 ~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~ 749 (845)
.++..+......+-....++.|.++.|.++|++
T Consensus 2109 EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2109 EALKRLMKRNTGELVAQMLKCGLVPYLLQLLDS 2141 (2235)
T ss_pred HHHHHHHHHhHHHHHHHHhccCcHHHHHHHhcc
Confidence 677776644455666777789999999999986
|
|
| >KOG1789|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=0.00012 Score=83.15 Aligned_cols=353 Identities=17% Similarity=0.227 Sum_probs=222.4
Q ss_pred HHHHHHHHHHHHHcCCCCcc---HHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH
Q psy12605 61 LQLLAVQSARKLLSSDKNPP---IEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137 (845)
Q Consensus 61 ~~~~a~~~l~~ll~~~~~~~---~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~ 137 (845)
..+.++.+|+++++.+++-. .....--|.++.+..+|....++.++..|+.++..+.. +.+....+++.|.+..|+
T Consensus 1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Ta-n~~Cv~~~a~~~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATA-NKECVTDLATCNVLTTLL 1819 (2235)
T ss_pred HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhc-ccHHHHHHHhhhHHHHHH
Confidence 45678999999998765311 12233347899999999777888999999999988876 478889999999999999
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh-hHHhh
Q psy12605 138 RLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM-STIIE 216 (845)
Q Consensus 138 ~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~ 216 (845)
.+|.+. +..|+.++.+|..+++. ++......+.|++..+..++-..++...|.+++..+..+..+.-..+.. .....
T Consensus 1820 ~lLHS~-PS~R~~vL~vLYAL~S~-~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~k 1897 (2235)
T KOG1789|consen 1820 TLLHSQ-PSMRARVLDVLYALSSN-GQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIK 1897 (2235)
T ss_pred HHHhcC-hHHHHHHHHHHHHHhcC-cHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHH
Confidence 998764 78899999999999954 5677777888999888888877767788999999999998765322211 11112
Q ss_pred HHHH-H-----------Hhhccc--CCchhhHHHH-HHH-hhhChhhHHhhhhhHHHHH---HHHHHHH-----------
Q psy12605 217 LLPA-L-----------NILIHH--HDTSVSIYLW-LSI-IEKNPQISKILVSKMKILV---DTVWALS----------- 266 (845)
Q Consensus 217 ~l~~-L-----------~~ll~~--~~~~~~~~~~-~~l-~~~~~~~~~~~~~~~~~~~---~a~~~L~----------- 266 (845)
.+|. + ++++.. ++|+. .| .+. ...+-.|..-..+.-+-++ .+-|-+-
T Consensus 1898 FLP~~f~d~~RD~PEAaVH~fE~T~EnPEL---iWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~ 1974 (2235)
T KOG1789|consen 1898 FLPEIFADSLRDSPEAAVHMFESTSENPEL---IWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADK 1974 (2235)
T ss_pred hchHHHHHHHhcCHHHHHHHHhccCCCccc---ccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhcc
Confidence 2222 2 233322 22221 00 000 0000000000000000000 0000000
Q ss_pred HhhcCChhhHHHHHhc------------CchhhHHhhccCCch--hhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhH
Q psy12605 267 YLTDGGNDQIQMVIDS------------GVVPSLIPLLSHKEV--KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPA 332 (845)
Q Consensus 267 ~l~~~~~~~~~~~~~~------------g~i~~Lv~lL~~~~~--~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~ 332 (845)
.++-+..-.+..+.+. +.++.+.+++..+++ .....-..++-.+....+.....+-..|.+|.++.
T Consensus 1975 E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGylPK~~~ 2054 (2235)
T KOG1789|consen 1975 ECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGYLPKFCT 2054 (2235)
T ss_pred CcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccchHHHHH
Confidence 0000011111122221 345666666644332 22222233344444555677777778899999999
Q ss_pred hhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHH
Q psy12605 333 LLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVV 411 (845)
Q Consensus 333 lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~ 411 (845)
.+...+..+-..|..+|-.++.+ ..+.+.+.....+..++..++.. +...--|+.++..+.. ...+......
T Consensus 2055 Am~~~n~s~P~SaiRVlH~Lsen-~~C~~AMA~l~~i~~~m~~mkK~------~~~~GLA~EalkR~~~r~~~eLVAQ~L 2127 (2235)
T KOG1789|consen 2055 AMCLQNTSAPRSAIRVLHELSEN-QFCCDAMAQLPCIDGIMKSMKKQ------PSLMGLAAEALKRLMKRNTGELVAQML 2127 (2235)
T ss_pred HHHhcCCcCcHHHHHHHHHHhhc-cHHHHHHhccccchhhHHHHHhc------chHHHHHHHHHHHHHHHhHHHHHHHHh
Confidence 99887777778888999998655 45557777777777788888763 4555678888888764 5566777888
Q ss_pred HcCChHHHHHhhCCC
Q psy12605 412 AAGAVPLFLRLLMSP 426 (845)
Q Consensus 412 ~~g~i~~Lv~lL~~~ 426 (845)
+.|.++.|+++|+..
T Consensus 2128 K~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2128 KCGLVPYLLQLLDSS 2142 (2235)
T ss_pred ccCcHHHHHHHhccc
Confidence 899999999999864
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.3e-06 Score=91.02 Aligned_cols=228 Identities=14% Similarity=0.190 Sum_probs=156.0
Q ss_pred ChhhHHhhhcCC-CCHHHHHHHHHHHHHhhcCCCCCCChhHH------hhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 174 VVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTI------IELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 174 ~i~~Lv~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~------~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
....++.+++.- .+.++.+.+...+..++...+........ ......+.+++.++|.-
T Consensus 56 ~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~--------------- 120 (312)
T PF03224_consen 56 YASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSF--------------- 120 (312)
T ss_dssp ------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHH---------------
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHH---------------
Confidence 355566666554 56789999999999999887543333222 11345566677777777
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC----CchhhHHHHHHHHHHHhcCChhhHHHHh
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH----KEVKVQTASLRAVGNIVTGTDEQTQVIL 322 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~----~~~~v~~~al~~L~nl~~~~~~~~~~i~ 322 (845)
+...++..|..+....+...... ..+.++.++.++.+ ++..++..++.+|.++... +..+..+.
T Consensus 121 ----------i~~~a~~iLt~Ll~~~~~~~~~~-~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~ 188 (312)
T PF03224_consen 121 ----------IQLKAAFILTSLLSQGPKRSEKL-VKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFW 188 (312)
T ss_dssp ----------HHHHHHHHHHHHHTSTTT--HHH-HHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHcCCccccch-HHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHH
Confidence 88889999998887765543332 24667777777754 4556789999999999754 77889999
Q ss_pred cCCccchhhHhh------cC-CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHH
Q psy12605 323 NCDALSHFPALL------TH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA 395 (845)
Q Consensus 323 ~~~~l~~L~~lL------~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~ 395 (845)
+.++++.+..++ .+ .+..+..+++.+++-++. +++..+.+...++++.|+++++.. ....+.+-+..+
T Consensus 189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~----~KEKvvRv~la~ 263 (312)
T PF03224_consen 189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDS----IKEKVVRVSLAI 263 (312)
T ss_dssp THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH------SHHHHHHHHHH
T ss_pred hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhc----ccchHHHHHHHH
Confidence 999999999999 22 357888999999999954 466678888888999999999987 578999999999
Q ss_pred HHHHhcCChH-hHHHHHHcCChHHHHHhhCC--CCHHHHHH
Q psy12605 396 LTNIASGTSA-QTQEVVAAGAVPLFLRLLMS--PHSNVCEQ 433 (845)
Q Consensus 396 L~~l~~~~~~-~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~ 433 (845)
+.|++...+. ....++..|+++.+-.+... +|+++.+.
T Consensus 264 l~Nl~~~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~ed 304 (312)
T PF03224_consen 264 LRNLLSKAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTED 304 (312)
T ss_dssp HHHTTSSSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHH
Confidence 9999986654 67777777777776666654 46666653
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1061|consensus | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00023 Score=79.61 Aligned_cols=381 Identities=13% Similarity=0.136 Sum_probs=228.2
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
-+++++ ......|.+.+...-..+.......++ . ..+.++.++.=. .+.+|.+|..|.+.++.+--+ +..
T Consensus 50 lF~dvv-k~~~T~dlelKKlvyLYl~nYa~~~P~---~---a~~avnt~~kD~-~d~np~iR~lAlrtm~~l~v~--~i~ 119 (734)
T KOG1061|consen 50 LFPDVV-KCMQTRDLELKKLVYLYLMNYAKGKPD---L---AILAVNTFLKDC-EDPNPLIRALALRTMGCLRVD--KIT 119 (734)
T ss_pred hhHHHH-hhcccCCchHHHHHHHHHHHhhccCch---H---HHhhhhhhhccC-CCCCHHHHHHHhhceeeEeeh--HHH
Confidence 366777 677777776665555666655444322 1 123455656555 457889999888877766432 222
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
. ..+.++.+.+++.++.+|..++-+..++-..+ .+...+.|.++.|.+++..+++ .+..+|+.+|..+...
T Consensus 120 e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~---~~~~~~~gl~~~L~~ll~D~~p-~VVAnAlaaL~eI~e~ 190 (734)
T KOG1061|consen 120 E-----YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID---PDLVEDSGLVDALKDLLSDSNP-MVVANALAALSEIHES 190 (734)
T ss_pred H-----HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC---hhhccccchhHHHHHHhcCCCc-hHHHHHHHHHHHHHHh
Confidence 2 26789999999999999999999999987443 4566788999999999985544 7899999999999887
Q ss_pred CCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCc
Q psy12605 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 284 (845)
.............+..+...+...+.. -+...+.++.+-.-.++ .+. ..+
T Consensus 191 ~~~~~~~~l~~~~~~~lL~al~ec~EW-------------------------~qi~IL~~l~~y~p~d~--~ea---~~i 240 (734)
T KOG1061|consen 191 HPSVNLLELNPQLINKLLEALNECTEW-------------------------GQIFILDCLAEYVPKDS--REA---EDI 240 (734)
T ss_pred CCCCCcccccHHHHHHHHHHHHHhhhh-------------------------hHHHHHHHHHhcCCCCc--hhH---HHH
Confidence 743232223334444444444444444 22222233322111111 111 134
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH---
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ--- 361 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~--- 361 (845)
+..+.+.|.+.++.+...+...+..+...-..... ..-...-+.++.++++.. +++--++.-+.-+..+.+....
T Consensus 241 ~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~~~~-~~~~K~~~pl~tlls~~~-e~qyvaLrNi~lil~~~p~~~~~~~ 318 (734)
T KOG1061|consen 241 CERLTPRLQHANSAVVLSAVKVILQLVKYLKQVNE-LLFKKVAPPLVTLLSSES-EIQYVALRNINLILQKRPEILKVEI 318 (734)
T ss_pred HHHhhhhhccCCcceEeehHHHHHHHHHHHHHHHH-HHHHHhcccceeeecccc-hhhHHHHhhHHHHHHhChHHHHhHh
Confidence 66777888888888888888888877654333222 222245566777776654 4443333222222222111100
Q ss_pred ----------------------HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHH
Q psy12605 362 ----------------------AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 419 (845)
Q Consensus 362 ----------------------~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L 419 (845)
.+....-++.++.-+.... ...+.+.-.++.+++++++..-.+. +++++.|
T Consensus 319 ~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYa-tevD~~fvrkaIraig~~aik~e~~------~~cv~~l 391 (734)
T KOG1061|consen 319 KVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYA-TEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSIL 391 (734)
T ss_pred HeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhh-hhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHH
Confidence 0011111222221111110 0136677788999999987643322 6789999
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 420 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 420 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+++++.....+...+...+..+....|..-+. ++..+..-+.+-++.+.+....|.++.-+..-
T Consensus 392 Lell~~~~~yvvqE~~vvi~dilRkyP~~~~~-----vv~~l~~~~~sl~epeak~amiWilg~y~~~i 455 (734)
T KOG1061|consen 392 LELLETKVDYVVQEAIVVIRDILRKYPNKYES-----VVAILCENLDSLQEPEAKAALIWILGEYAERI 455 (734)
T ss_pred HHHHhhcccceeeehhHHHHhhhhcCCCchhh-----hhhhhcccccccCChHHHHHHHHHHhhhhhcc
Confidence 99999888888888888888888766654332 23444444455556788889999998766443
|
|
| >PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=98.53 E-value=2.8e-06 Score=90.25 Aligned_cols=229 Identities=16% Similarity=0.235 Sum_probs=156.5
Q ss_pred hHHHHHhhC--CCChhHHHHHHHHHHHhcCCChhhHHHHHhc------CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 133 VPLFLRLLM--SPHSNVCEQAVWALGNIIGDGPQLRDYVINM------GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 133 i~~L~~lL~--s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~------g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
...++.+|+ ++++++....+..+..+..+++...+.+... ....++++++.++ +..+...|+.+|..+...
T Consensus 57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~-D~~i~~~a~~iLt~Ll~~ 135 (312)
T PF03224_consen 57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRN-DSFIQLKAAFILTSLLSQ 135 (312)
T ss_dssp -----HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S-SHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCC-CHHHHHHHHHHHHHHHHc
Confidence 445555554 4688999999999999998888777666542 2577888877776 778999999999999987
Q ss_pred CCCCCChhHHhhHHHHHHhhccc----CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHH
Q psy12605 205 KDPPPSMSTIIELLPALNILIHH----HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVI 280 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 280 (845)
.+..... ...+.++.++..+.+ .+.+ .+..++.+|..+.. .+..+..+.
T Consensus 136 ~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~-------------------------~~~~av~~L~~LL~-~~~~R~~f~ 188 (312)
T PF03224_consen 136 GPKRSEK-LVKEALPKLLQWLSSQLSSSDSE-------------------------LQYIAVQCLQNLLR-SKEYRQVFW 188 (312)
T ss_dssp TTT--HH-HHHHHHHHHHHHHH-TT-HHHH----------------------------HHHHHHHHHHHT-SHHHHHHHH
T ss_pred CCccccc-hHHHHHHHHHHHHHHhhcCCCcc-------------------------hHHHHHHHHHHHhC-cchhHHHHH
Confidence 7443332 225666777776654 2222 56778888998875 455677888
Q ss_pred hcCchhhHHhhc-----c--CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHh
Q psy12605 281 DSGVVPSLIPLL-----S--HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNI 352 (845)
Q Consensus 281 ~~g~i~~Lv~lL-----~--~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl 352 (845)
+.++++.+...+ . ..+..++..++-|+.-++.. +.....+.+.+.++.++++++. ..+.+.+-++.++.|+
T Consensus 189 ~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~-~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl 267 (312)
T PF03224_consen 189 KSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFE-PEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNL 267 (312)
T ss_dssp THHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHT
T ss_pred hcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcC-HHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence 999999999999 2 23567888999999999766 5666778888899999999954 6789999999999999
Q ss_pred hcCChH-HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHH
Q psy12605 353 TAGNQA-QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAA 393 (845)
Q Consensus 353 ~~~~~~-~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~ 393 (845)
.....+ ....++..++++.+-.+..... .|+++....-
T Consensus 268 ~~~~~~~~~~~mv~~~~l~~l~~L~~rk~---~Dedl~edl~ 306 (312)
T PF03224_consen 268 LSKAPKSNIELMVLCGLLKTLQNLSERKW---SDEDLTEDLE 306 (312)
T ss_dssp TSSSSTTHHHHHHHH-HHHHHHHHHSS-----SSHHHHHHHH
T ss_pred HhccHHHHHHHHHHccHHHHHHHHhcCCC---CCHHHHHHHH
Confidence 877664 6677777777666665555443 4666655443
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG1059|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=0.00018 Score=79.21 Aligned_cols=337 Identities=14% Similarity=0.163 Sum_probs=170.4
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i 169 (845)
.+-++.+| ++.-|-+|..|..+|..+.-..++..+. ++|.|..-|.++|+.++.+|+.+++.||..+|.+--.
T Consensus 146 a~Dv~tLL-~sskpYvRKkAIl~lykvFLkYPeAlr~-----~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~- 218 (877)
T KOG1059|consen 146 ADDVFTLL-NSSKPYVRKKAILLLYKVFLKYPEALRP-----CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQ- 218 (877)
T ss_pred HHHHHHHH-hcCchHHHHHHHHHHHHHHHhhhHhHhh-----hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCccccc-
Confidence 44445555 2344555555555555555443333222 4555555555566666666666666655554432111
Q ss_pred HhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHH
Q psy12605 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISK 249 (845)
Q Consensus 170 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~ 249 (845)
.-|.+..++...++.-+....+..+.+|.--. | ......++.|..++++...-
T Consensus 219 ----LAP~ffkllttSsNNWmLIKiiKLF~aLtplE-P----RLgKKLieplt~li~sT~Am------------------ 271 (877)
T KOG1059|consen 219 ----LAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE-P----RLGKKLIEPITELMESTVAM------------------ 271 (877)
T ss_pred ----ccHHHHHHHhccCCCeehHHHHHHHhhccccC-c----hhhhhhhhHHHHHHHhhHHH------------------
Confidence 22344444443333344444444444444322 0 12234455555554443221
Q ss_pred hhhhhHHHHHHHHHHHH--HhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 250 ILVSKMKILVDTVWALS--YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 250 ~~~~~~~~~~~a~~~L~--~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
-+...+..++. +++.+.++.-..+ .-.++.|-.++.+.++.++.-++-+++.+...++...+. .-
T Consensus 272 ------SLlYECvNTVVa~s~s~g~~d~~asi--qLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa-----~k 338 (877)
T KOG1059|consen 272 ------SLLYECVNTVVAVSMSSGMSDHSASI--QLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQA-----HK 338 (877)
T ss_pred ------HHHHHHHHHheeehhccCCCCcHHHH--HHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHH-----hH
Confidence 13333333332 2222222211111 123667777888899999999999999998766553332 34
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT 407 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (845)
+.++++|++.|+.+|-.|+..|..++.. ++... ++..|+..+... +....+-+.+.-+..+|+.+.-
T Consensus 339 dlIlrcL~DkD~SIRlrALdLl~gmVsk--kNl~e-----IVk~LM~~~~~a----e~t~yrdell~~II~iCS~snY-- 405 (877)
T KOG1059|consen 339 DLILRCLDDKDESIRLRALDLLYGMVSK--KNLME-----IVKTLMKHVEKA----EGTNYRDELLTRIISICSQSNY-- 405 (877)
T ss_pred HHHHHHhccCCchhHHHHHHHHHHHhhh--hhHHH-----HHHHHHHHHHhc----cchhHHHHHHHHHHHHhhhhhh--
Confidence 6789999999999999999988877432 22221 344555555443 3446777777777777764421
Q ss_pred HHHHHcC-ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHh--cc-----CCCCChhHHHHHHH
Q psy12605 408 QEVVAAG-AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS--FI-----KPDIPISFLRNVTW 479 (845)
Q Consensus 408 ~~l~~~g-~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~--ll-----~~~~~~~~~~~~~~ 479 (845)
..+.+-. .+..++++..-+....=.....-+-.++..-+..|...... +..|+. ++ .+..-.+++..++|
T Consensus 406 ~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~--m~~Ll~~~~~~~s~q~n~~l~eVL~AaaW 483 (877)
T KOG1059|consen 406 QYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQ--MSALLDDPLLAGSAQINSQLCEVLYAAAW 483 (877)
T ss_pred hhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHH--HHHHHhchhhccchhhccchhHHHHHHHH
Confidence 1122211 13445555443332222222223333333333333322111 111111 11 11222578899999
Q ss_pred HHHHhhcCC
Q psy12605 480 VIVNLCRNK 488 (845)
Q Consensus 480 ~l~nL~~~~ 488 (845)
+++..+...
T Consensus 484 i~GEyse~v 492 (877)
T KOG1059|consen 484 ILGEYSEFV 492 (877)
T ss_pred HHHHHHHHh
Confidence 999887544
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00021 Score=80.98 Aligned_cols=408 Identities=13% Similarity=0.135 Sum_probs=243.4
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCcc--HHHHHhcCCHHHHHHhhccC------CChhHHHHHHHHHHHH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPP--IEALIHSGILPVLVECLERS------DRPNLQFEAAWALTNI 116 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~--~~~i~~~g~i~~Lv~lL~~~------~~~~i~~~a~~~L~~l 116 (845)
.+++-+ .+|++.+.+.++.++.-+.+++..++... .+.+.++=+.+-|-.+|++. +....+..|+.+|+.+
T Consensus 6 ~l~~c~-~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 6 SLEKCL-SLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHH-HHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 456667 89999998889999999999988654211 23466776677888888542 2346788899999999
Q ss_pred hcCChhhH--HHHHHcCChHHHHHhhCCCCh-hHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHH
Q psy12605 117 ASGTSAQT--QEVVAAGAVPLFLRLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRN 193 (845)
Q Consensus 117 a~~~~~~~--~~i~~~g~i~~L~~lL~s~~~-~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 193 (845)
|. .++.+ ..++ +-||.|+..+.+++. .+...|+.+|..++ ..++.++.+++.|+++.|++.+.+.. .....
T Consensus 85 ~~-~~~~a~~~~~~--~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~~--~~~E~ 158 (543)
T PF05536_consen 85 CR-DPELASSPQMV--SRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQS--FQMEI 158 (543)
T ss_pred cC-ChhhhcCHHHH--HHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhCc--chHHH
Confidence 97 45554 3344 489999999988877 99999999999999 66889999999999999999987742 46778
Q ss_pred HHHHHHHhhcCCCCCC---ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 194 VTWVIVNLCRNKDPPP---SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 194 a~~~L~~l~~~~~~~~---~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
|..++.+++....... ........++.+...+...... .+...+..|..+-.
T Consensus 159 Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~-------------------------~kfell~~L~~~L~ 213 (543)
T PF05536_consen 159 ALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGE-------------------------DKFELLEFLSAFLP 213 (543)
T ss_pred HHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccc-------------------------hHHHHHHHHHHhcC
Confidence 8888888877553111 1122234445555444433222 34455666655543
Q ss_pred CChhh-HHHHHhcCch----hhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcC-----CccchhhHhh-----
Q psy12605 271 GGNDQ-IQMVIDSGVV----PSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNC-----DALSHFPALL----- 334 (845)
Q Consensus 271 ~~~~~-~~~~~~~g~i----~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~-----~~l~~L~~lL----- 334 (845)
..+.. .......... .-+..+|.+ ..+.-|.+++.+.+.+...-+. .-.+.+. .++-.++++.
T Consensus 214 ~~~~~~~~~~~~~~W~~~l~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G~-~wl~~~~~~~~~~F~~Llv~l~~VEir 292 (543)
T PF05536_consen 214 RSPILPLESPPSPKWLSDLRKGLRDILQSRLTPSQRDPALNLAASLLDLLGP-EWLFADDKKSGKKFLLLLVNLACVEIR 292 (543)
T ss_pred cCCccccccCChhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCh-HhhcCCCCCCcccHHHHHHHHHHHHHH
Confidence 33110 1111122223 333344433 3556677777776666532110 0001111 1222222221
Q ss_pred ----------cCCch---hhHHHHHH-H----HHHhhc--------CChHHHHHHHh--cCChHHHHHHhhhccc-ccCC
Q psy12605 335 ----------THPKE---KICKEAVW-F----LSNITA--------GNQAQVQAVID--AGLLPKIIANLQKVGR-IVLR 385 (845)
Q Consensus 335 ----------~~~~~---~~~~~a~~-~----L~nl~~--------~~~~~~~~l~~--~~~i~~Lv~lL~~~~~-~~~~ 385 (845)
+.+.. .-+-.+|. + +..++. -.++...++.. .+.+..++++|++..+ ...+
T Consensus 293 ~~L~~L~~~~~~~~~~~~~~~L~~cf~ilE~~I~~l~~~~~~~~~~~~~~~l~kl~~~l~e~~~~vle~L~~~~d~~~~d 372 (543)
T PF05536_consen 293 MSLEELLEQLNPEEYPEKQRLLASCFSILEHFIGYLVRSLEEESLDLDPDTLLKLRTSLSETFSAVLEYLRDVWDESQKD 372 (543)
T ss_pred HHhHHhhhcCCchhhHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 11110 01111221 1 112222 02233333332 4567778888876542 1133
Q ss_pred hhHHHHHHHHHHHHhcCCh-HhHHHHHHcCChHHHHHhhCCCCH----------HHHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 386 PNLQFEAAWALTNIASGTS-AQTQEVVAAGAVPLFLRLLMSPHS----------NVCEQAVWALGNIIGDGPQLRDYVIN 454 (845)
Q Consensus 386 ~~v~~~a~~~L~~l~~~~~-~~~~~l~~~g~i~~Lv~lL~~~~~----------~v~~~a~~~L~nl~~~~~~~~~~l~~ 454 (845)
+..-..+.++|+.....++ ..++.+ .|.++.++.+...+.. +.+...+-+|+.++.. +..|+.+..
T Consensus 373 ~~~vlAsvR~L~~WLaEe~~~lr~~v--~~Ll~~ll~~~~~~~~~~~~~~~~~~d~~r~lLPaL~~lt~e-~~gr~~l~~ 449 (543)
T PF05536_consen 373 PDFVLASVRVLGAWLAEETSALRKEV--YGLLPFLLSLYRESFQEAEPAREGPLDFLRFLLPALCHLTAE-EEGRKILLS 449 (543)
T ss_pred hHHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHhhhhhhcccccccchhHHHHHHHHHhhhhcc-HHHHHHHHh
Confidence 4477778888888665444 445555 4889999999886533 4566677777777764 567889999
Q ss_pred CCChHHHHhccC----CCC---C----h-hHHHHHHHHHHHhhcCC
Q psy12605 455 MGVVPPLLSFIK----PDI---P----I-SFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 455 ~g~l~~L~~ll~----~~~---~----~-~~~~~~~~~l~nL~~~~ 488 (845)
.|+.+.+.+.+- ... + . .-...+|.++.|+.-..
T Consensus 450 ~~g~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~c~illNl~~~e 495 (543)
T PF05536_consen 450 NGGWKLLCDDLLKILQSPSGDDDAEDSAEMALVTACGILLNLVVTE 495 (543)
T ss_pred CCcHHHHHHHHHHHHHhcccCcchhhhhHHHHHHHHHHHHHHHhcc
Confidence 999877775542 211 0 1 13456778888887655
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=91.49 Aligned_cols=268 Identities=20% Similarity=0.204 Sum_probs=196.1
Q ss_pred HHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhh
Q psy12605 61 LQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 140 (845)
Q Consensus 61 ~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL 140 (845)
.|+.|.+.-...-+..++++-+ +|..++.|- + +--|..|+..|+.+-.-.+-....-..-|+.|+.++||
T Consensus 452 eQLTAFevWLd~gse~r~PPeQ-------LPiVLQVLL-S--QvHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLL 521 (1387)
T KOG1517|consen 452 EQLTAFEVWLDYGSESRTPPEQ-------LPIVLQVLL-S--QVHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLL 521 (1387)
T ss_pred HHHHHHHHHHHhccccCCChHh-------cchHHHHHH-H--HHHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHh
Confidence 4444544444443333333322 666777773 2 23477888999988776677777777889999999999
Q ss_pred CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCC--CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHH
Q psy12605 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD--IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL 218 (845)
Q Consensus 141 ~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 218 (845)
+++..+++-.-+.+...|-.-++.++..+++.++-..+++.|..+ .+.+-+..|+.+|+.++++....++.....+.+
T Consensus 522 QS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li 601 (1387)
T KOG1517|consen 522 QSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLI 601 (1387)
T ss_pred ccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHH
Confidence 999999999999999988877788998899887788888888762 245778889999999999886666666666777
Q ss_pred HHHHhhcccC-CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCch
Q psy12605 219 PALNILIHHH-DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297 (845)
Q Consensus 219 ~~L~~ll~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~ 297 (845)
..-...+.++ .+- .++-+|-+|..|-+...+.+-.-++.++.+.|..+|.++-+
T Consensus 602 ~iCle~lnd~~~pL-------------------------LrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vp 656 (1387)
T KOG1517|consen 602 GICLEHLNDDPEPL-------------------------LRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVP 656 (1387)
T ss_pred HHHHHHhcCCccHH-------------------------HHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccH
Confidence 7666666664 333 77888888988877666655555677899999999999999
Q ss_pred hhHHHHHHHHHHHhcCC----hhhHHHH------------hcCCcc---chhhHhhcCCchhhHHHHHHHHHHhhcCChH
Q psy12605 298 KVQTASLRAVGNIVTGT----DEQTQVI------------LNCDAL---SHFPALLTHPKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 298 ~v~~~al~~L~nl~~~~----~~~~~~i------------~~~~~l---~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
+|+.+|+-+|+.+.... ++....+ ++.-.. ..++.++++..+-+|.+..-+|+.++.+...
T Consensus 657 EVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~ 736 (1387)
T KOG1517|consen 657 EVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVS 736 (1387)
T ss_pred HHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHH
Confidence 99999999999998642 2222211 121112 3566777888888999888888888776655
Q ss_pred HHHHH
Q psy12605 359 QVQAV 363 (845)
Q Consensus 359 ~~~~l 363 (845)
....+
T Consensus 737 ~~~~v 741 (1387)
T KOG1517|consen 737 HLKVV 741 (1387)
T ss_pred HhHHH
Confidence 54433
|
|
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00059 Score=74.82 Aligned_cols=264 Identities=16% Similarity=0.113 Sum_probs=164.6
Q ss_pred ChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 132 AVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
..|-.-+.|++. +..+++..+-..+.++.+-......+. .++..+..-+..+ ..++++....+|..+.-....
T Consensus 56 l~~~~~~~l~~~~~~~~~~~~~v~~~~~a~~~~~~d~~~~--~~~~~~~~~~~tp-s~~~q~~~~~~l~~~~~~~~~--- 129 (569)
T KOG1242|consen 56 LKPCFEQRLNSLHNDNLRNNVVVLEGTLAFHLQIVDPRPI--SIIEILLEELDTP-SKSVQRAVSTCLPPLVVLSKG--- 129 (569)
T ss_pred HHHHHHHHhccchhHHHhhhhHHHHHHHHHhccccCcchh--HHHHHHHHhcCCC-cHHHHHHHHHHhhhHHHHhhc---
Confidence 344444555543 455666666666666655432221111 1355566666655 457888888888776654322
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHh
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 290 (845)
.....+.+.+.+++...+.. .+..+.+.++.+..+.. +..+.+.+++..+..
T Consensus 130 -~~~~~~l~~l~~ll~~~~~~-------------------------~~~~aa~~~ag~v~g~~--i~~~~~~~~l~~l~~ 181 (569)
T KOG1242|consen 130 -LSGEYVLELLLELLTSTKIA-------------------------ERAGAAYGLAGLVNGLG--IESLKEFGFLDNLSK 181 (569)
T ss_pred -cCHHHHHHHHHHHhccccHH-------------------------HHhhhhHHHHHHHcCcH--HhhhhhhhHHHHHHH
Confidence 12456677777777766665 67778888888776533 455667788888988
Q ss_pred hccCCchhhHHH-HHHHHHHHhcCChhhHHHHhcCC---ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy12605 291 LLSHKEVKVQTA-SLRAVGNIVTGTDEQTQVILNCD---ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 366 (845)
Q Consensus 291 lL~~~~~~v~~~-al~~L~nl~~~~~~~~~~i~~~~---~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~ 366 (845)
.+.+.+...+.. ++-+.-..+..-. ...+.. .+|.++....+..+.+|..|..+...+....+... -.
T Consensus 182 ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~a----VK 253 (569)
T KOG1242|consen 182 AIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYA----VK 253 (569)
T ss_pred HhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcch----hh
Confidence 887766554443 2222222221111 111222 44555555567788899888777776644433221 12
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
.++|.++.-+... .++.+..++..++.++...+.. -...-...+|.+.+.|.+.+++++.++..++.+++.
T Consensus 254 ~llpsll~~l~~~-----kWrtK~aslellg~m~~~ap~q-Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~s 324 (569)
T KOG1242|consen 254 LLLPSLLGSLLEA-----KWRTKMASLELLGAMADCAPKQ-LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGS 324 (569)
T ss_pred HhhhhhHHHHHHH-----hhhhHHHHHHHHHHHHHhchHH-HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHH
Confidence 2455665555552 6788999999999887766543 345566899999999999999999999999998875
|
|
| >PF01749 IBB: Importin beta binding domain; InterPro: IPR002652 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane | Back alignment and domain information |
|---|
Probab=98.39 E-value=8.9e-08 Score=81.04 Aligned_cols=66 Identities=48% Similarity=0.692 Sum_probs=45.6
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCCCCCChh---hHH-----HHhhhcHHHHHHHHHcCCChHHHHHHHH
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDED---DIE-----KMAQVNLDMLVVEAARKDNPELQLLAVQ 67 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~~~~~~~---~~~-----~~~~~~i~~lv~~~l~~~~~~~~~~a~~ 67 (845)
||+||++..++|||+||+|.|.|||++......... ... .-....++.+| ..+.|+|+..++.|+.
T Consensus 23 ~RrrRee~~veLRK~KReE~l~KRRn~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~v-~~v~S~d~~~ql~Atq 96 (97)
T PF01749_consen 23 MRRRREEEQVELRKQKREEQLQKRRNINMADEESSSEESESDQNSSAQQLNEELPEMV-AGVNSDDPEVQLEATQ 96 (97)
T ss_dssp HHHHCCCCHHHHCHHHHHCCHSCCHT-----------------TCCCCS--HHHHHHH-HHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccccccccccccccccccccccccHHHH-HhcCCCCHHHHHHhhC
Confidence 699999999999999999999999999654322111 111 11345677888 8999999999999875
|
Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. Members of the importin-alpha (karyopherin-alpha) family can form heterodimers with importin-beta. As part of a heterodimer, importin-beta mediates interactions with the pore complex, while importin-alpha acts as an adaptor protein to bind the nuclear localisation signal (NLS) on the cargo through the classical NLS import of proteins. Proteins can contain one (monopartite) or two (bipartite) NLS motifs. Importin-alpha contains several armadillo (ARM) repeats, which produce a curving structure with two NLS-binding sites, a major one close to the N terminus and a minor one close to the C terminus. Ran GTPase helps to control the unidirectional transfer of cargo. The cytoplasm contains primarily RanGDP and the nucleus RanGTP through the actions of RanGAP and RanGEF, respectively. In the nucleus, RanGTP binds to importin-beta within the importin/cargo complex, causing a conformational change in importin-beta that releases it from importin-alpha-bound cargo. The N-terminal importin-beta-binding (IBB) domain of importin-alpha contains an auto-regulatory region that mimics the NLS motif []. The release of importin-beta frees the auto-regulatory region on importin-alpha to loop back and bind to the major NLS-binding site, causing the cargo to be released []. This entry represents the N-terminal IBB domain of importin-alpha that contains the auto-regulatory region. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0008565 protein transporter activity, 0006606 protein import into nucleus, 0006886 intracellular protein transport, 0005634 nucleus, 0005737 cytoplasm; PDB: 1BK5_B 1UN0_A 1WA5_B 2C1T_A 1EE4_A 1BK6_A 1EE5_A 3TJ3_A 2JDQ_A 3FEY_C .... |
| >KOG4413|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=2.7e-05 Score=77.60 Aligned_cols=338 Identities=15% Similarity=0.169 Sum_probs=217.3
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChh--h--HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE--Q--TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~--~--~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
.+.|-.-|..++..|+.-++..++.+..+.+. . ...+++++.++.++.++...+.++.+.|...+..++.. +...
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialf-paal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALF-PAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhc-HHHH
Confidence 34455555678889999999999999877662 2 24455889999999999999999999999999999554 5555
Q ss_pred HHHHhcCChHHH--HHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKI--IANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWA 437 (845)
Q Consensus 361 ~~l~~~~~i~~L--v~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~ 437 (845)
..+++++....+ ..+-.. .++-++......+..+.+-+++.......+|.+..|..-+.. .+.-|+..++..
T Consensus 163 eaiFeSellDdlhlrnlaak-----cndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciEl 237 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAK-----CNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIEL 237 (524)
T ss_pred HHhcccccCChHHHhHHHhh-----hhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHH
Confidence 777777766554 233233 256677788888899999999999999999999999988887 666788888888
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhH--HHHHH---HHHHHhhcCC-CCCCChhHHHhHHHHHHHhhcCC
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISF--LRNVT---WVIVNLCRNK-DPPPSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~--~~~~~---~~l~nL~~~~-~~~~~~~~~~~~l~~l~~ll~~~ 511 (845)
...++... ..|+.+-+.|.++.+..++...++..+ .|... ..+++..-.. .+....+...-++.....++..+
T Consensus 238 vteLaete-HgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmn 316 (524)
T KOG4413|consen 238 VTELAETE-HGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMN 316 (524)
T ss_pred HHHHHHHh-hhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcC
Confidence 88887642 357788899999999999975544332 33222 2333333222 11111122222333444566678
Q ss_pred ChhHHHHHH--HHhhhcCchhhHHHHhh-hhhhHHHHhhhccCCCCcccccccccccccccC-----------CChh--h
Q psy12605 512 DTSVSIYLW--LSIIEKNPQISKILVSK-MKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP-----------GTDE--Q 575 (845)
Q Consensus 512 d~~v~~~~~--l~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~-----------~~~~--~ 575 (845)
|++....+. +..|.++......+... ....+.++.-..+.+.+.. +.+++.++.+|+. |..+ .
T Consensus 317 DpdaieaAiDalGilGSnteGadlllkTgppaaehllarafdqnahak-qeaaihaLaaIagelrlkpeqitDgkaeerl 395 (524)
T KOG4413|consen 317 DPDAIEAAIDALGILGSNTEGADLLLKTGPPAAEHLLARAFDQNAHAK-QEAAIHALAAIAGELRLKPEQITDGKAEERL 395 (524)
T ss_pred CchHHHHHHHHHHhccCCcchhHHHhccCChHHHHHHHHHhcccccch-HHHHHHHHHHhhccccCChhhccccHHHHHH
Confidence 888777655 66666555443333222 2245555554444443322 2234555555532 1111 1
Q ss_pred HHHHHh-------CCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHH
Q psy12605 576 TQVILN-------CDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630 (845)
Q Consensus 576 ~~~l~~-------~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L 630 (845)
+..+.+ .+-+..+..+++.|.|+++..+..++..+++..=.....+-..+++..+
T Consensus 396 rclifdaaaqstkldPleLFlgilqQpfpEihcAalktfTAiaaqPWalkeifakeefieiV 457 (524)
T KOG4413|consen 396 RCLIFDAAAQSTKLDPLELFLGILQQPFPEIHCAALKTFTAIAAQPWALKEIFAKEEFIEIV 457 (524)
T ss_pred HHHHHHHHhhccCCChHHHHHHHHcCCChhhHHHHHHHHHHHHcCcHHHHHHhcCccceeee
Confidence 111111 1334566777888999999999999999987654444444455555444
|
|
| >KOG3678|consensus | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-05 Score=79.48 Aligned_cols=241 Identities=16% Similarity=0.253 Sum_probs=152.6
Q ss_pred HHHHHHcCChHHHHHhhCCCCHH--HHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHh
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSN--VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 484 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~--v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL 484 (845)
+..+...|+++.|++++..++-+ |+..|...|..+... +.++.+.+-| +..++.+-+...+.+..+..+..+.+|
T Consensus 173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~m 249 (832)
T KOG3678|consen 173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHM 249 (832)
T ss_pred hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHH
Confidence 44566779999999999998765 588999999888653 4566666655 455555555555556666666666665
Q ss_pred hcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccc
Q psy12605 485 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSI 564 (845)
Q Consensus 485 ~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~ 564 (845)
+.+.
T Consensus 250 FKHS---------------------------------------------------------------------------- 253 (832)
T KOG3678|consen 250 FKHS---------------------------------------------------------------------------- 253 (832)
T ss_pred hhhh----------------------------------------------------------------------------
Confidence 5443
Q ss_pred cccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccC-CHHHHHHHHHCCChHHHHHHhhhhhhhhhh
Q psy12605 565 YMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKRSCKILN 643 (845)
Q Consensus 565 l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~-~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~ 643 (845)
++.++.++..|+++++..+....+|.+.+.|+.+|+|++-. .+...+.+++..+-.-|+-+.
T Consensus 254 --------eet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA--------- 316 (832)
T KOG3678|consen 254 --------EETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLA--------- 316 (832)
T ss_pred --------HHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhh---------
Confidence 23346788889999999999999999999999999999854 334444555544333222111
Q ss_pred hcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhc
Q psy12605 644 KYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT 723 (845)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~ 723 (845)
.+.|.-+|..||.+++.++
T Consensus 317 -------------------------------------------------------------~skDel~R~~AClAV~vla 335 (832)
T KOG3678|consen 317 -------------------------------------------------------------FSKDELLRLHACLAVAVLA 335 (832)
T ss_pred -------------------------------------------------------------cchHHHHHHHHHHHHhhhh
Confidence 2335556667777777776
Q ss_pred ccCCHHHHHHHH-HcC---CchHHh----------------------------hhhccccHHHHHHHHHHHHHHHHhhHH
Q psy12605 724 ISGNRDQVAKLV-QEG---VIPPFC----------------------------DLLSCKDAQVIQVVLDGINNMLKMADA 771 (845)
Q Consensus 724 ~~~~~~~~~~l~-~~~---~i~~L~----------------------------~~L~~~d~~~~~~al~~L~~l~~~~~~ 771 (845)
+.+.....+ +.| .+++|+ -+|++.--+. .++.+.+-.++..-+
T Consensus 336 ---t~KE~E~~VrkS~TlaLVEPlva~~DP~~FARD~hd~aQG~~~d~LqRLvPlLdS~R~EA--q~i~AF~l~~EAaIK 410 (832)
T KOG3678|consen 336 ---TNKEVEREVRKSGTLALVEPLVASLDPGRFARDAHDYAQGRGPDDLQRLVPLLDSNRLEA--QCIGAFYLCAEAAIK 410 (832)
T ss_pred ---hhhhhhHHHhhccchhhhhhhhhccCcchhhhhhhhhhccCChHHHHHhhhhhhcchhhh--hhhHHHHHHHHHHHH
Confidence 222222232 222 333333 3444322222 333444444433333
Q ss_pred HHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHH
Q psy12605 772 QVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIE 809 (845)
Q Consensus 772 ~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~ 809 (845)
..+.-.++|.+.|++..|..+.+++++--.+.|.+.|.
T Consensus 411 s~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALt 448 (832)
T KOG3678|consen 411 SLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALT 448 (832)
T ss_pred HhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 33334678999999999999999888866666766665
|
|
| >KOG1061|consensus | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0013 Score=73.89 Aligned_cols=377 Identities=18% Similarity=0.233 Sum_probs=225.2
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcC
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAG 131 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g 131 (845)
..+.+.-+..+..|++.......-+.+ -+++.|-++.... ..+-+.+...-.-|.+.+...++... +
T Consensus 20 s~l~s~~~~kr~~a~kkvIa~Mt~G~D-------vSslF~dvvk~~~-T~dlelKKlvyLYl~nYa~~~P~~a~-----~ 86 (734)
T KOG1061|consen 20 SQLNSQSKEKRKDAVKKVIAYMTVGKD-------VSSLFPDVVKCMQ-TRDLELKKLVYLYLMNYAKGKPDLAI-----L 86 (734)
T ss_pred HHhhhhhhhhHHHHHHHHHhcCccCcc-------hHhhhHHHHhhcc-cCCchHHHHHHHHHHHhhccCchHHH-----h
Confidence 455555556677776666554444433 1456888899985 45578888888888898887665443 5
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
++..+++=..++++.+|..|++.++.+-.+ ...+. .+.++.+.++...+ -+|+.++-+..++-..+ .+.
T Consensus 87 avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~ey-----~~~Pl~~~l~d~~~-yvRktaa~~vakl~~~~---~~~ 155 (734)
T KOG1061|consen 87 AVNTFLKDCEDPNPLIRALALRTMGCLRVD--KITEY-----LCDPLLKCLKDDDP-YVRKTAAVCVAKLFDID---PDL 155 (734)
T ss_pred hhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHHHH-----HHHHHHHhccCCCh-hHHHHHHHHHHHhhcCC---hhh
Confidence 788899999999999999999999988633 23222 36788888887744 68888888888877654 445
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhh
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 291 (845)
....|.++.|..++.+.++. +...|+.+|..+.+.+.+.-........+..++..
T Consensus 156 ~~~~gl~~~L~~ll~D~~p~-------------------------VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~a 210 (734)
T KOG1061|consen 156 VEDSGLVDALKDLLSDSNPM-------------------------VVANALAALSEIHESHPSVNLLELNPQLINKLLEA 210 (734)
T ss_pred ccccchhHHHHHHhcCCCch-------------------------HHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHH
Confidence 56789999999999988888 99999999998887655311111122334455555
Q ss_pred ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHH
Q psy12605 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPK 371 (845)
Q Consensus 292 L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 371 (845)
+..-++--+...+.++.+-...++.... .++..+...|.+.+..+...+...+.++...... .....-...-++
T Consensus 211 l~ec~EW~qi~IL~~l~~y~p~d~~ea~-----~i~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~p 284 (734)
T KOG1061|consen 211 LNECTEWGQIFILDCLAEYVPKDSREAE-----DICERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPP 284 (734)
T ss_pred HHHhhhhhHHHHHHHHHhcCCCCchhHH-----HHHHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhccc
Confidence 5555555666677777766544332222 2345566667777777777777777766444333 222333455667
Q ss_pred HHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12605 372 IIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 451 (845)
Q Consensus 372 Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 451 (845)
++.++... ++++..+..=+.-+....++..+. ..--.++++ .+...++..=+.++..++.... ..+
T Consensus 285 l~tlls~~------~e~qyvaLrNi~lil~~~p~~~~~----~~~~Ff~ky--nDPiYvK~eKleil~~la~~~n-l~q- 350 (734)
T KOG1061|consen 285 LVTLLSSE------SEIQYVALRNINLILQKRPEILKV----EIKVFFCKY--NDPIYVKLEKLEILIELANDAN-LAQ- 350 (734)
T ss_pred ceeeeccc------chhhHHHHhhHHHHHHhChHHHHh----HhHeeeeec--CCchhhHHHHHHHHHHHhhHhH-HHH-
Confidence 77776653 366666555444444444332110 000001111 1122344444445544443221 111
Q ss_pred HHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhc
Q psy12605 452 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 509 (845)
Q Consensus 452 l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~ 509 (845)
++..+... ..+.+.++.+.+++++++++.-.. ...+++..|..++.
T Consensus 351 -----vl~El~eY-atevD~~fvrkaIraig~~aik~e------~~~~cv~~lLell~ 396 (734)
T KOG1061|consen 351 -----VLAELKEY-ATEVDVDFVRKAVRAIGRLAIKAE------QSNDCVSILLELLE 396 (734)
T ss_pred -----HHHHHHHh-hhhhCHHHHHHHHHHhhhhhhhhh------hhhhhHHHHHHHHh
Confidence 11111111 133446777888888888875442 11455555555555
|
|
| >PF05536 Neurochondrin: Neurochondrin | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.0019 Score=73.32 Aligned_cols=236 Identities=15% Similarity=0.196 Sum_probs=160.1
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh---hHHHHHhcCChhhHHhhhcCC------CCHHHHHHHHHHHHHhh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPD------IPISFLRNVTWVIVNLC 202 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~---~r~~i~~~g~i~~Lv~ll~~~------~~~~~~~~a~~~L~~l~ 202 (845)
.+..-+.+|++.+.+-+-.++-.+.++...++. .++.+.+.=+.+-+-++|+.. .+...+.-|+.+|+.+|
T Consensus 6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~ 85 (543)
T PF05536_consen 6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC 85 (543)
T ss_pred HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence 455667788888877777788888888866553 344577765577777888652 24678888999999999
Q ss_pred cCCCCCCChhHHhhHHHHHHhhcccCCc-hhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 203 RNKDPPPSMSTIIELLPALNILIHHHDT-SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
..++. .......+.+|.|+..+...+. . +..+++.+|..++. .++..+.+++
T Consensus 86 ~~~~~-a~~~~~~~~IP~Lle~l~~~s~~~-------------------------~v~dalqcL~~Ias-~~~G~~aLl~ 138 (543)
T PF05536_consen 86 RDPEL-ASSPQMVSRIPLLLEILSSSSDLE-------------------------TVDDALQCLLAIAS-SPEGAKALLE 138 (543)
T ss_pred CChhh-hcCHHHHHHHHHHHHHHHcCCchh-------------------------HHHHHHHHHHHHHc-CcHhHHHHHh
Confidence 96533 2335577899999999987666 6 88999999999994 4555677889
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh-----HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCC
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ-----TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGN 356 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~-----~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 356 (845)
.|.++.|++.+.+ .+.....|+.+|.+++...+.. .+.+ ..+++.+-..+.......+-+.+..|..+....
T Consensus 139 ~g~v~~L~ei~~~-~~~~~E~Al~lL~~Lls~~~~~~~~~~~~~l--~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 139 SGAVPALCEIIPN-QSFQMEIALNLLLNLLSRLGQKSWAEDSQLL--HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred cCCHHHHHHHHHh-CcchHHHHHHHHHHHHHhcchhhhhhhHHHH--HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 9999999999977 6667889999999987654311 1111 134455666666666777888899999886655
Q ss_pred hHH-HHHHHh----cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc
Q psy12605 357 QAQ-VQAVID----AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401 (845)
Q Consensus 357 ~~~-~~~l~~----~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~ 401 (845)
+.. ....-. ..+...+-.++.+. ..+.-|..+......+..
T Consensus 216 ~~~~~~~~~~~~W~~~l~~gl~~iL~sr----~~~~~R~~al~Laa~Ll~ 261 (543)
T PF05536_consen 216 PILPLESPPSPKWLSDLRKGLRDILQSR----LTPSQRDPALNLAASLLD 261 (543)
T ss_pred CccccccCChhhhHHHHHHHHHHHHhcC----CCHHHHHHHHHHHHHHHH
Confidence 211 111111 22334444455443 355556666555555543
|
|
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=3.8e-06 Score=88.84 Aligned_cols=142 Identities=13% Similarity=0.097 Sum_probs=123.9
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhh
Q psy12605 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378 (845)
Q Consensus 299 v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~ 378 (845)
-..+++.+|.+++..-...+.-+.+..+.+.|+++|+.++..+.-.+...++|......+....+++.+++..|+..+.+
T Consensus 405 ~~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 405 DFVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 45577888998887767778888888999999999999888888888999999988888888899999999999999986
Q ss_pred cccccCChhHHHHHHHHHHHHhcCChHh-HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 379 VGRIVLRPNLQFEAAWALTNIASGTSAQ-TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 379 ~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
. +..+|....|.+.++..++.+. .-.+...-++..++.+.+++...|+.+++..|.|+..++
T Consensus 485 K-----DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~ 547 (743)
T COG5369 485 K-----DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDT 547 (743)
T ss_pred c-----hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhccccc
Confidence 3 6799999999999999876544 557788889999999999999999999999999998765
|
|
| >KOG3678|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.9e-05 Score=80.74 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=144.2
Q ss_pred HHHHhcCchhhHHhhccCCch--hhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhh
Q psy12605 277 QMVIDSGVVPSLIPLLSHKEV--KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNIT 353 (845)
Q Consensus 277 ~~~~~~g~i~~Lv~lL~~~~~--~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~ 353 (845)
..+...|.+..|+.++..++. .++..|.+.|-.+... +++..+...| +..++.+-+. ...+..+..+..|.++.
T Consensus 174 D~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a--eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~mF 250 (832)
T KOG3678|consen 174 DAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA--ENRDRVARIG-LGVILNLAKEREPVELARSVAGILEHMF 250 (832)
T ss_pred hHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh--hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHHHh
Confidence 345567999999999988764 4699999999988653 3345555544 5555555543 45678889999999999
Q ss_pred cCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChHHHHHhhCCCCHHHHH
Q psy12605 354 AGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 432 (845)
Q Consensus 354 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 432 (845)
.++.+..+.++..|++..++-..+.. +|.+-+.++.+|+|++- +..+..+.+++..+-+.|..+-.+.++-.+.
T Consensus 251 KHSeet~~~Lvaa~~lD~vl~~~rRt-----~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~ 325 (832)
T KOG3678|consen 251 KHSEETCQRLVAAGGLDAVLYWCRRT-----DPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRL 325 (832)
T ss_pred hhhHHHHHHHHhhcccchheeecccC-----CHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHH
Confidence 99999999999999999998888874 79999999999999886 4557788899999999999999999888999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCC
Q psy12605 433 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP 470 (845)
Q Consensus 433 ~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~ 470 (845)
.|+.+.+-++... ++...+.++|-+..+-.++...++
T Consensus 326 ~AClAV~vlat~K-E~E~~VrkS~TlaLVEPlva~~DP 362 (832)
T KOG3678|consen 326 HACLAVAVLATNK-EVEREVRKSGTLALVEPLVASLDP 362 (832)
T ss_pred HHHHHHhhhhhhh-hhhHHHhhccchhhhhhhhhccCc
Confidence 9999999988754 344456677765544444444444
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00012 Score=79.69 Aligned_cols=244 Identities=20% Similarity=0.096 Sum_probs=171.0
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
.++.|+..|...++++++..++.++.... ++ .++..|+..|.++++.++..++.+|+.+-..
T Consensus 55 a~~~L~~aL~~d~~~ev~~~aa~al~~~~--~~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~------- 116 (410)
T TIGR02270 55 ATELLVSALAEADEPGRVACAALALLAQE--DA---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGGR------- 116 (410)
T ss_pred HHHHHHHHHhhCCChhHHHHHHHHHhccC--Ch---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCch-------
Confidence 58889999965666787776666654332 11 1488999999999999999999999987522
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
+..+.|+.++.+. +..++..++.++.... ....+.+..+++++++.
T Consensus 117 ----~a~~~L~~~L~~~-~p~vR~aal~al~~r~------------~~~~~~L~~~L~d~d~~----------------- 162 (410)
T TIGR02270 117 ----QAEPWLEPLLAAS-EPPGRAIGLAALGAHR------------HDPGPALEAALTHEDAL----------------- 162 (410)
T ss_pred ----HHHHHHHHHhcCC-ChHHHHHHHHHHHhhc------------cChHHHHHHHhcCCCHH-----------------
Confidence 2366778888766 4467877776666521 12345677778888888
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccc
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~ 328 (845)
++..|+.+|.++.. ...++.|...+.+.++.|+..|+.+++.+- .+ .++.
T Consensus 163 --------Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~lG--~~---------~A~~ 212 (410)
T TIGR02270 163 --------VRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLAG--SR---------LAWG 212 (410)
T ss_pred --------HHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHcC--CH---------hHHH
Confidence 88999999987653 244566778889999999999999997762 22 2334
Q ss_pred hhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH
Q psy12605 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ 408 (845)
Q Consensus 329 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (845)
.+..+........+..+..++... +. ...++.|..++++ +.++..++++++.+-..
T Consensus 213 ~l~~~~~~~g~~~~~~l~~~lal~--~~---------~~a~~~L~~ll~d-------~~vr~~a~~AlG~lg~p------ 268 (410)
T TIGR02270 213 VCRRFQVLEGGPHRQRLLVLLAVA--GG---------PDAQAWLRELLQA-------AATRREALRAVGLVGDV------ 268 (410)
T ss_pred HHHHHHhccCccHHHHHHHHHHhC--Cc---------hhHHHHHHHHhcC-------hhhHHHHHHHHHHcCCc------
Confidence 555544444444444444444433 11 1456777888765 35899999999977543
Q ss_pred HHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 409 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 409 ~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
..++.|+..+.++. ++..|..++..|++-.
T Consensus 269 -----~av~~L~~~l~d~~--~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 269 -----EAAPWCLEAMREPP--WARLAGEAFSLITGMD 298 (410)
T ss_pred -----chHHHHHHHhcCcH--HHHHHHHHHHHhhCCC
Confidence 47888888887665 9999999999998754
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >KOG1060|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00088 Score=74.73 Aligned_cols=356 Identities=16% Similarity=0.175 Sum_probs=205.7
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhH
Q psy12605 99 RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178 (845)
Q Consensus 99 ~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~L 178 (845)
.+..+.+|..|+-++.++-+-+++.... .++.+-.||.+.++-+.-.|+.+.-.+|-+ .-+.+-. -...+
T Consensus 153 ~D~s~yVRk~AA~AIpKLYsLd~e~k~q-----L~e~I~~LLaD~splVvgsAv~AF~evCPe---rldLIHk--nyrkl 222 (968)
T KOG1060|consen 153 TDPSPYVRKTAAHAIPKLYSLDPEQKDQ-----LEEVIKKLLADRSPLVVGSAVMAFEEVCPE---RLDLIHK--NYRKL 222 (968)
T ss_pred cCCcHHHHHHHHHhhHHHhcCChhhHHH-----HHHHHHHHhcCCCCcchhHHHHHHHHhchh---HHHHhhH--HHHHH
Confidence 4567788888888888888766766664 345566778888888888888888888743 3333322 24455
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh---hHHh-h---HHHHHHhhccc---CCchh--hHHHHHH-HhhhCh
Q psy12605 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM---STII-E---LLPALNILIHH---HDTSV--SIYLWLS-IIEKNP 245 (845)
Q Consensus 179 v~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~---~~~~-~---~l~~L~~ll~~---~~~~~--~~~~~~~-l~~~~~ 245 (845)
++++..- +.--+..++..|..-|+..=+.+.. .... + -.+....-++. .|+++ .++.... +...||
T Consensus 223 C~ll~dv-deWgQvvlI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~ 301 (968)
T KOG1060|consen 223 CRLLPDV-DEWGQVVLINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNP 301 (968)
T ss_pred Hhhccch-hhhhHHHHHHHHHHHHHhcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCc
Confidence 5555433 3344555566666666543211100 0000 0 00000000111 12221 1111122 233344
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCC
Q psy12605 246 QISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCD 325 (845)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~ 325 (845)
. ++-.++.+..+++-.. . ...+++.|+.+|.+ +..++...+..+..++...+..
T Consensus 302 s----------VVmA~aql~y~lAP~~--~-----~~~i~kaLvrLLrs-~~~vqyvvL~nIa~~s~~~~~l-------- 355 (968)
T KOG1060|consen 302 S----------VVMAVAQLFYHLAPKN--Q-----VTKIAKALVRLLRS-NREVQYVVLQNIATISIKRPTL-------- 355 (968)
T ss_pred H----------HHHHHHhHHHhhCCHH--H-----HHHHHHHHHHHHhc-CCcchhhhHHHHHHHHhcchhh--------
Confidence 3 7777888888887432 1 22457789998865 4457777788888887654332
Q ss_pred ccchhhHhh-cCCc-hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 326 ALSHFPALL-THPK-EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 326 ~l~~L~~lL-~~~~-~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
+.|.+-.+. .+.| ..++.--+.+|.+++.... +. .+++.+-.++.+. +..+...+..+++..+...
T Consensus 356 F~P~lKsFfv~ssDp~~vk~lKleiLs~La~esn--i~-----~ILrE~q~YI~s~-----d~~faa~aV~AiGrCA~~~ 423 (968)
T KOG1060|consen 356 FEPHLKSFFVRSSDPTQVKILKLEILSNLANESN--IS-----EILRELQTYIKSS-----DRSFAAAAVKAIGRCASRI 423 (968)
T ss_pred hhhhhhceEeecCCHHHHHHHHHHHHHHHhhhcc--HH-----HHHHHHHHHHhcC-----chhHHHHHHHHHHHHHHhh
Confidence 234455544 2333 3445555667777743211 11 1334455555554 3356677777777776543
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
.. +...++..|+.++.+.+..|...++..|..+...+|.-. ..++..|.+++.+-.-..-+..+.|.++.
T Consensus 424 ~s-----v~~tCL~gLv~Llsshde~Vv~eaV~vIk~Llq~~p~~h-----~~ii~~La~lldti~vp~ARA~IiWLige 493 (968)
T KOG1060|consen 424 GS-----VTDTCLNGLVQLLSSHDELVVAEAVVVIKRLLQKDPAEH-----LEILFQLARLLDTILVPAARAGIIWLIGE 493 (968)
T ss_pred Cc-----hhhHHHHHHHHHHhcccchhHHHHHHHHHHHHhhChHHH-----HHHHHHHHHHhhhhhhhhhhceeeeeehh
Confidence 22 223467789999999999999999999999988766422 22456677777544334445667899998
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 518 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~ 518 (845)
.|... .....+.+..+.+-+.++++++.-.
T Consensus 494 ~~e~v-----pri~PDVLR~laksFs~E~~evKlQ 523 (968)
T KOG1060|consen 494 YCEIV-----PRIAPDVLRKLAKSFSDEGDEVKLQ 523 (968)
T ss_pred hhhhc-----chhchHHHHHHHHhhccccchhhHH
Confidence 88653 2344566666777777777666433
|
|
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00022 Score=76.55 Aligned_cols=347 Identities=17% Similarity=0.157 Sum_probs=192.5
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 165 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~ 165 (845)
-.+++|+.+.++ ++.+..+|..|+..|.++++.. +......-..+...|.++...++..++.. +..|-.+..+
T Consensus 82 ~~~iv~Pv~~cf-~D~d~~vRyyACEsLYNiaKv~-k~~v~~~Fn~iFdvL~klsaDsd~~V~~~-aeLLdRLikd---- 154 (675)
T KOG0212|consen 82 LEKIVPPVLNCF-SDQDSQVRYYACESLYNIAKVA-KGEVLVYFNEIFDVLCKLSADSDQNVRGG-AELLDRLIKD---- 154 (675)
T ss_pred HHHhhHHHHHhc-cCccceeeeHhHHHHHHHHHHh-ccCcccchHHHHHHHHHHhcCCccccccH-HHHHHHHHHH----
Confidence 356788889998 5677899999999999998742 22222222345666666666665555433 2333322211
Q ss_pred HHHHHhcC---ChhhHHhhhcC---CCCHHHHHHHHHHHHHhhcCCCCCCCh-hHHhhHHHHHHhhcccCCchhhHHHHH
Q psy12605 166 RDYVINMG---VVPPLLSFIKP---DIPISFLRNVTWVIVNLCRNKDPPPSM-STIIELLPALNILIHHHDTSVSIYLWL 238 (845)
Q Consensus 166 r~~i~~~g---~i~~Lv~ll~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~ll~~~~~~~~~~~~~ 238 (845)
.+.+.. -++.++.+|+. ..+...|...+.-|..+-.-+ ..++ ......++-|.+++.++.++
T Consensus 155 --IVte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~e------- 223 (675)
T KOG0212|consen 155 --IVTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSDE------- 223 (675)
T ss_pred --hccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcHH-------
Confidence 111111 24444544432 112245555555555443222 2222 23345667777888877777
Q ss_pred HHhhhChhhHHhhhhhHHHHHHHHHHHHH----hhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCC
Q psy12605 239 SIIEKNPQISKILVSKMKILVDTVWALSY----LTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~~~a~~~L~~----l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~ 314 (845)
++..+-.++.. +... +... --...++.++.-+.++++.++..|+.-|..+..-.
T Consensus 224 ------------------Vr~~~~t~l~~fL~eI~s~-P~s~---d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~ 281 (675)
T KOG0212|consen 224 ------------------VRTLTDTLLSEFLAEIRSS-PSSM---DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIP 281 (675)
T ss_pred ------------------HHHHHHHHHHHHHHHHhcC-cccc---CcccchhhccccccCCcHHHHHHHHHHHHHHhcCC
Confidence 44333333332 2221 1111 12256788899999999999999988888877543
Q ss_pred hhhHHHHhcCCccchhhHhhcCCch-hhHHHHHH---HHHHhhcCChHHHHHHHh-cCChHHHHHHhhhcccccCChhHH
Q psy12605 315 DEQTQVILNCDALSHFPALLTHPKE-KICKEAVW---FLSNITAGNQAQVQAVID-AGLLPKIIANLQKVGRIVLRPNLQ 389 (845)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~---~L~nl~~~~~~~~~~l~~-~~~i~~Lv~lL~~~~~~~~~~~v~ 389 (845)
+.. -...-.|++..++.++.+..+ .++..+.. .+..++... ...+. ++ ..++..+-+.+.+ +..+.|
T Consensus 282 g~~-~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~-~~~~~-id~~~ii~vl~~~l~~-----~~~~tr 353 (675)
T KOG0212|consen 282 GRD-LLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSE-RLKEE-IDYGSIIEVLTKYLSD-----DREETR 353 (675)
T ss_pred Ccc-hhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhh-hhccc-cchHHHHHHHHHHhhc-----chHHHH
Confidence 321 112223666777777776555 34443322 223332211 11111 22 2345666666666 367788
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccC--C
Q psy12605 390 FEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--P 467 (845)
Q Consensus 390 ~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~--~ 467 (845)
..+..-+..+-...+.. -........+.|+.-|.+.+++|...++..+++++.++... +..+-+.++|+ .
T Consensus 354 i~~L~Wi~~l~~~~p~q-l~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~-------~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 354 IAVLNWIILLYHKAPGQ-LLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP-------NLRKFLLSLLEMFK 425 (675)
T ss_pred HHHHHHHHHHHhhCcch-hhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc-------cHHHHHHHHHHHHh
Confidence 87766666665433322 22233456778999999999999999999999999866432 22333444433 1
Q ss_pred CCChhHHHHHHHHHHHhhcCC
Q psy12605 468 DIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 468 ~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+++.-+.......++.||-.-
T Consensus 426 e~~~~l~~Rg~lIIRqlC~lL 446 (675)
T KOG0212|consen 426 EDTKLLEVRGNLIIRQLCLLL 446 (675)
T ss_pred hhhHHHHhhhhHHHHHHHHHh
Confidence 222233445566666776533
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.5e-06 Score=59.07 Aligned_cols=40 Identities=43% Similarity=0.792 Sum_probs=38.1
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
+++++..+++.|++|.|+++|+++++++++.|+|+|+||+
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999997
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1242|consensus | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0047 Score=67.96 Aligned_cols=396 Identities=14% Similarity=0.140 Sum_probs=227.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
++.++ +-+..+.++.|.....+|..+........... +.+.+.++++ ......|..+++.++.+..+. ...
T Consensus 98 ~~~~~-~~~~tps~~~q~~~~~~l~~~~~~~~~~~~~~-----~l~~l~~ll~-~~~~~~~~~aa~~~ag~v~g~--~i~ 168 (569)
T KOG1242|consen 98 IEILL-EELDTPSKSVQRAVSTCLPPLVVLSKGLSGEY-----VLELLLELLT-STKIAERAGAAYGLAGLVNGL--GIE 168 (569)
T ss_pred HHHHH-HhcCCCcHHHHHHHHHHhhhHHHHhhccCHHH-----HHHHHHHHhc-cccHHHHhhhhHHHHHHHcCc--HHh
Confidence 44455 67777888888888888887765443322222 4777888885 566678999999999998763 455
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHH-HHHHHHHhcCCChhhHHHHHhcCC---hhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQ-AVWALGNIIGDGPQLRDYVINMGV---VPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~-a~~~L~nla~~~~~~r~~i~~~g~---i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
.+.+.+.+..|-+...+.....+.. ++-+.-..+...- ...+.+. +|.++....+. ...+|..|..+...+
T Consensus 169 ~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----~~~EPyiv~~lp~il~~~~d~-~~~Vr~Aa~~a~kai 243 (569)
T KOG1242|consen 169 SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----PPFEPYIVPILPSILTNFGDK-INKVREAAVEAAKAI 243 (569)
T ss_pred hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----CCCCchHHhhHHHHHHHhhcc-chhhhHHHHHHHHHH
Confidence 5667788888888887764444332 2222221111100 1112223 34444444333 346787777666665
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
.+.-. .....-.+|.+..-+.....+ .+..++..+..++...+...... -
T Consensus 244 ~~~~~----~~aVK~llpsll~~l~~~kWr-------------------------tK~aslellg~m~~~ap~qLs~~-l 293 (569)
T KOG1242|consen 244 MRCLS----AYAVKLLLPSLLGSLLEAKWR-------------------------TKMASLELLGAMADCAPKQLSLC-L 293 (569)
T ss_pred HHhcC----cchhhHhhhhhHHHHHHHhhh-------------------------hHHHHHHHHHHHHHhchHHHHHH-H
Confidence 54321 122334455544444333333 66677777887777766665554 6
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcC--ChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTG--TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~--~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 359 (845)
..++|.+.+.|.+..++++.++..++..++.- +++.. ..+|.|++.+.++...+. ++...|+.-..-
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~------~~ip~Lld~l~dp~~~~~-e~~~~L~~ttFV---- 362 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQ------KIIPTLLDALADPSCYTP-ECLDSLGATTFV---- 362 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHH------HHHHHHHHHhcCcccchH-HHHHhhcceeee----
Confidence 68999999999999999999999999998753 22211 367888888887653332 222333321100
Q ss_pred HHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC--ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHH
Q psy12605 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG--TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWA 437 (845)
Q Consensus 360 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~ 437 (845)
. .+++--+..++.++.++. .+.+..+++.++.++.|+++- ++.....+. ...+|-|-..+.+..|++|.-+..+
T Consensus 363 -~-~V~~psLalmvpiL~R~l-~eRst~~kr~t~~IidNm~~LveDp~~lapfl-~~Llp~lk~~~~d~~PEvR~vaarA 438 (569)
T KOG1242|consen 363 -A-EVDAPSLALMVPILKRGL-AERSTSIKRKTAIIIDNMCKLVEDPKDLAPFL-PSLLPGLKENLDDAVPEVRAVAARA 438 (569)
T ss_pred -e-eecchhHHHHHHHHHHHH-hhccchhhhhHHHHHHHHHHhhcCHHHHhhhH-HHHhhHHHHHhcCCChhHHHHHHHH
Confidence 0 012223334444444321 013667889999999999873 232222222 1245556666667789999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhh
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 508 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll 508 (845)
|+.+..+-... .+ .+.++.+...+..........-++..++..+.+. ......+.++.+..-.
T Consensus 439 L~~l~e~~g~~--~f--~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~----~v~~~~~~~~~~~a~~ 501 (569)
T KOG1242|consen 439 LGALLERLGEV--SF--DDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGL----GVEKVEDILPEILANA 501 (569)
T ss_pred HHHHHHHHHhh--cc--cccccHHHHhhccchhhhhhHHHhhhHHHHHhcc----cchHHHHHHHHHHHHH
Confidence 98776432111 11 3455666666554433222333344444444333 1234445555554333
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.003 Score=68.58 Aligned_cols=149 Identities=15% Similarity=0.199 Sum_probs=99.9
Q ss_pred ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc---CChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 368 LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS---GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 368 ~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
++..++..|++ ..+.++..|+...+.++. .+.+ .+.+...| -.|.+.|....+++....+.+++.|...
T Consensus 605 ivStiL~~L~~-----k~p~vR~~aadl~~sl~~vlk~c~e-~~~l~klg--~iLyE~lge~ypEvLgsil~Ai~~I~sv 676 (975)
T COG5181 605 IVSTILKLLRS-----KPPDVRIRAADLMGSLAKVLKACGE-TKELAKLG--NILYENLGEDYPEVLGSILKAICSIYSV 676 (975)
T ss_pred HHHHHHHHhcC-----CCccHHHHHHHHHHHHHHHHHhcch-HHHHHHHh--HHHHHhcCcccHHHHHHHHHHHHHHhhh
Confidence 45566777777 478999999888888753 2211 12222222 3477888889999999888888887642
Q ss_pred ChHHHHH-HHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH--H
Q psy12605 445 GPQLRDY-VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW--L 521 (845)
Q Consensus 445 ~~~~~~~-l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~--l 521 (845)
.. .+.. ==-.|+++.|..+|.+.. .++..+.+..++-+|...+..........+.--|..++.+...+++.++. +
T Consensus 677 ~~-~~~mqpPi~~ilP~ltPILrnkh-~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tf 754 (975)
T COG5181 677 HR-FRSMQPPISGILPSLTPILRNKH-QKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETF 754 (975)
T ss_pred hc-ccccCCchhhccccccHhhhhhh-HHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhh
Confidence 10 0000 002478888988887654 37888889999999998766555556666666677778888888887654 5
Q ss_pred Hhhhc
Q psy12605 522 SIIEK 526 (845)
Q Consensus 522 ~~l~~ 526 (845)
.+++.
T Consensus 755 G~Is~ 759 (975)
T COG5181 755 GCISR 759 (975)
T ss_pred hhHHh
Confidence 66554
|
|
| >TIGR02270 conserved hypothetical protein | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00032 Score=76.32 Aligned_cols=243 Identities=16% Similarity=0.088 Sum_probs=166.9
Q ss_pred cHHHHHHHHHc-CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAAR-KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~-~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.++.++ ..+. ++++.....++..+. ..+ ++ ..+..|++.| .+.++.++..++.+|..+-..
T Consensus 55 a~~~L~-~aL~~d~~~ev~~~aa~al~---~~~-~~--------~~~~~L~~~L-~d~~~~vr~aaa~ALg~i~~~---- 116 (410)
T TIGR02270 55 ATELLV-SALAEADEPGRVACAALALL---AQE-DA--------LDLRSVLAVL-QAGPEGLCAGIQAALGWLGGR---- 116 (410)
T ss_pred HHHHHH-HHHhhCCChhHHHHHHHHHh---ccC-Ch--------HHHHHHHHHh-cCCCHHHHHHHHHHHhcCCch----
Confidence 345555 6663 455655554444442 212 11 1389999999 466778999999999887432
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
+..+.|+.+|+++++.++..++.+++..-.+ ..+.+..+|++. +..++..|+.+|..+..
T Consensus 117 -------~a~~~L~~~L~~~~p~vR~aal~al~~r~~~------------~~~~L~~~L~d~-d~~Vra~A~raLG~l~~ 176 (410)
T TIGR02270 117 -------QAEPWLEPLLAASEPPGRAIGLAALGAHRHD------------PGPALEAALTHE-DALVRAAALRALGELPR 176 (410)
T ss_pred -------HHHHHHHHHhcCCChHHHHHHHHHHHhhccC------------hHHHHHHHhcCC-CHHHHHHHHHHHHhhcc
Confidence 4788899999999999999999888874322 246777888765 55899999999988764
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
. ..++.|...+.+.++. ++..|.+++..+.. . .
T Consensus 177 ~-----------~a~~~L~~al~d~~~~-------------------------VR~aA~~al~~lG~--~---------~ 209 (410)
T TIGR02270 177 R-----------LSESTLRLYLRDSDPE-------------------------VRFAALEAGLLAGS--R---------L 209 (410)
T ss_pred c-----------cchHHHHHHHcCCCHH-------------------------HHHHHHHHHHHcCC--H---------h
Confidence 3 3566777888888888 89999999876532 1 2
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
.+..+..+...+.......+...++.. +.+ ..++.|..++.++. ++..++++++.+-
T Consensus 210 A~~~l~~~~~~~g~~~~~~l~~~lal~--~~~---------~a~~~L~~ll~d~~--vr~~a~~AlG~lg---------- 266 (410)
T TIGR02270 210 AWGVCRRFQVLEGGPHRQRLLVLLAVA--GGP---------DAQAWLRELLQAAA--TRREALRAVGLVG---------- 266 (410)
T ss_pred HHHHHHHHHhccCccHHHHHHHHHHhC--Cch---------hHHHHHHHHhcChh--hHHHHHHHHHHcC----------
Confidence 234555544444444444444444433 211 46677888887744 8999999999872
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
....++.|++.+.+ +.++..|..++..|+.-+
T Consensus 267 -~p~av~~L~~~l~d-------~~~aR~A~eA~~~ItG~~ 298 (410)
T TIGR02270 267 -DVEAAPWCLEAMRE-------PPWARLAGEAFSLITGMD 298 (410)
T ss_pred -CcchHHHHHHHhcC-------cHHHHHHHHHHHHhhCCC
Confidence 23467888888864 359999999999998643
|
Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown. |
| >COG5369 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-05 Score=81.12 Aligned_cols=268 Identities=16% Similarity=0.154 Sum_probs=190.6
Q ss_pred HHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc
Q psy12605 148 CEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 227 (845)
Q Consensus 148 ~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~ 227 (845)
..+++.+|-.++..-...|.-+.+..+.++|+++|.++ +.-+.-.+...++|+.-.-.+........+++..|+.++.+
T Consensus 406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~P-eimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s 484 (743)
T COG5369 406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNP-EIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS 484 (743)
T ss_pred HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCc-cceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence 44556667777765566788888889999999999886 33455567777888776655666677788999999999998
Q ss_pred CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHH
Q psy12605 228 HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRA 306 (845)
Q Consensus 228 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~ 306 (845)
.|.. .+....|.+.++.-+..+..+ .+...-++..++.+..++...++...+..
T Consensus 485 KDda-------------------------Lqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQi 539 (743)
T COG5369 485 KDDA-------------------------LQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQI 539 (743)
T ss_pred chhh-------------------------hhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHH
Confidence 8777 889999999999876554322 23456778899999999999999999999
Q ss_pred HHHHhcCC---hhhHHHHhcCC----ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh-cCChHHHHHHhhh
Q psy12605 307 VGNIVTGT---DEQTQVILNCD----ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID-AGLLPKIIANLQK 378 (845)
Q Consensus 307 L~nl~~~~---~~~~~~i~~~~----~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~-~~~i~~Lv~lL~~ 378 (845)
|+|+..+. +.....+++.. ....+++.+...++-.-...+..|.++++.+......+.+ .+.+..+.+.|..
T Consensus 540 lrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e 619 (743)
T COG5369 540 LRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDE 619 (743)
T ss_pred HHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHH
Confidence 99997632 22222222221 3455666667777777777799999998887777666654 3444444433321
Q ss_pred cc------------------------------------------------cccCChhHHHHHHHHHHHHhc---C-----
Q psy12605 379 VG------------------------------------------------RIVLRPNLQFEAAWALTNIAS---G----- 402 (845)
Q Consensus 379 ~~------------------------------------------------~~~~~~~v~~~a~~~L~~l~~---~----- 402 (845)
.. ..+++.+.-.+..|.+.|+.- +
T Consensus 620 ~a~r~~L~pg~~~~~v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtr 699 (743)
T COG5369 620 FAGRTPLSPGSKEEHVLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTR 699 (743)
T ss_pred HcccCCCCCCCCcccccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccch
Confidence 10 011334566677788777542 1
Q ss_pred -ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 403 -TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 403 -~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
+.+..+.+.+.|.-+.+..+..++++.|++.+-.+|.++
T Consensus 700 atveR~~iL~~~G~~e~l~k~q~~~Sl~vrek~~taL~~l 739 (743)
T COG5369 700 ATVERIQILCANGIREWLVKIQAKDSLIVREKIGTALENL 739 (743)
T ss_pred hhHHHHHHHHHccHHHHHHHHhccCcHHHHHHHHHHHHhh
Confidence 225677888889899999999999999999999998876
|
|
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0053 Score=73.61 Aligned_cols=341 Identities=14% Similarity=0.105 Sum_probs=173.3
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhc-CChhhHHHHH
Q psy12605 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS-GTSAQTQEVV 128 (845)
Q Consensus 50 v~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~-~~~~~~~~i~ 128 (845)
+...+.+++|..|..+..=|-.+..+-....-.......+......+| .+++.-+|--|+.-|+-+-. ++...++.
T Consensus 823 l~~~~~s~nph~R~A~~VWLLs~vq~l~~~~~v~l~~~eI~~aF~~~L-sd~dEf~QDvAsrGlglVYelgd~~~k~~-- 899 (1702)
T KOG0915|consen 823 LDTLLTSPNPHERQAGCVWLLSLVQYLGQQPEVVLMLKEIQEAFSHLL-SDNDEFSQDVASRGLGLVYELGDSSLKKS-- 899 (1702)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHHHHHhccCchhhhccHHHHHHHHHHh-cccHHHHHHHHhcCceEEEecCCchhHHH--
Confidence 336778888988888765554443332211111122234457778888 45666667666665554322 22333333
Q ss_pred HcCChHHHHHhhCCCC---------hhH-------------HHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC
Q psy12605 129 AAGAVPLFLRLLMSPH---------SNV-------------CEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI 186 (845)
Q Consensus 129 ~~g~i~~L~~lL~s~~---------~~v-------------~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~ 186 (845)
.+..|++-|-.+. .++ ......=|+|+|++- -+...|-.++++.+++.
T Consensus 900 ---LV~sL~~tl~~Gkr~~~~vs~eTelFq~G~Lg~Tp~Gg~isTYKELc~LASdl-------~qPdLVYKFM~LAnh~A 969 (1702)
T KOG0915|consen 900 ---LVDSLVNTLTGGKRKAIKVSEETELFQEGTLGKTPDGGKISTYKELCNLASDL-------GQPDLVYKFMQLANHNA 969 (1702)
T ss_pred ---HHHHHHHHHhccccccceeccchhcccCCcCCCCCCCCcchHHHHHHHHHhhc-------CChHHHHHHHHHhhhhc
Confidence 4445555553321 111 112233344444331 01112333444444443
Q ss_pred CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH
Q psy12605 187 PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266 (845)
Q Consensus 187 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~ 266 (845)
.=.-+.-|+.-+..++.... ..........+|.|.+.=.++++. ++......=.
T Consensus 970 ~wnSk~GaAfGf~~i~~~a~-~kl~p~l~kLIPrLyRY~yDP~~~-------------------------Vq~aM~sIW~ 1023 (1702)
T KOG0915|consen 970 TWNSKKGAAFGFGAIAKQAG-EKLEPYLKKLIPRLYRYQYDPDKK-------------------------VQDAMTSIWN 1023 (1702)
T ss_pred hhhcccchhhchHHHHHHHH-HhhhhHHHHhhHHHhhhccCCcHH-------------------------HHHHHHHHHH
Confidence 22334445555555554331 111122334555555554555555 3333222222
Q ss_pred HhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh--hHHHHhcCCccchhhHhhcCCchhhHHH
Q psy12605 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE--QTQVILNCDALSHFPALLTHPKEKICKE 344 (845)
Q Consensus 267 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~--~~~~i~~~~~l~~L~~lL~~~~~~~~~~ 344 (845)
.|...+......+. ..+++-|+.-|.+....||++++-+|..+..+.+. ..+.+- .....+.+.+++-.+.+|+.
T Consensus 1024 ~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lp--elw~~~fRvmDDIKEsVR~a 1100 (1702)
T KOG0915|consen 1024 ALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLP--ELWEAAFRVMDDIKESVREA 1100 (1702)
T ss_pred HhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 33333333333332 25677778888899999999999999999987543 222221 24445555566666777766
Q ss_pred H---HHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHH
Q psy12605 345 A---VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 421 (845)
Q Consensus 345 a---~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~ 421 (845)
| +.+|+.++....+.....-...++..++.+|-+.+-..+-++++..+..++..++.+.+...+... ...++.|+.
T Consensus 1101 a~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~ 1179 (1702)
T KOG0915|consen 1101 ADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLN 1179 (1702)
T ss_pred HHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHH
Confidence 5 455665543221111111112234444544444332224678999999999999976654322211 245666777
Q ss_pred hhCCCCHHHHHH
Q psy12605 422 LLMSPHSNVCEQ 433 (845)
Q Consensus 422 lL~~~~~~v~~~ 433 (845)
....-.+.|...
T Consensus 1180 ~~s~lE~~vLnY 1191 (1702)
T KOG0915|consen 1180 AYSELEPQVLNY 1191 (1702)
T ss_pred HccccchHHHHH
Confidence 766655555543
|
|
| >KOG0211|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.0035 Score=72.64 Aligned_cols=337 Identities=16% Similarity=0.150 Sum_probs=207.1
Q ss_pred CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHH
Q psy12605 57 DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 136 (845)
Q Consensus 57 ~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L 136 (845)
..-.++.+++..+...........- ..-.+|.+..+- .++..+.|..++..+.......++ ..++...-+..
T Consensus 171 eet~vr~k~ve~l~~v~~~~~~~~~----~~~lv~l~~~l~-~~d~~~sr~sacglf~~~~~~~~~---~~vk~elr~~~ 242 (759)
T KOG0211|consen 171 EETGVREKAVESLLKVAVGLPKEKL----REHLVPLLKRLA-TGDWFQSRLSACGLFGKLYVSLPD---DAVKRELRPIV 242 (759)
T ss_pred HHHHHHHHHHHHHHHHHHhcChHHH----HHHHHHHHHHcc-chhhhhcchhhhhhhHHhccCCCh---HHHHHHHHHHH
Confidence 3344577778888777654322111 122344433333 344555666777777776654332 23334456666
Q ss_pred HHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhh
Q psy12605 137 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE 216 (845)
Q Consensus 137 ~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 216 (845)
-++.+...+.++..++.-+++++.. ........+.++.+..+...+ ...++..|...+.++...-+... .....
T Consensus 243 ~~lc~d~~~~Vr~~~a~~l~~~a~~---~~~~~~~s~v~~~~~~L~~Dd-qdsVr~~a~~~~~~l~~l~~~~~--d~~~~ 316 (759)
T KOG0211|consen 243 QSLCQDDTPMVRRAVASNLGNIAKV---LESEIVKSEVLPTLIQLLRDD-QDSVREAAVESLVSLLDLLDDDD--DVVKS 316 (759)
T ss_pred HhhccccchhhHHHHHhhhHHHHHH---HHHHHHHhhccHHHhhhhhcc-hhhHHHHHHHHHHHHHHhcCCch--hhhhh
Confidence 6777778899999999999999853 334667778888889888777 45899999998888877553221 34556
Q ss_pred HHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCc
Q psy12605 217 LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE 296 (845)
Q Consensus 217 ~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~ 296 (845)
..+.+++...+.+..++- +....++-|...-.. .......+++...++++..
T Consensus 317 ~~~~l~~~~~d~~~~v~~----------------------~~~~~~~~L~~~~~~------~~~~~~~~~~~~~l~~~~~ 368 (759)
T KOG0211|consen 317 LTESLVQAVEDGSWRVSY----------------------MVADKFSELSSAVGP------SATRTQLVPPVSNLLKDEE 368 (759)
T ss_pred hhHHHHHHhcChhHHHHH----------------------HHhhhhhhHHHHhcc------ccCcccchhhHHHHhcchh
Confidence 677777777665554100 222223322222111 1112345677888888888
Q ss_pred hhhHHHHHHHHHHHhcC-ChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHH
Q psy12605 297 VKVQTASLRAVGNIVTG-TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375 (845)
Q Consensus 297 ~~v~~~al~~L~nl~~~-~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~l 375 (845)
.+.+.++..-...++.. +......+.....+|.+-.+..+.+..++...+.....+.--.+. .---....|.++..
T Consensus 369 ~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~k---~~ti~~llp~~~~~ 445 (759)
T KOG0211|consen 369 WEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILPK---ERTISELLPLLIGN 445 (759)
T ss_pred hhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCCc---CcCccccChhhhhh
Confidence 88888777766666532 223334455556788888888888888888877766665332220 00012356666767
Q ss_pred hhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 376 LQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 376 L~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+++ ..+.++....+.+..+-...............++.+..+-......++....+.+..++.
T Consensus 446 l~d-----e~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~ 508 (759)
T KOG0211|consen 446 LKD-----EDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLAL 508 (759)
T ss_pred cch-----hhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 766 478899988887766554333333334444556667777666677778777777777664
|
|
| >KOG0212|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00034 Score=75.08 Aligned_cols=332 Identities=14% Similarity=0.129 Sum_probs=195.6
Q ss_pred cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH--HhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC
Q psy12605 130 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV--INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 207 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i--~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 207 (845)
.+.+|+.+..+.+++..++..|+..|.|++.- .|..+ ....++..+.++.... + .-.+.++..+-.+.++--.
T Consensus 83 ~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv---~k~~v~~~Fn~iFdvL~klsaDs-d-~~V~~~aeLLdRLikdIVt 157 (675)
T KOG0212|consen 83 EKIVPPVLNCFSDQDSQVRYYACESLYNIAKV---AKGEVLVYFNEIFDVLCKLSADS-D-QNVRGGAELLDRLIKDIVT 157 (675)
T ss_pred HHhhHHHHHhccCccceeeeHhHHHHHHHHHH---hccCcccchHHHHHHHHHHhcCC-c-cccccHHHHHHHHHHHhcc
Confidence 36899999999999999999999999999843 22221 1222334444444332 2 3345566666666665422
Q ss_pred CCC-hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH-HhcCch
Q psy12605 208 PPS-MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV-IDSGVV 285 (845)
Q Consensus 208 ~~~-~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~g~i 285 (845)
... .....+.+|.|...+...++. ++.....-+..+-...+ ++++ .-..++
T Consensus 158 e~~~tFsL~~~ipLL~eriy~~n~~-------------------------tR~flv~Wl~~Lds~P~--~~m~~yl~~~l 210 (675)
T KOG0212|consen 158 ESASTFSLPEFIPLLRERIYVINPM-------------------------TRQFLVSWLYVLDSVPD--LEMISYLPSLL 210 (675)
T ss_pred ccccccCHHHHHHHHHHHHhcCCch-------------------------HHHHHHHHHHHHhcCCc--HHHHhcchHHH
Confidence 222 345667888887777776666 44444443443322221 1222 123567
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcC---ChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTG---TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~---~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
+-|..+|++++.+|+..+=.+++++... ++.. +--...++.++..+.++++.++..|..-+..+..-.+.. -.
T Consensus 211 dGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s---~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~-~l 286 (675)
T KOG0212|consen 211 DGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSS---MDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRD-LL 286 (675)
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccc---cCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcc-hh
Confidence 7788889999999987665555554321 1111 112257788999999999999988877676664433221 11
Q ss_pred HHhcCChHHHHHHhhhcccccCChhHHHHHHHH---HHHHhcCChHhHHHHHHc-CChHHHHHhhCCCCHHHHHHHHHHH
Q psy12605 363 VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA---LTNIASGTSAQTQEVVAA-GAVPLFLRLLMSPHSNVCEQAVWAL 438 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~---L~~l~~~~~~~~~~l~~~-g~i~~Lv~lL~~~~~~v~~~a~~~L 438 (845)
..-+|++..++.++.+.. ...++..+... +..+++.. ..... ++. ..+..+.+++.++..+.|..++.-+
T Consensus 287 ~~~s~il~~iLpc~s~~e----~~~i~~~a~~~n~~l~~l~s~~-~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi 360 (675)
T KOG0212|consen 287 LYLSGILTAILPCLSDTE----EMSIKEYAQMVNGLLLKLVSSE-RLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWI 360 (675)
T ss_pred hhhhhhhhhcccCCCCCc----cccHHHHHHHHHHHHHHHHhhh-hhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 223566677777776541 22233333222 22233211 11111 333 3578899999999999999888777
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhc
Q psy12605 439 GNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 509 (845)
Q Consensus 439 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~ 509 (845)
..+-...+. .-.......++.|++-|.+.++ ++.......++++|.....+ ...+++..|..++.
T Consensus 361 ~~l~~~~p~-ql~~h~~~if~tLL~tLsd~sd-~vvl~~L~lla~i~~s~~~~----~~~~fl~sLL~~f~ 425 (675)
T KOG0212|consen 361 ILLYHKAPG-QLLVHNDSIFLTLLKTLSDRSD-EVVLLALSLLASICSSSNSP----NLRKFLLSLLEMFK 425 (675)
T ss_pred HHHHhhCcc-hhhhhccHHHHHHHHhhcCchh-HHHHHHHHHHHHHhcCcccc----cHHHHHHHHHHHHh
Confidence 666554332 1122234466777777765554 77888888999999876432 22444444444444
|
|
| >KOG1058|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0035 Score=69.78 Aligned_cols=375 Identities=14% Similarity=0.154 Sum_probs=218.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-Ch--hhH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG-TS--AQT 124 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-~~--~~~ 124 (845)
++. +.|.+++.+.+..|+..+..++.+++.-+ +++-.++...-.+.+.+++..- ...+.+.-. ++ ...
T Consensus 24 ~ik-~~Lek~~~~~KIeamK~ii~~mlnGe~~p-------~Llm~IiRfvlps~~~elKKLl-y~ywE~vPKt~~dgkl~ 94 (948)
T KOG1058|consen 24 EIK-EKLEKGDDEVKIEAMKKIIALMLNGEDLP-------SLLMTIIRFVLPSRNHELKKLL-YYYWELVPKTDSDGKLL 94 (948)
T ss_pred HHH-HHHhcCChHHHHHHHHHHHHHHHcCCCch-------HHHHHHhheeeccCchHHHHHH-HHHHHHccccCCCcccH
Confidence 455 78899999999999999888877765421 1233344443245565666543 444444422 11 122
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
..++= +...+-+=|++|++-+|-..++.|+.+= .++.-+. .+|.+...|.+. +.-+|++|+-++..+.+.
T Consensus 95 ~EMIL--vcna~RkDLQHPNEyiRG~TLRFLckLk--E~ELlep-----l~p~IracleHr-hsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 95 HEMIL--VCNAYRKDLQHPNEYIRGSTLRFLCKLK--EPELLEP-----LMPSIRACLEHR-HSYVRRNAILAIFSIYKN 164 (948)
T ss_pred HHHHH--HHHHHhhhccCchHhhcchhhhhhhhcC--cHHHhhh-----hHHHHHHHHhCc-chhhhhhhheeehhHHhh
Confidence 22221 3445556788999999999999999983 3444333 467788888877 558999999998888775
Q ss_pred CCCCCChhHHhhHHHHHHhhc-ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 205 KDPPPSMSTIIELLPALNILI-HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
.+. ....+-..+-..+ ...|+. .+.+|+-.|... +++..-..
T Consensus 165 ~~~-----L~pDapeLi~~fL~~e~Dps-------------------------CkRNAFi~L~~~---D~ErAl~Y---- 207 (948)
T KOG1058|consen 165 FEH-----LIPDAPELIESFLLTEQDPS-------------------------CKRNAFLMLFTT---DPERALNY---- 207 (948)
T ss_pred hhh-----hcCChHHHHHHHHHhccCch-------------------------hHHHHHHHHHhc---CHHHHHHH----
Confidence 311 0112222222333 345666 666666555432 22211111
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+...+.-+.+-++..+...+..|...+..++..+. ..+..+..+|.+.++.++-+|+.+|..++.. +...+.
T Consensus 208 -l~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~-----~~i~~i~~lL~stssaV~fEaa~tlv~lS~~-p~alk~- 279 (948)
T KOG1058|consen 208 -LLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKA-----RYIRCIYNLLSSTSSAVIFEAAGTLVTLSND-PTALKA- 279 (948)
T ss_pred -HHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhh-----HHHHHHHHHHhcCCchhhhhhcceEEEccCC-HHHHHH-
Confidence 11111122333566777888888888876655444 3567799999888999999999998888443 333222
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
....++.++.+. .+-.++.-..--|..+...+... -.|.+--+++.|++++-+++..++.....++.
T Consensus 280 ----Aa~~~i~l~~ke----sdnnvklIvldrl~~l~~~~~~i-----l~~l~mDvLrvLss~dldvr~Ktldi~ldLvs 346 (948)
T KOG1058|consen 280 ----AASTYIDLLVKE----SDNNVKLIVLDRLSELKALHEKI-----LQGLIMDVLRVLSSPDLDVRSKTLDIALDLVS 346 (948)
T ss_pred ----HHHHHHHHHHhc----cCcchhhhhHHHHHHHhhhhHHH-----HHHHHHHHHHHcCcccccHHHHHHHHHHhhhh
Confidence 234556666554 24445544444444443222211 12456668889999999999999988777765
Q ss_pred CChHHHHHHHhCCChHHHHhccC----------CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCCh
Q psy12605 444 DGPQLRDYVINMGVVPPLLSFIK----------PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 513 (845)
Q Consensus 444 ~~~~~~~~l~~~g~l~~L~~ll~----------~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~ 513 (845)
... +..++.+|+ .++..+.++..+.++.-.+-..+ +.-...++.+...+.+.++
T Consensus 347 srN-----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp-----~~aatvV~~ll~fisD~N~ 410 (948)
T KOG1058|consen 347 SRN-----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFP-----EVAATVVSLLLDFISDSNE 410 (948)
T ss_pred hcc-----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcCh-----HHHHHHHHHHHHHhccCCH
Confidence 321 222333332 22234556666667666554442 2334566666666655554
Q ss_pred hH
Q psy12605 514 SV 515 (845)
Q Consensus 514 ~v 515 (845)
..
T Consensus 411 ~a 412 (948)
T KOG1058|consen 411 AA 412 (948)
T ss_pred HH
Confidence 43
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0012 Score=71.51 Aligned_cols=214 Identities=23% Similarity=0.267 Sum_probs=134.7
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..++.++ ..+.+.++..+..|+..+..+-.. -.+|.|..+| .+.++.+|..|+.+|+.+-. +
T Consensus 43 ~~~~~~~-~~l~~~~~~vr~~aa~~l~~~~~~------------~av~~l~~~l-~d~~~~vr~~a~~aLg~~~~--~-- 104 (335)
T COG1413 43 EAADELL-KLLEDEDLLVRLSAAVALGELGSE------------EAVPLLRELL-SDEDPRVRDAAADALGELGD--P-- 104 (335)
T ss_pred hhHHHHH-HHHcCCCHHHHHHHHHHHhhhchH------------HHHHHHHHHh-cCCCHHHHHHHHHHHHccCC--h--
Confidence 3566667 788888899999998887654221 1599999999 57788999999998888853 2
Q ss_pred HHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCC-----------HHHH
Q psy12605 124 TQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP-----------ISFL 191 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~-----------~~~~ 191 (845)
..++.|+.+|+ +++..++..|.++|+.+-... .+.+++..+..... ..++
T Consensus 105 -------~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~~-----------a~~~l~~~l~~~~~~~a~~~~~~~~~~~r 166 (335)
T COG1413 105 -------EAVPPLVELLENDENEGVRAAAARALGKLGDER-----------ALDPLLEALQDEDSGSAAAALDAALLDVR 166 (335)
T ss_pred -------hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCchh-----------hhHHHHHHhccchhhhhhhhccchHHHHH
Confidence 37899999999 589999999999999996332 26677777766531 1233
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC
Q psy12605 192 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG 271 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 271 (845)
..+...+..+-. ...++.+..++.+.+.. ++..+..+|..+...
T Consensus 167 ~~a~~~l~~~~~-----------~~~~~~l~~~l~~~~~~-------------------------vr~~Aa~aL~~~~~~ 210 (335)
T COG1413 167 AAAAEALGELGD-----------PEAIPLLIELLEDEDAD-------------------------VRRAAASALGQLGSE 210 (335)
T ss_pred HHHHHHHHHcCC-----------hhhhHHHHHHHhCchHH-------------------------HHHHHHHHHHHhhcc
Confidence 334444433321 22344455555555444 556666666554433
Q ss_pred ChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHH
Q psy12605 272 GNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFL 349 (845)
Q Consensus 272 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L 349 (845)
. ..+...+...+.+++..++..++..++.+-.. ...+.+...+.+.+..++..+...+
T Consensus 211 ~---------~~~~~~l~~~~~~~~~~vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~~~~~~~~~~~~~ 268 (335)
T COG1413 211 N---------VEAADLLVKALSDESLEVRKAALLALGEIGDE-----------EAVDALAKALEDEDVILALLAAAAL 268 (335)
T ss_pred h---------hhHHHHHHHHhcCCCHHHHHHHHHHhcccCcc-----------hhHHHHHHHHhccchHHHHHHHHHh
Confidence 2 13345556666666667777776666665221 1334455555555544444443333
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.1 Score=65.11 Aligned_cols=359 Identities=18% Similarity=0.168 Sum_probs=197.6
Q ss_pred HHHHHHhh-ccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 90 LPVLVECL-ERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 90 i~~Lv~lL-~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
+..|+.-+ +..++++.+..+...-.-++.. ...+..+ +..+|..++.-++. ++..-..+++..|...-.+....+.
T Consensus 165 ~~lllNafSKw~~~~~c~~aa~~la~~~~~~-d~~~~~~-~~q~ia~~lNa~sKWp~~~~c~~aa~~la~~l~~~~~l~~ 242 (2710)
T PRK14707 165 ISLALNAFSKWSDNPDCQAVAPRFAALVASD-DRLRSAM-DAQGVATVLNALCKWPDTPDCGNAVSALAERLADESRLRN 242 (2710)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhcCC-hhhhccc-chHHHHHHHHHHhcCCCChhHHHHHHHHHHHHcCcHHHHH
Confidence 44455544 3346667776666666666654 3344434 44566666666655 4444455566655544434444554
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH-HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIV-NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
.+-.. .+-..++.|.+=.+....++++..+. .+..+..-.+. ..-...-..|..+.+-++..
T Consensus 243 ~~~~q-~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~a-l~~q~vanalNalSKwpd~~--------------- 305 (2710)
T PRK14707 243 ELKPQ-ELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKA-LDPINVTQALNALSKWADLP--------------- 305 (2710)
T ss_pred hCChH-HHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHh-cCHHHHHHHHhhhhcCCCch---------------
Confidence 44333 35556666655444455666555555 45443321111 11122333333344445555
Q ss_pred hHHhhhhhHHHHHHHHHHHH-HhhcCChhhHHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcC
Q psy12605 247 ISKILVSKMKILVDTVWALS-YLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~-~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
+-..+...|. .|.+ +.+..+.+ +.-.+...+..|+. ++..+...|..+|..-...++..++.+- .
T Consensus 306 ----------vc~~Aa~~la~rl~~-d~~l~~~~-~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~ 372 (2710)
T PRK14707 306 ----------VCAEAAIALAERLAD-DPELCKAL-NARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE-P 372 (2710)
T ss_pred ----------HHHHHHHHHHHHHhc-cHhhhhcc-chHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc-h
Confidence 3333333333 3443 44444333 44555556666643 5555666666666655555566666553 3
Q ss_pred CccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
.++..+++.+ +.++...-..|+..|..=..++.+..+.+-..|+ ..++..|..= .+..+...++..|.--..++
T Consensus 373 q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~v-an~lnalsKW----Pd~~~C~~aa~~lA~~la~d 447 (2710)
T PRK14707 373 QGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDPQGV-SNALNALAKW----PDLPICGQAVSALAGRLAHD 447 (2710)
T ss_pred hHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcchhhH-HHHHHHhhcC----CcchhHHHHHHHHHHHHhcc
Confidence 4555555555 5577777777777777765676776665544444 4444444432 36778888888888877888
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
.+.++.+--.+....|-.+-+=++..+...++..|..=..+.++.++.+.-.++...|-.+-+-.+.....+.+.|.-..
T Consensus 448 ~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~~a~~~q~~~~~L~aLSK~Pd~~~c~~A~~~lA~r 527 (2710)
T PRK14707 448 TELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLRKALKPQEVVIALHSLSKWPDTPICAEAASALAER 527 (2710)
T ss_pred HHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHHhhcCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence 88777666555444444444556777777777777766666666666655444444444433333444555666666665
Q ss_pred hh
Q psy12605 484 LC 485 (845)
Q Consensus 484 L~ 485 (845)
+.
T Consensus 528 l~ 529 (2710)
T PRK14707 528 VV 529 (2710)
T ss_pred hc
Confidence 55
|
|
| >COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00043 Score=74.80 Aligned_cols=267 Identities=15% Similarity=0.149 Sum_probs=161.4
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh--HHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL--RDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~--r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
.|..++++|+++.+.++++|+...+.|+.--..+ -+.+...|.| |.+-|....+ ++.-..+.+++.+.....-..
T Consensus 605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~yp-EvLgsil~Ai~~I~sv~~~~~ 681 (975)
T COG5181 605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGEDYP-EVLGSILKAICSIYSVHRFRS 681 (975)
T ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcccH-HHHHHHHHHHHHHhhhhcccc
Confidence 5777889999999999999999999887321111 1223344432 4556666544 455444444444333221111
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
-.....+++|.|...+++.... +..+....+..++...++.+..---..+.=-|+
T Consensus 682 mqpPi~~ilP~ltPILrnkh~K-------------------------v~~nti~lvg~I~~~~peyi~~rEWMRIcfeLv 736 (975)
T COG5181 682 MQPPISGILPSLTPILRNKHQK-------------------------VVANTIALVGTICMNSPEYIGVREWMRICFELV 736 (975)
T ss_pred cCCchhhccccccHhhhhhhHH-------------------------HhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHH
Confidence 1123578889888888876665 777777777777766665332211113444577
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
..|++.+.+++.+|..++|.++..-.. ..++..|++-|+..+...|....-+++-++...- --.++
T Consensus 737 d~Lks~nKeiRR~A~~tfG~Is~aiGP-------qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cg-------pfsVl 802 (975)
T COG5181 737 DSLKSWNKEIRRNATETFGCISRAIGP-------QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCG-------PFSVL 802 (975)
T ss_pred HHHHHhhHHHHHhhhhhhhhHHhhcCH-------HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcC-------chhhH
Confidence 888888999999999999999754222 2345556666665555544433333332211110 01245
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
|.|+.-... .+..+|.-...+++.+...-.+.....+ .-..|.|-..|.+.++--|..|...+..++-+++
T Consensus 803 P~lm~dY~T-----Pe~nVQnGvLkam~fmFeyig~~s~dYv-y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~ 873 (975)
T COG5181 803 PTLMSDYET-----PEANVQNGVLKAMCFMFEYIGQASLDYV-YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP 873 (975)
T ss_pred HHHHhcccC-----chhHHHHhHHHHHHHHHHHHHHHHHHHH-HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence 555444333 2567888788888777653322222111 2346777888889999999999999999987654
|
|
| >KOG1077|consensus | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.013 Score=64.91 Aligned_cols=416 Identities=14% Similarity=0.118 Sum_probs=214.5
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcC
Q psy12605 94 VECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 173 (845)
Q Consensus 94 v~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g 173 (845)
+.+|++...++ +.-.--++.-|-..+.+..+. ++..+.+=|.+.++....-|+.+++|+.+ .+.++.+..
T Consensus 80 V~LLss~kysE-KqIGYl~is~L~n~n~dl~kl-----vin~iknDL~srn~~fv~LAL~~I~niG~--re~~ea~~~-- 149 (938)
T KOG1077|consen 80 VNLLSSNKYSE-KQIGYLFISLLLNENSDLMKL-----VINSIKNDLSSRNPTFVCLALHCIANIGS--REMAEAFAD-- 149 (938)
T ss_pred HHHhhcCCccH-HHHhHHHHHHHHhcchHHHHH-----HHHHHHhhhhcCCcHHHHHHHHHHHhhcc--HhHHHHhhh--
Confidence 78886554444 222222333333333344333 45566777888899999999999999964 356665543
Q ss_pred ChhhHHhhhcC-CCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhH---HHHHHHhhhChhhHH
Q psy12605 174 VVPPLLSFIKP-DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI---YLWLSIIEKNPQISK 249 (845)
Q Consensus 174 ~i~~Lv~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~---~~~~~l~~~~~~~~~ 249 (845)
-|+ ++|.+ +...-++..|+-+|..|.+.. ++.....+....+++++.+.+-.+-. ..+.++...+|+..+
T Consensus 150 DI~---KlLvS~~~~~~vkqkaALclL~L~r~s---pDl~~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk 223 (938)
T KOG1077|consen 150 DIP---KLLVSGSSMDYVKQKAALCLLRLFRKS---PDLVNPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYK 223 (938)
T ss_pred hhH---HHHhCCcchHHHHHHHHHHHHHHHhcC---ccccChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHh
Confidence 244 44433 334567778888999998875 33444567788888999887755321 122344444443211
Q ss_pred hhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc--cCCchhhHHHHHHHHHHHhcCChh-hHHHHhcCCc
Q psy12605 250 ILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL--SHKEVKVQTASLRAVGNIVTGTDE-QTQVILNCDA 326 (845)
Q Consensus 250 ~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL--~~~~~~v~~~al~~L~nl~~~~~~-~~~~i~~~~~ 326 (845)
. ..--|..-|.++.... | .+ +.++. .-+.|-++...+++|.+.-...+. .+..+. ..
T Consensus 224 ~------~~~~avs~L~riv~~~----------~-t~-~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~--ev 283 (938)
T KOG1077|consen 224 T------CLPLAVSRLSRIVVVV----------G-TS-LQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLN--EV 283 (938)
T ss_pred h------hHHHHHHHHHHHHhhc----------c-cc-hhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHH--HH
Confidence 0 0111112222211100 0 00 01111 124566777777777776332222 222221 12
Q ss_pred cchhhHhhcC----Cc---hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 327 LSHFPALLTH----PK---EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 327 l~~L~~lL~~----~~---~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
+..++..... .+ ...+.+.+.-..+++.+.+..-+.+. ..+..|-+++.+ .+..+|.-|...++.+
T Consensus 284 l~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~--~~~~~Lg~fls~-----rE~NiRYLaLEsm~~L 356 (938)
T KOG1077|consen 284 LERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLS--RAVNQLGQFLSH-----RETNIRYLALESMCKL 356 (938)
T ss_pred HHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHH--HHHHHHHHHhhc-----ccccchhhhHHHHHHH
Confidence 2333333321 11 12222333333334333222212221 235566666666 3778899999888888
Q ss_pred hcCChHhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHH
Q psy12605 400 ASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVT 478 (845)
Q Consensus 400 ~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~ 478 (845)
++... ....+... .+.++..|+ ..+..+|..|+-.|..++..+ +.+. ++..|+++|...+. .+++..+
T Consensus 357 ~ss~~--s~davK~h-~d~Ii~sLkterDvSirrravDLLY~mcD~~-Nak~------IV~elLqYL~tAd~-sireeiv 425 (938)
T KOG1077|consen 357 ASSEF--SIDAVKKH-QDTIINSLKTERDVSIRRRAVDLLYAMCDVS-NAKQ------IVAELLQYLETADY-SIREEIV 425 (938)
T ss_pred Hhccc--hHHHHHHH-HHHHHHHhccccchHHHHHHHHHHHHHhchh-hHHH------HHHHHHHHHhhcch-HHHHHHH
Confidence 87522 22222222 677788888 778899999999999998643 2222 35567777765432 3444443
Q ss_pred HHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH---HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCc
Q psy12605 479 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW---LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPM 555 (845)
Q Consensus 479 ~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~---l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 555 (845)
--..-|+.... +++.. ++..+.+|++....-+.+..| +.+..++++.+. -.+++++++|..+.-..
T Consensus 426 lKvAILaEKyA--tDy~W---yVdviLqLiriagd~vsdeVW~RvvQiVvNnedlq~------yaak~~fe~Lq~~a~hE 494 (938)
T KOG1077|consen 426 LKVAILAEKYA--TDYSW---YVDVILQLIRIAGDYVSDEVWYRVVQIVVNNEDLQG------YAAKRLFEYLQKPACHE 494 (938)
T ss_pred HHHHHHHHHhc--CCcch---hHHHHHHHHHHhcccccHHHHHHhheeEecchhhhH------HHHHHHHHHHhhhHHHH
Confidence 33333443222 22222 233333444433322333345 334444554433 34667778777654332
Q ss_pred c---cccccccccccccCCChh
Q psy12605 556 S---CQKKQHSIYMCVSPGTDE 574 (845)
Q Consensus 556 ~---~~~~~l~~l~nl~~~~~~ 574 (845)
. +.+..+.-+||++.++++
T Consensus 495 ~mVKvggyiLGEfg~LIa~~pr 516 (938)
T KOG1077|consen 495 NMVKVGGYILGEFGNLIADDPR 516 (938)
T ss_pred HHHHhhhhhhhhhhhhhcCCCC
Confidence 1 223356677888777655
|
|
| >KOG0915|consensus | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.0014 Score=78.33 Aligned_cols=213 Identities=15% Similarity=0.212 Sum_probs=115.1
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCch
Q psy12605 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339 (845)
Q Consensus 260 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 339 (845)
.|+..+..++....+..+.. -..+||+|..+=-+|+..|+.+...++..+..++......... .+++-|+.-|.+..-
T Consensus 976 GaAfGf~~i~~~a~~kl~p~-l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n-eIl~eLL~~lt~kew 1053 (1702)
T KOG0915|consen 976 GAAFGFGAIAKQAGEKLEPY-LKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN-EILDELLVNLTSKEW 1053 (1702)
T ss_pred chhhchHHHHHHHHHhhhhH-HHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH-HHHHHHHHhccchhH
Confidence 34444555554433333332 1246777777778999999999999999998775332222221 355667777778888
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHh--cCChHHHHHHhhhcccccCChhHHHHH---HHHHHHHhcCChHhHHHHHHcC
Q psy12605 340 KICKEAVWFLSNITAGNQAQVQAVID--AGLLPKIIANLQKVGRIVLRPNLQFEA---AWALTNIASGTSAQTQEVVAAG 414 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~Lv~lL~~~~~~~~~~~v~~~a---~~~L~~l~~~~~~~~~~l~~~g 414 (845)
.+|+.+|.+|..+..+.+.. .+.+ ..+...+++.+.+- ...+|..| +.+++.++.
T Consensus 1054 RVReasclAL~dLl~g~~~~--~~~e~lpelw~~~fRvmDDI-----KEsVR~aa~~~~~~lsKl~v------------- 1113 (1702)
T KOG0915|consen 1054 RVREASCLALADLLQGRPFD--QVKEKLPELWEAAFRVMDDI-----KESVREAADKAARALSKLCV------------- 1113 (1702)
T ss_pred HHHHHHHHHHHHHHcCCChH--HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHh-------------
Confidence 99999999999998775432 1211 12233333333331 23444443 333333321
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 494 (845)
Q Consensus 415 ~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~ 494 (845)
++.+..+.. .+-.++.++ -..+++.|++ +.-.++++.+..++..|....+ ..-.
T Consensus 1114 ------r~~d~~~~~---~~~~~l~~i-------LPfLl~~gim---------s~v~evr~~si~tl~dl~Kssg-~~lk 1167 (1702)
T KOG0915|consen 1114 ------RICDVTNGA---KGKEALDII-------LPFLLDEGIM---------SKVNEVRRFSIGTLMDLAKSSG-KELK 1167 (1702)
T ss_pred ------hhcccCCcc---cHHHHHHHH-------HHHHhccCcc---------cchHHHHHHHHHHHHHHHHhch-hhhc
Confidence 111111100 000000000 0111222221 2235778888899999988663 2223
Q ss_pred hHHHhHHHHHHHhhcCCChhHHHHHH
Q psy12605 495 STIIELLPALNILIHHHDTSVSIYLW 520 (845)
Q Consensus 495 ~~~~~~l~~l~~ll~~~d~~v~~~~~ 520 (845)
......+|.|...+...++.|..|+.
T Consensus 1168 P~~~~LIp~ll~~~s~lE~~vLnYls 1193 (1702)
T KOG0915|consen 1168 PHFPKLIPLLLNAYSELEPQVLNYLS 1193 (1702)
T ss_pred chhhHHHHHHHHHccccchHHHHHHH
Confidence 44456677777777777888877643
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0049 Score=66.42 Aligned_cols=303 Identities=14% Similarity=0.120 Sum_probs=187.8
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCC-CCHHHHHHHHHHHHHhhcCCCCCCChhHH
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTI 214 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 214 (845)
+..++-+++.+++..+.++++.+..+. +.-+.+.+.+.--.++..|..+ ....-|++|...+..+..-.+.... .-
T Consensus 30 i~~~lL~~~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~--~~ 106 (371)
T PF14664_consen 30 IQCMLLSDSKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKE--IP 106 (371)
T ss_pred HHHHHCCCcHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCccc--CC
Confidence 333444455999999999999999664 5566666666444555666543 3456778899999988876432222 24
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH 294 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 294 (845)
.+.+..++.+..+++.. .+..|+.+|+.++-.+++ .+..+|++..++..+.+
T Consensus 107 ~~vvralvaiae~~~D~-------------------------lr~~cletL~El~l~~P~---lv~~~gG~~~L~~~l~d 158 (371)
T PF14664_consen 107 RGVVRALVAIAEHEDDR-------------------------LRRICLETLCELALLNPE---LVAECGGIRVLLRALID 158 (371)
T ss_pred HHHHHHHHHHHhCCchH-------------------------HHHHHHHHHHHHHhhCHH---HHHHcCCHHHHHHHHHh
Confidence 57788888888887777 888899999999887764 56788999999999977
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC-------ch--hhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP-------KE--KICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~-------~~--~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
+..++....+.++-.+.. .+..++.+...--+..++.-+.+. +. +.-..+..++..+...-+-..-.-.+
T Consensus 159 ~~~~~~~~l~~~lL~lLd-~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~ 237 (371)
T PF14664_consen 159 GSFSISESLLDTLLYLLD-SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMN 237 (371)
T ss_pred ccHhHHHHHHHHHHHHhC-CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecC
Confidence 666688888888888854 355566555443345555544332 22 12334444555543332222111112
Q ss_pred c-CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC-ChHhH------HHHHHcCChHHHHHhh---CC---------
Q psy12605 366 A-GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG-TSAQT------QEVVAAGAVPLFLRLL---MS--------- 425 (845)
Q Consensus 366 ~-~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~------~~l~~~g~i~~Lv~lL---~~--------- 425 (845)
. .++..|+..|..+ +++++......+..+..- .+.+. ......|-...-.++- ..
T Consensus 238 ~~~~lksLv~~L~~p-----~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~ 312 (371)
T PF14664_consen 238 DFRGLKSLVDSLRLP-----NPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS 312 (371)
T ss_pred CchHHHHHHHHHcCC-----CHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc
Confidence 1 4688888888774 678888888888887642 22111 1122222210001111 00
Q ss_pred -CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 426 -PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 426 -~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
...++..+-... .-..+.++|.++.|+++.....+..+.+.+...++.+.
T Consensus 313 ~~~~~l~~~y~aL----------ll~ili~~gL~~~L~~li~~~~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 313 SKRPNLVNHYLAL----------LLAILIEAGLLEALVELIESSEDSSLSRKATLLLGELL 363 (371)
T ss_pred cccccHHHHHHHH----------HHHHHHHcChHHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 111122111111 22356789999999999998877778888877777654
|
|
| >KOG4646|consensus | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=62.77 Aligned_cols=115 Identities=14% Similarity=0.133 Sum_probs=98.7
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
+++..||.-.....+.+-+.+...-|.|++.+ |-+-..+.+.+++..++..|..+++.+.+.++..|+|+|.+ +.+.+
T Consensus 16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYD-P~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d-~~n~~ 93 (173)
T KOG4646|consen 16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYD-PINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLD-KTNAK 93 (173)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhccC-cchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccC-hHHHH
Confidence 45666776665567788899999999999975 66777888999999999999999999999999999999966 67999
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
.|.+.+++|.++..++++ +......++.++..|+-+.
T Consensus 94 ~I~ea~g~plii~~lssp-~e~tv~sa~~~l~~l~~~~ 130 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSP-PEITVHSAALFLQLLEFGE 130 (173)
T ss_pred HHHHhcCCceEEeecCCC-hHHHHHHHHHHHHHhcCcc
Confidence 999999999999999887 4567778888888888765
|
|
| >COG1413 FOG: HEAT repeat [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0014 Score=70.88 Aligned_cols=264 Identities=24% Similarity=0.267 Sum_probs=179.1
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
..++.+++++. +.++.+|..|++.+..+... -++|.+..++.+.++.++..|+.+|+.+-...
T Consensus 43 ~~~~~~~~~l~-~~~~~vr~~aa~~l~~~~~~-----------~av~~l~~~l~d~~~~vr~~a~~aLg~~~~~~----- 105 (335)
T COG1413 43 EAADELLKLLE-DEDLLVRLSAAVALGELGSE-----------EAVPLLRELLSDEDPRVRDAAADALGELGDPE----- 105 (335)
T ss_pred hhHHHHHHHHc-CCCHHHHHHHHHHHhhhchH-----------HHHHHHHHHhcCCCHHHHHHHHHHHHccCChh-----
Confidence 36888999994 55789999999998887642 38999999999999999999999999985321
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~ 247 (845)
.++.++.++..+.+..++..+.++|..+-.. ..+..+...+.+..... ++... .+..
T Consensus 106 ------a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~~~~~---a~~~~---~~~~ 162 (335)
T COG1413 106 ------AVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDEDSGS---AAAAL---DAAL 162 (335)
T ss_pred ------HHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccchhhh---hhhhc---cchH
Confidence 4788888888655778999999999886532 23566666666655331 00000 0000
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
. .++..+...+..+ -+...++.+..++.++...++..|..+|+.+...+ ..+.
T Consensus 163 ~-------~~r~~a~~~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~---------~~~~ 215 (335)
T COG1413 163 L-------DVRAAAAEALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN---------VEAA 215 (335)
T ss_pred H-------HHHHHHHHHHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch---------hhHH
Confidence 0 0333344433322 23356778889998888899999999999987553 2355
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT 407 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (845)
+.+...+.+.+..+|..++..|+.+-.. ..++.++..+.+. +..++..+...+... .
T Consensus 216 ~~l~~~~~~~~~~vr~~~~~~l~~~~~~-----------~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~--~----- 272 (335)
T COG1413 216 DLLVKALSDESLEVRKAALLALGEIGDE-----------EAVDALAKALEDE-----DVILALLAAAALGAL--D----- 272 (335)
T ss_pred HHHHHHhcCCCHHHHHHHHHHhcccCcc-----------hhHHHHHHHHhcc-----chHHHHHHHHHhccc--C-----
Confidence 7788888999999999999999887222 2345666666653 445554444444311 0
Q ss_pred HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 408 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 408 ~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
-......+...+.+....++..+...+..+....
T Consensus 273 ----~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~ 306 (335)
T COG1413 273 ----LAEAALPLLLLLIDEANAVRLEAALALGQIGQEK 306 (335)
T ss_pred ----chhhHHHHHHHhhcchhhHHHHHHHHHHhhcccc
Confidence 0123455666777777888888888887776544
|
|
| >PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0026 Score=68.51 Aligned_cols=317 Identities=14% Similarity=0.125 Sum_probs=188.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 47 DMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 47 ~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.+. .++-+++.+++-.+.+.+|+++... ...+.+.+.++=-.++.-|..+ .+...|.+|....+.+.... +..+
T Consensus 28 ~~i~-~~lL~~~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~-~~~~ 103 (371)
T PF14664_consen 28 ERIQ-CMLLSDSKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIK-KGPK 103 (371)
T ss_pred HHHH-HHHCCCcHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhc-CCcc
Confidence 3444 4555666889999999999998754 3466777777655566666443 34567889999988887541 1111
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
.+..|.+..++.+.+++++.++..|+.+|+.++-.+| +.+..+|++..+++.+.++.. ++....+.++..+...+
T Consensus 104 -~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P---~lv~~~gG~~~L~~~l~d~~~-~~~~~l~~~lL~lLd~p 178 (371)
T PF14664_consen 104 -EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP---ELVAECGGIRVLLRALIDGSF-SISESLLDTLLYLLDSP 178 (371)
T ss_pred -cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH---HHHHHcCCHHHHHHHHHhccH-hHHHHHHHHHHHHhCCc
Confidence 2345788999999999999999999999999997766 567789999999999987533 47788888888888776
Q ss_pred CCCCCh---hHHhhHHHHHHhhc---ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 206 DPPPSM---STIIELLPALNILI---HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 206 ~~~~~~---~~~~~~l~~L~~ll---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
...+-. ...+..+..+...- ..++.+ + +-...+..++..+-+.-+...-.-
T Consensus 179 ~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~---------------~--------~~l~~s~~ai~~~LrsW~GLl~l~ 235 (371)
T PF14664_consen 179 RTRKYLRPGFDLESLLAPFTDFHYRKIKDDRE---------------L--------ERLQASAKAISTLLRSWPGLLYLS 235 (371)
T ss_pred chhhhhcCCccHHHHHHhhhhhhccccccchH---------------H--------HHHHHHHHHHHHHHhcCCceeeee
Confidence 443311 11122222222220 001110 0 023344444544433333222222
Q ss_pred Hhc-CchhhHHhhccCCchhhHHHHHHHHHHHhcCC-hhhHHHH------hcCCccchhhHhh---cCCchhhHHHHHHH
Q psy12605 280 IDS-GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT-DEQTQVI------LNCDALSHFPALL---THPKEKICKEAVWF 348 (845)
Q Consensus 280 ~~~-g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~i------~~~~~l~~L~~lL---~~~~~~~~~~a~~~ 348 (845)
.+. ..++.|+..|..+.++++...+..+..+..-. +...... ...|-...-.++- ........... ..
T Consensus 236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~-~~ 314 (371)
T PF14664_consen 236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRS-SK 314 (371)
T ss_pred cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccc-cc
Confidence 122 56788999999999999999999999986422 2111111 1111110001111 00000000000 00
Q ss_pred HHHhhcCCh-HHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 349 LSNITAGNQ-AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 349 L~nl~~~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
=.++..+.. -....+++.|+++.|+++.... .++.+...|...|+.+.
T Consensus 315 ~~~l~~~y~aLll~ili~~gL~~~L~~li~~~----~d~~l~~KAtlLL~elL 363 (371)
T PF14664_consen 315 RPNLVNHYLALLLAILIEAGLLEALVELIESS----EDSSLSRKATLLLGELL 363 (371)
T ss_pred cccHHHHHHHHHHHHHHHcChHHHHHHHHhcC----CCchHHHHHHHHHHHHH
Confidence 001111101 1113357899999999999986 47888888988888764
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.02 Score=62.03 Aligned_cols=253 Identities=11% Similarity=0.024 Sum_probs=122.4
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
..-.+.+++++.++.++.....++-.++.-.++.- + +...+++=++...+..++..|+..|.....+..
T Consensus 66 lff~i~KlFQhkd~~Lrq~VY~aIkelS~~tedvl---m---~tssiMkD~~~g~~~~~kp~AiRsL~~Vid~~t----- 134 (898)
T COG5240 66 LFFAILKLFQHKDLYLRQCVYSAIKELSKLTEDVL---M---GTSSIMKDLNGGVPDDVKPMAIRSLFSVIDGET----- 134 (898)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHhhcchhhh---H---HHHHHHHhhccCCccccccHHHHHHHHhcCcch-----
Confidence 34456788888999998888888888876544322 1 234444445555555667777777766554331
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh--cCchhhHH
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID--SGVVPSLI 289 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv 289 (845)
...+-..|.+.+-++.+. +...|+..-.+|--.+.+..+...+ ..++.-+-
T Consensus 135 --v~~~er~l~~a~Vs~~~a-------------------------~~saalv~aYhLlp~~~~~~~rw~ne~qeav~~l~ 187 (898)
T COG5240 135 --VYDFERYLNQAFVSTSMA-------------------------RRSAALVVAYHLLPNNFNQTKRWLNETQEAVLDLK 187 (898)
T ss_pred --hhhHHHHhhhhccccchh-------------------------hhhhHHHHhhhhccccHHHHHHHHHHHHHHHhhHh
Confidence 011111222222233222 2223322222232222221111100 01111111
Q ss_pred hhc---------cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc----hhhHHHHHHHHHHhhcCC
Q psy12605 290 PLL---------SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK----EKICKEAVWFLSNITAGN 356 (845)
Q Consensus 290 ~lL---------~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~ 356 (845)
+.= -..++-.+..|++.|..+-..+.. +.-.+++++.... .........+...+...+
T Consensus 188 q~p~~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkm---------a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n 258 (898)
T COG5240 188 QFPNQHGNEGYEPNGNPISQYHALGLLYQSKRTDKM---------AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN 258 (898)
T ss_pred hCcCccCCcccCCCCChHHHHHHHHHHHHHhcccHH---------HHHHHHHHhhcccccccchhheehHHHHHHHHHhC
Confidence 110 012234567788888877543221 1122344443321 111111122233332333
Q ss_pred hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC--hHhHHHHHHcCChHHHHHhhCCCCHHHHHHH
Q psy12605 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT--SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQA 434 (845)
Q Consensus 357 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a 434 (845)
++...+ ..|.|-.++.+. -..+..+++.+++.++..+ ++... ..+..|-.+|.++....|-.|
T Consensus 259 ~q~~~q-----~rpfL~~wls~k-----~emV~lE~Ar~v~~~~~~nv~~~~~~-----~~vs~L~~fL~s~rv~~rFsA 323 (898)
T COG5240 259 SQALLQ-----LRPFLNSWLSDK-----FEMVFLEAARAVCALSEENVGSQFVD-----QTVSSLRTFLKSTRVVLRFSA 323 (898)
T ss_pred hHHHHH-----HHHHHHHHhcCc-----chhhhHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHHhcchHHHHHHH
Confidence 332222 234555555542 4678888998888877532 11111 245667777888888888888
Q ss_pred HHHHHHhhcCCh
Q psy12605 435 VWALGNIIGDGP 446 (845)
Q Consensus 435 ~~~L~nl~~~~~ 446 (845)
++.|..++...|
T Consensus 324 ~Riln~lam~~P 335 (898)
T COG5240 324 MRILNQLAMKYP 335 (898)
T ss_pred HHHHHHHHhhCC
Confidence 888888886554
|
|
| >KOG2973|consensus | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0025 Score=63.79 Aligned_cols=302 Identities=16% Similarity=0.176 Sum_probs=172.8
Q ss_pred HHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHH--HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 91 PVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV--AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 91 ~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~--~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
--++++| ++.+|.+|..|...+..+... ..+.+. +.-.++.+.+++....+ .+.|+.+|.|++.+ +..|+.
T Consensus 6 ~elv~ll-~~~sP~v~~~AV~~l~~lt~~---~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~-~~l~~~ 78 (353)
T KOG2973|consen 6 VELVELL-HSLSPPVRKAAVEHLLGLTGR---GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQK-EELRKK 78 (353)
T ss_pred HHHHHHh-ccCChHHHHHHHHHHhhcccc---chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhh-HHHHHH
Confidence 3568888 678999999999988888754 222222 23478889999988877 78999999999965 568888
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcc-cCCchhhHHHHHHHhhhChhh
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH-HHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~~~~~~ 247 (845)
+.+. .+..++..+-++.. .+-..++..|+|+++..+.... +..-+. +.+ ...+.+....+..+-.
T Consensus 79 ll~~-~~k~l~~~~~~p~~-~lad~~cmlL~NLs~~~~~~~~----------ll~~~~~~~~-~~lm~l~~~~~d~~~n- 144 (353)
T KOG2973|consen 79 LLQD-LLKVLMDMLTDPQS-PLADLICMLLSNLSRDDDEVAA----------LLTNLTEKKD-SGLMRLARAFCDKSYN- 144 (353)
T ss_pred HHHH-HHHHHHHHhcCccc-chHHHHHHHHHHhccCchHHHH----------HHHhcccccc-cchHHHHHHHhCcccc-
Confidence 8876 66777777766633 5777889999999987632111 111111 001 1111111111110000
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch--hhHHhhccCCchhhHH-HHHHHHHHHhcCChhhHHHHhcC
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV--PSLIPLLSHKEVKVQT-ASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i--~~Lv~lL~~~~~~v~~-~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
.-.-..+.+..++++++.... +..+.+...+ +.+..+-. .+..+|. ..+++|.|+|.+...... +++.
T Consensus 145 ------~~a~f~ylA~vf~nls~~~~g-R~l~~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~~h~~-lL~e 215 (353)
T KOG2973|consen 145 ------AYAEFHYLAPVFANLSQFEAG-RKLLLEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAKLHEV-LLDE 215 (353)
T ss_pred ------cccchhHHHHHHHHHhhhhhh-hhHhcchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccchhHHH-Hhcc
Confidence 000223455556667665433 3444444422 23333333 4555554 567899999887544322 3322
Q ss_pred --CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 325 --DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 325 --~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
..+|.|+.-+..+. +. +..+ -..+|.=++++......+.++.++..-..++.-++..
T Consensus 216 ~~~lLp~iLlPlagpe-e~-------------sEEd-------m~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT 274 (353)
T KOG2973|consen 216 SINLLPAILLPLAGPE-EL-------------SEED-------MAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT 274 (353)
T ss_pred hHHHHHHHHhhcCCcc-cc-------------CHHH-------HhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh
Confidence 23333333332221 00 0011 1123443478875555557899999999998888864
Q ss_pred ChHhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcC
Q psy12605 403 TSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 403 ~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~ 444 (845)
. ..+..+.+.|+-+.+-.+=. .++++++..+-...--+...
T Consensus 275 ~-~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~Lv~~ 316 (353)
T KOG2973|consen 275 R-AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQMLVRL 316 (353)
T ss_pred h-HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHHHHhc
Confidence 3 45666777776666555444 35677777666555444443
|
|
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0095 Score=69.32 Aligned_cols=267 Identities=16% Similarity=0.119 Sum_probs=156.8
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
++++.|+..|++.+..++-.|+..++.++...| . .+.+ .+|..++++++...+......++-+|+.++...=- .
T Consensus 341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~-~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlL--l 414 (1133)
T KOG1943|consen 341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--P-ELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLL--L 414 (1133)
T ss_pred HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--H-HHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCc--c
Confidence 688899999999999999999999999998776 2 2222 24667777776665567777899999999986522 2
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCchhhHH
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVPSLI 289 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv 289 (845)
.......+|.+.+.+.-++...++ .. ...++..||..+..+++... ...+.+.+.=.-..|+
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~-------s~----------G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~ 477 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQH-------SV----------GQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLI 477 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhccc-------cc----------ccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHH
Confidence 223557778877766543322000 00 01155555544444444322 2122222221122334
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC---chhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP---KEKICKEAVWFLSNITAGNQAQVQAVIDA 366 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~---~~~~~~~a~~~L~nl~~~~~~~~~~l~~~ 366 (845)
..+-+++..+|.+|..++...... .|-+|.=+.+.++. .-..|.++...++.-.+..+.....+++.
T Consensus 478 ~AlFDrevncRRAAsAAlqE~VGR----------~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~ 547 (1133)
T KOG1943|consen 478 VALFDREVNCRRAASAALQENVGR----------QGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH 547 (1133)
T ss_pred HHhcCchhhHhHHHHHHHHHHhcc----------CCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH
Confidence 444677888999998888876532 12223223333322 22334444444443333333333333322
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
-+...+ .+ =+..+++.++++|.+++...++ ....+..+.++....+.+...+.-+..+.+.+..
T Consensus 548 L~t~Kv-----~H----Wd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la~~ev~~ 611 (1133)
T KOG1943|consen 548 LLTKKV-----CH----WDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLAAGEVIG 611 (1133)
T ss_pred HHhccc-----cc----ccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHHHHHHHH
Confidence 111111 11 2678999999999998765543 3345678888888889999888877777766654
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.79 E-value=5e-05 Score=63.91 Aligned_cols=88 Identities=25% Similarity=0.365 Sum_probs=71.9
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i 169 (845)
||.|++.|..++++.+|..|+++|+.+.. + .++|.|+++++++++.++..|+++|+.+..
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------- 60 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRIGD--------- 60 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC---------
Confidence 68899999668889999999999996532 2 369999999999999999999999999841
Q ss_pred HhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 170 ~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
..+++.|.+++.++.+..++..|+++|+
T Consensus 61 --~~~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 61 --PEAIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp --HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 1268889999988767677888888774
|
|
| >PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless | Back alignment and domain information |
|---|
Probab=97.76 E-value=5.2e-05 Score=53.06 Aligned_cols=41 Identities=41% Similarity=0.776 Sum_probs=37.9
Q ss_pred ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 403 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 403 ~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+++.++.+++.|+++.|+++|.+++++++..|+|+|+||+.
T Consensus 1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~ 41 (41)
T PF00514_consen 1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA 41 (41)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 35778899999999999999999999999999999999973
|
Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B .... |
| >KOG1943|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.024 Score=66.22 Aligned_cols=384 Identities=13% Similarity=0.116 Sum_probs=206.1
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
..+.-++.++ .++++.|..++..|++-+.++-+..+...++. ++...+.++...+++..-..|+-+|+.+|...
T Consensus 338 ivE~vie~Ll-s~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~rG 411 (1133)
T KOG1943|consen 338 IVEFVIEHLL-SALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELALRG 411 (1133)
T ss_pred HHHHHHHHHH-HhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHhcC
Confidence 3445567777 88999999999999999999877553222233 46666777755555667779999999998643
Q ss_pred hhhHHHHHHcCChHHHHHhhCC--------CChhHHHHHHHHHHHhcCCChh--hHHHHHhcCChhhHHhhhcCCCCHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMS--------PHSNVCEQAVWALGNIIGDGPQ--LRDYVINMGVVPPLLSFIKPDIPISF 190 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s--------~~~~v~~~a~~~L~nla~~~~~--~r~~i~~~g~i~~Lv~ll~~~~~~~~ 190 (845)
--.-..+. .++|.+++-|.- ....+|+.|+.+.+.++..... .+. +.+ .....|+-..--+.+..+
T Consensus 412 lLlps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l~-~L~s~LL~~AlFDrevnc 487 (1133)
T KOG1943|consen 412 LLLPSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VLQ-SLASALLIVALFDREVNC 487 (1133)
T ss_pred CcchHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HHH-HHHHHHHHHHhcCchhhH
Confidence 21111222 366777766642 2457899999999888754321 111 111 011222211122346789
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH-Hhh
Q psy12605 191 LRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS-YLT 269 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~-~l~ 269 (845)
|++|..++-.......+.+. +++.+ .....-... .+.++-..+. .++
T Consensus 488 RRAAsAAlqE~VGR~~n~p~------Gi~Li-s~~dy~sV~-------------------------~rsNcy~~l~~~ia 535 (1133)
T KOG1943|consen 488 RRAASAALQENVGRQGNFPH------GISLI-STIDYFSVT-------------------------NRSNCYLDLCVSIA 535 (1133)
T ss_pred hHHHHHHHHHHhccCCCCCC------chhhh-hhcchhhhh-------------------------hhhhHHHHHhHHHH
Confidence 99998888765543222211 11111 000000000 2222222221 112
Q ss_pred cCChhhHHHHHhcCchhhHHhh-ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHH
Q psy12605 270 DGGNDQIQMVIDSGVVPSLIPL-LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWF 348 (845)
Q Consensus 270 ~~~~~~~~~~~~~g~i~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 348 (845)
.. +...+. ++..++.- +.+-+..+++.+..+|..++...+. ......++.+++...+++...|..+..+
T Consensus 536 ~~-~~y~~~-----~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk----~~a~~~L~~lld~~ls~~~~~r~g~~la 605 (1133)
T KOG1943|consen 536 EF-SGYREP-----VFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPK----YLADYVLPPLLDSTLSKDASMRHGVFLA 605 (1133)
T ss_pred hh-hhHHHH-----HHHHHHhcccccccHHHHHHHHHHHHHHHHhhHH----hhcccchhhhhhhhcCCChHHhhhhHHH
Confidence 11 111122 22333322 4566889999999999998755332 3334678888888888887777766665
Q ss_pred HHHhhcCChHHH---HHHHh---cC---ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHH
Q psy12605 349 LSNITAGNQAQV---QAVID---AG---LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 419 (845)
Q Consensus 349 L~nl~~~~~~~~---~~l~~---~~---~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L 419 (845)
.+.+........ ..+.+ ++ .++.+..--...+ ...-.+...+..+..+...........+-.+.-..+
T Consensus 606 ~~ev~~~~~~l~~~~~~l~e~~i~~l~~ii~~~~~~~~~rg---~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll 682 (1133)
T KOG1943|consen 606 AGEVIGALRKLEPVIKGLDENRIAGLLSIIPPICDRYFYRG---QGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLL 682 (1133)
T ss_pred HHHHHHHhhhhhhhhhhhHHHHhhhhhhhccHHHHHHhccc---hHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHH
Confidence 555543222111 11111 11 2222222111111 122344455666666665665555566666666677
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC----CChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 420 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM----GVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 420 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~----g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
.+.+..++ .++..+.++++.++... ...+. ..+...+..+.+...+.+++-..-++.+++
T Consensus 683 ~~~l~~~n-~i~~~av~av~~l~s~y-----~~~d~~~~~~li~~~ls~~~~~~~~~~r~g~~lal~~lp 746 (1133)
T KOG1943|consen 683 AQNLTLPN-QIRDAAVSAVSDLVSTY-----VKADEGEEAPLITRYLSRLTKCSEERIRRGLILALGVLP 746 (1133)
T ss_pred HHhhcchH-HHHHHHHHHHHHHHHHH-----HhcCchhhhHHHHHHHHHhcCchHHHHHHHHHHHHccCc
Confidence 77775555 89999999999887521 01111 123344444444444444554555555554
|
|
| >KOG0211|consensus | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.012 Score=68.39 Aligned_cols=359 Identities=15% Similarity=0.135 Sum_probs=192.3
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc
Q psy12605 104 NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK 183 (845)
Q Consensus 104 ~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~ 183 (845)
..+..+..-+.+++..-.+.+. ...++|.+-..+ ....++...++.-++++.... ...+ .. +.+.+....+.
T Consensus 97 ~~r~~~~~~l~~~a~~~~~~~t---r~~lipf~~e~~-~~~dev~~~~a~~~~~~~~~v-~~~~-~~--~~ll~~le~l~ 168 (759)
T KOG0211|consen 97 QLRLNSGRKLSNLALALGVERT---RLELIPFLTEAE-DDEDEVLLDLAEQLGTFLPDV-GGPE-YA--HMLLPPLELLA 168 (759)
T ss_pred hhhhhhhccccchhhhcccchh---hhhhhhHHHHhc-cchhHHHHHHHHHhcccchhc-cchh-HH--HHhhHHHHhhh
Confidence 4455555666666542222222 234788888888 677788888888888887542 1111 11 11222222232
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHH
Q psy12605 184 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVW 263 (845)
Q Consensus 184 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~ 263 (845)
......++..++-.+...+..... . ......+|.+.++...+--+ .+..+|.
T Consensus 169 ~~eet~vr~k~ve~l~~v~~~~~~-~--~~~~~lv~l~~~l~~~d~~~-------------------------sr~sacg 220 (759)
T KOG0211|consen 169 TVEETGVREKAVESLLKVAVGLPK-E--KLREHLVPLLKRLATGDWFQ-------------------------SRLSACG 220 (759)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCh-H--HHHHHHHHHHHHccchhhhh-------------------------cchhhhh
Confidence 232445677788888777665421 1 12344555554444431111 3334555
Q ss_pred HHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHH
Q psy12605 264 ALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICK 343 (845)
Q Consensus 264 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~ 343 (845)
..........+ ..++....+..-++-.+..+.++.++..-+++++..-+ +.....+.++.+.++..+....+|.
T Consensus 221 lf~~~~~~~~~---~~vk~elr~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~~---~~~~~s~v~~~~~~L~~DdqdsVr~ 294 (759)
T KOG0211|consen 221 LFGKLYVSLPD---DAVKRELRPIVQSLCQDDTPMVRRAVASNLGNIAKVLE---SEIVKSEVLPTLIQLLRDDQDSVRE 294 (759)
T ss_pred hhHHhccCCCh---HHHHHHHHHHHHhhccccchhhHHHHHhhhHHHHHHHH---HHHHHhhccHHHhhhhhcchhhHHH
Confidence 55544433221 22344455566666678888999999999999975432 2555668899999999988889999
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh
Q psy12605 344 EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 423 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL 423 (845)
.|...+.++...-.... =....+.+.+++...+. ++.++.........+... ...........+....++
T Consensus 295 ~a~~~~~~l~~l~~~~~--d~~~~~~~~l~~~~~d~-----~~~v~~~~~~~~~~L~~~---~~~~~~~~~~~~~~~~l~ 364 (759)
T KOG0211|consen 295 AAVESLVSLLDLLDDDD--DVVKSLTESLVQAVEDG-----SWRVSYMVADKFSELSSA---VGPSATRTQLVPPVSNLL 364 (759)
T ss_pred HHHHHHHHHHHhcCCch--hhhhhhhHHHHHHhcCh-----hHHHHHHHhhhhhhHHHH---hccccCcccchhhHHHHh
Confidence 88887777643211110 12234667777777664 566666555444444321 000111123466677778
Q ss_pred CCCCHHHHHHHHHHHHHhhcC-ChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHH
Q psy12605 424 MSPHSNVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLP 502 (845)
Q Consensus 424 ~~~~~~v~~~a~~~L~nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~ 502 (845)
.+...+++...+.-...++.. +..+...+.....++.+-.+..+.. ..+....+..+.++ .+..+....+...+|
T Consensus 365 ~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~-~~vr~a~a~~~~~~---~p~~~k~~ti~~llp 440 (759)
T KOG0211|consen 365 KDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNA-LHVRSALASVITGL---SPILPKERTISELLP 440 (759)
T ss_pred cchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhccc-chHHHHHhcccccc---CccCCcCcCccccCh
Confidence 777777777666555555432 1111222223333444443333222 12222222222222 211222344455677
Q ss_pred HHHHhhcCCChhHHHH
Q psy12605 503 ALNILIHHHDTSVSIY 518 (845)
Q Consensus 503 ~l~~ll~~~d~~v~~~ 518 (845)
.+...+++.++.|+.+
T Consensus 441 ~~~~~l~de~~~V~ln 456 (759)
T KOG0211|consen 441 LLIGNLKDEDPIVRLN 456 (759)
T ss_pred hhhhhcchhhHHHHHh
Confidence 7777777777777654
|
|
| >KOG4646|consensus | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00069 Score=59.00 Aligned_cols=131 Identities=19% Similarity=0.137 Sum_probs=104.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+..+|-+.-+..+.+.+.+.+..|.++.... .+...+.+.++++..+..| ..++..+...+...|+|+|-+ +.+++
T Consensus 18 lq~LV~efq~tt~~eakeqv~ANLANFAYDP--~Nys~Lrql~vLdlFvdsl-~e~ne~LvefgIgglCNlC~d-~~n~~ 93 (173)
T KOG4646|consen 18 LQHLVDEFQTTTNIEAKEQVTANLANFAYDP--INYSHLRQLDVLDLFVDSL-EEQNELLVEFGIGGLCNLCLD-KTNAK 93 (173)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhccCc--chHHHHHHhhHHHHHHHHh-hcccHHHHHHhHHHHHhhccC-hHHHH
Confidence 4455523345667788888888887765432 4577888999999999999 577888999999999999964 78999
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHh
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ 180 (845)
.+++++++|.++..++++.+...-.|+.++..++......|+.+....++..+.+
T Consensus 94 ~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r 148 (173)
T KOG4646|consen 94 FIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR 148 (173)
T ss_pred HHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence 9999999999999999999999999999999999777667777765444444443
|
|
| >PRK14707 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.39 Score=60.29 Aligned_cols=404 Identities=16% Similarity=0.096 Sum_probs=211.4
Q ss_pred cHHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHH-HHhcCChh
Q psy12605 45 NLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALT-NIASGTSA 122 (845)
Q Consensus 45 ~i~~lv~~~l~~-~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~-~la~~~~~ 122 (845)
+|-.++ +.+.. +|.....+|+..|...+.... .....+-..|+-..|-.+-+..+.+. ...|+..|. .++. .+.
T Consensus 206 ~ia~~l-Na~sKWp~~~~c~~aa~~la~~l~~~~-~l~~~~~~q~va~~lN~lsKwp~~~~-C~~a~~~lA~rl~~-~~~ 281 (2710)
T PRK14707 206 GVATVL-NALCKWPDTPDCGNAVSALAERLADES-RLRNELKPQELGNALNALSKWADTPV-CAAAASALAERLVD-DPG 281 (2710)
T ss_pred HHHHHH-HHHhcCCCChhHHHHHHHHHHHHcCcH-HHHHhCChHHHHHHHHHHhcCCCchH-HHHHHHHHHHHHhh-hHH
Confidence 344444 44432 344445556666666655442 22333334455555555555444444 444444444 4553 355
Q ss_pred hHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHH-HHHh
Q psy12605 123 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWV-IVNL 201 (845)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~-L~~l 201 (845)
.++.+-..++-..|-.+-+=++..+...|+..|..=-.++++.++.+-.. .+...++.|++=.+..+.+.|+.. -..+
T Consensus 282 l~~al~~q~vanalNalSKwpd~~vc~~Aa~~la~rl~~d~~l~~~~~~~-~~~~~LNalsKWpd~~~C~~Aa~~LA~rl 360 (2710)
T PRK14707 282 LRKALDPINVTQALNALSKWADLPVCAEAAIALAERLADDPELCKALNAR-GLSTALNALSKWPDNPVCAAAVSALAERL 360 (2710)
T ss_pred HHHhcCHHHHHHHHhhhhcCCCchHHHHHHHHHHHHHhccHhhhhccchH-HHHHHHHHhhcCCCchhHHHHHHHHHHHh
Confidence 55555444444444444445677777777766665444667666544322 344555566543333455544444 4456
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
+.+.+..+.+. ..++-..|..+.+=++.. .-..++..|+.=...+.+..+.+ +
T Consensus 361 ~~d~~l~~~l~-~q~~a~~lNalsKWp~~~-------------------------~c~~aa~~LA~~l~~d~~l~~~~-~ 413 (2710)
T PRK14707 361 VADPELRKDLE-PQGVSSVLNALSKWPDTP-------------------------VCAAAASALAEHVVDDLELRKGL-D 413 (2710)
T ss_pred ccCHhhhcccc-hhHHHHHHhhhhcCCCch-------------------------HHHHHHHHHHHHhccChhhhhhc-c
Confidence 66554444332 344444454444445555 44445555544333455555555 5
Q ss_pred cCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 282 SGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 282 ~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
...+..++..| +=++..+...+...|.--..++.+.++.+--.++...|-.+-+.+|..+-.++...|..=..+.++..
T Consensus 414 ~Q~van~lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~LnalSKWPd~p~c~~aa~~La~~l~~~~~l~ 493 (2710)
T PRK14707 414 PQGVSNALNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQALDALSKWPDTPICGQTASALAARLAHERRLR 493 (2710)
T ss_pred hhhHHHHHHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHHHHHhhcCCCChhHHHHHHHHHHHhcccHHHH
Confidence 55555556666 44677788888888887777777766665544544444444466888888778777776556666654
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
+.+--.++...| ..|..-+ +.+.-...+.|+-..+... ....+.+...+....+-.+-+.++......++..|..
T Consensus 494 ~a~~~q~~~~~L-~aLSK~P---d~~~c~~A~~~lA~rl~~~-~~l~~~~~~~~~~~~lnalSKwp~s~~C~~A~~~iA~ 568 (2710)
T PRK14707 494 KALKPQEVVIAL-HSLSKWP---DTPICAEAASALAERVVDE-LQLRKAFDAHQVVNTLKALSKWPDKQLCAVAASGLAE 568 (2710)
T ss_pred hhcCHHHHHHHH-HHhhcCC---CcHHHHHHHHHHHHHhccc-hhhhhhhhhHHHHHHHHhhhcCCchhHHHHHHHHHHH
Confidence 444323333333 3333321 3344444455555555422 1122222222222333333345666677777777777
Q ss_pred hhcCChHHHHHHHhCCChHHHHhccCCCCC-hhHHHHHHHHHHHhhc
Q psy12605 441 IIGDGPQLRDYVINMGVVPPLLSFIKPDIP-ISFLRNVTWVIVNLCR 486 (845)
Q Consensus 441 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~-~~~~~~~~~~l~nL~~ 486 (845)
...+.+..+..+- .-.+..++..|+.-.+ ......+.|.-..+..
T Consensus 569 ~l~~~~~~~~~L~-aq~Vs~llNaLSKWP~~~aC~~Aa~~LA~~l~~ 614 (2710)
T PRK14707 569 RLADEPQLPKDLH-RQGVVIVLNALSKWPDTAVCAEAVNALAERLVD 614 (2710)
T ss_pred HhhcchhhHHhhh-hhHHHHHHHhhccCCCcHHHHHHHHHHHHHhcc
Confidence 6666666665554 3345666666654433 3444444554444443
|
|
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.015 Score=64.70 Aligned_cols=254 Identities=17% Similarity=0.099 Sum_probs=163.1
Q ss_pred HHHHHhcCCHHHHHHhh---------ccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC-----Chh
Q psy12605 81 IEALIHSGILPVLVECL---------ERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP-----HSN 146 (845)
Q Consensus 81 ~~~i~~~g~i~~Lv~lL---------~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~-----~~~ 146 (845)
.+.+.....+..|.++- ....++.+..+|+.||+|+...++..+..+++.|..+.++..|+.. +.+
T Consensus 15 ~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d 94 (446)
T PF10165_consen 15 LDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSD 94 (446)
T ss_pred chhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChh
Confidence 34444444555555554 3346778999999999999999899999999999999999999887 788
Q ss_pred HHHHHHHHHHHhcCCChhhHHHHHhc-CChhhHHhhhcC---------C-------CCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 147 VCEQAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFIKP---------D-------IPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 147 v~~~a~~~L~nla~~~~~~r~~i~~~-g~i~~Lv~ll~~---------~-------~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
+.-...+.|.-++...++.+..+++. +++..++..+.. . .+......+..++.|+........
T Consensus 95 ~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~ 174 (446)
T PF10165_consen 95 VEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSV 174 (446)
T ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCccc
Confidence 89999999999998888888887755 777777766521 0 133445567888888877664333
Q ss_pred C---hhHHhhHHHHHHhhc---ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhh--------
Q psy12605 210 S---MSTIIELLPALNILI---HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ-------- 275 (845)
Q Consensus 210 ~---~~~~~~~l~~L~~ll---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-------- 275 (845)
. ......++..+..++ ....+. ......+..+|.++--.....
T Consensus 175 ~~~~~~~~~~l~~il~~~l~~~~~~~~l-----------------------~~~~~~~in~L~nlpl~~~~~l~~~~~~~ 231 (446)
T PF10165_consen 175 PEEFSPSIPHLVSILRRLLPPPPSSPPL-----------------------DPPHSHAINALLNLPLECLDSLLSPKFQQ 231 (446)
T ss_pred chhhhHHHHHHHHHHHHHhccCCCCCcc-----------------------hhhHHHHHHHHhCCChHHHhhhhcccCCc
Confidence 2 222233444444442 111111 014455556665542111110
Q ss_pred ---HHHHHhcCchhhHHhhccC--------CchhhHHHHHHHHHHHhcCChhhHHHHhc----------------CCccc
Q psy12605 276 ---IQMVIDSGVVPSLIPLLSH--------KEVKVQTASLRAVGNIVTGTDEQTQVILN----------------CDALS 328 (845)
Q Consensus 276 ---~~~~~~~g~i~~Lv~lL~~--------~~~~v~~~al~~L~nl~~~~~~~~~~i~~----------------~~~l~ 328 (845)
.........+..|+.+|+. .-.....+.+.+|.+++..+...++.+.. ...-.
T Consensus 232 ~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~ 311 (446)
T PF10165_consen 232 SSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRS 311 (446)
T ss_pred ccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHH
Confidence 0001122456667777621 11357778888999998876665554432 12345
Q ss_pred hhhHhhcCCchhhHHHHHHHHHHhhcCCh
Q psy12605 329 HFPALLTHPKEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 329 ~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 357 (845)
.|++++.+..+.+|..+...|..+|..+.
T Consensus 312 rLlrLmt~~~~~~k~~vaellf~Lc~~d~ 340 (446)
T PF10165_consen 312 RLLRLMTSPDPQLKDAVAELLFVLCKEDA 340 (446)
T ss_pred HHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence 78888888888889888888888865543
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG1058|consensus | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.094 Score=58.97 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=118.8
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
..+|.+...|.+.+..||.+|.-++..+-...++ ++. .+-..+-..| ...|+..+++|...|... +++.
T Consensus 134 pl~p~IracleHrhsYVRrNAilaifsIyk~~~~----L~p-DapeLi~~fL~~e~DpsCkRNAFi~L~~~---D~Er-- 203 (948)
T KOG1058|consen 134 PLMPSIRACLEHRHSYVRRNAILAIFSIYKNFEH----LIP-DAPELIESFLLTEQDPSCKRNAFLMLFTT---DPER-- 203 (948)
T ss_pred hhHHHHHHHHhCcchhhhhhhheeehhHHhhhhh----hcC-ChHHHHHHHHHhccCchhHHHHHHHHHhc---CHHH--
Confidence 3456666777899999999999999988654222 111 1122233333 456888888888777764 2221
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
.+..|.....+-+. -++.++......+...+-.++... ...+..+..+|.++++.|+..|+.+|.++
T Consensus 204 ------Al~Yl~~~idqi~~--~~~~LqlViVE~Irkv~~~~p~~~-----~~~i~~i~~lL~stssaV~fEaa~tlv~l 270 (948)
T KOG1058|consen 204 ------ALNYLLSNIDQIPS--FNDSLQLVIVELIRKVCLANPAEK-----ARYIRCIYNLLSSTSSAVIFEAAGTLVTL 270 (948)
T ss_pred ------HHHHHHhhHhhccC--ccHHHHHHHHHHHHHHHhcCHHHh-----hHHHHHHHHHHhcCCchhhhhhcceEEEc
Confidence 12222222222110 134555555555555554444332 23567889999999999999999999999
Q ss_pred hcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH
Q psy12605 442 IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 520 (845)
Q Consensus 442 ~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~ 520 (845)
+.+....+.+ ...+++++...++-.++.-...-|..+.. .....+.+.+--+.+++.+.|-++..-++
T Consensus 271 S~~p~alk~A------a~~~i~l~~kesdnnvklIvldrl~~l~~-----~~~~il~~l~mDvLrvLss~dldvr~Ktl 338 (948)
T KOG1058|consen 271 SNDPTALKAA------ASTYIDLLVKESDNNVKLIVLDRLSELKA-----LHEKILQGLIMDVLRVLSSPDLDVRSKTL 338 (948)
T ss_pred cCCHHHHHHH------HHHHHHHHHhccCcchhhhhHHHHHHHhh-----hhHHHHHHHHHHHHHHcCcccccHHHHHH
Confidence 8776544432 34455555443332333332233333321 12245566666777888888888877655
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.064 Score=59.58 Aligned_cols=348 Identities=15% Similarity=0.183 Sum_probs=192.4
Q ss_pred HHHHHHHHcCCCh---HHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 47 DMLVVEAARKDNP---ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 47 ~~lv~~~l~~~~~---~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
|.++ +.|.+++. ......+..|..++... ...+.++- .++..|-..++...+.+....++.+|..+.....+.
T Consensus 2 p~ll-~~Lpd~~~~~~~~~~~~L~~l~~ls~~~--~i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~ 77 (415)
T PF12460_consen 2 PALL-ALLPDSDSSTDSNYERILEALAALSTSP--QILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQED 77 (415)
T ss_pred chHH-hhCCCCCCcchhHHHHHHHHHHHHHCCh--hHHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhcccc
Confidence 3455 66666554 55666788888776543 23333322 445555555543345667777788888776533222
Q ss_pred H-----HHHHHcCChHHHHHhhCCC-------ChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhc-------
Q psy12605 124 T-----QEVVAAGAVPLFLRLLMSP-------HSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIK------- 183 (845)
Q Consensus 124 ~-----~~i~~~g~i~~L~~lL~s~-------~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~------- 183 (845)
. ....+...+|.+.++.-.. ++.+-+.+...++.+....+. .++.+.+ .+..+..
T Consensus 78 ~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~~~~~~L~~~~~l~~~iv~~l~~~~q~~~~~-----~~~~lf~~~~~~~~ 152 (415)
T PF12460_consen 78 KQFEDNSWYFHRILVPRLFELALQASDQSSDLDDRVLELLSRLINLIVRSLSPEKQQEILD-----ELYSLFLSPKSFSP 152 (415)
T ss_pred cccchHHHHHHhHHHHHHHHHHHhhcccccccchHHHHHHHHHHHHHHHhCCHHHHHHHHH-----HHHHHHccccccCC
Confidence 2 2334445788888876332 245555566666655544332 2222222 2222111
Q ss_pred ----CC----CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCchhhHHHHHHHhhhChhhHHhhhhh
Q psy12605 184 ----PD----IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTSVSIYLWLSIIEKNPQISKILVSK 254 (845)
Q Consensus 184 ----~~----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (845)
.. .+.....-..++++.+-++. ........+..+..+..+ .++.
T Consensus 153 ~~~~~~~~~~~~~~~~~l~~~il~~l~~~~----~~~~~~~ll~~l~~~~~~~~~~~----------------------- 205 (415)
T PF12460_consen 153 FQPSSSTISEQQSRLVILFSAILCSLRKDV----SLPDLEELLQSLLNLALSSEDEF----------------------- 205 (415)
T ss_pred CCccccccccccccHHHHHHHHHHcCCccc----CccCHHHHHHHHHHHHHcCCChH-----------------------
Confidence 00 01112222223333333222 222233466666665543 3333
Q ss_pred HHHHHHHHHHHHHhhcCC--hhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcC----ChhhHHHHhcCCcc
Q psy12605 255 MKILVDTVWALSYLTDGG--NDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTG----TDEQTQVILNCDAL 327 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~----~~~~~~~i~~~~~l 327 (845)
.+..++.+++-+...- .+..+ .++..+...+ .......+..++..+..++++ .+.... ..+
T Consensus 206 --~~~~~~~~la~LvNK~~~~~~l~-----~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~-----~~~ 273 (415)
T PF12460_consen 206 --SRLAALQLLASLVNKWPDDDDLD-----EFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT-----ELL 273 (415)
T ss_pred --HHHHHHHHHHHHHcCCCChhhHH-----HHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH-----HHH
Confidence 6667777777776542 11111 2233333333 334555666666666666532 111111 245
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhcCChH--------HHHHHHhc----CChHHHHHHhhhcccccCChhHHHHHHHH
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQA--------QVQAVIDA----GLLPKIIANLQKVGRIVLRPNLQFEAAWA 395 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--------~~~~l~~~----~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~ 395 (845)
..|+.++.+ +++...++..+.-+....++ .++.+... .++|.|++..+.. +...+.....+
T Consensus 274 ~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~-----~~~~k~~yL~A 346 (415)
T PF12460_consen 274 DKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEA-----DDEIKSNYLTA 346 (415)
T ss_pred HHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhc-----ChhhHHHHHHH
Confidence 667777776 56677777777777655222 22333333 3567777777664 44588888999
Q ss_pred HHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12605 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449 (845)
Q Consensus 396 L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 449 (845)
|.++..+-|...-.---...+|.+++.|+.++.+++..++.+|..+..+.++..
T Consensus 347 Ls~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i 400 (415)
T PF12460_consen 347 LSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELI 400 (415)
T ss_pred HHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHH
Confidence 999998877544333334578999999999999999999999999998876543
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG2259|consensus | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.004 Score=68.35 Aligned_cols=283 Identities=16% Similarity=0.126 Sum_probs=172.8
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHH---HHHhhcCC--CCCCC
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWV---IVNLCRNK--DPPPS 210 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~---L~~l~~~~--~~~~~ 210 (845)
|..+..+.+..++.+|+.+|-.++. .-..-+.+ -...++.+..+ ...+|..|+.+ ..|.+-.. .....
T Consensus 203 l~~~~~~~D~~Vrt~A~eglL~L~e-g~kL~~~~-----Y~~A~~~lsD~-~e~VR~aAvqlv~v~gn~~p~~~e~e~~e 275 (823)
T KOG2259|consen 203 LIYLEHDQDFRVRTHAVEGLLALSE-GFKLSKAC-----YSRAVKHLSDD-YEDVRKAAVQLVSVWGNRCPAPLERESEE 275 (823)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhcc-cccccHHH-----HHHHHHHhcch-HHHHHHHHHHHHHHHHhcCCCcccchhhh
Confidence 6666667777777777777777664 22233332 23455666665 55788887554 45555211 12223
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhh---hChh-hHHhhhhhHH-------HHHHHHHHH-HHh---------h
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIE---KNPQ-ISKILVSKMK-------ILVDTVWAL-SYL---------T 269 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~---~~~~-~~~~~~~~~~-------~~~~a~~~L-~~l---------~ 269 (845)
......++..++..+.+.+..+++.+++.+.. .+.+ +.+++..+.- .....-..+ +.- +
T Consensus 276 ~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~a 355 (823)
T KOG2259|consen 276 EKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNA 355 (823)
T ss_pred hhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccc
Confidence 34556788888899998888888888866532 2222 2232222200 000000011 111 0
Q ss_pred ----cCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHH
Q psy12605 270 ----DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345 (845)
Q Consensus 270 ----~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a 345 (845)
+..++.-.-++..|.+..++..|.++--+|+.+|...++.|+..++.... ..+..|++++++....+|..|
T Consensus 356 dvpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMfNDE~~~VRL~a 430 (823)
T KOG2259|consen 356 DVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAV-----RALDFLVDMFNDEIEVVRLKA 430 (823)
T ss_pred cCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHhccHHHHHHHHH
Confidence 01111223456778999999999998899999999999999988776544 356889999999999999999
Q ss_pred HHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 346 ~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
..+|..++.+ ..++++-++.+...|.+. +.+++.+.-..|.+.-..+.+..... +..|+..|.
T Consensus 431 i~aL~~Is~~------l~i~eeql~~il~~L~D~-----s~dvRe~l~elL~~~~~~d~~~i~m~-----v~~lL~~L~- 493 (823)
T KOG2259|consen 431 IFALTMISVH------LAIREEQLRQILESLEDR-----SVDVREALRELLKNARVSDLECIDMC-----VAHLLKNLG- 493 (823)
T ss_pred HHHHHHHHHH------heecHHHHHHHHHHHHhc-----CHHHHHHHHHHHHhcCCCcHHHHHHH-----HHHHHHHhh-
Confidence 9999998655 224566788888999884 78888887777766533332221111 122222221
Q ss_pred CCHHHHHHHHHHHHHhhcCChH
Q psy12605 426 PHSNVCEQAVWALGNIIGDGPQ 447 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~~~ 447 (845)
.-|.-+.....|++.+..+...
T Consensus 494 kyPqDrd~i~~cm~~iGqnH~~ 515 (823)
T KOG2259|consen 494 KYPQDRDEILRCMGRIGQNHRR 515 (823)
T ss_pred hCCCCcHHHHHHHHHHhccChh
Confidence 1222344556677777776544
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0032 Score=63.06 Aligned_cols=259 Identities=12% Similarity=0.137 Sum_probs=154.7
Q ss_pred HcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhhHHHHHH-cC
Q psy12605 54 ARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQTQEVVA-AG 131 (845)
Q Consensus 54 l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~g 131 (845)
.+.=++-.++.|+.++..+.-..+...+.+. +...-.+++++++.. ...++|+..+.+++.+.. +++.++.+-. ..
T Consensus 158 ~Q~i~~lTrlfav~cl~~l~~~~e~R~i~wa-entcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~d 235 (432)
T COG5231 158 SQLIDFLTRLFAVSCLSNLEFDVEKRKIEWA-ENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDD 235 (432)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHH-HhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence 3444555677777777665443222111222 555678888998544 457899999999999975 3566533322 35
Q ss_pred ChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChh--hHHHHHhcCChhhHHhhhcC-C-CCHHHHHHHHHHHHHhhcCCC
Q psy12605 132 AVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQ--LRDYVINMGVVPPLLSFIKP-D-IPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 132 ~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~--~r~~i~~~g~i~~Lv~ll~~-~-~~~~~~~~a~~~L~~l~~~~~ 206 (845)
.+.-|+++.++. .+++-.-++.++.|++..+|. ....+...+ +.+-++.|.. . .+++++.-.-.+=+.+-.+.
T Consensus 236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~-~~k~vq~L~erkysDEel~~di~~i~s~l~~~~- 313 (432)
T COG5231 236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLND-ISKCVQVLLERKYSDEELVIDIERIRSRLVQNT- 313 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcc-hHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhh-
Confidence 777788887764 567778899999999864432 222333322 3344444432 2 24444443333333333222
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc--Cc
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS--GV 284 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~ 284 (845)
+........+..|-.-+-+-+|. -...-.| ..+..++.+. .+
T Consensus 314 --k~l~~fD~Y~~ELdsg~l~wSp~-------------------------H~~~dFW---------s~N~d~l~kdny~i 357 (432)
T COG5231 314 --KKLCIFDNYLNELDSGRLEWSPY-------------------------HHKKDFW---------STNLDMLIKDNYEI 357 (432)
T ss_pred --hhhhHHHHHHHHHhhCcccCCCc-------------------------ccccCch---------hhhHHHHhhhhHHH
Confidence 11112222333332222111111 0111112 1223333333 46
Q ss_pred hhhHHhhccCCchh-hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 285 VPSLIPLLSHKEVK-VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 285 i~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
+..|.++++..++. ....|+.=|+.+....++....+...|+-..++++++++|++++-+|+.++.-+
T Consensus 358 ~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~ 426 (432)
T COG5231 358 VKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYGVKEIIMNLINHDDDDVKFEALQALQTC 426 (432)
T ss_pred HHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhhhHHHHHHHhcCCCchhhHHHHHHHHHH
Confidence 78889999777665 566788889999988899999999999999999999999999999999888765
|
|
| >KOG2259|consensus | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.031 Score=61.75 Aligned_cols=250 Identities=15% Similarity=0.139 Sum_probs=159.5
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH 294 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 294 (845)
..+..-+..+..+.|.. ++..|+..|..|.++..- ..-.....++++.+
T Consensus 197 ~~~~~~l~~~~~~~D~~-------------------------Vrt~A~eglL~L~eg~kL------~~~~Y~~A~~~lsD 245 (823)
T KOG2259|consen 197 EHAARGLIYLEHDQDFR-------------------------VRTHAVEGLLALSEGFKL------SKACYSRAVKHLSD 245 (823)
T ss_pred HHHHHHHHHHhcCCCcc-------------------------hHHHHHHHHHhhcccccc------cHHHHHHHHHHhcc
Confidence 34444466667777777 888888888877763221 22346788999999
Q ss_pred CchhhHHHHHHHH---HHHhcCCh---hhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCC
Q psy12605 295 KEVKVQTASLRAV---GNIVTGTD---EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGL 368 (845)
Q Consensus 295 ~~~~v~~~al~~L---~nl~~~~~---~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~ 368 (845)
.+..|+.+|++++ +|.+-... .....+.+ .++..+-..+.+.+-.+|..|+.+|+.+-..+...+.+..+..+
T Consensus 246 ~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D-~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKl 324 (823)
T KOG2259|consen 246 DYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLKD-AAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKL 324 (823)
T ss_pred hHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhHH-HHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHH
Confidence 9999999997655 45542111 11122222 36677888888888999999999999986666555555554444
Q ss_pred hHHHHHHhhhcccccCChhHHHHHHHHHHH--HhcC-----------ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHH
Q psy12605 369 LPKIIANLQKVGRIVLRPNLQFEAAWALTN--IASG-----------TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAV 435 (845)
Q Consensus 369 i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~--l~~~-----------~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~ 435 (845)
+..+-+.=..+ ........+ ..+| ..+....++.+|+.-.+++-++++-.+||.+|+
T Consensus 325 ms~lRRkr~ah----------krpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV 394 (823)
T KOG2259|consen 325 MSRLRRKRTAH----------KRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAV 394 (823)
T ss_pred hhhhhhhhhcc----------cchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHH
Confidence 33221111110 000111111 1111 123355688899999999999999999999999
Q ss_pred HHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhH
Q psy12605 436 WALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515 (845)
Q Consensus 436 ~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v 515 (845)
..++.++..+|..... .+.-|+++++++. ..++..++.++.-++.+- ..-.+.++.+...+.+...++
T Consensus 395 ~Sl~~La~ssP~FA~~-----aldfLvDMfNDE~-~~VRL~ai~aL~~Is~~l------~i~eeql~~il~~L~D~s~dv 462 (823)
T KOG2259|consen 395 ASLCSLATSSPGFAVR-----ALDFLVDMFNDEI-EVVRLKAIFALTMISVHL------AIREEQLRQILESLEDRSVDV 462 (823)
T ss_pred HHHHHHHcCCCCcHHH-----HHHHHHHHhccHH-HHHHHHHHHHHHHHHHHh------eecHHHHHHHHHHHHhcCHHH
Confidence 9999999988876543 3566777776544 366677888888777553 122445666666666666666
Q ss_pred HHH
Q psy12605 516 SIY 518 (845)
Q Consensus 516 ~~~ 518 (845)
+..
T Consensus 463 Re~ 465 (823)
T KOG2259|consen 463 REA 465 (823)
T ss_pred HHH
Confidence 654
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0014 Score=66.36 Aligned_cols=187 Identities=16% Similarity=0.116 Sum_probs=115.7
Q ss_pred cCCChHHHHHHHHHHHHHHcCC-CCccHHHHHh--cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcC
Q psy12605 55 RKDNPELQLLAVQSARKLLSSD-KNPPIEALIH--SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAG 131 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~-~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g 131 (845)
.+.|.+.+..|+..|+.++..+ .......+.. ..+++.++..+. +....+...|+.++..++..-.......+ ..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~-d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~-~~ 94 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLS-DLRSKVSKTACQLLSDLARQLGSHFEPYA-DI 94 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S--HH---HHHHHHHHHHHHHHHHGGGGHHHH-HH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHhHhHHHHH-HH
Confidence 6678999999999999998866 1222333322 266777788873 55667889999999999875444444443 35
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC-CCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP-PPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~ 210 (845)
.+|.|++.+.++..-+++.|..+|..++...+...+.+ ++.+.....+. +..+|..++..+..+....+. ...
T Consensus 95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~K-n~~vR~~~~~~l~~~l~~~~~~~~~ 168 (228)
T PF12348_consen 95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSK-NPQVREECAEWLAIILEKWGSDSSV 168 (228)
T ss_dssp HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S--HHHHHHHHHHHHHHHTT-----GG
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCC-CHHHHHHHHHHHHHHHHHccchHhh
Confidence 89999999999999999999999999997654112111 34444555555 458888888888888776641 111
Q ss_pred h---hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChh
Q psy12605 211 M---STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND 274 (845)
Q Consensus 211 ~---~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~ 274 (845)
+ .....+.+.+.+++.+.+++ ++..|-.++..+....++
T Consensus 169 l~~~~~~~~l~~~l~~~l~D~~~~-------------------------VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 169 LQKSAFLKQLVKALVKLLSDADPE-------------------------VREAARECLWALYSHFPE 210 (228)
T ss_dssp G--HHHHHHHHHHHHHHHTSS-HH-------------------------HHHHHHHHHHHHHHHH-H
T ss_pred hcccchHHHHHHHHHHHCCCCCHH-------------------------HHHHHHHHHHHHHHHCCH
Confidence 1 12356888889999999998 788777777766554443
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG4535|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.024 Score=60.10 Aligned_cols=110 Identities=15% Similarity=0.190 Sum_probs=76.4
Q ss_pred HHcCCChHHHHHHHHHHHHHHcCCCC-------------ccHHHHHhcC---CHHHHHHhhccCCChhHHHHHHHHHHHH
Q psy12605 53 AARKDNPELQLLAVQSARKLLSSDKN-------------PPIEALIHSG---ILPVLVECLERSDRPNLQFEAAWALTNI 116 (845)
Q Consensus 53 ~l~~~~~~~~~~a~~~l~~ll~~~~~-------------~~~~~i~~~g---~i~~Lv~lL~~~~~~~i~~~a~~~L~~l 116 (845)
.|+++++.++--|+..+..++...+. .+...++.+. .-..|+..|..+..+.+..++..+|.++
T Consensus 55 ~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~l 134 (728)
T KOG4535|consen 55 TLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSDHAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANL 134 (728)
T ss_pred ecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHH
Confidence 56788888888888877776653210 1122233332 3445666776667778889999999999
Q ss_pred hcCChhhHHHHH-HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 117 ASGTSAQTQEVV-AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 117 a~~~~~~~~~i~-~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.+..+-++..+- -...+..+-+++++.|+.++..++-.++.|.+.+
T Consensus 135 v~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v~t~ 181 (728)
T KOG4535|consen 135 VSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIVSTH 181 (728)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHHhcC
Confidence 987776654422 1346677777888999999999999999887654
|
|
| >KOG2734|consensus | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.025 Score=59.54 Aligned_cols=233 Identities=11% Similarity=0.146 Sum_probs=159.0
Q ss_pred cHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC---------hhhHHHHHHcCChHHHHHhhCCCChhH---
Q psy12605 80 PIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT---------SAQTQEVVAAGAVPLFLRLLMSPHSNV--- 147 (845)
Q Consensus 80 ~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~---------~~~~~~i~~~g~i~~L~~lL~s~~~~v--- 147 (845)
....+++.+.++.|+++| .++|.++-...+..|..+...+ .....++++.++++.|++.++.=++.+
T Consensus 117 LYp~lveln~V~slL~LL-gHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvkee 195 (536)
T KOG2734|consen 117 LYPILVELNAVQSLLELL-GHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVKEE 195 (536)
T ss_pred HHHHHHHhccHHHHHHHh-cCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcchhh
Confidence 456788999999999999 4678899999999999887422 134567888999999999887554444
Q ss_pred ---HHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhh-cCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHh
Q psy12605 148 ---CEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNI 223 (845)
Q Consensus 148 ---~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 223 (845)
...++..+-|+..-.+++...+++.|.+..|+.-+ ....-..-...|..+|+-+..+.+........-.++..+.+
T Consensus 196 a~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~ 275 (536)
T KOG2734|consen 196 ADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVLLR 275 (536)
T ss_pred hhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHHHh
Confidence 44577788899888888888889888888877633 33223356677888888888877543332222233333333
Q ss_pred hc---ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhH
Q psy12605 224 LI---HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQ 300 (845)
Q Consensus 224 ll---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~ 300 (845)
-+ +..||.. + +..++.++...+|+.+..... +++.+....+++...-+++. ....+
T Consensus 276 ~la~yk~~dP~~------------~-------~E~EmmeNLFdcLCs~lm~~~-nr~~Fl~~EGlqLm~Lmlr~-Kk~sr 334 (536)
T KOG2734|consen 276 QLAVYKRHDPAT------------V-------DEEEMMENLFDCLCSLLMAPA-NRERFLKGEGLQLMNLMLRE-KKVSR 334 (536)
T ss_pred hcchhhccCCCC------------c-------CHHHHHHHHHHHHHHHhcChh-hhhhhhccccHHHHHHHHHH-HHHhh
Confidence 22 2334320 0 011266666777776655444 45666677788777666666 55578
Q ss_pred HHHHHHHHHHhcCCh--hhHHHHhcCCccchhhHhh
Q psy12605 301 TASLRAVGNIVTGTD--EQTQVILNCDALSHFPALL 334 (845)
Q Consensus 301 ~~al~~L~nl~~~~~--~~~~~i~~~~~l~~L~~lL 334 (845)
..|+++|-....+.+ +....+++..++..+..+.
T Consensus 335 ~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F 370 (536)
T KOG2734|consen 335 GSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF 370 (536)
T ss_pred hhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence 889999999988876 5667777877777766655
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0053 Score=71.96 Aligned_cols=299 Identities=14% Similarity=0.110 Sum_probs=180.6
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC---Chhh
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD---GPQL 165 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~---~~~~ 165 (845)
+++.+...++.-...+.+..|+..|..++....+-. .=.-++|.++.++.++..++|..|+.+|..+-.. -+..
T Consensus 423 ~vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~---~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~ 499 (1431)
T KOG1240|consen 423 FVSVLTSCIRALKTIQTKLAALELLQELSTYIDDEV---KLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS 499 (1431)
T ss_pred eHHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHH---HHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence 466666666544667889999999999986322211 1124899999999999999999999988876532 1212
Q ss_pred HHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhCh
Q psy12605 166 RDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNP 245 (845)
Q Consensus 166 r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~ 245 (845)
-..++..-.+|.|-.++...+...+|..-+.+|..|+...- .+ .....-.....+++..+.+
T Consensus 500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~---rF-le~~q~~~~~g~~n~~nse-------------- 561 (1431)
T KOG1240|consen 500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY---RF-LELTQELRQAGMLNDPNSE-------------- 561 (1431)
T ss_pred cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH---HH-HHHHHHHHhcccccCcccc--------------
Confidence 22233334567777777765555666666777777664220 00 0000000011112222211
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcC
Q psy12605 246 QISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
..... .......+ ..++-+..+.+|.++++-|+.+-+..|+-||.-=.. .=-+.
T Consensus 562 ---------------------t~~~~~~~~~~~~L-~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk---~ksND 616 (1431)
T KOG1240|consen 562 ---------------------TAPEQNYNTELQAL-HHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK---EKSND 616 (1431)
T ss_pred ---------------------cccccccchHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh---ccccc
Confidence 00000 01111222 223344566777777788888888888888742110 00011
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
=.++.|+..|+++|..+|..-...+..++.... ..-++..++|.|.+-|.+. .+.|...|+.++..++...-
T Consensus 617 ~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG---~rs~seyllPLl~Q~ltD~-----EE~Viv~aL~~ls~Lik~~l 688 (1431)
T KOG1240|consen 617 VILSHLITFLNDKDWRLRGAFFDSIVGVSIFVG---WRSVSEYLLPLLQQGLTDG-----EEAVIVSALGSLSILIKLGL 688 (1431)
T ss_pred chHHHHHHHhcCccHHHHHHHHhhccceEEEEe---eeeHHHHHHHHHHHhccCc-----chhhHHHHHHHHHHHHHhcc
Confidence 257889999999999888777666665533211 1113456788888888874 78888999999998886432
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
.++..-...++....+|-.++.-||..++..|..++.
T Consensus 689 --l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~ 725 (1431)
T KOG1240|consen 689 --LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIAR 725 (1431)
T ss_pred --cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence 2222222345566777888999999999999988775
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0063 Score=70.18 Aligned_cols=234 Identities=17% Similarity=0.200 Sum_probs=172.6
Q ss_pred HHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC
Q psy12605 62 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141 (845)
Q Consensus 62 ~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~ 141 (845)
++.|+.-|.+++..++ ..+..-..-|+.|..++||+ +..+++|..-+.+-++|-.-++.....++..++=.++++.|.
T Consensus 487 RlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQ-S~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~ 564 (1387)
T KOG1517|consen 487 RLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQ-SSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD 564 (1387)
T ss_pred HHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhc-cchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence 4667777878887663 34555567799999999994 677888888888888877766667777888888888888887
Q ss_pred CC---ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHH
Q psy12605 142 SP---HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL 218 (845)
Q Consensus 142 s~---~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l 218 (845)
.+ +++-+.-|+.+|..+...-+..++...+.+.+...+..++.+...-++.-++-+|..|-.+.+..+-.....++.
T Consensus 565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah 644 (1387)
T KOG1517|consen 565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH 644 (1387)
T ss_pred CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence 72 457788899999999988777888888889999888888875333466668888999988887666666677888
Q ss_pred HHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC----hhhHHH------------HHhc
Q psy12605 219 PALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG----NDQIQM------------VIDS 282 (845)
Q Consensus 219 ~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~------------~~~~ 282 (845)
..|..++.++-++ ++..|..+|..+.... ++.... .++.
T Consensus 645 ekL~~~LsD~vpE-------------------------VRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~ 699 (1387)
T KOG1517|consen 645 EKLILLLSDPVPE-------------------------VRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIED 699 (1387)
T ss_pred HHHHHHhcCccHH-------------------------HHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHH
Confidence 8899999888888 8888888888765532 111111 1122
Q ss_pred Cch---hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHh
Q psy12605 283 GVV---PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVIL 322 (845)
Q Consensus 283 g~i---~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~ 322 (845)
-+. -.++.+++...+-++....-+|..+..+.......+.
T Consensus 700 ~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~~~~~~va 742 (1387)
T KOG1517|consen 700 LIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVGYVSHLKVVA 742 (1387)
T ss_pred HHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHhhHHHhHHHh
Confidence 222 2566666778888888888888888777655444333
|
|
| >KOG2973|consensus | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.05 Score=54.83 Aligned_cols=287 Identities=16% Similarity=0.158 Sum_probs=157.9
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHH--hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI--HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..+++ ..+.+.+|.++..|+..+-.+-.. ..+.+. +.-.++.+.++++. ..+ -..|+.+|.|++.. .+.
T Consensus 5 l~elv-~ll~~~sP~v~~~AV~~l~~lt~~----~~~~~~~~~~~~lk~l~qL~~~-~~~--~~~a~~alVnlsq~-~~l 75 (353)
T KOG2973|consen 5 LVELV-ELLHSLSPPVRKAAVEHLLGLTGR----GLQSLSKYSEALLKDLTQLLKD-LDP--AEPAATALVNLSQK-EEL 75 (353)
T ss_pred HHHHH-HHhccCChHHHHHHHHHHhhcccc----chhhhccchhhhHHHHHHHccC-ccc--ccHHHHHHHHHHhh-HHH
Confidence 34677 889999999999998888765432 122222 23468889999953 333 57888999999875 667
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh------cCChhhHHhhhcCCCC-HHHHHHHHH
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN------MGVVPPLLSFIKPDIP-ISFLRNVTW 196 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~------~g~i~~Lv~ll~~~~~-~~~~~~a~~ 196 (845)
++.+.+. .+..++..+-.+...+....+..|.|++.+.......+.. .|.+.....+..++.. ..-....+.
T Consensus 76 ~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~ 154 (353)
T KOG2973|consen 76 RKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAP 154 (353)
T ss_pred HHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHH
Confidence 7777776 7888888888888889999999999999887655554432 3344444444444322 122344566
Q ss_pred HHHHhhcCCCCCCChhHHhhHH--HHHHhhcccCCchhhHHHH----HHHhhhChhhHHhhh-hhHHHHHHHHHHHHHhh
Q psy12605 197 VIVNLCRNKDPPPSMSTIIELL--PALNILIHHHDTSVSIYLW----LSIIEKNPQISKILV-SKMKILVDTVWALSYLT 269 (845)
Q Consensus 197 ~L~~l~~~~~~~~~~~~~~~~l--~~L~~ll~~~~~~~~~~~~----~~l~~~~~~~~~~~~-~~~~~~~~a~~~L~~l~ 269 (845)
+++|+++......-+ .....+ ..+..+-. ++..++..+- ++.+...+ ....+. ....+ -...|.=++
T Consensus 155 vf~nls~~~~gR~l~-~~~k~~p~~kll~ft~-~~s~vRr~GvagtlkN~cFd~~-~h~~lL~e~~~l---Lp~iLlPla 228 (353)
T KOG2973|consen 155 VFANLSQFEAGRKLL-LEPKRFPDQKLLPFTS-EDSQVRRGGVAGTLKNCCFDAK-LHEVLLDESINL---LPAILLPLA 228 (353)
T ss_pred HHHHHhhhhhhhhHh-cchhhhhHhhhhcccc-cchhhhccchHHHHHhhhccch-hHHHHhcchHHH---HHHHHhhcC
Confidence 777777765322211 111111 11222222 3333211111 11111000 000000 00000 111111112
Q ss_pred cCChhhHHHHHhcCchhhHHhhcc-----CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHH
Q psy12605 270 DGGNDQIQMVIDSGVVPSLIPLLS-----HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICK 343 (845)
Q Consensus 270 ~~~~~~~~~~~~~g~i~~Lv~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~ 343 (845)
... +.-+. +...+|.=+++|. .+++.++..-+.+|.-+|.. ...|+.+.+.|+.+.+-.+=+. +++++++
T Consensus 229 gpe-e~sEE--dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT-~~GRe~lR~kgvYpilRElhk~e~ded~~~ 304 (353)
T KOG2973|consen 229 GPE-ELSEE--DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT-RAGREVLRSKGVYPILRELHKWEEDEDIRE 304 (353)
T ss_pred Ccc-ccCHH--HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh-hHhHHHHHhcCchHHHHHHhcCCCcHHHHH
Confidence 111 10000 1112233236662 45788999999999999876 4557888888777766555544 4666666
Q ss_pred HHHHHHHHh
Q psy12605 344 EAVWFLSNI 352 (845)
Q Consensus 344 ~a~~~L~nl 352 (845)
.+-....-+
T Consensus 305 ace~vvq~L 313 (353)
T KOG2973|consen 305 ACEQVVQML 313 (353)
T ss_pred HHHHHHHHH
Confidence 554444444
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00093 Score=56.45 Aligned_cols=68 Identities=16% Similarity=0.320 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC--CCChhHHHHHHHHHHHhcCCChhhHHHHHhc
Q psy12605 105 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM--SPHSNVCEQAVWALGNIIGDGPQLRDYVINM 172 (845)
Q Consensus 105 i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~--s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~ 172 (845)
.+.....++++++..+++....+.+.|++|.++.... ..+|-++++|++++.|++..++++++.+.+.
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L 71 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL 71 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence 4667789999999999999999999999999999864 5689999999999999999999999988754
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.00042 Score=48.41 Aligned_cols=39 Identities=41% Similarity=0.674 Sum_probs=36.2
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
++++..+++.|+++.|+++|++++++++..++|+|+||+
T Consensus 2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 357788999999999999999999999999999999997
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >KOG1991|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.51 Score=55.16 Aligned_cols=264 Identities=14% Similarity=0.140 Sum_probs=138.3
Q ss_pred HHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhc------C--CchhhHHHHHHHHHHhhcC--ChHHHHHHHhcCChH
Q psy12605 302 ASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLT------H--PKEKICKEAVWFLSNITAG--NQAQVQAVIDAGLLP 370 (845)
Q Consensus 302 ~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~------~--~~~~~~~~a~~~L~nl~~~--~~~~~~~l~~~~~i~ 370 (845)
+|+.++..+++.. .+.- .+.++.+++++. . .++..+..|+.++++++.- .....+..++.=+++
T Consensus 391 Aa~~~l~~~~~KR~ke~l-----~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 391 AALDFLTTLVSKRGKETL-----PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred HHHHHHHHHHHhcchhhh-----hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 6777777777543 2211 256777788875 2 2455667888888887531 111112222222344
Q ss_pred HHHHHhhhcccccCChhHHHHHHHHHHHHhc---CChHhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCCh
Q psy12605 371 KIIANLQKVGRIVLRPNLQFEAAWALTNIAS---GTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 371 ~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
.++..+++. -.-+|..|||.++.++. .++.... .+.....+.|. +.+-.|+..|+.||..+..+.+
T Consensus 466 hVfP~f~s~-----~g~Lrarac~vl~~~~~~df~d~~~l~-----~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~ 535 (1010)
T KOG1991|consen 466 HVFPEFQSP-----YGYLRARACWVLSQFSSIDFKDPNNLS-----EALELTHNCLLNDNELPVRVEAALALQSFISNQE 535 (1010)
T ss_pred HhhHhhcCc-----hhHHHHHHHHHHHHHHhccCCChHHHH-----HHHHHHHHHhccCCcCchhhHHHHHHHHHHhcch
Confidence 444444442 56789999999999984 2222222 24455566666 7777899999999999998776
Q ss_pred HHHHHHHh--CCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhh
Q psy12605 447 QLRDYVIN--MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSII 524 (845)
Q Consensus 447 ~~~~~l~~--~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l 524 (845)
.....+.. .+.++.|+++.+...++.+.-..=..++.++.--. +-..+........+.+++..++.
T Consensus 536 ~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseEls-PfA~eL~q~La~~F~k~l~~~~~----------- 603 (1010)
T KOG1991|consen 536 QADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELS-PFAVELCQNLAETFLKVLQTSED----------- 603 (1010)
T ss_pred hhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhc-hhHHHHHHHHHHHHHHHHhccCC-----------
Confidence 55443332 24566677776655443322222122222221110 11112223334444444442100
Q ss_pred hcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHH
Q psy12605 525 EKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAV 604 (845)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 604 (845)
+.+......+...|++.++-.++.+-+... +. -.-++...++++..++++.-.++-++++
T Consensus 604 -~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p------------------~v-l~~le~~~l~vi~~iL~~~i~dfyeE~~ 663 (1010)
T KOG1991|consen 604 -EDESDDDKAIAASGILRTISTILLSLENHP------------------EV-LKQLEPIVLPVIGFILKNDITDFYEELL 663 (1010)
T ss_pred -CCccchHHHHHHHHHHHHHHHHHHHHhccH------------------HH-HHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 111122223344455555554443322111 11 1112334566666777777778888888
Q ss_pred HHHhhhcc
Q psy12605 605 WFLSNITA 612 (845)
Q Consensus 605 ~~Lsnl~~ 612 (845)
..+.+++.
T Consensus 664 ei~~~~t~ 671 (1010)
T KOG1991|consen 664 EIVSSLTF 671 (1010)
T ss_pred HHHhhhhh
Confidence 88877764
|
|
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.49 Score=54.88 Aligned_cols=169 Identities=14% Similarity=0.154 Sum_probs=115.8
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHH
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDT 261 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 261 (845)
+.+.++..-....=.+++++..+++ .....|.+++...+.|.+ ++.-.
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d-------mssLf~dViK~~~trd~E-------------------------lKrL~ 75 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED-------MSSLFPDVIKNVATRDVE-------------------------LKRLL 75 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC-------hHHHHHHHHHHHHhcCHH-------------------------HHHHH
Confidence 4444343344445567788887774 456667777766666666 44444
Q ss_pred HHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhh
Q psy12605 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKI 341 (845)
Q Consensus 262 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~ 341 (845)
-.-+...+...++.. + -.+..+..=+.++++.+|..|+++++.+=. + .+.+ .+++++.++++++++.+
T Consensus 76 ylYl~~yak~~P~~~--l---LavNti~kDl~d~N~~iR~~AlR~ls~l~~--~----el~~-~~~~~ik~~l~d~~ayV 143 (757)
T COG5096 76 YLYLERYAKLKPELA--L---LAVNTIQKDLQDPNEEIRGFALRTLSLLRV--K----ELLG-NIIDPIKKLLTDPHAYV 143 (757)
T ss_pred HHHHHHHhccCHHHH--H---HHHHHHHhhccCCCHHHHHHHHHHHHhcCh--H----HHHH-HHHHHHHHHccCCcHHH
Confidence 444444555555322 1 135667777899999999999999998721 2 2222 36789999999999999
Q ss_pred HHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 342 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 342 ~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
|+.|+.++.++-.-++.. ..+.|.+..+..++.+ .+|.+..+|..+|..+...
T Consensus 144 Rk~Aalav~kly~ld~~l---~~~~g~~~~l~~l~~D-----~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 144 RKTAALAVAKLYRLDKDL---YHELGLIDILKELVAD-----SDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHHHHHHHhcCHhh---hhcccHHHHHHHHhhC-----CCchHHHHHHHHHHHhchh
Confidence 999999999996544432 3355677777777766 4899999999999988643
|
|
| >PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00044 Score=58.07 Aligned_cols=87 Identities=28% Similarity=0.374 Sum_probs=70.4
Q ss_pred hhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 285 VPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 285 i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
++.|++.| .++++.++..|+.+|+.+- +. .+++.|..+++++++.+|..|+++|+.+.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~---~~--------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~---------- 59 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG---DP--------EAIPALIELLKDEDPMVRRAAARALGRIG---------- 59 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT---HH--------HHHHHHHHHHTSSSHHHHHHHHHHHHCCH----------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC---CH--------hHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------
Confidence 46788888 8899999999999999552 11 35789999999999999999999999882
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHH
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALT 397 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~ 397 (845)
....++.|.+.+.+. .+..++..|..+|+
T Consensus 60 -~~~~~~~L~~~l~~~----~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 60 -DPEAIPALIKLLQDD----DDEVVREAAAEALG 88 (88)
T ss_dssp -HHHTHHHHHHHHTC-----SSHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHcCC----CcHHHHHHHHhhcC
Confidence 234788999999876 46677898988874
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.0004 Score=52.31 Aligned_cols=55 Identities=35% Similarity=0.593 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHh
Q psy12605 103 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158 (845)
Q Consensus 103 ~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nl 158 (845)
|.+|..|+++|++++...++..... ...++|.|+.+|+++++++|..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~-~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPY-LPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHH-HHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHH-HHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 5789999999999987766665553 346999999999999999999999999986
|
... |
| >COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.66 Score=53.85 Aligned_cols=169 Identities=15% Similarity=0.170 Sum_probs=126.7
Q ss_pred HcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCCh
Q psy12605 54 ARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 133 (845)
Q Consensus 54 l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i 133 (845)
+.+.+...+..|++.+......+++ ... +.|.+++... +.+.++++..-.-|..+++..++.... ++
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d--mss-----Lf~dViK~~~-trd~ElKrL~ylYl~~yak~~P~~~lL-----av 94 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED--MSS-----LFPDVIKNVA-TRDVELKRLLYLYLERYAKLKPELALL-----AV 94 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC--hHH-----HHHHHHHHHH-hcCHHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence 5666777788888887777776654 333 4777888885 788899999988999999877743332 67
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhH
Q psy12605 134 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMST 213 (845)
Q Consensus 134 ~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 213 (845)
+.+.+=++++++.+|-.|+++|+.+- .++.-.. +++++.+++.++ +..+|+.|+-++.++.+-+ ..+..
T Consensus 95 Nti~kDl~d~N~~iR~~AlR~ls~l~--~~el~~~-----~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld---~~l~~ 163 (757)
T COG5096 95 NTIQKDLQDPNEEIRGFALRTLSLLR--VKELLGN-----IIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD---KDLYH 163 (757)
T ss_pred HHHHhhccCCCHHHHHHHHHHHHhcC--hHHHHHH-----HHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC---Hhhhh
Confidence 88899999999999999999999884 2223222 478888888887 4489999999999998654 33344
Q ss_pred HhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 214 IIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
..|.+..+..++.+.||.+-.+|..+++...|+
T Consensus 164 ~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 164 ELGLIDILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred cccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 566778888888899999766666666666655
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.0081 Score=70.49 Aligned_cols=265 Identities=16% Similarity=0.135 Sum_probs=160.6
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCC-ccHHH-HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKN-PPIEA-LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~-~~~~~-i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
.++-+|-++ .++.+.++.+|-.|+..|.+++..-++ ++.++ +.-.=++|.|-.++..+....+|..-|..|..||..
T Consensus 460 LDRVlPY~v-~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~t 538 (1431)
T KOG1240|consen 460 LDRVLPYFV-HLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKT 538 (1431)
T ss_pred HhhhHHHHH-HHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHH
Confidence 456677888 899999999999999999999885332 11222 223446888888885435667888888889888852
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
...+.+.+--.....++++++.+ ...+. ....-...+.+ ++=+.+..++..+ +.-+++..+..|.
T Consensus 539 ----A~rFle~~q~~~~~g~~n~~nse-------t~~~~--~~~~~~~~L~~-~V~~~v~sLlsd~-~~~Vkr~Lle~i~ 603 (1431)
T KOG1240|consen 539 ----AYRFLELTQELRQAGMLNDPNSE-------TAPEQ--NYNTELQALHH-TVEQMVSSLLSDS-PPIVKRALLESII 603 (1431)
T ss_pred ----HHHHHHHHHHHHhcccccCcccc-------ccccc--ccchHHHHHHH-HHHHHHHHHHcCC-chHHHHHHHHHHH
Confidence 22222211111122234444432 11111 11112222222 1112333455444 3356666666676
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
-||..-.-.. ...-+++.|...|++.|.. ++..-...+..++-.-. ..-
T Consensus 604 ~LC~FFGk~k---sND~iLshLiTfLNDkDw~-------------------------LR~aFfdsI~gvsi~VG---~rs 652 (1431)
T KOG1240|consen 604 PLCVFFGKEK---SNDVILSHLITFLNDKDWR-------------------------LRGAFFDSIVGVSIFVG---WRS 652 (1431)
T ss_pred HHHHHhhhcc---cccchHHHHHHHhcCccHH-------------------------HHHHHHhhccceEEEEe---eee
Confidence 6665321111 1235778888888888777 55555555554433211 111
Q ss_pred HhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC
Q psy12605 280 IDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG 355 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~ 355 (845)
++..++|.|.+.|.++++-|...|+++|..|+...--.+..+. .+++....+|-+++.-+|..++..+..+...
T Consensus 653 ~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ 726 (1431)
T KOG1240|consen 653 VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIARQ 726 (1431)
T ss_pred HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHhh
Confidence 3667789999999999999999999999999865322222232 3566677788899999999999999887543
|
|
| >PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.00058 Score=51.41 Aligned_cols=55 Identities=35% Similarity=0.593 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 386 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
|.+|..|+|+|++++...++.... .....++.|+.+|.++++.||..|+++|++|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 478999999999988877776655 4557899999999999999999999999976
|
... |
| >KOG1078|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.48 Score=53.91 Aligned_cols=176 Identities=19% Similarity=0.246 Sum_probs=95.7
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
..+.+=.++.+..+.+...|.+++.++...+... +. ..+..|--+++++...+|-.|..+|..++...+.... .
T Consensus 246 ~~~fl~s~l~~K~emV~~EaArai~~l~~~~~r~---l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~-~ 319 (865)
T KOG1078|consen 246 LFPFLESCLRHKSEMVIYEAARAIVSLPNTNSRE---LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT-V 319 (865)
T ss_pred HHHHHHHHHhchhHHHHHHHHHHHhhccccCHhh---cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc-c
Confidence 3455556667788889999999999886543322 11 2667777788999999999999999998765443211 0
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh-cCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
.+. =++.|+. + .-+.-|..++..+. .+.......+.. -+..++.=++++..-+...|+.+|++.-
T Consensus 320 cN~-elE~lIt---d--------~NrsIat~AITtLLKTG~e~sv~rLm~--qI~~fv~disDeFKivvvdai~sLc~~f 385 (865)
T KOG1078|consen 320 CNL-DLESLIT---D--------SNRSIATLAITTLLKTGTESSVDRLMK--QISSFVSDISDEFKIVVVDAIRSLCLKF 385 (865)
T ss_pred cch-hHHhhhc---c--------cccchhHHHHHHHHHhcchhHHHHHHH--HHHHHHHhccccceEEeHHHHHHHHhhc
Confidence 000 1122221 1 11222333333332 233333333321 2344444444444445555555555432
Q ss_pred cCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 443 GDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 443 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
| ....+.+.-|-.+|.++...+.++.++.++..+...
T Consensus 386 ---p-----~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~ 422 (865)
T KOG1078|consen 386 ---P-----RKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEE 422 (865)
T ss_pred ---c-----HHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHh
Confidence 2 122334555666666655556667766666666553
|
|
| >KOG0567|consensus | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.022 Score=56.08 Aligned_cols=92 Identities=21% Similarity=0.199 Sum_probs=72.5
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
+..|.+-+...+.-.|-+++.+++.+- ....+|.|.+.|.+.. ..+-+|.+|+.+|+.++...
T Consensus 189 I~al~~~l~~~SalfrhEvAfVfGQl~-----------s~~ai~~L~k~L~d~~---E~pMVRhEaAeALGaIa~e~--- 251 (289)
T KOG0567|consen 189 INALIDGLADDSALFRHEVAFVFGQLQ-----------SPAAIPSLIKVLLDET---EHPMVRHEAAEALGAIADED--- 251 (289)
T ss_pred HHHHHHhcccchHHHHHHHHHHHhhcc-----------chhhhHHHHHHHHhhh---cchHHHHHHHHHHHhhcCHH---
Confidence 445666666667788889999999872 2346788888888764 57899999999999997643
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+++.|.+++.++.+-|++.|..+|--+..
T Consensus 252 --------~~~vL~e~~~D~~~vv~esc~valdm~ey 280 (289)
T KOG0567|consen 252 --------CVEVLKEYLGDEERVVRESCEVALDMLEY 280 (289)
T ss_pred --------HHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence 68889999999999999999988865543
|
|
| >KOG2734|consensus | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.15 Score=53.85 Aligned_cols=240 Identities=14% Similarity=0.090 Sum_probs=161.4
Q ss_pred HHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-----h----hhHHHHHhcCChhhHHh
Q psy12605 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-----P----QLRDYVINMGVVPPLLS 180 (845)
Q Consensus 110 ~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-----~----~~r~~i~~~g~i~~Lv~ 180 (845)
..-+.-+|.. |+.-..+++.++|+.|+.+|...+.++....+..|..+...+ . ..-+.+++.++++.|++
T Consensus 105 IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvq 183 (536)
T KOG2734|consen 105 IQEMHVLATM-PDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQ 183 (536)
T ss_pred HHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHH
Confidence 3445556644 778888999999999999999999999999999999997543 1 24556677788888887
Q ss_pred hhcCC-----CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc--CCchhhHHHHHHHhhhChhhHHhhhh
Q psy12605 181 FIKPD-----IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH--HDTSVSIYLWLSIIEKNPQISKILVS 253 (845)
Q Consensus 181 ll~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (845)
-+..= ....-..++...+-|+..-.+.-.......|.+.-|..-+.. ....
T Consensus 184 nveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~a---------------------- 241 (536)
T KOG2734|consen 184 NVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDA---------------------- 241 (536)
T ss_pred HHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcch----------------------
Confidence 76421 112334456666777766554333333444555555443322 1222
Q ss_pred hHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc-----cCC----chhhHHHHHHHHHHHhcCChhhHHHHhcC
Q psy12605 254 KMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL-----SHK----EVKVQTASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 254 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL-----~~~----~~~v~~~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
...+|...|+-+-..+.+.......-+++..+++-+ ++| ..+..+.-..+|+.+... +..+..+...
T Consensus 242 ---Nk~YasEiLaillq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~-~~nr~~Fl~~ 317 (536)
T KOG2734|consen 242 ---NKQYASEILAILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMA-PANRERFLKG 317 (536)
T ss_pred ---hHHHHHHHHHHHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcC-hhhhhhhhcc
Confidence 566777777777777766666666667787777776 121 234666777788877665 5567778888
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCCh--HHHHHHHhcCChHHHHHHhh
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQ--AQVQAVIDAGLLPKIIANLQ 377 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~--~~~~~l~~~~~i~~Lv~lL~ 377 (845)
.++....-++.. ....|..+..+|-.+..+.+ +.+..+++..++..++.+..
T Consensus 318 EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~FM 371 (536)
T KOG2734|consen 318 EGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLFM 371 (536)
T ss_pred ccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHHh
Confidence 788766666655 45667788888988877765 67777888777777766665
|
|
| >KOG1077|consensus | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.94 Score=50.95 Aligned_cols=95 Identities=15% Similarity=0.152 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 189 SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 189 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
...--|..+++|+.... ..+..-+-+-+++.+.+... -+++.++.||-.|
T Consensus 126 ~fv~LAL~~I~niG~re-------~~ea~~~DI~KlLvS~~~~~-----------------------~vkqkaALclL~L 175 (938)
T KOG1077|consen 126 TFVCLALHCIANIGSRE-------MAEAFADDIPKLLVSGSSMD-----------------------YVKQKAALCLLRL 175 (938)
T ss_pred HHHHHHHHHHHhhccHh-------HHHHhhhhhHHHHhCCcchH-----------------------HHHHHHHHHHHHH
Confidence 34555777888775432 12223333446666554431 1778888888888
Q ss_pred hcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh
Q psy12605 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 269 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
-+..++.+. -.+..++++.+|.+.+..+..++...+-.++..+++
T Consensus 176 ~r~spDl~~---~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~ 220 (938)
T KOG1077|consen 176 FRKSPDLVN---PGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPE 220 (938)
T ss_pred HhcCccccC---hhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCH
Confidence 777666432 236788999999998888999999999988877655
|
|
| >COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.053 Score=58.84 Aligned_cols=289 Identities=12% Similarity=0.085 Sum_probs=137.4
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
..|.|-.-|++..+.+.-.+++++..++... .....++. .+..|-.+|... ....|-.|+.+|..++...+..
T Consensus 265 ~rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--v~~~~~~~-~vs~L~~fL~s~-rv~~rFsA~Riln~lam~~P~k--- 337 (898)
T COG5240 265 LRPFLNSWLSDKFEMVFLEAARAVCALSEEN--VGSQFVDQ-TVSSLRTFLKST-RVVLRFSAMRILNQLAMKYPQK--- 337 (898)
T ss_pred HHHHHHHHhcCcchhhhHHHHHHHHHHHHhc--cCHHHHHH-HHHHHHHHHhcc-hHHHHHHHHHHHHHHHhhCCce---
Confidence 3455555566666788888888888877543 11122221 356666777766 4578889999999999866321
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhh
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 291 (845)
..-+=+.+-.++.+.+.. +..+|..+|.. .+..+.+..+ +..+..+
T Consensus 338 --v~vcN~evEsLIsd~Nr~-------------------------IstyAITtLLK--TGt~e~idrL-----v~~I~sf 383 (898)
T COG5240 338 --VSVCNKEVESLISDENRT-------------------------ISTYAITTLLK--TGTEETIDRL-----VNLIPSF 383 (898)
T ss_pred --eeecChhHHHHhhccccc-------------------------chHHHHHHHHH--cCchhhHHHH-----HHHHHHH
Confidence 112223344455555555 44455544432 2233333222 2333334
Q ss_pred ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc-CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChH
Q psy12605 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLP 370 (845)
Q Consensus 292 L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~ 370 (845)
+++-+...+.-++.++..++..-+..... .+..|...|. .+.-+.++.+..+++.+....|+.++. ++.
T Consensus 384 vhD~SD~FKiI~ida~rsLsl~Fp~k~~s-----~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe 453 (898)
T COG5240 384 VHDMSDGFKIIAIDALRSLSLLFPSKKLS-----YLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALE 453 (898)
T ss_pred HHhhccCceEEeHHHHHHHHhhCcHHHHH-----HHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHH
Confidence 44433334444444444444322222221 2233444332 234455666666666655554444322 334
Q ss_pred HHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHH
Q psy12605 371 KIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450 (845)
Q Consensus 371 ~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~ 450 (845)
.|+.++.+. .-+.+.......|+.=.-..++-. ..+..+.+-+--++.-||..|+.||..++..-.+
T Consensus 454 ~LC~fIEDc----ey~~I~vrIL~iLG~EgP~a~~P~------~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d--- 520 (898)
T COG5240 454 VLCTFIEDC----EYHQITVRILGILGREGPRAKTPG------KYVRHIYNRLILENNIVRSAAVQALSKFALNISD--- 520 (898)
T ss_pred HHHHHHhhc----chhHHHHHHHHHhcccCCCCCCcc------hHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc---
Confidence 455555443 122222222222222110001100 1122333333345666777777777776653211
Q ss_pred HHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 451 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 451 ~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
.+....+...|-+++.+ .+.+++..++..+.+|-
T Consensus 521 ~~~~~sv~~~lkRclnD-~DdeVRdrAsf~l~~~~ 554 (898)
T COG5240 521 VVSPQSVENALKRCLND-QDDEVRDRASFLLRNMR 554 (898)
T ss_pred cccHHHHHHHHHHHhhc-ccHHHHHHHHHHHHhhh
Confidence 11111122333344443 34467777777777664
|
|
| >KOG1991|consensus | Back alignment and domain information |
|---|
Probab=96.94 E-value=1.3 Score=51.93 Aligned_cols=414 Identities=16% Similarity=0.129 Sum_probs=204.5
Q ss_pred ChHHHHHHHHHHHHHHcCC-CCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHH
Q psy12605 58 NPELQLLAVQSARKLLSSD-KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 136 (845)
Q Consensus 58 ~~~~~~~a~~~l~~ll~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L 136 (845)
++-....|++.+..+.+.- ++.+....++.=+++.+...+ +++.--+|..|+|+++.+++.+ .+....-..+....
T Consensus 431 ~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f-~s~~g~Lrarac~vl~~~~~~d--f~d~~~l~~ale~t 507 (1010)
T KOG1991|consen 431 NPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEF-QSPYGYLRARACWVLSQFSSID--FKDPNNLSEALELT 507 (1010)
T ss_pred ChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhh-cCchhHHHHHHHHHHHHHHhcc--CCChHHHHHHHHHH
Confidence 4555666777777665421 122334444444666667777 4666789999999999999532 22222222367777
Q ss_pred HHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhc--CChhhHHhhhcCCCCHHHHHHHHH-HHHHhhcCCCCCCChh
Q psy12605 137 LRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINM--GVVPPLLSFIKPDIPISFLRNVTW-VIVNLCRNKDPPPSMS 212 (845)
Q Consensus 137 ~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~-~L~~l~~~~~~~~~~~ 212 (845)
.+.|. +.+-.++..|+-+|..+..+.+.....+... +.++.++.+.+.-.. +.....+. .++.++..-. +-...
T Consensus 508 ~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~En-d~Lt~vme~iV~~fseEls-PfA~e 585 (1010)
T KOG1991|consen 508 HNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEN-DDLTNVMEKIVCKFSEELS-PFAVE 585 (1010)
T ss_pred HHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHhhc-hhHHH
Confidence 77777 7788999999999999987776554444432 234445555554433 22333222 2333332111 11112
Q ss_pred HHhhHHHHHHhhccc---CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh------cCChhhHHHHHhcC
Q psy12605 213 TIIELLPALNILIHH---HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT------DGGNDQIQMVIDSG 283 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~------~~~~~~~~~~~~~g 283 (845)
........+.+++.. .++....+++ .|..+|..+. +..++..+.+ +..
T Consensus 586 L~q~La~~F~k~l~~~~~~~~~~ddk~i----------------------aA~GiL~Ti~Til~s~e~~p~vl~~l-e~~ 642 (1010)
T KOG1991|consen 586 LCQNLAETFLKVLQTSEDEDESDDDKAI----------------------AASGILRTISTILLSLENHPEVLKQL-EPI 642 (1010)
T ss_pred HHHHHHHHHHHHHhccCCCCccchHHHH----------------------HHHHHHHHHHHHHHHHhccHHHHHHH-HHH
Confidence 223455555666653 2222111111 1222222211 1223333332 444
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+++.+-..|.+.-.++-+.++..+.+++....+..-.+= |.++.+.+.+.....+--....-+|.|......+ .+
T Consensus 643 ~l~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~~Isp~mW--~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~---~~ 717 (1010)
T KOG1991|consen 643 VLPVIGFILKNDITDFYEELLEIVSSLTFLSKEISPIMW--GLLELILEVFQDDGIDYFTDMMPALHNYVTYGTP---SL 717 (1010)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhhhhhhhcccCHHHH--HHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCch---hh
Confidence 555555566666677777888887777654332211111 3455566666555555555666667765432221 11
Q ss_pred Hh-cCChHH----HHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh----C--CCCHHHHH
Q psy12605 364 ID-AGLLPK----IIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL----M--SPHSNVCE 432 (845)
Q Consensus 364 ~~-~~~i~~----Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL----~--~~~~~v~~ 432 (845)
.. ...... +-.++.+.. ....=...|+..+..+.-........ .+|.++++. . .++...+.
T Consensus 718 ~s~~~y~~il~~i~~~~l~~e~---~~D~d~~~a~kLle~iiL~~kg~~dq-----~iplf~~~a~~~l~~~~e~s~~~~ 789 (1010)
T KOG1991|consen 718 LSNPDYLQILLEIIKKVLTSEN---GEDSDCESACKLLEVIILNCKGLLDQ-----YIPLFLELALSRLTREVETSELRV 789 (1010)
T ss_pred hccchHHHHHHHHHHHHHcCCC---CchHHHHHHHHHHHHHHHHhcCcHhh-----HhHHHHHHHHHHHhccccchHHHH
Confidence 11 111222 222233221 01122233555555543322111111 255544433 2 25666777
Q ss_pred HHHHHHHHhhcCChH-HHHHHHhCCChHH----HHhccCCCCChhHHHHHHHHHHHhhcC-CCCCCChhHHHhHHHHHHH
Q psy12605 433 QAVWALGNIIGDGPQ-LRDYVINMGVVPP----LLSFIKPDIPISFLRNVTWVIVNLCRN-KDPPPSMSTIIELLPALNI 506 (845)
Q Consensus 433 ~a~~~L~nl~~~~~~-~~~~l~~~g~l~~----L~~ll~~~~~~~~~~~~~~~l~nL~~~-~~~~~~~~~~~~~l~~l~~ 506 (845)
.++.+..|.-..+|. .-..+.+.|.... ..+.+......--++.|+-.|.-++.- ..+.-....+.++.+++..
T Consensus 790 ~~leVvinalyynP~ltL~iLe~~~~~~~ff~~wf~~~~~~~~~HDkKlcvL~l~tli~l~~~~~~~~e~l~~l~~~lv~ 869 (1010)
T KOG1991|consen 790 MLLEVVINALYYNPKLTLGILENQGFLNNFFTLWFQFINQFKKVHDKKLCVLGLLTLISLGQDPQLPSEVLGQLGPALVE 869 (1010)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHcCCcccHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence 777766655555544 3444445554333 223332221122244555556655554 4444455555677777776
Q ss_pred hhcCCC
Q psy12605 507 LIHHHD 512 (845)
Q Consensus 507 ll~~~d 512 (845)
++..-.
T Consensus 870 L~~~Lp 875 (1010)
T KOG1991|consen 870 LLLSLP 875 (1010)
T ss_pred HHHHHH
Confidence 666443
|
|
| >PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ] | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0067 Score=61.47 Aligned_cols=188 Identities=14% Similarity=0.120 Sum_probs=112.2
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHH----HHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHH
Q psy12605 184 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL----PALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259 (845)
Q Consensus 184 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l----~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (845)
.+.+=+.+..++..|..++.+..+..........+ ..+...+.+.... +..
T Consensus 17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~-------------------------v~~ 71 (228)
T PF12348_consen 17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSK-------------------------VSK 71 (228)
T ss_dssp T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----------------------------HHH
T ss_pred CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHH-------------------------HHH
Confidence 33355677778888888887662222212222222 3444444444444 778
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCch
Q psy12605 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339 (845)
Q Consensus 260 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 339 (845)
.||.++..++..-....+.+ -..+++.|+..+.+++.-++..|..+|..++......... .++.+...+.++++
T Consensus 72 ~A~~~l~~l~~~l~~~~~~~-~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~-----~~~~l~~~~~~Kn~ 145 (228)
T PF12348_consen 72 TACQLLSDLARQLGSHFEPY-ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI-----LLEILSQGLKSKNP 145 (228)
T ss_dssp HHHHHHHHHHHHHGGGGHHH-HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH-----HHHHHHHHTT-S-H
T ss_pred HHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH-----HHHHHHHHHhCCCH
Confidence 89999988877655444444 3367888999999988999999999999998764411111 14566777788999
Q ss_pred hhHHHHHHHHHHhhcCCh---HHHH-HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH
Q psy12605 340 KICKEAVWFLSNITAGNQ---AQVQ-AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT 407 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~~---~~~~-~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (845)
.+|..++..+..+....+ .... ...-..+++.+...+.+. ++++|..|-.++..+...-++..
T Consensus 146 ~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~-----~~~VR~~Ar~~~~~l~~~~~~~a 212 (228)
T PF12348_consen 146 QVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDA-----DPEVREAARECLWALYSHFPERA 212 (228)
T ss_dssp HHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS------HHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCC-----CHHHHHHHHHHHHHHHHHCCHhh
Confidence 999999999988866544 1111 111134667777777774 89999999999998866544433
|
The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A. |
| >KOG2062|consensus | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.15 Score=57.33 Aligned_cols=99 Identities=16% Similarity=0.116 Sum_probs=65.6
Q ss_pred ccchHHh-hcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHH
Q psy12605 585 LSHFPAL-LTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVF 663 (845)
Q Consensus 585 l~~L~~l-l~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (845)
+..|..+ +++.+.+||+.|..+|+-++..+++. +|..+++|.
T Consensus 556 ir~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~---------~~s~V~lLs---------------------------- 598 (929)
T KOG2062|consen 556 IRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ---------LPSTVSLLS---------------------------- 598 (929)
T ss_pred HHHhhcccccccchHHHHHHHHHheeeEecChhh---------chHHHHHHh----------------------------
Confidence 3334344 45678999999999999999887764 455666663
Q ss_pred HHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHH
Q psy12605 664 LQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPF 743 (845)
Q Consensus 664 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L 743 (845)
++.++.||..++.+|+-.|...-....-.+ |
T Consensus 599 -----------------------------------------es~N~HVRyGaA~ALGIaCAGtG~~eAi~l--------L 629 (929)
T KOG2062|consen 599 -----------------------------------------ESYNPHVRYGAAMALGIACAGTGLKEAINL--------L 629 (929)
T ss_pred -----------------------------------------hhcChhhhhhHHHHHhhhhcCCCcHHHHHH--------H
Confidence 788999999999999999943222221111 1
Q ss_pred hhhhccccHHHHHHHHHHHHHHHHhh
Q psy12605 744 CDLLSCKDAQVIQVVLDGINNMLKMA 769 (845)
Q Consensus 744 ~~~L~~~d~~~~~~al~~L~~l~~~~ 769 (845)
-.+..+...=|+..|+-++.-++...
T Consensus 630 epl~~D~~~fVRQgAlIa~amIm~Q~ 655 (929)
T KOG2062|consen 630 EPLTSDPVDFVRQGALIALAMIMIQQ 655 (929)
T ss_pred hhhhcChHHHHHHHHHHHHHHHHHhc
Confidence 12333444557777777777766544
|
|
| >PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.33 Score=53.99 Aligned_cols=355 Identities=17% Similarity=0.168 Sum_probs=181.5
Q ss_pred hHHHHHhhCCCCh---hHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 133 VPLFLRLLMSPHS---NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 133 i~~L~~lL~s~~~---~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
+|.++..|.+.++ .-.+.++.+|+.+|.+.. .-+.+.- ..+..+-.......+.+....++.+|.++........
T Consensus 1 ~p~ll~~Lpd~~~~~~~~~~~~L~~l~~ls~~~~-i~~~~~~-~ll~kl~~~~~~~~~~~~~~~il~tl~~~~~~~~~~~ 78 (415)
T PF12460_consen 1 LPALLALLPDSDSSTDSNYERILEALAALSTSPQ-ILETLSI-RLLNKLSIVCQSESSSDYCHAILSTLQSLLEKKQEDK 78 (415)
T ss_pred CchHHhhCCCCCCcchhHHHHHHHHHHHHHCChh-HHHHHHH-HHHHHHHHHhcCCCChHHHHHHHHHHHHHHHhccccc
Confidence 4778888877655 678899999999996644 3333221 2334444444444455677788888888776553333
Q ss_pred ---ChhHHh--hHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcC
Q psy12605 210 ---SMSTII--ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSG 283 (845)
Q Consensus 210 ---~~~~~~--~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g 283 (845)
...... ..+|.+..+.........- .++ .+...+...+..+... +.+..+.+
T Consensus 79 ~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~--------~~~----------~~L~~~~~l~~~iv~~l~~~~q~~~---- 136 (415)
T PF12460_consen 79 QFEDNSWYFHRILVPRLFELALQASDQSSD--------LDD----------RVLELLSRLINLIVRSLSPEKQQEI---- 136 (415)
T ss_pred ccchHHHHHHhHHHHHHHHHHHhhcccccc--------cch----------HHHHHHHHHHHHHHHhCCHHHHHHH----
Confidence 222222 3677776665432111000 000 1333333333333222 11211122
Q ss_pred chhhHHhhcc----------------CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc-CCchhhHHHHH
Q psy12605 284 VVPSLIPLLS----------------HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT-HPKEKICKEAV 346 (845)
Q Consensus 284 ~i~~Lv~lL~----------------~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~ 346 (845)
+..+..+.- ........-...+++.+-....-. .....+..++.+.. ..++..+..++
T Consensus 137 -~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~~~~----~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 137 -LDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDVSLP----DLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred -HHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCcccCcc----CHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 222222221 011222233334444443221100 00124556666654 45678888888
Q ss_pred HHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh-cCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 347 WFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA-SGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 347 ~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
.+++-++-.-++. + . -.+++..+...+.........+..-.-..|+...+. ++++... ..+..|+.++.+
T Consensus 212 ~~la~LvNK~~~~-~-~-l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~------~~~~~L~~lL~~ 282 (415)
T PF12460_consen 212 QLLASLVNKWPDD-D-D-LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLAT------ELLDKLLELLSS 282 (415)
T ss_pred HHHHHHHcCCCCh-h-h-HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchHH------HHHHHHHHHhCC
Confidence 8888775542111 0 0 011222333222111111112223333445555544 3443322 235567777777
Q ss_pred CCHHHHHHHHHHHHHhhcCChHH--------HHHHHhCC----ChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCC
Q psy12605 426 PHSNVCEQAVWALGNIIGDGPQL--------RDYVINMG----VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 493 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~~~~--------~~~l~~~g----~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~ 493 (845)
+++...++.+++-+..+.+.+ .+.+.+.. .++.|++.++...+ +.+.+...+++.+..+.+...-
T Consensus 283 --~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~-~~k~~yL~ALs~ll~~vP~~vl 359 (415)
T PF12460_consen 283 --PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADD-EIKSNYLTALSHLLKNVPKSVL 359 (415)
T ss_pred --hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcCh-hhHHHHHHHHHHHHhhCCHHHH
Confidence 778888999999888874333 23333443 34455555544443 3677788899999987754444
Q ss_pred hhHHHhHHHHHHHhhcCCChhHHHHHH---HHhhhcCc
Q psy12605 494 MSTIIELLPALNILIHHHDTSVSIYLW---LSIIEKNP 528 (845)
Q Consensus 494 ~~~~~~~l~~l~~ll~~~d~~v~~~~~---l~~l~~~~ 528 (845)
...+...+|.+.+-+...|.++....+ ...+.+.+
T Consensus 360 ~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~ 397 (415)
T PF12460_consen 360 LPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAP 397 (415)
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCH
Confidence 566677999999999888888776644 33444443
|
MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription []. |
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.55 Score=54.31 Aligned_cols=239 Identities=12% Similarity=0.082 Sum_probs=150.7
Q ss_pred CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHH
Q psy12605 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPA 220 (845)
Q Consensus 141 ~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 220 (845)
.+..|.+.-.+.++++..+...+.+...+.. .+...++.+..+.+..++..|+.+++..|+- ........+++..
T Consensus 460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 460 YQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKV---KVLLSLQPMILDG 534 (1005)
T ss_pred cccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCc---eeccccchHHHHH
Confidence 3445666668899988777553333332221 2344555665555556777788888777732 2222334456666
Q ss_pred HHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc--cCCchh
Q psy12605 221 LNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL--SHKEVK 298 (845)
Q Consensus 221 L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL--~~~~~~ 298 (845)
|.++......+ +......+|+.....+++... ..++.++|.++.+. .+.++.
T Consensus 535 L~qlas~~s~e-------------------------vl~llmE~Ls~vv~~dpef~a-s~~skI~P~~i~lF~k~s~DP~ 588 (1005)
T KOG2274|consen 535 LLQLASKSSDE-------------------------VLVLLMEALSSVVKLDPEFAA-SMESKICPLTINLFLKYSEDPQ 588 (1005)
T ss_pred HHHHcccccHH-------------------------HHHHHHHHHHHHhccChhhhh-hhhcchhHHHHHHHHHhcCCch
Confidence 66666555555 555556666666666665433 33667777776666 456777
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc----hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHH
Q psy12605 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK----EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA 374 (845)
Q Consensus 299 v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~ 374 (845)
+...+-.++..++.. ......+. ...+|.++..|..+. .....-+.-.|..+..+.+......+-.-..|++.+
T Consensus 589 V~~~~qd~f~el~q~-~~~~g~m~-e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak 666 (1005)
T KOG2274|consen 589 VASLAQDLFEELLQI-AANYGPMQ-ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAK 666 (1005)
T ss_pred HHHHHHHHHHHHHHH-HHhhcchH-HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHh
Confidence 887787787777642 11111121 247899999997654 566677777777777766655555555567888888
Q ss_pred HhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCCh
Q psy12605 375 NLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416 (845)
Q Consensus 375 lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i 416 (845)
+.-.. ++..+-..+..||..+.+.+.+....--..++.
T Consensus 667 ~tlHs----dD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~ 704 (1005)
T KOG2274|consen 667 ITLHS----DDHETLQNATECLRALISVTLEQLLTWHDEPGH 704 (1005)
T ss_pred heeec----CChHHHHhHHHHHHHHHhcCHHHHHhhccCCCc
Confidence 88655 578888999999999988776655444444443
|
|
| >COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.069 Score=53.91 Aligned_cols=295 Identities=14% Similarity=0.099 Sum_probs=166.6
Q ss_pred hHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhc-CChhhHHhhh
Q psy12605 104 NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFI 182 (845)
Q Consensus 104 ~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~-g~i~~Lv~ll 182 (845)
..+..-+.++....+.++-....-.. =..+.|-++++.-++-.+.-|+.||.++... ++.|..+... ..-..++..+
T Consensus 123 ~~k~~f~~vf~~~~~~~~~~v~~~~~-LfleyLgkl~Q~i~~lTrlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l 200 (432)
T COG5231 123 KHKKEFLSVFKQMLKDNTSYVESNYL-LFLEYLGKLSQLIDFLTRLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEIL 200 (432)
T ss_pred HHHHHHHHHHHHHccCchHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHH
Confidence 34555556666655544332221000 0123344455555666788899999999854 6777776543 3445666777
Q ss_pred cCCC-CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHH
Q psy12605 183 KPDI-PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDT 261 (845)
Q Consensus 183 ~~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 261 (845)
++.. ..+++.+..-++.-+.-+....+........+..++++.+..-. +++..-+
T Consensus 201 ~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli~iVk~~~k------------------------eKV~Rlc 256 (432)
T COG5231 201 QNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLIAIVKERAK------------------------EKVLRLC 256 (432)
T ss_pred HhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHH------------------------HHHHHHH
Confidence 6543 35788888888887776654333333344555555555553221 2366778
Q ss_pred HHHHHHhhc-CChhhHHHHHhcCchhhHHhhccC---CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchh-hHhhcC
Q psy12605 262 VWALSYLTD-GGNDQIQMVIDSGVVPSLIPLLSH---KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF-PALLTH 336 (845)
Q Consensus 262 ~~~L~~l~~-~~~~~~~~~~~~g~i~~Lv~lL~~---~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L-~~lL~~ 336 (845)
+..+.++.+ .....+..+.-.|-+.+.++.|.. .+++++...=+.=..+.....+.. ..+. .+..| ...+.
T Consensus 257 ~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~--~fD~-Y~~ELdsg~l~- 332 (432)
T COG5231 257 CGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC--IFDN-YLNELDSGRLE- 332 (432)
T ss_pred HHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh--HHHH-HHHHHhhCccc-
Confidence 888888776 333444443344545566666632 244444332222122211111100 0000 00000 01111
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHh--cCChHHHHHHhhhcccccCChh-HHHHHHHHHHHHhcCChHhHHHHHHc
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVID--AGLLPKIIANLQKVGRIVLRPN-LQFEAAWALTNIASGTSAQTQEVVAA 413 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~Lv~lL~~~~~~~~~~~-v~~~a~~~L~~l~~~~~~~~~~l~~~ 413 (845)
-+|..+....| .++.+.+.+ ..++..|.++++.. ++. ....||.-+..+....|+....+...
T Consensus 333 wSp~H~~~dFW---------s~N~d~l~kdny~i~k~L~~~lq~n-----~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Ky 398 (432)
T COG5231 333 WSPYHHKKDFW---------STNLDMLIKDNYEIVKVLKKYLQSN-----NPNTWICVACSDIFQLVRASPEINAVLSKY 398 (432)
T ss_pred CCCcccccCch---------hhhHHHHhhhhHHHHHHHHHHHhcC-----CCCceEeeeHhhHHHHHHhCchHHHHHHHh
Confidence 12222222222 122233333 34678889999875 333 45668888889999999999999999
Q ss_pred CChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 414 GAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 414 g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
|+-+.+..++++++++|+-.|+.++..+.
T Consensus 399 g~k~~im~L~nh~d~~VkfeAl~a~q~~i 427 (432)
T COG5231 399 GVKEIIMNLINHDDDDVKFEALQALQTCI 427 (432)
T ss_pred hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 99999999999999999999999886654
|
|
| >smart00185 ARM Armadillo/beta-catenin-like repeats | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.0037 Score=43.50 Aligned_cols=38 Identities=42% Similarity=0.687 Sum_probs=35.2
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
+.+..+++.|+++.|++++.+++++++..++|+|+|++
T Consensus 3 ~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 3 EQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 46778889999999999999999999999999999986
|
Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin. |
| >PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway [] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.099 Score=58.27 Aligned_cols=197 Identities=15% Similarity=0.102 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC-----chhhHHHHHHHHHHHhcCChhhHHHHhc-CCccchh
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK-----EVKVQTASLRAVGNIVTGTDEQTQVILN-CDALSHF 330 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-----~~~v~~~al~~L~nl~~~~~~~~~~i~~-~~~l~~L 330 (845)
+...|+.||+|+...++..++.+.+.|..+.++..|+.. +.++.-...+.|--++......+..+++ .+++..+
T Consensus 48 v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l 127 (446)
T PF10165_consen 48 VSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELL 127 (446)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHH
Confidence 888999999999999998889999999999999999665 6778888888888887766666655554 4777777
Q ss_pred hHhhcC-----------------CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhc---c-cccCChhHH
Q psy12605 331 PALLTH-----------------PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV---G-RIVLRPNLQ 389 (845)
Q Consensus 331 ~~lL~~-----------------~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~---~-~~~~~~~v~ 389 (845)
...+.. .+.....+++..+.|+..+.+.... -.....++.++..+..- . .........
T Consensus 128 ~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit~~~~~~~~-~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~ 206 (446)
T PF10165_consen 128 TEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNITLHYPKSVP-EEFSPSIPHLVSILRRLLPPPPSSPPLDPPH 206 (446)
T ss_pred HHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhhhccCcccc-hhhhHHHHHHHHHHHHHhccCCCCCcchhhH
Confidence 776511 1334556788899999776655432 01233455555554432 1 111345667
Q ss_pred HHHHHHHHHHhcCChHh-------HH----HHHHcCChHHHHHhhCC-----C---CHHHHHHHHHHHHHhhcCChHHHH
Q psy12605 390 FEAAWALTNIASGTSAQ-------TQ----EVVAAGAVPLFLRLLMS-----P---HSNVCEQAVWALGNIIGDGPQLRD 450 (845)
Q Consensus 390 ~~a~~~L~~l~~~~~~~-------~~----~l~~~g~i~~Lv~lL~~-----~---~~~v~~~a~~~L~nl~~~~~~~~~ 450 (845)
..+..+|.|+--.+... .. .......+..|+.+|+. . -.+.....+.+|.+++..+...|+
T Consensus 207 ~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk 286 (446)
T PF10165_consen 207 SHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRK 286 (446)
T ss_pred HHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHH
Confidence 77888888773221111 00 00111234556666542 1 235677888999999988888887
Q ss_pred HHHh
Q psy12605 451 YVIN 454 (845)
Q Consensus 451 ~l~~ 454 (845)
.+..
T Consensus 287 ~lr~ 290 (446)
T PF10165_consen 287 YLRA 290 (446)
T ss_pred HHHH
Confidence 7654
|
It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion. |
| >KOG0414|consensus | Back alignment and domain information |
|---|
Probab=96.68 E-value=2.3 Score=50.99 Aligned_cols=140 Identities=14% Similarity=0.139 Sum_probs=96.6
Q ss_pred cccchHHhhcC----CChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHH
Q psy12605 584 ALSHFPALLTH----PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQ 659 (845)
Q Consensus 584 ~l~~L~~ll~~----~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 659 (845)
+.|.+..+... ++|+++..|.-+|+.+..-+.+.+. .-+|.|+..+.
T Consensus 920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fce-----s~l~llftime------------------------ 970 (1251)
T KOG0414|consen 920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCE-----SHLPLLFTIME------------------------ 970 (1251)
T ss_pred HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHH-----HHHHHHHHHHh------------------------
Confidence 45666666643 4799999999999998765443332 12455655552
Q ss_pred HHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCC
Q psy12605 660 MSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGV 739 (845)
Q Consensus 660 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~ 739 (845)
.+.+|.+|..+..+++.++ .+-|. +++ -.
T Consensus 971 ---------------------------------------------ksp~p~IRsN~VvalgDla-v~fpn----lie-~~ 999 (1251)
T KOG0414|consen 971 ---------------------------------------------KSPSPRIRSNLVVALGDLA-VRFPN----LIE-PW 999 (1251)
T ss_pred ---------------------------------------------cCCCceeeecchheccchh-hhccc----ccc-hh
Confidence 4777888888888888887 22221 111 34
Q ss_pred chHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhc
Q psy12605 740 IPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812 (845)
Q Consensus 740 i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 812 (845)
-+.|++.|.+.++.+++.|+-.|..|+- ..++.--|-+..+..++.+++++++..|...+..+-
T Consensus 1000 T~~Ly~rL~D~~~~vRkta~lvlshLIL---------ndmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen 1000 TEHLYRRLRDESPSVRKTALLVLSHLIL---------NDMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred hHHHHHHhcCccHHHHHHHHHHHHHHHH---------hhhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence 4567778888888899998888888874 346667777777888888888888888885554443
|
|
| >PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10 | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.013 Score=49.66 Aligned_cols=67 Identities=16% Similarity=0.311 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 388 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM--SPHSNVCEQAVWALGNIIGDGPQLRDYVIN 454 (845)
Q Consensus 388 v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 454 (845)
.|.....+++|++..++..+..+.+.|+++.++.... ..+|-++++|++++.|++..+++.++.+.+
T Consensus 2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~ 70 (102)
T PF09759_consen 2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQ 70 (102)
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 4667888999999999999999999999999998764 568899999999999999999988877654
|
Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region []. |
| >KOG0567|consensus | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.072 Score=52.62 Aligned_cols=91 Identities=18% Similarity=0.280 Sum_probs=66.9
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
+..+.+...+.+...+-+.+.+|+.. .....++.|+..+.+.. ..+-+|.+|+.+|+++..
T Consensus 38 i~~i~ka~~d~s~llkhe~ay~LgQ~-----------~~~~Av~~l~~vl~des---q~pmvRhEAaealga~~~----- 98 (289)
T KOG0567|consen 38 IKAITKAFIDDSALLKHELAYVLGQM-----------QDEDAVPVLVEVLLDES---QEPMVRHEAAEALGAIGD----- 98 (289)
T ss_pred HHHHHHhcccchhhhccchhhhhhhh-----------ccchhhHHHHHHhcccc---cchHHHHHHHHHHHhhcc-----
Confidence 45555555555555666666777664 24567899999998765 578899999999999862
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
....+.+-++.+++...|++.+..++..+-
T Consensus 99 ------~~~~~~l~k~~~dp~~~v~ETc~lAi~rle 128 (289)
T KOG0567|consen 99 ------PESLEILTKYIKDPCKEVRETCELAIKRLE 128 (289)
T ss_pred ------hhhHHHHHHHhcCCccccchHHHHHHHHHH
Confidence 235677778888888899999888888775
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.023 Score=48.20 Aligned_cols=94 Identities=15% Similarity=0.284 Sum_probs=69.3
Q ss_pred chhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHH
Q psy12605 711 TQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIE 790 (845)
Q Consensus 711 ~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~ 790 (845)
.|+.+.+.|..++. +-++......+ .++++++..++++|.+++..|..+|+++.+......-.+. ....+.|.
T Consensus 2 ~R~ggli~Laa~ai-~l~~~~~~~l~-~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f-----~~IF~~L~ 74 (97)
T PF12755_consen 2 YRKGGLIGLAAVAI-ALGKDISKYLD-EILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYF-----NEIFDALC 74 (97)
T ss_pred chhHHHHHHHHHHH-HchHhHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 46778888888873 33344444443 6899999999999999999999999999987665432222 23457888
Q ss_pred hhhcCCCHHHHHHHHHHHHHhc
Q psy12605 791 MLQNHENVEIYKLAYDIIERYF 812 (845)
Q Consensus 791 ~l~~~~~~~v~~~a~~~l~~~~ 812 (845)
.+...+++.|+.-| ++|.+.+
T Consensus 75 kl~~D~d~~Vr~~a-~~Ld~ll 95 (97)
T PF12755_consen 75 KLSADPDENVRSAA-ELLDRLL 95 (97)
T ss_pred HHHcCCchhHHHHH-HHHHHHh
Confidence 89999999988777 5565543
|
|
| >KOG1078|consensus | Back alignment and domain information |
|---|
Probab=96.59 E-value=2 Score=49.16 Aligned_cols=247 Identities=16% Similarity=0.140 Sum_probs=126.3
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHH
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI 214 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 214 (845)
.+.+++++.+..+|...-.++..++.-+++.- + +...+..-.... +...+..|+.+|..+..+.. .
T Consensus 68 ~~tKlfQskd~~LRr~vYl~Ikels~isedvi---i---vtsslmkD~t~~-~d~yr~~AiR~L~~I~d~~m-------~ 133 (865)
T KOG1078|consen 68 AITKLFQSKDVSLRRMVYLAIKELSKISEDVI---I---VTSSLMKDMTGK-EDLYRAAAIRALCSIIDGTM-------L 133 (865)
T ss_pred HHHHHHhhcCHHHHHHHHHHHhhccccchhhh---h---hhHHHHhhccCC-CcchhHHHHHHHHhhcCcch-------h
Confidence 45577888888888888888888886554321 1 233344333333 33567777777777664431 1
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH 294 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 294 (845)
.++-..+-+.+-+..+. +...|+-.=.++...+.+..+. ...-..+...+
T Consensus 134 ~~iery~kqaivd~~~a-------------------------vSsaalvss~hll~~~~~~vkr-----w~neiqea~~s 183 (865)
T KOG1078|consen 134 QAIERYMKQAIVDKNPA-------------------------VSSAALVSSYHLLPISFDVVKR-----WANEVQEAVNS 183 (865)
T ss_pred HHHHHHHHhHeeccccc-------------------------cchHHHHHHhhhhcccHHHHHH-----HHHhhhhccCc
Confidence 22222333333333333 2222222112222222221111 11112222233
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhH-HHHHHHHHHhhcCChHHHHHHHhcCChHHHH
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKIC-KEAVWFLSNITAGNQAQVQAVIDAGLLPKII 373 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~-~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv 373 (845)
.+.-+|.-|++.|..+-..+.- ++..++..+.++. ++ ..|.|.+-.++...-+.. .....-..+.+=
T Consensus 184 ~~~m~QyHalglLyqirk~drl---------a~sklv~~~~~~~--~~~~~A~~~lir~~~~~l~~~-~~~~s~~~~fl~ 251 (865)
T KOG1078|consen 184 DNIMVQYHALGLLYQIRKNDRL---------AVSKLVQKFTRGS--LKSPLAVCMLIRIASELLKEN-QQADSPLFPFLE 251 (865)
T ss_pred HHHHHHHHHHHHHHHHHhhhHH---------HHHHHHHHHcccc--ccchhHHHHHHHHHHHHhhhc-ccchhhHHHHHH
Confidence 4445778888888887543211 2233344333311 11 112233332211111100 000111234444
Q ss_pred HHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChH
Q psy12605 374 ANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ 447 (845)
Q Consensus 374 ~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~ 447 (845)
.++.+ ....+..+|+.++.++....+..... .+..|--++.++..-+|-+|..+|..++...|.
T Consensus 252 s~l~~-----K~emV~~EaArai~~l~~~~~r~l~p-----avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~ 315 (865)
T KOG1078|consen 252 SCLRH-----KSEMVIYEAARAIVSLPNTNSRELAP-----AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQ 315 (865)
T ss_pred HHHhc-----hhHHHHHHHHHHHhhccccCHhhcch-----HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCc
Confidence 44544 36788899999999987654332222 677888889999999999999999999876553
|
|
| >KOG2062|consensus | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.065 Score=60.05 Aligned_cols=289 Identities=16% Similarity=0.177 Sum_probs=151.9
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
++..|.+.|+..+++.+|.-++--|+-.+.++.. . ..-+.|-..|..++.-.-+.|.-++|-+...+. +.+
T Consensus 414 ~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa~--~-----eiYe~lKevLy~D~AvsGEAAgi~MGl~mlGt~-~~e- 484 (929)
T KOG2062|consen 414 ITDYLLQQLKTAENEVVRHGACLGLGLAGMGSAN--E-----EIYEKLKEVLYNDSAVSGEAAGIAMGLLMLGTA-NQE- 484 (929)
T ss_pred HHHHHHHHHHhccchhhhhhhhhhccchhccccc--H-----HHHHHHHHHHhccchhhhhHHHHhhhhHhhCcC-cHH-
Confidence 4555666665555556666655544433332211 0 122233344444444445555555555543321 111
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
++.-++..-.+.....+.|...--++-..-+. .+.+=+.+-+++.+.||-
T Consensus 485 -----aiedm~~Ya~ETQHeki~RGl~vGiaL~~ygr--------qe~Ad~lI~el~~dkdpi----------------- 534 (929)
T KOG2062|consen 485 -----AIEDMLTYAQETQHEKIIRGLAVGIALVVYGR--------QEDADPLIKELLRDKDPI----------------- 534 (929)
T ss_pred -----HHHHHHHHhhhhhHHHHHHHHHHhHHHHHhhh--------hhhhHHHHHHHhcCCchh-----------------
Confidence 13333444333334445443222222211111 234556666677777666
Q ss_pred HhhhhhHHHHHHHHHHH--HHhhcCChhhHHHHHhcCchhhHHhh-ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCC
Q psy12605 249 KILVSKMKILVDTVWAL--SYLTDGGNDQIQMVIDSGVVPSLIPL-LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCD 325 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L--~~l~~~~~~~~~~~~~~g~i~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~ 325 (845)
++.....++ +|...+ +.+++..|++. ..+.+.+|+.+|.-+||-++..+++
T Consensus 535 --------lR~~Gm~t~alAy~GTg---------nnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~--------- 588 (929)
T KOG2062|consen 535 --------LRYGGMYTLALAYVGTG---------NNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPE--------- 588 (929)
T ss_pred --------hhhhhHHHHHHHHhccC---------chhhHHHhhcccccccchHHHHHHHHHheeeEecChh---------
Confidence 444444333 233222 23556667776 5778999999999999999877554
Q ss_pred ccchhhHhhc-CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 326 ALSHFPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 326 ~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
..+..+.+|+ +-++.+|..++.+|+=.|++.-... .+. |++-|.+. ...-||..|+-+++-+.....
T Consensus 589 ~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~e-------Ai~-lLepl~~D----~~~fVRQgAlIa~amIm~Q~t 656 (929)
T KOG2062|consen 589 QLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKE-------AIN-LLEPLTSD----PVDFVRQGALIALAMIMIQQT 656 (929)
T ss_pred hchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHH-------HHH-HHhhhhcC----hHHHHHHHHHHHHHHHHHhcc
Confidence 3566778885 4689999999999998877654321 111 22222222 356788888888877654332
Q ss_pred -HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccC
Q psy12605 405 -AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK 466 (845)
Q Consensus 405 -~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~ 466 (845)
..+..+ .++...+.+.+.+.+++.-..--.+ ..+-+.+.|+-..-+++-.
T Consensus 657 ~~~~pkv--~~frk~l~kvI~dKhEd~~aK~GAi----------lAqGildaGGrNvtislqs 707 (929)
T KOG2062|consen 657 EQLCPKV--NGFRKQLEKVINDKHEDGMAKFGAI----------LAQGILDAGGRNVTISLQS 707 (929)
T ss_pred cccCchH--HHHHHHHHHHhhhhhhHHHHHHHHH----------HHhhhhhcCCceEEEEEec
Confidence 222111 2455667777776665533221111 2234555666555555543
|
|
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.21 Score=56.06 Aligned_cols=118 Identities=19% Similarity=0.202 Sum_probs=76.7
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhc
Q psy12605 93 LVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 172 (845)
Q Consensus 93 Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~ 172 (845)
++..-+ .++..+..|+..+..+.+.-|+.... ++..+++|+.+.+..||.+|++.|..+|.+.++....+
T Consensus 28 il~~~k--g~~k~K~Laaq~I~kffk~FP~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~kv--- 97 (556)
T PF05918_consen 28 ILDGVK--GSPKEKRLAAQFIPKFFKHFPDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSKV--- 97 (556)
T ss_dssp HHHGGG--S-HHHHHHHHHHHHHHHCC-GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHHH---
T ss_pred HHHHcc--CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhHH---
Confidence 344443 45788999999999998887887765 67889999999999999999999999999887776665
Q ss_pred CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcc---cCCch
Q psy12605 173 GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH---HHDTS 231 (845)
Q Consensus 173 g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~---~~~~~ 231 (845)
.+.|+.+|..+.+ .....+-++|..+.+.+ ..+.+..++..+. ..|..
T Consensus 98 --aDvL~QlL~tdd~-~E~~~v~~sL~~ll~~d--------~k~tL~~lf~~i~~~~~~de~ 148 (556)
T PF05918_consen 98 --ADVLVQLLQTDDP-VELDAVKNSLMSLLKQD--------PKGTLTGLFSQIESSKSGDEQ 148 (556)
T ss_dssp --HHHHHHHTT---H-HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHH---HS-HH
T ss_pred --HHHHHHHHhcccH-HHHHHHHHHHHHHHhcC--------cHHHHHHHHHHHHhcccCchH
Confidence 4678889987643 45555666676666544 2345555554444 34554
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG0414|consensus | Back alignment and domain information |
|---|
Probab=96.44 E-value=2.8 Score=50.38 Aligned_cols=59 Identities=12% Similarity=0.192 Sum_probs=44.7
Q ss_pred CCCCccchhHHHHHHHhhcccCCHHHHHHHH-HcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhH
Q psy12605 705 PQGEFQTQKEAAWAISNLTISGNRDQVAKLV-QEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMAD 770 (845)
Q Consensus 705 ~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~-~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~ 770 (845)
.+.++.+|+.|..++.++... .++ -.|.+..+..+|.+++.++...|=.....|...++
T Consensus 1008 ~D~~~~vRkta~lvlshLILn-------dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n 1067 (1251)
T KOG0414|consen 1008 RDESPSVRKTALLVLSHLILN-------DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSSKGN 1067 (1251)
T ss_pred cCccHHHHHHHHHHHHHHHHh-------hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhhccc
Confidence 678889999999999999822 233 56889999999999998888777755555555443
|
|
| >KOG1020|consensus | Back alignment and domain information |
|---|
Probab=96.22 E-value=2.4 Score=52.14 Aligned_cols=126 Identities=13% Similarity=0.138 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
++..|+.||+.+...++... ....+-..+-.-+.+....|+++|+..+|......++.... ....+..-..+
T Consensus 832 lRtkAlKclS~ive~Dp~vL---~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q-----yY~~i~erIlD 903 (1692)
T KOG1020|consen 832 LRTKALKCLSMIVEADPSVL---SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ-----YYDQIIERILD 903 (1692)
T ss_pred HHHHHHHHHHHHHhcChHhh---cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH-----HHHHHHhhcCC
Confidence 88899999999888766432 12222223333445667889999999999877665543332 23345555566
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCCh-hHHHHHHHHHHHH
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRP-NLQFEAAWALTNI 399 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~-~v~~~a~~~L~~l 399 (845)
+...+|+.+...++.+|...++.-. +...+.+.++... ++. .++.-+..++.++
T Consensus 904 tgvsVRKRvIKIlrdic~e~pdf~~------i~~~cakmlrRv~---DEEg~I~kLv~etf~kl 958 (1692)
T KOG1020|consen 904 TGVSVRKRVIKILRDICEETPDFSK------IVDMCAKMLRRVN---DEEGNIKKLVRETFLKL 958 (1692)
T ss_pred CchhHHHHHHHHHHHHHHhCCChhh------HHHHHHHHHHHhc---cchhHHHHHHHHHHHHH
Confidence 7788999999999999887766422 2334455555432 233 3777777777775
|
|
| >KOG2274|consensus | Back alignment and domain information |
|---|
Probab=96.09 E-value=1.7 Score=50.60 Aligned_cols=314 Identities=12% Similarity=0.095 Sum_probs=169.1
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHH
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPL 135 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~ 135 (845)
+.-|.....|.-.+.+..+... .... ...-.+...+..+..+..+-++..|+.+++..|+. +.-.-...+.+..
T Consensus 461 ~e~P~Ll~Ra~~~i~~fs~~~~--~~~~-~~~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~---~vl~~~~p~ild~ 534 (1005)
T KOG2274|consen 461 QESPFLLLRAFLTISKFSSSTV--INPQ-LLQHFLNATVNALTMDVPPPVKISAVRAFCGYCKV---KVLLSLQPMILDG 534 (1005)
T ss_pred ccCHHHHHHHHHHHHHHHhhhc--cchh-HHHHHHHHHHHhhccCCCCchhHHHHHHHHhccCc---eeccccchHHHHH
Confidence 3445555555555555433211 0000 01113555566665566677889999998888842 2222223467888
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhh-cCCCCHHHHHHHHHHHHHhhcCCCCCCChhHH
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI-KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI 214 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll-~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 214 (845)
|+++....+.++-.....+|...+.-+|+.... .+.-+.|..+.+. ...++..+...+--++..++....+... ..
T Consensus 535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as-~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~--m~ 611 (1005)
T KOG2274|consen 535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAAS-MESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGP--MQ 611 (1005)
T ss_pred HHHHcccccHHHHHHHHHHHHHHhccChhhhhh-hhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcc--hH
Confidence 888888888888888888999999887765443 2334556555444 3332335555666667777664432222 35
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCCh-hhHHHHHhcCchhhHHhhc-
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN-DQIQMVIDSGVVPSLIPLL- 292 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~i~~Lv~lL- 292 (845)
..++|.|+..+..++.... +. ...-++..|..+.+..+ ..-+.+ -.-++|++.+..
T Consensus 612 e~~iPslisil~~~~~~~~-----------~~----------l~~~aidvLttvvr~tp~pL~~~l-~~~~FpaVak~tl 669 (1005)
T KOG2274|consen 612 ERLIPSLISVLQLNADKAP-----------AG----------LCAIAIDVLTTVLRNTPSPLPNLL-ICYAFPAVAKITL 669 (1005)
T ss_pred HHHHHHHHHHHcCcccccC-----------ch----------hhHHHHHHHHHHHhcCCCCccHHH-HHHHhHHhHhhee
Confidence 6789999999887652200 00 34445555554444332 222222 234456655554
Q ss_pred cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccc--hhhHhhcC-CchhhHHHHHHHHHHhhcCChHHHHHHHhc---
Q psy12605 293 SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS--HFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDA--- 366 (845)
Q Consensus 293 ~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~--~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~--- 366 (845)
++++..+...+-+||+.+.....+....-...++.. .+++.++. -+++.-..++...+.+...--......+..
T Consensus 670 HsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~el~~n~d 749 (1005)
T KOG2274|consen 670 HSDDHETLQNATECLRALISVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASSELGPNLD 749 (1005)
T ss_pred ecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHHHhchhHH
Confidence 677788889999999998766544322222333333 33333321 122233333334443321111111111111
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
.++..++.-|... ....+......+++++...+.
T Consensus 750 ~IL~Avisrmq~a----e~lsviQsLi~VfahL~~t~~ 783 (1005)
T KOG2274|consen 750 QILRAVISRLQQA----ETLSVIQSLIMVFAHLVHTDL 783 (1005)
T ss_pred HHHHHHHHHHHHh----hhHHHHHHHHHHHHHHhhCCH
Confidence 1344444444443 466777777778888776554
|
|
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.16 Score=58.05 Aligned_cols=175 Identities=17% Similarity=0.168 Sum_probs=129.5
Q ss_pred CchhhHHhhccCCc-hhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 283 GVVPSLIPLLSHKE-VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 283 g~i~~Lv~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.+++++...++... ..-.-.++.++.|++..++..++.+....+++.+-.++...++.++..++..+.|+.-+..-...
T Consensus 541 ~v~~~~~s~~~~d~~~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~ 620 (748)
T KOG4151|consen 541 EVVKPLDSALHNDEKGLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYER 620 (748)
T ss_pred hhhhhhcchhhhhHHHHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHH
Confidence 34555555553322 12234688999999988888888888888888888888888999999999999999888766666
Q ss_pred HHHh-cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH-HHHHcCChHHHHHhhCCCCHHHHHHHHHHHH
Q psy12605 362 AVID-AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ-EVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439 (845)
Q Consensus 362 ~l~~-~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 439 (845)
.+.+ ....+.+..++... ......+++.++..|+......+. ......+...++.++.+++++++...+..+.
T Consensus 621 si~e~~~~l~~w~~~~e~~-----~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~l 695 (748)
T KOG4151|consen 621 SIVEYKDRLKLWNLNLEVA-----DEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIIL 695 (748)
T ss_pred HhhccccCchHHHHHHHhh-----hhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhh
Confidence 6777 56677776666653 567777888888877776666655 4445578899999999999999999999999
Q ss_pred HhhcCChHHHHHHHhCCChHHHH
Q psy12605 440 NIIGDGPQLRDYVINMGVVPPLL 462 (845)
Q Consensus 440 nl~~~~~~~~~~l~~~g~l~~L~ 462 (845)
|+..........+.....+..+.
T Consensus 696 n~~~~~~ei~~~~~~~~~~~~l~ 718 (748)
T KOG4151|consen 696 NLFEALFEIAEKIFETEVMELLS 718 (748)
T ss_pred hHHHHHHHHHHHhccchHHHHHH
Confidence 97766655555555555444443
|
|
| >KOG4535|consensus | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.028 Score=59.63 Aligned_cols=190 Identities=19% Similarity=0.172 Sum_probs=107.4
Q ss_pred CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC----ChH--HHHHHHhcC
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG----NQA--QVQAVIDAG 367 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~----~~~--~~~~l~~~~ 367 (845)
+++.-++.+|+++++-.+.+..-......-......+...+.+..-..|..++|+++|++.. .+. ....-+...
T Consensus 402 ~~~~lv~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ 481 (728)
T KOG4535|consen 402 SKNRLVKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGL 481 (728)
T ss_pred hHHHHHHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHH
Confidence 33445777888888877665433222222223445566666666677899999999998542 222 111111122
Q ss_pred ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh---HhHHHHHHcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhc
Q psy12605 368 LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS---AQTQEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 368 ~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
.+..+++.-.... .++..|+..+..+|+|+..--. +.....+..|.+..+.. ..-...-.|+=+++.+++|+-.
T Consensus 482 ll~~~~~~A~~~~--Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk 559 (728)
T KOG4535|consen 482 LLLKMLRSAIEAS--ADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFK 559 (728)
T ss_pred HHHHHHHHHHHhh--hhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhc
Confidence 3344443332211 1578899999999999764110 11111111122222211 1223456789999999999987
Q ss_pred CChH-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 444 DGPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 444 ~~~~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
+..- ..+.=...-+++.|..++.+..+-+++-+++.+|..-.
T Consensus 560 n~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~ 602 (728)
T KOG4535|consen 560 NPALPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG 602 (728)
T ss_pred CccccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence 6432 22222334467888888888777777777777776544
|
|
| >PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region | Back alignment and domain information |
|---|
Probab=95.95 E-value=0.023 Score=48.17 Aligned_cols=61 Identities=16% Similarity=0.281 Sum_probs=46.2
Q ss_pred CCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHH
Q psy12605 704 FPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLK 767 (845)
Q Consensus 704 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~ 767 (845)
+.+.|+.||..||.+|.|++.....+....+ ..++..|++++.+.|+.|+..| ..|.++++
T Consensus 36 ~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f--~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~llk 96 (97)
T PF12755_consen 36 FDDQDSRVRYYACEALYNISKVARGEILPYF--NEIFDALCKLSADPDENVRSAA-ELLDRLLK 96 (97)
T ss_pred cCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHcCCchhHHHHH-HHHHHHhc
Confidence 3889999999999999999844433333322 3588889999999999987665 77777764
|
|
| >KOG1248|consensus | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.66 Score=55.41 Aligned_cols=234 Identities=14% Similarity=0.137 Sum_probs=135.2
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH--cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh-hhHHH
Q psy12605 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA--AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-QLRDY 168 (845)
Q Consensus 92 ~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~--~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~-~~r~~ 168 (845)
.+.....++.++.+|..+..+|..++.. +.......+ ......|.+-+++.....+...+.+|-.|-...+ +..+.
T Consensus 657 ~v~~~~e~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~ 735 (1176)
T KOG1248|consen 657 TVDPEFENSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDL 735 (1176)
T ss_pred HhhHHhhccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHH
Confidence 3444554556789999999999999876 222222221 1244455555566666677777777776654443 44444
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc--CC---CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhh
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR--NK---DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEK 243 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~--~~---~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~ 243 (845)
+.. .|+-++-.++ +.+...++++..+|..++. .. ...+........++.+...+-.+...
T Consensus 736 i~k--~I~EvIL~~K-e~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~------------ 800 (1176)
T KOG1248|consen 736 IPK--LIPEVILSLK-EVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTR------------ 800 (1176)
T ss_pred HHH--HHHHHHHhcc-cccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHH------------
Confidence 433 2444444444 4477899999999999882 11 11111233444555554443333222
Q ss_pred ChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhc
Q psy12605 244 NPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN 323 (845)
Q Consensus 244 ~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~ 323 (845)
+....+-++..+.....+...--.-.+++..+..+|.++++.++.+|++.+.-++..-+...-.-..
T Consensus 801 -------------~~as~Ivai~~il~e~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~ 867 (1176)
T KOG1248|consen 801 -------------VVASDIVAITHILQEFKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHL 867 (1176)
T ss_pred -------------HHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhH
Confidence 2222233333333221111111112355667777889999999999999999998775553322222
Q ss_pred CCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 324 CDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 324 ~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
...++.+..+.++....+|..+-..|-.+..
T Consensus 868 ~~LL~sll~ls~d~k~~~r~Kvr~LlekLir 898 (1176)
T KOG1248|consen 868 EELLPSLLALSHDHKIKVRKKVRLLLEKLIR 898 (1176)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 2367778887777777788777766666643
|
|
| >KOG1020|consensus | Back alignment and domain information |
|---|
Probab=95.89 E-value=6.8 Score=48.47 Aligned_cols=109 Identities=16% Similarity=0.175 Sum_probs=74.7
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
+++..++..|. ++...+|..|+.||..+...++..... ...-..+-.-+.++...||++|+..+|......++.-.
T Consensus 816 ~yLk~Il~~l~-e~~ialRtkAlKclS~ive~Dp~vL~~---~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~ 891 (1692)
T KOG1020|consen 816 PYLKLILSVLG-ENAIALRTKALKCLSMIVEADPSVLSR---PDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIF 891 (1692)
T ss_pred HHHHHHHHHhc-CchHHHHHHHHHHHHHHHhcChHhhcC---HHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHH
Confidence 46777888884 677899999999999998766543211 11223334455666789999999999977766565544
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
..++ .+.+-+.. +...+|..++.++..+|...+
T Consensus 892 qyY~-----~i~erIlD-tgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 892 QYYD-----QIIERILD-TGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred HHHH-----HHHhhcCC-CchhHHHHHHHHHHHHHHhCC
Confidence 4443 22222222 256899999999999998663
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.015 Score=50.67 Aligned_cols=71 Identities=18% Similarity=0.252 Sum_probs=61.1
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
++..|+++|..+.++.+..-|+.=|+.++...|+.+..+-+.|+=+.+++++.+++++|+.+|+.++..+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 58999999966667888888999999999988888888878999999999999999999999999998875
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >KOG4151|consensus | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.22 Score=56.82 Aligned_cols=246 Identities=15% Similarity=0.107 Sum_probs=155.0
Q ss_pred HhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHH-hhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHH
Q psy12605 157 NIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN-LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 235 (845)
Q Consensus 157 nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~-l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~ 235 (845)
.++....+-|...++.|+...|+++....++ ..+..+.++|.. +.-.. ......++.+...+.. |..
T Consensus 488 ~~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e-~akl~~~~aL~~~i~f~~------~~~~~v~~~~~s~~~~-d~~---- 555 (748)
T KOG4151|consen 488 YLAAKEKYERAKKIKPGGYEALLRLGQQQFE-EAKLKWYHALAGKIDFPG------ERSYEVVKPLDSALHN-DEK---- 555 (748)
T ss_pred HHhhhhHHhcCccccccHHHHHHHHHHHhch-HHHHHHHHHHhhhcCCCC------Cchhhhhhhhcchhhh-hHH----
Confidence 3333334456667788889999988876644 566677777772 11100 0112233333222221 111
Q ss_pred HHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCCh
Q psy12605 236 LWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD 315 (845)
Q Consensus 236 ~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~ 315 (845)
..-.-.++.++.+|+..+....+.+.+.-.++.+-.++...++..+.++++++.||..++.
T Consensus 556 -------------------~~en~E~L~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~ 616 (748)
T KOG4151|consen 556 -------------------GLENFEALEALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPL 616 (748)
T ss_pred -------------------HHHHHHHHHHhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHH
Confidence 0022356778888888877766777777777777777888899999999999999998865
Q ss_pred hhHHHHhcC-CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH-HhcCChHHHHHHhhhcccccCChhHHHHHH
Q psy12605 316 EQTQVILNC-DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV-IDAGLLPKIIANLQKVGRIVLRPNLQFEAA 393 (845)
Q Consensus 316 ~~~~~i~~~-~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l-~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~ 393 (845)
-....+.+. ..++.....+...++....+++.++..++......+..+ --......++..+.+. ++.+|....
T Consensus 617 ~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-----~~~~qhrgl 691 (748)
T KOG4151|consen 617 LYERSIVEYKDRLKLWNLNLEVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-----DDEIQHRGL 691 (748)
T ss_pred HHHHHhhccccCchHHHHHHHhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-----hhhhhhhhh
Confidence 555556663 455655555666677777777777776666655555532 2245666777777764 788999888
Q ss_pred HHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHH
Q psy12605 394 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438 (845)
Q Consensus 394 ~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 438 (845)
....|+.....+....+......+.+..+-.......++.+..+|
T Consensus 692 ~~~ln~~~~~~ei~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~l 736 (748)
T KOG4151|consen 692 VIILNLFEALFEIAEKIFETEVMELLSGLQKLNRAPKREDAAPCL 736 (748)
T ss_pred hhhhhHHHHHHHHHHHhccchHHHHHHHHHHhhhhhhhhhhhhHH
Confidence 888887776666666666666655554443333334444444443
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.7 Score=46.59 Aligned_cols=101 Identities=14% Similarity=0.058 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc
Q psy12605 105 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK 183 (845)
Q Consensus 105 i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~ 183 (845)
....|+.+|.-++--++..+..+-+...+..|+.+|+ +..+.++..++.+|-.+-.+++.+.+.+-+.+|+..++.+++
T Consensus 107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk 186 (257)
T PF08045_consen 107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK 186 (257)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence 4566888999999877888888889999999999994 457899999999999999999999998889999999999997
Q ss_pred CCC-CHHHHHHHHHHHHHhhcCC
Q psy12605 184 PDI-PISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 184 ~~~-~~~~~~~a~~~L~~l~~~~ 205 (845)
... +.+++-.++..|.-.....
T Consensus 187 ~~~~~~~~r~K~~EFL~fyl~~E 209 (257)
T PF08045_consen 187 SKSTDRELRLKCIEFLYFYLMPE 209 (257)
T ss_pred cccccHHHhHHHHHHHHHHHccc
Confidence 543 5677777777776655544
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >KOG3036|consensus | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.34 Score=47.39 Aligned_cols=150 Identities=15% Similarity=0.086 Sum_probs=106.4
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChH
Q psy12605 339 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVP 417 (845)
Q Consensus 339 ~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~ 417 (845)
...|..-+.+|..+.++.++.+..+.++.+---+..+|.....+....-+|..+.+.++.+.. ++.+..+.+...+.+|
T Consensus 92 qsnRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVP 171 (293)
T KOG3036|consen 92 QSNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVP 171 (293)
T ss_pred ccchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHH
Confidence 344444444444555666777788888887777788887665444567789999999999997 4556778888999999
Q ss_pred HHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC-------CChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 418 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM-------GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 418 ~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-------g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
..++.++.+++.-+..|...+..|..+.....-..... ..+..++..+.+..+..+.++++.+..+|+.++
T Consensus 172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp 249 (293)
T KOG3036|consen 172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP 249 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence 99999999999999999999999988764433222211 133444444455566677777777777777544
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.69 Score=48.83 Aligned_cols=183 Identities=17% Similarity=0.180 Sum_probs=109.2
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHH--hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC--
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI--HSGILPVLVECLERSDRPNLQFEAAWALTNIASG-- 119 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-- 119 (845)
..+.+.+ ..+.....+.|..++..+.+++.... ..+.+. ..-+++.+.+.++... .+-+..|+.++.-++-.
T Consensus 43 ~~L~~~I-d~l~eK~~~~Re~aL~~l~~~l~~~~--~~d~v~~~~~tL~~~~~k~lkkg~-~~E~~lA~~~l~Ll~ltlg 118 (309)
T PF05004_consen 43 DKLKEAI-DLLTEKSSSTREAALEALIRALSSRY--LPDFVEDRRETLLDALLKSLKKGK-SEEQALAARALALLALTLG 118 (309)
T ss_pred HHHHHHH-HHHHhcCHHHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHhccCC-HHHHHHHHHHHHHHhhhcC
Confidence 3466777 78888889999999999999987652 223222 2346888888886544 36677787777776643
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCC--hhHHHHHHHHHHHhcC---CChhhHHHHHhcCChhhHH--hhhc---------
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPH--SNVCEQAVWALGNIIG---DGPQLRDYVINMGVVPPLL--SFIK--------- 183 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~--~~v~~~a~~~L~nla~---~~~~~r~~i~~~g~i~~Lv--~ll~--------- 183 (845)
..+....+++ ...|.|.+.+.++. ..+|..|+.+|+-++. .+++-.....+ .+..+. ...+
T Consensus 119 ~g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~--~le~if~~~~~~~~~~~~~~~ 195 (309)
T PF05004_consen 119 AGEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME--SLESIFLLSILKSDGNAPVVA 195 (309)
T ss_pred CCccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH--HHHHHHHHHhcCcCCCccccc
Confidence 3344555555 58889999888764 4566677777776643 33222221111 122111 1111
Q ss_pred CCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhh
Q psy12605 184 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVS 233 (845)
Q Consensus 184 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~ 233 (845)
......+...|+.+-+-|...-+...-.......+|.|..+|.+.|.+++
T Consensus 196 ~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VR 245 (309)
T PF05004_consen 196 AEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVR 245 (309)
T ss_pred CCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHH
Confidence 11123566666544444443332211123456789999999999999933
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >KOG1967|consensus | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.077 Score=61.07 Aligned_cols=188 Identities=20% Similarity=0.191 Sum_probs=121.2
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH--------HHHh----cCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD--------YVIN----MGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~--------~i~~----~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
+...|+.+|+. +++-..+..++.-+..|++..+. .+++ ..++|.+++..... +...+.+-..+|+
T Consensus 816 ia~klld~Ls~--~~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~-~~~~K~~yl~~Ls 892 (1030)
T KOG1967|consen 816 IAEKLLDLLSG--PSTGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETA-PGSQKHNYLEALS 892 (1030)
T ss_pred HHHHHHHhcCC--ccccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccC-CccchhHHHHHHH
Confidence 34556666665 34556667777777766654321 1222 24688888877732 4467777888888
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
+...+.+...-.......+|.|.+.+.-+|.. ++..+..++..+..........-
T Consensus 893 hVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~-------------------------v~vstl~~i~~~l~~~~tL~t~~ 947 (1030)
T KOG1967|consen 893 HVLTNVPKQVLLPQFPMLLPLLLQALSMPDVI-------------------------VRVSTLRTIPMLLTESETLQTEH 947 (1030)
T ss_pred HHHhcCCHHhhccchhhHHHHHHHhcCCCccc-------------------------hhhhHhhhhhHHHHhccccchHH
Confidence 88876644334445667889999999999998 66667776665443333222221
Q ss_pred HhcCchhhHHhhccCCc---hhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHH
Q psy12605 280 IDSGVVPSLIPLLSHKE---VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWF 348 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~---~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 348 (845)
-..++|.+..+=.+++ ..+|..|+.+|..+..--+...-......++..|...|+++..-+|++|..+
T Consensus 948 -~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 948 -LSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred -HhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 1234555555544443 6799999999999987434332223334578889999999999999988654
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.71 Score=50.03 Aligned_cols=287 Identities=17% Similarity=0.145 Sum_probs=147.0
Q ss_pred ChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 132 AVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
-+.+++.-+.+ ....+|..++--|+.-+. ++++|..+...|.+..+++.+....+..+...++.++..+.........
T Consensus 22 ev~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~ 100 (361)
T PF07814_consen 22 EVEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMH 100 (361)
T ss_pred HHHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchh
Confidence 35566666663 355788888888888885 5789999999999999999996554443444444444444433323333
Q ss_pred hhHHhhHHHHHHhhcccC---CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhh
Q psy12605 211 MSTIIELLPALNILIHHH---DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPS 287 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~ 287 (845)
..........+.+++.-+ +...... ......++ ++.+.....+ +.....+....
T Consensus 101 l~~~~~~~~ll~~Ll~~~~~~~~~~~~~-----~~~~~~ls-------k~~~~~~~~~-----------~~~~~~~~~~~ 157 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLKVDKSLDVPSDSD-----SSRKKNLS-------KVQQKSRSLC-----------KELLSSGSSWK 157 (361)
T ss_pred hhhchhHHHHHHHHhccccccccccchh-----hhhhhhhh-------HHHHHHHHHH-----------HHHHhcccccc
Confidence 333455666666776611 1110000 00000000 0111110000 00000000000
Q ss_pred HHhhccCCchhhHHHHHHHHHHHh--------------cCChhhHHHHhcCCccchhhHhhcC----C-------ch---
Q psy12605 288 LIPLLSHKEVKVQTASLRAVGNIV--------------TGTDEQTQVILNCDALSHFPALLTH----P-------KE--- 339 (845)
Q Consensus 288 Lv~lL~~~~~~v~~~al~~L~nl~--------------~~~~~~~~~i~~~~~l~~L~~lL~~----~-------~~--- 339 (845)
--..+..+-+..|+.++-.++ ...+.+++.+.+.|++..+++.+.. . ++
T Consensus 158 ---~~~~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~ 234 (361)
T PF07814_consen 158 ---SPKPPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQ 234 (361)
T ss_pred ---ccCCcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchH
Confidence 000122334445555555552 1123456677778899999998851 1 11
Q ss_pred --hhHHHHHHHHHHhhcCChHHHHHHHh--cCChHHHHHHh-hhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcC
Q psy12605 340 --KICKEAVWFLSNITAGNQAQVQAVID--AGLLPKIIANL-QKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG 414 (845)
Q Consensus 340 --~~~~~a~~~L~nl~~~~~~~~~~l~~--~~~i~~Lv~lL-~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g 414 (845)
..-..++.+|-+.+..+.+....++. .+.++.+...+ ....+ ..+.....++..+.|++.++++.+..+...+
T Consensus 235 ~l~~l~~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~--~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~ 312 (361)
T PF07814_consen 235 SLIDLERCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDD--QVIQLLLLALRLLLNLTNNNPSACEEFASPK 312 (361)
T ss_pred HHHHHHHHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHH--HHHHHHHHHHHHeeeCCCCCccchHhhhhhH
Confidence 12345667777777666665555543 33333333332 22100 1344567889999999988877776666554
Q ss_pred ChHHHHHhhC------C--------CCHHHHHHHHHHHHHhhcCChH
Q psy12605 415 AVPLFLRLLM------S--------PHSNVCEQAVWALGNIIGDGPQ 447 (845)
Q Consensus 415 ~i~~Lv~lL~------~--------~~~~v~~~a~~~L~nl~~~~~~ 447 (845)
....+..+.. + ..-+...-++.++-|++..++.
T Consensus 313 l~~~~~~i~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~ 359 (361)
T PF07814_consen 313 LGQQLGLIVTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSEA 359 (361)
T ss_pred hccchHHHHHhhcccccccccccccccchHHHHHHHhHHHheeeCcc
Confidence 3333221111 1 1225566677777777766543
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=95.61 E-value=0.19 Score=46.34 Aligned_cols=124 Identities=11% Similarity=0.121 Sum_probs=97.4
Q ss_pred hHHHHhcCCccchhhHhhcCCc------hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHH
Q psy12605 317 QTQVILNCDALSHFPALLTHPK------EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF 390 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL~~~~------~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~ 390 (845)
+...+++.+|+..|++++.++. .+....++.++.++..+..-.. ...+..++.+++.++.... .+..+..
T Consensus 3 FA~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsW-d~l~~~FI~Kia~~Vn~~~---~d~~i~q 78 (160)
T PF11841_consen 3 FAQEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSW-DTLSDSFIKKIASYVNSSA---MDASILQ 78 (160)
T ss_pred hHHHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCch-hhccHHHHHHHHHHHcccc---ccchHHH
Confidence 3467888899999999997654 3566677788888766643333 2445667888888888653 3788999
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 391 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 391 ~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
.+...|-+++.+++.....+.+.=-++.|+..|+.++++++..++..+-.+-..
T Consensus 79 ~sLaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~k 132 (160)
T PF11841_consen 79 RSLAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLK 132 (160)
T ss_pred HHHHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhc
Confidence 999999999998887777777777899999999999999999998887776543
|
|
| >KOG1967|consensus | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.095 Score=60.36 Aligned_cols=218 Identities=17% Similarity=0.146 Sum_probs=129.6
Q ss_pred ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC------------Ch
Q psy12605 144 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP------------SM 211 (845)
Q Consensus 144 ~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~------------~~ 211 (845)
+.+.++.|+..|..+... --.|..-....+...++++|+.+ ++-..++.++.-+..+.++.. +.
T Consensus 787 s~dls~~al~~l~Wv~Ka-Ll~R~~~~s~~ia~klld~Ls~~---~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQ 862 (1030)
T KOG1967|consen 787 SLDLSEIALTVLAWVTKA-LLLRNHPESSEIAEKLLDLLSGP---STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQ 862 (1030)
T ss_pred CcchhhHHHHHHHHHHHH-HHHcCCcccchHHHHHHHhcCCc---cccchHHHhhHhhhccChHHhhhccccchhHHHHH
Confidence 455666666666555311 00000000111234456666553 233445555555444432211 11
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh--cCchhhHH
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID--SGVVPSLI 289 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv 289 (845)
......+|.|++.+...+.. .+..-..+|+++-.+-+. +.+.. ..++|.|+
T Consensus 863 RfF~~ivP~l~~~~~t~~~~-------------------------~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLL 915 (1030)
T KOG1967|consen 863 RFFCDIVPILVSKFETAPGS-------------------------QKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLL 915 (1030)
T ss_pred HHHHhhHHHHHHHhccCCcc-------------------------chhHHHHHHHHHHhcCCH--HhhccchhhHHHHHH
Confidence 23456788888888755554 666677777776654443 22211 25678888
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc---hhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK---EKICKEAVWFLSNITAGNQAQVQAVIDA 366 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~---~~~~~~a~~~L~nl~~~~~~~~~~l~~~ 366 (845)
+.|+-++..++..+++++.-+....+.....=.+ -.+|.++.+=.+.+ ..+|..|+.+|..+....|...-.....
T Consensus 916 q~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~ 994 (1030)
T KOG1967|consen 916 QALSMPDVIVRVSTLRTIPMLLTESETLQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRP 994 (1030)
T ss_pred HhcCCCccchhhhHhhhhhHHHHhccccchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccH
Confidence 9999999999999999999987665543322222 35666666666554 6789999999999977555443333456
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
.++..|+..|.+. ..-+|.+|..+=.+
T Consensus 995 ~Vl~al~k~LdDk-----KRlVR~eAv~tR~~ 1021 (1030)
T KOG1967|consen 995 LVLRALIKILDDK-----KRLVRKEAVDTRQN 1021 (1030)
T ss_pred HHHHHhhhccCcH-----HHHHHHHHHHHhhh
Confidence 6778888888764 45778888765444
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=95.40 E-value=1.2 Score=44.53 Aligned_cols=190 Identities=11% Similarity=0.105 Sum_probs=121.4
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhhc-------cCCc-----hhhHHHHHHHHHHHhcCChhhHHHHhc
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPLL-------SHKE-----VKVQTASLRAVGNIVTGTDEQTQVILN 323 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL-------~~~~-----~~v~~~al~~L~nl~~~~~~~~~~i~~ 323 (845)
.++.|+.-|+.--+..++..-.+... |.+..|++=+ ..++ ..-...|+..+..++++ ++.+..+++
T Consensus 11 ~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAsh-petr~~Fl~ 89 (262)
T PF04078_consen 11 TRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASH-PETRMPFLK 89 (262)
T ss_dssp HHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH--TTTHHHHHH
T ss_pred hHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcC-hHHHHHHHH
Confidence 66777777766555555555555554 5554443322 2221 23345777788888775 666888999
Q ss_pred CCccchhhHhhcCC-----chhhHHHHHHHHHHhhcC-ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHH
Q psy12605 324 CDALSHFPALLTHP-----KEKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALT 397 (845)
Q Consensus 324 ~~~l~~L~~lL~~~-----~~~~~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~ 397 (845)
+.+.-.|..+|+.. -+.+|-.++++++.+... +++.+..+.+.+++|..++.+..+ +.-.|..|..++.
T Consensus 90 a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~G-----selSKtvAtfIlq 164 (262)
T PF04078_consen 90 AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFG-----SELSKTVATFILQ 164 (262)
T ss_dssp TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS------HHHHHHHHHHHH
T ss_pred cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhc-----cHHHHHHHHHHHH
Confidence 98888888888543 267889999999998764 456777788999999999999885 6788889999999
Q ss_pred HHhcCChHh-------HHHHHHcCChHH-HHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 398 NIASGTSAQ-------TQEVVAAGAVPL-FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 453 (845)
Q Consensus 398 ~l~~~~~~~-------~~~l~~~g~i~~-Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 453 (845)
.+..++... .+...-...+.. +..+...+++.+.+..++|-..++.+. ..|+.+.
T Consensus 165 KIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp-rar~aL~ 227 (262)
T PF04078_consen 165 KILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP-RAREALR 227 (262)
T ss_dssp HHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST-THHHHHH
T ss_pred HHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH-HHHHHHH
Confidence 987654321 111111112222 334456677888888888888887654 4454443
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=95.40 E-value=2.4 Score=50.25 Aligned_cols=239 Identities=16% Similarity=0.201 Sum_probs=129.2
Q ss_pred HHHcCChHHHHHhhCCC-----ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 127 VVAAGAVPLFLRLLMSP-----HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s~-----~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
+.+.|++..+++++.+. ..++....+..|...+.- +.+|+.+.+.|+++.|+..+....
T Consensus 113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l--------------- 176 (802)
T PF13764_consen 113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRAL--------------- 176 (802)
T ss_pred hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHH---------------
Confidence 34468999999999763 345666777777777744 789999999999999997774211
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh---cCChhhHHH
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT---DGGNDQIQM 278 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~---~~~~~~~~~ 278 (845)
............++.+..+-.++...+.+ -....... .... +...+.
T Consensus 177 -~~~~~~~~~~i~E~LL~IiE~ll~ea~~~-------------------------~~~~~~~~-~~~~~~~~~~~~~--- 226 (802)
T PF13764_consen 177 -QANQNSSQAEIAEQLLEIIESLLSEANSS-------------------------SSSESKSS-SSLSGSEEQDKEQ--- 226 (802)
T ss_pred -hCccccccchHHHHHHHHHHHHHHHHhhh-------------------------hhhhcccc-ccccccccccHHH---
Confidence 00000111122333443333333221111 00000000 0000 112222
Q ss_pred HHhcCchhhHHhhc----cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh--c---CCchhhHHHHHHHH
Q psy12605 279 VIDSGVVPSLIPLL----SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL--T---HPKEKICKEAVWFL 349 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL----~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL--~---~~~~~~~~~a~~~L 349 (845)
+..+++.+ ...++.+....++.|.+++.++++..+.+++. + ...+++= + .++.... +.++
T Consensus 227 ------v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~~-F-~p~l~f~~~D~~~~~~~~~~---Le~F 295 (802)
T PF13764_consen 227 ------VEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVEH-F-KPYLDFDKFDEEHSPDEQFK---LECF 295 (802)
T ss_pred ------HHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHHH-H-HHhcChhhcccccCchHHHH---HHHH
Confidence 23333333 33468899999999999999988877766643 1 2222211 1 1122222 3444
Q ss_pred HHhhcC------ChHHHHHHHhcCChHHHHHHhhhccccc---CChhHHH--------HHHHHHHHHhcCChHhHHHHHH
Q psy12605 350 SNITAG------NQAQVQAVIDAGLLPKIIANLQKVGRIV---LRPNLQF--------EAAWALTNIASGTSAQTQEVVA 412 (845)
Q Consensus 350 ~nl~~~------~~~~~~~l~~~~~i~~Lv~lL~~~~~~~---~~~~v~~--------~a~~~L~~l~~~~~~~~~~l~~ 412 (845)
+.++.+ ....++.+++.|++...+++|..+.+.. .+++.+. .+...|.-++.++...... +.
T Consensus 296 ~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~ 374 (802)
T PF13764_consen 296 CEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPSLPYILRLLRGLARGHEPTQLL-IA 374 (802)
T ss_pred HHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HH
Confidence 444332 1456677899999999999998764431 2333333 3566666677766544433 55
Q ss_pred cCChHHHHHhhC
Q psy12605 413 AGAVPLFLRLLM 424 (845)
Q Consensus 413 ~g~i~~Lv~lL~ 424 (845)
.+++ .+++.|+
T Consensus 375 ~~~l-~~lH~LE 385 (802)
T PF13764_consen 375 EQLL-PLLHRLE 385 (802)
T ss_pred hhHH-HHHHHhh
Confidence 5666 4444444
|
|
| >PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.067 Score=46.62 Aligned_cols=71 Identities=21% Similarity=0.354 Sum_probs=58.6
Q ss_pred CCchHHhhhhc-cccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhc
Q psy12605 738 GVIPPFCDLLS-CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYF 812 (845)
Q Consensus 738 ~~i~~L~~~L~-~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~ 812 (845)
.++..|+++|. +.|+.++..|+.-|..+++..+.+ ...+.+.|+-+.+..|++|+|++|+..|...++++.
T Consensus 43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~g----r~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNG----RNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGG----HHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhH----HHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 36777888884 468888888888899999987765 577899999999999999999999999999988765
|
ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.64 Score=44.80 Aligned_cols=93 Identities=14% Similarity=0.175 Sum_probs=71.8
Q ss_pred ChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCC-hhhHHh
Q psy12605 102 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGV-VPPLLS 180 (845)
Q Consensus 102 ~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~-i~~Lv~ 180 (845)
+|.+|..++.+++.++...+...+ ..+|.+...|.++++.+|.+|+.+|..|...+. +.-.|- +..++.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~-----ik~k~~l~~~~l~ 70 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDM-----IKVKGQLFSRILK 70 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc-----eeehhhhhHHHHH
Confidence 478999999999999976544333 368999999999999999999999999975532 111132 366667
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 181 FIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 181 ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
++..+ +.+++..|..++..+....
T Consensus 71 ~l~D~-~~~Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 71 LLVDE-NPEIRSLARSFFSELLKKR 94 (178)
T ss_pred HHcCC-CHHHHHHHHHHHHHHHHhc
Confidence 77555 5689999999999998864
|
|
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.88 Score=53.52 Aligned_cols=178 Identities=15% Similarity=0.138 Sum_probs=105.1
Q ss_pred HHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhH-HHHHHHhhcCCCh-h
Q psy12605 437 ALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL-LPALNILIHHHDT-S 514 (845)
Q Consensus 437 ~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~-l~~l~~ll~~~d~-~ 514 (845)
+|+++....+.....+.+.|++..+...++.....++.+.+...+.|++...+..+.......+ ...+..++...+. +
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e 573 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE 573 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence 7889999999999999999999999999998888899999999999999765322221111111 1233344444444 4
Q ss_pred HHHHHH--HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhh
Q psy12605 515 VSIYLW--LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592 (845)
Q Consensus 515 v~~~~~--l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll 592 (845)
..-.++ +..+..+.+..........+...+.+....- ...........-+.+-+..++
T Consensus 574 rsY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~--------------------~~~~~~~~~~~~f~~~~~~il 633 (699)
T KOG3665|consen 574 RSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRW--------------------LTSEIRVINDRSFFPRILRIL 633 (699)
T ss_pred HHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhcc--------------------CccceeehhhhhcchhHHHHh
Confidence 332233 3322221111111111112222222222111 111111111112222144444
Q ss_pred c-CCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHh
Q psy12605 593 T-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 634 (845)
Q Consensus 593 ~-~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll 634 (845)
. +..+..+..|.|++.+++..++++.+.+.+.|+++.+.++-
T Consensus 634 ~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~ 676 (699)
T KOG3665|consen 634 RLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIR 676 (699)
T ss_pred cccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcc
Confidence 4 45678899999999999999888888899999998887654
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=95.01 E-value=1.7 Score=47.21 Aligned_cols=108 Identities=9% Similarity=0.178 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc-C---CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhH
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS-H---KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPA 332 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~---~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~ 332 (845)
+...|+..+......++.....+.+.|+++.++..+. . ++.++....-.+|+.+|-++. ..+.+.+.+.++.+.+
T Consensus 125 v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~-Gl~~~~~~~~l~~~f~ 203 (379)
T PF06025_consen 125 VFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNR-GLEKVKSSNPLDKLFE 203 (379)
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHH-HHHHHHhcChHHHHHH
Confidence 7778888888888888888899999999999999887 3 456677777889999988744 4567788899999999
Q ss_pred hhcCCch-------hhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 333 LLTHPKE-------KICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 333 lL~~~~~-------~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
++.+++- +.-...-..+-.|.+|.+..+..+++
T Consensus 204 if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~ 243 (379)
T PF06025_consen 204 IFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID 243 (379)
T ss_pred HhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence 9876431 22222334555677888877666554
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1 | Back alignment and domain information |
|---|
Probab=94.94 E-value=1.2 Score=42.98 Aligned_cols=93 Identities=19% Similarity=0.290 Sum_probs=71.9
Q ss_pred ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH
Q psy12605 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137 (845)
Q Consensus 58 ~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~ 137 (845)
+|.++..++..+..++..-++ .++ ..+|.+...| .++++.+|..|+.+|..|...+.-..+ ...+..++
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~-~ve-----~~~~~l~~~L-~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l 69 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN-LVE-----PYLPNLYKCL-RDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRIL 69 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH-HHH-----hHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHH
Confidence 577888999999988775533 222 3588999999 578899999999999999864321111 12347888
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCC
Q psy12605 138 RLLMSPHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 138 ~lL~s~~~~v~~~a~~~L~nla~~ 161 (845)
.++.+++++++..|..++..+...
T Consensus 70 ~~l~D~~~~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 70 KLLVDENPEIRSLARSFFSELLKK 93 (178)
T ss_pred HHHcCCCHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999865
|
|
| >KOG2956|consensus | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.75 Score=49.38 Aligned_cols=183 Identities=13% Similarity=0.108 Sum_probs=115.6
Q ss_pred HHHHHHHcCC-ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 48 MLVVEAARKD-NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 48 ~lv~~~l~~~-~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
+++ ..+.+. ..+.+..|+..|..++..+.-..+++.. ..++..+++.|..+.+..++..|+++|..++... ...
T Consensus 290 ~~l-~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f-~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q---~~~ 364 (516)
T KOG2956|consen 290 DLL-KEISGSERASERKEALSELPKMLCEGSFSVWEQHF-AEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ---PAR 364 (516)
T ss_pred HHH-HhccCccchhHHHHHHHHHHHHHHccchhHHHHHH-HHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc---hHh
Confidence 444 344444 4567778888899988866443343322 2357788999965577889999999999999653 333
Q ss_pred HHH--cCChHHHHHhhCCCChhHH-HHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 127 VVA--AGAVPLFLRLLMSPHSNVC-EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 127 i~~--~g~i~~L~~lL~s~~~~v~-~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
+++ .-+|..++..-.++.+++. .++=.|+.-++...|..+ |..+..++... +...-..++..+..+++
T Consensus 365 l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~-D~~~~~~~iKm~Tkl~e 435 (516)
T KOG2956|consen 365 LFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQC--------IVNISPLILTA-DEPRAVAVIKMLTKLFE 435 (516)
T ss_pred hhchHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcC-cchHHHHHHHHHHHHHh
Confidence 443 2356666666566555544 444446666776666432 22222222222 33455566777888887
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~ 269 (845)
.-....-......+.|.+++...+.+.. ++..|..||.++-
T Consensus 436 ~l~~EeL~~ll~diaP~~iqay~S~SS~-------------------------VRKtaVfCLVamv 476 (516)
T KOG2956|consen 436 RLSAEELLNLLPDIAPCVIQAYDSTSST-------------------------VRKTAVFCLVAMV 476 (516)
T ss_pred hcCHHHHHHhhhhhhhHHHHHhcCchHH-------------------------hhhhHHHhHHHHH
Confidence 6643333445567888888888887777 8888999988764
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.09 Score=51.28 Aligned_cols=112 Identities=15% Similarity=0.190 Sum_probs=81.1
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC--------CChhHHHHHHHHHHH
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS--------DRPNLQFEAAWALTN 115 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~--------~~~~i~~~a~~~L~~ 115 (845)
.+.+.++ ..+.+..... ..+..|+..+..++-.-++.+++.|++..|+.+|..- .+...+..++.||..
T Consensus 66 ~~p~~~i-~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka 142 (187)
T PF06371_consen 66 SSPEWYI-KKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA 142 (187)
T ss_dssp HHHHHHH-HHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHH-HHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence 3455667 7776665442 5677777777765434467888999999999988432 234688899999999
Q ss_pred HhcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 116 IASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 116 la~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
+... ......++. .+++..|+..|.+++..++..++..|..+|
T Consensus 143 l~n~-~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc 186 (187)
T PF06371_consen 143 LMNT-KYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC 186 (187)
T ss_dssp HTSS-HHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred HHcc-HHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 9854 556666666 789999999999999999999999999886
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG3036|consensus | Back alignment and domain information |
|---|
Probab=94.76 E-value=4.7 Score=39.77 Aligned_cols=148 Identities=10% Similarity=0.136 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-----CchhhHHHHHHHHHHhhcCCh-HHHHHHHhcCChHHH
Q psy12605 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-----PKEKICKEAVWFLSNITAGNQ-AQVQAVIDAGLLPKI 372 (845)
Q Consensus 299 v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~L 372 (845)
=...|+..+..++++ ++.+..+.++.+--.+-.+|.. +.+-+|-.++++++.+...++ +....+...+++|.+
T Consensus 95 RVcnaL~LlQcvASH-pdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC 173 (293)
T KOG3036|consen 95 RVCNALALLQCVASH-PDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC 173 (293)
T ss_pred hHHHHHHHHHHHhcC-cchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence 455777777777766 5557777777655555556532 457899999999999877654 466677889999999
Q ss_pred HHHhhhcccccCChhHHHHHHHHHHHHhcCChHh---H-----HHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 373 IANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---T-----QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 373 v~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~---~-----~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
++.+..+ +...|..|..++..|..++... + -..+..-.-..+.++.+.++..+...++.+.-+++.
T Consensus 174 Lrime~G-----SelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd- 247 (293)
T KOG3036|consen 174 LRIMESG-----SELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD- 247 (293)
T ss_pred HHHHhcc-----cHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-
Confidence 9999986 6788899999999988765421 1 111111122334566667788888899998888874
Q ss_pred ChHHHHHHH
Q psy12605 445 GPQLRDYVI 453 (845)
Q Consensus 445 ~~~~~~~l~ 453 (845)
++..|.++.
T Consensus 248 nprar~aL~ 256 (293)
T KOG3036|consen 248 NPRARAALR 256 (293)
T ss_pred CHHHHHHHH
Confidence 455555543
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.044 Score=35.38 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=25.4
Q ss_pred hHHHHHhhCCCChhHHHHHHHHHHHhcC
Q psy12605 133 VPLFLRLLMSPHSNVCEQAVWALGNIIG 160 (845)
Q Consensus 133 i~~L~~lL~s~~~~v~~~a~~~L~nla~ 160 (845)
+|.++++++++++++|..|+++|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999974
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=94.50 E-value=6.2 Score=44.54 Aligned_cols=288 Identities=15% Similarity=0.193 Sum_probs=147.5
Q ss_pred hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH
Q psy12605 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 138 (845)
Q Consensus 59 ~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~ 138 (845)
...+..|+..+++.+..-+-..+..+ ...--.++.....++.|..+...|..+..+......... ..+.+
T Consensus 4 l~~R~~a~~~l~~~i~~~~~~~i~~i-----W~~~~DLi~~~~p~e~R~~~~~ll~~~i~~~~~~~~~~R-----~~fF~ 73 (464)
T PF11864_consen 4 LSERIKAAEELCESIQKYPLSSIEEI-----WYAAKDLIDPNQPSEARRAALELLIACIKRQDSSSGLMR-----AEFFR 73 (464)
T ss_pred HHHHHHHHHHHHHHHHhCCchHHHHH-----HHHHhhhcCCCCCHHHHHHHHHHHHHHHHccccccHHHH-----HHHHH
Confidence 35677788888887765432222222 222234554444567899999999888876543211111 11122
Q ss_pred hhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC--------------------------CHHHH
Q psy12605 139 LLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI--------------------------PISFL 191 (845)
Q Consensus 139 lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~--------------------------~~~~~ 191 (845)
.+. .+.++-...-+.+|..|+.++.+.. .++.+..+.|..++.... +....
T Consensus 74 ~I~~~~~~~d~~~~l~aL~~LT~~Grdi~--~~~~~i~~~L~~wl~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l 151 (464)
T PF11864_consen 74 DISDPSNDDDFDLRLEALIALTDNGRDID--FFEYEIGPFLLSWLEPSYQAARSARRKAKKSSSSKSKGLSNLDNEESNL 151 (464)
T ss_pred HHhcCCCchhHHHHHHHHHHHHcCCcCch--hcccchHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccchhhhH
Confidence 223 2334334455666666665655552 245667777776664211 11223
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC
Q psy12605 192 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG 271 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~ 271 (845)
......+.|+.+.+....+.....+.+..++.+........ ....++..+..+..+
T Consensus 152 ~~ll~~l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~------------------------di~~~L~vldaii~y 207 (464)
T PF11864_consen 152 SDLLQFLVNVIKFNFNYLDEDEISSLVDQICTICKSTSSED------------------------DIEACLSVLDAIITY 207 (464)
T ss_pred HHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHH------------------------HHHHHHHHHHHHHHc
Confidence 34445555555555444444445555555555543322220 223333333322221
Q ss_pred ChhhHHHHHhcCchhhHHhhccC--CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC------CchhhHH
Q psy12605 272 GNDQIQMVIDSGVVPSLIPLLSH--KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH------PKEKICK 343 (845)
Q Consensus 272 ~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~------~~~~~~~ 343 (845)
.. +-.+.++.++..|.+ ...+....+.+++.||+...-.. .++..|..+|.+ .+..+.+
T Consensus 208 ~~------iP~~sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~-------~~i~~L~~iL~~~~~~~~~~~~~lR 274 (464)
T PF11864_consen 208 GD------IPSESLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGH-------SAIRTLCDILRSPDPQNKRDINVLR 274 (464)
T ss_pred Cc------CChHHHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHH-------HHHHHHHHHHcccCccccccHHHHh
Confidence 10 011223344444422 23367788999999998643221 244567777722 2355667
Q ss_pred HHHHHHHHhhcCChHHH-HHHHhcC--ChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 344 EAVWFLSNITAGNQAQV-QAVIDAG--LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~~~-~~l~~~~--~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
.|...+..+..+..... ..+--.- +++.+...++.. ++.+-.+....+.++.
T Consensus 275 GAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~-----~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 275 GAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSN-----SPRVDYEILLLINRLL 329 (464)
T ss_pred hHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCC-----CCeehHHHHHHHHHHH
Confidence 88888888765542211 1111122 667777777753 5566666666666665
|
|
| >PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 [] | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.1 Score=47.38 Aligned_cols=190 Identities=18% Similarity=0.179 Sum_probs=109.5
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh--cCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC-CCCh
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN--MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP-PPSM 211 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~--~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~ 211 (845)
..+..+.+.....|+.++..+.++..... ..+.+.+ ...++.+.+.++.+.. +-+..|+.++.-++-.-.+ ....
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~-~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKS-EEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCH-HHHHHHHHHHHHHhhhcCCCccHH
Confidence 34455555667888888888887764432 2223321 1246677777777654 4455666666666655321 2223
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHH---hhcCChhhHHHHHhcCchhhH
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSY---LTDGGNDQIQMVIDSGVVPSL 288 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~---l~~~~~~~~~~~~~~g~i~~L 288 (845)
.......|.|.+.+.+....+. ++..++.+|+- +...+.+.....+ ..++.+
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~-----------------------~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~i 179 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPK-----------------------ARAACLEALAICTFVGGSDEEETEELM--ESLESI 179 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchH-----------------------HHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHH
Confidence 4556788888888876543311 43444444443 3333322222100 111111
Q ss_pred --Hhhc----------cCCchhhHHHHHHHHHHHhcCChhh-HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 289 --IPLL----------SHKEVKVQTASLRAVGNIVTGTDEQ-TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 289 --v~lL----------~~~~~~v~~~al~~L~nl~~~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
.... ..+++.+..+|+.+++-|...-+.. ..... ...++.|..+|.+.+.++|..|..+|+=+
T Consensus 180 f~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~-~~~~~~l~~lL~s~d~~VRiAAGEaiAll 255 (309)
T PF05004_consen 180 FLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLL-EEALPALSELLDSDDVDVRIAAGEAIALL 255 (309)
T ss_pred HHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1111 1224679999999999988655442 12222 24789999999999999999998877755
|
The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis []. |
| >PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms | Back alignment and domain information |
|---|
Probab=94.32 E-value=10 Score=42.97 Aligned_cols=137 Identities=12% Similarity=0.165 Sum_probs=82.8
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+..++ ...+ ++++.+..|...+.++....++ ..+ ..+..++.|+ .+++..||..|...|-.+|.+++++.
T Consensus 24 ~y~~il-~~~k-g~~k~K~Laaq~I~kffk~FP~-l~~-----~Ai~a~~DLc-EDed~~iR~~aik~lp~~ck~~~~~v 94 (556)
T PF05918_consen 24 DYKEIL-DGVK-GSPKEKRLAAQFIPKFFKHFPD-LQE-----EAINAQLDLC-EDEDVQIRKQAIKGLPQLCKDNPEHV 94 (556)
T ss_dssp HHHHHH-HGGG-S-HHHHHHHHHHHHHHHCC-GG-GHH-----HHHHHHHHHH-T-SSHHHHHHHHHHGGGG--T--T-H
T ss_pred HHHHHH-HHcc-CCHHHHHHHHHHHHHHHhhChh-hHH-----HHHHHHHHHH-hcccHHHHHHHHHhHHHHHHhHHHHH
Confidence 355555 4444 4688888899999988776543 222 2488899999 47788999999999999999988888
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc--CCCCHHHHHHHHHHHHHhh
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--PDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~--~~~~~~~~~~a~~~L~~l~ 202 (845)
..++ ..|+++|.+.++.-...+=++|..+-..++. . .+..+..-+. ...+..+|+.++..|..=.
T Consensus 95 ~kva-----DvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k--~------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl 161 (556)
T PF05918_consen 95 SKVA-----DVLVQLLQTDDPVELDAVKNSLMSLLKQDPK--G------TLTGLFSQIESSKSGDEQVRERALKFLREKL 161 (556)
T ss_dssp HHHH-----HHHHHHTT---HHHHHHHHHHHHHHHHH-HH--H------HHHHHHHHHH---HS-HHHHHHHHHHHHHHG
T ss_pred hHHH-----HHHHHHHhcccHHHHHHHHHHHHHHHhcCcH--H------HHHHHHHHHHhcccCchHHHHHHHHHHHHHH
Confidence 7755 5899999998876666666666555533332 1 1223333332 1224568888887776533
Q ss_pred c
Q psy12605 203 R 203 (845)
Q Consensus 203 ~ 203 (845)
.
T Consensus 162 ~ 162 (556)
T PF05918_consen 162 K 162 (556)
T ss_dssp G
T ss_pred h
Confidence 3
|
Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A. |
| >KOG4653|consensus | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.54 Score=54.10 Aligned_cols=192 Identities=14% Similarity=0.177 Sum_probs=131.2
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI 364 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~ 364 (845)
++..+..++++.+.++.+++..|..+.... .....+...+++...++.|.+.|+-+--.|...+..+|.- .
T Consensus 729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y 799 (982)
T KOG4653|consen 729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------Y 799 (982)
T ss_pred HHHHHHHhcCCcccchHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------c
Confidence 455566667888899999999999998643 3345566678999999999999887777777755555332 3
Q ss_pred hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 365 DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
..+++|.+.+...+.... ..++.+.....++.+++..-.+......+ -.+..++..+++++...|..++..+|+++.-
T Consensus 800 ~e~il~dL~e~Y~s~k~k-~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~ 877 (982)
T KOG4653|consen 800 PEDILPDLSEEYLSEKKK-LQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQL 877 (982)
T ss_pred chhhHHHHHHHHHhcccC-CCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence 456788888865543211 12355555667888877655555554444 5667788888888888899999999998852
Q ss_pred ChH-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC
Q psy12605 445 GPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489 (845)
Q Consensus 445 ~~~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~ 489 (845)
... ..+.+ ..++..++.+...+.+.-++|.++-.+..+-++..
T Consensus 878 ~a~~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg 921 (982)
T KOG4653|consen 878 LAFQVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG 921 (982)
T ss_pred HhhhhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc
Confidence 211 11111 12345556666677777888888888888877653
|
|
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.95 Score=48.07 Aligned_cols=225 Identities=14% Similarity=0.127 Sum_probs=130.0
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh-----HHHHHhc--CChhhHHhhhcCCCCHHHHHHHHHH
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL-----RDYVINM--GVVPPLLSFIKPDIPISFLRNVTWV 197 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~-----r~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~ 197 (845)
..+...+.++.|+..|..-+-+.+..+..+..++-...... .+.+... .++..|+..-..+ ++.-.+...
T Consensus 70 ~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~---dial~~g~m 146 (335)
T PF08569_consen 70 QEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENP---DIALNCGDM 146 (335)
T ss_dssp HHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGST---TTHHHHHHH
T ss_pred HHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCc---cccchHHHH
Confidence 34556689999999999888899999999888887654332 2233322 2333333333322 455555555
Q ss_pred HHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHH
Q psy12605 198 IVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQ 277 (845)
Q Consensus 198 L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 277 (845)
|...++... ........+.+-.+.+.+..++-+ +..+|..++..+-........
T Consensus 147 lRec~k~e~-l~~~iL~~~~f~~ff~~~~~~~Fd-------------------------iasdaf~t~~~llt~hk~~~a 200 (335)
T PF08569_consen 147 LRECIKHES-LAKIILYSECFWKFFKYVQLPNFD-------------------------IASDAFSTFKELLTRHKKLVA 200 (335)
T ss_dssp HHHHTTSHH-HHHHHHTSGGGGGHHHHTTSSSHH-------------------------HHHHHHHHHHHHHHSSHHHHH
T ss_pred HHHHHhhHH-HHHHHhCcHHHHHHHHHhcCCccH-------------------------hHHHHHHHHHHHHhccHHHHH
Confidence 666555431 011111122222233333333333 888888888875544444433
Q ss_pred HHHhc---CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh---HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHH
Q psy12605 278 MVIDS---GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ---TQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351 (845)
Q Consensus 278 ~~~~~---g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~---~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~n 351 (845)
.+... ..+.....+|.+++--++..+++.|+.+....... ...+-+..-+..++.+|.+++..++-+|..++--
T Consensus 201 ~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKv 280 (335)
T PF08569_consen 201 EFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKV 280 (335)
T ss_dssp HHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHH
Confidence 33343 45677888889999889999999999998764332 2334445678889999999999999999988887
Q ss_pred hhcCC--hHHHHHHHhcCChHHHHHHhhhc
Q psy12605 352 ITAGN--QAQVQAVIDAGLLPKIIANLQKV 379 (845)
Q Consensus 352 l~~~~--~~~~~~l~~~~~i~~Lv~lL~~~ 379 (845)
.+++. ++.+..++..+ =+.|++++.+-
T Consensus 281 FVANp~K~~~I~~iL~~N-r~kLl~fl~~f 309 (335)
T PF08569_consen 281 FVANPNKPPPIVDILIKN-REKLLRFLKDF 309 (335)
T ss_dssp HHH-SS-BHHHHHHHHHT-HHHHHHHHHTT
T ss_pred HHhCCCCChHHHHHHHHH-HHHHHHHHHhC
Confidence 66642 22223332111 24566666543
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >PF11841 DUF3361: Domain of unknown function (DUF3361) | Back alignment and domain information |
|---|
Probab=93.94 E-value=1.3 Score=40.99 Aligned_cols=120 Identities=11% Similarity=0.130 Sum_probs=90.7
Q ss_pred hhcHHHHHHHHHcCCCh------HHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCC-ChhHHHHHHHHHHH
Q psy12605 43 QVNLDMLVVEAARKDNP------ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD-RPNLQFEAAWALTN 115 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~~------~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~ 115 (845)
..++..++ +++.++.. +..-.++.++..+..++. -.+ .......|.+.+.+.+.+. ++.+...|+..|-+
T Consensus 10 ~~Gl~~L~-~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~-vsW-d~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs 86 (160)
T PF11841_consen 10 RDGLTLLI-KMIEEGTEIQPCKGEILAYALTAFVELMEHGI-VSW-DTLSDSFIKKIASYVNSSAMDASILQRSLAILES 86 (160)
T ss_pred ccCHHHHH-HHHHcCCccCcchHHHHHHHHHHHHHHHhcCc-Cch-hhccHHHHHHHHHHHccccccchHHHHHHHHHHH
Confidence 45677777 78877652 455557888888887652 223 3456667899999996444 67899999999999
Q ss_pred HhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh
Q psy12605 116 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 165 (845)
Q Consensus 116 la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~ 165 (845)
+...++..-..+.+.=-++.|+.+|+.++++++..|+..+-.+-...++.
T Consensus 87 ~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 87 IVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 99876665666666778999999999999999999998887776555444
|
|
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=93.89 E-value=1.7 Score=51.39 Aligned_cols=169 Identities=18% Similarity=0.151 Sum_probs=121.7
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcC
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAG 131 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g 131 (845)
..+.+.+.+.+.+|+..+...+..... .-.-.-.|.+-.++.....+.|-.+...|+.+|..++........... .+
T Consensus 260 t~~~s~~WK~R~Eale~l~~~l~e~~~--~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~-~~ 336 (815)
T KOG1820|consen 260 TEMLSKKWKDRKEALEELVAILEEAKK--EIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYA-KN 336 (815)
T ss_pred HhhhccchHHHHHHHHHHHHHHhcccc--ccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHH-Hh
Confidence 567789999999999999999886540 011113456666777765667778889999999999976554433322 36
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC-CCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD-PPPS 210 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~ 210 (845)
..|.++.-+......+++.++.++-.++...+.. ..++.+..++.+.++ .++..+...+....+..+ ....
T Consensus 337 v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~-------~~~~~I~e~lk~knp-~~k~~~~~~l~r~~~~~~~~~~~ 408 (815)
T KOG1820|consen 337 VFPSLLDRLKEKKSELRDALLKALDAILNSTPLS-------KMSEAILEALKGKNP-QIKGECLLLLDRKLRKLGPKTVE 408 (815)
T ss_pred hcchHHHHhhhccHHHHHHHHHHHHHHHhcccHH-------HHHHHHHHHhcCCCh-hhHHHHHHHHHHHHhhcCCcCcc
Confidence 8999999999999999998888887777533211 246777788888765 667666666666555554 3334
Q ss_pred hhHHhhHHHHHHhhcccCCch
Q psy12605 211 MSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~ 231 (845)
......++|.++.+..+.+.+
T Consensus 409 ~~t~~~l~p~~~~~~~D~~~~ 429 (815)
T KOG1820|consen 409 KETVKTLVPHLIKHINDTDKD 429 (815)
T ss_pred hhhHHHHhHHHhhhccCCcHH
Confidence 456778999999999999998
|
|
| >PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms [] | Back alignment and domain information |
|---|
Probab=93.85 E-value=0.36 Score=48.25 Aligned_cols=143 Identities=13% Similarity=0.128 Sum_probs=96.1
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChHHHHHhh
Q psy12605 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLL 423 (845)
Q Consensus 345 a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~~Lv~lL 423 (845)
|+..+..++. .++.+..++++.+.--|..+|........-..+|..+.+.++.++. ++++....+.+.+.+|..++.+
T Consensus 70 aLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~m 148 (262)
T PF04078_consen 70 ALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIM 148 (262)
T ss_dssp HHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHH
Confidence 3444445544 5777788999998878888887654222235788899999999997 5667888999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhcCChHHHHHHHh-------CCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 424 MSPHSNVCEQAVWALGNIIGDGPQLRDYVIN-------MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 424 ~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~-------~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+.++.--+..|...+..+..+.....-.... ..++..++..+..+.+..+.++++++...|+.++
T Consensus 149 e~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp 220 (262)
T PF04078_consen 149 EFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP 220 (262)
T ss_dssp HHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST
T ss_pred HhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH
Confidence 9999888889999999887765433222111 1234444444445556678888888888887655
|
Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B. |
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=93.66 E-value=1.4 Score=46.47 Aligned_cols=172 Identities=18% Similarity=0.218 Sum_probs=113.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-ChhhH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG-TSAQT 124 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-~~~~~ 124 (845)
+..++...+.+.++.++..|+++|.-.+-.+++ ... ..++.+.+.++ .+++.++..|+.++..+... ..+..
T Consensus 28 l~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~-~a~-----~~l~l~~~~~~-~~~~~v~~~al~~l~Dll~~~g~~~~ 100 (298)
T PF12719_consen 28 LDSLILPAVQSSDPAVRELALKCLGLCCLLDKE-LAK-----EHLPLFLQALQ-KDDEEVKITALKALFDLLLTHGIDIF 100 (298)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChH-HHH-----HHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCchhc
Confidence 456665788999999999999999987665543 222 23788888884 56889999999999998742 22222
Q ss_pred HHHH-------HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHH-hhhcCCC--CHHHHHHH
Q psy12605 125 QEVV-------AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL-SFIKPDI--PISFLRNV 194 (845)
Q Consensus 125 ~~i~-------~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv-~ll~~~~--~~~~~~~a 194 (845)
.... ....+..+.+.+.+.+++++..|+..++.|--.+.-.- ....+..|+ .+.+..+ +..++...
T Consensus 101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L 176 (298)
T PF12719_consen 101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCL 176 (298)
T ss_pred cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHH
Confidence 2111 23567788889999999999999999999864432111 011233333 2223222 34677777
Q ss_pred HHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCC
Q psy12605 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229 (845)
Q Consensus 195 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 229 (845)
...+-..+......+ .......+|++..+....+
T Consensus 177 ~~Ffp~y~~s~~~~Q-~~l~~~f~~~l~~~~~~~~ 210 (298)
T PF12719_consen 177 SVFFPVYASSSPENQ-ERLAEAFLPTLRTLSNAPD 210 (298)
T ss_pred HHHHHHHHcCCHHHH-HHHHHHHHHHHHHHHhCcc
Confidence 777888887663232 3445677788777766543
|
|
| >PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 [] | Back alignment and domain information |
|---|
Probab=93.61 E-value=0.11 Score=33.49 Aligned_cols=28 Identities=36% Similarity=0.582 Sum_probs=25.1
Q ss_pred hHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 416 VPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 416 i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+|.+++++++++++||..|+++|+.++.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999875
|
Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B .... |
| >KOG3665|consensus | Back alignment and domain information |
|---|
Probab=93.43 E-value=8.1 Score=45.68 Aligned_cols=179 Identities=16% Similarity=0.130 Sum_probs=106.0
Q ss_pred HHHHhhcCChhhHHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChh--hHHHHhcCCccchhhHhhcCCc-h
Q psy12605 264 ALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDE--QTQVILNCDALSHFPALLTHPK-E 339 (845)
Q Consensus 264 ~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~--~~~~i~~~~~l~~L~~lL~~~~-~ 339 (845)
++.+++...++..+.+.+.|+...+...++. ...+++..+++.++|++...+. .......... ..+-.++..-+ .
T Consensus 494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~-~~f~~~~~~w~~~ 572 (699)
T KOG3665|consen 494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDF-SVFKVLLNKWDSI 572 (699)
T ss_pred HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHH-HHHHHHHhhcchh
Confidence 5667777778888899999999999999964 5678999999999999854322 1111111111 22333443333 3
Q ss_pred hhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHH-
Q psy12605 340 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPL- 418 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~- 418 (845)
+.-..|+..|+.+..+.++.. ....+..+...+......-+..............
T Consensus 573 ersY~~~siLa~ll~~~~~~~------------------------~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~ 628 (699)
T KOG3665|consen 573 ERSYNAASILALLLSDSEKTT------------------------ECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPR 628 (699)
T ss_pred hHHHHHHHHHHHHHhCCCcCc------------------------cccchHHHHHHHHHHhhccCccceeehhhhhcchh
Confidence 666778888888766543311 1111111111111111111111111111112222
Q ss_pred HHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCC
Q psy12605 419 FLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP 467 (845)
Q Consensus 419 Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~ 467 (845)
+.+++. +..+..+.+|+|++.++....++....+.+.|+++.+...-..
T Consensus 629 ~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (699)
T KOG3665|consen 629 ILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRESNGFELIENIRVL 678 (699)
T ss_pred HHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhccchhhhhhcchh
Confidence 444554 4567789999999999999988888889999998888776543
|
|
| >KOG4653|consensus | Back alignment and domain information |
|---|
Probab=93.36 E-value=1.5 Score=50.56 Aligned_cols=221 Identities=14% Similarity=0.138 Sum_probs=127.3
Q ss_pred HHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcC
Q psy12605 94 VECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 173 (845)
Q Consensus 94 v~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g 173 (845)
+..+ .++.+.+|..++..|+.+... .+....+...+++...+..|++.++-+--.|+..+..+|.- ....
T Consensus 733 i~sl-~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev--------y~e~ 802 (982)
T KOG4653|consen 733 ISSL-HDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV--------YPED 802 (982)
T ss_pred HHHh-cCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh--------cchh
Confidence 3344 355667899999999999864 46777788899999999999999999999999988888843 2334
Q ss_pred ChhhHHhhh-cCCC--CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHh
Q psy12605 174 VVPPLLSFI-KPDI--PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250 (845)
Q Consensus 174 ~i~~Lv~ll-~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (845)
++|.+.+.- +... ..+.+-....++.++.+..++ -.....+..+.++....+++|..
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Ge-l~~~y~~~Li~tfl~gvrepd~~------------------- 862 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGE-LVFKYKAVLINTFLSGVREPDHE------------------- 862 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHhcCCchHH-------------------
Confidence 566666532 2111 123333344555555543321 11223446677777777755554
Q ss_pred hhhhHHHHHHHHHHHHHhhcCChhhHH-HHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcC---C
Q psy12605 251 LVSKMKILVDTVWALSYLTDGGNDQIQ-MVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNC---D 325 (845)
Q Consensus 251 ~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~---~ 325 (845)
-+..++..++.+.....-... .+. .++..++.+. .++++.+|.+|+..+..+..+.+.-.-.+... .
T Consensus 863 ------~RaSS~a~lg~Lcq~~a~~vsd~~~--ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~D 934 (982)
T KOG4653|consen 863 ------FRASSLANLGQLCQLLAFQVSDFFH--EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLID 934 (982)
T ss_pred ------HHHhHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHH
Confidence 444555555554432111000 111 2233444444 35678899999999999876644321111111 1
Q ss_pred ccchhhHhh-cCCchhhHHHHHHHHHHh
Q psy12605 326 ALSHFPALL-THPKEKICKEAVWFLSNI 352 (845)
Q Consensus 326 ~l~~L~~lL-~~~~~~~~~~a~~~L~nl 352 (845)
....+.... .+.++.++..|+.++-.+
T Consensus 935 l~~tl~~~vr~~~dd~~klhaql~leei 962 (982)
T KOG4653|consen 935 LDETLLSYVRQHDDDGLKLHAQLCLEEI 962 (982)
T ss_pred HHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 112222222 334556666666666554
|
|
| >PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D | Back alignment and domain information |
|---|
Probab=93.13 E-value=6.1 Score=42.85 Aligned_cols=92 Identities=17% Similarity=0.222 Sum_probs=62.7
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC-CCh-hHHHHHHHHHHHhcCCChhhHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHS-NVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s-~~~-~v~~~a~~~L~nla~~~~~~r~ 167 (845)
+..++.=|+++....+|+.++--|+.-+. +++.+..+..+|.+..+++.+.. ++. .....++.++.-++.+. ..-.
T Consensus 23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~-~~~~ 100 (361)
T PF07814_consen 23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDG-LNMH 100 (361)
T ss_pred HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCC-cchh
Confidence 56666667545566889999888888876 58999999999999999999944 433 33444455555555444 2334
Q ss_pred HHHhcCChhhHHhhhc
Q psy12605 168 YVINMGVVPPLLSFIK 183 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~ 183 (845)
.+.+.+....++.++.
T Consensus 101 l~~~~~~~~ll~~Ll~ 116 (361)
T PF07814_consen 101 LLLDRDSLRLLLKLLK 116 (361)
T ss_pred hhhchhHHHHHHHHhc
Confidence 4445555666677666
|
melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants. |
| >KOG2956|consensus | Back alignment and domain information |
|---|
Probab=92.55 E-value=4 Score=44.13 Aligned_cols=144 Identities=13% Similarity=0.093 Sum_probs=90.8
Q ss_pred ChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhh
Q psy12605 174 VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVS 253 (845)
Q Consensus 174 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (845)
++..+++.|+...+...+..|...|..+|++.. ..-+...+-++..+...-.+..+.+
T Consensus 330 iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~-~~l~DstE~ai~K~Leaa~ds~~~v--------------------- 387 (516)
T KOG2956|consen 330 ILLLLLEVLSDSEDEIIKKLALRVLREMLTNQP-ARLFDSTEIAICKVLEAAKDSQDEV--------------------- 387 (516)
T ss_pred HHHHHHHHHccchhhHHHHHHHHHHHHHHHhch-HhhhchHHHHHHHHHHHHhCCchhH---------------------
Confidence 355677888876677889999999999998773 2222233344444444444433331
Q ss_pred hHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCCh--hhHHHHhcCCccchhh
Q psy12605 254 KMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD--EQTQVILNCDALSHFP 331 (845)
Q Consensus 254 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~~~i~~~~~l~~L~ 331 (845)
+...+-.++..++.+.+... +..+.+++-..+.+....+++.+..++..-. +.-..+ ..+.|.++
T Consensus 388 ---~~~Aeed~~~~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~diaP~~i 454 (516)
T KOG2956|consen 388 ---MRVAEEDCLTTLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLL--PDIAPCVI 454 (516)
T ss_pred ---HHHHHHHHHHHHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhh--hhhhhHHH
Confidence 33444444555666555421 2233444444677777788888888875432 221211 25889999
Q ss_pred HhhcCCchhhHHHHHHHHHHh
Q psy12605 332 ALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 332 ~lL~~~~~~~~~~a~~~L~nl 352 (845)
+...+.+..+|+.|.+||..+
T Consensus 455 qay~S~SS~VRKtaVfCLVam 475 (516)
T KOG2956|consen 455 QAYDSTSSTVRKTAVFCLVAM 475 (516)
T ss_pred HHhcCchHHhhhhHHHhHHHH
Confidence 999999999999999999987
|
|
| >PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1 | Back alignment and domain information |
|---|
Probab=92.50 E-value=3.2 Score=41.93 Aligned_cols=100 Identities=14% Similarity=0.064 Sum_probs=80.9
Q ss_pred hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhc
Q psy12605 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSF 464 (845)
Q Consensus 386 ~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~l 464 (845)
......|...|.-++--++..+..+.....+..|+++|+ ...+.++.+++.+|-.+..+++.....+.+.+|+..++.+
T Consensus 105 ~~li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~l 184 (257)
T PF08045_consen 105 DSLIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSL 184 (257)
T ss_pred hHHHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHH
Confidence 334556777888888888889999999999999999995 4678999999999999999999988899999999999999
Q ss_pred cCCCC-ChhHHHHHHHHHHHhh
Q psy12605 465 IKPDI-PISFLRNVTWVIVNLC 485 (845)
Q Consensus 465 l~~~~-~~~~~~~~~~~l~nL~ 485 (845)
++..+ +.+++-.++-+|.-..
T Consensus 185 lk~~~~~~~~r~K~~EFL~fyl 206 (257)
T PF08045_consen 185 LKSKSTDRELRLKCIEFLYFYL 206 (257)
T ss_pred HccccccHHHhHHHHHHHHHHH
Confidence 98644 4555556655554433
|
Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], []. |
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=92.50 E-value=0.63 Score=43.68 Aligned_cols=147 Identities=20% Similarity=0.196 Sum_probs=92.0
Q ss_pred ChhhHHhhhcC-CCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhh
Q psy12605 174 VVPPLLSFIKP-DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 252 (845)
Q Consensus 174 ~i~~Lv~ll~~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (845)
.++.++..+.. ..+.++|..+.-++..+-.. ........+-..+...+...+.+
T Consensus 4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l~~----~~~~~~~~~~~~i~~~~~~~~~d--------------------- 58 (157)
T PF11701_consen 4 ELDTLLTSLDMLRQPEEVRSHALVILSKLLDA----AREEFKEKISDFIESLLDEGEMD--------------------- 58 (157)
T ss_dssp CCCHHHHHHHCTTTSCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCHHCC---------------------
T ss_pred HHHHHHHHhcccCCCHhHHHHHHHHHHHHHHH----hHHHHHHHHHHHHHHHHccccch---------------------
Confidence 35566666654 44557888888888877311 11111223333444444444444
Q ss_pred hhHHHHHHHHHHHHHhhcCChhhH-HHHHhcCchhhHHhhcc--CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccch
Q psy12605 253 SKMKILVDTVWALSYLTDGGNDQI-QMVIDSGVVPSLIPLLS--HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329 (845)
Q Consensus 253 ~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~i~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~ 329 (845)
-...++.++..+-...++.. +.+...|+.+.++.+.. .++..++.+++++|..-|.+ ...+..+. ..+++.
T Consensus 59 ----~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d-~~~r~~I~-~~~~~~ 132 (157)
T PF11701_consen 59 ----SLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACID-KSCRTFIS-KNYVSW 132 (157)
T ss_dssp ----HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTS-HHHHHCCH-HHCHHH
T ss_pred ----hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHcc-HHHHHHHH-HHHHHH
Confidence 34456666666655555543 34556789999999997 78889999999999987654 45555444 458899
Q ss_pred hhHhhc-CCchh-hHHHHHHHHHH
Q psy12605 330 FPALLT-HPKEK-ICKEAVWFLSN 351 (845)
Q Consensus 330 L~~lL~-~~~~~-~~~~a~~~L~n 351 (845)
|-+.++ ++++. +|..|+-.|..
T Consensus 133 L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 133 LKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp HHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred HHHHHccccchHHHHHHHHHHHhc
Confidence 999995 45555 78888777764
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >KOG1788|consensus | Back alignment and domain information |
|---|
Probab=92.37 E-value=30 Score=41.33 Aligned_cols=115 Identities=14% Similarity=0.120 Sum_probs=74.7
Q ss_pred HHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc-
Q psy12605 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI- 382 (845)
Q Consensus 304 l~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~- 382 (845)
..+|-.+...++++.+.+.++.++..++.++ -+++-|...+..+..+....+.+.. ..-+-.++..|+++.-.
T Consensus 663 wDcLisllKnnteNqklFreanGvklilpfl--indehRSslLrivscLitvdpkqvh----hqelmalVdtLksgmvt~ 736 (2799)
T KOG1788|consen 663 WDCLISLLKNNTENQKLFREANGVKLILPFL--INDEHRSSLLRIVSCLITVDPKQVH----HQELMALVDTLKSGMVTR 736 (2799)
T ss_pred HHHHHHHHhccchhhHHHHhhcCceEEEEee--echHHHHHHHHHHHHHhccCccccc----HHHHHHHHHHHHhcceec
Confidence 5677788888888888899998888888888 3456677777777777555444211 12234566666653210
Q ss_pred ------cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC
Q psy12605 383 ------VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 424 (845)
Q Consensus 383 ------~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~ 424 (845)
.....+......+++.+..-+...+..+.+.++...|...|.
T Consensus 737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLh 784 (2799)
T KOG1788|consen 737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLH 784 (2799)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHH
Confidence 011234445566777777666666777888888888776664
|
|
| >PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain | Back alignment and domain information |
|---|
Probab=92.16 E-value=3.2 Score=43.76 Aligned_cols=175 Identities=13% Similarity=0.076 Sum_probs=109.1
Q ss_pred hhHHHHHH-hhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc
Q psy12605 215 IELLPALN-ILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293 (845)
Q Consensus 215 ~~~l~~L~-~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 293 (845)
.+.+..|+ ..+.+.++. ++..+..+|+-.+-.+.+... ..++.+...+.
T Consensus 25 ~~ll~~lI~P~v~~~~~~-------------------------vR~~al~cLGl~~Lld~~~a~-----~~l~l~~~~~~ 74 (298)
T PF12719_consen 25 ESLLDSLILPAVQSSDPA-------------------------VRELALKCLGLCCLLDKELAK-----EHLPLFLQALQ 74 (298)
T ss_pred HHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHHHHHHhChHHHH-----HHHHHHHHHHH
Confidence 35665554 667788887 888888888776655543222 23566777776
Q ss_pred CCchhhHHHHHHHHHHHhcCChh-hHHHH-------hcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDE-QTQVI-------LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~-~~~~i-------~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
.+++.++..|++++..+....+. ..... .....+..+.+.+.+.+++++..|+..++.+.-...-.- .
T Consensus 75 ~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~ 150 (298)
T PF12719_consen 75 KDDEEVKITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----P 150 (298)
T ss_pred hCCHHHHHHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----H
Confidence 67899999999999998753321 11111 122466778888888899999999999998754432111 1
Q ss_pred cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 366 ~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
..++..|+-...++. ..+++.++.--...+-..+..+++++. .+...+++.+-.+...
T Consensus 151 ~~vL~~Lll~yF~p~-t~~~~~LrQ~L~~Ffp~y~~s~~~~Q~-~l~~~f~~~l~~~~~~ 208 (298)
T PF12719_consen 151 PKVLSRLLLLYFNPS-TEDNQRLRQCLSVFFPVYASSSPENQE-RLAEAFLPTLRTLSNA 208 (298)
T ss_pred HHHHHHHHHHHcCcc-cCCcHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHHhC
Confidence 234455544444432 124567777777777777777765543 4444455555555443
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.86 E-value=4.9 Score=44.30 Aligned_cols=125 Identities=20% Similarity=0.196 Sum_probs=81.9
Q ss_pred hcCchhhHHhh-ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-CchhhHHHHHHHHHHhhcCChH
Q psy12605 281 DSGVVPSLIPL-LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 281 ~~g~i~~Lv~l-L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
+.|++..+++. ..+.+.+|+.+|.-+||-+|..+. ..++..+++|+. .+..+|...+.+|+-.|++.-.
T Consensus 549 n~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~---------~~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~ 619 (926)
T COG5116 549 NLGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR---------DLLVGTVELLSESHNFHVRAGVAVALGIACAGTGD 619 (926)
T ss_pred cchhHhhhheeecccCchHHHHHHHHheeeeEecCc---------chhhHHHHHhhhccchhhhhhhHHHhhhhhcCCcc
Confidence 34667777777 578899999999999999987643 356667788854 5788898888888877776544
Q ss_pred HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC-ChHhHHHHHHcCChHHHHHhhCCCCH
Q psy12605 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG-TSAQTQEVVAAGAVPLFLRLLMSPHS 428 (845)
Q Consensus 359 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~ 428 (845)
.. .+..|-.++.+ .+.-||+.|+-+++-+... +++....+ .+.+..+.+.+.+.++
T Consensus 620 ~~-------a~diL~~L~~D-----~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Khe 676 (926)
T COG5116 620 KV-------ATDILEALMYD-----TNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKHE 676 (926)
T ss_pred HH-------HHHHHHHHhhC-----cHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhhH
Confidence 31 12233333444 3678888888888887643 33221111 2345566666665544
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=91.80 E-value=1 Score=35.75 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcC
Q psy12605 106 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 173 (845)
Q Consensus 106 ~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g 173 (845)
.+.|+|+++++++. +.....+-+.+.++.++++.. ++...+|-.|..+|+-++. ..+..+.+.+.|
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~-T~~G~~~L~~~g 70 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISS-TEEGAEILDELG 70 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhC-CHHHHHHHHHcC
Confidence 56899999999874 555566666899999999987 5678999999999999994 456777766654
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=91.73 E-value=4.3 Score=47.04 Aligned_cols=160 Identities=11% Similarity=0.090 Sum_probs=95.1
Q ss_pred HHHHhcCchhhHHhhccC--------CchhhHHHHHHHHHHHhcCChhhHHHHhc-----C---CccchhhHhhc---C-
Q psy12605 277 QMVIDSGVVPSLIPLLSH--------KEVKVQTASLRAVGNIVTGTDEQTQVILN-----C---DALSHFPALLT---H- 336 (845)
Q Consensus 277 ~~~~~~g~i~~Lv~lL~~--------~~~~v~~~al~~L~nl~~~~~~~~~~i~~-----~---~~l~~L~~lL~---~- 336 (845)
+.+...+.+..++++... +..+....|+.+|.-+..- +..+..+.. . .++..+++.-. +
T Consensus 595 enflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~i-P~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i 673 (1516)
T KOG1832|consen 595 ENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSI-PDIQKALAHATLSNNRAYDGIAIILDAANGSNSI 673 (1516)
T ss_pred HHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEec-chHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence 445566777777777632 2245677888888766543 333333321 1 25666666552 2
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc------cCChhHHHHHHHHHHHHhcCChHhHHHH
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI------VLRPNLQFEAAWALTNIASGTSAQTQEV 410 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~------~~~~~v~~~a~~~L~~l~~~~~~~~~~l 410 (845)
-|++++..|+.++.|+++..++.+...+. .+....++. ........+... .....+
T Consensus 674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~--------~v~S~~g~~r~~l~~~~ks~~le~~l~----------~mw~~V 735 (1516)
T KOG1832|consen 674 VDPEIIQPALNVIINCVCPPPTTRPSTIV--------AVGSQSGDRRIFLGAGTKSAKLEQVLR----------QMWEAV 735 (1516)
T ss_pred cCHHHHHHHHhhhheeecCCCCcchhhhh--------hccccCCCccccccCCCchHHHHHHHH----------HHHHHH
Confidence 37999999999999998887665544332 111111100 001111111111 223455
Q ss_pred HHcCChHHHHHhhCCCCH-----HHHHHHHHHHHHhhcCChHHHHHHHhCC
Q psy12605 411 VAAGAVPLFLRLLMSPHS-----NVCEQAVWALGNIIGDGPQLRDYVINMG 456 (845)
Q Consensus 411 ~~~g~i~~Lv~lL~~~~~-----~v~~~a~~~L~nl~~~~~~~~~~l~~~g 456 (845)
..+.||..|+++|+...| -+|.-|+.+|..+++++ .+|+.+.+-.
T Consensus 736 r~ndGIkiLl~Ll~~k~P~t~aD~IRalAc~~L~GLaR~~-tVrQIltKLp 785 (1516)
T KOG1832|consen 736 RGNDGIKILLKLLQYKNPPTTADCIRALACRVLLGLARDD-TVRQILTKLP 785 (1516)
T ss_pred hcCccHHHHHHHHhccCCCCcHHHHHHHHHHHHhccccCc-HHHHHHHhCc
Confidence 567899999999996543 58899999999999875 5677665543
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=91.51 E-value=13 Score=37.49 Aligned_cols=201 Identities=13% Similarity=0.071 Sum_probs=113.3
Q ss_pred ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHH
Q psy12605 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPK 371 (845)
Q Consensus 292 L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 371 (845)
-+..+++.+...+++|..++.++..... -++..+..+.+.++...+.-+...+..+...++... +.+..
T Consensus 10 ~~~~~~~~~~~~L~~L~~l~~~~~~~~~-----~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f------~~L~~ 78 (234)
T PF12530_consen 10 GKISDPELQLPLLEALPSLACHKNVCVP-----PVLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF------PFLQP 78 (234)
T ss_pred cCCCChHHHHHHHHHHHHHhccCccchh-----HHHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH------HHHHH
Confidence 3567888999999999999877521111 134455555666665555555566666644443221 12222
Q ss_pred HHHHh--h---hcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhcCC
Q psy12605 372 IIANL--Q---KVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL-MSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 372 Lv~lL--~---~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL-~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
++..+ + ...+.....+.....+.++..++...++.. ...++.+...+ .+.++.++..++.+|..++...
T Consensus 79 ~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g-----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~ 153 (234)
T PF12530_consen 79 LLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG-----VDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE 153 (234)
T ss_pred HHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH-----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh
Confidence 22220 0 111111345666677788888888777622 23467777888 7788888889999999888422
Q ss_pred hHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHH-HhHHHHHHHhhcCCCh
Q psy12605 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI-IELLPALNILIHHHDT 513 (845)
Q Consensus 446 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~-~~~l~~l~~ll~~~d~ 513 (845)
+.+ =......+..-+..+....+.+..+..+..+..+......++.. ..++..+.....+.+.
T Consensus 154 --vvd---~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 154 --VVD---FYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred --hcc---HHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccccc
Confidence 111 11223444454555555566666666666555554333333333 4455555555555543
|
|
| >PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle | Back alignment and domain information |
|---|
Probab=91.29 E-value=1.6 Score=40.97 Aligned_cols=147 Identities=14% Similarity=0.136 Sum_probs=97.5
Q ss_pred hhhHHhhcc--CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 285 VPSLIPLLS--HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 285 i~~Lv~lL~--~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
+..++..|. ...+.++..++-++..+. +..++... ..+-+.+-..+...+.+-...+..++..+....++....
T Consensus 5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~l---~~~~~~~~-~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~ 80 (157)
T PF11701_consen 5 LDTLLTSLDMLRQPEEVRSHALVILSKLL---DAAREEFK-EKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE 80 (157)
T ss_dssp CCHHHHHHHCTTTSCCHHHHHHHHHHHHH---HHHHHHHH-HHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred HHHHHHHhcccCCCHhHHHHHHHHHHHHH---HHhHHHHH-HHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence 344444443 356678888888887774 22222221 123344555555555567778889999998888888888
Q ss_pred HH-hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC-CCCHH-HHHHHHHHHH
Q psy12605 363 VI-DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSN-VCEQAVWALG 439 (845)
Q Consensus 363 l~-~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~-~~~~~-v~~~a~~~L~ 439 (845)
++ ..|+++.++..+.... .+..++..++.++..-|.. +.++..+...+++.|-+++. ++++. ++..|+.+|+
T Consensus 81 l~~~eg~~~~l~~~~~~~~---~~~~~~~~~lell~aAc~d--~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~ 155 (157)
T PF11701_consen 81 LFLSEGFLESLLPLASRKS---KDRKVQKAALELLSAACID--KSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLC 155 (157)
T ss_dssp HCCTTTHHHHHHHHHH-CT---S-HHHHHHHHHHHHHHTTS--HHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHhccc---CCHHHHHHHHHHHHHHHcc--HHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHh
Confidence 86 4777888888887222 4778888888887766543 45666666778999999995 55555 7888888776
Q ss_pred H
Q psy12605 440 N 440 (845)
Q Consensus 440 n 440 (845)
.
T Consensus 156 K 156 (157)
T PF11701_consen 156 K 156 (157)
T ss_dssp H
T ss_pred c
Confidence 4
|
Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A. |
| >PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4 | Back alignment and domain information |
|---|
Probab=91.01 E-value=6.5 Score=46.76 Aligned_cols=223 Identities=14% Similarity=0.251 Sum_probs=135.1
Q ss_pred HHHhcCchhhHHhhccC-----CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc----CCc----hhhHHH
Q psy12605 278 MVIDSGVVPSLIPLLSH-----KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT----HPK----EKICKE 344 (845)
Q Consensus 278 ~~~~~g~i~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~----~~~----~~~~~~ 344 (845)
.+.+.|++..++.++.+ .........++.|..++.- ...++.+++.|+++.|+..+. ... ..+-+.
T Consensus 112 v~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~ 190 (802)
T PF13764_consen 112 VLAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQ 190 (802)
T ss_pred HhhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHH
Confidence 44577889999888854 2334666677777777654 677888999999999998883 323 455555
Q ss_pred HHHHHHHhhcCChH----HHHHHHhcC--------ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHH
Q psy12605 345 AVWFLSNITAGNQA----QVQAVIDAG--------LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVA 412 (845)
Q Consensus 345 a~~~L~nl~~~~~~----~~~~l~~~~--------~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 412 (845)
.+.++-.+...... ......... -+..+++.+.+.. ...++.+....+.+|-.++.++.+..+.+++
T Consensus 191 LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~-~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~ 269 (802)
T PF13764_consen 191 LLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPF-VRSNPQILQALARILPFLTYGNEEKMDALVE 269 (802)
T ss_pred HHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCcc-ccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH
Confidence 55544444322110 000001111 2556666665432 1146888899999999999999888777765
Q ss_pred cCChHHHHHhhC------CCCHHHHHHHHHHHHHhhc------CChHHHHHHHhCCChHHHHhccCCCC-------Ch--
Q psy12605 413 AGAVPLFLRLLM------SPHSNVCEQAVWALGNIIG------DGPQLRDYVINMGVVPPLLSFIKPDI-------PI-- 471 (845)
Q Consensus 413 ~g~i~~Lv~lL~------~~~~~v~~~a~~~L~nl~~------~~~~~~~~l~~~g~l~~L~~ll~~~~-------~~-- 471 (845)
. +-..++ ...++- ..-+.+++.++. .+...++.+++.|+++..++++.... +.
T Consensus 270 ~-----F~p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eW 343 (802)
T PF13764_consen 270 H-----FKPYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEW 343 (802)
T ss_pred H-----HHHhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHH
Confidence 3 222222 111111 233555666553 33678999999999998888875322 22
Q ss_pred ------hHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhc
Q psy12605 472 ------SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH 509 (845)
Q Consensus 472 ------~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~ 509 (845)
+-+..+..+|.-||++-.+.+.. ...+.++.+..|=+
T Consensus 344 k~~l~~psLp~iL~lL~GLa~gh~~tQ~~-~~~~~l~~lH~LEq 386 (802)
T PF13764_consen 344 KEFLSRPSLPYILRLLRGLARGHEPTQLL-IAEQLLPLLHRLEQ 386 (802)
T ss_pred HHHhcCCcHHHHHHHHHHHHhcCHHHHHH-HHhhHHHHHHHhhc
Confidence 23445667788888876543333 33557766665554
|
|
| >PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5 | Back alignment and domain information |
|---|
Probab=90.99 E-value=1.4 Score=34.95 Aligned_cols=67 Identities=12% Similarity=0.260 Sum_probs=50.9
Q ss_pred HHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccC
Q psy12605 600 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKT 679 (845)
Q Consensus 600 ~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 679 (845)
.+.|+|+++|+++. +.-++.+.+.++++.++++..
T Consensus 4 lKaaLWaighIgss-~~G~~lL~~~~iv~~iv~~a~-------------------------------------------- 38 (73)
T PF14668_consen 4 LKAALWAIGHIGSS-PLGIQLLDESDIVEDIVKIAE-------------------------------------------- 38 (73)
T ss_pred HHHHHHHHHhHhcC-hHHHHHHhhcCHHHHHHHHHH--------------------------------------------
Confidence 57899999999864 444555667788998888763
Q ss_pred ccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcC
Q psy12605 680 SPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEG 738 (845)
Q Consensus 680 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~ 738 (845)
.++...+|-.|.++|+-++ .+.+-...|.+.|
T Consensus 39 -------------------------~s~v~siRGT~fy~Lglis--~T~~G~~~L~~~g 70 (73)
T PF14668_consen 39 -------------------------NSPVLSIRGTCFYVLGLIS--STEEGAEILDELG 70 (73)
T ss_pred -------------------------hCCccchHHHHHHHHHHHh--CCHHHHHHHHHcC
Confidence 5566788999999999887 6777666666655
|
|
| >PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length | Back alignment and domain information |
|---|
Probab=90.85 E-value=2.6 Score=39.70 Aligned_cols=133 Identities=12% Similarity=0.143 Sum_probs=79.6
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
+++.|..+|+.+.++.+|+++.++|+.|..-++-.-+.+... .+.- .-...+.......+...+ +...+++.
T Consensus 11 LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~--~~~~--~~~~~~~~~~~~~l~~~~-~~~~~ee~--- 82 (160)
T PF11865_consen 11 LLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKS--LDSK--SSENSNDESTDISLPMMG-ISPSSEEY--- 82 (160)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhccccc--CCcc--ccccccccchhhHHhhcc-CCCchHHH---
Confidence 578899999888789999999999999987655433322211 0000 001111122222221111 11122222
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
.-..++..|++.|+.++-..-...++.++.++.+...... .......+|.+...++..++.
T Consensus 83 -y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~ 143 (160)
T PF11865_consen 83 -YPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDS 143 (160)
T ss_pred -HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHH
Confidence 2223577888888877655666678888888886653333 667788999999999866556
|
It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner []. |
| >PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=90.72 E-value=21 Score=40.35 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=40.3
Q ss_pred CCCccchhHHHHHHHhhcccCCHHHHHHHHHc--CCchHHhhhhccccHHHHHHHHHHHHHHH
Q psy12605 706 QGEFQTQKEAAWAISNLTISGNRDQVAKLVQE--GVIPPFCDLLSCKDAQVIQVVLDGINNML 766 (845)
Q Consensus 706 ~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~--~~i~~L~~~L~~~d~~~~~~al~~L~~l~ 766 (845)
..+..+-++|...+..+......+....+--. -+++.|...++.+++.+-...+..+.+++
T Consensus 267 ~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 267 KRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL 329 (464)
T ss_pred cccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence 34456667888888888743322333333222 27777888888888877777888888888
|
|
| >PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length | Back alignment and domain information |
|---|
Probab=90.59 E-value=17 Score=36.73 Aligned_cols=140 Identities=20% Similarity=0.208 Sum_probs=89.2
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i 169 (845)
+|.|+.-+....+++.+...+..|..++.++...... .+..|..+.+.+..+.+.-+.+.+..+...++..-
T Consensus 2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--- 73 (234)
T PF12530_consen 2 LPLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--- 73 (234)
T ss_pred hHHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH---
Confidence 5666665656788999999999999999864222222 45667777777777777777787777775544221
Q ss_pred HhcCChhhHHhh---------hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhc-ccCCchhhHHHHHH
Q psy12605 170 INMGVVPPLLSF---------IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI-HHHDTSVSIYLWLS 239 (845)
Q Consensus 170 ~~~g~i~~Lv~l---------l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll-~~~~~~~~~~~~~~ 239 (845)
+.+..++.. ...+..-+.......++..+|...+. .....++.+...+ .+.++.
T Consensus 74 ---~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~-----~g~~ll~~ls~~L~~~~~~~-------- 137 (234)
T PF12530_consen 74 ---PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD-----HGVDLLPLLSGCLNQSCDEV-------- 137 (234)
T ss_pred ---HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh-----hHHHHHHHHHHHHhccccHH--------
Confidence 223333333 11222334444556788888887633 3456777777777 555555
Q ss_pred HhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 240 IIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
++..++.++..+..
T Consensus 138 -----------------~~alale~l~~Lc~ 151 (234)
T PF12530_consen 138 -----------------AQALALEALAPLCE 151 (234)
T ss_pred -----------------HHHHHHHHHHHHHH
Confidence 77777777777763
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=90.59 E-value=5.7 Score=38.08 Aligned_cols=144 Identities=19% Similarity=0.209 Sum_probs=94.1
Q ss_pred hhHHHHHHHHHHHhcCChh-----hHHHHh-c-----CCccchhhHh-hcCCchhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 298 KVQTASLRAVGNIVTGTDE-----QTQVIL-N-----CDALSHFPAL-LTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 298 ~v~~~al~~L~nl~~~~~~-----~~~~i~-~-----~~~l~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
++|..|+.+|..++...+. .-..+. + ...-+.|+.+ +.++++.+|..|+.++..+..+........-+
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~ 80 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEE 80 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 3788899999998876221 111122 1 1233444444 47889999999999999998876555443332
Q ss_pred cC-------------------ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHH-HHHcCChHHHHHhhCC
Q psy12605 366 AG-------------------LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE-VVAAGAVPLFLRLLMS 425 (845)
Q Consensus 366 ~~-------------------~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-l~~~g~i~~Lv~lL~~ 425 (845)
.+ +-..|+..+..+ .+..+......++..++...+-.+-. =.-...+..+-.++.+
T Consensus 81 ~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E----~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~ 156 (182)
T PF13251_consen 81 SKGPSGSFTSLSSTLASMIMELHRGLLLALQAE----KSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRH 156 (182)
T ss_pred cCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc----cccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhc
Confidence 21 233455555555 46778888999999999887754332 1112234556667778
Q ss_pred CCHHHHHHHHHHHHHhhcCC
Q psy12605 426 PHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~ 445 (845)
.+.+++..++.+++.+....
T Consensus 157 ~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 157 RDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred CCCcHHHHHHHHHHHHHcCC
Confidence 99999999999999887644
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=90.24 E-value=1.9 Score=48.56 Aligned_cols=158 Identities=15% Similarity=0.191 Sum_probs=111.4
Q ss_pred HHHHHHHHHcC----CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 46 LDMLVVEAARK----DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 46 i~~lv~~~l~~----~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
+.++|.+...+ +|+..|..|...|.++.+...+ ... .-+|.|+..+..+++|.+|..|...|+.++-.-.
T Consensus 893 F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~-fc~-----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN 966 (1128)
T COG5098 893 FKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFE-FCS-----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFN 966 (1128)
T ss_pred hhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHH-HHH-----HHHHHHHHHHhhCCCcceeccceeeccccceehh
Confidence 33444355555 6899999999999998765432 222 2389999999888999999999999998764221
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
...+ ..-..|.+-|.+.+..++..|+.++.++.-.+ .+--.|-++.+..+|..+ +..+...|-..+..+
T Consensus 967 ~~~d-----e~t~yLyrrL~De~~~V~rtclmti~fLilag-----q~KVKGqlg~ma~~L~de-da~Isdmar~fft~~ 1035 (1128)
T COG5098 967 TTAD-----EHTHYLYRRLGDEDADVRRTCLMTIHFLILAG-----QLKVKGQLGKMALLLTDE-DAEISDMARHFFTQI 1035 (1128)
T ss_pred hhhH-----HHHHHHHHHhcchhhHHHHHHHHHHHHHHHcc-----ceeeccchhhhHhhccCC-cchHHHHHHHHHHHH
Confidence 1222 24567788888999999999999999986432 233347788888888877 557888888888888
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhc
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILI 225 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll 225 (845)
+..++. ...|.+..+..+.
T Consensus 1036 a~KdNt-----~yn~fidifs~ls 1054 (1128)
T COG5098 1036 AKKDNT-----MYNGFIDIFSTLS 1054 (1128)
T ss_pred Hhcccc-----hhhhhHHHHHHcC
Confidence 876532 2345555544443
|
|
| >PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing | Back alignment and domain information |
|---|
Probab=90.12 E-value=13 Score=40.61 Aligned_cols=151 Identities=13% Similarity=0.238 Sum_probs=103.4
Q ss_pred HHHHHHHHHHhc-C--ChhhHHHHhc-CCccchhhHhhcCC---chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHH
Q psy12605 301 TASLRAVGNIVT-G--TDEQTQVILN-CDALSHFPALLTHP---KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKII 373 (845)
Q Consensus 301 ~~al~~L~nl~~-~--~~~~~~~i~~-~~~l~~L~~lL~~~---~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv 373 (845)
...++++..+.. + .+.....+++ ...+..|..++.+. .+.+-..|+.++..+..+.|.....+.+.|+++.++
T Consensus 78 K~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L 157 (379)
T PF06025_consen 78 KSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFL 157 (379)
T ss_pred HHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHH
Confidence 344566666655 2 2223333455 44555666666554 367888899999999899999989999999999999
Q ss_pred HHhh-hcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCH-------HHHHHHHHHHHHhhcCC
Q psy12605 374 ANLQ-KVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS-------NVCEQAVWALGNIIGDG 445 (845)
Q Consensus 374 ~lL~-~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~-------~v~~~a~~~L~nl~~~~ 445 (845)
+.+. ..-. .+.++-...-.++..||-+. ...+.+.+.+.++.+++++.+++. +.-...-.++-.+.++.
T Consensus 158 ~~i~~~~i~--~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~ 234 (379)
T PF06025_consen 158 DAITAKGIL--PSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHH 234 (379)
T ss_pred HHHhccCCC--CcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccC
Confidence 9998 3311 35566666667777777654 567778889999999999988653 23333444555677888
Q ss_pred hHHHHHHHh
Q psy12605 446 PQLRDYVIN 454 (845)
Q Consensus 446 ~~~~~~l~~ 454 (845)
|..|..+.+
T Consensus 235 p~Lk~~i~~ 243 (379)
T PF06025_consen 235 PSLKPDIID 243 (379)
T ss_pred HHHHHHHHH
Confidence 887776544
|
This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO. |
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=89.67 E-value=26 Score=38.82 Aligned_cols=246 Identities=14% Similarity=0.142 Sum_probs=128.7
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
+..++...+..|+.+++|+|+.=|+....+|.++-+.-...|..++.. +...+.+++.....-.-...++.++..+..+
T Consensus 127 ~~~i~~~fi~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~~-i~~~~~~fi~e~~~~~gI~elLeil~sii~g 205 (409)
T PF01603_consen 127 KKYIDQKFIKKLLELFDSPDPRERDYLKTILHRIYGKFPNLRSFIRKS-INNIFYRFIYETERHNGIAELLEILGSIING 205 (409)
T ss_dssp TTTS-HHHHHHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTTHHHHHHH-HHHHHHHHHHTTS--STHHHHHHHHHHHHTT
T ss_pred HHHcCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhcCcccccCHHHHHHHHHHHHhc
Confidence 335556678899999999999999999999988876555666666543 3445566665443333445566666666666
Q ss_pred CCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCc
Q psy12605 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 284 (845)
-..+-......-....+..+.....-.. --..-..++......++..... +
T Consensus 206 f~~plk~eh~~fl~~vllPLh~~~~~~~------------------------y~~~L~~~~~~f~~kdp~l~~~-----~ 256 (409)
T PF01603_consen 206 FAVPLKEEHKQFLRKVLLPLHKSPHLSS------------------------YHQQLSYCVVQFLEKDPSLAEP-----V 256 (409)
T ss_dssp --SS--HHHHHHHHHTTGGGGGSTGGGG------------------------THHHHHHHHHHHHHH-GGGHHH-----H
T ss_pred cCCCCcHHHHHHHHHHHHHHhcCCcHHH------------------------HHHHHHHHHHHHHHhCchhHHH-----H
Confidence 5333333333333344444444332220 1111222222222222222222 2
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCCh-hhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTD-EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+..++...-..+..=...-+.-+..+...-+ .....+. ......+..++++.+-.+.+.|+..+.| +.....+
T Consensus 257 i~~llk~WP~t~s~Kev~FL~el~~il~~~~~~~f~~i~-~~lf~~la~ci~S~h~qVAErAl~~w~n-----~~~~~li 330 (409)
T PF01603_consen 257 IKGLLKHWPKTNSQKEVLFLNELEEILEVLPPEEFQKIM-VPLFKRLAKCISSPHFQVAERALYFWNN-----EYFLSLI 330 (409)
T ss_dssp HHHHHHHS-SS-HHHHHHHHHHHHHHHTT--HHHHHHHH-HHHHHHHHHHHTSSSHHHHHHHHGGGGS-----HHHHHHH
T ss_pred HHHHHHhCCCCCchhHHHHHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHhCCCCHHHHHHHHHHHCC-----HHHHHHH
Confidence 3344444434444444455566666654322 2112121 2356777788888888888888776655 2222222
Q ss_pred Hh--cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 364 ID--AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 364 ~~--~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
.+ ..++|.++..+.......=+..++..|..++.-+..-+++.
T Consensus 331 ~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~l 375 (409)
T PF01603_consen 331 SQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKL 375 (409)
T ss_dssp HCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHH
T ss_pred HhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHH
Confidence 11 23567777776543221125678888888888887766543
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=89.43 E-value=6.3 Score=42.18 Aligned_cols=180 Identities=13% Similarity=0.149 Sum_probs=120.2
Q ss_pred HHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhcc-CCHHHHHHHHHC-CC-hHHHHHHhhhhhhhhhhhcccCCchhH
Q psy12605 577 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDA-GL-LPKIIANLQKRSCKILNKYLDNNNMVL 653 (845)
Q Consensus 577 ~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~-~~~~~~~~~~~~-~~-l~~L~~ll~~~~~~~~~~~~~~~~~~~ 653 (845)
+.+++.. ++.+..-+.+.++.+...++..+..++. ......+.+... ++ ++.+.+++..+...
T Consensus 51 ~~iL~~~-~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~------------- 116 (330)
T PF11707_consen 51 RSILQNH-LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKE------------- 116 (330)
T ss_pred HHHHHHH-HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhcccccc-------------
Confidence 4444443 7788888888889999999999999998 666666666542 21 33444444211000
Q ss_pred HHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHH
Q psy12605 654 HNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAK 733 (845)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 733 (845)
.. ... ..-... +.+|......+..+...+++.-...
T Consensus 117 -------------------~~---~~~---------------------~~~~~~-~siR~~fI~F~Lsfl~~~~~~~~~~ 152 (330)
T PF11707_consen 117 -------------------KE---KDS---------------------ESSKSK-PSIRTNFIRFWLSFLSSGDPELKRD 152 (330)
T ss_pred -------------------cc---ccc---------------------cccccC-cCHHHHHHHHHHHHHccCCHHHHHH
Confidence 00 000 000112 4899999999888888889988888
Q ss_pred HH-HcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCH----HHHHHHHHHH
Q psy12605 734 LV-QEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENV----EIYKLAYDII 808 (845)
Q Consensus 734 l~-~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~----~v~~~a~~~l 808 (845)
++ +.+.+..+.+-|...+.+++...+.+|..-+-..+.-.....-.+.....+.+|..+...+++ .+.+.|.++|
T Consensus 153 lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~~~~~~~~~~~vh~fL 232 (330)
T PF11707_consen 153 LLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDGEDEKSSVADLVHEFL 232 (330)
T ss_pred HHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccCCcccchHHHHHHHHH
Confidence 77 556788888888888889999999999864433332112233344555577888888877777 8999999999
Q ss_pred HHhcCc
Q psy12605 809 ERYFSE 814 (845)
Q Consensus 809 ~~~~~~ 814 (845)
..+...
T Consensus 233 ~~lcT~ 238 (330)
T PF11707_consen 233 LALCTD 238 (330)
T ss_pred HHHhcC
Confidence 988753
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis | Back alignment and domain information |
|---|
Probab=89.29 E-value=34 Score=36.55 Aligned_cols=207 Identities=14% Similarity=0.141 Sum_probs=139.3
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhh-----HHHHHh--cCchhh
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQ-----IQMVID--SGVVPS 287 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~-----~~~~~~--~g~i~~ 287 (845)
.+.+..|+..+..-+-+ .+.+++....++.....+. ...+.+ ..++..
T Consensus 75 ~dll~~Li~~L~~L~fE-------------------------srKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~ 129 (335)
T PF08569_consen 75 SDLLYLLIRNLPKLDFE-------------------------SRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDI 129 (335)
T ss_dssp HTHHHHHHHTGGGS-HH-------------------------HHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHH
T ss_pred hCHHHHHHHHhhhCCCc-------------------------ccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHH
Confidence 45666777666665555 6677777777766543222 222222 123333
Q ss_pred HHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcC
Q psy12605 288 LIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG 367 (845)
Q Consensus 288 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~ 367 (845)
|+..- .++++...+-..|+.++.. +.....+.....+..+.+.+..++=++...|..++..+...........+..+
T Consensus 130 L~~gy--~~~dial~~g~mlRec~k~-e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n 206 (335)
T PF08569_consen 130 LLRGY--ENPDIALNCGDMLRECIKH-ESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNN 206 (335)
T ss_dssp HHHGG--GSTTTHHHHHHHHHHHTTS-HHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHT
T ss_pred HHHHh--cCccccchHHHHHHHHHhh-HHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 33333 3566777777778877665 66667777777888888888889999999999999998777777666666543
Q ss_pred ---ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh---HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q psy12605 368 ---LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ---TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441 (845)
Q Consensus 368 ---~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~---~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl 441 (845)
++.....+|.+ .+.-+|+.+...|+.+....... .+++-+..-+..++.+|.+.+..++..|..++--+
T Consensus 207 ~d~ff~~~~~Ll~s-----~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvF 281 (335)
T PF08569_consen 207 YDRFFQKYNKLLES-----SNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVF 281 (335)
T ss_dssp HHHHHHHHHHHCT------SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC-----CCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHH
Confidence 56666777766 48999999999999998654432 45555566788899999999999999999998887
Q ss_pred hcC---ChHHHHHHHh
Q psy12605 442 IGD---GPQLRDYVIN 454 (845)
Q Consensus 442 ~~~---~~~~~~~l~~ 454 (845)
..+ ++...+.+..
T Consensus 282 VANp~K~~~I~~iL~~ 297 (335)
T PF08569_consen 282 VANPNKPPPIVDILIK 297 (335)
T ss_dssp HH-SS-BHHHHHHHHH
T ss_pred HhCCCCChHHHHHHHH
Confidence 764 3445555543
|
In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A. |
| >KOG1243|consensus | Back alignment and domain information |
|---|
Probab=89.01 E-value=15 Score=42.14 Aligned_cols=252 Identities=17% Similarity=0.147 Sum_probs=152.9
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCC-ChhHHHHHHHHHHHHhcCChhhHHHHHHc
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD-RPNLQFEAAWALTNIASGTSAQTQEVVAA 130 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~la~~~~~~~~~i~~~ 130 (845)
.-+.-.+.+.+..-...|...+.. .-+.++...++|.|+..+...+ .+.+.... .-+...-.. ++ .+.
T Consensus 261 eel~lks~~eK~~Ff~~L~~~l~~----~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl-~k~~k~ld~-~e-----yq~ 329 (690)
T KOG1243|consen 261 EELRLKSVEEKQKFFSGLIDRLDN----FPEEIIASKVLPILLAALEFGDAASDFLTPL-FKLGKDLDE-EE-----YQV 329 (690)
T ss_pred HhcccCcHHHHHHHHHHHHHHHhh----hhHHHHHHHHHHHHHHHhhccccchhhhhHH-HHhhhhccc-cc-----ccc
Confidence 455566666666666666553332 2256667778888888885443 12222111 112222111 11 556
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
+.+|.|++++++++..+|-.-+.-+-+.... ..+.+++.-++|.+..-+... +..+|+.++.++..++..-...
T Consensus 330 ~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~---Lt~~~~~d~I~phv~~G~~DT-n~~Lre~Tlksm~~La~kL~~~-- 403 (690)
T KOG1243|consen 330 RIIPVLLKLFKSPDRQIRLLLLQYIEKYIDH---LTKQILNDQIFPHVALGFLDT-NATLREQTLKSMAVLAPKLSKR-- 403 (690)
T ss_pred chhhhHHHHhcCcchHHHHHHHHhHHHHhhh---cCHHhhcchhHHHHHhhcccC-CHHHHHHHHHHHHHHHhhhchh--
Confidence 7999999999999999998877766666532 344556666788888777666 4589999888888877543221
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHh
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 290 (845)
......+..|.++-.++... ++....-||..++.+.... ..+.-.+.....
T Consensus 404 -~Ln~Ellr~~ar~q~d~~~~-------------------------irtntticlgki~~~l~~~---~R~~vL~~aftr 454 (690)
T KOG1243|consen 404 -NLNGELLRYLARLQPDEHGG-------------------------IRTNTTICLGKIAPHLAAS---VRKRVLASAFTR 454 (690)
T ss_pred -hhcHHHHHHHHhhCccccCc-------------------------ccccceeeecccccccchh---hhccccchhhhh
Confidence 12234555555544434444 5555555565555442211 112223344555
Q ss_pred hccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 291 LLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 291 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
.++++-..-+.+++..+......-+. .-+...++|.+.-+.-+++..+|..|..++...
T Consensus 455 alkdpf~paR~a~v~~l~at~~~~~~---~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~f 513 (690)
T KOG1243|consen 455 ALKDPFVPARKAGVLALAATQEYFDQ---SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQF 513 (690)
T ss_pred hhcCCCCCchhhhhHHHhhcccccch---hhhhhhccccccccccCcccchhhHHHHHHHHH
Confidence 67777777888888877765433221 223346888899888888888898887777654
|
|
| >COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.66 E-value=53 Score=38.05 Aligned_cols=156 Identities=17% Similarity=0.092 Sum_probs=94.8
Q ss_pred hhhcHHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-------CChhHHHHHHHH
Q psy12605 42 AQVNLDMLVVEAAR--KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-------DRPNLQFEAAWA 112 (845)
Q Consensus 42 ~~~~i~~lv~~~l~--~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~~i~~~a~~~ 112 (845)
.+.+-.+++++..+ ++...--..|+..+....+..+. .. -.|+++-++..|..+ +++.-...|++.
T Consensus 365 fEnDp~eyirry~df~d~g~spdlaal~fl~~~~sKrke---~T--fqgiLsf~~sil~qsaa~psn~dnarq~egalr~ 439 (970)
T COG5656 365 FENDPDEYIRRYYDFFDNGLSPDLAALFFLIISKSKRKE---ET--FQGILSFLLSILGQSAATPSNIDNARQAEGALRL 439 (970)
T ss_pred HhcCHHHHHHHhcchhcCCCChhHHHHHHHHHHhcccch---hh--hhhHHHHHHHHHhcccCCCCccccHHHHhhHHHH
Confidence 44455555544332 22222224455555544433221 21 257899999999433 233444566666
Q ss_pred HHHHhc--CChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHH
Q psy12605 113 LTNIAS--GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISF 190 (845)
Q Consensus 113 L~~la~--~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~ 190 (845)
+.++.+ .-..-...+++.=.++.++..++++.--++.+|+..+..+..+- ++..+-..+.+...++++++ +..+
T Consensus 440 lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace~is~~eeDf---kd~~ill~aye~t~ncl~nn-~lpv 515 (970)
T COG5656 440 LASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACEFISTIEEDF---KDNGILLEAYENTHNCLKNN-HLPV 515 (970)
T ss_pred HHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHhcC-Ccch
Confidence 666654 22333455777778899999999999999999999999996443 33332223445555666653 5567
Q ss_pred HHHHHHHHHHhhcCCC
Q psy12605 191 LRNVTWVIVNLCRNKD 206 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~ 206 (845)
+..|+-++.-+..+..
T Consensus 516 ~ieAalAlq~fi~~~q 531 (970)
T COG5656 516 MIEAALALQFFIFNEQ 531 (970)
T ss_pred hhhHHHHHHHHHhchh
Confidence 8888888888877763
|
|
| >KOG4464|consensus | Back alignment and domain information |
|---|
Probab=88.66 E-value=37 Score=36.29 Aligned_cols=270 Identities=17% Similarity=0.186 Sum_probs=146.7
Q ss_pred hHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhh---cccCCchhhHHHHHHHhhhChhhHHhhhh
Q psy12605 177 PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNIL---IHHHDTSVSIYLWLSIIEKNPQISKILVS 253 (845)
Q Consensus 177 ~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~l---l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 253 (845)
.++..|.++.+...+..+..++.-|+++.+..... ........|..+ -..++.. |. ..
T Consensus 49 ~i~~Vle~~~p~t~~v~~LetvrILSRdk~~L~~~-~~~q~~~~ll~~A~ls~~e~sl-------------~~-----v~ 109 (532)
T KOG4464|consen 49 RIFEVLENGEPLTHRVVCLETVRILSRDKDGLEPL-TNDQLCQKLLALAELSSNENSL-------------PT-----VA 109 (532)
T ss_pred HHHHHHhcCCCchhhhhHHHHHHHHhccccccccc-cchHHHHHHHHHHHhccccCCC-------------Cc-----cc
Confidence 35556666655567777888888888877544332 223333333333 2222111 00 00
Q ss_pred hHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC-----CchhhHHHHHHHHHHHhcCChh-hHHHHhcCCcc
Q psy12605 254 KMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-----KEVKVQTASLRAVGNIVTGTDE-QTQVILNCDAL 327 (845)
Q Consensus 254 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~~~-~~~~i~~~~~l 327 (845)
++++...++.||+++..++......+.+......+.+.+.. -...+...-++.|.-+..-... ..+.+.+.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 13488899999999999988877777788777777766622 1223455556666555543334 44556677899
Q ss_pred chhhHhhcCC---c------------hhhHHHHHHHHHHhhcCChHHHH--HHHh----cCChHHHHHHhhhcccccCCh
Q psy12605 328 SHFPALLTHP---K------------EKICKEAVWFLSNITAGNQAQVQ--AVID----AGLLPKIIANLQKVGRIVLRP 386 (845)
Q Consensus 328 ~~L~~lL~~~---~------------~~~~~~a~~~L~nl~~~~~~~~~--~l~~----~~~i~~Lv~lL~~~~~~~~~~ 386 (845)
+.+.+.+.++ + .+..-+++.++.|++.+...... .-+. ..+...++..+.... .+.
T Consensus 190 ~~lt~~led~lgidse~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~---~~~ 266 (532)
T KOG4464|consen 190 ELLTNWLEDKLGIDSEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRD---STE 266 (532)
T ss_pred HHHHHHhhccccCCCCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccc---hHH
Confidence 9999988542 1 13345677788888765432211 1111 112222222221110 122
Q ss_pred hHHHHHHHHHHHH--------hc--CChHhHH--HHHHcCChHHHHHhhCC---------CCHHHHHHHHHHHHHhhcCC
Q psy12605 387 NLQFEAAWALTNI--------AS--GTSAQTQ--EVVAAGAVPLFLRLLMS---------PHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 387 ~v~~~a~~~L~~l--------~~--~~~~~~~--~l~~~g~i~~Lv~lL~~---------~~~~v~~~a~~~L~nl~~~~ 445 (845)
++...+...+.|. +. ......+ ...+..-...+..+|.. +..+.....+.+|..++.++
T Consensus 267 elhshav~~L~nv~~k~~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~ 346 (532)
T KOG4464|consen 267 ELHSHAVNLLDNVPEKCLDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSH 346 (532)
T ss_pred HHhhccCCccCCchhhhhhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhh
Confidence 2222222222221 11 1111222 22222334555555543 23356678899999999999
Q ss_pred hHHHHHHHhCCChHHHHhccCCCC
Q psy12605 446 PQLRDYVINMGVVPPLLSFIKPDI 469 (845)
Q Consensus 446 ~~~~~~l~~~g~l~~L~~ll~~~~ 469 (845)
...|..+.+. ++|+|...-+...
T Consensus 347 R~~Rkylr~q-VLPPLrDV~~RPE 369 (532)
T KOG4464|consen 347 RVMRKYLRQQ-VLPPLRDVSQRPE 369 (532)
T ss_pred HHHHHHHHHh-cCCchhhhhcCcc
Confidence 8888877655 8888887665443
|
|
| >KOG2005|consensus | Back alignment and domain information |
|---|
Probab=88.47 E-value=51 Score=37.62 Aligned_cols=155 Identities=18% Similarity=0.215 Sum_probs=91.6
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCc----cHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHH
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNP----PIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~----~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l 116 (845)
+...+++-+| +.++++|++.+..|+..++......... +...=.-..-.+.|.++.++-.+++.+...+.+|.-+
T Consensus 45 ~lk~dLellV-ervqdpd~~Lq~~aLe~lr~~irsStSSmtsvpkPlKFLrphy~~Lk~i~~~~~~~n~Kk~laDIlSvL 123 (878)
T KOG2005|consen 45 QLKGDLELLV-ERVQDPDPDLQKAALESLREEIRSSTSSMTSVPKPLKFLRPHYGVLKEIYESMADSNLKKWLADILSVL 123 (878)
T ss_pred HhhhhHHHHH-HHhcCCChHHHHHHHHHHHHHHHhcccccccCCchhhhhccchhHHHHHHHhccCchhHhHHHHHHHHH
Confidence 4566788888 9999999999999999999886654321 1100001222344555554334567888999999998
Q ss_pred hcCChhhHHHHH-------------HcCChHHHHHhhCC---------C-ChhHHHHHHHHHHHhcCCCh--hhHHHHHh
Q psy12605 117 ASGTSAQTQEVV-------------AAGAVPLFLRLLMS---------P-HSNVCEQAVWALGNIIGDGP--QLRDYVIN 171 (845)
Q Consensus 117 a~~~~~~~~~i~-------------~~g~i~~L~~lL~s---------~-~~~v~~~a~~~L~nla~~~~--~~r~~i~~ 171 (845)
|....+....+. .+..|..|..-+.. + ..++.+-+..++-..-.++. +..+.+++
T Consensus 124 amt~se~~~~l~YRl~G~~~d~~~WGHeYVRhLageIaee~~~~~~e~~~~~dl~~l~~~iV~f~mkHNAE~eAiDlL~E 203 (878)
T KOG2005|consen 124 AMTMSERGEHLAYRLLGSIIDLGSWGHEYVRHLAGEIAEEYNNREMEAPSKADLLDLVQEIVPFHMKHNAEFEAIDLLME 203 (878)
T ss_pred heeecccchheeeeeccccCChhhhHHHHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 865444433311 11123333332211 1 13445555555555555553 35677888
Q ss_pred cCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 172 MGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 172 ~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
-+.|+.++...... ..++.+.+..+
T Consensus 204 ve~id~l~~~Vd~~---n~~RvclYl~s 228 (878)
T KOG2005|consen 204 VEGIDLLLDYVDEH---NYQRVCLYLTS 228 (878)
T ss_pred hhhHhHHHHHhhhh---hHHHHHHHHHH
Confidence 89999999888765 34455544443
|
|
| >COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.42 E-value=1.9 Score=47.33 Aligned_cols=99 Identities=19% Similarity=0.228 Sum_probs=77.1
Q ss_pred CccchhhHh-hcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPAL-LTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~l-L~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
|++..++.. .++.++++|++|..+|+-+|..+++ .++..+++|... .++.||...+.+|+-.|.+.
T Consensus 551 ~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~s----hN~hVR~g~AvaLGiacag~ 617 (926)
T COG5116 551 GVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSES----HNFHVRAGVAVALGIACAGT 617 (926)
T ss_pred hhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhc----cchhhhhhhHHHhhhhhcCC
Confidence 445555555 4678899999999999998877654 466777888766 58999999999999988766
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
.... ++..|-.++.++++-||..|+-+++-|..
T Consensus 618 G~~~-------a~diL~~L~~D~~dfVRQ~AmIa~~mIl~ 650 (926)
T COG5116 618 GDKV-------ATDILEALMYDTNDFVRQSAMIAVGMILM 650 (926)
T ss_pred ccHH-------HHHHHHHHhhCcHHHHHHHHHHHHHHHHh
Confidence 4332 46677788889999999999999888764
|
|
| >PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=88.08 E-value=1.3 Score=43.68 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHhcC-------CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHH-HcC
Q psy12605 60 ELQLLAVQSARKLLSSDKNPPIEALIHSG-------ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV-AAG 131 (845)
Q Consensus 60 ~~~~~a~~~l~~ll~~~~~~~~~~i~~~g-------~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~-~~g 131 (845)
+-|..|+++|.+++-.+.| ++.++..+ ++..|+++|....++-.|..|...|.++|.+++.....+. +.+
T Consensus 139 SPqrlaLEaLcKLsV~e~N--VDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~ 216 (257)
T PF12031_consen 139 SPQRLALEALCKLSVIENN--VDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKP 216 (257)
T ss_pred CHHHHHHHHHHHhheeccC--cceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhc
Confidence 4578899999999876644 45544433 5677788886667889999999999999998777776544 478
Q ss_pred ChHHHHHhhCCC
Q psy12605 132 AVPLFLRLLMSP 143 (845)
Q Consensus 132 ~i~~L~~lL~s~ 143 (845)
+|..|+.++++.
T Consensus 217 ~i~~Li~FiE~a 228 (257)
T PF12031_consen 217 CISHLIAFIEDA 228 (257)
T ss_pred hHHHHHHHHHHH
Confidence 999999998765
|
This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM. |
| >KOG2025|consensus | Back alignment and domain information |
|---|
Probab=87.67 E-value=17 Score=41.60 Aligned_cols=106 Identities=24% Similarity=0.185 Sum_probs=76.5
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.|++..++.-. .+++..+|...+..|..+... .......+-.+....+..-+.+..+.+|.+|+.+|..+=++..+
T Consensus 84 ~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~-~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~d-- 159 (892)
T KOG2025|consen 84 AGTFYHLLRGT-ESKDKKVRFRVLQILALLSDE-NAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKD-- 159 (892)
T ss_pred HHHHHHHHhcc-cCcchhHHHHHHHHHHHHhcc-ccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCC--
Confidence 45555555555 356778999999999999753 23344444457888888888888999999999999999743211
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
-+..+...+..+++++.+.++|+.|+..+.
T Consensus 160 ---ee~~v~n~l~~liqnDpS~EVRRaaLsnI~ 189 (892)
T KOG2025|consen 160 ---EECPVVNLLKDLIQNDPSDEVRRAALSNIS 189 (892)
T ss_pred ---CcccHHHHHHHHHhcCCcHHHHHHHHHhhc
Confidence 022357788889998888899997765443
|
|
| >KOG1243|consensus | Back alignment and domain information |
|---|
Probab=87.10 E-value=4.7 Score=45.90 Aligned_cols=213 Identities=15% Similarity=0.154 Sum_probs=124.1
Q ss_pred HHHcCCC-hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHc
Q psy12605 52 EAARKDN-PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAA 130 (845)
Q Consensus 52 ~~l~~~~-~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~ 130 (845)
..+.-.+ .+...-.+..+.+.+...+ ...+++|.|+++++ ..+..+|..-+.-+-+... -..+.+++.
T Consensus 300 ~~~~~g~a~~~~ltpl~k~~k~ld~~e-------yq~~i~p~l~kLF~-~~Dr~iR~~LL~~i~~~i~---~Lt~~~~~d 368 (690)
T KOG1243|consen 300 AALEFGDAASDFLTPLFKLGKDLDEEE-------YQVRIIPVLLKLFK-SPDRQIRLLLLQYIEKYID---HLTKQILND 368 (690)
T ss_pred HHhhccccchhhhhHHHHhhhhccccc-------cccchhhhHHHHhc-CcchHHHHHHHHhHHHHhh---hcCHHhhcc
Confidence 4444333 3444444555555444332 45678999999994 6677788665555544432 245677888
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
.++|.+...+.+.++.+|++++.++..|+.-- -........+..+-++ +.+.+-.+|.+.+-||..+.....+..
T Consensus 369 ~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL---~~~~Ln~Ellr~~ar~-q~d~~~~irtntticlgki~~~l~~~~- 443 (690)
T KOG1243|consen 369 QIFPHVALGFLDTNATLREQTLKSMAVLAPKL---SKRNLNGELLRYLARL-QPDEHGGIRTNTTICLGKIAPHLAASV- 443 (690)
T ss_pred hhHHHHHhhcccCCHHHHHHHHHHHHHHHhhh---chhhhcHHHHHHHHhh-CccccCcccccceeeecccccccchhh-
Confidence 89999999999999999999999999887431 1111221122222222 223344566666555555554432211
Q ss_pred hhHHhhH-HHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 211 MSTIIEL-LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 211 ~~~~~~~-l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
..+. ...+.+.++++-.. .+..+.+.+.......+. .. +...+++.++
T Consensus 444 ---R~~vL~~aftralkdpf~p-------------------------aR~a~v~~l~at~~~~~~--~~-va~kIlp~l~ 492 (690)
T KOG1243|consen 444 ---RKRVLASAFTRALKDPFVP-------------------------ARKAGVLALAATQEYFDQ--SE-VANKILPSLV 492 (690)
T ss_pred ---hccccchhhhhhhcCCCCC-------------------------chhhhhHHHhhcccccch--hh-hhhhcccccc
Confidence 1222 22233334444333 445555555543332221 12 2557888999
Q ss_pred hhccCCchhhHHHHHHHHHHHh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIV 311 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~ 311 (845)
.+..+++..++..|-.++....
T Consensus 493 pl~vd~e~~vr~~a~~~i~~fl 514 (690)
T KOG1243|consen 493 PLTVDPEKTVRDTAEKAIRQFL 514 (690)
T ss_pred ccccCcccchhhHHHHHHHHHH
Confidence 9998888888888887777654
|
|
| >KOG1820|consensus | Back alignment and domain information |
|---|
Probab=87.01 E-value=7.7 Score=46.19 Aligned_cols=183 Identities=11% Similarity=0.100 Sum_probs=114.7
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhH
Q psy12605 134 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMST 213 (845)
Q Consensus 134 ~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 213 (845)
+.+-.-+.+++..-+..|+..+..+..+.. ........|.+-.++.....+.+..+...++.+|..++...... ....
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~-~~~~ 333 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPL-FRKY 333 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchh-hHHH
Confidence 334444455666778888888887774432 11111122344455555666767788888999999988866332 3334
Q ss_pred HhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc
Q psy12605 214 IIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 293 (845)
.....|.+..-+...... ++..+..++........ -....+.+..+++
T Consensus 334 ~~~v~p~lld~lkekk~~-------------------------l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk 381 (815)
T KOG1820|consen 334 AKNVFPSLLDRLKEKKSE-------------------------LRDALLKALDAILNSTP-------LSKMSEAILEALK 381 (815)
T ss_pred HHhhcchHHHHhhhccHH-------------------------HHHHHHHHHHHHHhccc-------HHHHHHHHHHHhc
Confidence 456666666666554444 44444444433322111 1234567788889
Q ss_pred CCchhhHHHHHHHHHHHhcCChh---hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDE---QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~---~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
+.++.++......+.......+. .+..+ .+.++.++....+.+.++|.+|..+++-+
T Consensus 382 ~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~--~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v 441 (815)
T KOG1820|consen 382 GKNPQIKGECLLLLDRKLRKLGPKTVEKETV--KTLVPHLIKHINDTDKDVRKAALEAVAAV 441 (815)
T ss_pred CCChhhHHHHHHHHHHHHhhcCCcCcchhhH--HHHhHHHhhhccCCcHHHHHHHHHHHHHH
Confidence 99999999888887777655442 22222 25778888888999999999999988876
|
|
| >PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus | Back alignment and domain information |
|---|
Probab=86.78 E-value=23 Score=34.29 Aligned_cols=120 Identities=15% Similarity=0.163 Sum_probs=77.6
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~ 120 (845)
+.++=++.++ +...+++.+.+..|+..+...+..+=-.+.+ .+|.||.+. .++++.++..|...+..+....
T Consensus 5 l~Qryl~~Il-~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~------cvp~lIAL~-ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 5 LVQRYLKNIL-ELCLSSDDSVRLAALQVLELILRQGLVNPKQ------CVPTLIALE-TSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHhcCCCChHH------HHhHhhhhh-CCCChHHHHHHHHHHHHHHHHh
Confidence 3455677888 7889999999999999999888765322333 599999998 6789999999999999998655
Q ss_pred hhhHHHHHHcCChHHHHHhh---CCC-ChhH---HHHHHHHHHHhcCCChhhHHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLL---MSP-HSNV---CEQAVWALGNIIGDGPQLRDYV 169 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL---~s~-~~~v---~~~a~~~L~nla~~~~~~r~~i 169 (845)
+.....-... |+..-.++- ..+ .... ....+..|..+...+...|..+
T Consensus 77 ~s~v~~~~~~-gi~~af~~~~~l~~~~~~~~~~~~~~~l~~ly~ll~~~r~~R~~F 131 (187)
T PF12830_consen 77 ESLVESRYSE-GIRLAFDYQRRLSSDSRGARRGPPSAFLSRLYSLLRSNRKSRRKF 131 (187)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHhcCCccccccccchHHHHHHHHHHhcccHhHHHH
Confidence 4443332222 233332222 111 1111 4455555666665555566654
|
|
| >PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits [] | Back alignment and domain information |
|---|
Probab=86.63 E-value=49 Score=35.41 Aligned_cols=164 Identities=16% Similarity=0.193 Sum_probs=111.5
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhc-C-CHHHHHHhhccC---CC---------hhHHH
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-G-ILPVLVECLERS---DR---------PNLQF 107 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~-g-~i~~Lv~lL~~~---~~---------~~i~~ 107 (845)
.+..+..+. +.|++..+..+..+++-|..+++........++... + -.+.+-+++... .. +.+|.
T Consensus 54 L~~~~k~ly-r~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~ 132 (330)
T PF11707_consen 54 LQNHLKLLY-RSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRT 132 (330)
T ss_pred HHHHHHHHH-HHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHH
Confidence 333455555 788888888888999999999885544455665543 2 234555555321 11 27888
Q ss_pred HHHHHHHH-HhcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHH-hcCCC---hhhHHHHHhcCChhhHHhh
Q psy12605 108 EAAWALTN-IASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGN-IIGDG---PQLRDYVINMGVVPPLLSF 181 (845)
Q Consensus 108 ~a~~~L~~-la~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~n-la~~~---~~~r~~i~~~g~i~~Lv~l 181 (845)
.....+.. +..+++..+..+.+ .+.+..+.+-|..++.++....+.+|.. +..+. ...+-.+.....+..|..+
T Consensus 133 ~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~L 212 (330)
T PF11707_consen 133 NFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASL 212 (330)
T ss_pred HHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHH
Confidence 77775554 55566777776665 6789999999999999999999999984 54443 2344555666677888886
Q ss_pred hcCCCC---HHHHHHHHHHHHHhhcCCC
Q psy12605 182 IKPDIP---ISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 182 l~~~~~---~~~~~~a~~~L~~l~~~~~ 206 (845)
.....+ ..+...+-..|..+|.+..
T Consensus 213 y~~~~~~~~~~~~~~vh~fL~~lcT~p~ 240 (330)
T PF11707_consen 213 YSRDGEDEKSSVADLVHEFLLALCTDPK 240 (330)
T ss_pred hcccCCcccchHHHHHHHHHHHHhcCCC
Confidence 655432 3678888888888887553
|
The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length. |
| >KOG2611|consensus | Back alignment and domain information |
|---|
Probab=86.44 E-value=44 Score=36.52 Aligned_cols=197 Identities=15% Similarity=0.152 Sum_probs=116.0
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCC---hhhHHHHHhcCChhhHHhhhcC------CCCHHHHHHHHHHHHHhhcCCC
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDG---PQLRDYVINMGVVPPLLSFIKP------DIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~---~~~r~~i~~~g~i~~Lv~ll~~------~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
+..+++..+.+-+-+|+-....++... ..+|+.++++=+++.+-+++.. +.+.-.+..++.+|..+|+.++
T Consensus 16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pE 95 (698)
T KOG2611|consen 16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPE 95 (698)
T ss_pred HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChh
Confidence 556666666666777777777777554 2467778888778877777743 2234455667888999999774
Q ss_pred CCCChhHHhhHHHHHHhhccc-CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 207 PPPSMSTIIELLPALNILIHH-HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
-. ....+-..+|.|...+.. .|++. +.| .-+..++..+|..++.+.... ..++..|.+
T Consensus 96 lA-sh~~~v~~IP~llev~~~~~d~d~---------e~~----------~~m~~d~Y~cL~~Va~~e~G~-~~Lia~G~~ 154 (698)
T KOG2611|consen 96 LA-SHEEMVSRIPLLLEVMSKGIDTDY---------EDN----------LIMLEDCYECLYLVATAEAGL-MTLIASGGL 154 (698)
T ss_pred hc-cCHHHHHhhhHHHHHHHhcCCCch---------hhh----------HHHHHHHHHHHHHHhcCCchh-HHHHhcCch
Confidence 32 223456778888887764 23330 111 118889999999998886654 445588999
Q ss_pred hhHHhhccCCchh-hHHHHHHHHHHHhcCChhhH---HHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC
Q psy12605 286 PSLIPLLSHKEVK-VQTASLRAVGNIVTGTDEQT---QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG 355 (845)
Q Consensus 286 ~~Lv~lL~~~~~~-v~~~al~~L~nl~~~~~~~~---~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~ 355 (845)
+.+.++-.-++-. -..-|+..+.-...+-+-.. ..+. ..+..+..=+...+...+-+.|..|..+...
T Consensus 155 ~~~~Q~y~~~~~~~d~alal~Vlll~~~~~~cw~e~~~~fl--ali~~va~df~~~~~a~KfElc~lL~~vl~~ 226 (698)
T KOG2611|consen 155 RVIAQMYELPDGSHDMALALKVLLLLVSKLDCWSETIERFL--ALIAAVARDFAVLHNALKFELCHLLSAVLSS 226 (698)
T ss_pred HHHHHHHhCCCCchhHHHHHHHHHHHHHhcccCcCCHHHHH--HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhC
Confidence 9988766433322 22233333333332211111 1111 1122233333344667788888888865443
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.41 E-value=12 Score=36.36 Aligned_cols=101 Identities=9% Similarity=0.113 Sum_probs=73.1
Q ss_pred hhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc-----CCchhhHHHHHHHHHHhhcCCh-HHHHHHHhcCChHH
Q psy12605 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT-----HPKEKICKEAVWFLSNITAGNQ-AQVQAVIDAGLLPK 371 (845)
Q Consensus 298 ~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~-----~~~~~~~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~ 371 (845)
.-...|+..|.-++++ ++.+..+.++.+--.+...|. ++-+-+|-.++++++.+..++. ..++.+...+++|.
T Consensus 115 nRvcnaL~lLQclaSh-Petk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPL 193 (315)
T COG5209 115 NRVCNALNLLQCLASH-PETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPL 193 (315)
T ss_pred hHHHHHHHHHHHHhcC-cchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHH
Confidence 3455677777777665 566777777765444555552 2346789999999999887654 56677788999999
Q ss_pred HHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 372 IIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 372 Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
+++.+..+ +.-.+.-|+.++..+..++.
T Consensus 194 cLrIme~g-----SElSktvaifI~qkil~dDv 221 (315)
T COG5209 194 CLRIMELG-----SELSKTVAIFIFQKILGDDV 221 (315)
T ss_pred HHHHHHhh-----hHHHHHHHHHHHHHHhccch
Confidence 99999885 56677788888888776553
|
|
| >KOG2032|consensus | Back alignment and domain information |
|---|
Probab=86.16 E-value=59 Score=35.85 Aligned_cols=116 Identities=22% Similarity=0.171 Sum_probs=75.5
Q ss_pred cCCccchhhHhh----cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 323 NCDALSHFPALL----THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 323 ~~~~l~~L~~lL----~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
+.|.+..++..+ .+++..+|.-|+..|.|.+.+.++.+.... .-.+..++.-|.+. .+.+|+.++..+|..
T Consensus 252 ~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~-~~~ldaii~gL~D~----~~~~V~leam~~Lt~ 326 (533)
T KOG2032|consen 252 KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHK-TTQLDAIIRGLYDD----LNEEVQLEAMKCLTM 326 (533)
T ss_pred ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhH-HHHHHHHHHHHhcC----CccHHHHHHHHHHHH
Confidence 345555555544 556788999999999999888555433322 23456666666665 478999999999888
Q ss_pred HhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 399 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 399 l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+...-....-...-..+.-.+-.+..+.++++|.++...++.++.
T Consensus 327 v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~ 371 (533)
T KOG2032|consen 327 VLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAK 371 (533)
T ss_pred HHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHH
Confidence 764221111111111223336677889999999999998888874
|
|
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=86.12 E-value=2.8 Score=35.14 Aligned_cols=84 Identities=17% Similarity=0.235 Sum_probs=61.5
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+...+ ..++++.+.+|-.++..|++++.... ....-..+++..+...| .++++-+-..|...|..++...++
T Consensus 4 ~~~~al-~~L~dp~~PvRa~gL~~L~~Li~~~~---~~~~~~~~il~l~l~~L-~d~DsyVYL~aI~~L~~La~~~p~-- 76 (92)
T PF10363_consen 4 TLQEAL-SDLNDPLPPVRAHGLVLLRKLIESKS---EPVIDIPKILDLFLSQL-KDEDSYVYLNAIKGLAALADRHPD-- 76 (92)
T ss_pred HHHHHH-HHccCCCcchHHHHHHHHHHHHHcCC---cchhhHHHHHHHHHHHc-CCCCchHHHHHHHHHHHHHHHChH--
Confidence 355667 78899999999999999999998664 11122346788888888 467788999999999999975443
Q ss_pred HHHHHcCChHHHHHhhC
Q psy12605 125 QEVVAAGAVPLFLRLLM 141 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~ 141 (845)
.+++.|++...
T Consensus 77 ------~vl~~L~~~y~ 87 (92)
T PF10363_consen 77 ------EVLPILLDEYA 87 (92)
T ss_pred ------HHHHHHHHHHh
Confidence 24555555443
|
|
| >PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division [] | Back alignment and domain information |
|---|
Probab=86.06 E-value=2.1 Score=41.55 Aligned_cols=82 Identities=18% Similarity=0.270 Sum_probs=60.3
Q ss_pred ChhhHHHHHhcCchhhHHhhccC---------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhH
Q psy12605 272 GNDQIQMVIDSGVVPSLIPLLSH---------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKIC 342 (845)
Q Consensus 272 ~~~~~~~~~~~g~i~~Lv~lL~~---------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~ 342 (845)
+..-++.|++.|++..|+..|.. .+......+++||..+..........+...+++..|...|.+++..+|
T Consensus 96 ~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r 175 (187)
T PF06371_consen 96 PISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTR 175 (187)
T ss_dssp -HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHH
T ss_pred CchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHH
Confidence 33456677788999999888832 344688899999999976544444444456899999999999999999
Q ss_pred HHHHHHHHHhh
Q psy12605 343 KEAVWFLSNIT 353 (845)
Q Consensus 343 ~~a~~~L~nl~ 353 (845)
..++..|..+|
T Consensus 176 ~~~leiL~~lc 186 (187)
T PF06371_consen 176 KLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998775
|
Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A. |
| >KOG4464|consensus | Back alignment and domain information |
|---|
Probab=85.97 E-value=53 Score=35.20 Aligned_cols=88 Identities=11% Similarity=0.048 Sum_probs=62.7
Q ss_pred chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH-HHHHHcCCh
Q psy12605 338 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT-QEVVAAGAV 416 (845)
Q Consensus 338 ~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~-~~l~~~g~i 416 (845)
+..+..++..||+|+..+++...+...+......+.+.+..........+++..-...|.-+..-....+ +.+.+.+|+
T Consensus 110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl 189 (532)
T KOG4464|consen 110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGL 189 (532)
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhccc
Confidence 4578899999999999999999888888888888877776543211233455555555555554444444 455677999
Q ss_pred HHHHHhhCC
Q psy12605 417 PLFLRLLMS 425 (845)
Q Consensus 417 ~~Lv~lL~~ 425 (845)
+.+-+++++
T Consensus 190 ~~lt~~led 198 (532)
T KOG4464|consen 190 ELLTNWLED 198 (532)
T ss_pred HHHHHHhhc
Confidence 999999875
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=85.55 E-value=6 Score=38.36 Aligned_cols=93 Identities=18% Similarity=0.247 Sum_probs=64.9
Q ss_pred ChHHHHHhhCC------CChhHHHHHHHHHHHhcCCChhhHHHHHhc--CC--hhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 132 AVPLFLRLLMS------PHSNVCEQAVWALGNIIGDGPQLRDYVINM--GV--VPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 132 ~i~~L~~lL~s------~~~~v~~~a~~~L~nla~~~~~~r~~i~~~--g~--i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
.+..|+.++.. ...+-....+.++.|++. .++.|+.+.+. +. +..|+.+..+. +.--|.-++++|.|+
T Consensus 53 ~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNc 130 (192)
T PF04063_consen 53 YLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNC 130 (192)
T ss_pred HHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHh
Confidence 56777777655 234557789999999995 47899999855 34 67778887777 545666789999999
Q ss_pred hcCCCCCCChhHH--hhHHHHHHhhcc
Q psy12605 202 CRNKDPPPSMSTI--IELLPALNILIH 226 (845)
Q Consensus 202 ~~~~~~~~~~~~~--~~~l~~L~~ll~ 226 (845)
|-..+........ ..++|.|.--+.
T Consensus 131 cFd~~~H~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 131 CFDTDSHEWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred hccHhHHHHhcCchhhhhHHHHHhhcc
Confidence 9887544333222 366666655544
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >smart00638 LPD_N Lipoprotein N-terminal Domain | Back alignment and domain information |
|---|
Probab=85.35 E-value=17 Score=42.37 Aligned_cols=95 Identities=17% Similarity=0.188 Sum_probs=61.1
Q ss_pred CchhhHHhhc----cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc---CCchhhHHHHHHHHHHhhcC
Q psy12605 283 GVVPSLIPLL----SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT---HPKEKICKEAVWFLSNITAG 355 (845)
Q Consensus 283 g~i~~Lv~lL----~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~---~~~~~~~~~a~~~L~nl~~~ 355 (845)
.+++.+...| ...+..-+...+++|||+-... .++.+...+. ..+..+|..|+++|..++..
T Consensus 442 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g~~~-----------~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~ 510 (574)
T smart00638 442 ELLKYLHELLQQAVSKGDEEEIQLYLKALGNAGHPS-----------SIKVLEPYLEGAEPLSTFIRLAAILALRNLAKR 510 (574)
T ss_pred HHHHHHHHHHHHHHhcCCchheeeHHHhhhccCChh-----------HHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHh
Confidence 3455555555 2345566788899999984321 2233444443 23568999999999988654
Q ss_pred ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 356 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
.+.. +-+.++.++.+.. .++++|..|..+|...
T Consensus 511 ~p~~--------v~~~l~~i~~n~~---e~~EvRiaA~~~lm~t 543 (574)
T smart00638 511 DPRK--------VQEVLLPIYLNRA---EPPEVRMAAVLVLMET 543 (574)
T ss_pred CchH--------HHHHHHHHHcCCC---CChHHHHHHHHHHHhc
Confidence 4443 3456677776654 5788998888776653
|
|
| >COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only] | Back alignment and domain information |
|---|
Probab=85.31 E-value=4.8 Score=38.95 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=91.9
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC-hHhHHHHHHcCChHHHHHh
Q psy12605 344 EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT-SAQTQEVVAAGAVPLFLRL 422 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~i~~Lv~l 422 (845)
.|+..|..+ ++.++.+..++++.+---+..+|...+.+..-.-++..+.+.++.+..++ ++..+.+.....+|..++.
T Consensus 119 naL~lLQcl-aShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcLrI 197 (315)
T COG5209 119 NALNLLQCL-ASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCLRI 197 (315)
T ss_pred HHHHHHHHH-hcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHHHH
Confidence 344444444 55566666677776655566666554333234568888999999999855 4566777788999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC-------CChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 423 LMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM-------GVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 423 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-------g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
++.+++--+.-++..+..+..+.....-..... .++..++.-+-+..+..+.+++..+.-.+|.
T Consensus 198 me~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd 268 (315)
T COG5209 198 MELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD 268 (315)
T ss_pred HHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC
Confidence 999999888899999999988765443322211 1233333333344445566666666555553
|
|
| >PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function | Back alignment and domain information |
|---|
Probab=84.91 E-value=6.7 Score=38.04 Aligned_cols=119 Identities=13% Similarity=0.117 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHhhcCChhhHHHH---------------HhcCchhhHHhhccC------CchhhHHHHHHHHHHHhcCCh
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMV---------------IDSGVVPSLIPLLSH------KEVKVQTASLRAVGNIVTGTD 315 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~---------------~~~g~i~~Lv~lL~~------~~~~v~~~al~~L~nl~~~~~ 315 (845)
....++..|+|++..+......+ .+...+..|+.++.. ....-.......+.|+++. +
T Consensus 11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~-~ 89 (192)
T PF04063_consen 11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL-P 89 (192)
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC-H
Confidence 44556777777776544322111 122356667777643 2344566778899999766 5
Q ss_pred hhHHHHhcC--Cc--cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh---cCChHHHHHHhh
Q psy12605 316 EQTQVILNC--DA--LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID---AGLLPKIIANLQ 377 (845)
Q Consensus 316 ~~~~~i~~~--~~--l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~---~~~i~~Lv~lL~ 377 (845)
..|+.+.+. +. +..|+.++.+.+..-|..++.++.|+|...... ..+.. .+++|.|+--|.
T Consensus 90 ~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa 157 (192)
T PF04063_consen 90 EGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA 157 (192)
T ss_pred HHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence 667777755 23 667777778887777788899999998876665 55544 356666655554
|
It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO). |
| >KOG2137|consensus | Back alignment and domain information |
|---|
Probab=84.70 E-value=9.3 Score=43.83 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=65.5
Q ss_pred HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCC
Q psy12605 129 AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 208 (845)
Q Consensus 129 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 208 (845)
...++|.|..-+++.+..+|+.++..+...+..-+ -..+..-++|.+-.+.-..+...++.+++.|+..+.+.-
T Consensus 387 ~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~l--- 460 (700)
T KOG2137|consen 387 KEKILPLLYRSLEDSDVQIQELALQILPTVAESID---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRL--- 460 (700)
T ss_pred HHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhcc---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHH---
Confidence 34578888888899999999999999999884322 223444567888877666667889999999999888422
Q ss_pred CChhHHhhHHHHHHhhcccCCch
Q psy12605 209 PSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 209 ~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
+....-..+..+.+-.+..++.
T Consensus 461 -D~~~v~d~~lpi~~~~~~~dp~ 482 (700)
T KOG2137|consen 461 -DKAAVLDELLPILKCIKTRDPA 482 (700)
T ss_pred -HHHHhHHHHHHHHHHhcCCCcH
Confidence 1122333444444555556666
|
|
| >KOG2032|consensus | Back alignment and domain information |
|---|
Probab=84.60 E-value=48 Score=36.49 Aligned_cols=90 Identities=12% Similarity=0.113 Sum_probs=56.1
Q ss_pred CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHH
Q psy12605 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPA 220 (845)
Q Consensus 141 ~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~ 220 (845)
.+++..++.-|+++|+|.+...|+-...-.. -.+..++.-|-++.+.++.-.++.+|..+........-....-++.-.
T Consensus 268 ~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialr 346 (533)
T KOG2032|consen 268 TDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALR 346 (533)
T ss_pred cCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHH
Confidence 4567789999999999999875543222211 134455555555555788888998888877654332222222334444
Q ss_pred HHhhcccCCch
Q psy12605 221 LNILIHHHDTS 231 (845)
Q Consensus 221 L~~ll~~~~~~ 231 (845)
+..+..+++++
T Consensus 347 lR~l~~se~~~ 357 (533)
T KOG2032|consen 347 LRTLFDSEDDK 357 (533)
T ss_pred HHHHHHhcChh
Confidence 55667777777
|
|
| >KOG2999|consensus | Back alignment and domain information |
|---|
Probab=84.54 E-value=12 Score=41.50 Aligned_cols=155 Identities=10% Similarity=0.184 Sum_probs=110.0
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc----hhhHHHHHHHHHHhhcCChHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK----EKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
...+.+.+.+++...+..|+..+..++.+ ......++...++..|.+++.+++ .++...++.+++.+..+..-..
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW 163 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW 163 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence 35667777788877787899999988765 566788999999999999997754 3555666666666543322110
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
+ .+...++.....+..... .+..+-..|...|.++..++......+.+.--+..|+..++..+..+...|+..+-.
T Consensus 164 ~-~~~~~fV~~~a~~V~~~~---~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~na 239 (713)
T KOG2999|consen 164 E-SVSNDFVVSMASYVNAKR---EDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNA 239 (713)
T ss_pred e-ecccHHHHHHHHHHhhhh---hcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHH
Confidence 0 112234444444443221 355677788889999998888888888888899999999999999999888777776
Q ss_pred hhcC
Q psy12605 441 IIGD 444 (845)
Q Consensus 441 l~~~ 444 (845)
+...
T Consensus 240 l~~~ 243 (713)
T KOG2999|consen 240 LFRK 243 (713)
T ss_pred HHhh
Confidence 6543
|
|
| >PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal | Back alignment and domain information |
|---|
Probab=84.45 E-value=52 Score=33.76 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=47.3
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
...+..++.+|..+.+.++..++..|..+...-+..+. .....+.++.+++.++. -.+|+.+|-++
T Consensus 187 ~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~--~~~dlispllrlL~t~~---~~eAL~VLd~~ 252 (262)
T PF14225_consen 187 FQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSP--HGADLISPLLRLLQTDL---WMEALEVLDEI 252 (262)
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCC--cchHHHHHHHHHhCCcc---HHHHHHHHHHH
Confidence 34567789999888899999999999999876544322 44457888888887543 34555555544
|
|
| >PF13251 DUF4042: Domain of unknown function (DUF4042) | Back alignment and domain information |
|---|
Probab=83.95 E-value=8.4 Score=36.92 Aligned_cols=97 Identities=20% Similarity=0.198 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcC-------------------chhhHHhhcc-CCchhhHHHHHHHHHHHhcCChh
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSG-------------------VVPSLIPLLS-HKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g-------------------~i~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
++..|+.++..|-++.........+.. +-..|+..|. ..+..+....++++..++...+.
T Consensus 56 vR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY 135 (182)
T PF13251_consen 56 VRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPY 135 (182)
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCCh
Confidence 777888888877666544333322111 1233444553 44677888999999999987765
Q ss_pred hHHHHhcCCccc----hhhHhhcCCchhhHHHHHHHHHHhhcCC
Q psy12605 317 QTQVILNCDALS----HFPALLTHPKEKICKEAVWFLSNITAGN 356 (845)
Q Consensus 317 ~~~~i~~~~~l~----~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 356 (845)
.+- +.|.++ .+..++.+.|.+++..++.++..+....
T Consensus 136 ~rL---~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s~~ 176 (182)
T PF13251_consen 136 HRL---PPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLSVQ 176 (182)
T ss_pred hhc---CHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 432 234444 4445567889999999999998875543
|
|
| >COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=83.54 E-value=31 Score=39.43 Aligned_cols=158 Identities=17% Similarity=0.137 Sum_probs=105.0
Q ss_pred HHHcCCChHHHHHHHHHHHH--HHcCCCCccHHHHHhcCCHHHHHHhhccC---CChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 52 EAARKDNPELQLLAVQSARK--LLSSDKNPPIEALIHSGILPVLVECLERS---DRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~--ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~---~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
.++.+..++....|...++. ++..+ + -+-+..-|...+....+ +++.++..|..+|..+-+-+.+...
T Consensus 860 ~~IggtsEddf~da~~fikE~ElLyGe-k-----svLs~F~pvVeE~csn~~~~sd~~lq~aA~l~L~klMClS~~fc~- 932 (1128)
T COG5098 860 SRIGGTSEDDFVDAFFFIKEKELLYGE-K-----SVLSNFKPVVEEGCSNSSRFSDEELQVAAYLSLYKLMCLSFEFCS- 932 (1128)
T ss_pred hhccCCCHHHHHHHHHHHHHHHHhhch-h-----HHHhhhhHHHHHHhccccccCCHHHHHHHHHHHHHHHHHhHHHHH-
Confidence 56677777777777666653 23222 1 12233455555555322 6889999999999988765444332
Q ss_pred HHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 127 VVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 127 i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
.-.|.|+..+. +|+|.+|.+|+-.||.+.---....+. .-..|.+-|... +..+++.+..++..+....
T Consensus 933 ----ehlpllIt~mek~p~P~IR~NaVvglgD~~vcfN~~~de-----~t~yLyrrL~De-~~~V~rtclmti~fLilag 1002 (1128)
T COG5098 933 ----EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCFNTTADE-----HTHYLYRRLGDE-DADVRRTCLMTIHFLILAG 1002 (1128)
T ss_pred ----HHHHHHHHHHhhCCCcceeccceeeccccceehhhhhHH-----HHHHHHHHhcch-hhHHHHHHHHHHHHHHHcc
Confidence 36889999887 899999999999998775321111111 123444445444 5589999999999987654
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
. ....|-++.++.++.++|..
T Consensus 1003 q-----~KVKGqlg~ma~~L~deda~ 1023 (1128)
T COG5098 1003 Q-----LKVKGQLGKMALLLTDEDAE 1023 (1128)
T ss_pred c-----eeeccchhhhHhhccCCcch
Confidence 2 23568889999999999988
|
|
| >PRK09169 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=82.61 E-value=1.8e+02 Score=38.73 Aligned_cols=109 Identities=22% Similarity=0.146 Sum_probs=50.3
Q ss_pred CHHHHHHhhc-cCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhh-CCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 89 ILPVLVECLE-RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL-MSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 89 ~i~~Lv~lL~-~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL-~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
-+..++.-|+ ..++ .....++..|......++.....+-.. .+..++.-| +-++......+...|..-..+.+..+
T Consensus 164 ~v~~lLNalSKWP~~-~~c~~aa~~lA~~la~~~~l~~al~~q-~va~~lnalSKwp~~~~cr~a~~~lA~rL~~~~~l~ 241 (2316)
T PRK09169 164 SFALLLNALSKWPDN-TDCQTAAEQLADRLASDSRLLQAMDAQ-EVANALNALSKWPDSPRCRNAAERLAERLADEPGLL 241 (2316)
T ss_pred HHHHHHHHhccCCCc-hHHHHHHHHHHHHhccCHHHHHhcchH-HHHHHHHHHhcCCCcHHHHHHHHHHHHHHhcChHHH
Confidence 3555555552 2333 344555566665555556666554433 333444444 34555556666666655544444443
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHH
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 200 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 200 (845)
..+-.. .+..+++.+++=......+.++..|..
T Consensus 242 ~~l~~q-~va~~LNAlSKWp~~~~c~~aa~~lA~ 274 (2316)
T PRK09169 242 QSLRAQ-EVALLLNALSKWPDDEACRQAAEALAA 274 (2316)
T ss_pred HhcCHH-HHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 322211 233444444432222333444444433
|
|
| >KOG2025|consensus | Back alignment and domain information |
|---|
Probab=82.09 E-value=57 Score=37.61 Aligned_cols=129 Identities=13% Similarity=0.093 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
+..-++..+.++-..+.+. -+ -++.+..++....+++..|+-..+..|.-+.-.....-..+. .+....+..-+.+
T Consensus 62 Il~fla~fv~sl~q~d~e~--Dl-V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~D 137 (892)
T KOG2025|consen 62 ILSFLARFVESLPQLDKEE--DL-VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKD 137 (892)
T ss_pred HHHHHHHHHHhhhccCchh--hH-HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhc
Confidence 4444555555555444331 12 346677777777888999999999999988753322212222 2445556666677
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
..+.+|.+|+.+|+.+-....+. +..+...+..++++. .+++||+.|...+..
T Consensus 138 rep~VRiqAv~aLsrlQ~d~~de-----e~~v~n~l~~liqnD----pS~EVRRaaLsnI~v 190 (892)
T KOG2025|consen 138 REPNVRIQAVLALSRLQGDPKDE-----ECPVVNLLKDLIQND----PSDEVRRAALSNISV 190 (892)
T ss_pred cCchHHHHHHHHHHHHhcCCCCC-----cccHHHHHHHHHhcC----CcHHHHHHHHHhhcc
Confidence 88999999999999984222111 234667778888876 589999988765544
|
|
| >PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism | Back alignment and domain information |
|---|
Probab=82.05 E-value=29 Score=38.42 Aligned_cols=257 Identities=14% Similarity=0.088 Sum_probs=130.7
Q ss_pred HHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCC-C
Q psy12605 65 AVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-P 143 (845)
Q Consensus 65 a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s-~ 143 (845)
....|.+++...........+....+..|+.++ .+.+++.|.....+|..+-......+..+.. .....+.+.+.. .
T Consensus 110 vY~il~~~i~~~~~~~~~~~i~~~fi~~Ll~l~-~S~D~rER~~lk~~l~~iy~k~~~~r~~Ir~-~i~~~~~~fi~e~~ 187 (409)
T PF01603_consen 110 VYEILLRFIESPPFDPAKKYIDQKFIKKLLELF-DSPDPRERDYLKTILHRIYGKFPNLRSFIRK-SINNIFYRFIYETE 187 (409)
T ss_dssp HHHHHHHHHTSTT--CCTTTS-HHHHHHHHHTT-TSSTHHHHHHHHHHHHHHHHH-TTTHHHHHH-HHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCccccHHHHHcCHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHHHHhhhhHHHHHH-HHHHHHHHHhcCcc
Confidence 344444554443222222345556788999999 5788999999999999987654555555543 355566666654 3
Q ss_pred ChhHHHHHHHHHHHhcCCCh-hhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHH
Q psy12605 144 HSNVCEQAVWALGNIIGDGP-QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALN 222 (845)
Q Consensus 144 ~~~v~~~a~~~L~nla~~~~-~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~ 222 (845)
...-...++..++.+...-. ..++....- ....++.+...+.-......-..++..++..+. ......+..++
T Consensus 188 ~~~gI~elLeil~sii~gf~~plk~eh~~f-l~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp-----~l~~~~i~~ll 261 (409)
T PF01603_consen 188 RHNGIAELLEILGSIINGFAVPLKEEHKQF-LRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDP-----SLAEPVIKGLL 261 (409)
T ss_dssp --STHHHHHHHHHHHHTT--SS--HHHHHH-HHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-G-----GGHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHhccCCCCcHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-----hhHHHHHHHHH
Confidence 45567778888998875421 122211100 122344444444332344455555555554331 11122222222
Q ss_pred hhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhHHhhccCCchhhHH
Q psy12605 223 ILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSLIPLLSHKEVKVQT 301 (845)
Q Consensus 223 ~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~ 301 (845)
+.-=..++. . ....+.-+..+... +++....+ ...++..+...+.+++..|.+
T Consensus 262 k~WP~t~s~---------------K----------ev~FL~el~~il~~~~~~~f~~i-~~~lf~~la~ci~S~h~qVAE 315 (409)
T PF01603_consen 262 KHWPKTNSQ---------------K----------EVLFLNELEEILEVLPPEEFQKI-MVPLFKRLAKCISSPHFQVAE 315 (409)
T ss_dssp HHS-SS-HH---------------H----------HHHHHHHHHHHHTT--HHHHHHH-HHHHHHHHHHHHTSSSHHHHH
T ss_pred HhCCCCCch---------------h----------HHHHHHHHHHHHHhcCHHHHHHH-HHHHHHHHHHHhCCCCHHHHH
Confidence 222122222 1 11111222222221 12222222 334567777788899999999
Q ss_pred HHHHHHHHHhcCChhhHHHHhcC--CccchhhHhhcC-----CchhhHHHHHHHHHHhhcCChHHH
Q psy12605 302 ASLRAVGNIVTGTDEQTQVILNC--DALSHFPALLTH-----PKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 302 ~al~~L~nl~~~~~~~~~~i~~~--~~l~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
.|+..+.|= .....+.+. .++|.+...+.. =+..++..|..++.-+..-+++..
T Consensus 316 rAl~~w~n~-----~~~~li~~~~~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~~d~~lf 376 (409)
T PF01603_consen 316 RALYFWNNE-----YFLSLISQNSRVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILMEMDPKLF 376 (409)
T ss_dssp HHHGGGGSH-----HHHHHHHCTHHHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHTTSHHHH
T ss_pred HHHHHHCCH-----HHHHHHHhChHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCHHHH
Confidence 998776643 222222222 255666666633 257889888888888766555543
|
The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A. |
| >PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region [] | Back alignment and domain information |
|---|
Probab=81.81 E-value=61 Score=34.20 Aligned_cols=147 Identities=14% Similarity=0.147 Sum_probs=93.9
Q ss_pred chhhHHHHHHHHHHHhcCChhhHHHHhcC-----------CccchhhHhhc------CCchhhHHHHHHHHHHhhcCChH
Q psy12605 296 EVKVQTASLRAVGNIVTGTDEQTQVILNC-----------DALSHFPALLT------HPKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 296 ~~~v~~~al~~L~nl~~~~~~~~~~i~~~-----------~~l~~L~~lL~------~~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
.-++|.+|+.|+.....++++.+..+++. .....|...|- +.|+---.-|+.+|..+..+++.
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~q~~~l~~~i~~~~~~~~~~~~~nl~~~Ll~~~~~~~~dpy~~wfAa~il~hll~dn~~ 130 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEGQTAFLSTLIPSYASGNSDDPIANLLTALLDYDSDLSLDPYRCWFAAVILMHLLRDNPE 130 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHHHHHHHHTTSSTT--SS--SSSS-HHHHHT------SS-HHHHHHHHHHHHHHHTT-HH
T ss_pred chHHHHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCcccchhhHHHHHHHHhhccccCCHHHHHHHHHHHHHHHhcCHH
Confidence 56799999999999999998887766643 11223455443 22333345688889999888888
Q ss_pred HHHHHHhc--C----------ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcC-ChHHHHHhhCC
Q psy12605 359 QVQAVIDA--G----------LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG-AVPLFLRLLMS 425 (845)
Q Consensus 359 ~~~~l~~~--~----------~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g-~i~~Lv~lL~~ 425 (845)
.++.+.+- + .+..+..+|...-....++.++..-...|+-...+++.....+...+ .++.|+.....
T Consensus 131 ~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~~s~l~~Li~~~~~ 210 (312)
T PF04869_consen 131 AKEQALRVTEGDESSGEEPVTLIQTVSELLIASLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSEGSNLQSLIEFSNQ 210 (312)
T ss_dssp HHHHHTT--EE--STTS--EEHHHHHHHHTTT----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCSTTHHHHHHHHHS-
T ss_pred HHHHHHcccCCCCCCCCCcccHHHHHHHHHHhhhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcCcchHHHHHHHhhc
Confidence 87766332 1 35566666655221115788888889999999999999999888875 68889987542
Q ss_pred ---CCHHHHHHHHHHHHHhh
Q psy12605 426 ---PHSNVCEQAVWALGNII 442 (845)
Q Consensus 426 ---~~~~v~~~a~~~L~nl~ 442 (845)
.+.-|+.-++..||-.-
T Consensus 211 ~~~~~~~VqGL~A~LLGicy 230 (312)
T PF04869_consen 211 SSSEDVLVQGLCAFLLGICY 230 (312)
T ss_dssp -TCCCHHHHHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHHHH
Confidence 34456666666665543
|
p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A. |
| >KOG2999|consensus | Back alignment and domain information |
|---|
Probab=81.39 E-value=47 Score=37.00 Aligned_cols=163 Identities=15% Similarity=0.199 Sum_probs=104.7
Q ss_pred hHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCC---HHHHHHHHHHHHHhhcCCCCCC
Q psy12605 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP---ISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 133 i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~---~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
...+...+.+++..-+..++..|..++.+ +.+...++...++..|..++.+... .++....+.+++.+-...- .
T Consensus 85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d-~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgv--v 161 (713)
T KOG2999|consen 85 AKRIMEILTEGNNISKMEALKELDSLSLD-PTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGV--V 161 (713)
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHhhcccc-HHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhce--e
Confidence 34456778888877777799999999965 5677778888889999999876643 3444444555555444331 1
Q ss_pred ChhH-HhhHHHHHHhhc--ccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchh
Q psy12605 210 SMST-IIELLPALNILI--HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVP 286 (845)
Q Consensus 210 ~~~~-~~~~l~~L~~ll--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 286 (845)
.+.. ....+.....+. +..+.. +...|+..|-.+.-.+......+.+.--++
T Consensus 162 sW~~~~~~fV~~~a~~V~~~~~~a~-------------------------~~~~AL~~LE~~vl~s~~~~~~v~eev~i~ 216 (713)
T KOG2999|consen 162 SWESVSNDFVVSMASYVNAKREDAN-------------------------TLLAALQMLESLVLGSDTLRQLVAEEVPIE 216 (713)
T ss_pred eeeecccHHHHHHHHHHhhhhhccc-------------------------chHHHHHHHHHHHhCChHHHHHHHhcCcHH
Confidence 1100 011111111111 112222 556677777777766666667777888899
Q ss_pred hHHhhccCCchhhHHHHHHHHHHHhcCC-hhhHHHHhc
Q psy12605 287 SLIPLLSHKEVKVQTASLRAVGNIVTGT-DEQTQVILN 323 (845)
Q Consensus 287 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~-~~~~~~i~~ 323 (845)
.|+..+...+..++..|+..+..+.... +..+..+.+
T Consensus 217 ~li~hlq~~n~~i~~~aial~nal~~~a~~~~R~~~~~ 254 (713)
T KOG2999|consen 217 TLIRHLQVSNQRIQTCAIALLNALFRKAPDDKRFEMAK 254 (713)
T ss_pred HHHHHHHhcchHHHHHHHHHHHHHHhhCChHHHHHHHH
Confidence 9999999999999999999998887543 334444443
|
|
| >PF08167 RIX1: rRNA processing/ribosome biogenesis | Back alignment and domain information |
|---|
Probab=81.21 E-value=13 Score=35.10 Aligned_cols=107 Identities=21% Similarity=0.234 Sum_probs=71.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhc--CCHHHHHHhhccCCChhHHHHHHHHHHHHhc---CChh
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS--GILPVLVECLERSDRPNLQFEAAWALTNIAS---GTSA 122 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~--g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~---~~~~ 122 (845)
.+. ++++++++..+..++.-++..+..+. .+.+.+. ..+..|++.|+..+.+.+...+..+|..+.. +.++
T Consensus 29 ri~-~LL~s~~~~~rw~G~~Ll~~~~~~~~---~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~ 104 (165)
T PF08167_consen 29 RIN-SLLQSKSAYSRWAGLCLLKVTVEQCS---WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT 104 (165)
T ss_pred HHH-HHhCCCChhhHHHHHHHHHHHHHHhh---HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence 344 78899999999999999998887542 3444433 3688899999777777888888888887763 4444
Q ss_pred hHHHHHH---cCChHHHHHhhCCCChhHHHHHHHHHHHhcC
Q psy12605 123 QTQEVVA---AGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 160 (845)
Q Consensus 123 ~~~~i~~---~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~ 160 (845)
..+.+.. .+.++.++++++. ....+.++.+|..+-.
T Consensus 105 l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~ 143 (165)
T PF08167_consen 105 LTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP 143 (165)
T ss_pred hHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence 4444433 2344555555554 4556666666666654
|
|
| >PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 [] | Back alignment and domain information |
|---|
Probab=80.36 E-value=19 Score=42.51 Aligned_cols=94 Identities=15% Similarity=0.171 Sum_probs=61.2
Q ss_pred CchhhHHhhcc----CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCC---chhhHHHHHHHHHHhhcC
Q psy12605 283 GVVPSLIPLLS----HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP---KEKICKEAVWFLSNITAG 355 (845)
Q Consensus 283 g~i~~Lv~lL~----~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~---~~~~~~~a~~~L~nl~~~ 355 (845)
.+++.+...+. ..+..-+..++++|||+-.. ..++.+...+... ...+|..|+++|..++..
T Consensus 486 ~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~g~~-----------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 486 KYVPYLEQELKEAVSRGDEEEKIVYLKALGNLGHP-----------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp GGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-G-----------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred HHHHHHHHHHHHHhhccCHHHHHHHHHHhhccCCc-----------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 34455555553 45667888999999999422 2455566666444 678999999999998766
Q ss_pred ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 356 NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 356 ~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
.+.. +.+.++.++.+.. .++++|..|..+|..
T Consensus 555 ~~~~--------v~~~l~~I~~n~~---e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 CPEK--------VREILLPIFMNTT---EDPEVRIAAYLILMR 586 (618)
T ss_dssp -HHH--------HHHHHHHHHH-TT---S-HHHHHHHHHHHHH
T ss_pred CcHH--------HHHHHHHHhcCCC---CChhHHHHHHHHHHh
Confidence 6644 3456677777754 578888888766655
|
Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A. |
| >PF10363 DUF2435: Protein of unknown function (DUF2435) | Back alignment and domain information |
|---|
Probab=80.11 E-value=5.6 Score=33.34 Aligned_cols=70 Identities=7% Similarity=0.127 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
++..++..|..+....+ ....-..+++..+...|+++++.|-.+|+++|..++...+. .+++.|++...+
T Consensus 19 vRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~--------~vl~~L~~~y~~ 88 (92)
T PF10363_consen 19 VRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD--------EVLPILLDEYAD 88 (92)
T ss_pred hHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH--------HHHHHHHHHHhC
Confidence 88999999999887665 12222346777888899999999999999999999865433 244555555443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 845 | ||||
| 3tpo_A | 529 | Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP | 2e-99 | ||
| 3tpo_A | 529 | Crystal Structure Of D192aE396A MUTANT OF MOUSE IMP | 3e-73 | ||
| 2ynr_A | 461 | Mimp_alphadibb_b54nls Length = 461 | 3e-93 | ||
| 2ynr_A | 461 | Mimp_alphadibb_b54nls Length = 461 | 7e-71 | ||
| 1ial_A | 453 | Importin Alpha, Mouse Length = 453 | 3e-93 | ||
| 1ial_A | 453 | Importin Alpha, Mouse Length = 453 | 9e-71 | ||
| 3rz9_A | 510 | Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt | 5e-93 | ||
| 3rz9_A | 510 | Mouse Importin Alpha-Ku80 Nls Peptide Complex Lengt | 7e-75 | ||
| 4ba3_A | 496 | Mimp_alphadibb_a89nls Length = 496 | 7e-93 | ||
| 4ba3_A | 496 | Mimp_alphadibb_a89nls Length = 496 | 1e-74 | ||
| 4htv_A | 509 | Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex | 1e-92 | ||
| 4htv_A | 509 | Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex | 1e-74 | ||
| 3ukw_B | 510 | Mouse Importin Alpha: Bimax1 Peptide Complex Length | 2e-92 | ||
| 3ukw_B | 510 | Mouse Importin Alpha: Bimax1 Peptide Complex Length | 1e-74 | ||
| 1q1s_C | 466 | Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid | 3e-92 | ||
| 1q1s_C | 466 | Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptid | 1e-74 | ||
| 3fex_C | 467 | Crystal Structure Of The Cbc-Importin Alpha Complex | 3e-92 | ||
| 3fex_C | 467 | Crystal Structure Of The Cbc-Importin Alpha Complex | 3e-73 | ||
| 1ejl_I | 460 | Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti | 4e-92 | ||
| 1ejl_I | 460 | Mouse Importin Alpha-Sv40 Large T Antigen Nls Pepti | 1e-74 | ||
| 2c1m_A | 424 | Nup50:importin-Alpha Complex Length = 424 | 4e-92 | ||
| 2c1m_A | 424 | Nup50:importin-Alpha Complex Length = 424 | 4e-71 | ||
| 3l3q_A | 427 | Mouse Importin Alpha-Peptm Nls Peptide Complex Leng | 4e-92 | ||
| 3l3q_A | 427 | Mouse Importin Alpha-Peptm Nls Peptide Complex Leng | 4e-71 | ||
| 1y2a_C | 428 | Structure Of Mammalian Importin Bound To The Non-Cl | 4e-92 | ||
| 1y2a_C | 428 | Structure Of Mammalian Importin Bound To The Non-Cl | 4e-71 | ||
| 3btr_C | 427 | Ar-Nls:importin-Alpha Complex Length = 427 | 5e-92 | ||
| 3btr_C | 427 | Ar-Nls:importin-Alpha Complex Length = 427 | 1e-70 | ||
| 3ve6_A | 426 | Crystal Structure Analysis Of Venezuelan Equine Enc | 5e-92 | ||
| 3ve6_A | 426 | Crystal Structure Analysis Of Venezuelan Equine Enc | 1e-70 | ||
| 3tpm_A | 422 | Crystal Structure Of Mal Rpel Domain In Complex Wit | 5e-92 | ||
| 3tpm_A | 422 | Crystal Structure Of Mal Rpel Domain In Complex Wit | 2e-70 | ||
| 4b8j_A | 528 | Rimp_alpha1a Length = 528 | 1e-86 | ||
| 4b8j_A | 528 | Rimp_alpha1a Length = 528 | 3e-64 | ||
| 4b8j_A | 528 | Rimp_alpha1a Length = 528 | 2e-08 | ||
| 1wa5_B | 530 | Crystal Structure Of The Exportin Cse1p Complexed W | 3e-86 | ||
| 1wa5_B | 530 | Crystal Structure Of The Exportin Cse1p Complexed W | 1e-59 | ||
| 3tj3_A | 447 | Structure Of Importin A5 Bound To The N-Terminus Of | 7e-85 | ||
| 3tj3_A | 447 | Structure Of Importin A5 Bound To The N-Terminus Of | 3e-61 | ||
| 3tj3_A | 447 | Structure Of Importin A5 Bound To The N-Terminus Of | 3e-07 | ||
| 2jdq_A | 450 | C-Terminal Domain Of Influenza A Virus Polymerase P | 7e-85 | ||
| 2jdq_A | 450 | C-Terminal Domain Of Influenza A Virus Polymerase P | 3e-61 | ||
| 2jdq_A | 450 | C-Terminal Domain Of Influenza A Virus Polymerase P | 3e-07 | ||
| 2yns_A | 490 | Rimp_alpha_b54nls Length = 490 | 5e-82 | ||
| 2yns_A | 490 | Rimp_alpha_b54nls Length = 490 | 5e-64 | ||
| 2yns_A | 490 | Rimp_alpha_b54nls Length = 490 | 9e-09 | ||
| 1ee4_A | 423 | Crystal Structure Of Yeast Karyopherin (Importin) A | 5e-77 | ||
| 1ee4_A | 423 | Crystal Structure Of Yeast Karyopherin (Importin) A | 2e-56 | ||
| 1bk6_A | 422 | Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng | 5e-77 | ||
| 1bk6_A | 422 | Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Leng | 9e-57 | ||
| 1ee5_A | 424 | Yeast Karyopherin (Importin) Alpha In A Complex Wit | 5e-77 | ||
| 1ee5_A | 424 | Yeast Karyopherin (Importin) Alpha In A Complex Wit | 2e-56 | ||
| 1un0_A | 443 | Crystal Structure Of Yeast Karyopherin (Importin) A | 6e-77 | ||
| 1un0_A | 443 | Crystal Structure Of Yeast Karyopherin (Importin) A | 1e-58 | ||
| 2c1t_A | 454 | Structure Of The Kap60p:nup2 Complex Length = 454 | 7e-77 | ||
| 2c1t_A | 454 | Structure Of The Kap60p:nup2 Complex Length = 454 | 4e-59 | ||
| 1bk5_A | 422 | Karyopherin Alpha From Saccharomyces Cerevisiae Len | 1e-76 | ||
| 1bk5_A | 422 | Karyopherin Alpha From Saccharomyces Cerevisiae Len | 6e-57 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 5e-38 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 2e-31 | ||
| 4db8_A | 252 | Designed Armadillo-Repeat Protein Length = 252 | 1e-23 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 2e-32 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 4e-21 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 1e-12 | ||
| 4db9_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aiii) Leng | 4e-12 | ||
| 4db6_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aii) Lengt | 7e-30 | ||
| 4db6_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aii) Lengt | 2e-21 | ||
| 4db6_A | 210 | Designed Armadillo Repeat Protein (Yiiim3aii) Lengt | 9e-16 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 6e-29 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 1e-18 | ||
| 4dba_A | 210 | Designed Armadillo Repeat Protein (Yiim3aii) Length | 1e-13 | ||
| 4hxt_A | 252 | Crystal Structure Of Engineered Protein. Northeast | 9e-20 |
| >pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529 | Back alignment and structure |
|
| >pdb|3TPO|A Chain A, Crystal Structure Of D192aE396A MUTANT OF MOUSE IMPORTIN ALPHA2 Length = 529 | Back alignment and structure |
|
| >pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461 | Back alignment and structure |
|
| >pdb|2YNR|A Chain A, Mimp_alphadibb_b54nls Length = 461 | Back alignment and structure |
|
| >pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453 | Back alignment and structure |
|
| >pdb|1IAL|A Chain A, Importin Alpha, Mouse Length = 453 | Back alignment and structure |
|
| >pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|3RZ9|A Chain A, Mouse Importin Alpha-Ku80 Nls Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496 | Back alignment and structure |
|
| >pdb|4BA3|A Chain A, Mimp_alphadibb_a89nls Length = 496 | Back alignment and structure |
|
| >pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509 | Back alignment and structure |
|
| >pdb|4HTV|A Chain A, Mouse Importin Alpha: Bfdv Cap Nls Peptide Complex Length = 509 | Back alignment and structure |
|
| >pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|3UKW|B Chain B, Mouse Importin Alpha: Bimax1 Peptide Complex Length = 510 | Back alignment and structure |
|
| >pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466 | Back alignment and structure |
|
| >pdb|1Q1S|C Chain C, Mouse Importin Alpha- Phosphorylated Sv40 Cn Peptide Complex Length = 466 | Back alignment and structure |
|
| >pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 | Back alignment and structure |
|
| >pdb|3FEX|C Chain C, Crystal Structure Of The Cbc-Importin Alpha Complex. Length = 467 | Back alignment and structure |
|
| >pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460 | Back alignment and structure |
|
| >pdb|1EJL|I Chain I, Mouse Importin Alpha-Sv40 Large T Antigen Nls Peptide Complex Length = 460 | Back alignment and structure |
|
| >pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424 | Back alignment and structure |
|
| >pdb|2C1M|A Chain A, Nup50:importin-Alpha Complex Length = 424 | Back alignment and structure |
|
| >pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427 | Back alignment and structure |
|
| >pdb|3L3Q|A Chain A, Mouse Importin Alpha-Peptm Nls Peptide Complex Length = 427 | Back alignment and structure |
|
| >pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428 | Back alignment and structure |
|
| >pdb|1Y2A|C Chain C, Structure Of Mammalian Importin Bound To The Non-Classical Plscr1-Nls Length = 428 | Back alignment and structure |
|
| >pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427 | Back alignment and structure |
|
| >pdb|3BTR|C Chain C, Ar-Nls:importin-Alpha Complex Length = 427 | Back alignment and structure |
|
| >pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426 | Back alignment and structure |
|
| >pdb|3VE6|A Chain A, Crystal Structure Analysis Of Venezuelan Equine Encephalitis Virus Capsid Protein Nls And Importin Alpha Length = 426 | Back alignment and structure |
|
| >pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422 | Back alignment and structure |
|
| >pdb|3TPM|A Chain A, Crystal Structure Of Mal Rpel Domain In Complex With Importin-Alpha Length = 422 | Back alignment and structure |
|
| >pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 | Back alignment and structure |
|
| >pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 | Back alignment and structure |
|
| >pdb|4B8J|A Chain A, Rimp_alpha1a Length = 528 | Back alignment and structure |
|
| >pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 | Back alignment and structure |
|
| >pdb|1WA5|B Chain B, Crystal Structure Of The Exportin Cse1p Complexed With Its Cargo (Kap60p) And Rangtp Length = 530 | Back alignment and structure |
|
| >pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447 | Back alignment and structure |
|
| >pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447 | Back alignment and structure |
|
| >pdb|3TJ3|A Chain A, Structure Of Importin A5 Bound To The N-Terminus Of Nup50 Length = 447 | Back alignment and structure |
|
| >pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450 | Back alignment and structure |
|
| >pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450 | Back alignment and structure |
|
| >pdb|2JDQ|A Chain A, C-Terminal Domain Of Influenza A Virus Polymerase Pb2 Subunit In Complex With Human Importin Alpha5 Length = 450 | Back alignment and structure |
|
| >pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 | Back alignment and structure |
|
| >pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 | Back alignment and structure |
|
| >pdb|2YNS|A Chain A, Rimp_alpha_b54nls Length = 490 | Back alignment and structure |
|
| >pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 | Back alignment and structure |
|
| >pdb|1EE4|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In A Complex With A C-Myc Nls Peptide Length = 423 | Back alignment and structure |
|
| >pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 | Back alignment and structure |
|
| >pdb|1BK6|A Chain A, Karyopherin Alpha (Yeast) + Sv40 T Antigen Nls Length = 422 | Back alignment and structure |
|
| >pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 | Back alignment and structure |
|
| >pdb|1EE5|A Chain A, Yeast Karyopherin (Importin) Alpha In A Complex With A Nucleoplasmin Nls Peptide Length = 424 | Back alignment and structure |
|
| >pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 | Back alignment and structure |
|
| >pdb|1UN0|A Chain A, Crystal Structure Of Yeast Karyopherin (Importin) Alpha In Complex With A Nup2p N-Terminal Fragment Length = 443 | Back alignment and structure |
|
| >pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 | Back alignment and structure |
|
| >pdb|2C1T|A Chain A, Structure Of The Kap60p:nup2 Complex Length = 454 | Back alignment and structure |
|
| >pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 | Back alignment and structure |
|
| >pdb|1BK5|A Chain A, Karyopherin Alpha From Saccharomyces Cerevisiae Length = 422 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB9|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aiii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DB6|A Chain A, Designed Armadillo Repeat Protein (Yiiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210 | Back alignment and structure |
|
| >pdb|4HXT|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or329 Length = 252 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 419 bits (1078), Expect = e-138
Identities = 186/463 (40%), Positives = 250/463 (53%), Gaps = 45/463 (9%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLV---------- 50
+RRRR+ VELRK KR+E L KRRN + D E + V+ D
Sbjct: 32 LRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 91
Query: 51 -VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+ D+ + QL A R++LS + PPI+ +I +G++P LVE + + LQ EA
Sbjct: 92 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 151
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV
Sbjct: 152 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 211
Query: 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
+ + P+L + S +R TW + NLCR K P P S + + LP L LI+ D
Sbjct: 212 LQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 270
Query: 230 TSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289
T + LVD WA+SYL+DG + IQ VID + L+
Sbjct: 271 T-------------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 305
Query: 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFL 349
LLSH+ VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W +
Sbjct: 306 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 365
Query: 350 SNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG---TSAQ 406
SNITAGN Q+QAVIDA L+P ++ L+ + EA WA++N +SG
Sbjct: 366 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-----EYKTKKEACWAISNASSGGLQRPDI 420
Query: 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449
+ +V+ G + LL + + E + AL NI+ G +
Sbjct: 421 IRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADK 463
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = 1e-98
Identities = 162/536 (30%), Positives = 234/536 (43%), Gaps = 101/536 (18%)
Query: 314 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDAGLLPKI 372
+ +Q L L + A I + ++ + VI AG++P++
Sbjct: 76 SADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRL 135
Query: 373 IANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 432
+ +++ LQ EAAWALTNIASGTSAQT+ VV A AVPLF++LL + V E
Sbjct: 136 VEFMRENQP----EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKE 191
Query: 433 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 492
QA+WALGN+ GD RDYV+ + P+L + S +R TW + NLCR K P P
Sbjct: 192 QAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQP 250
Query: 493 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNS 552
S + + LP L LI+ DT + C + YLS
Sbjct: 251 DWSVVSQALPTLAKLIYSMDTET---------------------LVDACWA-ISYLSD-- 286
Query: 553 GPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
G E Q +++ LL+H + A+ + NI
Sbjct: 287 ------------------GPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVT 328
Query: 613 GNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQ 665
GN Q Q VI+AG+LP + N++K +C ++ N+ N +V
Sbjct: 329 GNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTIS------NITAGNTEQIQAVIDA 382
Query: 666 NVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTIS 725
N+ ++ E++T+KEA WAISN +
Sbjct: 383 NLIPPLV-----------------------------KLLEVAEYKTKKEACWAISNASSG 413
Query: 726 G--NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVET-------L 776
G D + LV +G I P CDLL D ++I+V LD + N+LKM +A E
Sbjct: 414 GLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINEN 473
Query: 777 ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED--NLGPQVTDGGF 830
A+ IE+ GG++KI Q +EN +IY+ AY IIE YF E ED + PQ F
Sbjct: 474 ADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGEEEDAVDETMAPQNAGNTF 529
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 153 bits (388), Expect = 1e-39
Identities = 62/341 (18%), Positives = 126/341 (36%), Gaps = 43/341 (12%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
++ + E++ A+ + + + D + ++ + ++ S++P+L A
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNV-AGDSTDYRDYVLQCNAMEPILGLFN-SNKPSLIRTAT 236
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
W L+N+ G Q V + A+P +L+ S + A WA+ + + VI
Sbjct: 237 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVI 296
Query: 171 NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 230
++ + L+ + + + N+ D + +LPAL +L+
Sbjct: 297 DVRIPKRLVELLSHEST-LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE 355
Query: 231 SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290
+ I + W +S +T G +QIQ VID+ ++P L+
Sbjct: 356 N-------------------------IKKEACWTISNITAGNTEQIQAVIDANLIPPLVK 390
Query: 291 LLSHKEVKVQTASLRAVGNIVTGTD---EQTQVILNCDALSHFPALLTHPKEKICKEAVW 347
LL E K + + A+ N +G + + +++ + LL +I + +
Sbjct: 391 LLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLD 450
Query: 348 FLSNI-----------TAGNQAQVQAVIDAGLLPKIIANLQ 377
L NI + AG + KI N Q
Sbjct: 451 ALENILKMGEADKEARGLNINENADFIEKAGGMEKIF-NCQ 490
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 1e-31
Identities = 58/295 (19%), Positives = 104/295 (35%), Gaps = 45/295 (15%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132
L K P + + S LP L + + D +A WA++ ++ G Q V+
Sbjct: 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMD-TETLVDACWAISYLSDGPQEAIQAVIDVRI 300
Query: 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 192
+ LL + V A+ A+GNI+ VIN GV+P L + + +
Sbjct: 301 PKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKE-NIKK 359
Query: 193 NVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250
W I N+ + +I+ L+P L L+ +
Sbjct: 360 EACWTISNITA--GNTEQIQAVIDANLIPPLVKLLEVAE--------------------- 396
Query: 251 LVSKMKILVDTVWALSYLTDGGN---DQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAV 307
K + WA+S + GG D I+ ++ G + L LL + ++ +L A+
Sbjct: 397 ----YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDAL 452
Query: 308 GNIV-----------TGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351
NI+ +E I + + +KI ++A +
Sbjct: 453 ENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIET 507
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 405 bits (1041), Expect = e-133
Identities = 188/475 (39%), Positives = 267/475 (56%), Gaps = 44/475 (9%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLV---VEAARKD 57
R E K E ++ D Q ++ V V+ +
Sbjct: 10 GLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSN 69
Query: 58 NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+AWALTNIA
Sbjct: 70 NLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIA 129
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
SGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD VI G + P
Sbjct: 130 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDP 189
Query: 178 LLSFIK----PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVS 233
LL+ + + +LRN+TW + NLCRNK+P P + + ++LP L L+HH+D
Sbjct: 190 LLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP--- 246
Query: 234 IYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293
++L D+ WA+SYLTDG N++I+MV+ GVVP L+ LL
Sbjct: 247 ----------------------EVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG 284
Query: 294 HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNIT 353
E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA W +SNIT
Sbjct: 285 ATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNIT 344
Query: 354 AGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVA 412
AG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT Q +V
Sbjct: 345 AGRQDQIQQVVNHGLVPFLVGVLSKA-----DFKTQKEAAWAITNYTSGGTVEQIVYLVH 399
Query: 413 AGAVPLFLRLLMSPHSNVCEQAVWALGNI------IGDGPQLRDYVINMGVVPPL 461
G + + LL + + + + + A+ NI +G+ +L + G + +
Sbjct: 400 CGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKI 454
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 329 bits (845), Expect = e-104
Identities = 174/558 (31%), Positives = 257/558 (46%), Gaps = 97/558 (17%)
Query: 303 SLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ-VQ 361
L + D + ++ + + +A + + + +
Sbjct: 35 DLGTDDDDKAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPID 94
Query: 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR 421
+I AGL+PK ++ L K +QFE+AWALTNIASGTS QT+ VV GA+P F+
Sbjct: 95 NIIRAGLIPKFVSFLGKTDC----SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFIS 150
Query: 422 LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK----PDIPISFLRNV 477
LL SPH+++ EQAVWALGNI GDG RD VI G + PLL+ + + +LRN+
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNL 210
Query: 478 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 537
TW + NLCRNK+P P + + ++LP L L+HH+D V
Sbjct: 211 TWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEV---------------------L 249
Query: 538 MKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE 597
C + YL+ G +E+ ++++ + LL +
Sbjct: 250 ADSCWA-ISYLTD--------------------GPNERIEMVVKKGVVPQLVKLLGATEL 288
Query: 598 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNN 650
I A+ + NI G Q Q VIDAG L + N+QK + ++ N
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMS------N 342
Query: 651 MVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQ 710
+ V + ++ + +F+
Sbjct: 343 ITAGRQDQIQQVVNHGLVPFLV-----------------------------GVLSKADFK 373
Query: 711 TQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMAD 770
TQKEAAWAI+N T G +Q+ LV G+I P +LLS KD ++IQV+LD I+N+ + A+
Sbjct: 374 TQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAE 433
Query: 771 --AQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED-NLGPQVTD 827
+ E L+ MIEECGGLDKIE LQ HEN +YK + ++IE+YFS E+ED N+ P+ T
Sbjct: 434 KLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTS 493
Query: 828 GGFELDQNPSIPNEGFKF 845
GF F F
Sbjct: 494 EGFAFQVQDG-APGTFNF 510
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 186 bits (474), Expect = 3e-51
Identities = 89/407 (21%), Positives = 155/407 (38%), Gaps = 20/407 (4%)
Query: 261 TVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE-VKVQTASLRAVGNIVTGTDEQTQ 319
T A L+ I +I +G++P + L + +Q S A+ NI +GT EQT+
Sbjct: 78 TQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK 137
Query: 320 VILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV 379
+++ A+ F +LL P I ++AVW L NI A VI G + ++A L
Sbjct: 138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVP 197
Query: 380 GRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439
L W L+N+ + +P +RLL V + WA+
Sbjct: 198 DLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAIS 257
Query: 440 NIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTII 498
+ + + V+ GVVP L+ + ++PI + I N+ D
Sbjct: 258 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPI--VTPALRAIGNIVTGTDEQTQKVIDA 315
Query: 499 ELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMS 556
L L+ + T++ W +S I Q V + + + + +
Sbjct: 316 GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLV-GVLSKADFKT 374
Query: 557 CQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI------ 610
++ +I S GT EQ +++C + LL+ KI + + +SNI
Sbjct: 375 QKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEK 434
Query: 611 TAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNN 650
+ + + G L KI A ++ K S ++ KY
Sbjct: 435 LGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEE 481
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 2e-36
Identities = 68/301 (22%), Positives = 123/301 (40%), Gaps = 34/301 (11%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132
L +KNP ILP LV L +D P + ++ WA++ + G + + + VV G
Sbjct: 217 LCRNKNPAPPLDAVEQILPTLVRLLHHND-PEVLADSCWAISYLTDGPNERIEMVVKKGV 275
Query: 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 192
VP ++LL + + A+ A+GNI+ + VI+ G + S + + +
Sbjct: 276 VPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKT-NIQK 334
Query: 193 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 252
TW + N+ + L+P L ++ D
Sbjct: 335 EATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADF---------------------- 372
Query: 253 SKMKILVDTVWALSYLTDGG-NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNI- 310
K + WA++ T GG +QI ++ G++ L+ LLS K+ K+ L A+ NI
Sbjct: 373 ---KTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIF 429
Query: 311 -----VTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365
+ T++ + +I C L AL H E + K ++ + + + + Q V+
Sbjct: 430 QAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVP 489
Query: 366 A 366
Sbjct: 490 E 490
|
| >3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510 | Back alignment and structure |
|---|
Score = 128 bits (322), Expect = 3e-31
Identities = 62/290 (21%), Positives = 114/290 (39%), Gaps = 37/290 (12%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
+V ++PE+ + + L + N IE ++ G++P LV+ L + +
Sbjct: 236 TLVRLLHHNDPEVLADSCWAISYL-TDGPNERIEMVVKKGVVPQLVKLL-GATELPIVTP 293
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168
A A+ NI +GT QTQ+V+ AGA+ +F LL +P +N+ ++A W + NI
Sbjct: 294 ALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ 353
Query: 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIH 226
V+N G+VP L+ + + W I N + ++ ++ L L+
Sbjct: 354 VVNHGLVPFLVG-VLSKADFKTQKEAAWAITNYTSGGTVE-QIVYLVHCGIIEPLMNLLS 411
Query: 227 HHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG------NDQIQMVI 280
DT KI+ + A+S + M+
Sbjct: 412 AKDT-------------------------KIIQVILDAISNIFQAAEKLGETEKLSIMIE 446
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF 330
+ G + + L H+ V ASL + + +E+ Q ++ F
Sbjct: 447 ECGGLDKIEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGF 496
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 378 bits (971), Expect = e-123
Identities = 184/440 (41%), Positives = 244/440 (55%), Gaps = 35/440 (7%)
Query: 29 LADSTDEDDIEKMAQVNLDM-LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI-H 86
+ + + +MA + ++E +PE QL A Q RKLLS + NPPI+ +I
Sbjct: 3 MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
G++ VE L+R + LQFE+AW LTNIASG S QT+ V+ AGAVP+F+ LL S +
Sbjct: 63 PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFED 122
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206
V EQAVWALGNI GD RDYV++ ++PPLL ++ RN W + NLCR K
Sbjct: 123 VQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKS 182
Query: 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266
PPP + + L L+ L+ D +L D WALS
Sbjct: 183 PPPEFAKVSPCLNVLSWLLFVSD-------------------------TDVLADACWALS 217
Query: 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326
YL+DG ND+IQ VID+GV L+ LL H + KV + +LRAVGNIVTG D QTQVILNC A
Sbjct: 218 YLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSA 277
Query: 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRP 386
L LL+ PKE I KEA W +SNITAGN+AQ+Q VIDA + P +I+ LQ
Sbjct: 278 LQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-----EF 332
Query: 387 NLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
+ EAAWA+TN S G++ Q + +V G + LL S + + A+ L NI+ G
Sbjct: 333 RTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLG 392
Query: 446 PQLRDYVINMGVVPPLLSFI 465
Q N + P + I
Sbjct: 393 EQEAK--RNGTGINPYCALI 410
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 314 bits (805), Expect = 8e-99
Identities = 148/524 (28%), Positives = 232/524 (44%), Gaps = 97/524 (18%)
Query: 313 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI-TAGNQAQVQAVI-DAGLLP 370
++ S ++ + A + + + VI G++
Sbjct: 8 AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67
Query: 371 KIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNV 430
+ + L++ LQFE+AW LTNIASG S QT+ V+ AGAVP+F+ LL S +V
Sbjct: 68 RFVEFLKRKEN----CTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDV 123
Query: 431 CEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 490
EQAVWALGNI GD RDYV++ ++PPLL ++ RN W + NLCR K P
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183
Query: 491 PPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSH 550
PP + + L L+ L+ DT V C L YLS
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTDV---------------------LADACWA-LSYLSD 221
Query: 551 NSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI 610
G +++ Q +++ LL H K+ A+ + NI
Sbjct: 222 --------------------GPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNI 261
Query: 611 TAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKILNKYLDNNNMVLHNVLLQMSVF 663
G+ Q Q +++ L ++ +++K +C ++ N+ N +V
Sbjct: 262 VTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTIS------NITAGNRAQIQTVI 315
Query: 664 LQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT 723
N+ +I EF+T+KEAAWAI+N T
Sbjct: 316 DANIFPALI-----------------------------SILQTAEFRTRKEAAWAITNAT 346
Query: 724 ISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMAD-------AQVETL 776
G+ +Q+ LV+ G I P CDLL+ D++++QV L+G+ N+L++ + +
Sbjct: 347 SGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPY 406
Query: 777 ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDN 820
+IEE GLDKIE LQ+HEN EIY+ A+D+IE YF +++ +
Sbjct: 407 CALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFGTEDEDSS 450
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 175 bits (446), Expect = 7e-48
Identities = 84/402 (20%), Positives = 153/402 (38%), Gaps = 32/402 (7%)
Query: 268 LTDGGNDQIQMVI-DSGVVPSLIPLLS-HKEVKVQTASLRAVGNIVTGTDEQTQVILNCD 325
L+ N I VI GVV + L + +Q S + NI +G QT++++
Sbjct: 48 LSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAG 107
Query: 326 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR 385
A+ F LL+ E + ++AVW L NI + V+D +LP ++ K R+ +
Sbjct: 108 AVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMT 167
Query: 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
N A WAL+N+ G S + + + + LL ++V A WAL +
Sbjct: 168 RN----AVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGP 223
Query: 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALN 505
VI+ GV L+ + + + + N+ D + L +L
Sbjct: 224 NDKIQAVIDAGVCRRLVELLMHNDY-KVVSPALRAVGNIVTGDDIQTQVILNCSALQSLL 282
Query: 506 ILIHHHDTSV---SIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQH 562
L+ S+ + + +I N + ++ + L + + + ++
Sbjct: 283 HLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPA--LISILQTAEFRTRKEAAW 340
Query: 563 SIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNI-----------T 611
+I S G+ EQ + ++ + LLT KI + A+ L NI
Sbjct: 341 AITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNG 400
Query: 612 AGNQAQVQAVIDAGLLPKIIANLQ--------KRSCKILNKY 645
G + +A L KI LQ +++ ++ Y
Sbjct: 401 TGINPYCALIEEAYGLDKIE-FLQSHENQEIYQKAFDLIEHY 441
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 8e-29
Identities = 52/272 (19%), Positives = 101/272 (37%), Gaps = 20/272 (7%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
++ + ++ A + L S N I+A+I +G+ LVE L + +
Sbjct: 196 VLSWLLFVSDTDVLADACWALSYL-SDGPNDKIQAVIDAGVCRRLVELL-MHNDYKVVSP 253
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168
A A+ NI +G QTQ ++ A+ L LL SP ++ ++A W + NI
Sbjct: 254 ALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQT 313
Query: 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIH 226
VI+ + P L+S ++ + W I N + ++E + L L+
Sbjct: 314 VIDANIFPALISILQ-TAEFRTRKEAAWAITNATSGGSAE-QIKYLVELGCIKPLCDLLT 371
Query: 227 HHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVP 286
D+ + + L IL G N ++ ++ +
Sbjct: 372 VMDSKI--------------VQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLD 417
Query: 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT 318
+ L SH+ ++ + + + DE +
Sbjct: 418 KIEFLQSHENQEIYQKAFDLIEHYFGTEDEDS 449
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 262 bits (672), Expect = 2e-78
Identities = 81/517 (15%), Positives = 162/517 (31%), Gaps = 77/517 (14%)
Query: 32 STDEDDIEKMAQVN--LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGI 89
S E + + + +V ++ E LS + A+ SG
Sbjct: 45 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG-TLHNLSHHREGL-LAIFKSGG 102
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+P LV+ L S ++ F A L N+ V AG + + LL +
Sbjct: 103 IPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 161
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209
L + + + ++ G L++ ++ L + V+ L P
Sbjct: 162 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221
Query: 210 SMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSY 267
+ I+E + AL + + + + + +W L
Sbjct: 222 A---IVEAGGMQALGLHLTDPSQRL-------------------------VQNCLWTLRN 253
Query: 268 LTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327
L+D Q M G++ +L+ LL ++ V T + + N+ + ++ +
Sbjct: 254 LSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 310
Query: 328 SHFPALL--THPKEKICKEAVWFLSNITAGNQ---AQVQAVIDAGLLPKIIANLQKVGRI 382
+ +E I + A+ L ++T+ +Q AV LP ++ L
Sbjct: 311 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 370
Query: 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442
L +A L + A + GA+P ++LL+ H + +
Sbjct: 371 PLI-----KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 425
Query: 443 GDG---------------------PQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWV 480
R + + +P + + P I R V
Sbjct: 426 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENI--QRVAAGV 483
Query: 481 IVNLCRNKDPPPSMSTIIEL--LPALNILIHHHDTSV 515
+ L ++K+ + I L L+H + V
Sbjct: 484 LCELAQDKE---AAEAIEAEGATAPLTELLHSRNEGV 517
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 230 bits (587), Expect = 2e-66
Identities = 71/561 (12%), Positives = 158/561 (28%), Gaps = 98/561 (17%)
Query: 268 LTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327
+ + N Q + + +P L LL+ ++ V + V + + ++ + +
Sbjct: 2 VVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMV 61
Query: 328 SHFPALLTHPKE-KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRP 386
S + + + + + L N+ + ++ + A+ +G +P ++ L
Sbjct: 62 SAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPV-----D 115
Query: 387 NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446
++ F A L N+ V AG + + LL + L +
Sbjct: 116 SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQ 175
Query: 447 QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL--LPAL 504
+ + ++ G L++ ++ L + V+ L P+ I+E + AL
Sbjct: 176 ESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA---IVEAGGMQAL 232
Query: 505 NILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSI 564
+ + + ++ C L LS
Sbjct: 233 GLHLTDPSQRL----------------------VQNCLWTLRNLS--------------- 255
Query: 565 YMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 624
D T+ L LL + A LSN+T N V
Sbjct: 256 --------DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV 307
Query: 625 GLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRV 684
G + ++ + + + + + + +E + + V
Sbjct: 308 GGIEALVRTVLRAG---------DREDITEPAICALRHLTSRHQEAEMAQNA-------V 351
Query: 685 AATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFC 744
G L + +A + ++ A L ++G IP
Sbjct: 352 RLHYG--LPVVVKLLH-----PPSHWPLIKATVGLIRN-LALCPANHAPLREQGAIPRLV 403
Query: 745 DLLSCKDAQVIQVVLDGINNMLKMADAQVE--------TLANM---------IEECGGLD 787
LL + G + ++E L + I +
Sbjct: 404 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIP 463
Query: 788 KIEMLQNHENVEIYKLAYDII 808
L I ++A ++
Sbjct: 464 LFVQLLYSPIENIQRVAAGVL 484
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 4e-64
Identities = 82/572 (14%), Positives = 190/572 (33%), Gaps = 69/572 (12%)
Query: 78 NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137
N +A + + +P L + L + + +AA + ++ +++ + + V +
Sbjct: 7 NYQDDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 65
Query: 138 RLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 196
R + + + L N+ + + G +P L+ + + S L
Sbjct: 66 RTMQNTNDVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSPVD-SVLFYAIT 123
Query: 197 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMK 256
+ NL +++ + L + L++ + +K
Sbjct: 124 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTN-------------------------VK 158
Query: 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316
L T L L G + +++ SG +L+ ++ + + V +++
Sbjct: 159 FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 218
Query: 317 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 376
I+ + LT P +++ + +W L N++ Q GLL ++ L
Sbjct: 219 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLL 275
Query: 377 QKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN--VCEQA 434
N+ AA L+N+ V G + +R ++ + E A
Sbjct: 276 GSDD-----INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 330
Query: 435 VWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 491
+ AL ++ + ++ V +P ++ + P ++ +I NL
Sbjct: 331 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA-- 388
Query: 492 PSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLS 549
+ + + E +P L L+ + ++ + ++ C+ L+ L+
Sbjct: 389 -NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 447
Query: 550 HNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 609
+ VI + + F LL P E I + A L
Sbjct: 448 RD---------------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 486
Query: 610 ITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641
+ A ++ +A+ G + L R+ +
Sbjct: 487 L-AQDKEAAEAIEAEGATAPLTELLHSRNEGV 517
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 192 bits (489), Expect = 6e-53
Identities = 75/555 (13%), Positives = 162/555 (29%), Gaps = 71/555 (12%)
Query: 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQV 320
+ L+ + ++ +V +++ + + +V+ + + N+ + E
Sbjct: 38 AVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNL-SHHREGLLA 96
Query: 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVG 380
I + +L P + + A+ L N+ + AV AG L K++A L K
Sbjct: 97 IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNK-- 154
Query: 381 RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440
L +A G ++A+G + ++ + +
Sbjct: 155 ---TNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK 211
Query: 441 IIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL 500
++ + ++ G + L + D ++N W + NL D + L
Sbjct: 212 VLSVCSSNKPAIVEAGGMQALGLHLT-DPSQRLVQNCLWTLRNLS---DAATKQEGMEGL 267
Query: 501 LPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558
L L L+ D +V LS + N +K++V ++ + +
Sbjct: 268 LGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDIT 327
Query: 559 KKQHSIYMCVSPGTDE---QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 615
+ ++ E + L LL P +A L A
Sbjct: 328 EPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP 387
Query: 616 AQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSS 675
A + + G +P+++ L + + ++M
Sbjct: 388 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRME-------------- 433
Query: 676 FQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLV 735
+ + A+ L + + +
Sbjct: 434 ----------------------------------EIVEGCTGALHIL--ARDVHNRIVIR 457
Query: 736 QEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH 795
IP F LL + +V + + AQ + A IE G + L +
Sbjct: 458 GLNTIPLFVQLLYSPIENIQRVAAGVLCEL-----AQDKEAAEAIEAEGATAPLTELLHS 512
Query: 796 ENVEIYKLAYDIIER 810
N + A ++ R
Sbjct: 513 RNEGVATYAAAVLFR 527
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 168 bits (428), Expect = 8e-45
Identities = 71/524 (13%), Positives = 148/524 (28%), Gaps = 104/524 (19%)
Query: 306 AVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365
AV N++ + Q L A+ LL + + +A + ++ ++ +
Sbjct: 1 AVVNLI---NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57
Query: 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425
++ I+ +Q A L N+ S + +G +P +++L S
Sbjct: 58 PQMVSAIVRTMQNTND----VETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGS 112
Query: 426 PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485
P +V A+ L N++ + V G + +++ + FL T + L
Sbjct: 113 PVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV-KFLAITTDCLQILA 171
Query: 486 RNKDPPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSR 543
S I+ AL ++ + + SR
Sbjct: 172 YGN--QESKLIILASGGPQALVNIMRTYTYE---------------------KLLWTTSR 208
Query: 544 YLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 603
L LS I+ + LT P +++ +
Sbjct: 209 VLKVLSVC---------------------SSNKPAIVEAGGMQALGLHLTDPSQRLVQNC 247
Query: 604 VWFLSNITAGNQAQVQAVIDAGLLPKII-------ANLQKRSCKILNKYLDNNNMVLHNV 656
+W L N++ Q GLL ++ N+ + IL+ N+ +N
Sbjct: 248 LWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAGILS------NLTCNNY 298
Query: 657 LLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716
+M V E ++ + + + A
Sbjct: 299 KNKMMVCQVGGIEALV---------------------------RTVLRAGDREDITEPAI 331
Query: 717 WAISNLTISG--NRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVE 774
A+ +LT + +P LL + G+ L + A
Sbjct: 332 CALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHA 391
Query: 775 TLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDE 818
+ E G + ++ L + + + +
Sbjct: 392 ----PLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVR 431
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 148 bits (374), Expect = 8e-38
Identities = 58/373 (15%), Positives = 104/373 (27%), Gaps = 57/373 (15%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V R E L K+LS A++ +G + L L L
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCS-SNKPAIVEAGGMQALGLHL-TDPSQRLVQNCL 248
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
W L N++ T++ G + ++LL S NV A L N+ + + + V
Sbjct: 249 WTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 305
Query: 171 NMGVVPPLLSFIKPDIPISFLR-NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
+G + L+ + + + +L + L L +++
Sbjct: 306 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV---- 361
Query: 230 TSVSIYLWLSIIEKNPQISKILVS-KMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSL 288
K+L L+ L + + G +P L
Sbjct: 362 -------------------KLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRL 402
Query: 289 IPLLSHKEVKVQTASLRAVGNIVTGT---------------------DEQTQVILNCDAL 327
+ LL Q + VI + +
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTI 462
Query: 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPN 387
F LL P E I + A L + A ++ +A+ G + L
Sbjct: 463 PLFVQLLYSPIENIQRVAAGVLCEL-AQDKEAAEAIEAEGATAPLT-ELLHSRN----EG 516
Query: 388 LQFEAAWALTNIA 400
+ AA L ++
Sbjct: 517 VATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 8e-32
Identities = 50/329 (15%), Positives = 103/329 (31%), Gaps = 20/329 (6%)
Query: 32 STDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILP 91
S + + + + + L + + R L + G+L
Sbjct: 214 SVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK----QEGMEGLLG 269
Query: 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN--VCE 149
LV+ L D N+ AA L+N+ V G + +R ++ + E
Sbjct: 270 TLVQLLGSDD-INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITE 328
Query: 150 QAVWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206
A+ AL ++ + ++ V +P ++ + P ++ +I NL
Sbjct: 329 PAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA 388
Query: 207 PPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWA 264
+ + + E +P L L+ + + Q V +I+ A
Sbjct: 389 ---NHAPLREQGAIPRLVQLLVRAHQDT---QRRTSMGGTQQQFVEGVRMEEIVEGCTGA 442
Query: 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324
L L ++ +P + LL +Q + + + E + I
Sbjct: 443 LHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ-DKEAAEAIEAE 500
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNIT 353
A + LL E + A L ++
Sbjct: 501 GATAPLTELLHSRNEGVATYAAAVLFRMS 529
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529 | Back alignment and structure |
|---|
Score = 70.2 bits (172), Expect = 1e-12
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 6/132 (4%)
Query: 27 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH 86
V L +D + + VE R E+ + L N +
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVR--MEEIVEGCTGALHILARDVHN--RIVIRG 458
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
+P+ V+ L S N+Q AA L +A + + A GA LL S +
Sbjct: 459 LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEG 516
Query: 147 VCEQAVWALGNI 158
V A L +
Sbjct: 517 VATYAAAVLFRM 528
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 259 bits (664), Expect = 3e-76
Identities = 80/516 (15%), Positives = 162/516 (31%), Gaps = 75/516 (14%)
Query: 32 STDEDDIEKMAQVN--LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGI 89
S E + + + +V ++ E LS + A+ SG
Sbjct: 42 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAG-TLHNLSHHREGL-LAIFKSGG 99
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+P LV+ L S ++ F A L N+ V AG + + LL +
Sbjct: 100 IPALVKML-GSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLA 158
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209
L + + + ++ G L++ ++ L + V+ L P
Sbjct: 159 ITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218
Query: 210 SMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSY 267
I+E + AL + + + + + +W L
Sbjct: 219 ---AIVEAGGMQALGLHLTDPSQRL-------------------------VQNCLWTLRN 250
Query: 268 LTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327
L+D Q G++ +L+ LL ++ V T + + N+ + ++ +
Sbjct: 251 LSDAATKQEG---MEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGI 307
Query: 328 SHFPALL--THPKEKICKEAVWFLSNITAGNQ---AQVQAVIDAGLLPKIIANLQKVGRI 382
+ +E I + A+ L ++T+ +Q AV LP ++ L
Sbjct: 308 EALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHW 367
Query: 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN-- 440
L +A L + A + GA+P ++LL+ H + +
Sbjct: 368 PLI-----KATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQ 422
Query: 441 -------------------IIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 481
I+ R + + +P + + I + R V+
Sbjct: 423 FVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIE-NIQRVAAGVL 481
Query: 482 VNLCRNKDPPPSMSTIIEL--LPALNILIHHHDTSV 515
L ++K+ + I L L+H + V
Sbjct: 482 CELAQDKE---AAEAIEAEGATAPLTELLHSRNEGV 514
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 7e-72
Identities = 81/589 (13%), Positives = 192/589 (32%), Gaps = 76/589 (12%)
Query: 78 NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 137
N +A + + +P L + L + + +AA + ++ +++ + + V +
Sbjct: 4 NYQDDAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62
Query: 138 RLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 196
R + + + L N+ + + G +P L+ + + S L
Sbjct: 63 RTMQNTNDVETARCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAIT 120
Query: 197 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMK 256
+ NL +++ + L + L++ +
Sbjct: 121 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKF------------------------ 156
Query: 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316
L T L L G + +++ SG +L+ ++ + + V +++
Sbjct: 157 -LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSS 215
Query: 317 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 376
I+ + LT P +++ + +W L N++ + GLL ++ L
Sbjct: 216 NKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAAT---KQEGMEGLLGTLVQLL 272
Query: 377 QKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN--VCEQA 434
N+ AA L+N+ V G + +R ++ + E A
Sbjct: 273 GSDD-----INVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 327
Query: 435 VWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 491
+ AL ++ + ++ V +P ++ + P ++ +I NL P
Sbjct: 328 ICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC---P 384
Query: 492 PSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLS 549
+ + + E +P L L+ + ++ + ++ C+ L+ L+
Sbjct: 385 ANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILA 444
Query: 550 HNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 609
+ VI + + F LL P E I + A L
Sbjct: 445 RD---------------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCE 483
Query: 610 ITAGNQAQVQAVIDAGLLPKIIANL-------QKRSCKILNKYLDNNNM 651
+ A ++ +A+ G + L + +L + ++
Sbjct: 484 L-AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ 531
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 193 bits (491), Expect = 2e-52
Identities = 84/610 (13%), Positives = 195/610 (31%), Gaps = 39/610 (6%)
Query: 245 PQISKILVSKMKILV-DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTA 302
P+++K+L + +++V + L+ + ++ +V +++ + + +V+
Sbjct: 17 PELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 76
Query: 303 SLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362
+ + N+ + E I + +L P + + A+ L N+ + A
Sbjct: 77 TAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMA 135
Query: 363 VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRL 422
V AG L K++A L K L +A G ++A+G + +
Sbjct: 136 VRLAGGLQKMVALLNKT-----NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNI 190
Query: 423 LMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVI 481
+ + + ++ + ++ G + L + P + ++N W +
Sbjct: 191 MRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRL--VQNCLWTL 248
Query: 482 VNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMK 539
NL D + LL L L+ D +V LS + N +K++V ++
Sbjct: 249 RNLS---DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVG 305
Query: 540 VCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDE---QTQVILNCDALSHFPALLTHPK 596
+ + + ++ E + L LL P
Sbjct: 306 GIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365
Query: 597 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNV 656
+A L A A + + G +P+++ L + +
Sbjct: 366 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425
Query: 657 LLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAA 716
++M ++ + + + + + LF QL++ Q+ AA
Sbjct: 426 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLF-----VQLLY--SPIENIQRVAA 478
Query: 717 WAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETL 776
+ L + +++ + EG P +LL ++ V + M +
Sbjct: 479 GVLCEL--AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQ----- 531
Query: 777 ANMIEECGGLDKIEMLQNHENVEIYKLAYDII----ERYFSEVEDEDNLGPQVTDGGFEL 832
++ ++ L E + + A + + +D GG+
Sbjct: 532 --DYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDDPSYRSFHSGGYGQ 589
Query: 833 DQNPSIPNEG 842
D P
Sbjct: 590 DALGMDPMME 599
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 165 bits (420), Expect = 4e-43
Identities = 64/413 (15%), Positives = 117/413 (28%), Gaps = 55/413 (13%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V R E L K+LS + A++ +G + L L L
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSVCSSNK-PAIVEAGGMQALGLHL-TDPSQRLVQNCL 245
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
W L N++ T++ G + ++LL S NV A L N+ + + + V
Sbjct: 246 WTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVC 302
Query: 171 NMGVVPPLLSFIKPDIPISFLR-NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
+G + L+ + + + +L + L L +++
Sbjct: 303 QVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVK--- 359
Query: 230 TSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289
+ L+ L + + G +P L+
Sbjct: 360 -------------------LLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV 400
Query: 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFL 349
LL Q + + + I+ E
Sbjct: 401 QLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIV---------------------EGCTGA 439
Query: 350 SNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE 409
+I A + + +P + L N+Q AA L +A +
Sbjct: 440 LHILARDVHNRIVIRGLNTIPLFV-QLLYSPI----ENIQRVAAGVLCELAQ-DKEAAEA 493
Query: 410 VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 462
+ A GA LL S + V A L + D PQ +++ + L
Sbjct: 494 IEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF 546
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 79.6 bits (196), Expect = 2e-15
Identities = 32/153 (20%), Positives = 51/153 (33%), Gaps = 6/153 (3%)
Query: 27 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH 86
V L +D + + VE R E+ + L N +
Sbjct: 400 VQLLVRAHQDTQRRTSMGGTQQQFVEGVR--MEEIVEGCTGALHILARDVHN--RIVIRG 455
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
+P+ V+ L S N+Q AA L +A + + A GA LL S +
Sbjct: 456 LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEG 513
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179
V A L + D PQ +++ + L
Sbjct: 514 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF 546
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644 | Back alignment and structure |
|---|
Score = 56.9 bits (137), Expect = 2e-08
Identities = 22/122 (18%), Positives = 35/122 (28%), Gaps = 6/122 (4%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V+ +Q +A +L + EA+ G L E L S + AA
Sbjct: 463 VQLLYSPIENIQRVAAGVLCELAQDKEA--AEAIEAEGATAPLTELL-HSRNEGVATYAA 519
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
L ++ + Q+ +V L L + E A L P
Sbjct: 520 AVLFRMSED---KPQDYKKRLSVELTSSLFRTEPMAWNETADLGLDIGAQGEPLGYRQDD 576
Query: 171 NM 172
Sbjct: 577 PS 578
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 258 bits (660), Expect = 1e-74
Identities = 101/820 (12%), Positives = 231/820 (28%), Gaps = 138/820 (16%)
Query: 30 ADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGI 89
+ ++DD++ + ++ ++ + Q A + + G+
Sbjct: 49 KGNPEDDDVDNQVLYEWEQGFNQSFNQEQVAD--IDGQYAMTRAQRVRAAMFPETLDEGM 106
Query: 90 LPVLVECLERSDRPNLQF--EAAWALTNIASG-TSAQTQEVVAAGAVPLFLRLLMSPHSN 146
+ + + N+Q E + L + + Q +A A+P +LL
Sbjct: 107 QIPSTQ-FDSAHPTNVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQV 165
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206
V +A + + + + +V ++ ++ + R + + NL +++
Sbjct: 166 VVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHRE 225
Query: 207 PPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWA 264
I + +PAL ++ SV L +
Sbjct: 226 GL---LAIFKSGGIPALVNMLGSPVDSV-------------------------LFHAITT 257
Query: 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324
L L V +G + ++ LL+ VK + + + G E +IL
Sbjct: 258 LHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS 317
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
++ + + + + + A+++AG + + +L
Sbjct: 318 GGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP----- 372
Query: 385 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444
L W L N++ T++ G + ++LL S NV A L N+ +
Sbjct: 373 SQRLVQNCLWTLRNLSDA---ATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCN 429
Query: 445 GPQLRDYVINMGVVPPLLSFIKPDIP-ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPA 503
+ + V +G + L+ + + +L + L
Sbjct: 430 NYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYG 489
Query: 504 LNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHS 563
L +++ L P I K + L+
Sbjct: 490 LPVVVKL----------LHPPSHWPLI--------KATVGLIRNLALC------------ 519
Query: 564 IYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 623
+ A+ LL + + + +++ +++
Sbjct: 520 ---------PANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVE 570
Query: 624 AGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLR 683
A + L + I N+ +
Sbjct: 571 ACT--GALHIL---ARDIHNR-------------------------------------IV 588
Query: 684 VAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPF 743
+ LF QL++ Q+ AA + L + +++ + EG P
Sbjct: 589 IRGLNTIPLFV-----QLLY--SPIENIQRVAAGVLCEL--AQDKEAAEAIEAEGATAPL 639
Query: 744 CDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKL 803
+LL ++ V + M + + ++ E L + E + +E ++
Sbjct: 640 TELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSV-ELTSSLFRTEPMTWNETGDLGLD 698
Query: 804 AYDIIERYFSEVEDEDNLGPQVTDGGFELDQNPSIPNEGF 843
E +D GG+ D P
Sbjct: 699 IGAQGEPLG--YRQDDPSYRSFHSGGYGQDAMGMDPMMEH 736
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780 | Back alignment and structure |
|---|
Score = 78.9 bits (194), Expect = 3e-15
Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 6/154 (3%)
Query: 27 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH 86
V L +D + + VE R E+ + L N +
Sbjct: 536 VQLLVRAHQDTQRRTSMGGTQQQFVEGVR--MEEIVEACTGALHILARDIHN--RIVIRG 591
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
+P+ V+ L S N+Q AA L +A + + A GA LL S +
Sbjct: 592 LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEG 649
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180
V A L + D PQ +++ + L
Sbjct: 650 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFR 683
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 223 bits (570), Expect = 3e-67
Identities = 86/244 (35%), Positives = 132/244 (54%), Gaps = 7/244 (2%)
Query: 245 PQISKILVSK-MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303
PQ+++ L S M+ + S + GN+QIQ VID+G +P+L+ LLS ++ +
Sbjct: 15 PQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
L A+ NI +G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAV
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 423
IDAG LP ++ L + EA WAL+NIASG + Q Q V+ AGA+P ++LL
Sbjct: 135 IDAGALPALVQLLSSPN-----EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189
Query: 424 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483
SP+ + ++A+WAL NI G + + V G + L + +
Sbjct: 190 SSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQS-HENEKIQKEAQEALEK 248
Query: 484 LCRN 487
L +
Sbjct: 249 LQSH 252
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 4e-64
Identities = 78/262 (29%), Positives = 126/262 (48%), Gaps = 28/262 (10%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
+ D+ + QL A + ++LS D N I+A+I +G LP LV+ L + + EA
Sbjct: 18 TQQLNSDDMQEQLSATRKFSQILS-DGNEQIQAVIDAGALPALVQLLSSPN-EQILQEAL 75
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WAL+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 171 NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 230
+ G +P L+ + L+ W + N+ + LPAL L+ +
Sbjct: 136 DAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 194
Query: 231 SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290
+IL + +WALS + GGN+Q Q V ++G + L
Sbjct: 195 -------------------------QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQ 229
Query: 291 LLSHKEVKVQTASLRAVGNIVT 312
L SH+ K+Q + A+ + +
Sbjct: 230 LQSHENEKIQKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 6e-53
Identities = 81/276 (29%), Positives = 126/276 (45%), Gaps = 31/276 (11%)
Query: 81 IEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 140
H LP + + L SD Q A + I S + Q Q V+ AGA+P ++LL
Sbjct: 5 HHHHHHGSELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLL 63
Query: 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 200
SP+ + ++A+WAL NI G + VI+ G +P L+ + L+ W + N
Sbjct: 64 SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSN 122
Query: 201 LCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKIL 258
+ + +I+ LPAL L+ + + L
Sbjct: 123 IA--SGGNEQIQAVIDAGALPALVQLLSSPNEQI-------------------------L 155
Query: 259 VDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT 318
+ +WALS + GGN+QIQ VID+G +P+L+ LLS ++ +L A+ NI +G +EQ
Sbjct: 156 QEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQK 215
Query: 319 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
Q + AL L +H EKI KEA L + +
Sbjct: 216 QAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 179 bits (456), Expect = 2e-51
Identities = 73/294 (24%), Positives = 112/294 (38%), Gaps = 48/294 (16%)
Query: 319 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378
+ L L + A S I + Q+QAVIDAG LP ++ L
Sbjct: 6 HHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSS 65
Query: 379 VGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438
+ EA WAL+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL
Sbjct: 66 P-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWAL 120
Query: 439 GNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTII 498
NI G + VI+ G +P L+ + L+ W + N+ +
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNIASGGNEQIQAVIDA 179
Query: 499 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558
LPAL L+ + + ++ L ++
Sbjct: 180 GALPALVQLLSSPNEQI----------------------LQEALWALSNIAS-------- 209
Query: 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612
G +EQ Q + AL L +H EKI KEA L + +
Sbjct: 210 ------------GGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 140 bits (354), Expect = 1e-37
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 33/243 (13%)
Query: 571 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630
+EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAVIDAG LP +
Sbjct: 42 DGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPAL 101
Query: 631 IANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGF 690
+ L + +L + L N+ +S V G
Sbjct: 102 VQLLSSPN---------------EQILQEALWALSNI------ASGGNEQIQAVIDAGAL 140
Query: 691 TLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK 750
+ Q +EA WA+SN+ SG +Q+ ++ G +P LLS
Sbjct: 141 PAL-------VQLLSSPNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSP 192
Query: 751 DAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIER 810
+ Q++Q L ++N+ + Q ++E G L+K+E LQ+HEN +I K A + +E+
Sbjct: 193 NEQILQEALWALSNIASGGNEQ----KQAVKEAGALEKLEQLQSHENEKIQKEAQEALEK 248
Query: 811 YFS 813
S
Sbjct: 249 LQS 251
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 2e-31
Identities = 70/295 (23%), Positives = 115/295 (38%), Gaps = 59/295 (20%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
+ LP++ L Q A + I S + Q Q V+ AGA+
Sbjct: 2 RGSHHHHHHGSELPQMTQQLNSD-----DMQEQLSATRKFSQILSDGNEQIQAVIDAGAL 56
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRN 476
P ++LL SP+ + ++A+WAL NI G + VI+ G +P L+ + L+
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQE 115
Query: 477 VTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 534
W + N+ + +I+ LPAL L+ + +
Sbjct: 116 ALWALSNIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQI------------------- 154
Query: 535 VSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH 594
+ L ++ G +EQ Q +++ AL LL+
Sbjct: 155 --LQEALWA-LSNIAS--------------------GGNEQIQAVIDAGALPALVQLLSS 191
Query: 595 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA-------NLQKRSCKIL 642
P E+I +EA+W LSNI +G Q QAV +AG L K+ +QK + + L
Sbjct: 192 PNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEAL 246
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 1e-07
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Query: 710 QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMA 769
Q Q A S + S +Q+ ++ G +P LLS + Q++Q L ++N+
Sbjct: 27 QEQLSATRKFSQIL-SDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG 85
Query: 770 DAQVETLANMIEECGGLDKIEMLQNHENVEIYKLA 804
+ Q++ + + G L + L + N +I + A
Sbjct: 86 NEQIQAVI----DAGALPALVQLLSSPNEQILQEA 116
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 200 bits (510), Expect = 2e-59
Identities = 76/198 (38%), Positives = 113/198 (57%), Gaps = 6/198 (3%)
Query: 245 PQISKILVSK-MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303
PQ+ + L S + L + LS + GGN+QIQ VID+G +P+L+ LLS ++ +
Sbjct: 15 PQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA 74
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
L A+ NI +G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAV
Sbjct: 75 LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 423
IDAG LP ++ L + EA WAL+NIASG + Q Q V AGA+ +L
Sbjct: 135 IDAGALPALVQLLSSPN-----EQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQ 189
Query: 424 MSPHSNVCEQAVWALGNI 441
+ + ++A AL +
Sbjct: 190 SHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 190 bits (485), Expect = 6e-56
Identities = 68/212 (32%), Positives = 109/212 (51%), Gaps = 8/212 (3%)
Query: 277 QMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336
+P ++ L+ + + ++LR + I +G +EQ Q +++ AL LL+
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396
P E+I +EA+W LSNI +G Q+QAVIDAG LP ++ L + EA WAL
Sbjct: 66 PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP-----NEQILQEALWAL 120
Query: 397 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 456
+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + + V G
Sbjct: 121 SNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAG 180
Query: 457 VVPPLLSFIK-PDIPISFLRNVTWVIVNLCRN 487
+ L + I + + L +
Sbjct: 181 ALEKLEQLQSHENEKI--QKEAQEALEKLQSH 210
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 2e-41
Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 31/233 (13%)
Query: 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141
H LP +V+ L D A L+ IASG + Q Q V+ AGA+P ++LL
Sbjct: 6 HHHHHGSELPQMVQQLNSPD-QQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64
Query: 142 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201
SP+ + ++A+WAL NI G + VI+ G +P L+ + L+ W + N+
Sbjct: 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQEALWALSNI 123
Query: 202 CRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259
+ +I+ LPAL L+ + +IL
Sbjct: 124 A--SGGNEQIQAVIDAGALPALVQLLSSPNE-------------------------QILQ 156
Query: 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312
+ +WALS + GGN+Q Q V ++G + L L SH+ K+Q + A+ + +
Sbjct: 157 EALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 3e-35
Identities = 56/183 (30%), Positives = 91/183 (49%), Gaps = 5/183 (2%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V+ + + A++ ++S N I+A+I +G LP LV+ L S + EA
Sbjct: 18 VQQLNSPDQQELQSALRKLS-QIASGGNEQIQAVIDAGALPALVQLL-SSPNEQILQEAL 75
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 170
WAL+NIASG + Q Q V+ AGA+P ++LL SP+ + ++A+WAL NI G + VI
Sbjct: 76 WALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVI 135
Query: 171 NMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
+ G +P L+ + P+ I L+ W + N+ + L L L H +
Sbjct: 136 DAGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHEN 193
Query: 230 TSV 232
+
Sbjct: 194 EKI 196
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 131 bits (333), Expect = 3e-35
Identities = 64/237 (27%), Positives = 102/237 (43%), Gaps = 32/237 (13%)
Query: 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180
+P ++ L SP + A+ L I G + VI+ G +P L+
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61
Query: 181 FIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLW 237
+ P+ I L+ W + N+ + + +I+ LPAL L+
Sbjct: 62 LLSSPNEQI--LQEALWALSNIASGGNE--QIQAVIDAGALPALVQLLSS---------- 107
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297
+IL + +WALS + GGN+QIQ VID+G +P+L+ LLS
Sbjct: 108 ---------------PNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 152
Query: 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
++ +L A+ NI +G +EQ Q + AL L +H EKI KEA L + +
Sbjct: 153 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-34
Identities = 64/238 (26%), Positives = 105/238 (44%), Gaps = 35/238 (14%)
Query: 577 QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 636
+ L L P ++ + A+ LS I +G Q+QAVIDAG LP ++ L
Sbjct: 6 HHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSS 65
Query: 637 RSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFT-LFAF 695
+ +IL + L L N+ + Q + V G L
Sbjct: 66 PNEQILQEAL----WALSNIA--------------SGGNEQIQA---VIDAGALPALVQL 104
Query: 696 ISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVI 755
+S Q +EA WA+SN+ SG +Q+ ++ G +P LLS + Q++
Sbjct: 105 LSS--------PNEQILQEALWALSNIA-SGGNEQIQAVIDAGALPALVQLLSSPNEQIL 155
Query: 756 QVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813
Q L ++N+ + Q + ++E G L+K+E LQ+HEN +I K A + +E+ S
Sbjct: 156 QEALWALSNIASGGNEQKQ----AVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 115 bits (290), Expect = 2e-29
Identities = 58/258 (22%), Positives = 98/258 (37%), Gaps = 52/258 (20%)
Query: 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 416
+ LP+++ L + L+ A L+ IASG + Q Q V+ AGA+
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQS-----ALRKLSQIASGGNEQIQAVIDAGAL 56
Query: 417 PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRN 476
P ++LL SP+ + ++A+WAL NI G + VI+ G +P L+ + L+
Sbjct: 57 PALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE-QILQE 115
Query: 477 VTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 534
W + N+ + +I+ LPAL L+ + +
Sbjct: 116 ALWALSNIA--SGGNEQIQAVIDAGALPALVQLLSSPNEQI------------------- 154
Query: 535 VSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH 594
++ L ++ G +EQ Q + AL L +H
Sbjct: 155 ---LQEALWALSNIAS--------------------GGNEQKQAVKEAGALEKLEQLQSH 191
Query: 595 PKEKICKEAVWFLSNITA 612
EKI KEA L + +
Sbjct: 192 ENEKIQKEAQEALEKLQS 209
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 113 bits (286), Expect = 6e-29
Identities = 52/198 (26%), Positives = 86/198 (43%), Gaps = 29/198 (14%)
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 627
++ G +EQ Q +++ AL LL+ P E+I +EA+W LSNI +G Q+QAVIDAG L
Sbjct: 39 IASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGAL 98
Query: 628 PKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAAT 687
P ++ L N +L L +S E++ V
Sbjct: 99 PALVQLLS-----------SPNEQILQEALWALSNIASGGNEQIQA----------VIDA 137
Query: 688 GGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLL 747
G QL+ Q +EA WA+SN+ SG +Q + + G + L
Sbjct: 138 GALPALV-----QLLS--SPNEQILQEALWALSNIA-SGGNEQKQAVKEAGALEKLEQLQ 189
Query: 748 SCKDAQVIQVVLDGINNM 765
S ++ ++ + + + +
Sbjct: 190 SHENEKIQKEAQEALEKL 207
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 3e-21
Identities = 54/244 (22%), Positives = 92/244 (37%), Gaps = 49/244 (20%)
Query: 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 463
+P ++ L SP + A+ L I G + VI+ G +P L+
Sbjct: 2 RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61
Query: 464 FIK-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE--LLPALNILIHHHDTSVSIYLW 520
+ P+ I L+ W + N+ + + +I+ LPAL L+ + +
Sbjct: 62 LLSSPNEQI--LQEALWALSNIASGGN--EQIQAVIDAGALPALVQLLSSPNEQI----- 112
Query: 521 LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVIL 580
++ L ++ G +EQ Q ++
Sbjct: 113 -----------------LQEALWALSNIAS--------------------GGNEQIQAVI 135
Query: 581 NCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCK 640
+ AL LL+ P E+I +EA+W LSNI +G Q QAV +AG L K+ + K
Sbjct: 136 DAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEK 195
Query: 641 ILNK 644
I +
Sbjct: 196 IQKE 199
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210 | Back alignment and structure |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 31/86 (36%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
Query: 73 LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132
++S N I+A+I +G LP LV+ L + + EA WAL+NIASG + Q Q V AGA
Sbjct: 123 IASGGNEQIQAVIDAGALPALVQLLSSPN-EQILQEALWALSNIASGGNEQKQAVKEAGA 181
Query: 133 VPLFLRLLMSPHSNVCEQAVWALGNI 158
+ +L + + ++A AL +
Sbjct: 182 LEKLEQLQSHENEKIQKEAQEALEKL 207
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 176 bits (446), Expect = 6e-47
Identities = 73/445 (16%), Positives = 150/445 (33%), Gaps = 41/445 (9%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V + + L S L S K P LP ++ L ++ AA
Sbjct: 11 VPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAML-GFRLDAVKSNAA 69
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI-IGDGPQLRDYV 169
L ++ +V +P+ + LL P V A AL NI G + +
Sbjct: 70 AYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAI 129
Query: 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
N VP L+ ++ + +T + NL + + + L AL +
Sbjct: 130 KNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEI--VDHALHALTDEVIIPH 187
Query: 230 TSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID-SGVVPSL 288
+ E N + +L +T L ++ ++ + + + G+V +L
Sbjct: 188 SG-------WEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDAL 240
Query: 289 IPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC----DALSHFPALLTHPKEKICKE 344
I ++ + D ++++ NC LS+ E+ +
Sbjct: 241 IFIV---------------QAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEA 285
Query: 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404
A +N + + ++ I+ L++ P + +A A+ N+ +G
Sbjct: 286 APNVANNTGTSPARGYELLFQPEVVRIYISLLKESK----TPAILEASAGAIQNLCAGRW 341
Query: 405 AQTQE----VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 460
+ + A+ LL + H V + A AL N+ D + ++ +I +P
Sbjct: 342 TYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVD-ARNKE-LIGKHAIPN 399
Query: 461 LLSFIKPDIPISFLRNVTWVIVNLC 485
L+ + S ++++
Sbjct: 400 LVKNLPGGQQNSSWNFSEDTVISIL 424
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 125 bits (314), Expect = 4e-30
Identities = 64/478 (13%), Positives = 145/478 (30%), Gaps = 49/478 (10%)
Query: 10 VELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSA 69
+ + R+ P + + ++ ++ + ++ A +
Sbjct: 22 AQHERGSLASLDSLRKGGPPPPNWRQPELPEV---------IAMLGFRLDAVKSNAA-AY 71
Query: 70 RKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ-EVV 128
+ L + + +PVLV L + + A AL NI+ G + +
Sbjct: 72 LQHLCYRNDKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGRDQDNKIAIK 130
Query: 129 AAGAVPLFLRLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD-- 185
VP +RLL ++ E L N+ ++ +++ + I P
Sbjct: 131 NCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH-DSIKMEIVDHALHALTDEVIIPHSG 189
Query: 186 --------------IPISFLRNVTWVIVNLCR----NKDPPPSMSTIIELLPAL--NILI 225
S L N + N+ + +++ L + +
Sbjct: 190 WEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIG 249
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND-QIQMVIDSGV 284
S + + ++ + + + + ++ T +++ V
Sbjct: 250 QKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEV 309
Query: 285 VPSLIPLLSHKEVK-VQTASLRAVGNIVTGTDEQT----QVILNCDALSHFPALLTHPKE 339
V I LL + + AS A+ N+ G + ALS LLT+ E
Sbjct: 310 VRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHE 369
Query: 340 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL---QKVGRIVLRPNLQFEAAWAL 396
++ K A L N+ A+ + +I +P ++ NL Q+ + +
Sbjct: 370 RVVKAASGALRNLAVD--ARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTI 427
Query: 397 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS--NVCEQAVWALGNIIGDGPQLRDYV 452
+ + +++ + + + S + A L I G +
Sbjct: 428 NEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYKELRKPLE 485
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584 | Back alignment and structure |
|---|
Score = 75.8 bits (185), Expect = 3e-14
Identities = 44/455 (9%), Positives = 120/455 (26%), Gaps = 46/455 (10%)
Query: 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP 426
G +I + P Q E + + +P + +L
Sbjct: 1 GSPEFMIGEEVPSDQYYWAPLAQHERGSLASLDSLRKGGPPPPNWRQPELPEVIAMLGFR 60
Query: 427 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486
V A L ++ +++ V + +P L+ + + N+
Sbjct: 61 LDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKK-EVHLGACGALKNISF 119
Query: 487 NKDPPPSMSTI----IELLPALNILIHHHDTSV-----SIYLWLSIIEKNPQISKILVSK 537
+D ++ + L + +L D + LS + I+
Sbjct: 120 GRDQDNKIAIKNCDGVPAL--VRLLRKARDMDLTEVITGTLWNLSSHDSIKME--IVDHA 175
Query: 538 MKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE 597
+ + + + H+ + ++ + N + +
Sbjct: 176 LHALTDEV-IIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD 234
Query: 598 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVL 657
+ ++ + + + V + + L+ S ++ +
Sbjct: 235 GLVDALIFIVQAEIGQKDSDSKLVENC------VCLLRNLSYQVHREIPQAERYQEAAPN 288
Query: 658 LQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAW 717
+ + + + L+ + + +A
Sbjct: 289 VANNTGTSPARGYELLFQPEVVRIYI----------------SLLKESKTP-AILEASAG 331
Query: 718 AISNLTISGNRDQV---AKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVE 774
AI NL + L QE + DLL+ + +V++ + N+ A
Sbjct: 332 AIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNL-----AVDA 386
Query: 775 TLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIE 809
+I + + ++ L + + + D +
Sbjct: 387 RNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVI 421
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 166 bits (421), Expect = 2e-45
Identities = 54/379 (14%), Positives = 119/379 (31%), Gaps = 49/379 (12%)
Query: 14 KNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLL 73
+ + A + ++ + +D AV KL
Sbjct: 2 GHHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDK-NPMPAPVEHQICPAVCVLMKLS 60
Query: 74 SSDKNPPIEALIHSGILPVLVECLERSDR----------PNLQFEAAWALTNIASGTSAQ 123
+++ A+ G L + E L+ L+ A ALTN+ G A
Sbjct: 61 FDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVAN 118
Query: 124 TQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLSF 181
+ + G + + L S ++ + L N+ + + +G V L+
Sbjct: 119 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 178
Query: 182 IKPDIPISFLRNVTWVIVNLC----RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237
S L++V + NL NK ++ + L + L + T+
Sbjct: 179 ALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL--VGTLTYRSQTN------ 230
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTD---GGNDQIQMVIDSGVVPSLIPLLSH 294
+ I+ L ++ D Q++ ++ + +L+ L
Sbjct: 231 ----------------TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274
Query: 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354
+ + + + + N+ + + + + A+S L+ + I + L N+ A
Sbjct: 275 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMA 334
Query: 355 GNQAQVQA---VIDAGLLP 370
A+ + + LP
Sbjct: 335 NRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 164 bits (416), Expect = 1e-44
Identities = 53/357 (14%), Positives = 115/357 (32%), Gaps = 58/357 (16%)
Query: 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 145
H + + + + A L ++ + + G + LL
Sbjct: 30 HEPGMDQDKNPM-PAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCE 87
Query: 146 -----------NVCEQAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFIKPDIPISFLRN 193
+ A AL N+ + + +M G + L++ +K + +
Sbjct: 88 MYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQV 146
Query: 194 VTWVIVNLCRNKDPPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 251
+ V+ NL D S T+ E+ + AL
Sbjct: 147 IASVLRNLSWRADVN-SKKTLREVGSVKALMECALE------------------------ 181
Query: 252 VSKMKILVDTVWALSYLT-DGGNDQIQMVIDSGVVPSLIPLLSHKE-------VKVQTAS 303
V K L + AL L+ ++ + G + L+ L+++ ++
Sbjct: 182 VKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGI 241
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
LR V +++ ++ Q++ + L L I A L N++A N +A+
Sbjct: 242 LRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL 301
Query: 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE---VVAAGAVP 417
D G + + + + +A AL N+ + A+ ++ + ++P
Sbjct: 302 WDMGAVSMLKNLIHSK-----HKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSLP 353
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 141 bits (356), Expect = 9e-37
Identities = 59/362 (16%), Positives = 111/362 (30%), Gaps = 56/362 (15%)
Query: 293 SHKEVKVQTASLRAVGNIVTGTD-EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351
H + L + I + + + + P E AV L
Sbjct: 3 HHHHHHM----LHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMK 58
Query: 352 ITAGNQAQVQAVIDAGLLPKIIANLQ------KVGRIVLRPNLQFEAAWALTNIASGTSA 405
++ + + A+ + G L I LQ + L+ A ALTN+ G A
Sbjct: 59 LSFDEEHR-HAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA 117
Query: 406 QTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLS 463
+ + G + + L S ++ + L N+ + + +G V L+
Sbjct: 118 NKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALME 177
Query: 464 FIKPDIPISFLRNVTWVIVNLC----RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 519
S L++V + NL NK ++ + L + L + T+
Sbjct: 178 CALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL--VGTLTYRSQTN----- 230
Query: 520 WLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVI 579
L+IIE L +S + ++ Q++
Sbjct: 231 TLAIIES--------------GGGILRNVSS-----------------LIATNEDHRQIL 259
Query: 580 LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSC 639
+ L L I A L N++A N +A+ D G + + + +
Sbjct: 260 RENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK 319
Query: 640 KI 641
I
Sbjct: 320 MI 321
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 51/372 (13%), Positives = 110/372 (29%), Gaps = 33/372 (8%)
Query: 145 SNVCEQAVW-ALGNIIGDGPQLRDYVI-NMGVVPPLLSFIK-PDIPISFLRNVTWVIVNL 201
+ + L I ++ + + + + P + V++ L
Sbjct: 2 GHHHHHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQ--ICPAVCVLMKL 59
Query: 202 CRNKDPPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259
+++ + EL L A+ L+ + +
Sbjct: 60 SFDEEHRH---AMNELGGLQAIAELLQVDCEMYG--------------LTNDHYSITLRR 102
Query: 260 DTVWALSYLTDGGNDQIQMVI-DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT 318
AL+ LT G + G + +L+ L + +Q + N+ D +
Sbjct: 103 YAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNS 162
Query: 319 QV-ILNCDALSHFPALLTHP-KEKICKEAVWFLSNITAGNQA-QVQAVIDAGLLPKIIAN 375
+ + ++ KE K + L N++A + G L ++
Sbjct: 163 KKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 222
Query: 376 LQKVGRIVLRPNLQFEAAWALTNIAS---GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 432
L + + L N++S Q + + L+ L S +
Sbjct: 223 LTYRSQTNTLA-IIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVS 281
Query: 433 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 492
A L N+ P+ ++ + +MG V L + I + NL N+
Sbjct: 282 NACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHK-MIAMGSAAALRNLMANRPAKY 340
Query: 493 SMSTIIELLPAL 504
+ I+ +L
Sbjct: 341 KDANIMSPGSSL 352
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 94.1 bits (234), Expect = 8e-21
Identities = 51/398 (12%), Positives = 108/398 (27%), Gaps = 82/398 (20%)
Query: 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 463
+ + + + +P + AV L + D + R + +G + +
Sbjct: 22 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAE 80
Query: 464 FIKPDIP----------ISFLRNVTWVIVNLCRNKDPPPSMSTIIEL---LPALNILIHH 510
++ D I+ R + NL + +T+ + + AL +
Sbjct: 81 LLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA--NKATLCSMKGCMRALVAQLKS 138
Query: 511 HDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP 570
+ + L LS + + +K
Sbjct: 139 ESEDLQQV----------------------IASVLRNLSWRADV-NSKKT---------- 165
Query: 571 GTDEQTQVILNCDALSHFPALLTHP-KEKICKEAVWFLSNITAGNQA-QVQAVIDAGLLP 628
+ ++ KE K + L N++A + G L
Sbjct: 166 --------LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALA 217
Query: 629 KIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATG 688
++ L RS +++ +L NV S+ N + R I +
Sbjct: 218 FLVGTLTYRSQTNTLAIIESGGGILRNV---SSLIATNEDHRQI-----------LRENN 263
Query: 689 GFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLS 748
L + Q + A + NL+ + N L G + +L+
Sbjct: 264 C--LQTLL---QHLK--SHSLTIVSNACGTLWNLS-ARNPKDQEALWDMGAVSMLKNLIH 315
Query: 749 CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGL 786
K + + N++ AN++ L
Sbjct: 316 SKHKMIAMGSAAALRNLMA-NRPAKYKDANIMSPGSSL 352
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 4e-07
Identities = 34/243 (13%), Positives = 73/243 (30%), Gaps = 42/243 (17%)
Query: 571 GTDEQTQVILNCDALSHFPALL-----------THPKEKICKEAVWFLSNITAGNQAQVQ 619
+E + L LL H + + A L+N+T G+ A
Sbjct: 61 FDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120
Query: 620 AVI-DAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQK 678
+ G + ++A L+ S + VL N+ + +V +
Sbjct: 121 TLCSMKGCMRALVAQLKSESEDLQQVIA----SVLRNL-----SWRADVNSKKT------ 165
Query: 679 TSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEG 738
+ G + + T K A+ NL+ ++ +G
Sbjct: 166 -----LREVGS------VKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDG 214
Query: 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLK---MADAQVETLANMIEECGGLDK-IEMLQN 794
+ L+ + +++ +L+ A E ++ E L ++ L++
Sbjct: 215 ALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKS 274
Query: 795 HEN 797
H
Sbjct: 275 HSL 277
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 49.1 bits (117), Expect = 4e-06
Identities = 25/236 (10%), Positives = 65/236 (27%), Gaps = 35/236 (14%)
Query: 575 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI-DAGLLPKIIAN 633
+ + + A L E + + L N++ + + + G + ++
Sbjct: 119 KATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMEC 178
Query: 634 LQKRSCKILNKYLDNNNMVLHNV---LLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGF 690
+ L +V L +S + + A G
Sbjct: 179 ALEVK----------KESTLKSVLSALWNLSAHCTENKADI------------CAVDGAL 216
Query: 691 TLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT--ISGNRDQVAKLVQEGVIPPFCDLLS 748
AF+ + + N++ I+ N D L + + L
Sbjct: 217 ---AFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK 273
Query: 749 CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLA 804
++ + N+ A+ + + G + ++ L + ++ I +
Sbjct: 274 SHSLTIVSNACGTLWNLS----ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 325
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 16/94 (17%), Positives = 34/94 (36%), Gaps = 4/94 (4%)
Query: 712 QKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA 771
++ A A++NLT ++ +G + L + + QV+ + N+ AD
Sbjct: 101 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADV 160
Query: 772 QVETLANMIEECGGLDK-IEMLQNHENVEIYKLA 804
+ + E G + +E + K
Sbjct: 161 NSK---KTLREVGSVKALMECALEVKKESTLKSV 191
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 14/120 (11%), Positives = 35/120 (29%), Gaps = 17/120 (14%)
Query: 712 QKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA 771
A + L S + + + + G + +LL + + A
Sbjct: 49 ICPAVCVLMKL--SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYA-- 104
Query: 772 QVETLANM-----------IEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDEDN 820
L N+ G + + E+ ++ ++ ++ R S D ++
Sbjct: 105 -GMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVL-RNLSWRADVNS 162
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 165 bits (417), Expect = 4e-44
Identities = 62/418 (14%), Positives = 126/418 (30%), Gaps = 34/418 (8%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+P V+ L S Q A+ + + + Q+V G + + LL SP+ NV +
Sbjct: 4 IPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQ 62
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209
A AL N++ + + +S ++ + +T ++ NL +
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122
Query: 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269
+ AL +L + + S V ++ + L L+
Sbjct: 123 ELIA-----DALPVLAD------RVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLS 171
Query: 270 DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329
+ M SG++ SL+ + + + + + ++
Sbjct: 172 SADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR 231
Query: 330 FPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNL 388
+ + + + N + + PK L I NL
Sbjct: 232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNL 291
Query: 389 ---------QFEAAWALTNIASG-----TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQA 434
A AL N+ + + + +P RLL S +S+V
Sbjct: 292 MGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSG 351
Query: 435 VWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISF-----LRNVTWVIVNLCRN 487
L N+ P L + N P + + + L + + + NL +
Sbjct: 352 ASLLSNMSRH-PLLHRVMGNQV-FPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMAS 407
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 6e-24
Identities = 60/420 (14%), Positives = 124/420 (29%), Gaps = 51/420 (12%)
Query: 51 VEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAA 110
V+ R N +Q A A + L + V L R+ +Q +
Sbjct: 50 VDLLRSPNQNVQQAAA-GALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLT 108
Query: 111 WALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN----------------VCEQAVWA 154
L N++S + +E + A A+P+ ++ P S V A
Sbjct: 109 GLLWNLSST--DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGC 166
Query: 155 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISF-----LRNVTWVIVNLCRNKDPPP 209
L N+ + G++ L+++++ + S + N V+ NL D
Sbjct: 167 LRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDA-- 224
Query: 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269
+ T L + +S + S N L
Sbjct: 225 EVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLP---------------EE 269
Query: 270 DGGNDQIQMVIDSGVVPSLIPLLSH------KEVKVQTASLRAVGNIVTGTDEQTQVILN 323
+ + S + + + L+ E + + + L
Sbjct: 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329
Query: 324 CDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL-QKVGRI 382
L LL + + LSN++ + V+ + P++ L G
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNT 387
Query: 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS-NVCEQAVWALGNI 441
++ A + + N+ + ++ ++ + + L S S E A L ++
Sbjct: 388 SNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDM 447
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 98.7 bits (245), Expect = 7e-22
Identities = 55/414 (13%), Positives = 120/414 (28%), Gaps = 47/414 (11%)
Query: 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVI 321
+ + + Q V G + L+ LL VQ A+ A+ N+V +
Sbjct: 23 AYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET 82
Query: 322 LNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL---- 376
+ + +LL +I K+ L N+++ ++ ++ + A LP + +
Sbjct: 83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE--LKEELIADALPVLADRVIIPF 140
Query: 377 -------QKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 429
+ R V+ P + F A L N++S + + +G + L +
Sbjct: 141 SGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDS-LMAYVQNCVA 199
Query: 430 VCEQAVWALGNIIGDGPQLRDYV-INMGVVPPLLSFIKPDIPI--------------SFL 474
++ N + L + + L + +
Sbjct: 200 ASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMN 259
Query: 475 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV-----SIYLWLSIIEKNP- 528
N + N + + LN++ + L+ +
Sbjct: 260 NNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS 319
Query: 529 -QISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSH 587
+S+++ K K + L + + M ++
Sbjct: 320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS----RHPLLHRVMGNQVFPE 375
Query: 588 FPALL------THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635
LL T E I A + + N+ A + + +L II +
Sbjct: 376 VTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCR 429
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 98.4 bits (244), Expect = 1e-21
Identities = 62/498 (12%), Positives = 140/498 (28%), Gaps = 90/498 (18%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKE 344
+P + LS ++ K Q + + + Q + + LL P + + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63
Query: 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404
A L N+ + + + ++ L++ G +Q + L N++S
Sbjct: 64 AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGN----AEIQKQLTGLLWNLSST-- 117
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSN----------------VCEQAVWALGNIIGDGPQL 448
+ +E + A A+P+ ++ P S V A L N+
Sbjct: 118 DELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGR 177
Query: 449 RDYVINMGVVPPLLSFIKPDIPISF-----LRNVTWVIVNLCRNKDPPPSMSTIIELLPA 503
+ G++ L+++++ + S + N V+ NL D E+
Sbjct: 178 QTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLD--------AEVPTR 229
Query: 504 LNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHS 563
L ++ +N K S +
Sbjct: 230 YRQLEYNA--------------RNAYTEKSSTGCFSNKS------------DKMMNNNYD 263
Query: 564 IYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAV-WFLSNITAGNQAQVQAVI 622
+ + + + + DA+ + L+ K+ EA L N+TA +
Sbjct: 264 CPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMS 323
Query: 623 DAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNV----LLQMSVFLQNVEERMIYSSFQK 678
L +++ + + L + N + L MS
Sbjct: 324 QLIGL-------KEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRV--------- 367
Query: 679 TSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEG 738
+ + ++ + A + + NL S +
Sbjct: 368 -----MGNQVFPEVTRLLTSHTGNTSNSED--ILSSACYTVRNLMAS-QPQLAKQYFSSS 419
Query: 739 VIPPFCDLLSCKDAQVIQ 756
++ +L +
Sbjct: 420 MLNNIINLCRSSASPKAA 437
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 96.1 bits (238), Expect = 5e-21
Identities = 57/396 (14%), Positives = 113/396 (28%), Gaps = 40/396 (10%)
Query: 29 LADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKN---------P 79
L + + +E Q + V R N E+Q L S+D+ P
Sbjct: 71 LVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALP 130
Query: 80 PIEALI---HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 136
+ + SG P + F A L N++S + + +G +
Sbjct: 131 VLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDS- 189
Query: 137 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 196
L + ++ N + L + VP ++ + ++ +
Sbjct: 190 LMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLD--AEVPTRYRQLEYNARNAYTEKSST 247
Query: 197 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMK 256
+ +K + + S +I +L+++ K+ K
Sbjct: 248 GCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS--------KKDA 299
Query: 257 ILVDTVWALSYLTDGGND-----QIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIV 311
L AL LT + + +P + LL V + + N+
Sbjct: 300 TLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS 359
Query: 312 TGTDEQTQVILNCDALSHFPALL------THPKEKICKEAVWFLSNITAGNQAQVQAVID 365
++ LL T E I A + + N+ A +
Sbjct: 360 --RHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFS 417
Query: 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS 401
+ +L II + P A L+++ S
Sbjct: 418 SSMLNNIINLCRSSA----SPKAAEAARLLLSDMWS 449
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457 | Back alignment and structure |
|---|
Score = 70.2 bits (171), Expect = 1e-12
Identities = 48/422 (11%), Positives = 126/422 (29%), Gaps = 84/422 (19%)
Query: 416 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475
+P ++ L S + + + + V +G + L+ ++ + +
Sbjct: 4 IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQ-NVQQ 62
Query: 476 NVTWVIVNLC----RNKDPPPSMSTIIELLPALNILIHHHDTSV-----SIYLWLSIIEK 526
+ NL NK + I E + L + + + LS ++
Sbjct: 63 AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLR---RTGNAEIQKQLTGLLWNLSSTDE 119
Query: 527 NPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALS 586
+ ++ + V + + + + +
Sbjct: 120 LKEE--LIADALPVLADRVIIPFSGWCDGNSNMSREVVD--------------------- 156
Query: 587 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ--KRSCKILNK 644
++ A L N+++ + + +GL+ ++A +Q + + +K
Sbjct: 157 ----------PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK 206
Query: 645 YLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFF 704
++N VLHN+ ++ + ++ Y++ + ++
Sbjct: 207 SVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPL 266
Query: 705 P--------------------------QGEFQTQKEAA-WAISNLTISGNR----DQVAK 733
P + + EA A+ NLT S
Sbjct: 267 PEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLI 326
Query: 734 LVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQ 793
++E +P LL ++ V++ ++NM ++ L ++ + +L
Sbjct: 327 GLKEKGLPQIARLLQSGNSDVVRSGASLLSNM-----SRHPLLHRVMGNQVFPEVTRLLT 381
Query: 794 NH 795
+H
Sbjct: 382 SH 383
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 1e-42
Identities = 57/379 (15%), Positives = 118/379 (31%), Gaps = 58/379 (15%)
Query: 2 RRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPEL 61
R RR + L + R + + D M
Sbjct: 118 RGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPM-------------PAPVEHQ 164
Query: 62 QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER----------SDRPNLQFEAAW 111
AV KL +++ A+ G L + E L+ L+ A
Sbjct: 165 ICPAVCVLMKLSFDEEHRH--AMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGM 222
Query: 112 ALTNIASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYV 169
ALTN+ G A + + G + + L S ++ + L N+ + +
Sbjct: 223 ALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTL 282
Query: 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC----RNKDPPPSMSTIIELLPALNILI 225
+G V L+ S L++V + NL NK ++ + L + L
Sbjct: 283 REVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL--VGTLT 340
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD---GGNDQIQMVIDS 282
+ T+ + I+ L ++ D Q++ ++
Sbjct: 341 YRSQTN----------------------TLAIIESGGGILRNVSSLIATNEDHRQILREN 378
Query: 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKIC 342
+ +L+ L + + + + + N+ + + + + A+S L+ + I
Sbjct: 379 NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIA 438
Query: 343 KEAVWFLSNITAGNQAQVQ 361
+ L N+ A A+ +
Sbjct: 439 MGSAAALRNLMANRPAKYK 457
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 150 bits (380), Expect = 4e-39
Identities = 67/438 (15%), Positives = 139/438 (31%), Gaps = 88/438 (20%)
Query: 67 QSARKLLSSDKNPPI-EALIHSGILPVLVECLERSDR-----------PNLQFEAAWALT 114
+R LL+ + ++ SG LP+L++ L +D+ + A+ AL
Sbjct: 48 DMSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107
Query: 115 NIASGTSAQTQEVVAAGAVPL------------------------FLRLLMSPHSNVCEQ 150
NI + + L + +P +
Sbjct: 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICP 167
Query: 151 AVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFL----------RNVTWVIVN 200
AV L + D + R + +G + + ++ D + L R + N
Sbjct: 168 AVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTN 226
Query: 201 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVS-KMKILV 259
L + +T+ + + L+ L S +
Sbjct: 227 LTFGDVA--NKATLCSMKGCMRALVA-----------------------QLKSESEDLQQ 261
Query: 260 DTVWALSYLTDGGNDQIQMVI-DSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDE- 316
L L+ + + + + G V +L+ K+ + L A+ N+ E
Sbjct: 262 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTEN 321
Query: 317 QTQVILNCDALSHFPALLTHP----KEKICKEAVWFLSNIT---AGNQAQVQAVIDAGLL 369
+ + AL+ LT+ I + L N++ A N+ Q + + L
Sbjct: 322 KADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL 381
Query: 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 429
++ +L+ + A L N+++ + + GAV + L+ S H
Sbjct: 382 QTLLQHLKSH-----SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKM 436
Query: 430 VCEQAVWALGNIIGDGPQ 447
+ + AL N++ + P
Sbjct: 437 IAMGSAAALRNLMANRPA 454
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 146 bits (370), Expect = 9e-38
Identities = 53/403 (13%), Positives = 123/403 (30%), Gaps = 51/403 (12%)
Query: 27 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH 86
V L +S + A L ++ ++ + ++ + + H
Sbjct: 87 VLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAH 146
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS- 145
+ + + + A L ++ + + G + LL
Sbjct: 147 EPGMDQDKNPM-PAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEM 204
Query: 146 ----------NVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194
+ A AL N+ GD G + L++ +K + + +
Sbjct: 205 YGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVI 263
Query: 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 254
V+ NL D + + + ++ L+ K
Sbjct: 264 ASVLRNLSWRADV--NSKKTLREVGSVKALMECALEV---------------------KK 300
Query: 255 MKILVDTVWALSYLTDGGND-QIQMVIDSGVVPSLIPLLSHKE-------VKVQTASLRA 306
L + AL L+ + + + G + L+ L+++ ++ LR
Sbjct: 301 ESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRN 360
Query: 307 VGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 366
V +++ ++ Q++ + L L I A L N++A N +A+ D
Sbjct: 361 VSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDM 420
Query: 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE 409
G + + + + +A AL N+ + A+ ++
Sbjct: 421 GAVSMLKNLIHSK-----HKMIAMGSAAALRNLMANRPAKYKD 458
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 2e-33
Identities = 74/493 (15%), Positives = 147/493 (29%), Gaps = 91/493 (18%)
Query: 160 GDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL-- 217
+ +V LLS + +++ ++ + ++D S ++ +
Sbjct: 19 SHMRLTSHLGTKVEMVYSLLSMLGTHDK----DDMSRTLLAMSSSQD---SCISMRQSGC 71
Query: 218 LPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQ 277
LP L L+H +D + ++ AL + D +
Sbjct: 72 LPLLIQLLHGNDKDSVLLGNSRGSKE-------------ARARASAALHNIIHSQPDDKR 118
Query: 278 MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHP 337
+ V+ L +RA + + + P
Sbjct: 119 GRREIRVLHLL-------------EQIRAYCETC-----WEWQEAHEPGMDQDKNPMPAP 160
Query: 338 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR------PNLQFE 391
E AV L + + ++ A+ + G L I LQ + L+
Sbjct: 161 VEHQICPAVCVLMKL-SFDEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRY 219
Query: 392 AAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLR 449
A ALTN+ G A + + G + + L S ++ + L N+ +
Sbjct: 220 AGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSK 279
Query: 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC----RNKDPPPSMSTIIELLPALN 505
+ +G V L+ S L++V + NL NK ++ + L +
Sbjct: 280 KTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFL--VG 337
Query: 506 ILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIY 565
L + T+ L+IIE L +S
Sbjct: 338 TLTYRSQTN-----TLAIIES--------------GGGILRNVSS--------------- 363
Query: 566 MCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG 625
+ ++ Q++ + L L I A L N++A N +A+ D G
Sbjct: 364 --LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMG 421
Query: 626 LLPKIIANLQKRS 638
+ + + +
Sbjct: 422 AVSMLKNLIHSKH 434
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 6e-20
Identities = 58/410 (14%), Positives = 112/410 (27%), Gaps = 98/410 (23%)
Query: 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL---------- 334
V + LLS + R + + + + + + L LL
Sbjct: 31 VEMVYSLLSMLGTHDKDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLL 89
Query: 335 --THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLP---KIIANLQKVGRIVLR---- 385
+ ++ A L NI + + +L +I A +
Sbjct: 90 GNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG 149
Query: 386 ------------PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS----- 428
+ A L ++ + + G + LL
Sbjct: 150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHR-HAMNELGGLQAIAELLQVDCEMYGLT 208
Query: 429 ------NVCEQAVWALGNI-IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 481
+ A AL N+ GD G + L++ +K + + + V+
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESE-DLQQVIASVL 267
Query: 482 VNLCRNKDPPPSMSTIIEL--LPAL-NILIHHHDTSVSIYLWLSIIEKNPQISKILVSKM 538
NL D S T+ E+ + AL + S +
Sbjct: 268 RNLSWRADVN-SKKTLREVGSVKALMECALEVKKEST----------------------L 304
Query: 539 KVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP--- 595
K L+ LS + T+ + + AL+ LT+
Sbjct: 305 KSVLSALWNLSAHC-------------------TENKADICAVDGALAFLVGTLTYRSQT 345
Query: 596 -KEKICKEAVWFLSNIT---AGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641
I + L N++ A N+ Q + + L ++ +L+ S I
Sbjct: 346 NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTI 395
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 66.1 bits (161), Expect = 2e-11
Identities = 49/467 (10%), Positives = 120/467 (25%), Gaps = 110/467 (23%)
Query: 383 VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN------------V 430
+L + + + + L + S + + +G +PL ++LL +
Sbjct: 40 MLGTHDKDDMSRTLLAM-SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEA 98
Query: 431 CEQAVWALGNIIGDGP-----------------------QLRDYVINMGVVPPLLSFIKP 467
+A AL NII P ++ P
Sbjct: 99 RARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMP 158
Query: 468 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIEL--LPALNILIHHHDTSVSIYLWLSIIE 525
+ V++ L +++ + EL L A+ L+ L+
Sbjct: 159 APVEHQICPAVCVLMKLSFDEE---HRHAMNELGGLQAIAELLQVDCEMYG----LTNDH 211
Query: 526 KNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDAL 585
+ + + L L+ + + +
Sbjct: 212 YSITLRRY-------AGMALTNLTFGD-------------------VANKATLCSMKGCM 245
Query: 586 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI-DAGLLPKIIANLQKRSCKILNK 644
A L E + + L N++ + + + G + ++ +
Sbjct: 246 RALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALE-------- 297
Query: 645 YLDNNNMVLHNV---LLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQL 701
L +V L +S + + A G
Sbjct: 298 --VKKESTLKSVLSALWNLSAHCTENKADI------------CAVDGALAFLV-----GT 338
Query: 702 MFFPQGEFQT--QKEAAWAISNLT--ISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQV 757
+ + + + N++ I+ N D L + + L ++
Sbjct: 339 LTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398
Query: 758 VLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLA 804
+ N+ A+ + + G + ++ L + ++ I +
Sbjct: 399 ACGTLWNLS----ARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGS 441
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458 | Back alignment and structure |
|---|
Score = 46.9 bits (111), Expect = 2e-05
Identities = 20/102 (19%), Positives = 44/102 (43%), Gaps = 2/102 (1%)
Query: 25 RNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEAL 84
RNV +T+ED + + + N +++ + + + A + L + + EAL
Sbjct: 359 RNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKD-QEAL 417
Query: 85 IHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126
G + +L + S + +A AL N+ + A+ ++
Sbjct: 418 WDMGAVSMLKNLI-HSKHKMIAMGSAAALRNLMANRPAKYKD 458
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 155 bits (391), Expect = 5e-39
Identities = 70/580 (12%), Positives = 165/580 (28%), Gaps = 46/580 (7%)
Query: 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS 118
+A ++ + +A I + + L D + A+T + +
Sbjct: 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPD-MESKVRVTVAITALLN 276
Query: 119 GTSAQTQEVVAA-GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPP 177
G +VVA G + + L + + A L + + G V
Sbjct: 277 GPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDK-AKALCEQG-VDI 334
Query: 178 LLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237
L + L ++ +
Sbjct: 335 LKRLYHSKND-GIRVRALVGLCKLGSYGGQDAAIRPFGDGAA------------------ 375
Query: 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEV 297
L + E + I L+YLT + +++ D + +L+ L
Sbjct: 376 LKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ 435
Query: 298 KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357
+ N+ ++Q L L K+ I +E +
Sbjct: 436 SCLYGVVTTFVNLCNAYEKQEM-------LPEMIELAKFAKQHIPEEHEL---DDVDFIN 485
Query: 358 AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 417
++ + + G+ + A + N Q A L + + +VV G V
Sbjct: 486 KRITVLANEGITTALCALAK-----TESHNSQELIARVLNAVCGLKELR-GKVVQEGGVK 539
Query: 418 LFLRLLMSPHSNVCEQAVWALGNI-IGDGPQLR-DYVINMGVVPPLLSFIKPDIPISFLR 475
LR+ + A AL I I P++ ++ V+ PLL+ ++ D
Sbjct: 540 ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599
Query: 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV---SIYLWLSIIEKNPQISK 532
+ NL + + + + + + + +++ I
Sbjct: 600 ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKM 659
Query: 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALL 592
+ +V ++L L + + ++ + S +++ L L+
Sbjct: 660 FEGNNDRV--KFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI 717
Query: 593 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA 632
+P + + + N+ + + + + ++ +
Sbjct: 718 ANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSG 757
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 2e-37
Identities = 58/441 (13%), Positives = 124/441 (28%), Gaps = 69/441 (15%)
Query: 35 EDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLV 94
+ K+A+ L+ + +++ A L+ D + + + L+
Sbjct: 372 DGAALKLAEACRRFLIKPG---KDKDIRRWAADGLA-YLTLDAECKEKLIEDKASIHALM 427
Query: 95 ECLERSDRPNLQFEAAWALTNIASGTSAQTQE---------------------------- 126
+ R + + N+ + Q
Sbjct: 428 DLA-RGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINK 486
Query: 127 ----VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI 182
+ G L + N E L + G +LR V+ G V LL
Sbjct: 487 RITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGKVVQEGGVKALLRMA 545
Query: 183 KPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI--IELLPALNILIHHHDTSVSIYLWLSI 240
R+ T + + +P S S ++++ L L+ T++ +
Sbjct: 546 LEGTEKG-KRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF----- 599
Query: 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQ 300
+++ AL+ L Q +I V + L + +
Sbjct: 600 -------------------ESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLT 640
Query: 301 TASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360
A+ + + N+V D N D + L E+ L+ IT+ +
Sbjct: 641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCC 700
Query: 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 420
+ ++ I+ L P +Q + N+ + +++ + L
Sbjct: 701 EKILAIASWLDILHTLIANP----SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLS 756
Query: 421 RLLMSPHSNVCEQAVWALGNI 441
L P + A +
Sbjct: 757 GLGQLPDDTRAKAREVATQCL 777
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 149 bits (376), Expect = 3e-37
Identities = 68/485 (14%), Positives = 148/485 (30%), Gaps = 28/485 (5%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
+++ A D+ Q + L+++ + + +L L S ++
Sbjct: 294 MILAMATTDDELQQR---VACECLIAASSKKDKAKALCEQGVDILKR-LYHSKNDGIRVR 349
Query: 109 AAWALTNIASGTSAQTQEVVAAGA-----VPLFLRLLMSPHSN--VCEQAVWALGNIIGD 161
A L + S R L+ P + + A L + D
Sbjct: 350 ALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLD 409
Query: 162 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPAL 221
+ + + L+ + S L V VNLC + + +IEL
Sbjct: 410 AECKEKLIEDKASIHALMDLARGGNQ-SCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFA 468
Query: 222 NILI---HHHDTSVSIYLWLSIIEKN---PQISKILVSK-MKILVDTVWALSYLTDGGND 274
I H D I ++++ + + ++ L+ + G +
Sbjct: 469 KQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVC-GLKE 527
Query: 275 QIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQV--ILNCDALSHFPA 332
V+ G V +L+ + K + + +A+ I + + + D +
Sbjct: 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN 587
Query: 333 LLTHPKEKICK-EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFE 391
LL + E++ L+N+ + N++ Q +I + KI L + L
Sbjct: 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMED-----HLYLTRA 642
Query: 392 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 451
AA L N+ V L AL I + +
Sbjct: 643 AAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEK 702
Query: 452 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 511
++ + +L + + + +I+N+ + +++ L+ L
Sbjct: 703 ILAIASWLDILHTLIANPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLP 762
Query: 512 DTSVS 516
D + +
Sbjct: 763 DDTRA 767
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-32
Identities = 99/786 (12%), Positives = 233/786 (29%), Gaps = 73/786 (9%)
Query: 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141
E L + + + ++ + + + +T+ V+ VP F+R+L
Sbjct: 43 ELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVERTKGVLTELGVPWFMRVLD 102
Query: 142 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201
H N A + L I+ L++ + + +T ++ ++
Sbjct: 103 QKHENCVSTAQFCLQTILNALSGLKNKPDSKPD-----KELCTRNNREIDTLLTCLVYSI 157
Query: 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV--------- 252
+ +IEL+ +H+ ++ ++E + ++L
Sbjct: 158 TDRTISGAARDGVIELITRN---VHYT----ALEWAERLVEIRG-LCRLLDVCSELEDYK 209
Query: 253 --SKMKILVDTVWALSYLT-----DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLR 305
S M I + S + D+ + + + L +++ +
Sbjct: 210 YESAMDITGSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTV 269
Query: 306 AVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365
A+ ++ G + ++ + + + +++ + + + + +A+ +
Sbjct: 270 AITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCE 329
Query: 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGA-----VPLFL 420
G+ I+ L ++ A L + S
Sbjct: 330 QGV--DILKRLYHSKN----DGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACR 383
Query: 421 RLLMSPHSN--VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVT 478
R L+ P + + A L + D + + + L+ + S L V
Sbjct: 384 RFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQ-SCLYGVV 442
Query: 479 WVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKM 538
VNLC + + +IEL H + I K +++
Sbjct: 443 TTFVNLCNAYEKQEMLPEMIELAKFAK----QHIPEEHELDDVDFINKR----ITVLANE 494
Query: 539 KVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEK 598
+ + L L+ S + + G E ++ + + EK
Sbjct: 495 GITTA-LCALAKTESHNSQELIARVLNAVC--GLKELRGKVVQEGGVKALLRMALEGTEK 551
Query: 599 ICKEAVWFLSN--ITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDN--NNMVLH 654
+ A L+ IT + ++ ++ LQ+ + N N+
Sbjct: 552 GKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASM 611
Query: 655 NVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQG------- 707
N ++ + + ++ Y + L AA MF
Sbjct: 612 NESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLA 671
Query: 708 ------EFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDG 761
+ +T A A++ +T + L + L++ V +
Sbjct: 672 LLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVI 731
Query: 762 INNMLKMADAQVETL--ANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEVEDED 819
I NM+ + + L +++E GL ++ + E+ ERY ++
Sbjct: 732 ILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSDN 791
Query: 820 NLGPQV 825
P V
Sbjct: 792 AEIPDV 797
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810 | Back alignment and structure |
|---|
Score = 97.2 bits (241), Expect = 7e-21
Identities = 44/304 (14%), Positives = 95/304 (31%), Gaps = 30/304 (9%)
Query: 10 VELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQS- 68
L K + + + V A ++ K+ Q ++ A + + + A Q+
Sbjct: 501 CALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGKRHATQAL 560
Query: 69 ARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV 128
AR ++ + ++ L+ L++ FE+ ALTN+AS + Q ++
Sbjct: 561 ARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRII 620
Query: 129 AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIP 187
V LM H + A L N++ ++ + N V L + D
Sbjct: 621 KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEE 680
Query: 188 ISFLRNVTWVIVNLCRNKDPPPSMSTIIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246
+ + + I L L+ LI + +V
Sbjct: 681 TA--TACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRG---------- 728
Query: 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRA 306
+ + + + G + + + ++ ++ L L + A A
Sbjct: 729 ---------------IVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVA 773
Query: 307 VGNI 310
+
Sbjct: 774 TQCL 777
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 4e-32
Identities = 36/255 (14%), Positives = 80/255 (31%), Gaps = 27/255 (10%)
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
S +P E++ + A L ++ +G L R L + +
Sbjct: 38 SQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAG 97
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206
+ +A +G + +++ V+ +G + LL + D + + I L R ++
Sbjct: 98 LRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQE 157
Query: 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266
++ L + K+ V + + L
Sbjct: 158 AGLLQFLRLDGFSVLMRAMQQQVQ-------------------------KLKVKSAFLLQ 192
Query: 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326
L G + + G+V L+ L+ + L A+ ++VT + + +
Sbjct: 193 NLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECR--EP 250
Query: 327 LSHFPALLTHPKEKI 341
LL H + +
Sbjct: 251 ELGLEELLRHRCQLL 265
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 97.8 bits (243), Expect = 2e-22
Identities = 32/242 (13%), Positives = 83/242 (34%), Gaps = 7/242 (2%)
Query: 275 QIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL 334
V+ + P+ + + + +L + ++ D L
Sbjct: 32 SCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYL 91
Query: 335 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAW 394
+ A + + A + V+ G L K++ L + +R A +
Sbjct: 92 EAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVK----ALF 147
Query: 395 ALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN 454
A++ + A + + + +R + + ++ + L N++ P+ + + +
Sbjct: 148 AISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS 207
Query: 455 MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 514
MG+V L++ ++ + F +V + +L + P + E L L+ H
Sbjct: 208 MGMVQQLVALVRTEHS-PFHEHVLGALCSLVTDF--PQGVRECREPELGLEELLRHRCQL 264
Query: 515 VS 516
+
Sbjct: 265 LQ 266
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 96.6 bits (240), Expect = 4e-22
Identities = 38/240 (15%), Positives = 91/240 (37%), Gaps = 14/240 (5%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVP-----LADSTDE-DDIEKMAQVNLDMLVVEAA 54
+R + + ++ Q+R L ++ D D +++ ++L LV
Sbjct: 34 LRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHL--LVGRYL 91
Query: 55 RKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERSDRPNLQFEAAWAL 113
L+ A Q I E ++ G L L+ L+R ++ +A +A+
Sbjct: 92 EAGAAGLRWRAAQLIGTCSQ--NVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAI 149
Query: 114 TNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 173
+ + A + + + +R + + ++ + L N++ P+ + + +MG
Sbjct: 150 SCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 209
Query: 174 VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVS 233
+V L++ ++ + F +V + +L + P + E L L+ H +
Sbjct: 210 MVQQLVALVRTEHS-PFHEHVLGALCSLVTDF--PQGVRECREPELGLEELLRHRCQLLQ 266
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 91.6 bits (227), Expect = 2e-20
Identities = 27/262 (10%), Positives = 70/262 (26%), Gaps = 42/262 (16%)
Query: 391 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
A L ++ +G L R L + + + +A +G + +++
Sbjct: 59 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 118
Query: 451 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 510
V+ +G + LL + D + + I L R ++ ++ L +
Sbjct: 119 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 178
Query: 511 HDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP 570
+ K+K L +
Sbjct: 179 QVQKL---------------------KVKSAFLLQNLLVGHP------------------ 199
Query: 571 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630
E + + + AL+ + + L ++ V+ + L +
Sbjct: 200 ---EHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEE 256
Query: 631 IANLQKRSCKILNKYLDNNNMV 652
+ + + + +Y +
Sbjct: 257 LLRHRCQLLQQHEEYQEELEFC 278
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 78.5 bits (193), Expect = 6e-16
Identities = 37/232 (15%), Positives = 80/232 (34%), Gaps = 31/232 (13%)
Query: 591 LLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNN 650
L + A + + A + V+ G L K++ L + D +
Sbjct: 90 YLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDR----------DACD 139
Query: 651 MVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQ 710
V L +S ++ E L+ GF++ + M Q +
Sbjct: 140 TVRVKALFAISCLVREQEA----------GLLQFLRLDGFSVLM-----RAMQ--QQVQK 182
Query: 711 TQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMAD 770
+ ++A+ + NL + G+ + L G++ L+ + + + VL + +++
Sbjct: 183 LKVKSAFLLQNL-LVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFP 241
Query: 771 AQVETLANMIEECGGL--DKIEMLQNHE-NVEIYKLAYDIIERYFSEVEDED 819
V L + ++LQ HE E + +++ FS D+
Sbjct: 242 QGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPADDS 293
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 78.1 bits (192), Expect = 7e-16
Identities = 27/245 (11%), Positives = 75/245 (30%), Gaps = 19/245 (7%)
Query: 143 PHSNVCEQAVWALGNIIGDGPQLRDYV-INMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201
HS+ + G+ Q++ + + +PP + ++ +L
Sbjct: 8 HHSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADL 67
Query: 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSV---SIYLWLSIIEKNPQISKILV------ 252
C N D + + + + + + L + + I + ++
Sbjct: 68 CENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALR 127
Query: 253 ---------SKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303
+ + V ++A+S L + + L+ + + K++ S
Sbjct: 128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187
Query: 304 LRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363
+ N++ G E + + + AL+ + + L ++ V+
Sbjct: 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247
Query: 364 IDAGL 368
+ L
Sbjct: 248 REPEL 252
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296 | Back alignment and structure |
|---|
Score = 53.1 bits (127), Expect = 2e-07
Identities = 26/223 (11%), Positives = 74/223 (33%), Gaps = 10/223 (4%)
Query: 426 PHSNVCEQAVWALGNIIGDGPQLRDYV-INMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 484
HS+ + G+ Q++ + + +PP + ++ +L
Sbjct: 8 HHSSGLVPRGSHMRGQRGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADL 67
Query: 485 CRNKDPPPSMSTIIELLPALNILIHHHDTSV---SIYLWLSIIEKNPQISKILVSKMKVC 541
C N D + + + + + + L + + I + V +
Sbjct: 68 CENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAI-QEQVLGLGAL 126
Query: 542 SRYLYYLSHNSGPMSCQKKQHSIYM--CVSPGTDEQTQVILNCDALSHFPALLTHPKEKI 599
+ L L ++ + + K +++ C+ + L D S + +K+
Sbjct: 127 RKLLRLLDRDA-CDTVRVK--ALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL 183
Query: 600 CKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKIL 642
++ + L N+ G+ + G++ +++A ++
Sbjct: 184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFH 226
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 108 bits (270), Expect = 1e-26
Identities = 43/224 (19%), Positives = 77/224 (34%), Gaps = 14/224 (6%)
Query: 90 LPVLVECLERSDR-PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 148
L V LE P+ AA + + S + V + L+LL + +V
Sbjct: 10 LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69
Query: 149 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 208
AL N++ + + V + VP LL +K + + +T ++ NL N
Sbjct: 70 RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129
Query: 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268
M + AL L + I + S + + I + L +
Sbjct: 130 NLM-----ITEALLTLTEN------IIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNM 178
Query: 269 TDGGNDQIQMVID-SGVVPSLIPLLSHKEVKVQTASLRAVGNIV 311
+ G D + + G++ SL+ + Q +A N V
Sbjct: 179 SSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDD-KATENCV 221
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 83.8 bits (207), Expect = 3e-18
Identities = 26/196 (13%), Positives = 65/196 (33%), Gaps = 17/196 (8%)
Query: 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVI 321
+ + ++ + V + L+ LL + VQ A A+ N+V ++ +
Sbjct: 31 ATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEV 90
Query: 322 LNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAG--LLPKIIANLQK 378
+ + +L + K+ L N+++ ++ + + +A L II
Sbjct: 91 AELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIPFSG 150
Query: 379 VGRIVLR-------PNLQFEAAWALTNIASGTSAQTQEVVAA-GAVPLFLRLLMSPHSNV 430
++ + L N++S + + + G + + + ++
Sbjct: 151 WPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADY 210
Query: 431 C------EQAVWALGN 440
E V L N
Sbjct: 211 QPDDKATENCVCILHN 226
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 83.1 bits (205), Expect = 6e-18
Identities = 27/215 (12%), Positives = 70/215 (32%), Gaps = 30/215 (13%)
Query: 271 GGNDQIQMVIDSGVVPSLIPLL--SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328
G N ++M + + +L H +A+ + + E + + +
Sbjct: 1 GSNADMEMTL-----ERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGIL 55
Query: 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNL 388
LL E + + L N+ + V + +P+++ L++
Sbjct: 56 KLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTR----DLET 111
Query: 389 QFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS----------------NVCE 432
+ + L N++S + ++ A+ ++ P S ++
Sbjct: 112 KKQITGLLWNLSSNDKL--KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFY 169
Query: 433 QAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFIK 466
L N+ G R + G++ L+ +++
Sbjct: 170 NVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 2e-17
Identities = 24/121 (19%), Positives = 48/121 (39%), Gaps = 3/121 (2%)
Query: 369 LPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 428
L + ++ L+ + P+ AA + + S + V + L+LL +
Sbjct: 10 LERAVSMLEADHML---PSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66
Query: 429 NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488
+V AL N++ + + V + VP LL +K + + +T ++ NL N
Sbjct: 67 DVQRAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSND 126
Query: 489 D 489
Sbjct: 127 K 127
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 77.3 bits (190), Expect = 5e-16
Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 24/197 (12%)
Query: 336 HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA 395
H A F+ + + V + K++ L+ ++Q A
Sbjct: 21 HMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQ-----NEDVQRAVCGA 75
Query: 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVIN 454
L N+ + EV VP L++L +Q L N+ + ++
Sbjct: 76 LRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDK--LKNLMI 133
Query: 455 MGVVPPLLSFI---------------KPDIPISFLRNVTWVIVNLCR-NKDPPPSMSTII 498
+ L I + NVT + N+ D +M
Sbjct: 134 TEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCD 193
Query: 499 ELLPALNILIHHHDTSV 515
L+ +L +
Sbjct: 194 GLIDSLVHYVRGTIADY 210
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 55.0 bits (132), Expect = 2e-08
Identities = 20/151 (13%), Positives = 54/151 (35%), Gaps = 22/151 (14%)
Query: 51 VEAARKDNPELQLLAVQSARKL-LSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
++ + N ++Q + R L + N + +P L++ L+++ + +
Sbjct: 58 LQLLKVQNEDVQRAVCGALRNLVFEDNDN--KLEVAELNGVPRLLQVLKQTRDLETKKQI 115
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS----------------NVCEQAVW 153
L N++S + ++ A+ ++ P S ++
Sbjct: 116 TGLLWNLSSNDKL--KNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTG 173
Query: 154 ALGNIIGDGPQLRDYVINM-GVVPPLLSFIK 183
L N+ G R + G++ L+ +++
Sbjct: 174 CLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 52.6 bits (126), Expect = 1e-07
Identities = 16/180 (8%), Positives = 47/180 (26%), Gaps = 13/180 (7%)
Query: 569 SPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLP 628
E + + + LL E + + L N+ + V + +P
Sbjct: 38 CFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKLEVAELNGVP 97
Query: 629 KIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATG 688
+++ L++ + + + N + + + + +
Sbjct: 98 RLLQVLKQTR----------DLETKKQITGLLWNLSSNDKLKNLMITEALLTLTENIIIP 147
Query: 689 GFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLS 748
+F + N++ +G + A +G+I +
Sbjct: 148 FSGWPEGDYPKAN---GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVR 204
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233 | Back alignment and structure |
|---|
Score = 43.8 bits (103), Expect = 8e-05
Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 6/106 (5%)
Query: 700 QLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVL 759
++ AA I + + ++ Q I LL ++ V + V
Sbjct: 15 SMLEADHMLPSRISAAATFIQHECF-QKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVC 73
Query: 760 DGINNMLKMADAQVETLANMIEECGGLDK-IEMLQNHENVEIYKLA 804
+ N++ + + E G+ + +++L+ ++E K
Sbjct: 74 GALRNLVFEDNDNKLE----VAELNGVPRLLQVLKQTRDLETKKQI 115
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A Length = 588 | Back alignment and structure |
|---|
Score = 73.9 bits (181), Expect = 9e-14
Identities = 59/417 (14%), Positives = 130/417 (31%), Gaps = 48/417 (11%)
Query: 43 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDR 102
+ L D P ++ A + + +++ I +P+ ++
Sbjct: 162 KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEI----IPMFSNLA-SDEQ 216
Query: 103 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162
+++ A A NIA E + A +P + V +
Sbjct: 217 DSVRLLAVEACVNIAQLLPQ---EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQ--- 270
Query: 163 PQLRDYVINMGVVPPLLSFIK---PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLP 219
+ + +VP + +K ++ + V NL + MS ++LP
Sbjct: 271 KAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMS---QILP 327
Query: 220 ALNILIHHHDTSV------SIYLWLSIIEKNPQISKILVSKMKILVDTVW-----ALSYL 268
+ L+ + V I I+ K+ I +L + L D +S L
Sbjct: 328 CIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNL 387
Query: 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328
+ ++P+++ L + +V+ A + + + + + S
Sbjct: 388 DCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNS 444
Query: 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ---KVGRIVLR 385
A L I + A L + + ++PK++A + R+
Sbjct: 445 LCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHAT---IIPKVLAMSGDPNYLHRMT-- 499
Query: 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442
+ + ++ Q++ +P LR+ P +NV +L I
Sbjct: 500 ------TLFCINVLSEVCG---QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIG 547
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 68.7 bits (168), Expect = 8e-13
Identities = 42/351 (11%), Positives = 83/351 (23%), Gaps = 98/351 (27%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
L L+ + +A L AV L + + +
Sbjct: 25 DDELFRLLD-DHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRD 72
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209
+ LG I + D V L + D C+
Sbjct: 73 IGAFILGQ-IKICKKCED-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS 126
Query: 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269
+++ I T+V T +A+S +
Sbjct: 127 P-----KIVEQSQITAFDKSTNVRRA-------------------------TAFAISVIN 156
Query: 270 DGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329
D +P LI LL V+ + A+ +
Sbjct: 157 -----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IRDC 196
Query: 330 FPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQ 389
F +L E++ EA+ LS ++ + + D + + +
Sbjct: 197 FVEMLQDKNEEVRIEAIIGLSYR--KDKRVLSVLCDE----------------LKKNTVY 238
Query: 390 FEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALG 439
+ A + +P+ +L + + A+ L
Sbjct: 239 DDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK 278
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 26/175 (14%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
V I S K + +G I + V + L++ L
Sbjct: 52 GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVF---NILNN--MALNDKSAC 106
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400
+ A+ + + + ++ + N++ A+A++ I
Sbjct: 107 VRATAIEST-----AQRCKKNPIYSPKIVEQSQITAFDK-----STNVRRATAFAISVIN 156
Query: 401 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455
+PL + LL P+ +V A +A+ D +RD + M
Sbjct: 157 D-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEM 200
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 23/140 (16%), Positives = 43/140 (30%), Gaps = 31/140 (22%)
Query: 52 EAAR-----KDNPELQLLAVQSARKLLSSDKNPP-----IEALIHSG---------ILPV 92
A K + + + +DK+ IE+ I+
Sbjct: 73 IGAFILGQIKICKKCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYSPKIVEQ 132
Query: 93 LVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAV 152
N++ A+A++ I +PL + LL P+ +V A
Sbjct: 133 SQITAFDKS-TNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAA 180
Query: 153 WALGNIIGDGPQLRDYVINM 172
+A+ D +RD + M
Sbjct: 181 FAININKYDNSDIRDCFVEM 200
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 Length = 280 | Back alignment and structure |
|---|
Score = 45.6 bits (108), Expect = 3e-05
Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 19/112 (16%)
Query: 55 RKDNPELQLLAVQSARKLLSSDKNPP-----IEALIHSG---ILPVLVECLERSDRPNLQ 106
K NP V+ ++ DK+ A+ +P+L+ L+ + +++
Sbjct: 119 CKKNPIYSPKIVEQSQITAF-DKSTNVRRATAFAISVINDKATIPLLINLLKDPN-GDVR 176
Query: 107 FEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AA+A+ S F+ +L + V +A+ L
Sbjct: 177 NWAAFAININKYDNSD---------IRDCFVEMLQDKNEEVRIEAIIGLSYR 219
|
| >1qgk_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.50A {Homo sapiens} Length = 44 | Back alignment and structure |
|---|
Score = 62.1 bits (151), Expect = 1e-12
Identities = 18/27 (66%), Positives = 22/27 (81%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNV 27
MRRRR EV VELRK K+++ + KRRNV
Sbjct: 17 MRRRRIEVNVELRKAKKDDQMLKRRNV 43
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 68.0 bits (165), Expect = 1e-11
Identities = 110/710 (15%), Positives = 206/710 (29%), Gaps = 220/710 (30%)
Query: 39 EKMAQVNLDMLVVEAARKDNPEL--QLLAVQSARKLLSSDKNPPIEALIHSGILPVLVEC 96
+ + V D V KD ++ +L+ + ++ S + + L
Sbjct: 19 KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSK--DAVSGTL------RLFWT 70
Query: 97 LERSDR--------PNLQFEAAWALTNIAS---GTSAQTQEVVAA-----GAVPLFLRLL 140
L L+ + ++ I + S T+ + +F
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF---- 126
Query: 141 MSPHSNVC-EQAVWALGNIIGDGPQLRD--YVI--NMG------VVPPLLSFIKPDIPIS 189
+ + NV Q L + +LR V+ + V + K +
Sbjct: 127 -AKY-NVSRLQPYLKLRQAL---LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMD 181
Query: 190 FLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-----HDTSVSIYLWLSIIEKN 244
F + W+ + C + + T++E+L L I D S +I L + I+
Sbjct: 182 F--KIFWLNLKNCNSPE------TVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA- 232
Query: 245 PQISKILVSKMK----ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQ 300
++ ++L SK +++ V ++ + + +
Sbjct: 233 -ELRRLLKSKPYENCLLVLLNVQ-----------------NAKAWNAF-------NLSCK 267
Query: 301 ---TASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357
T + V + ++ T + L+ H LT E L +
Sbjct: 268 ILLTTRFKQVTDFLSAA-TTTHISLD-----HHSMTLTPD------EVKSLLLKY-LDCR 314
Query: 358 AQ---VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG 414
Q + + IIA + G N + LT I
Sbjct: 315 PQDLPREVLTTNPRRLSIIAESIRDGLATWD-NWKHVNCDKLTTI--------------- 358
Query: 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFL 474
+ L +L + + R + V PP IP L
Sbjct: 359 -IESSLNVL--------------------EPAEYRKMFDRLSVFPP-----SAHIPTILL 392
Query: 475 RNVTW---------VIVNLCRN-----KDPPPSMSTI----IELLPALNILIHHHDTSVS 516
++ W V+VN K P S +I +EL L H + V
Sbjct: 393 -SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVD 451
Query: 517 IYLWLSIIEKNPQISKILVSKMKVCSRYLY-YLSHNSGPMSCQKKQHSIYMCVSPGTDEQ 575
Y +I + I +Y Y ++ H H +
Sbjct: 452 HY---NIPKTFDSDDLIPPYL----DQYFYSHIGH-----------HLKNIEHPERMTLF 493
Query: 576 TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635
V L+ L ++KI ++ TA N + +L + L
Sbjct: 494 RMVFLDFRFL----------EQKIRHDS-------TAWNAS-------GSILN-TLQQL- 527
Query: 636 KRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVA 685
K Y+ +N+ ++ + FL +EE +I S + T LR+A
Sbjct: 528 ----KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY--TDLLRIA 571
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 60.6 bits (146), Expect = 2e-09
Identities = 100/675 (14%), Positives = 201/675 (29%), Gaps = 190/675 (28%)
Query: 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVW- 263
KD +I+ +I++ S ++ L+ +++ K ++ + V ++ + ++ +
Sbjct: 36 KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEV-LRINYKFL 94
Query: 264 --ALSYLTDGGNDQIQMVIDS-----GVVPSLIPLL---SHKEVKVQTA--SLRAVGNIV 311
+ + +M I+ +K++ A LR N++
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL 154
Query: 312 ----TGTDEQT---QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI 364
G+ + V L+ + W + N + V+
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDF-----------KIFW----LNLKNCNSPETVL 199
Query: 365 DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 424
+ LQK+ + PN + ++ +S + + A RLL
Sbjct: 200 E---------MLQKLLYQ-IDPNWT-----SRSDHSSNIKLRIHSIQAE-----LRRLLK 239
Query: 425 S---PHS-----NVCEQAVW-ALGN-----IIGDGPQLRDYVINMGVVPPLLSFIK---- 466
S + NV W A + Q+ D++ L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT 299
Query: 467 PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEK 526
PD S L CR +D P + T LSII +
Sbjct: 300 PDEVKSLLLKYLD-----CRPQDLPREVLTTNPRR-------------------LSIIAE 335
Query: 527 NPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCV---SPGTDEQTQVILNCD 583
+ + + + N C K I + P E ++ D
Sbjct: 336 -------SIRDGL--ATWDNWKHVN-----CDKLTTIIESSLNVLEP--AEYRKMF---D 376
Query: 584 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILN 643
LS FP P + +W V+ ++ L K S +
Sbjct: 377 RLSVFPPSAHIPTILLSL--IW--------FDVIKSDVMV------VVNKLHKYSL--VE 418
Query: 644 KYLDNNNMVLHNVLLQMSVFLQN--------VEERMIYSSFQKTSPLRVAATGGFTLFAF 695
K + + + ++ L++ V L+N V+ I +F + F ++
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF--YSH 476
Query: 696 ISR-------------FQLMF--FPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVI 740
I F+++F F F QK I D A ++
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDF---RFLEQK----------I--RHDSTAWNASGSIL 521
Query: 741 PPFCDLLS-----CKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH 795
L C + + +++ I + L ++E N+I D + +
Sbjct: 522 NTLQQLKFYKPYICDNDPKYERLVNAILDFLP----KIEE--NLIC-SKYTDLLRIALMA 574
Query: 796 ENVEIYKLAYDIIER 810
E+ I++ A+ ++R
Sbjct: 575 EDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 8e-05
Identities = 45/271 (16%), Positives = 84/271 (30%), Gaps = 75/271 (27%)
Query: 31 DSTDEDDIEKMAQVNLDMLVVEAARKD---NPELQLLAVQSA-RKLLSSDKNPPIEALI- 85
++ E +E + ++ + +R D N +L++ ++Q+ R+LL S L+
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE--NCLLV 249
Query: 86 -----HSGILPVL-VEC----LERSDRPNLQFEAAWALTNIASG------TSAQTQEVV- 128
++ + C R + F +A T+I+ T + + ++
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 129 -------------AAGAVPLFLRL---LMSPHSNVCEQ----AVWALGNIIG------DG 162
P L + + + L II +
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP 368
Query: 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW---------VIVNLCRN-----KDPP 208
+ R + V PP IP L ++ W V+VN K P
Sbjct: 369 AEYRKMFDRLSVFPP-----SAHIPTILL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPK 422
Query: 209 PSMSTI----IELLPALNILIHHHDTSVSIY 235
S +I +EL L H + V Y
Sbjct: 423 ESTISIPSIYLELKVKLENEYALHRSIVDHY 453
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V LI L ++ V+ ++ A+G I G + + ++ L
Sbjct: 79 DERAVEPLIKALKDEDGWVRQSAAVALGQI--GDERAVEPLI---------KALKDEDWF 127
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ A + L I G++ V+ +I A L+ ++ AA AL
Sbjct: 128 VRIAAAFALGEI--GDERAVEPLIKA-----------------LKDEDGWVRQSAADALG 168
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I +L + + AV L
Sbjct: 169 EIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 57.0 bits (138), Expect = 3e-09
Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V LI L ++ V+ A+ A+G I G + A+ L
Sbjct: 48 DERAVEPLIKALKDEDAWVRRAAADALGQI--GDER---------AVEPLIKALKDEDGW 96
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ + A L I G++ V+ +I A L+ ++ AA+AL
Sbjct: 97 VRQSAAVALGQI--GDERAVEPLIKA-----------------LKDEDWFVRIAAAFALG 137
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I AV ++ L V + A ALG I
Sbjct: 138 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEI 170
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 49/271 (18%), Positives = 79/271 (29%), Gaps = 84/271 (30%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+ + ++ L+ D ++ AA+AL I AV ++ L + V
Sbjct: 21 VEMYIKNLQ-DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRR 68
Query: 150 QAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDPP 208
A ALG IGD V PL+ +K D ++R V L + D
Sbjct: 69 AAADALGQ-IGDER----------AVEPLIKALKDED---GWVRQ--SAAVALGQIGDE- 111
Query: 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268
+ L + D V I +AL +
Sbjct: 112 -------RAVEPLIKALKDEDWFVRIA-------------------------AAFALGEI 139
Query: 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALS 328
D V LI L ++ V+ ++ A+G I G + +
Sbjct: 140 G-----------DERAVEPLIKALKDEDGWVRQSAADALGEI--GGER---------VRA 177
Query: 329 HFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359
L K AV +L + N
Sbjct: 178 AMEKLAETGTGFARKVAVNYLETHKSFNHHH 208
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 9e-08
Identities = 34/164 (20%), Positives = 51/164 (31%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V I L V+ A+ A+G I G + A+ L
Sbjct: 17 DPEKVEMYIKNLQDDSYYVRRAAAYALGKI--GDER---------AVEPLIKALKDEDAW 65
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ + A L I G++ V+ +I A L+ ++ AA AL
Sbjct: 66 VRRAAADALGQI--GDERAVEPLIKA-----------------LKDEDGWVRQSAAVALG 106
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I AV ++ L V A +ALG I
Sbjct: 107 QIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 21/102 (20%)
Query: 65 AVQSARKLLSSDKNPPI-----EALIHSG---ILPVLVECLERSDRPNLQFEAAWALTNI 116
AV+ K L D++ + +AL G + L++ L+ D ++ AA AL I
Sbjct: 51 AVEPLIKALK-DEDAWVRRAAADALGQIGDERAVEPLIKALKDED-GWVRQSAAVALGQI 108
Query: 117 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AV ++ L V A +ALG I
Sbjct: 109 GD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 139
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 45.4 bits (108), Expect = 2e-05
Identities = 23/127 (18%), Positives = 45/127 (35%), Gaps = 31/127 (24%)
Query: 51 VEAARKDNPELQLLAVQSARKL-----------LSSDKNPP-----IEALIHSG---ILP 91
++A + ++ ++ A + ++ D++ AL G +
Sbjct: 56 IKALKDEDAWVRRAAADALGQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDERAVE 115
Query: 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQA 151
L++ L+ D ++ AA+AL I AV ++ L V + A
Sbjct: 116 PLIKALKDED-WFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSA 163
Query: 152 VWALGNI 158
ALG I
Sbjct: 164 ADALGEI 170
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 8e-05
Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 24/110 (21%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
+++A + ++ +++ A + ++ + + L++ L+ D ++
Sbjct: 116 PLIKALKDEDWFVRIAAAFALGEI----GDERA--------VEPLIKALKDED-GWVRQS 162
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AA AL I +L + + AV L
Sbjct: 163 AADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 201
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 57.3 bits (139), Expect = 2e-09
Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V LI L ++ V+ ++ A+G I G + + ++ L
Sbjct: 74 DERAVEPLIKALKDEDGWVRQSAAVALGQI--GDERAVEPLI---------KALKDEDWF 122
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ A + L I G++ V+ +I A L+ ++ AA AL
Sbjct: 123 VRIAAAFALGEI--GDERAVEPLIKA-----------------LKDEDGWVRQSAADALG 163
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I +L + + AV L
Sbjct: 164 EIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 6e-09
Identities = 35/164 (21%), Positives = 55/164 (33%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V LI L ++ V+ A+ A+G I G + A+ L
Sbjct: 43 DERAVEPLIKALKDEDAWVRRAAADALGQI--GDER---------AVEPLIKALKDEDGW 91
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ + A L I G++ V+ +I A L+ ++ AA+AL
Sbjct: 92 VRQSAAVALGQI--GDERAVEPLIKA-----------------LKDEDWFVRIAAAFALG 132
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I AV ++ L V + A ALG I
Sbjct: 133 EIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEI 165
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 4e-08
Identities = 34/164 (20%), Positives = 51/164 (31%), Gaps = 44/164 (26%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
D V I L V+ A+ A+G I G + A+ L
Sbjct: 12 DPEKVEMYIKNLQDDSYYVRRAAAYALGKI--GDER---------AVEPLIKALKDEDAW 60
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
+ + A L I G++ V+ +I A L+ ++ AA AL
Sbjct: 61 VRRAAADALGQI--GDERAVEPLIKA-----------------LKDEDGWVRQSAAVALG 101
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
I AV ++ L V A +ALG I
Sbjct: 102 QIGD-----------ERAVEPLIKALKDEDWFVRIAAAFALGEI 134
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 3e-07
Identities = 31/145 (21%), Positives = 51/145 (35%), Gaps = 32/145 (22%)
Query: 29 LADSTDEDDIEKMAQV--NLDMLVVEAA-----RKDNPELQLLAVQSARKLLSSDKNPPI 81
TD + +E + + V AA + + AV+ K L D++ +
Sbjct: 7 HHHHTDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDER----AVEPLIKALK-DEDAWV 61
Query: 82 -----EALIHSG---ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAV 133
+AL G + L++ L+ D ++ AA AL I AV
Sbjct: 62 RRAAADALGQIGDERAVEPLIKALKDED-GWVRQSAAVALGQIGD-----------ERAV 109
Query: 134 PLFLRLLMSPHSNVCEQAVWALGNI 158
++ L V A +ALG I
Sbjct: 110 EPLIKALKDEDWFVRIAAAFALGEI 134
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 44.2 bits (105), Expect = 6e-05
Identities = 15/110 (13%), Positives = 37/110 (33%), Gaps = 24/110 (21%)
Query: 49 LVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFE 108
+++A + ++ +++ A + ++ + A+ L++ L+ D ++
Sbjct: 111 PLIKALKDEDWFVRIAAAFALGEI----GDE--RAV------EPLIKALKDED-GWVRQS 157
Query: 109 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AA AL I +L + + AV L
Sbjct: 158 AADALGEIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLETH 196
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 7e-05
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 12/69 (17%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+ L++ L+ D ++ AA+AL I AV ++ L V +
Sbjct: 109 VEPLIKALKDED-WFVRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQ 156
Query: 150 QAVWALGNI 158
A ALG I
Sbjct: 157 SAADALGEI 165
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 55.9 bits (134), Expect = 1e-08
Identities = 42/248 (16%), Positives = 85/248 (34%), Gaps = 27/248 (10%)
Query: 18 EETLQKRRNVPLADSTDEDDIE-KMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSD 76
EE R + + ++ I K + L L+ E D + A+ + +
Sbjct: 5 EEEFDIREALANGEHLEKILIMAKYDESVLKKLI-ELLDDDLWTVVKNAISIIMVI--AK 61
Query: 77 KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 136
+ + +L L L++S+ L E A A +A + +P+
Sbjct: 62 TREDL----YEPMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE-----LVKSMIPVL 112
Query: 137 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTW 196
+AL I P L ++ +LS + ++ L
Sbjct: 113 FANYRIGDEKTKINVSYALEEIAKANPMLMASIVRD--FMSMLSSKNREDKLTAL----N 166
Query: 197 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV---SIYLWLSIIEKNPQISKILVS 253
I + N S + LP + L+H D V ++ + + N ++ K+++
Sbjct: 167 FIEAMGEN-----SFKYVNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVIK 221
Query: 254 KMKILVDT 261
+++ L DT
Sbjct: 222 RLEELNDT 229
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} Length = 253 | Back alignment and structure |
|---|
Score = 45.1 bits (106), Expect = 4e-05
Identities = 30/198 (15%), Positives = 54/198 (27%), Gaps = 38/198 (19%)
Query: 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICK 343
V+ LI LL V ++ + I ++ + +L L F L + +
Sbjct: 33 VLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPML--KKL--FSLLKKSEAIPLTQ 88
Query: 344 EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL------------------- 384
E + V+++I L +K V
Sbjct: 89 EIAKAFGQMAKEKPELVKSMIPV-LFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR 147
Query: 385 ---------RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAV 435
+ A + + + +P + LL V AV
Sbjct: 148 DFMSMLSSKNREDKLTALNFIEAMGENSFK-----YVNPFLPRIINLLHDGDEIVRASAV 202
Query: 436 WALGNIIGDGPQLRDYVI 453
AL ++ +LR VI
Sbjct: 203 EALVHLATLNDKLRKVVI 220
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 7e-08
Identities = 34/267 (12%), Positives = 78/267 (29%), Gaps = 27/267 (10%)
Query: 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI-- 182
+ ++ + R + + N +Q V + NI + G V +L ++
Sbjct: 451 KYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLAN 509
Query: 183 KPDIPISFLRNVTWVIVNLCRNKDPP--PSMSTIIELLPALNILIHHHDTSVSIYLWLSI 240
K DI + + +P + + +P L L+ L
Sbjct: 510 KQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDE 569
Query: 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQ-----MVIDSGVVPSLIPLLSHK 295
K + L+ AL+ L + +V ++ L+ +
Sbjct: 570 QIKLTDNYEALL-----------ALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDE 618
Query: 296 EVKVQTASLRAVGNIVTGTDEQTQVILN------CDALSHFPALLTHPKEKICKEAVWFL 349
V +Q ++L + N+++ N + LL + +
Sbjct: 619 NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIF 678
Query: 350 SNITAGNQAQVQAVIDAGLLPKIIANL 376
+NI + ++ L + +
Sbjct: 679 ANIATTIPLIAKELLTKKELIENAIQV 705
|
| >1qgr_B Protein (importin alpha-2 subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} Length = 27 | Back alignment and structure |
|---|
Score = 47.7 bits (113), Expect = 1e-07
Identities = 17/26 (65%), Positives = 21/26 (80%)
Query: 2 RRRRNEVTVELRKNKREETLQKRRNV 27
RRRR EV VELRK K+++ + KRRNV
Sbjct: 1 RRRRIEVNVELRKAKKDDQMLKRRNV 26
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* Length = 852 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 3e-07
Identities = 63/454 (13%), Positives = 141/454 (31%), Gaps = 34/454 (7%)
Query: 89 ILPVLVECLER---SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 145
+LP ++ L+ ++ L IA G + +P ++ L +
Sbjct: 356 LLPHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLPE-LIPHLIQCLSDKKA 414
Query: 146 NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205
V W L ++ LL I L
Sbjct: 415 LVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRV-QEAACSAFATLEEEA 473
Query: 206 DPP--PSMSTIIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTV 262
P ++ I++ L+ A + + H + +Y + + + +++L+ +
Sbjct: 474 CTELVPYLAYILDTLVFAFS--KYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPL 531
Query: 263 WALSYLTDGGNDQIQMVID--SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQV 320
+ + + +++ S V +L V + V +
Sbjct: 532 IQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQ 591
Query: 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVG 380
+A P + A+ LS + G ++ ++ + ++ +
Sbjct: 592 PDQYEA----------PDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK 641
Query: 381 RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440
P ++ + L ++ + +A +P+ L +VC A WA+G
Sbjct: 642 ----MPEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISVCNNATWAIGE 696
Query: 441 IIGD-GPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRNKDP--PPSMST 496
I G +++ Y+ V+ L+ I P+ P + L N I L P +
Sbjct: 697 ISIQMGIEMQPYI--PMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQ 754
Query: 497 IIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQ 529
I +L + + + + ++I NP
Sbjct: 755 FIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPS 788
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 49.2 bits (118), Expect = 3e-07
Identities = 19/101 (18%), Positives = 34/101 (33%), Gaps = 20/101 (19%)
Query: 65 AVQSARKLLSSDKNPPI-----EAL--IHSGILPVLVECLERSDRPNLQFEAAWALTNIA 117
+ ++ D+N + AL + L+E L ++ ++ AAW + N
Sbjct: 13 GLVPRGSHMA-DENKWVRRDVSTALSRMGDEAFEPLLESLS-NEDWRIRGAAAWIIGNFQ 70
Query: 118 SGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 158
AV ++LL V A +L I
Sbjct: 71 D-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 48.4 bits (116), Expect = 6e-07
Identities = 20/162 (12%), Positives = 42/162 (25%), Gaps = 45/162 (27%)
Query: 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340
S + ++ + V+ A+ + +A L++ +
Sbjct: 10 HSSGLVPRGSHMADENKWVRRDVSTALSRM------------GDEAFEPLLESLSNEDWR 57
Query: 341 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR---PNLQFEAAWALT 397
I A W + N ++ V+ +I L ++ AA +L
Sbjct: 58 IRGAAAWIIGNF--QDERAVEPLIKL-----------------LEDDSGFVRSGAARSLE 98
Query: 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439
I +L + + AV L
Sbjct: 99 QIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 129
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 4e-05
Identities = 18/120 (15%), Positives = 38/120 (31%), Gaps = 34/120 (28%)
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
L + + + + ++ LS + G++A + ++++ L
Sbjct: 12 SGLVPRGSHMADENKWVRRDVSTALSRM--GDEA-FEPLLES-----------------L 51
Query: 385 R---PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
++ AAW + N AV ++LL V A +L I
Sbjct: 52 SNEDWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI 100
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 7e-05
Identities = 11/67 (16%), Positives = 20/67 (29%), Gaps = 12/67 (17%)
Query: 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 149
+ L++ LE ++ AA +L I +L + +
Sbjct: 75 VEPLIKLLEDDS-GFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARK 122
Query: 150 QAVWALG 156
AV L
Sbjct: 123 VAVNYLE 129
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A Length = 861 | Back alignment and structure |
|---|
Score = 52.1 bits (124), Expect = 7e-07
Identities = 66/454 (14%), Positives = 137/454 (30%), Gaps = 70/454 (15%)
Query: 89 ILPVLVECLE---RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 145
IL ++E +E +D + A A +I G + A+P L L+
Sbjct: 366 ILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYVHQALPSILNLMNDQSL 425
Query: 146 NVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204
V E W +G I + GVV L ++ ++ N +W I+NL
Sbjct: 426 QVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHPKVA--TNCSWTIINLVEQ 483
Query: 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWA 264
++ LI + ++ A
Sbjct: 484 LAEATPSPIYNFYPALVDGLIGAANRI--------------------DNEFNARASAFSA 523
Query: 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324
L+ + + D + S + ++ L ++ N +T D Q+ L
Sbjct: 524 LTTMVEYATDTVAETSAS-ISTFVMDKLGQ--------TMSVDENQLTLEDAQSLQELQS 574
Query: 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384
+ L+ A++ + + ++ ++
Sbjct: 575 NILTVLAAVIRKSPSSV------------------------EPVADMLMGLFFRLLEKKD 610
Query: 385 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII-G 443
++ + +A++ +A+ ++ + P L+ L S V AV + +I
Sbjct: 611 SAFIEDDVFYAISALAASLGKGFEKYLET-FSPYLLKALNQVDSPVSITAVGFIADISNS 669
Query: 444 DGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVT-WVIVNLCRN--KDPPPSMSTIIEL 500
R Y ++ L I L+ V ++ N D P ++ I+ L
Sbjct: 670 LEEDFRRYSDA--MMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMAL 727
Query: 501 L-PALNILIHHHDTSVSIY---LWLSIIEKNPQI 530
A N + Y + ++++ I
Sbjct: 728 CVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGI 761
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A Length = 1230 | Back alignment and structure |
|---|
Score = 47.0 bits (110), Expect = 3e-05
Identities = 93/703 (13%), Positives = 203/703 (28%), Gaps = 62/703 (8%)
Query: 18 EETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSS-- 75
++T + + D+ ++ + + +V+A K E + Q +L+
Sbjct: 403 KQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELV 462
Query: 76 DKNPPIEALIHSGILPVLVECL-ERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 134
+ P ++P ++ L ++S NL+ +A L I S Q VP
Sbjct: 463 NVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVP 522
Query: 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194
+ + P + +A+ ++ V+ PL D
Sbjct: 523 PVVACVGDPFYKITSEALLVTQQLVK-------------VIRPLDQPSSFDATPYIKDLF 569
Query: 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 254
T I L I + + + + S +E+ L
Sbjct: 570 TCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITRLT-- 627
Query: 255 MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT 314
TV AL+ + + VP L L + ++ +L A+ ++
Sbjct: 628 ------TVKALTLIAGSPLKIDLRPVLGEGVPILASFLRKNQRALKLGTLSALDILIKNY 681
Query: 315 DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA 374
+ + L P L++ + + A+ FL+ + + + + + +L ++I
Sbjct: 682 SDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGS-ILNELI- 739
Query: 375 NLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN----- 429
+V P LQ A A+ + + LR+L P +
Sbjct: 740 ------GLVRSPLLQGGALSAMLDFFQALVVTGTNNLGY---MDLLRMLTGPVYSQSTAL 790
Query: 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489
+Q+ +++ + + V + S + + + D
Sbjct: 791 THKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHID 850
Query: 490 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCS--RYLYY 547
+ +L A + ++ S L + P+ ++ ++ +YL
Sbjct: 851 LSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLPFVLQEITSQPKRQYLLL 910
Query: 548 LSHNSGPMSCQKKQHSIY--------MCVSPGTDEQT-QVILNC----------DALSHF 588
S S Y + +E T V+ C L
Sbjct: 911 HSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAECLGKLTLIDPETLLPRL 970
Query: 589 PALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDN 648
L V + + + + ++ + + L+ + L
Sbjct: 971 KGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLKN-CIGDFLKTLEDPDLNVRRVALVT 1029
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFT 691
N HN + L V + + + +R G F
Sbjct: 1030 FNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFK 1072
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A Length = 876 | Back alignment and structure |
|---|
Score = 44.9 bits (105), Expect = 1e-04
Identities = 61/460 (13%), Positives = 140/460 (30%), Gaps = 53/460 (11%)
Query: 84 LIHSGILPVLVECLE---RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL 140
I+P ++ ++ ++ + A A I G + + A+P + L+
Sbjct: 358 CCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELM 417
Query: 141 MSPHSNVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199
P V + A W +G I + V ++ L+ + + ++ NV W
Sbjct: 418 KDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVA--SNVCWAFS 475
Query: 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259
+L ++ E PA L + V L + + + + S + L+
Sbjct: 476 SLAEAAYEAADVADDQE-EPATYCLSSSFELIVQK-LLETTDRPDGHQNNLRSSAYESLM 533
Query: 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQ 319
+ V + D V ++ L L+ +I + +D
Sbjct: 534 EIV------KNSAKDCYPAVQK--TTLVIMERLQQ--------VLQMESHIQSTSDRIQF 577
Query: 320 VILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV 379
L + +L + + + + + + L+
Sbjct: 578 NDLQSLLCATLQNVLRKVQHQDALQISDVV----------------------MASLLRMF 615
Query: 380 GRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439
+Q +A A++ + + + + A L + L VC AV +G
Sbjct: 616 QSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVG 675
Query: 440 NI-IGDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNVTWVIVNLCRN--KDPPPSMS 495
++ + + V+ LL + ++ S + V ++ + +
Sbjct: 676 DLCRALQSNIIPFCDE--VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLE 733
Query: 496 TIIE-LLPALNILIHHHDTSVSIYLWLSIIEKNPQISKIL 534
++ L A + D + YL + I+
Sbjct: 734 VVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIV 773
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 845 | |||
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 3now_A | 810 | UNC-45 protein, SD10334P; armadillo repeat, HSP90, | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 1jdh_A | 529 | Beta-catenin; beta-catenin, protein-protein comple | 100.0 | |
| 2z6h_A | 644 | Catenin beta-1, beta-catenin; C-terminal domain, a | 100.0 | |
| 2z6g_A | 780 | B-catenin; FULL-length, beta-catenin, cell adhesio | 100.0 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 100.0 | |
| 2jdq_A | 450 | Importin alpha-1 subunit; transport, PB2 subunit, | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 3ul1_B | 510 | Importin subunit alpha-2; arm repeat, armadillo re | 100.0 | |
| 3tpo_A | 529 | Importin subunit alpha-2; nuclear import, protein | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 3l6x_A | 584 | Catenin delta-1; catenin, armadillo, ARM, JMD, CE | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 1xm9_A | 457 | Plakophilin 1; armadillo repeat, cell adhesion; 2. | 100.0 | |
| 4b8j_A | 528 | Importin subunit alpha-1A; transport protein, nucl | 100.0 | |
| 3nmz_A | 458 | APC variant protein; protein-protein complex, arma | 100.0 | |
| 1wa5_B | 530 | Importin alpha subunit; nuclear transport/complex, | 100.0 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.96 | |
| 3nmw_A | 354 | APC variant protein; ARMADIILO repeats domain, cel | 99.95 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.93 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.92 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.92 | |
| 4hxt_A | 252 | De novo protein OR329; structural genomics, PSI-bi | 99.92 | |
| 4db8_A | 252 | Armadillo-repeat protein; solenoid repeat, de novo | 99.91 | |
| 3opb_A | 778 | SWI5-dependent HO expression protein 4; heat and a | 99.91 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.9 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.89 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.88 | |
| 4fdd_A | 852 | Transportin-1; heat repeats, karyopherin, nuclear | 99.87 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.87 | |
| 4db6_A | 210 | Armadillo repeat protein; solenoid repeat, armadil | 99.86 | |
| 1xqr_A | 296 | HSPBP1 protein; armadillo repeat, superhelical twi | 99.85 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.83 | |
| 1b3u_A | 588 | Protein (protein phosphatase PP2A); scaffold prote | 99.82 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.82 | |
| 3tt9_A | 233 | Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | 99.8 | |
| 2bpt_A | 861 | Importin beta-1 subunit; nuclear transport, nucleo | 99.79 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.79 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.79 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.77 | |
| 3grl_A | 651 | General vesicular transport factor P115; vesicle t | 99.75 | |
| 1qgr_A | 876 | Protein (importin beta subunit); transport recepto | 99.74 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.72 | |
| 2vgl_B | 591 | AP-2 complex subunit beta-1; cytoplasmic vesicle, | 99.69 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.67 | |
| 1u6g_C | 1230 | TIP120 protein, CAND1; cullin repeat, heat repeat, | 99.6 | |
| 1w63_A | 618 | Adapter-related protein complex 1 gamma 1 subunit; | 99.55 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.53 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.51 | |
| 1oyz_A | 280 | Hypothetical protein YIBA; structural genomics, PS | 99.51 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.42 | |
| 1ibr_B | 462 | P95, importin beta-1 subunit, nuclear factor; smal | 99.34 | |
| 2vgl_A | 621 | Adaptor protein complex AP-2, alpha 2 subunit; cyt | 99.21 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.2 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.19 | |
| 3ltm_A | 211 | Alpha-REP4; protein engineering, heat-like repeat, | 99.16 | |
| 3ltj_A | 201 | Alpharep-4; protein engineering, heat-like repeat, | 99.15 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.97 | |
| 4gmo_A | 684 | Putative uncharacterized protein; ARM, heat, solen | 98.82 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.7 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.55 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.55 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.5 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.49 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.44 | |
| 2db0_A | 253 | 253AA long hypothetical protein; heat repeats, hel | 98.43 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 98.39 | |
| 2x1g_F | 971 | Cadmus; transport protein, developmental protein, | 98.36 | |
| 1wa5_C | 960 | Importin alpha RE-exporter; nuclear transport/comp | 98.29 | |
| 3tjz_B | 355 | Coatomer subunit gamma; protein trafficking, golgi | 98.28 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.25 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.22 | |
| 2qk2_A | 242 | LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2 | 98.16 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.15 | |
| 1ho8_A | 480 | Vacuolar ATP synthase subunit H; heat repeat, hydr | 98.14 | |
| 3b2a_A | 265 | TON_1937, putative uncharacterized protein; heat-r | 98.12 | |
| 2x19_B | 963 | Importin-13; nuclear transport, protein transport; | 98.07 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 98.05 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.99 | |
| 1te4_A | 131 | Conserved protein MTH187; methanobacterium thermoa | 97.98 | |
| 2qk1_A | 249 | Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h | 97.97 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.9 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 97.88 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.84 | |
| 4hat_C | 1023 | Exportin-1; heat repeat, nuclear export, RAN-ranbp | 97.75 | |
| 3m1i_C | 1049 | Exportin-1; heat repeat, GTP-binding, nucleotide-b | 97.74 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.46 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.44 | |
| 3dad_A | 339 | FH1/FH2 domain-containing protein 1; formin, FHOD1 | 97.36 | |
| 3ibv_A | 980 | Exportin-T; karyopherin, heat repeat, cytoplasm, n | 97.17 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 97.1 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 97.04 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 96.36 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 96.12 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 96.01 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 96.0 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 95.77 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 95.68 | |
| 2of3_A | 266 | ZYG-9; multifunctional macromolecule, kinetochore, | 95.58 | |
| 4ffb_C | 278 | Protein STU2; tubulin fold, heat repeats, cytoskel | 95.47 | |
| 3gjx_A | 1073 | Exportin-1; transport, cytoplasm, nucleus, RNA-bin | 95.37 | |
| 3oc3_A | 800 | Helicase MOT1, MOT1; regulation of transcription, | 95.1 | |
| 1lrv_A | 244 | LRV, leucine-rich repeat variant; leucine-rich rep | 94.78 | |
| 2fv2_A | 268 | RCD1 required for cell differentiation1 homolog; a | 94.09 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 93.82 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 93.75 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 93.15 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 92.95 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 92.84 | |
| 3gs3_A | 257 | Symplekin, LD45768P; helix-turn-helix heat repeat | 92.48 | |
| 3u0r_A | 507 | Apoptosis inhibitor 5; heat repeat, armadillo repe | 91.77 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 91.23 | |
| 1upk_A | 341 | MO25 protein; transferase, armadillo; HET: MSE; 1. | 91.17 | |
| 2f31_A | 233 | Diaphanous protein homolog 1; formin,MDIA1, protei | 90.44 | |
| 3ebb_A | 304 | Phospholipase A2-activating protein; armadillo rep | 89.67 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 89.1 | |
| 3eg5_B | 383 | Protein diaphanous homolog 1; protein-protein comp | 89.01 | |
| 3o2t_A | 386 | Symplekin; heat repeat, scaffold, protein binding; | 88.17 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 87.52 | |
| 3l9t_A | 240 | Putative uncharacterized protein SMU.31; hypotheti | 86.63 | |
| 3a6p_A | 1204 | Exportin-5; exportin-5, RANGTP, nuclearexport, imp | 86.56 | |
| 1lsh_A | 1056 | Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro | 85.64 | |
| 2bnx_A | 386 | Diaphanous protein homolog 1; autoinhibition, acti | 85.01 | |
| 3c2g_A | 619 | SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev | 84.7 | |
| 1x5b_A | 163 | Signal transducing adaptor molecule 2; VHS domain, | 81.95 |
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-60 Score=546.95 Aligned_cols=490 Identities=49% Similarity=0.842 Sum_probs=386.7
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCCCCCChh------hHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHc
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDED------DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLS 74 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~~~~~~~------~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~ 74 (845)
|||||++++++|||+||+|.++|||++......... ..+......+++++ +.++++|++.+..|+..++++++
T Consensus 27 ~r~~R~~~~v~lRk~kr~e~l~krR~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lv-~~l~s~d~~~q~~a~~~~rklLs 105 (529)
T 3tpo_A 27 MRRRRIEVNVELRKAKKDEQMLKRRNVSSFPDDATSPLQENRNNQGTVNWSVEDIV-KGINSNNLESQLQATQAARKLLS 105 (529)
T ss_dssp -----------------CCSCSCCCCCC---------------CGGGSSCCHHHHH-HHHTSSCHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhccCCCCCcccccChhhhccchhhhHHHHHHHHH-HHhcCCCHHHHHHHHHHHHHHHc
Confidence 799999999999999999999999987533211111 11223456789999 99999999999999999999999
Q ss_pred CCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHH
Q psy12605 75 SDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWA 154 (845)
Q Consensus 75 ~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~ 154 (845)
.+.+++++.+++.|++|.||++|+.++++.+|..|+|+|+++++++++++..+++.|+||.|+.+|.+++++++++|+|+
T Consensus 106 ~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~a 185 (529)
T 3tpo_A 106 REKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWA 185 (529)
T ss_dssp SSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHH
T ss_pred CCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHH
Confidence 98889999999999999999999777889999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCChhhHHHHHhcCChhhHHhhhcCCC----CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCc
Q psy12605 155 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI----PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 230 (845)
Q Consensus 155 L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~ 230 (845)
|+||+.+++++|+.+.+.|++++|+.++..+. ...+.+.++|++++++++..+........+++|.|++++.++++
T Consensus 186 L~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~ 265 (529)
T 3tpo_A 186 LGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDP 265 (529)
T ss_dssp HHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCH
T ss_pred HHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcH
Confidence 99999999999999999999999999997643 34678899999999999998888888889999999999999999
Q ss_pred hhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHH
Q psy12605 231 SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNI 310 (845)
Q Consensus 231 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl 310 (845)
+ ++.+++|+|.+++.+..+..+.+.+.|+++.|+.+|.+++..++.+|+++|+|+
T Consensus 266 ~-------------------------v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl 320 (529)
T 3tpo_A 266 E-------------------------VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNI 320 (529)
T ss_dssp H-------------------------HHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHH
T ss_pred H-------------------------HHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHH
Confidence 8 999999999999999988888999999999999999999999999999999999
Q ss_pred hcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHH
Q psy12605 311 VTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF 390 (845)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~ 390 (845)
+.+++..+..+++.|+++.|+.+|.++++.+++.|+|+|+|++.+++.....
T Consensus 321 ~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~---------------------------- 372 (529)
T 3tpo_A 321 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQ---------------------------- 372 (529)
T ss_dssp TTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHH----------------------------
T ss_pred HccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHH----------------------------
Confidence 9999999999999999999999999988888888888888876554443332
Q ss_pred HHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCC
Q psy12605 391 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP 470 (845)
Q Consensus 391 ~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~ 470 (845)
T Consensus 373 -------------------------------------------------------------------------------- 372 (529)
T 3tpo_A 373 -------------------------------------------------------------------------------- 372 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhcc
Q psy12605 471 ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSH 550 (845)
Q Consensus 471 ~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~ 550 (845)
T Consensus 373 -------------------------------------------------------------------------------- 372 (529)
T 3tpo_A 373 -------------------------------------------------------------------------------- 372 (529)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHH
Q psy12605 551 NSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 630 (845)
Q Consensus 551 ~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L 630 (845)
+++.|++|.|
T Consensus 373 ----------------------------------------------------------------------v~~~g~i~~L 382 (529)
T 3tpo_A 373 ----------------------------------------------------------------------VVNHGLVPFL 382 (529)
T ss_dssp ----------------------------------------------------------------------HHHTTHHHHH
T ss_pred ----------------------------------------------------------------------HHhcCcHHHH
Confidence 3344445555
Q ss_pred HHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCcc
Q psy12605 631 IANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQ 710 (845)
Q Consensus 631 ~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 710 (845)
+.++ .+++++
T Consensus 383 v~lL----------------------------------------------------------------------~~~~~~ 392 (529)
T 3tpo_A 383 VGVL----------------------------------------------------------------------SKADFK 392 (529)
T ss_dssp HHHH----------------------------------------------------------------------HSSCHH
T ss_pred HHHh----------------------------------------------------------------------cCCCHH
Confidence 5544 344556
Q ss_pred chhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHhChHHH
Q psy12605 711 TQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA--QVETLANMIEECGGLDK 788 (845)
Q Consensus 711 ~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~--~~~~~~~~~~e~g~~~~ 788 (845)
++++|+|+|+|++..+++++...+++.|++++|+++|+..|++++..++++|.+|++.++. ..+.+...|+++||+++
T Consensus 393 v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ 472 (529)
T 3tpo_A 393 TQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDK 472 (529)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccChHHHHHHHHHCCcHHH
Confidence 7778888888888777889999999999999999999999999999999999999998765 35678889999999999
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhcCcccC-CCCCCCCCCCCCcccCCCCCCCCCCCCC
Q psy12605 789 IEMLQNHENVEIYKLAYDIIERYFSEVED-EDNLGPQVTDGGFELDQNPSIPNEGFKF 845 (845)
Q Consensus 789 L~~l~~~~~~~v~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (845)
|+.|++|+|.+++++|..+|++||..+|+ |++..|+.++++|.|++++.+| +||.|
T Consensus 473 ie~Lq~~~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~f 529 (529)
T 3tpo_A 473 IEALQRHENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP-GTFNF 529 (529)
T ss_dssp HTGGGGCSSHHHHHHHHHHHHHHC----------------------------------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCccccccccCCCCCCcccccCCCCCCC-CCCCC
Confidence 99999999999999999999999987654 4567899999999998877655 78998
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-54 Score=493.29 Aligned_cols=485 Identities=47% Similarity=0.801 Sum_probs=376.4
Q ss_pred hHHHHHHhhhhhHHHHHhhcCCCCCCCCCh-h---hHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccH
Q psy12605 6 NEVTVELRKNKREETLQKRRNVPLADSTDE-D---DIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI 81 (845)
Q Consensus 6 ~~~~~~lrk~kr~~~~~~~R~~~~~~~~~~-~---~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~ 81 (845)
.....++|+++++....+++.....+.... . ......+..++++| +.++|+|++.|+.|+..+|++++.++++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~v-~~l~s~d~~~q~~a~~~~rklls~e~~ppi 93 (510)
T 3ul1_B 15 GSGMLETAAALFERNHMDSPDLGTDDDDLAMADIGSNQGTVNWSVEDIV-KGINSNNLESQLQATQAARKLLSREKQPPI 93 (510)
T ss_dssp --------------------------------------CCSSCCHHHHH-HHHTSSCHHHHHHHHHHHHHHHTCSSCCCH
T ss_pred CcccHHHHHHHHHhhccCCccccCCccccchhhhccccchhhhhHHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCchH
Confidence 334556677666666665554433222111 1 11122455799999 999999999999999999999999989999
Q ss_pred HHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC
Q psy12605 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 82 ~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~ 161 (845)
+.++++|+||.||++|+.++++.+|..|+|+|++++++++++++.+++.|+||.|+++|++++++++++|+|+|+||+.+
T Consensus 94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d 173 (510)
T 3ul1_B 94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGD 173 (510)
T ss_dssp HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence 99999999999999997778899999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCC----CHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHH
Q psy12605 162 GPQLRDYVINMGVVPPLLSFIKPDI----PISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~~Lv~ll~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~ 237 (845)
+++.|+.+.+.|++++|+.++..+. ...+.+.++|++++++++..+........+++|.|++++.+++++
T Consensus 174 ~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~------ 247 (510)
T 3ul1_B 174 GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE------ 247 (510)
T ss_dssp CHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHH------
T ss_pred CHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHH------
Confidence 9999999999999999999997643 346788999999999999988888888899999999999999998
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ 317 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 317 (845)
++..++|+|.+++....+..+.+.+.|+++.|+.+|.+++..++.+++++|+|++.+++..
T Consensus 248 -------------------v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~ 308 (510)
T 3ul1_B 248 -------------------VLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQ 308 (510)
T ss_dssp -------------------HHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred -------------------HHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHH
Confidence 9999999999999999888888999999999999999999999999999999999999999
Q ss_pred HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHH
Q psy12605 318 TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALT 397 (845)
Q Consensus 318 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~ 397 (845)
+..+++.|+++.|+.+|.++++.+++.|+|+|+|++.++....+
T Consensus 309 ~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~------------------------------------ 352 (510)
T 3ul1_B 309 TQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQ------------------------------------ 352 (510)
T ss_dssp HHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHH------------------------------------
T ss_pred HHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHH------------------------------------
Confidence 99999999999999999988888888888888777555443322
Q ss_pred HHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHH
Q psy12605 398 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 477 (845)
Q Consensus 398 ~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~ 477 (845)
T Consensus 353 -------------------------------------------------------------------------------- 352 (510)
T 3ul1_B 353 -------------------------------------------------------------------------------- 352 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccc
Q psy12605 478 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSC 557 (845)
Q Consensus 478 ~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 557 (845)
T Consensus 353 -------------------------------------------------------------------------------- 352 (510)
T 3ul1_B 353 -------------------------------------------------------------------------------- 352 (510)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhh
Q psy12605 558 QKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKR 637 (845)
Q Consensus 558 ~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 637 (845)
.+++.|++|.|++++
T Consensus 353 --------------------------------------------------------------~v~~~g~i~~Lv~lL--- 367 (510)
T 3ul1_B 353 --------------------------------------------------------------QVVNHGLVPFLVGVL--- 367 (510)
T ss_dssp --------------------------------------------------------------HHHHTTHHHHHHHHH---
T ss_pred --------------------------------------------------------------HHHhcCCHHHHHHHH---
Confidence 233444555555554
Q ss_pred hhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHH
Q psy12605 638 SCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAW 717 (845)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 717 (845)
.++++++|++|+|
T Consensus 368 -------------------------------------------------------------------~~~~~~v~~~Aa~ 380 (510)
T 3ul1_B 368 -------------------------------------------------------------------SKADFKTQKEAAW 380 (510)
T ss_dssp -------------------------------------------------------------------HSSCHHHHHHHHH
T ss_pred -------------------------------------------------------------------cCCCHHHHHHHHH
Confidence 3455677778888
Q ss_pred HHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHhChHHHHHhhhcC
Q psy12605 718 AISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA--QVETLANMIEECGGLDKIEMLQNH 795 (845)
Q Consensus 718 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~--~~~~~~~~~~e~g~~~~L~~l~~~ 795 (845)
+|+|++..+++++...+++.|++++|+++|+..|++++..++++|.+|++.++. ..+.+...|+++||+++|+.|++|
T Consensus 381 aL~Nl~~~~~~~~~~~L~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~~~~~~~~~~~~~~~iee~ggl~~ie~Lq~~ 460 (510)
T 3ul1_B 381 AITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH 460 (510)
T ss_dssp HHHHHHHHCCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHTTHHHHHHHGGGC
T ss_pred HHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHhccchHHHHHHHHHcCcHHHHHHHHcC
Confidence 888888777888999999999999999999999999999999999999998765 356788899999999999999999
Q ss_pred CCHHHHHHHHHHHHHhcCcccC-CCCCCCCCCCCCcccCCCCCCCCCCCCC
Q psy12605 796 ENVEIYKLAYDIIERYFSEVED-EDNLGPQVTDGGFELDQNPSIPNEGFKF 845 (845)
Q Consensus 796 ~~~~v~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 845 (845)
+|.+++++|..+|++||..+|+ |++..|+...++|.|++++.+| .||+|
T Consensus 461 ~n~~i~~~A~~iie~yf~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 510 (510)
T 3ul1_B 461 ENESVYKASLNLIEKYFSVEEEEDQNVVPETTSEGFAFQVQDGAP-GTFNF 510 (510)
T ss_dssp SSHHHHHHHHHHHHHHCC---------------------------------
T ss_pred CCHHHHHHHHHHHHHHCCCccccccccCCCCCccccccCCCCCCC-CCCCC
Confidence 9999999999999999987754 4557889999999999877755 78998
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-48 Score=447.36 Aligned_cols=464 Identities=49% Similarity=0.787 Sum_probs=372.7
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCCCCC--C--hhhHHHHhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCC
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADST--D--EDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSD 76 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~~~~--~--~~~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~ 76 (845)
||+||++++++|||+||+|.+.|||++...... + .+.........++.++ +.+.++++..+..|+..|+++++..
T Consensus 27 ~r~~r~~~~~~lrk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~l~~lv-~~L~s~~~~~~~~A~~~L~~l~s~~ 105 (528)
T 4b8j_A 27 GRRRREDNMVEIRKSRREESLLKKRREGLQAQAPVPASAATGVDKKLESLPAMI-GGVYSDDNNLQLEATTQFRKLLSIE 105 (528)
T ss_dssp CCCCC-----------------CCCC----------------------CHHHHH-HHHTSSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhccCCCcccccccccccchhhhHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHhcCC
Confidence 799999999999999999999999997432111 0 0111123456799999 8999999999999999999998877
Q ss_pred CCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHH
Q psy12605 77 KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 156 (845)
Q Consensus 77 ~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~ 156 (845)
.++....++..|++|.|+++|+.++++.+|..|+++|.+++.++++++..+++.|++|.|+.+|.++++++++.|+|+|+
T Consensus 106 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~ 185 (528)
T 4b8j_A 106 RSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALG 185 (528)
T ss_dssp SSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred CCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 66778999999999999999965445999999999999999988999999999999999999999999999999999999
Q ss_pred HhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHH
Q psy12605 157 NIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236 (845)
Q Consensus 157 nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~ 236 (845)
+|+.+++.++..+.+.|+++.|+.++..+.+..+++.++|+|.+++.+. +........+++|.|+.++.+.++.
T Consensus 186 ~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~----- 259 (528)
T 4b8j_A 186 NVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGK-PQPSFEQTRPALPALARLIHSNDEE----- 259 (528)
T ss_dssp HHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSS-SCCCHHHHTTHHHHHHHHTTCCCHH-----
T ss_pred HHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-CCCcHHHHHHHHHHHHHHHCCCCHH-----
Confidence 9999989999999999999999999966667899999999999999987 4556667789999999999998888
Q ss_pred HHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh
Q psy12605 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
++..++|+|.+++....+..+.+.+.|+++.|+.+|.++++.++..|+++|++++.+++.
T Consensus 260 --------------------v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~ 319 (528)
T 4b8j_A 260 --------------------VLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDA 319 (528)
T ss_dssp --------------------HHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHH
T ss_pred --------------------HHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHH
Confidence 999999999999998888888888999999999999999999999999999999998888
Q ss_pred hHHHHhcCCccchhhHhhcCC-chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHH
Q psy12605 317 QTQVILNCDALSHFPALLTHP-KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA 395 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~ 395 (845)
..+.+++.|+++.|+.+|.+. ++.++..|+|+|+|++.+.+.....+
T Consensus 320 ~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~-------------------------------- 367 (528)
T 4b8j_A 320 QTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAV-------------------------------- 367 (528)
T ss_dssp HHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHH--------------------------------
T ss_pred HHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHH--------------------------------
Confidence 888999999999999999988 88888888888888755443332222
Q ss_pred HHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHH
Q psy12605 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLR 475 (845)
Q Consensus 396 L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 475 (845)
T Consensus 368 -------------------------------------------------------------------------------- 367 (528)
T 4b8j_A 368 -------------------------------------------------------------------------------- 367 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCc
Q psy12605 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPM 555 (845)
Q Consensus 476 ~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 555 (845)
T Consensus 368 -------------------------------------------------------------------------------- 367 (528)
T 4b8j_A 368 -------------------------------------------------------------------------------- 367 (528)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhh
Q psy12605 556 SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635 (845)
Q Consensus 556 ~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~ 635 (845)
++.|++|.|++++
T Consensus 368 ------------------------------------------------------------------~~~~~i~~L~~lL- 380 (528)
T 4b8j_A 368 ------------------------------------------------------------------INAGIIGPLVNLL- 380 (528)
T ss_dssp ------------------------------------------------------------------HHTTCHHHHHHHH-
T ss_pred ------------------------------------------------------------------HHCCCHHHHHHHH-
Confidence 2334455555544
Q ss_pred hhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHH
Q psy12605 636 KRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEA 715 (845)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 715 (845)
.+.+++++.+|
T Consensus 381 ---------------------------------------------------------------------~~~~~~v~~~a 391 (528)
T 4b8j_A 381 ---------------------------------------------------------------------QTAEFDIKKEA 391 (528)
T ss_dssp ---------------------------------------------------------------------HHSCHHHHHHH
T ss_pred ---------------------------------------------------------------------hcCCHHHHHHH
Confidence 22345666677
Q ss_pred HHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHH-------HHHHHHHHHHhChHHH
Q psy12605 716 AWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQ-------VETLANMIEECGGLDK 788 (845)
Q Consensus 716 ~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~-------~~~~~~~~~e~g~~~~ 788 (845)
+|+|+|++..++++....+++.|++++|+.+|...|++++..++++|.+|++.++.. .++|...+.+.|+++.
T Consensus 392 ~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~~~d~~v~~~al~~L~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 471 (528)
T 4b8j_A 392 AWAISNATSGGSHDQIKYLVSEGCIKPLCDLLICPDIRIVTVCLEGLENILKVGETDKTLAAGDVNVFSQMIDEAEGLEK 471 (528)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhhcccccccHHHHHHHHCCcHHH
Confidence 777777775567788888889999999999999999999999999999999987662 2358899999999999
Q ss_pred HHhhhcCCCHHHHHHHHHHHHHhcCcccCCC
Q psy12605 789 IEMLQNHENVEIYKLAYDIIERYFSEVEDED 819 (845)
Q Consensus 789 L~~l~~~~~~~v~~~a~~~l~~~~~~~~~~~ 819 (845)
|..|++|++++++++|.+++++||+.++++|
T Consensus 472 l~~L~~~~~~~v~~~a~~il~~~~~~e~~~~ 502 (528)
T 4b8j_A 472 IENLQSHDNNEIYEKAVKILEAYWMDEEDDT 502 (528)
T ss_dssp HHHGGGCSSHHHHHHHHHHHHHHCC------
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHCCCccccc
Confidence 9999999999999999999999999877665
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-46 Score=434.37 Aligned_cols=349 Identities=49% Similarity=0.762 Sum_probs=297.3
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCC----CCCChh--------hHHHHhhhcHHHHHHHHHcCCChHHHHHHHHH
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLA----DSTDED--------DIEKMAQVNLDMLVVEAARKDNPELQLLAVQS 68 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~----~~~~~~--------~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~ 68 (845)
|||||++.+++|||+||++.+.|||++... ++.++. ..+......++.++ +.|.++++..+..|+..
T Consensus 32 ~~~~r~~~~~~~rk~~r~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lv-~~L~s~~~~~~~~A~~~ 110 (530)
T 1wa5_B 32 LRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMT-QQLNSDDMQEQLSATVK 110 (530)
T ss_dssp CCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHH-HHHSCSSHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhhcCCccccccccCCchhhhhhhhhhhhhhhHHHHHHHH-HHHcCCCHHHHHHHHHH
Confidence 699999999999999999999999998542 111111 11113456789999 89999999999999999
Q ss_pred HHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHH
Q psy12605 69 ARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 148 (845)
Q Consensus 69 l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~ 148 (845)
|+++++...++..+.+++.|++|.|+++|+.++++.+|..|+++|++++.++++++..+++.|++|.|+.+|++++++++
T Consensus 111 L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr 190 (530)
T 1wa5_B 111 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 190 (530)
T ss_dssp HHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHH
T ss_pred HHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 99998876566778899999999999999644489999999999999999888899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC
Q psy12605 149 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 228 (845)
Q Consensus 149 ~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 228 (845)
+.|+|+|++++.+++..+..+...|+++.|+.++.+. +..+++.|+|+|.+++.+.++........+++|.|+.++.++
T Consensus 191 ~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~-~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~ 269 (530)
T 1wa5_B 191 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 269 (530)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC
T ss_pred HHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccC-CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCC
Confidence 9999999999999889999999999999999999874 668999999999999998756666777889999999999998
Q ss_pred CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHH
Q psy12605 229 DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVG 308 (845)
Q Consensus 229 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~ 308 (845)
++. ++..++|+|.+++...++..+.+.+.|+++.|+.+|.++++.++..|+++|+
T Consensus 270 d~~-------------------------v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~ 324 (530)
T 1wa5_B 270 DTE-------------------------TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 324 (530)
T ss_dssp CHH-------------------------HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred CHH-------------------------HHHHHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHH
Confidence 888 9999999999999988887888889999999999999999999999999999
Q ss_pred HHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHh
Q psy12605 309 NIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANL 376 (845)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL 376 (845)
+++.+++...+.+.+.|+++.|+.+|.+.+..++..|+|+|++++.+.+...+.+++.++++.|+.++
T Consensus 325 ~l~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL 392 (530)
T 1wa5_B 325 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLL 392 (530)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH
Confidence 99998888888889999999999999998889999999999988766554444444444444444433
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-44 Score=415.95 Aligned_cols=521 Identities=14% Similarity=0.103 Sum_probs=428.4
Q ss_pred hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHH-HcCChHHHH
Q psy12605 59 PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVV-AAGAVPLFL 137 (845)
Q Consensus 59 ~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~-~~g~i~~L~ 137 (845)
+..|..+..++.++...-.....+.....-.-..+-..+ ..++.+-...|+|+++++..+.++....++ ..|++|.|+
T Consensus 218 ~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li 296 (810)
T 3now_A 218 GSSSTIASVCLARIYENMYYDEAKARFTDQIDEYIKDKL-LAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMIL 296 (810)
T ss_dssp TTHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHH-SSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHh-ccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHH
Confidence 457788888888776544321222222111122222334 345667789999999999999999988877 689999999
Q ss_pred HhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC--CC-CCh--h
Q psy12605 138 RLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD--PP-PSM--S 212 (845)
Q Consensus 138 ~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~--~~-~~~--~ 212 (845)
.++.++++.++++|+|++++++.+ +++|+.+++.|+ +.|+.++.++ +..++..|+++|+++..... +. +.+ .
T Consensus 297 ~Ll~s~~~~~q~~A~~al~~aa~~-~~~R~~I~~~gv-~~L~~Ll~s~-~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g 373 (810)
T 3now_A 297 AMATTDDELQQRVACECLIAASSK-KDKAKALCEQGV-DILKRLYHSK-NDGIRVRALVGLCKLGSYGGQDAAIRPFGDG 373 (810)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHTTS-HHHHHTTHHHHH-HHHHHHTTCS-CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTT
T ss_pred HHhCCCCHHHHHHHHHHHHHHcCC-cHHHHHHHHcCc-HHHHHHHcCC-CHHHHHHHHHHHHHhccccccCccccchhhc
Confidence 999999999999999999998865 889999999885 9999999866 45788999999999975431 22 222 2
Q ss_pred HHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHh
Q psy12605 213 TIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 290 (845)
...++++.|++++.++ |++ ++..|+|+|+||+...+...+...+.|+++.|+.
T Consensus 374 ~i~~Lv~~l~~lL~~~~~d~~-------------------------v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~ 428 (810)
T 3now_A 374 AALKLAEACRRFLIKPGKDKD-------------------------IRRWAADGLAYLTLDAECKEKLIEDKASIHALMD 428 (810)
T ss_dssp HHHHHHHHHHHHHHCSSCCSS-------------------------HHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCCHH-------------------------HHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHH
Confidence 3567789999999987 788 9999999999999887777666667899999999
Q ss_pred hccCCchhhHHHHHHHHHHHhcCCh-----------------------------hhH---HHHhcCCccchhhHhhcCCc
Q psy12605 291 LLSHKEVKVQTASLRAVGNIVTGTD-----------------------------EQT---QVILNCDALSHFPALLTHPK 338 (845)
Q Consensus 291 lL~~~~~~v~~~al~~L~nl~~~~~-----------------------------~~~---~~i~~~~~l~~L~~lL~~~~ 338 (845)
+|++++..++..|+++|+|++.+.+ ..+ +.+++.|++|.|+.++++++
T Consensus 429 LL~s~d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s 508 (810)
T 3now_A 429 LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES 508 (810)
T ss_dssp HHHTTCGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCC
T ss_pred HhCCCChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCC
Confidence 9999999999999999999998652 122 67889999999999999999
Q ss_pred hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC-ChHhHHH-HHHcCCh
Q psy12605 339 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG-TSAQTQE-VVAAGAV 416 (845)
Q Consensus 339 ~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~-l~~~g~i 416 (845)
+.+++.|+|+|.|++ .+++.+..+++.|++|+|+.++.++ ++..+..|+|+|.+++.+ +++.... ....|++
T Consensus 509 ~~vqe~Aa~aL~NLA-~d~~~r~~Vv~~Gaip~Lv~LL~s~-----~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aI 582 (810)
T 3now_A 509 HNSQELIARVLNAVC-GLKELRGKVVQEGGVKALLRMALEG-----TEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582 (810)
T ss_dssp HHHHHHHHHHHHHHH-TSHHHHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTH
T ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHCCCHHHHHHHHccC-----CHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHH
Confidence 999999999999997 4577889999999999999999875 688999999999999864 4433210 0124699
Q ss_pred HHHHHhhCCCCH-HHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChh
Q psy12605 417 PLFLRLLMSPHS-NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 495 (845)
Q Consensus 417 ~~Lv~lL~~~~~-~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~ 495 (845)
+.|+++|.++.. ..+..|+++|+|++..++..+..+.+.|+++.|+.++.+.. ..+++.++|+++||+.+..
T Consensus 583 ppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~-~~Vq~~A~~~L~NLa~~~~------ 655 (810)
T 3now_A 583 RPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH-LYLTRAAAQCLCNLVMSED------ 655 (810)
T ss_dssp HHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC-TTHHHHHHHHHHHHTTSHH------
T ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC-HHHHHHHHHHHHHHhCChH------
Confidence 999999986644 44568999999999999999999999999999999998654 5789999999999985431
Q ss_pred HHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhh
Q psy12605 496 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQ 575 (845)
Q Consensus 496 ~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~ 575 (845)
.
T Consensus 656 -------------------------------------------------------------------------------~ 656 (810)
T 3now_A 656 -------------------------------------------------------------------------------V 656 (810)
T ss_dssp -------------------------------------------------------------------------------H
T ss_pred -------------------------------------------------------------------------------H
Confidence 0
Q ss_pred HHHHH-hCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHH-CCChHHHHHHhhhhhhhhhhhcccCCchhH
Q psy12605 576 TQVIL-NCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID-AGLLPKIIANLQKRSCKILNKYLDNNNMVL 653 (845)
Q Consensus 576 ~~~l~-~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~ 653 (845)
...+. ..|.++.|+.++++++..++++|+|+|+|++.+++..++.+++ .|++|.|++++
T Consensus 657 ~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL------------------- 717 (810)
T 3now_A 657 IKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLI------------------- 717 (810)
T ss_dssp HHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHH-------------------
T ss_pred HHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHH-------------------
Confidence 11222 2577889999999999999999999999999988888999998 89999999998
Q ss_pred HHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHH
Q psy12605 654 HNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAK 733 (845)
Q Consensus 654 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~ 733 (845)
.++++++++.|+|++.|++ .+++++...
T Consensus 718 ---------------------------------------------------~s~d~~vq~~A~~aL~NL~-~~s~e~~~~ 745 (810)
T 3now_A 718 ---------------------------------------------------ANPSPAVQHRGIVIILNMI-NAGEEIAKK 745 (810)
T ss_dssp ---------------------------------------------------TCSSHHHHHHHHHHHHHHH-TTCHHHHHH
T ss_pred ---------------------------------------------------CCCCHHHHHHHHHHHHHHH-hCCHHHHHH
Confidence 6788999999999999998 467889999
Q ss_pred HHHcCCchHHhhhhccc---cHHHHHHHHHHHHHHHHhhHH
Q psy12605 734 LVQEGVIPPFCDLLSCK---DAQVIQVVLDGINNMLKMADA 771 (845)
Q Consensus 734 l~~~~~i~~L~~~L~~~---d~~~~~~al~~L~~l~~~~~~ 771 (845)
+++.|++++|+.+|+.+ +.++++.|+.+|.++++.|.-
T Consensus 746 l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~ 786 (810)
T 3now_A 746 LFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRII 786 (810)
T ss_dssp HHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCc
Confidence 99999999999999765 789999999999999987753
|
| >3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-43 Score=405.71 Aligned_cols=615 Identities=14% Similarity=0.118 Sum_probs=460.4
Q ss_pred HHHHHHHHHc--CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 46 LDMLVVEAAR--KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 46 i~~lv~~~l~--~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
+.+++ +.+. +.+.+.+.+|+.-|..+... +.-.+.+...|++..|.++++...++++...|.++|..+|.++.+.
T Consensus 8 v~~m~-~i~~~~~~~~~~~~~a~~nl~vl~re--~aga~~i~~~~~~~~~~~l~~~~~~~~~~~~~~r~~~~~~~~~~~r 84 (810)
T 3now_A 8 VKQMM-DLTFDLATPIDKRRAAANNLVVLAKE--QTGAELLYKDHCIAKVASLTKVEKDQDIYVNMVHLVAALCENSVER 84 (810)
T ss_dssp HHHHH-HHHHSSCCSSHHHHHHHHHHHHHSSC--HHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHH-HHHcccccCHHHHHHHHhhceeeecc--ccchHHHHhCchHHHHHHHHhccCchhHHHHHHHHHHHHHhccHHH
Confidence 44554 4443 45677889999999887553 3456788899999999999986588999999999999999998888
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcC----CC------------------------------------h
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG----DG------------------------------------P 163 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~----~~------------------------------------~ 163 (845)
...+++.=++|.++.++.+++++....++.++..+-. .. .
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (810)
T 3now_A 85 TKGVLTELGVPWFMRVLDQKHENCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISG 164 (810)
T ss_dssp HHHHHHHSCHHHHHHHHHCCSTTHHHHHHHHHHHHHHHHHTCCSSTTCCCCHHHHHHTHHHHHHHHHHHHHHHTCTTSCH
T ss_pred HHHHHHHcCHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhccccccccCCcHHHHhhhhhHHHHHHHHHHHHhhccccCh
Confidence 8888888899999999988877665555555444320 00 0
Q ss_pred hhHHH-------------------HHhcCChhhHHhhhcC----------CCCHHHHHHH--------------------
Q psy12605 164 QLRDY-------------------VINMGVVPPLLSFIKP----------DIPISFLRNV-------------------- 194 (845)
Q Consensus 164 ~~r~~-------------------i~~~g~i~~Lv~ll~~----------~~~~~~~~~a-------------------- 194 (845)
..|+. ....+++..++..... +.+.+.|..+
T Consensus 165 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~v~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 244 (810)
T 3now_A 165 AARDGVIELITRNVHYTALEWAERLVEIRGLCRLLDVCSELEDYKYESAMDITGSSSTIASVCLARIYENMYYDEAKARF 244 (810)
T ss_dssp HHHHHHHHHHHHHTTCTTTTHHHHHHHTTHHHHHHHHHTCCSSSCCSSCCCCCTTHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred hhHHHHHHHHHHhCCccccccccchhhHhhHHHHHHHHhcCccccccccCCCChhHHHHHHHHHHHHHHHhccchhHHHH
Confidence 01111 1222344444433321 0022344444
Q ss_pred -----------------------HHHHHHhhcCCCCCCC-hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHh
Q psy12605 195 -----------------------TWVIVNLCRNKDPPPS-MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250 (845)
Q Consensus 195 -----------------------~~~L~~l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (845)
.|++.++..+...... .....|++|.|+.++.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~a~~alt~i~~g~~~~~~~~~~~~G~v~~li~Ll~s~~~~------------------- 305 (810)
T 3now_A 245 TDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDEL------------------- 305 (810)
T ss_dssp HHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHSSSHHHHHHHHHTTTHHHHHHHHHHSSCHH-------------------
T ss_pred HHHHHHHHHHHhccCChHhHHHHHHHHHHHhcCCHHHHHHHHhccchHHHHHHHhCCCCHH-------------------
Confidence 4444444443311111 111346677777777666666
Q ss_pred hhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCCh-hhHHHHhcCC----
Q psy12605 251 LVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD-EQTQVILNCD---- 325 (845)
Q Consensus 251 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~-~~~~~i~~~~---- 325 (845)
++..|+|++..++.. .+.+..+.+.|+ +.|+.++.+++..++..|+.+|+++....+ +......+.|
T Consensus 306 ------~q~~A~~al~~aa~~-~~~R~~I~~~gv-~~L~~Ll~s~~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~ 377 (810)
T 3now_A 306 ------QQRVACECLIAASSK-KDKAKALCEQGV-DILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALK 377 (810)
T ss_dssp ------HHHHHHHHHHHHTTS-HHHHHTTHHHHH-HHHHHHTTCSCHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHH
T ss_pred ------HHHHHHHHHHHHcCC-cHHHHHHHHcCc-HHHHHHHcCCCHHHHHHHHHHHHHhccccccCccccchhhccHHH
Confidence 888999999998765 667777878776 999999998888999999999999975322 2111222333
Q ss_pred ccchhhHhhcCC--chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 326 ALSHFPALLTHP--KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 326 ~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
.++.++++|.++ ++++++.|+|+|++++.......+...+.|++|.|++++.+. ++.+++.|+|+|.|++.+.
T Consensus 378 Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~~vk~~lv~d~g~Ip~LV~LL~s~-----d~~i~~~al~~L~NLt~~~ 452 (810)
T 3now_A 378 LAEACRRFLIKPGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGG-----NQSCLYGVVTTFVNLCNAY 452 (810)
T ss_dssp HHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHHHHTT-----CGGGHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHhCCC-----ChHHHHHHHHHHHHHcCCc
Confidence 356788888887 889999999999999766444444444689999999999874 7899999999999999864
Q ss_pred h-----------------------------Hh---HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHH
Q psy12605 404 S-----------------------------AQ---TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 451 (845)
Q Consensus 404 ~-----------------------------~~---~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~ 451 (845)
+ .. .+.+++.|+++.|+.++.++++.+++.|+|+|+|++.+ ++.|..
T Consensus 453 d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d-~~~r~~ 531 (810)
T 3now_A 453 EKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGL-KELRGK 531 (810)
T ss_dssp CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTS-HHHHHH
T ss_pred hhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHH
Confidence 2 12 37889999999999999999999999999999999975 569999
Q ss_pred HHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCCh--hHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCch
Q psy12605 452 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM--STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 529 (845)
Q Consensus 452 l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~--~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~ 529 (845)
+.+.|+++.|+.++.+.. ...++.++|+|+||+.+..|...+ ....+++|.|..++.+......
T Consensus 532 Vv~~Gaip~Lv~LL~s~~-~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~------------- 597 (810)
T 3now_A 532 VVQEGGVKALLRMALEGT-EKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALE------------- 597 (810)
T ss_dssp HHHTTHHHHHHHHHHSSC-HHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHH-------------
T ss_pred HHHCCCHHHHHHHHccCC-HHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHH-------------
Confidence 999999999999998654 478999999999999865321111 1123455555555543322111
Q ss_pred hhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhh
Q psy12605 530 ISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 609 (845)
Q Consensus 530 ~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsn 609 (845)
+..++.++.|++.++++..+.+++.|+++.|..++.++++.+++.|+++|+|
T Consensus 598 ----------------------------~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~N 649 (810)
T 3now_A 598 ----------------------------NFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCN 649 (810)
T ss_dssp ----------------------------HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHHHHHH
T ss_pred ----------------------------HHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 1124556666666667777888999999999999999999999999999999
Q ss_pred hccCCHHHHHHHHH-CCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhcccc
Q psy12605 610 ITAGNQAQVQAVID-AGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATG 688 (845)
Q Consensus 610 l~~~~~~~~~~~~~-~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (845)
|+.+++ .+..+++ .|.++.|+.++
T Consensus 650 La~~~~-~~~~~v~~~g~l~~Lv~LL------------------------------------------------------ 674 (810)
T 3now_A 650 LVMSED-VIKMFEGNNDRVKFLALLC------------------------------------------------------ 674 (810)
T ss_dssp HTTSHH-HHHHHHSSSSHHHHHHHGG------------------------------------------------------
T ss_pred HhCChH-HHHHHHhccCcHHHHHHHh------------------------------------------------------
Confidence 998655 4555665 78899999887
Q ss_pred CcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHH-cCCchHHhhhhccccHHHHHHHHHHHHHHHH
Q psy12605 689 GFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQ-EGVIPPFCDLLSCKDAQVIQVVLDGINNMLK 767 (845)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~-~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~ 767 (845)
.+.+..+|++|+|+|+|++ .+++.+.+.+++ .|++++|+++|.++|.++++.|+++|.|+..
T Consensus 675 ----------------~s~d~~vq~~Aa~ALanLt-~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~~ 737 (810)
T 3now_A 675 ----------------EDEDEETATACAGALAIIT-SVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMIN 737 (810)
T ss_dssp ----------------GCSSHHHHHHHHHHHHHHH-HHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred ----------------cCCCHHHHHHHHHHHHHHh-CCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHHh
Confidence 5577899999999999999 457888999998 8999999999999999999999999999997
Q ss_pred hhHHHHHHHHHHHHHhChHHHHHhhhcCC---CHHHHHHHHHHHHHhcCc
Q psy12605 768 MADAQVETLANMIEECGGLDKIEMLQNHE---NVEIYKLAYDIIERYFSE 814 (845)
Q Consensus 768 ~~~~~~~~~~~~~~e~g~~~~L~~l~~~~---~~~v~~~a~~~l~~~~~~ 814 (845)
..+ .....+.+.|++++|..++... +.++++.|.+.|+.....
T Consensus 738 ~s~----e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~ 783 (810)
T 3now_A 738 AGE----EIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERY 783 (810)
T ss_dssp TCH----HHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHH
T ss_pred CCH----HHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhC
Confidence 433 2468899999999999997544 788999999999877643
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-40 Score=380.29 Aligned_cols=508 Identities=15% Similarity=0.177 Sum_probs=418.6
Q ss_pred HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH-cCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCC
Q psy12605 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 84 i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~ 161 (845)
.+..|.+|.|+.+|+ ++++.+|..|+.+|.+++.+ .+.+..++. .|+++.|+++|.++ +++++..|+++|++++.+
T Consensus 13 ~~~~~~i~~Lv~lL~-~~~~~v~~~A~~~L~~l~~~-~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 13 ELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ----CHHHHHHHHHT-CSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhhHhhHHHHHHHhC-CCCHHHHHHHHHHHHHHHcC-CccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 456789999999994 77899999999999999975 556666665 48999999999754 899999999999999966
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHh
Q psy12605 162 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSII 241 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~ 241 (845)
++++..+.+.|+++.|+.+++++ +..++..|+++|.+++.+.+.........|++|.|+.++.+++++
T Consensus 91 -~~~~~~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~---------- 158 (529)
T 1jdh_A 91 -REGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK---------- 158 (529)
T ss_dssp -HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHH----------
T ss_pred -chhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcCCHH----------
Confidence 56999999999999999999887 468999999999999997654444455679999999999988777
Q ss_pred hhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC-chhhHHHHHHHHHHHhcCChhhHHH
Q psy12605 242 EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK-EVKVQTASLRAVGNIVTGTDEQTQV 320 (845)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~ 320 (845)
++..++.+|.+++..+++....+.+.|+++.|+.+|.++ ....+..++.+|.+++.. +..+..
T Consensus 159 ---------------~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~-~~~~~~ 222 (529)
T 1jdh_A 159 ---------------FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA 222 (529)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred ---------------HHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcC-cccHHH
Confidence 888888899999988788888888999999999999665 455777889999999864 566788
Q ss_pred HhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 321 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
+.+.|+++.|+.++.+.++.++..++|+|.+++.+.+.. ....+++|.|++++.+ .+++++..|+|+|++++
T Consensus 223 ~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~-----~~~~v~~~a~~~L~~L~ 294 (529)
T 1jdh_A 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGS-----DDINVVTCAAGILSNLT 294 (529)
T ss_dssp HHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcC-----CCHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999998765432 1124678999999976 48999999999999999
Q ss_pred cCChHhHHHHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhcCChH---HHHHHHhCCChHHHHhccCCCCChhHHH
Q psy12605 401 SGTSAQTQEVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLR 475 (845)
Q Consensus 401 ~~~~~~~~~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 475 (845)
.++++.+..+.+.|+++.|++++.+ ++++++..|+++|+|++..++. .+..+.+.|+++.|+.++.+..+..+++
T Consensus 295 ~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~ 374 (529)
T 1jdh_A 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred cCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHH
Confidence 9988999999999999999999975 4479999999999999986543 6788999999999999999877678999
Q ss_pred HHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCc
Q psy12605 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPM 555 (845)
Q Consensus 476 ~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 555 (845)
.++|+++|++.+..
T Consensus 375 ~a~~~l~nl~~~~~------------------------------------------------------------------ 388 (529)
T 1jdh_A 375 ATVGLIRNLALCPA------------------------------------------------------------------ 388 (529)
T ss_dssp HHHHHHHHHTTSGG------------------------------------------------------------------
T ss_pred HHHHHHHHHhcChh------------------------------------------------------------------
Confidence 99999999985431
Q ss_pred ccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhh
Q psy12605 556 SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635 (845)
Q Consensus 556 ~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~ 635 (845)
....+.+.|+++.|+.++.+++++++++|+|+++|.+...
T Consensus 389 -------------------~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~l~n~~~~~--------------------- 428 (529)
T 1jdh_A 389 -------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE--------------------- 428 (529)
T ss_dssp -------------------GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBT---------------------
T ss_pred -------------------hhHHHHHcCCHHHHHHHHHHHhHHHHHHHhcccCchhhhc---------------------
Confidence 1134556788888888888888999999999999832100
Q ss_pred hhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHH
Q psy12605 636 KRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEA 715 (845)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 715 (845)
.....+++..+
T Consensus 429 ---------------------------------------------------------------------~~~~~~i~~~~ 439 (529)
T 1jdh_A 429 ---------------------------------------------------------------------GVRMEEIVEGC 439 (529)
T ss_dssp ---------------------------------------------------------------------TBCHHHHHHHH
T ss_pred ---------------------------------------------------------------------cccHHHHHHHH
Confidence 01112455678
Q ss_pred HHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcC
Q psy12605 716 AWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH 795 (845)
Q Consensus 716 ~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~ 795 (845)
+.++++++ .++++...+.+.|++++|+.++.+.+++++..+..+|.++.... .+...+.+.|+++.|..++++
T Consensus 440 ~~al~~L~--~~~~~~~~l~~~~~v~~l~~ll~~~~~~v~~~a~~~l~~l~~~~-----~~~~~i~~~~~~~~L~~l~~~ 512 (529)
T 1jdh_A 440 TGALHILA--RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-----EAAEAIEAEGATAPLTELLHS 512 (529)
T ss_dssp HHHHHHHT--TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSH-----HHHHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHh--cCchHHHHHhccCCccHHHHHHcCCchHHHHHHHHHHHHHhcCH-----HHHHHHHHcCChHHHHHHhcC
Confidence 88999998 46788888999999999999999999999999999999987532 356789999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy12605 796 ENVEIYKLAYDIIERY 811 (845)
Q Consensus 796 ~~~~v~~~a~~~l~~~ 811 (845)
++++++++|.++|.++
T Consensus 513 ~~~~v~~~a~~aL~~l 528 (529)
T 1jdh_A 513 RNEGVATYAAAVLFRM 528 (529)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc
Confidence 9999999999999875
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=389.60 Aligned_cols=543 Identities=15% Similarity=0.173 Sum_probs=434.3
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
.+.+++.++ +.|.++++..+..++..+++. .+..+..|.+|.|+.+|. ++++.+|..|+.+|.+++.. .
T Consensus 113 ~~~~i~~lv-~~L~~~~~~~r~~a~~~l~~~--------~~~~i~~g~ip~Lv~lL~-~~d~~vr~~A~~~L~~L~~~-~ 181 (780)
T 2z6g_A 113 FDSAHPTNV-QRLAEPSQMLKHAVVNLINYQ--------DDAELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKK-E 181 (780)
T ss_dssp --------------CCSCHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHHTS-H
T ss_pred ccccHHHHH-HHhcCccHHHHHHHHHHHHhh--------hHHHHHhCCHHHHHHHHC-CCCHHHHHHHHHHHHHHhCC-C
Confidence 345678899 899999988888888887753 122445899999999995 67899999999999999975 4
Q ss_pred hhHHHHHH-cCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 122 AQTQEVVA-AGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 122 ~~~~~i~~-~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
+.+..+++ .|+++.|+++|.++ +++++..|+++|.+++.+ ++++..+.+.|+++.|+.+++++ +..++..|+++|.
T Consensus 182 ~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-~~~v~~~A~~aL~ 259 (780)
T 2z6g_A 182 ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-VDSVLFHAITTLH 259 (780)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHH
T ss_pred hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 56666665 48999999999855 899999999999999966 56788899999999999999887 5689999999999
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
+++.+.+.........++++.|+.++.+.+.. ++..++.+|..++..+.+....+
T Consensus 260 nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~-------------------------v~~~a~~aL~~La~~~~e~~~~i 314 (780)
T 2z6g_A 260 NLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK-------------------------FLAITTDCLQILAYGNQESKLII 314 (780)
T ss_dssp HHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH-------------------------HHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhCCChhhHHHHHHcCCHHHHHHHHhcCCHH-------------------------HHHHHHHHHHHHhcCChHHHHHH
Confidence 99997654444445679999999999987777 78888889998887777777888
Q ss_pred HhcCchhhHHhhccCCc-hhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH
Q psy12605 280 IDSGVVPSLIPLLSHKE-VKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
.+.|+++.|+.+|++.+ ...+..++.+|.+++.. +..+..+++.|+++.|+.++.+.+..++..++++|.+++.....
T Consensus 315 ~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~ 393 (780)
T 2z6g_A 315 LASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK 393 (780)
T ss_dssp HTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-TTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTT
T ss_pred HHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcC-hHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchh
Confidence 89999999999997665 44667889999999864 55678888999999999999999999999999999999876543
Q ss_pred HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHH
Q psy12605 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVW 436 (845)
Q Consensus 359 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~a~~ 436 (845)
. ....++++.|++++.+ .++.++..|+++|.+++.++++.+..+++.|+++.|+++|.+. .++++..|++
T Consensus 394 ~---~~~~~~i~~Lv~lL~~-----~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~ 465 (780)
T 2z6g_A 394 Q---EGMEGLLGTLVQLLGS-----DDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAIC 465 (780)
T ss_dssp C---SCCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred h---hhhhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHH
Confidence 1 1124578999999986 4899999999999999999989999999999999999999863 3489999999
Q ss_pred HHHHhhcCChH---HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCCh
Q psy12605 437 ALGNIIGDGPQ---LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT 513 (845)
Q Consensus 437 ~L~nl~~~~~~---~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~ 513 (845)
+|++|+...++ .+..+...|+++.|+.++.......+++.++|+|+|++.+..
T Consensus 466 aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~~------------------------ 521 (780)
T 2z6g_A 466 ALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPA------------------------ 521 (780)
T ss_dssp HHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSHH------------------------
T ss_pred HHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCHH------------------------
Confidence 99999976543 467888999999999999987767899999999999985331
Q ss_pred hHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhc
Q psy12605 514 SVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLT 593 (845)
Q Consensus 514 ~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~ 593 (845)
....+.+.|+++.|+.++.
T Consensus 522 -------------------------------------------------------------~~~~i~~~g~i~~Lv~lL~ 540 (780)
T 2z6g_A 522 -------------------------------------------------------------NHAPLREQGAIPRLVQLLV 540 (780)
T ss_dssp -------------------------------------------------------------HHHHHHHTTHHHHHHHHHH
T ss_pred -------------------------------------------------------------HHHHHHHCCCHHHHHHHHH
Confidence 1134556677888888888
Q ss_pred CCChhHHHHHHHHHhh--hccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHh
Q psy12605 594 HPKEKICKEAVWFLSN--ITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERM 671 (845)
Q Consensus 594 ~~~~~v~~~a~~~Lsn--l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (845)
+.+.+++++++|+++| +..
T Consensus 541 ~~~~~~~~~aa~al~nq~~~~----------------------------------------------------------- 561 (780)
T 2z6g_A 541 RAHQDTQRRTSMGGTQQQFVE----------------------------------------------------------- 561 (780)
T ss_dssp HHHHHHHHTTC------CCST-----------------------------------------------------------
T ss_pred hcchhHHHHHhhccccchhhc-----------------------------------------------------------
Confidence 8888899999998887 211
Q ss_pred hhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhcccc
Q psy12605 672 IYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKD 751 (845)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d 751 (845)
.....+++..++.+|++++ .++++...+.+.|++++|+.+|.+.+
T Consensus 562 ---------------------------------~~~~~~v~~~a~~aL~~La--~~~~~~~~l~~~~~i~~Lv~lL~~~~ 606 (780)
T 2z6g_A 562 ---------------------------------GVRMEEIVEACTGALHILA--RDIHNRIVIRGLNTIPLFVQLLYSPI 606 (780)
T ss_dssp ---------------------------------TCCHHHHHHHHHHHHHHHT--TSHHHHHHHHHTCCHHHHHHGGGCSC
T ss_pred ---------------------------------ccChHHHHHHHHHHHHHHh--cChhhHHHHHHCCcHHHHHHHHcCCC
Confidence 1122457788999999998 46788888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHH--------------------HHHHHHHh
Q psy12605 752 AQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKL--------------------AYDIIERY 811 (845)
Q Consensus 752 ~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~--------------------a~~~l~~~ 811 (845)
+.++..++.+|.++.... .+...|.+.|+++.|..+++++++++++. +.+++.+|
T Consensus 607 ~~v~~~a~~aL~~L~~~~-----~~~~~i~~~g~i~~L~~Ll~~~~~~Vr~~A~~aL~~l~~~~~~~~~~~l~~~ll~~l 681 (780)
T 2z6g_A 607 ENIQRVAAGVLCELAQDK-----EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSL 681 (780)
T ss_dssp HHHHHHHHHHHHHHHTSH-----HHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHTTSCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcCH-----HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHhhhccccHHHHHHH
Confidence 999999999999998542 35688999999999999999999999654 55667777
Q ss_pred cCcc
Q psy12605 812 FSEV 815 (845)
Q Consensus 812 ~~~~ 815 (845)
|..+
T Consensus 682 ~~~~ 685 (780)
T 2z6g_A 682 FRTE 685 (780)
T ss_dssp ----
T ss_pred HhCC
Confidence 7666
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=379.35 Aligned_cols=511 Identities=15% Similarity=0.184 Sum_probs=424.2
Q ss_pred HHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH-cCChHHHHHhhCCC-ChhHHHHHHHHHHHhcC
Q psy12605 83 ALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMSP-HSNVCEQAVWALGNIIG 160 (845)
Q Consensus 83 ~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~ 160 (845)
..+..|.+|.|+++|+ ++++.+|..|+.+|.+++... +.+..++. .|+++.|+++|.++ +++++..|+.+|.+++.
T Consensus 9 ~~~~~g~i~~Lv~lL~-~~~~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~ 86 (644)
T 2z6h_A 9 AELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH 86 (644)
T ss_dssp ---CTTTHHHHHHHHT-CSCHHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT
T ss_pred hhhhhchHHHHHHHHc-CCCHHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 3467899999999994 778999999999999999864 46666665 48999999999875 89999999999999997
Q ss_pred CChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHH
Q psy12605 161 DGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSI 240 (845)
Q Consensus 161 ~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l 240 (845)
+ ++.+..+.+.|+++.|+.+++++ +..++..|+++|.+++...+.........+++|.|+.++.+.+++
T Consensus 87 ~-~~~~~~i~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~--------- 155 (644)
T 2z6h_A 87 H-REGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK--------- 155 (644)
T ss_dssp S-HHHHHHHHTTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHH---------
T ss_pred C-hhhHHHHHHcCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHH---------
Confidence 6 56999999999999999999887 568999999999999987644444445679999999999988776
Q ss_pred hhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCc-hhhHHHHHHHHHHHhcCChhhHH
Q psy12605 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE-VKVQTASLRAVGNIVTGTDEQTQ 319 (845)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~-~~v~~~al~~L~nl~~~~~~~~~ 319 (845)
++..++.+|.+++..+.+....+.+.|+++.|+.+|.+.+ ..++..++++|.+++.. +..+.
T Consensus 156 ----------------~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~-~~~~~ 218 (644)
T 2z6h_A 156 ----------------FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKP 218 (644)
T ss_dssp ----------------HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTC-TTHHH
T ss_pred ----------------HHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcC-cccHH
Confidence 7788888999999877777788889999999999997654 67888999999999864 56688
Q ss_pred HHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHH
Q psy12605 320 VILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399 (845)
Q Consensus 320 ~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l 399 (845)
.+++.|+++.|+.++.+.+..++..++|+|.+++...+.. ....++++.|++++.+ .+++++..|+|+|.++
T Consensus 219 ~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~-----~d~~v~~~a~~aL~~L 290 (644)
T 2z6h_A 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGS-----DDINVVTCAAGILSNL 290 (644)
T ss_dssp HHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcC-----CCHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999998765331 1123679999999986 4899999999999999
Q ss_pred hcCChHhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCCh---HHHHHHHhCCChHHHHhccCCCCChhHH
Q psy12605 400 ASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGP---QLRDYVINMGVVPPLLSFIKPDIPISFL 474 (845)
Q Consensus 400 ~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~---~~~~~l~~~g~l~~L~~ll~~~~~~~~~ 474 (845)
+.++++.+..+.+.|+++.|+.++.+. .++++..|+++|++++...+ ..+..+...|+++.|+++|.+..+..++
T Consensus 291 ~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~ 370 (644)
T 2z6h_A 291 TCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLI 370 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHH
T ss_pred HcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHH
Confidence 999889999999999999999999863 37999999999999997544 4566788999999999999987667899
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCC
Q psy12605 475 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGP 554 (845)
Q Consensus 475 ~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~ 554 (845)
+.++|+++|++.+..
T Consensus 371 ~~a~~~L~nLa~~~~----------------------------------------------------------------- 385 (644)
T 2z6h_A 371 KATVGLIRNLALCPA----------------------------------------------------------------- 385 (644)
T ss_dssp HHHHHHHHHHTTSGG-----------------------------------------------------------------
T ss_pred HHHHHHHHHHccCHH-----------------------------------------------------------------
Confidence 999999999985431
Q ss_pred cccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhh--hccCCHHHHHHHHHCCChHHHHH
Q psy12605 555 MSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN--ITAGNQAQVQAVIDAGLLPKIIA 632 (845)
Q Consensus 555 ~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsn--l~~~~~~~~~~~~~~~~l~~L~~ 632 (845)
..+.+.+.|+++.|+.++.+.+.+++++|+|+++| +..
T Consensus 386 --------------------~~~~i~~~~~i~~Lv~lL~~~~~~vr~~a~~al~n~~~~~-------------------- 425 (644)
T 2z6h_A 386 --------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE-------------------- 425 (644)
T ss_dssp --------------------GHHHHHHTTHHHHHHHHHHHHHHHHTTC----------CC--------------------
T ss_pred --------------------HHHHHHHcCCHHHHHHHHhccchhhhhHhhhccccchhcc--------------------
Confidence 11445677888888999988889999999999887 221
Q ss_pred HhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccch
Q psy12605 633 NLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQ 712 (845)
Q Consensus 633 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 712 (845)
...+.+++
T Consensus 426 ------------------------------------------------------------------------~~~~~~v~ 433 (644)
T 2z6h_A 426 ------------------------------------------------------------------------GVRMEEIV 433 (644)
T ss_dssp ------------------------------------------------------------------------SSCHHHHH
T ss_pred ------------------------------------------------------------------------cccHHHHH
Confidence 11234677
Q ss_pred hHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhh
Q psy12605 713 KEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEML 792 (845)
Q Consensus 713 ~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l 792 (845)
..++.+|.+++ .++++...+.+.|++++|+++|.+.+++++..++.+|.++.... .+...+.+.|+++.|..+
T Consensus 434 ~~a~~aL~~La--~~~~~~~~l~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~l~~~~-----~~~~~i~~~g~l~~L~~l 506 (644)
T 2z6h_A 434 EGCTGALHILA--RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDK-----EAAEAIEAEGATAPLTEL 506 (644)
T ss_dssp HHHHHHHHHHT--TSHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSH-----HHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHh--cCHHHHHHHHhCCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCH-----HHHHHHHHcCChhHHHHH
Confidence 78999999998 45677888889999999999999999999999999999998542 256789999999999999
Q ss_pred hcCCCHHHHH------------------H--HHHHHHHhcCcc
Q psy12605 793 QNHENVEIYK------------------L--AYDIIERYFSEV 815 (845)
Q Consensus 793 ~~~~~~~v~~------------------~--a~~~l~~~~~~~ 815 (845)
+++++++++. + +.+++.+||..+
T Consensus 507 l~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~il~~~~~~~ 549 (644)
T 2z6h_A 507 LHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTSSLFRTE 549 (644)
T ss_dssp TTCSCHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHSCCS
T ss_pred HcCCCHHHHHHHHHHHHHHhccCcHhhhcccchHHHHHHHhCC
Confidence 9999999844 4 677888898776
|
| >1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=365.62 Aligned_cols=508 Identities=16% Similarity=0.161 Sum_probs=417.5
Q ss_pred hhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHh-cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 43 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH-SGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
...++.++ ++++++++..+..|+..|.++.... .....++. .|+++.|+++|..+++++++..|+.+|.+++.. +
T Consensus 16 ~~~i~~Lv-~lL~~~~~~v~~~A~~~L~~l~~~~--~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~-~ 91 (529)
T 1jdh_A 16 TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-R 91 (529)
T ss_dssp -CHHHHHH-HHHTCSCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-H
T ss_pred HhhHHHHH-HHhCCCCHHHHHHHHHHHHHHHcCC--ccHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC-c
Confidence 45688888 8999999999999999999987643 23445554 489999999997666889999999999999875 7
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
+++..+.+.|++|.|+++|++++++++..|+++|++++.+++..+..+.+.|+++.|+.++.++ +..++..++.+|.++
T Consensus 92 ~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-~~~~~~~~~~~L~~l 170 (529)
T 1jdh_A 92 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQIL 170 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999988778899999999999999999886 557888999999999
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
+.+++.........++++.|+.++++.+++. ....++.+|.+++... +....+.+
T Consensus 171 a~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~------------------------~~~~a~~~L~~l~~~~-~~~~~~~~ 225 (529)
T 1jdh_A 171 AYGNQESKLIILASGGPQALVNIMRTYTYEK------------------------LLWTTSRVLKVLSVCS-SNKPAIVE 225 (529)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHHHCCCHH------------------------HHHHHHHHHHHHTTST-THHHHHHH
T ss_pred HhCCHHHHHHHHHCCCHHHHHHHHHhCChHH------------------------HHHHHHHHHHHHhcCc-ccHHHHHH
Confidence 9865333344455689999999998766551 6667888899998754 45677779
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.|+++.|+.++.++++.++..++++|++++...+.. ....++++.|++++.+.+++++..|+++|++++.++++..+
T Consensus 226 ~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~---~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~ 302 (529)
T 1jdh_A 226 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 302 (529)
T ss_dssp TTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHH
T ss_pred CCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhh---HHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 999999999999999999999999999999765332 12237899999999999999999999999999998888889
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH---hHHHHHHcCChHHHHHhhCCCC-HHHHHHHHHH
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA---QTQEVVAAGAVPLFLRLLMSPH-SNVCEQAVWA 437 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~g~i~~Lv~lL~~~~-~~v~~~a~~~ 437 (845)
.+.+.|+++.|++++.+.+ +++.++..|+++|++++.++++ .+..+.+.|+++.|++++.+++ +.++..++|+
T Consensus 303 ~~~~~~~v~~L~~ll~~~~---~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~ 379 (529)
T 1jdh_A 303 MVCQVGGIEALVRTVLRAG---DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 379 (529)
T ss_dssp HHHHTTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHccC---CHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHH
Confidence 9999999999999998753 3589999999999999986543 4678899999999999999887 5999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHH
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSI 517 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~ 517 (845)
|+|++.... .+..+.+.|+++.|+.++.+ .+.++++.++|+++|.+....
T Consensus 380 l~nl~~~~~-~~~~~~~~~~i~~L~~ll~~-~~~~v~~~a~~~l~n~~~~~~---------------------------- 429 (529)
T 1jdh_A 380 IRNLALCPA-NHAPLREQGAIPRLVQLLVR-AHQDTQRRTSMGGTQQQFVEG---------------------------- 429 (529)
T ss_dssp HHHHTTSGG-GHHHHHHTTHHHHHHHHHHH-HHHHHC-----------CBTT----------------------------
T ss_pred HHHHhcChh-hhHHHHHcCCHHHHHHHHHH-HhHHHHHHHhcccCchhhhcc----------------------------
Confidence 999998644 56788899999999999974 335677788888877331110
Q ss_pred HHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCCh
Q psy12605 518 YLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE 597 (845)
Q Consensus 518 ~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~ 597 (845)
....
T Consensus 430 ----------------------------------------------------------------------------~~~~ 433 (529)
T 1jdh_A 430 ----------------------------------------------------------------------------VRME 433 (529)
T ss_dssp ----------------------------------------------------------------------------BCHH
T ss_pred ----------------------------------------------------------------------------ccHH
Confidence 0012
Q ss_pred hHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccc
Q psy12605 598 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQ 677 (845)
Q Consensus 598 ~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 677 (845)
.++..++.+|.+++. ++.....+.+.|+++.|+.++
T Consensus 434 ~i~~~~~~al~~L~~-~~~~~~~l~~~~~v~~l~~ll------------------------------------------- 469 (529)
T 1jdh_A 434 EIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLL------------------------------------------- 469 (529)
T ss_dssp HHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGG-------------------------------------------
T ss_pred HHHHHHHHHHHHHhc-CchHHHHHhccCCccHHHHHH-------------------------------------------
Confidence 345567888888876 456667788999999999988
Q ss_pred cCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHH
Q psy12605 678 KTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQV 757 (845)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~ 757 (845)
.+.++++++.+++++++++ .+++....+.+.|+++.|..+++++|++++..
T Consensus 470 ---------------------------~~~~~~v~~~a~~~l~~l~--~~~~~~~~i~~~~~~~~L~~l~~~~~~~v~~~ 520 (529)
T 1jdh_A 470 ---------------------------YSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEGVATY 520 (529)
T ss_dssp ---------------------------GCSCHHHHHHHHHHHHHHT--TSHHHHHHHHHTTCHHHHHHGGGCSSHHHHHH
T ss_pred ---------------------------cCCchHHHHHHHHHHHHHh--cCHHHHHHHHHcCChHHHHHHhcCCCHHHHHH
Confidence 5677899999999999998 46778888889999999999999999999999
Q ss_pred HHHHHHHH
Q psy12605 758 VLDGINNM 765 (845)
Q Consensus 758 al~~L~~l 765 (845)
|.++|.+|
T Consensus 521 a~~aL~~l 528 (529)
T 1jdh_A 521 AAAVLFRM 528 (529)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhc
Confidence 99999876
|
| >2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-38 Score=373.11 Aligned_cols=539 Identities=15% Similarity=0.165 Sum_probs=435.0
Q ss_pred hhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHh-cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 43 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH-SGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
...++.++ ++|+++++.++..|+..|.++.... .....++. .|+++.|++.|..+++++++..|+.+|.+++.. .
T Consensus 13 ~g~i~~Lv-~lL~~~~~~vr~~A~~~L~~La~~~--~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~-~ 88 (644)
T 2z6h_A 13 TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH-R 88 (644)
T ss_dssp TTTHHHHH-HHHTCSCHHHHHHHHHHHHHHHTST--THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTS-H
T ss_pred hchHHHHH-HHHcCCCHHHHHHHHHHHHHHHCCC--hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcC-h
Confidence 45688899 8999999999999999999987654 24455554 489999999997556899999999999999875 6
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
+++..+.+.|++|.|+++|+++++.++..|+++|++++.+.+..+..+.+.|+++.|+.++.++ +..++..++.+|.++
T Consensus 89 ~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L 167 (644)
T 2z6h_A 89 EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQIL 167 (644)
T ss_dssp HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcC-CHHHHHHHHHHHHHH
Confidence 7888999999999999999999999999999999999988777888899999999999999887 447888888899999
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
+.+.+.........++++.|+.++.+.+.+ .++..++.+|.+++.. .+....+++
T Consensus 168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~------------------------~~~~~a~~~L~nLs~~-~~~~~~l~~ 222 (644)
T 2z6h_A 168 AYGNQESKLIILASGGPQALVNIMRTYTYE------------------------KLLWTTSRVLKVLSVC-SSNKPAIVE 222 (644)
T ss_dssp HTTCHHHHHHHHHTTHHHHHHHHHTTCCCH------------------------HHHHHHHHHHHHHTTC-TTHHHHHHH
T ss_pred HhcCcHHHHHHHHcCChHHHHHHHHcCChH------------------------HHHHHHHHHHHHHhcC-cccHHHHHH
Confidence 975533334445678999999999876543 1677889999999865 445677789
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.|+++.|+.++.+++..++..++++|++++...... ....++++.|+.++.+.++.++..|+|+|++++.+.+..++
T Consensus 223 ~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~ 299 (644)
T 2z6h_A 223 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 299 (644)
T ss_dssp TTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred CCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999999998764331 12237899999999999999999999999999998888889
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH---hHHHHHHcCChHHHHHhhCCCC-HHHHHHHHHH
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA---QTQEVVAAGAVPLFLRLLMSPH-SNVCEQAVWA 437 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~g~i~~Lv~lL~~~~-~~v~~~a~~~ 437 (845)
.+.+.|+++.|++++.+.+ +.+.++..|+++|++++..+++ .+..+.+.|+++.|+++|.+++ +.++..|+|+
T Consensus 300 ~v~~~g~v~~Lv~lL~~~~---~~~~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~ 376 (644)
T 2z6h_A 300 MVCQVGGIEALVRTVLRAG---DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 376 (644)
T ss_dssp HHHHTTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHccC---CcHHHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHH
Confidence 9999999999999998752 2379999999999999976442 3455888999999999999875 6999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH--hhcCCCCCCChhHHHhHHHHHHHhhcCCChhH
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN--LCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n--L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v 515 (845)
|+|++.... .+..+.+.|+++.|+.++.... .++++.++|+++| +..+
T Consensus 377 L~nLa~~~~-~~~~i~~~~~i~~Lv~lL~~~~-~~vr~~a~~al~n~~~~~~---------------------------- 426 (644)
T 2z6h_A 377 IRNLALCPA-NHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEG---------------------------- 426 (644)
T ss_dssp HHHHTTSGG-GHHHHHHTTHHHHHHHHHHHHH-HHHTTC----------CCS----------------------------
T ss_pred HHHHccCHH-HHHHHHHcCCHHHHHHHHhccc-hhhhhHhhhccccchhccc----------------------------
Confidence 999998654 4588889999999999886432 2455555665444 1100
Q ss_pred HHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCC
Q psy12605 516 SIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595 (845)
Q Consensus 516 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~ 595 (845)
..
T Consensus 427 ------------------------------------------------------------------------------~~ 428 (644)
T 2z6h_A 427 ------------------------------------------------------------------------------VR 428 (644)
T ss_dssp ------------------------------------------------------------------------------SC
T ss_pred ------------------------------------------------------------------------------cc
Confidence 02
Q ss_pred ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhc
Q psy12605 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSS 675 (845)
Q Consensus 596 ~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (845)
+..++..++.+|.+++.. +.....+.+.|+++.|++++
T Consensus 429 ~~~v~~~a~~aL~~La~~-~~~~~~l~~~~~i~~Lv~lL----------------------------------------- 466 (644)
T 2z6h_A 429 MEEIVEGCTGALHILARD-VHNRIVIRGLNTIPLFVQLL----------------------------------------- 466 (644)
T ss_dssp HHHHHHHHHHHHHHHTTS-HHHHHHHHHTTCHHHHHHHT-----------------------------------------
T ss_pred HHHHHHHHHHHHHHHhcC-HHHHHHHHhCCcHHHHHHHH-----------------------------------------
Confidence 346778899999999864 46667788999999999988
Q ss_pred cccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHH
Q psy12605 676 FQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVI 755 (845)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~ 755 (845)
.+.++++++.|+++|++++ .+++....+.+.|+++.|+.++++++++++
T Consensus 467 -----------------------------~~~~~~v~~~a~~aL~~l~--~~~~~~~~i~~~g~l~~L~~ll~~~~~~vr 515 (644)
T 2z6h_A 467 -----------------------------YSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEGVA 515 (644)
T ss_dssp -----------------------------TCSCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTCHHHHHHHTTCSCHHHH
T ss_pred -----------------------------cCCCHHHHHHHHHHHHHHH--cCHHHHHHHHHcCChhHHHHHHcCCCHHHH
Confidence 5677889999999999998 467777888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHH
Q psy12605 756 QVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYD 806 (845)
Q Consensus 756 ~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~ 806 (845)
.+|..+|.+|....+.. |.+.+ +++.+..+..+++. .|..|..
T Consensus 516 ~~A~~aL~~l~~~~~~~---~~~~~----~~~il~~~~~~~~~-~w~~~~~ 558 (644)
T 2z6h_A 516 TYAAAVLFRMSEDKPQD---YKKRL----SVELTSSLFRTEPM-AWNETAD 558 (644)
T ss_dssp HHHHHHHHHHTTTSCHH---HHHHH----HHHHHHHHSCCSCG-GGC----
T ss_pred HHHHHHHHHHhccCcHh---hhccc----chHHHHHHHhCCCc-ccccccc
Confidence 99999999998766432 32222 36777777766654 4444443
|
| >2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=377.94 Aligned_cols=540 Identities=15% Similarity=0.166 Sum_probs=429.3
Q ss_pred hhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHh-cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh
Q psy12605 43 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH-SGILPVLVECLERSDRPNLQFEAAWALTNIASGTS 121 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~ 121 (845)
...++.++ .+|.++++.++..|+..|.++.... .....+.. .|+++.|+++|+.+.++.+|..|+.+|.+++.. .
T Consensus 149 ~g~ip~Lv-~lL~~~d~~vr~~A~~~L~~L~~~~--~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~-~ 224 (780)
T 2z6g_A 149 TRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHH-R 224 (780)
T ss_dssp HHHHHHHH-HHHHCSCHHHHHHHHHHHHHHHTSH--HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS-H
T ss_pred hCCHHHHH-HHHCCCCHHHHHHHHHHHHHHhCCC--hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC-c
Confidence 45688888 8999999999999999999987643 23445554 489999999997666899999999999999875 6
Q ss_pred hhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 122 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 122 ~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
+++..+.+.|++|.|+.+|+++++.++..|+++|++|+.+.+..+..+.+.|+++.|+.++.++ +..++..++.+|.++
T Consensus 225 ~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~-~~~v~~~a~~aL~~L 303 (780)
T 2z6g_A 225 EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQIL 303 (780)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCC-CHHHHHHHHHHHHHH
T ss_pred hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 7788899999999999999999999999999999999988788899999999999999999876 557899999999999
Q ss_pred hcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 202 CRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
+...+.........++++.|+.++++.+++. ....++.+|.+++.. ......+++
T Consensus 304 a~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~------------------------~~~~a~~aL~~Ls~~-~~~~~~i~~ 358 (780)
T 2z6g_A 304 AYGNQESKLIILASGGPQALVNIMRTYTYEK------------------------LLWTTSRVLKVLSVC-SSNKPAIVE 358 (780)
T ss_dssp HTTCHHHHHHHHTTTHHHHHHHHHTTCCCHH------------------------HHHHHHHHHHHHHTS-TTHHHHHHH
T ss_pred hcCChHHHHHHHHcCCHHHHHHHHhcCCHHH------------------------HHHHHHHHHHHhhcC-hHHHHHHHH
Confidence 9754322233344588999999998776551 556778888888864 445677789
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.|+++.|+.++.+++..++..|+.+|.+++...... ....++++.|+.++.+.++.++..|+++|++++.+.+..+.
T Consensus 359 ~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~---~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~ 435 (780)
T 2z6g_A 359 AGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKM 435 (780)
T ss_dssp TTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh---hhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 999999999999999999999999999999765331 12236889999999999999999999999999999888889
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH---hHHHHHHcCChHHHHHhhCCCCH-HHHHHHHHH
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA---QTQEVVAAGAVPLFLRLLMSPHS-NVCEQAVWA 437 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~l~~~g~i~~Lv~lL~~~~~-~v~~~a~~~ 437 (845)
.+++.++++.|++++.+.+ +...++..|+++|++|+..+++ .+..+...|+++.|+++|.+++. .++..|+|+
T Consensus 436 ~i~~~g~i~~Lv~lL~~~~---~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~lL~~~~~~~v~~~A~~a 512 (780)
T 2z6g_A 436 MVCQVGGIEALVRTVLRAG---DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGL 512 (780)
T ss_dssp HHHTTTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHccC---CHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHHHhcCCChHHHHHHHHHH
Confidence 9999999999999998752 2348999999999999876544 35678899999999999998875 999999999
Q ss_pred HHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH--hhcCCCCCCChhHHHhHHHHHHHhhcCCChhH
Q psy12605 438 LGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN--LCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515 (845)
Q Consensus 438 L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n--L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v 515 (845)
|+|++.. +..+..+.+.|+++.|+.++.... .++++.++|+++| +..+
T Consensus 513 L~nLa~~-~~~~~~i~~~g~i~~Lv~lL~~~~-~~~~~~aa~al~nq~~~~~---------------------------- 562 (780)
T 2z6g_A 513 IRNLALC-PANHAPLREQGAIPRLVQLLVRAH-QDTQRRTSMGGTQQQFVEG---------------------------- 562 (780)
T ss_dssp HHHHHSS-HHHHHHHHHTTHHHHHHHHHHHHH-HHHHHTTC------CCSTT----------------------------
T ss_pred HHHHhcC-HHHHHHHHHCCCHHHHHHHHHhcc-hhHHHHHhhccccchhhcc----------------------------
Confidence 9999975 455678889999999999886422 2445555555444 1100
Q ss_pred HHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCC
Q psy12605 516 SIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHP 595 (845)
Q Consensus 516 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~ 595 (845)
..
T Consensus 563 ------------------------------------------------------------------------------~~ 564 (780)
T 2z6g_A 563 ------------------------------------------------------------------------------VR 564 (780)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------cC
Confidence 01
Q ss_pred ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhc
Q psy12605 596 KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSS 675 (845)
Q Consensus 596 ~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (845)
.++++..++.+|.+++. ++.....+.+.|+++.|++++
T Consensus 565 ~~~v~~~a~~aL~~La~-~~~~~~~l~~~~~i~~Lv~lL----------------------------------------- 602 (780)
T 2z6g_A 565 MEEIVEACTGALHILAR-DIHNRIVIRGLNTIPLFVQLL----------------------------------------- 602 (780)
T ss_dssp HHHHHHHHHHHHHHHTT-SHHHHHHHHHTCCHHHHHHGG-----------------------------------------
T ss_pred hHHHHHHHHHHHHHHhc-ChhhHHHHHHCCcHHHHHHHH-----------------------------------------
Confidence 24577889999999985 466667788999999999988
Q ss_pred cccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHH
Q psy12605 676 FQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVI 755 (845)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~ 755 (845)
.+.+++++..|+.+|++++ .+++....+.+.|+++.|+.++++.+++++
T Consensus 603 -----------------------------~~~~~~v~~~a~~aL~~L~--~~~~~~~~i~~~g~i~~L~~Ll~~~~~~Vr 651 (780)
T 2z6g_A 603 -----------------------------YSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEGVA 651 (780)
T ss_dssp -----------------------------GCSCHHHHHHHHHHHHHHH--TSHHHHHHHHHTTCHHHHHHGGGCSCHHHH
T ss_pred -----------------------------cCCCHHHHHHHHHHHHHHh--cCHHHHHHHHHCCCHHHHHHHHcCCCHHHH
Confidence 5677899999999999997 567788888899999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHH
Q psy12605 756 QVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDI 807 (845)
Q Consensus 756 ~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~ 807 (845)
..|+++|.++....+.. |... .+++.+..+..+++. .|..|..+
T Consensus 652 ~~A~~aL~~l~~~~~~~---~~~~----l~~~ll~~l~~~~~~-~w~~~~~~ 695 (780)
T 2z6g_A 652 TYAAAVLFRMSEDKPQD---YKKR----LSVELTSSLFRTEPM-TWNETGDL 695 (780)
T ss_dssp HHHHHHHHHHHTTSCTT---HHHH----HHHHHHHHC---------------
T ss_pred HHHHHHHHHHHcCChHh---hhcc----ccHHHHHHHHhCCCc-ccccCccc
Confidence 99999999999866532 2221 266777887766663 66666555
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-37 Score=344.92 Aligned_cols=410 Identities=44% Similarity=0.672 Sum_probs=366.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhc-CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS-GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~-g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
++.++ +.++++++..+..|+..|+++++...++..+.++.. |++|.|+++|+.++++.+|..|+++|.+++.+++++.
T Consensus 22 l~~l~-~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~ 100 (450)
T 2jdq_A 22 TSDMI-EMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT 100 (450)
T ss_dssp CHHHH-HHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence 78888 899999999999999999999875445566778888 9999999999654489999999999999999888888
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcC
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 204 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~ 204 (845)
..+++.|++|.|+++|+++++++++.|+++|++++.++++.++.+.+.|+++.++.++.++.+..+++.++|+|.+++.+
T Consensus 101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~ 180 (450)
T 2jdq_A 101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180 (450)
T ss_dssp HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence 88999999999999999999999999999999999998889999999999999999999755779999999999999987
Q ss_pred CCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCc
Q psy12605 205 KDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGV 284 (845)
Q Consensus 205 ~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~ 284 (845)
..+........+++|.|+.++.++++. ++..++|+|.+++....+....+.+.|+
T Consensus 181 ~~~~~~~~~~~~~l~~L~~~l~~~~~~-------------------------v~~~a~~~L~~l~~~~~~~~~~~~~~~~ 235 (450)
T 2jdq_A 181 KSPPPEFAKVSPCLNVLSWLLFVSDTD-------------------------VLADACWALSYLSDGPNDKIQAVIDAGV 235 (450)
T ss_dssp SSSCCCGGGTGGGHHHHHHHTTCCCHH-------------------------HHHHHHHHHHHHTSSSHHHHHHHHHTTT
T ss_pred CCCCCCHHHHHHHHHHHHHHHccCCHH-------------------------HHHHHHHHHHHHHCCCcHHHHHHHHcCc
Confidence 644444445589999999999988888 9999999999999988777788889999
Q ss_pred hhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 285 VPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI 364 (845)
Q Consensus 285 i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~ 364 (845)
++.|+.+|.++++.++..|+++|++++.+++...+.+.+.|+++.|+.++.++++.+|..|+++|++++.+.+...+.++
T Consensus 236 i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~ 315 (450)
T 2jdq_A 236 CRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVI 315 (450)
T ss_dssp HHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred HHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999998888888888999999999999999999999999999999988888888889
Q ss_pred hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC-ChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 365 DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG-TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+.++++.|+.++.+. ++.++..|+|+|++++.+ +++..+.+++.|+++.|++++.++++.++..++++|.+++.
T Consensus 316 ~~~~l~~L~~~l~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 390 (450)
T 2jdq_A 316 DANIFPALISILQTA-----EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILR 390 (450)
T ss_dssp HTTHHHHHHHHHHHS-----CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHhcC-----CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 999999999999874 789999999999999975 67788888899999999999999999999999999999987
Q ss_pred CCh-----------HHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 444 DGP-----------QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 444 ~~~-----------~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
..+ .+...+.+.|+++.|..+..+ .+.++.+.+..++.++...
T Consensus 391 ~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~~-~~~~v~~~a~~~l~~~~~~ 444 (450)
T 2jdq_A 391 LGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQSH-ENQEIYQKAFDLIEHYFGT 444 (450)
T ss_dssp HHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHCH-HHHHHHHHHHHHHHHHHCC
T ss_pred hchhhhhccccchhHHHHHHHHcCcHHHHHHHHcC-CCHHHHHHHHHHHHHHCCc
Confidence 543 245678888999998887654 3457788888888887743
|
| >2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=347.92 Aligned_cols=418 Identities=41% Similarity=0.684 Sum_probs=367.0
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhc-CChHHHHHHHhc-CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDA-GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~l~~~-~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
.++.+++.+.++++.+|..|+.+|.++.. ...+..+.+++. ++++.|++++.+. +++.++..|+++|.+++.++
T Consensus 21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~----~~~~v~~~a~~~L~~l~~~~ 96 (450)
T 2jdq_A 21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRK----ENCTLQFESAWVLTNIASGN 96 (450)
T ss_dssp -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCT----TCHHHHHHHHHHHHHHHSSC
T ss_pred cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCC----CCHHHHHHHHHHHHHHhcCC
Confidence 47889999999999999999999999854 222233556777 9999999999875 37899999999999999999
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
++....+++.|+++.|++++.+++++++..|+++|++++.+++..++.+.+.|+++.|+.++.++.+.++++.++|++++
T Consensus 97 ~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~ 176 (450)
T 2jdq_A 97 SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSN 176 (450)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 88888899999999999999999999999999999999999999999999999999999999976778999999999999
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccc
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 561 (845)
++.+..+......+.++++.+..++.+.|+.+... +| +.+++.........+.+.++++.++.++.+++. .++..+
T Consensus 177 l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~--~v~~~a 254 (450)
T 2jdq_A 177 LCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDY--KVVSPA 254 (450)
T ss_dssp HHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCH--HHHHHH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCch--hHHHHH
Confidence 99876444555566889999999999999888765 67 999988766666667778999999999986554 445568
Q ss_pred ccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhh
Q psy12605 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641 (845)
Q Consensus 562 l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 641 (845)
+.+++++..+++...+.+.+.|+++.|..+++++++.+++.|+|+|+|++.+++...+.+++.|++|.|++++
T Consensus 255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l------- 327 (450)
T 2jdq_A 255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISIL------- 327 (450)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHH-------
T ss_pred HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHH-------
Confidence 8999999999998888899999999999999999999999999999999999999999999999999999988
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHh
Q psy12605 642 LNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISN 721 (845)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 721 (845)
.+.++++|.+|+|+|+|
T Consensus 328 ---------------------------------------------------------------~~~~~~v~~~a~~~L~~ 344 (450)
T 2jdq_A 328 ---------------------------------------------------------------QTAEFRTRKEAAWAITN 344 (450)
T ss_dssp ---------------------------------------------------------------HHSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------hcCCHHHHHHHHHHHHH
Confidence 34567899999999999
Q ss_pred hcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHH-------HHHHHHHHHhChHHHHHhhhc
Q psy12605 722 LTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQV-------ETLANMIEECGGLDKIEMLQN 794 (845)
Q Consensus 722 l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~-------~~~~~~~~e~g~~~~L~~l~~ 794 (845)
++..++++....+++.|+++.|+++|+..+++++..++++|.+++..++... ++|...|.+.|+++.|..|++
T Consensus 345 l~~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~l~~l~~ 424 (450)
T 2jdq_A 345 ATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAYGLDKIEFLQS 424 (450)
T ss_dssp HHHHCCHHHHHHHHHHTCHHHHHHGGGSSCHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHCHHHHHHHHC
T ss_pred HHcCCCHHHHHHHHHCCCHHHHHHHhcCCCHHHHHHHHHHHHHHHHhchhhhhccccchhHHHHHHHHcCcHHHHHHHHc
Confidence 9966688889999999999999999999999999999999999998766431 368899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhcCcccCCC
Q psy12605 795 HENVEIYKLAYDIIERYFSEVEDED 819 (845)
Q Consensus 795 ~~~~~v~~~a~~~l~~~~~~~~~~~ 819 (845)
+++.++++.|..+|++||..++|+|
T Consensus 425 ~~~~~v~~~a~~~l~~~~~~~~~~~ 449 (450)
T 2jdq_A 425 HENQEIYQKAFDLIEHYFGTEDEDS 449 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHCCC----
T ss_pred CCCHHHHHHHHHHHHHHCCcccccC
Confidence 9999999999999999997776654
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-37 Score=336.72 Aligned_cols=364 Identities=17% Similarity=0.189 Sum_probs=298.6
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccH-HHHHhcCCHHHHHHhhccCCC-----------hhHHHHHHHH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERSDR-----------PNLQFEAAWA 112 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~-----------~~i~~~a~~~ 112 (845)
.++.++ .++.++|+.. .++++++...++.. ..++++|.+|.||++|+.++. ++++..|+|+
T Consensus 33 ~~~~l~-~~~~~~~~~~------~~~~ll~~~~~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~a 105 (458)
T 3nmz_A 33 MVYSLL-SMLGTHDKDD------MSRTLLAMSSSQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAA 105 (458)
T ss_dssp -------------CCHH------HHHHHHHHHSSTTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHH
T ss_pred HHHHHH-HHhcCCCHHH------HHHHHHHHHcCCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHH
Confidence 367778 8888888873 44444444444445 778899999999999975433 7999999999
Q ss_pred HHHHhcCChhhHHHHHHcCCh----------HHHHHhhCCCC--hh-----HHH-------HHHHHHHHhcCCChhhHHH
Q psy12605 113 LTNIASGTSAQTQEVVAAGAV----------PLFLRLLMSPH--SN-----VCE-------QAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 113 L~~la~~~~~~~~~i~~~g~i----------~~L~~lL~s~~--~~-----v~~-------~a~~~L~nla~~~~~~r~~ 168 (845)
|++|+.++++......+.|++ +.+++++.++. .+ +++ +|+|+|+|++.+ +++|+.
T Consensus 106 l~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~-~e~R~~ 184 (458)
T 3nmz_A 106 LHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFD-EEHRHA 184 (458)
T ss_dssp HHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTS-HHHHHH
T ss_pred HHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCC-HHHHHH
Confidence 999999999999998888888 77888887752 22 555 999999999855 889999
Q ss_pred HHhcCChhhHHhhhcC----------CCCHHHHHHHHHHHHHhhcCCCCCCChh-HHhhHHHHHHhhcccCCchhhHHHH
Q psy12605 169 VINMGVVPPLLSFIKP----------DIPISFLRNVTWVIVNLCRNKDPPPSMS-TIIELLPALNILIHHHDTSVSIYLW 237 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~----------~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~~~~~~~~~~ 237 (845)
+.+.|++++|+.++.. ..+..+++.|+|+|.|||.+.+...... ...|++|.|+.++.+++++
T Consensus 185 i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~------ 258 (458)
T 3nmz_A 185 MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED------ 258 (458)
T ss_dssp HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHH------
T ss_pred HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHH------
Confidence 9999999999999942 1235789999999999998874333222 2357799999999998888
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCCh
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTD 315 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~ 315 (845)
++..|+|+|.+|+.. +.+.+..+.+.|+++.|+.+| .++++.++..|+++|+||+.+++
T Consensus 259 -------------------v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~ 319 (458)
T 3nmz_A 259 -------------------LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT 319 (458)
T ss_dssp -------------------HHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred -------------------HHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence 999999999999985 556778888999999999975 66788999999999999998666
Q ss_pred hhHHHHh-cCCccchhhHhhcCCch----hhHHHHHHHHHHhhc---CChHHHHHHHhcCChHHHHHHhhhcccccCChh
Q psy12605 316 EQTQVIL-NCDALSHFPALLTHPKE----KICKEAVWFLSNITA---GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPN 387 (845)
Q Consensus 316 ~~~~~i~-~~~~l~~L~~lL~~~~~----~~~~~a~~~L~nl~~---~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~ 387 (845)
+.+..+. ..|+++.|+.+|.+.++ ++++.|+|+|+|++. ..++.++.+.+.|+++.|+.+|.++ +..
T Consensus 320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~-----~~~ 394 (458)
T 3nmz_A 320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSH-----SLT 394 (458)
T ss_dssp HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCS-----CHH
T ss_pred HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCC-----ChH
Confidence 6666666 78999999999987654 489999999999987 7888889999999999999999874 788
Q ss_pred HHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 388 LQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 388 v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
++.+|+|+|.|++.++++.+..+++.|+++.|+.++.++++.+++.|+++|.||+.+++
T Consensus 395 v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p 453 (458)
T 3nmz_A 395 IVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP 453 (458)
T ss_dssp HHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence 99999999999999899999999999999999999999999999999999999998764
|
| >3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-34 Score=329.08 Aligned_cols=366 Identities=34% Similarity=0.577 Sum_probs=324.1
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhcC-ChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
.++.+++.+.+.|.+.+..|+..++.+... ..+.++.+++.|++|.|+++|... +++.+|.+|+|+|+||+++++
T Consensus 58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~----~~~~lq~~Aa~aL~nias~~~ 133 (510)
T 3ul1_B 58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT----DCSPIQFESAWALTNIASGTS 133 (510)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCT----TCHHHHHHHHHHHHHHHTSCH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCC----CCHHHHHHHHHHHHHHhcCCH
Confidence 478899999999999999999999987543 334568899999999999999875 478999999999999999999
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCC----ChhHHHHHHHH
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI----PISFLRNVTWV 480 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~----~~~~~~~~~~~ 480 (845)
+.++.+++.|+++.|+++|.++++++++.|+|+|+||+.+++..|+.+.+.|+++.|+.++.... ....++.++|+
T Consensus 134 e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 213 (510)
T 3ul1_B 134 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 213 (510)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998544 24678999999
Q ss_pred HHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccc
Q psy12605 481 IVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558 (845)
Q Consensus 481 l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 558 (845)
++|++++..+......+.+++|.|..++.+.++++... || +.+|+..+..
T Consensus 214 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~---------------------------- 265 (510)
T 3ul1_B 214 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE---------------------------- 265 (510)
T ss_dssp HHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH----------------------------
T ss_pred HHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhh----------------------------
Confidence 99999999888888889999999999999999988765 66 7776654433
Q ss_pred cccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhh
Q psy12605 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRS 638 (845)
Q Consensus 559 ~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 638 (845)
..+.+.+.|+++.|+.++.++++.++..++++|+|++.+++...+.+++.|+++.|+.++
T Consensus 266 ----------------~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL---- 325 (510)
T 3ul1_B 266 ----------------RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL---- 325 (510)
T ss_dssp ----------------HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CT----
T ss_pred ----------------hHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHh----
Confidence 334566778888888888999999999999999999999999999999999999988877
Q ss_pred hhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHH
Q psy12605 639 CKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWA 718 (845)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 718 (845)
.+.++.++++|+|+
T Consensus 326 ------------------------------------------------------------------~~~~~~v~~~A~~a 339 (510)
T 3ul1_B 326 ------------------------------------------------------------------TNPKTNIQKEATWT 339 (510)
T ss_dssp ------------------------------------------------------------------TCSSHHHHHHHHHH
T ss_pred ------------------------------------------------------------------cCCCHHHHHHHHHH
Confidence 56778999999999
Q ss_pred HHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCH
Q psy12605 719 ISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENV 798 (845)
Q Consensus 719 l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~ 798 (845)
|+|++ .+++++...+.+.|+++.|+.+|.+.+.+++..|.++|.++...+... ....+.+.|+++.|..|+.+++.
T Consensus 340 L~nl~-a~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~---~~~~L~~~g~i~~L~~LL~~~d~ 415 (510)
T 3ul1_B 340 MSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE---QIVYLVHCGIIEPLMNLLSAKDT 415 (510)
T ss_dssp HHHHT-TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHH---HHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHH-cCcHHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHH---HHHHHHHCCCHHHHHHHhcCCCH
Confidence 99999 678899999999999999999999999999999999999999765432 35668899999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q psy12605 799 EIYKLAYDIIERYFS 813 (845)
Q Consensus 799 ~v~~~a~~~l~~~~~ 813 (845)
++...+.+.|.+++.
T Consensus 416 ~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 416 KIIQVILDAISNIFQ 430 (510)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888877653
|
| >3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-34 Score=325.41 Aligned_cols=366 Identities=34% Similarity=0.574 Sum_probs=325.4
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhc-CChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
.++.+++.+.+.+++.+..|+..+.++.. ...+.++.+++.|++|.|+++|... +++.++.+|+|+|+|++.+++
T Consensus 77 ~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~----~~~~~q~~Aa~aL~nia~~~~ 152 (529)
T 3tpo_A 77 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT----DCSPIQFESAWALTNIASGTS 152 (529)
T ss_dssp CHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCT----TCHHHHHHHHHHHHHHHTSCH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCC----CCHHHHHHHHHHHHHHHcCCH
Confidence 56788999999999999999999998754 3344568899999999999999875 578999999999999999999
Q ss_pred HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCC----ChhHHHHHHHH
Q psy12605 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI----PISFLRNVTWV 480 (845)
Q Consensus 405 ~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~----~~~~~~~~~~~ 480 (845)
+.+..+++.|+++.|+.++.++++++++.|+|+|+||+.+++.+|+.+.+.|+++.|+.++.... ...+++.++|+
T Consensus 153 ~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~ 232 (529)
T 3tpo_A 153 EQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWT 232 (529)
T ss_dssp HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998544 24678999999
Q ss_pred HHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccc
Q psy12605 481 IVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQ 558 (845)
Q Consensus 481 l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~ 558 (845)
++|+|++..+......+.+++|.|..++.+.++++... || +++++..+..
T Consensus 233 L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~---------------------------- 284 (529)
T 3tpo_A 233 LSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNE---------------------------- 284 (529)
T ss_dssp HHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHH----------------------------
T ss_pred HHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhh----------------------------
Confidence 99999999888888889999999999999999998765 77 7777764433
Q ss_pred cccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhh
Q psy12605 559 KKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRS 638 (845)
Q Consensus 559 ~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~ 638 (845)
..+.+.+.|+++.|+.++.++++.++..++++|+|++.+++.....+++.|+++.|+.++
T Consensus 285 ----------------~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL---- 344 (529)
T 3tpo_A 285 ----------------RIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL---- 344 (529)
T ss_dssp ----------------HHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT----
T ss_pred ----------------hHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHH----
Confidence 334566778888888888899999999999999999999999999999999999999988
Q ss_pred hhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHH
Q psy12605 639 CKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWA 718 (845)
Q Consensus 639 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 718 (845)
.+.++.++++|+|+
T Consensus 345 ------------------------------------------------------------------~~~~~~i~~~a~~a 358 (529)
T 3tpo_A 345 ------------------------------------------------------------------TNPKTNIQKEATWT 358 (529)
T ss_dssp ------------------------------------------------------------------TCSSHHHHHHHHHH
T ss_pred ------------------------------------------------------------------cCCCHHHHHHHHHH
Confidence 56778999999999
Q ss_pred HHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCH
Q psy12605 719 ISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENV 798 (845)
Q Consensus 719 l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~ 798 (845)
|+|++ .+++++...+.+.|++++|+.+|.+.+.+++..|+++|.++...+... ....+.+.|+++.|..|+.+++.
T Consensus 359 L~nl~-~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~---~~~~l~~~g~i~~L~~LL~~~d~ 434 (529)
T 3tpo_A 359 MSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVE---QIVYLVHCGIIEPLMNLLSAKDT 434 (529)
T ss_dssp HHHHH-TSCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH---HHHHHHHTTCHHHHHHGGGCSCH
T ss_pred HHHHh-cccHHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHH---HHHHHHHCcCHHHHHHHhcCCCH
Confidence 99999 678899999999999999999999999999999999999999765432 35668899999999999999999
Q ss_pred HHHHHHHHHHHHhcC
Q psy12605 799 EIYKLAYDIIERYFS 813 (845)
Q Consensus 799 ~v~~~a~~~l~~~~~ 813 (845)
++...+.+.|.+++.
T Consensus 435 ~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 435 KIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888887653
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-34 Score=324.48 Aligned_cols=385 Identities=18% Similarity=0.190 Sum_probs=315.4
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG- 119 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~- 119 (845)
+.+.+++.+| ++|.++++..+..|+.+|++++... +.....+++.|+||.||++| .++++.+|..|+++|.+|+.+
T Consensus 45 ~~~~~i~~LV-~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL-~s~~~~vq~~Aa~AL~nLa~~~ 121 (584)
T 3l6x_A 45 WRQPELPEVI-AMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLL-DHPKKEVHLGACGALKNISFGR 121 (584)
T ss_dssp CCCCCHHHHH-HHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGG-GCSSHHHHHHHHHHHHHHTSSS
T ss_pred cccccHHHHH-HHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHH-CCCCHHHHHHHHHHHHHHHccC
Confidence 3456799999 9999999999999999999987643 45678899999999999999 478899999999999999985
Q ss_pred ChhhHHHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc---------------
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--------------- 183 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~--------------- 183 (845)
+++++..+++.|+||+|+++|.+ ++.++++.|+++|+||+. +++++..+.+ ++++.|++++.
T Consensus 122 ~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k 199 (584)
T 3l6x_A 122 DQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCK 199 (584)
T ss_dssp CHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC--------
T ss_pred CHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-CchhhHHHHh-ccHHHHHHHHhccccccccccccccc
Confidence 68999999999999999999997 578999999999999996 5789999886 57999999871
Q ss_pred --CCCCHHHHHHHHHHHHHhhcCCCC-CCChhHHhhHHHHHHhhccc------CCchhhHHHHHHHhhhChhhHHhhhhh
Q psy12605 184 --PDIPISFLRNVTWVIVNLCRNKDP-PPSMSTIIELLPALNILIHH------HDTSVSIYLWLSIIEKNPQISKILVSK 254 (845)
Q Consensus 184 --~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (845)
+..+..++.+|+++|.||+...+. ...+....|+++.|+.++.+ .+..
T Consensus 200 ~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~----------------------- 256 (584)
T 3l6x_A 200 PRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSK----------------------- 256 (584)
T ss_dssp --CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCH-----------------------
T ss_pred ccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHH-----------------------
Confidence 122468999999999999986633 22233335778899999874 2344
Q ss_pred HHHHHHHHHHHHHhhcCCh-------------------------hhHHHHHhcCchhhHHhhcc-CCchhhHHHHHHHHH
Q psy12605 255 MKILVDTVWALSYLTDGGN-------------------------DQIQMVIDSGVVPSLIPLLS-HKEVKVQTASLRAVG 308 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~~~-------------------------~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~al~~L~ 308 (845)
.++.|+|+|.+|+.... ..++.+.+.++++.|+.+|. +.++.++++|+++|.
T Consensus 257 --~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~ 334 (584)
T 3l6x_A 257 --LVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQ 334 (584)
T ss_dssp --HHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 88899999999886521 11222334455677888884 567999999999999
Q ss_pred HHhcCCh----hhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccc--
Q psy12605 309 NIVTGTD----EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRI-- 382 (845)
Q Consensus 309 nl~~~~~----~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~-- 382 (845)
|++.+.. ..+..+.+.++++.|+.+|.++++.+++.|+|+|+|++.+.. . +.++..+++|.|+++|.+....
T Consensus 335 nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~-~-~~~I~~g~ip~LV~LL~~~~~~~~ 412 (584)
T 3l6x_A 335 NLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR-N-KELIGKHAIPNLVKNLPGGQQNSS 412 (584)
T ss_dssp HHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-C-HHHHHHHHHHHHHHTSSSSSCSGG
T ss_pred HHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh-H-HHHHHhCCHHHHHHHhcCCccccc
Confidence 9998752 334456677999999999999999999999999999988754 3 3455789999999999875210
Q ss_pred -cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcCChHHHHHHHhCCCh
Q psy12605 383 -VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGPQLRDYVINMGVV 458 (845)
Q Consensus 383 -~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l 458 (845)
....++...|+++|.|++.++++..+.+.+.|+++.|+.++.+. .+.+++.|.++|+++..+ .+.+..+.+.|.=
T Consensus 413 ~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~-~elr~~~kk~G~~ 490 (584)
T 3l6x_A 413 WNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGY-KELRKPLEKEGWK 490 (584)
T ss_dssp GTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTS-HHHHHHHHTTTCC
T ss_pred ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcC-HHHHHHHHHcCCC
Confidence 01467889999999999999999999999999999999999986 889999999999999984 5678888877653
|
| >3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-34 Score=319.45 Aligned_cols=368 Identities=17% Similarity=0.182 Sum_probs=305.0
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC-Chh
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD-GPQ 164 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~-~~~ 164 (845)
..+.+|.||++|. ++++.+|..|+++|.+++.++.+++..+++.|+||+|+++|+++++++++.|+++|+||+.. +++
T Consensus 46 ~~~~i~~LV~~L~-s~~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~ 124 (584)
T 3l6x_A 46 RQPELPEVIAMLG-FRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD 124 (584)
T ss_dssp CCCCHHHHHHHTT-CSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred ccccHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence 5678999999994 67899999999999999998899999999999999999999999999999999999999985 689
Q ss_pred hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-----------------
Q psy12605 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH----------------- 227 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~----------------- 227 (845)
++..+++.|+|+.|+.+|.+..+..+++.++++|.+|+...++.. ....+++|.|++++..
T Consensus 125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~--~I~~~alp~Lv~LL~~p~sg~~~~~~~~~k~~~ 202 (584)
T 3l6x_A 125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKM--EIVDHALHALTDEVIIPHSGWEREPNEDCKPRH 202 (584)
T ss_dssp HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHH--HHHHHTHHHHHHHTHHHHHCCC----------C
T ss_pred HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhH--HHHhccHHHHHHHHhcccccccccccccccccc
Confidence 999999999999999999875567899999999999998653322 2335789999998721
Q ss_pred -CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhhccC------Cchhh
Q psy12605 228 -HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPLLSH------KEVKV 299 (845)
Q Consensus 228 -~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~------~~~~v 299 (845)
.+++ ++..|.++|.+|+..+.+.++.+++. |+++.|+.+|.+ .+...
T Consensus 203 ~~d~~-------------------------V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~ 257 (584)
T 3l6x_A 203 IEWES-------------------------VLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKL 257 (584)
T ss_dssp CCCHH-------------------------HHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHH
T ss_pred cccHH-------------------------HHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHH
Confidence 1223 89999999999999887767777775 667899999964 46779
Q ss_pred HHHHHHHHHHHhcCChhh-------------------------HHHHhcCCccchhhHhhc-CCchhhHHHHHHHHHHhh
Q psy12605 300 QTASLRAVGNIVTGTDEQ-------------------------TQVILNCDALSHFPALLT-HPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 300 ~~~al~~L~nl~~~~~~~-------------------------~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~ 353 (845)
++.|+.+|.||+...+.. .+.+.+.++++.++.+|. +.++.+++.|+|+|.|++
T Consensus 258 ~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ 337 (584)
T 3l6x_A 258 VENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337 (584)
T ss_dssp HHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence 999999999998652110 011112234456677884 567999999999999998
Q ss_pred cCChH----HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC---
Q psy12605 354 AGNQA----QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--- 426 (845)
Q Consensus 354 ~~~~~----~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~--- 426 (845)
.+... ....+.+.+++|.|+++|... +..++..|+|+|.|++.+.. .+ .++..|+++.|+++|.++
T Consensus 338 ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~-----~~~v~~~A~~aL~nLs~~~~-~~-~~I~~g~ip~LV~LL~~~~~~ 410 (584)
T 3l6x_A 338 AGRWTYGRYIRSALRQEKALSAIADLLTNE-----HERVVKAASGALRNLAVDAR-NK-ELIGKHAIPNLVKNLPGGQQN 410 (584)
T ss_dssp SSCSHHHHHHHHHHTSHHHHHHHHHGGGCS-----CHHHHHHHHHHHHHHHTTCS-CH-HHHHHHHHHHHHHTSSSSSCS
T ss_pred cCCccccHHHHHHHHHcCcHHHHHHHHcCC-----CHHHHHHHHHHHHHHhCChh-HH-HHHHhCCHHHHHHHhcCCccc
Confidence 87522 222334578899999999874 78999999999999998664 33 345889999999999986
Q ss_pred -----CHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCC-CChhHHHHHHHHHHHhhcCC
Q psy12605 427 -----HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 427 -----~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~~~~~~l~nL~~~~ 488 (845)
+.+++..|+++|+|++..++..+..+.+.|+++.|+.++.+. .+....+.++|+|++|+.++
T Consensus 411 ~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl~~~~ 478 (584)
T 3l6x_A 411 SSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTIWGYK 478 (584)
T ss_dssp GGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHHHTSH
T ss_pred ccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHHHcCH
Confidence 468899999999999999999999999999999999999875 56789999999999998655
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-34 Score=322.27 Aligned_cols=369 Identities=15% Similarity=0.179 Sum_probs=301.6
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+++.++ .+|.+++++.+..|+.+|++++..+ +.....+.+.|++|.|+++|+ ++++.++..|+++|++|+.+++++
T Consensus 2 ~~l~~lv-~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~-s~~~~~~~~A~~aL~nLa~~~~~~ 78 (457)
T 1xm9_A 2 LTIPKAV-QYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLR-SPNQNVQQAAAGALRNLVFRSTTN 78 (457)
T ss_dssp CCHHHHH-HHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTT-SSCHHHHHHHHHHHHHHHSSCHHH
T ss_pred CCHHHHH-HHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCHHH
Confidence 3688999 8999999999999999999987543 334568899999999999995 688999999999999999988999
Q ss_pred HHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc--------CC-------CC
Q psy12605 124 TQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--------PD-------IP 187 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~--------~~-------~~ 187 (845)
+..+++.|++|.|+++|. ++++++++.|+|+|+||+.+ +++|..+.+ |++|.|+.++. ++ .+
T Consensus 79 k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~ 156 (457)
T 1xm9_A 79 KLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVD 156 (457)
T ss_dssp HHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCC
T ss_pred HHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhccccc
Confidence 999999999999999999 88999999999999999987 779999999 99999999993 22 24
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCChhHHh-hHHHHHHhhccc------CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHH
Q psy12605 188 ISFLRNVTWVIVNLCRNKDPPPSMSTII-ELLPALNILIHH------HDTSVSIYLWLSIIEKNPQISKILVSKMKILVD 260 (845)
Q Consensus 188 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~-~~l~~L~~ll~~------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (845)
.++++.|+|+|.|||.+. ......... |++|.|+.++.+ .+.. +++.
T Consensus 157 ~~v~~~a~~aL~nLs~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~-------------------------~~e~ 210 (457)
T 1xm9_A 157 PEVFFNATGCLRNLSSAD-AGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK-------------------------SVEN 210 (457)
T ss_dssp HHHHHHHHHHHHHHTTSH-HHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCT-------------------------THHH
T ss_pred HHHHHHHHHHHHHHccCH-HHHHHHHHcCCCHHHHHHHHHhhccccCCchH-------------------------HHHH
Confidence 578889999999999873 222223333 999999999985 3344 3444
Q ss_pred HHHHHHHhhcC--------------------------------------------------ChhhHHHHHhcCchhhHHh
Q psy12605 261 TVWALSYLTDG--------------------------------------------------GNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 261 a~~~L~~l~~~--------------------------------------------------~~~~~~~~~~~g~i~~Lv~ 290 (845)
++++|.+++.. .+...+.+.+.|+++.|+.
T Consensus 211 a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~ 290 (457)
T 1xm9_A 211 CMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290 (457)
T ss_dssp HHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHH
T ss_pred HHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHH
Confidence 44444444310 1123345567788899999
Q ss_pred hccC-CchhhHHHHHHHHHHHhcCChhh-----HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 291 LLSH-KEVKVQTASLRAVGNIVTGTDEQ-----TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI 364 (845)
Q Consensus 291 lL~~-~~~~v~~~al~~L~nl~~~~~~~-----~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~ 364 (845)
+|.+ +++.++++|+++|+|++.++... +..+.+.|++|.|+++|.+++.++++.|+|+|+|++.+. .. +.++
T Consensus 291 lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~-~~-~~~i 368 (457)
T 1xm9_A 291 LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP-LL-HRVM 368 (457)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG-GG-HHHH
T ss_pred HHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCH-HH-HHHH
Confidence 9954 46899999999999999876432 334457899999999999999999999999999997753 33 4556
Q ss_pred hcCChHHHHHHhhhccccc-CChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC-CHHHHHHHHHHHHHhh
Q psy12605 365 DAGLLPKIIANLQKVGRIV-LRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP-HSNVCEQAVWALGNII 442 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~~-~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~-~~~v~~~a~~~L~nl~ 442 (845)
..++++.|+++|....... .+.++...+++++.++..++++..+.+.+.|+++.|++++.++ ++.+++.|.++|.++.
T Consensus 369 ~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~ 448 (457)
T 1xm9_A 369 GNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMW 448 (457)
T ss_dssp HHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTS
T ss_pred HHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence 6789999999998752110 1246888999999999999999999999999999999999999 9999999999999998
Q ss_pred cCC
Q psy12605 443 GDG 445 (845)
Q Consensus 443 ~~~ 445 (845)
.+.
T Consensus 449 ~~~ 451 (457)
T 1xm9_A 449 SSK 451 (457)
T ss_dssp SST
T ss_pred cch
Confidence 765
|
| >1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-33 Score=316.50 Aligned_cols=373 Identities=17% Similarity=0.221 Sum_probs=306.7
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 168 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~ 168 (845)
.+|.|+.+|+ ++++++|..|+++|.+++.++++.+..+++.|++|.|+++|++++++++..|+++|+||+.++++++..
T Consensus 3 ~l~~lv~~L~-s~~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~ 81 (457)
T 1xm9_A 3 TIPKAVQYLS-SQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE 81 (457)
T ss_dssp CHHHHHHHHH-SSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred CHHHHHHHHC-CCCHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 5899999995 667899999999999999887777889999999999999999999999999999999999988999999
Q ss_pred HHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc--------CCchhhHHHHHHH
Q psy12605 169 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH--------HDTSVSIYLWLSI 240 (845)
Q Consensus 169 i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--------~~~~~~~~~~~~l 240 (845)
+++.|++|.|+++|....+.++++.++|+|.|++.+. ........ |++|.|++++.. ...+.+
T Consensus 82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~-~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~------- 152 (457)
T 1xm9_A 82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSR------- 152 (457)
T ss_dssp HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHH-HHHHHHHHHTTHHHHTCC---------------
T ss_pred HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCH-HhHHHHHh-ccHHHHHHHHhccccccccCccchhc-------
Confidence 9999999999999984446799999999999999984 33333444 999999999932 211100
Q ss_pred hhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhhccC------CchhhHHHHHHHHHHHhcC
Q psy12605 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPLLSH------KEVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~------~~~~v~~~al~~L~nl~~~ 313 (845)
+ ..+..+...|+|+|.+++.. ++.++.+.+. |+++.|+.+|.+ .+..++..++.+|.|++..
T Consensus 153 -e---------~~~~~v~~~a~~aL~nLs~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~ 221 (457)
T 1xm9_A 153 -E---------VVDPEVFFNATGCLRNLSSA-DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYR 221 (457)
T ss_dssp -----------CCCHHHHHHHHHHHHHHTTS-HHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTT
T ss_pred -c---------cccHHHHHHHHHHHHHHccC-HHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccc
Confidence 0 00112777999999999987 6778888887 999999999975 4567889999999998631
Q ss_pred C--------------------------------------------------hhhHHHHhcCCccchhhHhhcC-CchhhH
Q psy12605 314 T--------------------------------------------------DEQTQVILNCDALSHFPALLTH-PKEKIC 342 (845)
Q Consensus 314 ~--------------------------------------------------~~~~~~i~~~~~l~~L~~lL~~-~~~~~~ 342 (845)
. +...+.+.+.++++.++.+|.+ .++.++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~ 301 (457)
T 1xm9_A 222 LDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATL 301 (457)
T ss_dssp HHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHH
T ss_pred hhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhCcchHHHHHHHHhhcCCHHHH
Confidence 0 1122345566778888899965 568999
Q ss_pred HHHHHHHHHhhcCChHH---H-HHHH-hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChH
Q psy12605 343 KEAVWFLSNITAGNQAQ---V-QAVI-DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 417 (845)
Q Consensus 343 ~~a~~~L~nl~~~~~~~---~-~~l~-~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~ 417 (845)
+.|+|+|+|++.++... . +.++ +.+++|.|+++|.++ +.+++.+|+|+|.|++.+. +. +.++..|+++
T Consensus 302 e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-----~~~v~~~A~~aL~nls~~~-~~-~~~i~~~~i~ 374 (457)
T 1xm9_A 302 EACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-----NSDVVRSGASLLSNMSRHP-LL-HRVMGNQVFP 374 (457)
T ss_dssp HHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-----CHHHHHHHHHHHHHHHTSG-GG-HHHHHHHTHH
T ss_pred HHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-----CHhHHHHHHHHHHHHhcCH-HH-HHHHHHhhhH
Confidence 99999999999875432 2 3344 589999999999885 7899999999999998853 33 4455678999
Q ss_pred HHHHhhCCCCH------HHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC
Q psy12605 418 LFLRLLMSPHS------NVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489 (845)
Q Consensus 418 ~Lv~lL~~~~~------~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~ 489 (845)
.|+++|.++++ ++...++++|+++...++.....+.++|+++.|+.++.+..+.++.+.++|+|.+++.+++
T Consensus 375 ~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~L~~~~~~~~i~~~A~~~L~~~~~~~~ 452 (457)
T 1xm9_A 375 EVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452 (457)
T ss_dssp HHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHHcCCCcHHHHHHHHHHHHHHHcchh
Confidence 99999998743 6888999999999998888999999999999999999887667999999999999997663
|
| >4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-31 Score=306.76 Aligned_cols=366 Identities=34% Similarity=0.564 Sum_probs=322.2
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCCh-HHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQ-AQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~-~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
..++.++..|.++++.++..|+++|.+++.... +....+++.|++|.|+++|.+. +++.++..|+|+|++++.++
T Consensus 74 ~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~v~~~A~~~L~~l~~~~ 149 (528)
T 4b8j_A 74 ESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRE----DFPQLQFEAAWALTNIASGT 149 (528)
T ss_dssp -CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCT----TCHHHHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCC----CCHHHHHHHHHHHHHHhCCC
Confidence 468899999999999999999999999977654 5667888999999999999875 35899999999999999999
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
++.+..+++.|+++.|+.+|.++++.++..|+|+|++++.+++..+..+.+.|+++.|+.++....+..+++.++|+|++
T Consensus 150 ~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~ 229 (528)
T 4b8j_A 150 SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSN 229 (528)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999777778999999999999
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccc
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 561 (845)
||.+. +........++++.|..++.+.++++... +| +.+++.
T Consensus 230 L~~~~-~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~----------------------------------- 273 (528)
T 4b8j_A 230 FCRGK-PQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSD----------------------------------- 273 (528)
T ss_dssp HHCSS-SCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTS-----------------------------------
T ss_pred HHcCC-CCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHc-----------------------------------
Confidence 99987 45566777889999999999888887664 44 555543
Q ss_pred ccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhh
Q psy12605 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641 (845)
Q Consensus 562 l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 641 (845)
+.+...+.+.+.|+++.|+.++.++++.++..|+++|+|++.+++...+.+++.|++|.|+++|.
T Consensus 274 ---------~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~------ 338 (528)
T 4b8j_A 274 ---------GTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLT------ 338 (528)
T ss_dssp ---------SCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHH------
T ss_pred ---------CCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHc------
Confidence 33344456777889999999999999999999999999999999999999999999999999883
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCC-CccchhHHHHHHH
Q psy12605 642 LNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQG-EFQTQKEAAWAIS 720 (845)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~l~ 720 (845)
+. ++.++++|+|+|+
T Consensus 339 ----------------------------------------------------------------~~~~~~v~~~A~~~L~ 354 (528)
T 4b8j_A 339 ----------------------------------------------------------------QNLKKSIKKEACWTIS 354 (528)
T ss_dssp ----------------------------------------------------------------SCCCHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------CCCcHHHHHHHHHHHH
Confidence 34 7899999999999
Q ss_pred hhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHH
Q psy12605 721 NLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEI 800 (845)
Q Consensus 721 ~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v 800 (845)
|++ .++++....+++.|+++.|+.+|...+..++..|+++|.++...+... ....+.+.|+++.|..++.++++.+
T Consensus 355 nl~-~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~---~~~~l~~~~~i~~L~~lL~~~d~~v 430 (528)
T 4b8j_A 355 NIT-AGNKDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHD---QIKYLVSEGCIKPLCDLLICPDIRI 430 (528)
T ss_dssp HHH-TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHH---HHHHHHHTTCHHHHHHGGGCSCHHH
T ss_pred HHH-CCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHH---HHHHHHHCCCHHHHHHHHcCCCHHH
Confidence 999 578888999999999999999999999999999999999999874332 3556778999999999999999999
Q ss_pred HHHHHHHHHHhcC
Q psy12605 801 YKLAYDIIERYFS 813 (845)
Q Consensus 801 ~~~a~~~l~~~~~ 813 (845)
+..|.+.|.+++.
T Consensus 431 ~~~al~~L~~l~~ 443 (528)
T 4b8j_A 431 VTVCLEGLENILK 443 (528)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9998888777653
|
| >3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.4e-32 Score=297.08 Aligned_cols=378 Identities=16% Similarity=0.158 Sum_probs=297.1
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCC------------hhHHHHHHHHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPH------------SNVCEQAVWALG 156 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~------------~~v~~~a~~~L~ 156 (845)
.++.|+..+. +.++. .....|..++.. ++.+..+++.|++|.|+++|+.++ ++++..|+|+|.
T Consensus 33 ~~~~l~~~~~-~~~~~---~~~~~ll~~~~~-~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ 107 (458)
T 3nmz_A 33 MVYSLLSMLG-THDKD---DMSRTLLAMSSS-QDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALH 107 (458)
T ss_dssp -------------CCH---HHHHHHHHHHSS-TTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-CCCHH---HHHHHHHHHHcC-CcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHH
Confidence 4788888884 44444 367788888864 678899999999999999999743 699999999999
Q ss_pred HhcCCChhhHHHHHhcCCh----------hhHHhhhcCCC-CHH-----HHH-------HHHHHHHHhhcCCCCCCChhH
Q psy12605 157 NIIGDGPQLRDYVINMGVV----------PPLLSFIKPDI-PIS-----FLR-------NVTWVIVNLCRNKDPPPSMST 213 (845)
Q Consensus 157 nla~~~~~~r~~i~~~g~i----------~~Lv~ll~~~~-~~~-----~~~-------~a~~~L~~l~~~~~~~~~~~~ 213 (845)
||+...++..+...+.|++ +.+++++.+.. ..+ ++. +|+|+|.|++.+. ..+....
T Consensus 108 ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~ 186 (458)
T 3nmz_A 108 NIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMN 186 (458)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHH
T ss_pred HHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHH
Confidence 9998888887777777777 66667776542 111 334 8999999998764 4455666
Q ss_pred HhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh-cCchhhHHhhc
Q psy12605 214 IIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID-SGVVPSLIPLL 292 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~Lv~lL 292 (845)
..|+++.|+.++..+.... . ..++ ..+..++..|+|+|.+|+..++.....+.. .|+++.|+.+|
T Consensus 187 ~~G~l~~Lv~LL~~~~~~~-----~---~~~~------~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL 252 (458)
T 3nmz_A 187 ELGGLQAIAELLQVDCEMY-----G---LTND------HYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQL 252 (458)
T ss_dssp HTTHHHHHHHHHHHHHHHS-----T---TCCC------HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGG
T ss_pred HCCCHHHHHHHHhhhhccc-----c---cccC------CCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHH
Confidence 7899999999995310000 0 0000 001128899999999999887766666644 56699999999
Q ss_pred cCCchhhHHHHHHHHHHHhcC-ChhhHHHHhcCCccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHHHHH-hcCCh
Q psy12605 293 SHKEVKVQTASLRAVGNIVTG-TDEQTQVILNCDALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQAVI-DAGLL 369 (845)
Q Consensus 293 ~~~~~~v~~~al~~L~nl~~~-~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~-~~~~i 369 (845)
.++++.++..|+++|+|++.+ ++..+..+.+.|+++.|+++| .+.++.+++.|+.+|+|++.+.++....+. ..|++
T Consensus 253 ~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal 332 (458)
T 3nmz_A 253 KSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGAL 332 (458)
T ss_dssp GCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHH
T ss_pred hCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcH
Confidence 999999999999999999985 567888999999999999975 567889999999999999886666666776 79999
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhc---CChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIAS---GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
+.|+++|....+. ....++..|+|+|.|++. ++++.++.+++.|+++.|+.+|.+++..+++.|+|+|+|++..++
T Consensus 333 ~~Lv~LL~~~~~~-~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~ 411 (458)
T 3nmz_A 333 AFLVGTLTYRSQT-NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNP 411 (458)
T ss_dssp HHHHHHTTCCCSS-STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCH
T ss_pred HHHHHHhcCCCCc-chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCH
Confidence 9999999875210 011589999999999997 788999999999999999999999999999999999999998889
Q ss_pred HHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 447 QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 447 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+.+..+.+.|+++.|+.++... +..+++.++|+|.||+.+.
T Consensus 412 ~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~ 452 (458)
T 3nmz_A 412 KDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANR 452 (458)
T ss_dssp HHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCC
Confidence 9999999999999999999764 4588999999999999876
|
| >1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-30 Score=296.83 Aligned_cols=370 Identities=32% Similarity=0.514 Sum_probs=322.0
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCC-hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGN-QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~-~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
+.++.++..|.+.++.++..|+++|.++.... ......+++.|++|.|+++|.+. +++.++..|+|+|++++.++
T Consensus 87 ~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~----~~~~v~~~A~~~L~~l~~~~ 162 (530)
T 1wa5_B 87 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN----QPEMLQLEAAWALTNIASGT 162 (530)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT----SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCC----CCHHHHHHHHHHHHHHhCCC
Confidence 67899999999999999999999999996653 34456788899999999999875 37899999999999999999
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
++....+++.|+++.|+.+|.++++.++..|+|+|++++.+++..++.+...|+++.|+.++.+ .+.++++.++|+|++
T Consensus 163 ~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~v~~~a~~~L~~ 241 (530)
T 1wa5_B 163 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNS-NKPSLIRTATWTLSN 241 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGS-CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhcc-CCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987 556899999999999
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccc
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 561 (845)
|+.+..+........++++.|..++.+.|+++... +| +.+++..
T Consensus 242 L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~---------------------------------- 287 (530)
T 1wa5_B 242 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDG---------------------------------- 287 (530)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSS----------------------------------
T ss_pred HhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCC----------------------------------
Confidence 99987555667777889999999999888887654 55 5555543
Q ss_pred ccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhh
Q psy12605 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641 (845)
Q Consensus 562 l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 641 (845)
.+...+.+.+.|+++.|+.++.++++.++..|+++|+|++.+++...+.+++.|++|.|+.+|
T Consensus 288 ----------~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL------- 350 (530)
T 1wa5_B 288 ----------PQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL------- 350 (530)
T ss_dssp ----------CHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-------
T ss_pred ----------CHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHH-------
Confidence 233345566778899999999999999999999999999999998888899999999999888
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHh
Q psy12605 642 LNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISN 721 (845)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 721 (845)
.+.++.++.+|+|+|++
T Consensus 351 ---------------------------------------------------------------~~~~~~vr~~A~~aL~~ 367 (530)
T 1wa5_B 351 ---------------------------------------------------------------SSPKENIKKEACWTISN 367 (530)
T ss_dssp ---------------------------------------------------------------TCSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------cCCCHHHHHHHHHHHHH
Confidence 45678999999999999
Q ss_pred hcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHH
Q psy12605 722 LTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIY 801 (845)
Q Consensus 722 l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~ 801 (845)
++ .++++....+++.|+++.|+.+|.+.++.++..|+++|.++...+... ......+.+.|+++.|..++.++++.++
T Consensus 368 l~-~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 445 (530)
T 1wa5_B 368 IT-AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR-PDIIRYLVSQGCIKPLCDLLEIADNRII 445 (530)
T ss_dssp HT-TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC-THHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred HH-cCCHHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHCCCHHHHHHHHhCCCHHHH
Confidence 99 568888888999999999999999999999999999999999865320 0134566789999999999999999999
Q ss_pred HHHHHHHHHhcCcc
Q psy12605 802 KLAYDIIERYFSEV 815 (845)
Q Consensus 802 ~~a~~~l~~~~~~~ 815 (845)
..|.+.|.+++...
T Consensus 446 ~~al~aL~~l~~~~ 459 (530)
T 1wa5_B 446 EVTLDALENILKMG 459 (530)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999998887543
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=260.49 Aligned_cols=276 Identities=18% Similarity=0.191 Sum_probs=239.4
Q ss_pred CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCC----------CCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 141 MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD----------IPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 141 ~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~----------~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
..+....+.+|+|+|+|++.+ +++|+.+.+.|+++.|+.+|..+ .+..+++.|+|+|.|++.+.+....
T Consensus 42 ~~~~~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~ 120 (354)
T 3nmw_A 42 PAPVEHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKA 120 (354)
T ss_dssp CCGGGGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred CCcchHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 334456677999999999977 78999999999999999999521 2357899999999999987743333
Q ss_pred hh-HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC-ChhhHHHHHhcCchhhH
Q psy12605 211 MS-TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG-GNDQIQMVIDSGVVPSL 288 (845)
Q Consensus 211 ~~-~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~i~~L 288 (845)
.. ...|++|.|+.++.+++++ ++..|+|+|.+|+.. +.+.+..+.+.|+++.|
T Consensus 121 ~i~~~~GaIp~LV~LL~s~~~~-------------------------v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~L 175 (354)
T 3nmw_A 121 TLCSMKGCMRALVAQLKSESED-------------------------LQQVIASVLRNLSWRADVNSKKTLREVGSVKAL 175 (354)
T ss_dssp HHHHCHHHHHHHHHGGGCSCHH-------------------------HHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHH
T ss_pred HHHHcCCcHHHHHHHHCCCCHH-------------------------HHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHH
Confidence 22 2357799999999998888 999999999999986 45677888899999999
Q ss_pred Hhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHh-cCCccchhhHhhcCCch----hhHHHHHHHHHHhhc---CChHH
Q psy12605 289 IPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVIL-NCDALSHFPALLTHPKE----KICKEAVWFLSNITA---GNQAQ 359 (845)
Q Consensus 289 v~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~-~~~~l~~L~~lL~~~~~----~~~~~a~~~L~nl~~---~~~~~ 359 (845)
+.+| +++++.++..|+++|+|++.++++.+..+. ..|+++.|+.+|.+.++ ++++.|+++|+|++. ..++.
T Consensus 176 v~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~ 255 (354)
T 3nmw_A 176 MECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDH 255 (354)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHH
Confidence 9975 667889999999999999986666666666 78999999999987654 589999999999987 68888
Q ss_pred HHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHH
Q psy12605 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439 (845)
Q Consensus 360 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 439 (845)
++.+.+.|+++.|+++|.++ +..++.+|+|+|.|++.++++.+..+.+.|+++.|++++.++++.+++.|+++|.
T Consensus 256 ~~~i~~~g~i~~Lv~lL~~~-----~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~ 330 (354)
T 3nmw_A 256 RQILRENNCLQTLLQHLKSH-----SLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALR 330 (354)
T ss_dssp HHHHHTTTHHHHHHHHTTCS-----CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHcCC-----ChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 89999999999999999874 7899999999999999989999999999999999999999999999999999999
Q ss_pred HhhcCChH
Q psy12605 440 NIIGDGPQ 447 (845)
Q Consensus 440 nl~~~~~~ 447 (845)
|++.+.+.
T Consensus 331 nL~~~~~~ 338 (354)
T 3nmw_A 331 NLMANRPA 338 (354)
T ss_dssp HHHTTCCG
T ss_pred HHHcCCHH
Confidence 99987654
|
| >3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-28 Score=257.22 Aligned_cols=277 Identities=17% Similarity=0.159 Sum_probs=233.9
Q ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC----------CChhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy12605 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS----------DRPNLQFEAAWALTNIASGTSAQTQEVVA 129 (845)
Q Consensus 60 ~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~la~~~~~~~~~i~~ 129 (845)
..+.+|+.+|.++... ....+.+++.|+++.|+.+|..+ .++.+|..|+++|.+++.++++++..+..
T Consensus 47 ~~~~~A~~aL~nls~d--~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~ 124 (354)
T 3nmw_A 47 HQICPAVCVLMKLSFD--EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS 124 (354)
T ss_dssp GTHHHHHHHHHHHHTS--HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455789999998553 35678899999999999999421 24679999999999999987777777765
Q ss_pred -cCChHHHHHhhCCCChhHHHHHHHHHHHhcCC-ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC-C
Q psy12605 130 -AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK-D 206 (845)
Q Consensus 130 -~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~-~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~-~ 206 (845)
.|+||.|+++|+++++++++.|+++|+||+.. ++++|..+.+.|+||.|+++|.+..+..+++.|+++|.||+... +
T Consensus 125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~ 204 (354)
T 3nmw_A 125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 204 (354)
T ss_dssp CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHH
T ss_pred cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChh
Confidence 45699999999999999999999999999974 67899999999999999998654446689999999999999844 2
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc---CChhhHHHHHhcC
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD---GGNDQIQMVIDSG 283 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~---~~~~~~~~~~~~g 283 (845)
....+....|++|.|++++.+.++.. ..+++..|+|+|.+++. ..++.++.+.+.|
T Consensus 205 nk~~i~~~~Gai~~Lv~lL~~~~~~~---------------------~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g 263 (354)
T 3nmw_A 205 NKADICAVDGALAFLVGTLTYRSQTN---------------------TLAIIESGGGILRNVSSLIATNEDHRQILRENN 263 (354)
T ss_dssp HHHHHHHSTTHHHHHHHHTTCCCSSS---------------------CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTT
T ss_pred hhHHHHHhcCcHHHHHHHhccCCCcc---------------------cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcC
Confidence 22222225799999999998754310 00178899999999997 5777788899999
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 359 (845)
+++.|+.+|.+++..++..|+++|+|++.++++.++.+.+.|+++.|++++.++++.+++.|+++|.|++.+.+..
T Consensus 264 ~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~ 339 (354)
T 3nmw_A 264 CLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK 339 (354)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred CHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999888888999999999999999999999999999999999999887664
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=222.47 Aligned_cols=243 Identities=26% Similarity=0.367 Sum_probs=222.7
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
|.+|.|+++|+ ++++++|..|+++|.+++..+++++..+++.|+++.|+++|++++++++..|+++|++++.++++.+.
T Consensus 2 ~~i~~L~~~L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~ 80 (252)
T 4hxt_A 2 NDVEKLVKLLT-STDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK 80 (252)
T ss_dssp CHHHHHHHHTT-CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred CcHHHHHHHHc-CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence 56899999995 56699999999999999998888999999999999999999999999999999999999988899999
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~ 247 (845)
.+.+.|+++.++.++.++ +..++..|+++|.+++...+.........++++.|++++.++++.
T Consensus 81 ~~~~~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~---------------- 143 (252)
T 4hxt_A 81 AIVDAGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSE---------------- 143 (252)
T ss_dssp HHHHTTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHH----------------
T ss_pred HHHHCCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHH----------------
Confidence 999999999999999976 568999999999999976544444455678999999999998888
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
++..++++|.+++...++..+.+.+.|+++.|+.++.++++.++..|+.+|++++.+++..++.+.+.|++
T Consensus 144 ---------~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i 214 (252)
T 4hxt_A 144 ---------VQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGV 214 (252)
T ss_dssp ---------HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHH
T ss_pred ---------HHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCH
Confidence 99999999999999888887888899999999999999999999999999999999888888899999999
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhcCCh
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 357 (845)
+.|+.++.++++.++..|+++|+|++...+
T Consensus 215 ~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 215 EVLQKLLTSTDSEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHTCB
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999976543
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=5e-24 Score=241.65 Aligned_cols=469 Identities=13% Similarity=0.132 Sum_probs=318.7
Q ss_pred HHHHHHHHHHHhcCChhhHHHH-HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC
Q psy12605 106 QFEAAWALTNIASGTSAQTQEV-VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP 184 (845)
Q Consensus 106 ~~~a~~~L~~la~~~~~~~~~i-~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~ 184 (845)
...+..+|..+---.++....+ ...|.++.+.+.+.+......+.+++-|.+.+..+..+|+.+.+ +.++.|...++.
T Consensus 229 ~~~~~~~l~~lfPi~p~~~s~lfl~e~~~~~l~~~~~~~~~~~~~~a~L~lLsaACi~~~cR~~I~~-~~~~~L~~~l~~ 307 (778)
T 3opb_A 229 LSIIVKTLSELYPSLTTLCSEIFLTKGLSKLFKKRVFEEQDLQFTKELLRLLSSACIDETMRTYITE-NYLQLLERSLNV 307 (778)
T ss_dssp HHHHHHHHHHHTTTTHHHHHHHHSTTTHHHHHHHHHHSSCCHHHHHHHHHHHHHHCCSHHHHHHHHH-HHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHccccHHHHHHHHHhcccchHHHHHHHHHHHHHhCCcHHHHHHHH-hHHHHHHHHhcc
Confidence 4556666666654446666554 45788899998886654444444444444444466778888855 567999999865
Q ss_pred CCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHH
Q psy12605 185 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWA 264 (845)
Q Consensus 185 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~ 264 (845)
. .++..|+-+|+.+....+... .......+.+.+.+.+++.+ -+..|++.
T Consensus 308 ~---~ir~lAavvL~KL~~~~~~~~--~si~~La~~~~~~L~~~~~~-------------------------~~~~AvEg 357 (778)
T 3opb_A 308 E---DVQIYSALVLVKTWSFTKLTC--INLKQLSEIFINAISRRIVP-------------------------KVEMSVEA 357 (778)
T ss_dssp G---GGHHHHHHHHHHHTGGGTCTT--CCHHHHHHHHHHHTTTCCHH-------------------------HHHHHHHH
T ss_pred H---HHHHHHHHHHHHHhcCCCCCc--CcHHHHHHHHHHHHhcCCcc-------------------------HHHHHHHH
Confidence 3 677777777777766553322 23456888888888877666 67899999
Q ss_pred HHHhhcCChhhHHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHH
Q psy12605 265 LSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICK 343 (845)
Q Consensus 265 L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~ 343 (845)
|+|++...........+.++++.|+.+++. .+..+...++.+|.|++...+.... +...+..|..+.+...++...
T Consensus 358 LaYLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~---e~~~l~~Lk~~A~~~~p~~~~ 434 (778)
T 3opb_A 358 LAYLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXX---XXXXXXXXXXXXXXXXPAADK 434 (778)
T ss_dssp HHHHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCC---CCC------------------
T ss_pred HHHHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccch---hhhhhhhhhhhccccCcccCc
Confidence 999998766554455555789999999985 7788999999999999976543111 012233333333221111110
Q ss_pred HHHHHHHHhhcCChH-HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHh
Q psy12605 344 EAVWFLSNITAGNQA-QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRL 422 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~-~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~l 422 (845)
... .+.+= .+..+ .++.+.+.|++|.|+.++.+. ++.+|..|+|+|.+++. +++.+..+++.|+++.|+++
T Consensus 435 ~d~-~~~~~-~~v~~~~~~~l~eaGvIp~Lv~Ll~S~-----s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~l 506 (778)
T 3opb_A 435 VGA-EKAAK-EDILLFNEKYILRTELISFLKREMHNL-----SPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEY 506 (778)
T ss_dssp CCT-HHHHH-HHHHHHHHHHTTTTTHHHHHHHHGGGS-----CHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHH
T ss_pred ccc-cccch-HHHHHHHHHHHHHCcCHHHHHHHHcCC-----CHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHH
Confidence 000 00000 00112 346678899999999999884 89999999999999975 47899999999999999999
Q ss_pred hCCCCHH---HHHHHHHHHHHhhcC-ChHHHHHHH---hCCChHHHHhccCCCCChh------------H-HHHHHHHHH
Q psy12605 423 LMSPHSN---VCEQAVWALGNIIGD-GPQLRDYVI---NMGVVPPLLSFIKPDIPIS------------F-LRNVTWVIV 482 (845)
Q Consensus 423 L~~~~~~---v~~~a~~~L~nl~~~-~~~~~~~l~---~~g~l~~L~~ll~~~~~~~------------~-~~~~~~~l~ 482 (845)
+.+.... ++..|+.+|++++.. +|.. .+- ..|++++|+.+|....... + ...++.+|.
T Consensus 507 L~s~~~~~~~~k~~AA~ALArLlis~np~~--~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT 584 (778)
T 3opb_A 507 LANKQDIGEPIRILGCRALTRMLIFTNPGL--IFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT 584 (778)
T ss_dssp TTCC---CCHHHHHHHHHHHHHHHTSCHHH--HSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred HhcCCCcchHHHHHHHHHHHHHHhcCCHHH--HcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence 9988654 899999999999953 3433 111 1388999999997311100 1 223444444
Q ss_pred HhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccc
Q psy12605 483 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQH 562 (845)
Q Consensus 483 nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l 562 (845)
||+....+
T Consensus 585 NLAs~~~n------------------------------------------------------------------------ 592 (778)
T 3opb_A 585 NLASSETS------------------------------------------------------------------------ 592 (778)
T ss_dssp HHHHCCSH------------------------------------------------------------------------
T ss_pred HHhcCCcc------------------------------------------------------------------------
Confidence 44432200
Q ss_pred cccccccCCChhhHHHHHhC-CcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCC------ChHHHHHHhh
Q psy12605 563 SIYMCVSPGTDEQTQVILNC-DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG------LLPKIIANLQ 635 (845)
Q Consensus 563 ~~l~nl~~~~~~~~~~l~~~-~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~------~l~~L~~ll~ 635 (845)
..++..+.++.. |+++.|..++.+.++.++++|+|+++||+.+.....+.+.+.+ .++.|+.++
T Consensus 593 --------~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll- 663 (778)
T 3opb_A 593 --------DGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLL- 663 (778)
T ss_dssp --------HHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGG-
T ss_pred --------cchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHH-
Confidence 002233556664 8899999999999999999999999999975432112333222 255566555
Q ss_pred hhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHH
Q psy12605 636 KRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEA 715 (845)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 715 (845)
.++|.++|+.|
T Consensus 664 ---------------------------------------------------------------------~s~D~~~r~AA 674 (778)
T 3opb_A 664 ---------------------------------------------------------------------QLSDVESQRAV 674 (778)
T ss_dssp ---------------------------------------------------------------------GCSCHHHHHHH
T ss_pred ---------------------------------------------------------------------cCCCHHHHHHH
Confidence 67889999999
Q ss_pred HHHHHhhcccCCHHHHHHHHHc-CCchHHhhhhcc--ccHHHHHHHHHHHHHHHHhh
Q psy12605 716 AWAISNLTISGNRDQVAKLVQE-GVIPPFCDLLSC--KDAQVIQVVLDGINNMLKMA 769 (845)
Q Consensus 716 ~~~l~~l~~~~~~~~~~~l~~~-~~i~~L~~~L~~--~d~~~~~~al~~L~~l~~~~ 769 (845)
+|+|+|++ .+++.....+++. ++++.++.+|.+ .+++++..++.+++||+...
T Consensus 675 agALAnLt-s~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~ 730 (778)
T 3opb_A 675 AAIFANIA-TTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI 730 (778)
T ss_dssp HHHHHHHH-HHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhc-CCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence 99999997 5678888999977 899999999999 89999999999999999743
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.9e-24 Score=221.55 Aligned_cols=240 Identities=33% Similarity=0.537 Sum_probs=218.9
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
...+.++..| .++++++|..|+++|.++.+.+.+.+..+++.|++|.|+++|++++++++..|+++|++++.++++.+.
T Consensus 12 ~~~~~~~~~L-~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~ 90 (252)
T 4db8_A 12 SELPQMTQQL-NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 90 (252)
T ss_dssp CSHHHHHHHH-HSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred chHHHHHHHH-cCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence 4589999999 477889999999999887666677888999999999999999999999999999999999988899999
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~ 247 (845)
.+.+.|+++.|+.++.++ +..++..|+|+|.+++.+.+.........+++|.|+.++.++++.
T Consensus 91 ~i~~~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~---------------- 153 (252)
T 4db8_A 91 AVIDAGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQ---------------- 153 (252)
T ss_dssp HHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHH----------------
T ss_pred HHHHcCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHH----------------
Confidence 999999999999999987 568999999999999987744334556678999999999998888
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
++..++|+|.+++..+++....+.+.|+++.|+.+|.++++.++..|+.+|++++.+++..+..+.+.|++
T Consensus 154 ---------v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i 224 (252)
T 4db8_A 154 ---------ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGAL 224 (252)
T ss_dssp ---------HHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHH
T ss_pred ---------HHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcH
Confidence 99999999999999888888888899999999999999999999999999999998888888899999999
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
+.|+.++.+.++.++..|+++|.+++.
T Consensus 225 ~~L~~ll~~~~~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 225 EKLEQLQSHENEKIQKEAQEALEKLQS 251 (252)
T ss_dssp HHHHTTTTCSSSHHHHTHHHHHHTTC-
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999964
|
| >4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.3e-23 Score=213.47 Aligned_cols=243 Identities=27% Similarity=0.386 Sum_probs=227.8
Q ss_pred hHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC
Q psy12605 216 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK 295 (845)
Q Consensus 216 ~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 295 (845)
+.+|.|+.++.+++++ ++..|+++|.+++....+....+.+.|+++.|+.+|.++
T Consensus 2 ~~i~~L~~~L~~~~~~-------------------------~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~ 56 (252)
T 4hxt_A 2 NDVEKLVKLLTSTDSE-------------------------TQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST 56 (252)
T ss_dssp CHHHHHHHHTTCSCHH-------------------------HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS
T ss_pred CcHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC
Confidence 4688999999998887 999999999999998887888888999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHH
Q psy12605 296 EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375 (845)
Q Consensus 296 ~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~l 375 (845)
++.++..|+.+|++++.+++..+..+.+.|+++.++.++.++++.++..|+++|.+++...+.....+.+.|+++.|+++
T Consensus 57 ~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~ 136 (252)
T 4hxt_A 57 DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKL 136 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999998888898999999999999999
Q ss_pred hhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC
Q psy12605 376 LQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455 (845)
Q Consensus 376 L~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 455 (845)
+.+. ++.++..++++|++++.++++....+.+.|+++.|+.++.++++.++..|+++|++++..++..+..+.+.
T Consensus 137 l~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~ 211 (252)
T 4hxt_A 137 LTST-----DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDA 211 (252)
T ss_dssp TTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHT
T ss_pred HcCC-----CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC
Confidence 9874 79999999999999999998888999999999999999999999999999999999999899999999999
Q ss_pred CChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC
Q psy12605 456 GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 489 (845)
Q Consensus 456 g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~ 489 (845)
|+++.|+.++.+.+ .++++.++|+|+||+....
T Consensus 212 ~~i~~L~~ll~~~~-~~v~~~a~~~L~~l~~~~~ 244 (252)
T 4hxt_A 212 GGVEVLQKLLTSTD-SEVQKEAQRALENIKSGGW 244 (252)
T ss_dssp THHHHHHHGGGCSC-HHHHHHHHHHHHHHHHTCB
T ss_pred CCHHHHHHHHCCCc-HHHHHHHHHHHHHHHcCCC
Confidence 99999999998654 5899999999999998764
|
| >4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} | Back alignment and structure |
|---|
Probab=99.91 E-value=3.2e-23 Score=213.74 Aligned_cols=240 Identities=35% Similarity=0.566 Sum_probs=220.3
Q ss_pred hHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC
Q psy12605 216 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK 295 (845)
Q Consensus 216 ~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 295 (845)
...+.+..++.+++++ ++..|+++|.++.....+..+.+.+.|+++.|+.+|.++
T Consensus 12 ~~~~~~~~~L~s~~~~-------------------------~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~ 66 (252)
T 4db8_A 12 SELPQMTQQLNSDDMQ-------------------------EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP 66 (252)
T ss_dssp CSHHHHHHHHHSSCSS-------------------------HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS
T ss_pred chHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC
Confidence 4578888999999999 999999999765554666777888999999999999999
Q ss_pred chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHH
Q psy12605 296 EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIAN 375 (845)
Q Consensus 296 ~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~l 375 (845)
++.++..|+.+|++++.+++..+..+.+.|+++.|+.+|.++++.++..|+++|++++.+.+.....+.+.|+++.|+++
T Consensus 67 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~l 146 (252)
T 4db8_A 67 NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQL 146 (252)
T ss_dssp CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHG
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHH
Confidence 99999999999999999888889999999999999999999999999999999999988877766888999999999999
Q ss_pred hhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC
Q psy12605 376 LQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM 455 (845)
Q Consensus 376 L~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~ 455 (845)
+.+. ++.++..|+|+|++++.++++....+.+.|+++.|++++.++++.++..|+++|++++..++..+..+.+.
T Consensus 147 L~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~ 221 (252)
T 4db8_A 147 LSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEA 221 (252)
T ss_dssp GGCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HhCC-----CHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC
Confidence 9874 78999999999999999999999999999999999999999999999999999999999899999999999
Q ss_pred CChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 456 GVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 456 g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
|+++.|+.++.+.+ .++++.++|+|+||+.
T Consensus 222 g~i~~L~~ll~~~~-~~v~~~A~~~L~~l~~ 251 (252)
T 4db8_A 222 GALEKLEQLQSHEN-EKIQKEAQEALEKLQS 251 (252)
T ss_dssp THHHHHHTTTTCSS-SHHHHTHHHHHHTTC-
T ss_pred CcHHHHHHHhCCCC-HHHHHHHHHHHHHHhc
Confidence 99999999998754 4899999999999985
|
| >3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.1e-22 Score=225.23 Aligned_cols=402 Identities=14% Similarity=0.145 Sum_probs=299.2
Q ss_pred hcHHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh
Q psy12605 44 VNLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA 122 (845)
Q Consensus 44 ~~i~~lv~~~l~~-~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~ 122 (845)
.++-.++.+.+.+ .+.......+..|... +.+ ...+..+..++++.|.++++ + ..+|..|+.+|.++.+.+..
T Consensus 254 e~~~~~l~~~~~~~~~~~~~~a~L~lLsaA-Ci~--~~cR~~I~~~~~~~L~~~l~-~--~~ir~lAavvL~KL~~~~~~ 327 (778)
T 3opb_A 254 KGLSKLFKKRVFEEQDLQFTKELLRLLSSA-CID--ETMRTYITENYLQLLERSLN-V--EDVQIYSALVLVKTWSFTKL 327 (778)
T ss_dssp TTHHHHHHHHHHSSCCHHHHHHHHHHHHHH-CCS--HHHHHHHHHHHHHHHHHHTT-S--GGGHHHHHHHHHHHTGGGTC
T ss_pred ccHHHHHHHHHhcccchHHHHHHHHHHHHH-hCC--cHHHHHHHHhHHHHHHHHhc-c--HHHHHHHHHHHHHHhcCCCC
Confidence 3333333366654 4444444455555443 333 34577778889999999994 2 58999999999998864322
Q ss_pred hHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHh-cCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 123 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN-MGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
....+. ...+.+.+.|..++.+-+..|++.|+.++.+ ++.|+.+++ .|+++.|+.+++...+.++...++.+|.|+
T Consensus 328 ~~~si~--~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NL 404 (778)
T 3opb_A 328 TCINLK--QLSEIFINAISRRIVPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANL 404 (778)
T ss_dssp TTCCHH--HHHHHHHHHTTTCCHHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHT
T ss_pred CcCcHH--HHHHHHHHHHhcCCccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence 211222 2678888888887777799999999999955 678888875 467999999998644557899999999999
Q ss_pred hcCCCCCCC--------------------------------------hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhh
Q psy12605 202 CRNKDPPPS--------------------------------------MSTIIELLPALNILIHHHDTSVSIYLWLSIIEK 243 (845)
Q Consensus 202 ~~~~~~~~~--------------------------------------~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~ 243 (845)
+.+.+.... .....|++|.|+.++.++++.
T Consensus 405 t~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~------------ 472 (778)
T 3opb_A 405 STLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPN------------ 472 (778)
T ss_dssp TCCCCCCCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHH------------
T ss_pred cCCCcccchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHH------------
Confidence 997653211 011236667777777666666
Q ss_pred ChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchh---hHHHHHHHHHHHhcCChhhHHH
Q psy12605 244 NPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVK---VQTASLRAVGNIVTGTDEQTQV 320 (845)
Q Consensus 244 ~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~---v~~~al~~L~nl~~~~~~~~~~ 320 (845)
++..++|+|.+++.. .+.+..+++.|+++.|+.+|.+.... .+..|+.+|.++....+.. ..
T Consensus 473 -------------~re~A~~aL~nLS~d-~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~-~~ 537 (778)
T 3opb_A 473 -------------CKQQVVRIIYNITRS-KNFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPG-LI 537 (778)
T ss_dssp -------------HHHHHHHHHHHHHTS-GGGHHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHH-HH
T ss_pred -------------HHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHH-HH
Confidence 999999999999865 56677888999999999999776543 8999999999998543321 12
Q ss_pred Hhc---CCccchhhHhhcC-Cch-------------hhHHHHHHHHHHhhcCC----hHHHHHHHhc-CChHHHHHHhhh
Q psy12605 321 ILN---CDALSHFPALLTH-PKE-------------KICKEAVWFLSNITAGN----QAQVQAVIDA-GLLPKIIANLQK 378 (845)
Q Consensus 321 i~~---~~~l~~L~~lL~~-~~~-------------~~~~~a~~~L~nl~~~~----~~~~~~l~~~-~~i~~Lv~lL~~ 378 (845)
+-. .|++++|+.+|.. +.. -.+.+|+.+|.|++... ++.++.++.. |+++.|..++.+
T Consensus 538 f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s 617 (778)
T 3opb_A 538 FKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLD 617 (778)
T ss_dssp SSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGC
T ss_pred cCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhC
Confidence 211 3899999999983 221 12779999999999886 3456777875 999999999987
Q ss_pred cccccCChhHHHHHHHHHHHHhcCChHhHHHHHHc------CChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHH
Q psy12605 379 VGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAA------GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 452 (845)
Q Consensus 379 ~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~------g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l 452 (845)
+ +..+|..|+++++|++.+.....+.+.+. +.++.|+.++.+++.+++..|.|+|++++..++.....+
T Consensus 618 ~-----n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~l 692 (778)
T 3opb_A 618 E-----NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKEL 692 (778)
T ss_dssp S-----SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred C-----CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 4 78999999999999997443222344322 247889999999999999999999999987777766666
Q ss_pred HhC-CChHHHHhccCCC-CChhHHHHHHHHHHHhhc
Q psy12605 453 INM-GVVPPLLSFIKPD-IPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 453 ~~~-g~l~~L~~ll~~~-~~~~~~~~~~~~l~nL~~ 486 (845)
.+. ++++.++.++... .+.+++..++.++.||+.
T Consensus 693 l~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~ 728 (778)
T 3opb_A 693 LTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFE 728 (778)
T ss_dssp TTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHT
T ss_pred HHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 666 8999999999874 667999999999999996
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.5e-23 Score=251.04 Aligned_cols=598 Identities=13% Similarity=0.118 Sum_probs=381.3
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChH
Q psy12605 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 134 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~ 134 (845)
.+.++.+|..|+..|++.+...-. ....-....+-+.+++.|. +.++.+|..++.+++.++....... -.+.++
T Consensus 58 ~~~~~~vR~~a~~~Lkn~i~~~w~-~~~~~~~~~ik~~ll~~l~-~~~~~vr~~~a~~i~~ia~~~~~~~----wp~ll~ 131 (852)
T 4fdd_A 58 KSEDEPTRSLSGLILKNNVKAHFQ-NFPNGVTDFIKSECLNNIG-DSSPLIRATVGILITTIASKGELQN----WPDLLP 131 (852)
T ss_dssp TTSCHHHHHHHHHHHHHHTTTSGG-GCCHHHHHHHHHHHHTTTT-CSSHHHHHHHHHHHHHHHHHTTTTT----CTTHHH
T ss_pred CCCChHHHHHHHHHHHHHHHHccC-CCCHHHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHhcCccc----cHHHHH
Confidence 567889999999999998764211 1111123345677788884 6778999999999999987431110 135789
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHH----hcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI----NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~----~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
.|++.+.++++.+++.++.+|+.++.+.+.....-. -...++.++.+++++ +..+|..|+++|.++..... ...
T Consensus 132 ~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-~~~vR~~A~~aL~~~~~~~~-~~~ 209 (852)
T 4fdd_A 132 KLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-SPKIRSHAVACVNQFIISRT-QAL 209 (852)
T ss_dssp HHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-SHHHHHHHHHHHHTTTTTTC-HHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhccc-HHH
Confidence 999999999999999999999999965433211100 113567777777765 56899999999998876532 111
Q ss_pred hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHh
Q psy12605 211 MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP 290 (845)
Q Consensus 211 ~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~ 290 (845)
.......++.+..++.+++++ ++..++++|..++...++......+ ++++.++.
T Consensus 210 ~~~~~~~l~~l~~~~~d~~~~-------------------------vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~ 263 (852)
T 4fdd_A 210 MLHIDSFIENLFALAGDEEPE-------------------------VRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQ 263 (852)
T ss_dssp HTSHHHHHHHHHHHHTCCCHH-------------------------HHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCHH-------------------------HHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHH
Confidence 122347788888888888887 9999999999998766554332222 47778888
Q ss_pred hccCCchhhHHHHHHHHHHHhcCChhhHHHHhc--CCccchhhHhh-----------cC-----------CchhhHHHHH
Q psy12605 291 LLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN--CDALSHFPALL-----------TH-----------PKEKICKEAV 346 (845)
Q Consensus 291 lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~--~~~l~~L~~lL-----------~~-----------~~~~~~~~a~ 346 (845)
.+.+.++.++..|+.++.+++... ..+..+.. ...++.++..+ .+ .+..+|+.|.
T Consensus 264 ~~~~~~~~vr~~a~e~l~~l~~~~-~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~ 342 (852)
T 4fdd_A 264 RTQDQDENVALEACEFWLTLAEQP-ICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSA 342 (852)
T ss_dssp HHTCSSHHHHHHHHHHHHHHTTST-THHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHH
T ss_pred HccCCcHHHHHHHHHHHHHHhcch-hHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHH
Confidence 888889999999999999997643 12221111 13456666665 22 1224688888
Q ss_pred HHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCC
Q psy12605 347 WFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP 426 (845)
Q Consensus 347 ~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~ 426 (845)
.+|..++...++. ++ ..+++.+.+.+.+ .++.+|..|++++++++.+..+.... .-.+.++.++.++.++
T Consensus 343 ~~L~~la~~~~~~---~~-~~l~~~l~~~l~~-----~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~ 412 (852)
T 4fdd_A 343 AALDVLANVYRDE---LL-PHILPLLKELLFH-----HEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK 412 (852)
T ss_dssp HHHHHHHHHHGGG---GH-HHHHHHHHHHHTC-----SSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHhccHH---HH-HHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC
Confidence 8888885432211 11 1245555566655 47999999999999999887654332 2245789999999999
Q ss_pred CHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHH
Q psy12605 427 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNI 506 (845)
Q Consensus 427 ~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ 506 (845)
++.||..++|++++++...........-.+.++.|+..+.+. +..++..++|++.+++....+. -...+..+++.|..
T Consensus 413 ~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~~~~-l~~~l~~ll~~L~~ 490 (852)
T 4fdd_A 413 KALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEACTE-LVPYLAYILDTLVF 490 (852)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHHGGG-GGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHhhHh-hHhHHHHHHHHHHH
Confidence 999999999999999863211000001123566777777654 5689999999999999765321 23345667777766
Q ss_pred hhcCCChhHH----HHHH-H-------------------------HhhhcCchhh---------HHHHhhh-------hh
Q psy12605 507 LIHHHDTSVS----IYLW-L-------------------------SIIEKNPQIS---------KILVSKM-------KV 540 (845)
Q Consensus 507 ll~~~d~~v~----~~~~-l-------------------------~~l~~~~~~~---------~~~~~~~-------~~ 540 (845)
++...+.... ..+. + ..+.+..... ....... .+
T Consensus 491 ~l~~~~~~~~~~~~~ai~~l~~~~~~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~~~~~~l~~i~~~~g~~~~~~~~~i 570 (852)
T 4fdd_A 491 AFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPV 570 (852)
T ss_dssp HHHHCCHHHHHHHHHHHHHHHHHHGGGGCCHHHHHHHHHHHHHHHHHSCTTCTTHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 6654332211 1110 1 0111111100 0000011 12
Q ss_pred hHHHHhhhcc-----------C----CCCcccccccccccccccCCC-hhhHHHHHhCCcccchHHhhcCCChhHHHHHH
Q psy12605 541 CSRYLYYLSH-----------N----SGPMSCQKKQHSIYMCVSPGT-DEQTQVILNCDALSHFPALLTHPKEKICKEAV 604 (845)
Q Consensus 541 ~~~L~~ll~~-----------~----~~~~~~~~~~l~~l~nl~~~~-~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~ 604 (845)
.+.++..+.+ + ..+...+..++..++.++.+- .+....+.+.++++.+..++.++++.++..++
T Consensus 571 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~d~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~vr~~a~ 650 (852)
T 4fdd_A 571 YQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSF 650 (852)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHGGGGHHHHHTCCHHHHHHHHTTCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcccCCCcchHHHHHHHHHHHHHHHHhHhHHHHhcCCcHHHHHHHHhCCCChhHHHHHH
Confidence 2223333321 1 112223344566666665433 33333444678999999999999999999999
Q ss_pred HHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchh
Q psy12605 605 WFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRV 684 (845)
Q Consensus 605 ~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 684 (845)
++++.++..........+.. ++|.+.+.+
T Consensus 651 ~~l~~l~~~~~~~~~~~l~~-~lp~l~~~l-------------------------------------------------- 679 (852)
T 4fdd_A 651 ALLGDLTKACFQHVKPCIAD-FMPILGTNL-------------------------------------------------- 679 (852)
T ss_dssp HHHHHHHHHCGGGTGGGHHH-HHHHHHHTC--------------------------------------------------
T ss_pred HHHHHHHHHhhHHHHHHHHH-HHHHHHHHc--------------------------------------------------
Confidence 99999984433322222211 233333222
Q ss_pred ccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccc--cHHHHHHHHHHH
Q psy12605 685 AATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK--DAQVIQVVLDGI 762 (845)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~--d~~~~~~al~~L 762 (845)
...++.++..|+|+++.++..... .....+ ..+++.|+.+|++. ...+++++..+|
T Consensus 680 --------------------~~~~~~v~~~a~~alg~i~~~~~~-~~~p~~-~~il~~L~~~l~~~~~~~~~~~~a~~~i 737 (852)
T 4fdd_A 680 --------------------NPEFISVCNNATWAIGEISIQMGI-EMQPYI-PMVLHQLVEIINRPNTPKTLLENTAITI 737 (852)
T ss_dssp --------------------CTTSHHHHHHHHHHHHHHHHHHGG-GGGGGT-HHHHHHHHHHHTCSSCCHHHHHHHHHHH
T ss_pred --------------------CccchHHHHHHHHHHHHHHHHhhH-hHHHHH-HHHHHHHHHHhCCCCCCchHHHHHHHHH
Confidence 556788999999999999833221 122222 36788889988875 458999999999
Q ss_pred HHHHHhhHHH
Q psy12605 763 NNMLKMADAQ 772 (845)
Q Consensus 763 ~~l~~~~~~~ 772 (845)
.+|...++..
T Consensus 738 grl~~~~~~~ 747 (852)
T 4fdd_A 738 GRLGYVCPQE 747 (852)
T ss_dssp HHHHHHCHHH
T ss_pred HHHHHhCHHH
Confidence 9999886553
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.7e-22 Score=207.45 Aligned_cols=230 Identities=15% Similarity=0.256 Sum_probs=187.2
Q ss_pred ChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHh
Q psy12605 385 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 463 (845)
Q Consensus 385 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~-lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ 463 (845)
+.+-+..|+..|.+++.. .++...+...|+++.|+. +|.+++++++..|+|+|++++.+++.+++.+.+.|+++.|+.
T Consensus 53 ~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~ 131 (296)
T 1xqr_A 53 DQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLR 131 (296)
T ss_dssp HHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHH
Confidence 345678888889988874 357778899999999999 999999999999999999999999888888777777777776
Q ss_pred ccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHH
Q psy12605 464 FIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSR 543 (845)
Q Consensus 464 ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~ 543 (845)
+|.++
T Consensus 132 LL~~~--------------------------------------------------------------------------- 136 (296)
T 1xqr_A 132 LLDRD--------------------------------------------------------------------------- 136 (296)
T ss_dssp HHHHC---------------------------------------------------------------------------
T ss_pred HHccC---------------------------------------------------------------------------
Confidence 66422
Q ss_pred HHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHH
Q psy12605 544 YLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 623 (845)
Q Consensus 544 L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~ 623 (845)
+++.+++.|+|+|+|++.+++...+.|.+
T Consensus 137 ---------------------------------------------------~~~~v~~~A~~ALsnl~~~~~~~~~~~~~ 165 (296)
T 1xqr_A 137 ---------------------------------------------------ACDTVRVKALFAISCLVREQEAGLLQFLR 165 (296)
T ss_dssp ---------------------------------------------------SCHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ---------------------------------------------------CCHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 23457778888888888888887888999
Q ss_pred CCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhcc
Q psy12605 624 AGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMF 703 (845)
Q Consensus 624 ~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (845)
.|++|.|+.+|
T Consensus 166 ~ggi~~L~~lL--------------------------------------------------------------------- 176 (296)
T 1xqr_A 166 LDGFSVLMRAM--------------------------------------------------------------------- 176 (296)
T ss_dssp TTHHHHHHHHH---------------------------------------------------------------------
T ss_pred CCCHHHHHHHH---------------------------------------------------------------------
Confidence 99999999988
Q ss_pred CCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHH-------HH
Q psy12605 704 FPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVE-------TL 776 (845)
Q Consensus 704 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~-------~~ 776 (845)
.+.++.++..|+|+|.+++ .++++....+++.|++++|+.+|...|.++++.++.+|.+|+...+.... .+
T Consensus 177 -~~~d~~v~~~A~~aLs~L~-~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l 254 (296)
T 1xqr_A 177 -QQQVQKLKVKSAFLLQNLL-VGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGL 254 (296)
T ss_dssp -HSSCHHHHHHHHHHHHHHH-HHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCH
T ss_pred -cCCCHHHHHHHHHHHHHHH-hCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHH
Confidence 4578899999999999999 45788899999999999999999999999999999999999987543211 12
Q ss_pred HHHHHHhChHHHHHhhhcCC-CHHHHHHHHHHHHHhcCcccC
Q psy12605 777 ANMIEECGGLDKIEMLQNHE-NVEIYKLAYDIIERYFSEVED 817 (845)
Q Consensus 777 ~~~~~e~g~~~~L~~l~~~~-~~~v~~~a~~~l~~~~~~~~~ 817 (845)
...+++ .++.++.++ +.+++++|..++++||..++|
T Consensus 255 ~~lL~~-----~~~~lq~~e~~~e~~~~~~~il~~~f~~~~~ 291 (296)
T 1xqr_A 255 EELLRH-----RCQLLQQHEEYQEELEFCEKLLQTCFSSPAD 291 (296)
T ss_dssp HHHHHH-----HHHHHTTCGGGHHHHHHHHHHHHHHCC----
T ss_pred HHHHHH-----HHHHccchHHHHHHHHHHHHHHHHHcCCCCC
Confidence 333433 356777676 789999999999999976543
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.1e-20 Score=215.51 Aligned_cols=569 Identities=13% Similarity=0.112 Sum_probs=394.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC--Chhh
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG--TSAQ 123 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~--~~~~ 123 (845)
+..++ ..+.++++..|..|+..+..+...... .-....++|.|...+ ++++++|..++.+|..++.. .+++
T Consensus 12 i~~l~-~~l~s~~~~~R~~A~~~l~~i~~~~~~----~~~~~~l~~~L~~~~--d~~~~vr~~~~~~L~~~~~~~~~~~~ 84 (588)
T 1b3u_A 12 IAVLI-DELRNEDVQLRLNSIKKLSTIALALGV----ERTRSELLPFLTDTI--YDEDEVLLALAEQLGTFTTLVGGPEY 84 (588)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHTHHHHHHHSCH----HHHHHTHHHHHHHTC--CCCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred HHHHH-HHhhcccHHHHHHHHHhHHHHHHHhCH----HHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhccCcHHH
Confidence 56777 899999999999999999887643211 111234677777766 46789999999999987642 1211
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
....++.|..++.++++.+|..|..+|++++...+.. . .....++.+..+..++ ....|..++.++..++.
T Consensus 85 -----~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~-~~~~R~~a~~~l~~~~~ 155 (588)
T 1b3u_A 85 -----VHCLLPPLESLATVEETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYP 155 (588)
T ss_dssp -----GGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCS-SHHHHHHHGGGHHHHTT
T ss_pred -----HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHH
Confidence 2347788888888899999999999999999765431 1 1222355555665554 55788899999998876
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
... ......++|.+..++.++++. ++..++.+|..++...... .....
T Consensus 156 ~~~----~~~~~~l~~~l~~l~~d~~~~-------------------------VR~~a~~~l~~l~~~~~~~---~~~~~ 203 (588)
T 1b3u_A 156 RVS----SAVKAELRQYFRNLCSDDTPM-------------------------VRRAAASKLGEFAKVLELD---NVKSE 203 (588)
T ss_dssp TSC----HHHHHHHHHHHHHHHTCSCHH-------------------------HHHHHHHHHHHHHHTSCHH---HHHHT
T ss_pred hcC----HHHHHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHHHHHhcHH---hHHHH
Confidence 542 234567888888888888888 8899999999887654321 12457
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+++.+..++.++++.++..|+.+|+.++...+.. .....++|.+..++.+++..+|..++.+|..++..... ..
T Consensus 204 l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~---~~ 277 (588)
T 1b3u_A 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP---EI 277 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH---HH
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc---cc
Confidence 7888899999999999999999999997543221 11224678888888888999999999999998653211 12
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH-hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA-QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
....+++.++.++.+ .++.++..|++++..++...+. ..........++.+..++.++++.+|..++++|+.++
T Consensus 278 ~~~~l~~~l~~~l~d-----~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~ 352 (588)
T 1b3u_A 278 TKTDLVPAFQNLMKD-----CEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHTHHHHHHHHHTC-----SSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred chhHHHHHHHHHhCC-----CcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 334678889999876 4789999999999999864332 1211233456788999999999999999999999987
Q ss_pred cCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH--
Q psy12605 443 GDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW-- 520 (845)
Q Consensus 443 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~-- 520 (845)
..-.. .......++.+..++++. +.+++..++.++..++.... .......++|.+..++.+.+..++..+.
T Consensus 353 ~~~~~---~~~~~~l~p~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~---~~~~~~~~lp~l~~~~~d~~~~vr~~~~~~ 425 (588)
T 1b3u_A 353 PILGK---DNTIEHLLPLFLAQLKDE-CPEVRLNIISNLDCVNEVIG---IRQLSQSLLPAIVELAEDAKWRVRLAIIEY 425 (588)
T ss_dssp HHHCH---HHHHHHTHHHHHHHHTCS-CHHHHHHHHTTCHHHHHHSC---HHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHhhH---hHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHHHHhcC---HHHHHHHHHHHHHHHhcCCCchHHHHHHHH
Confidence 52111 111223667777877654 45778888888887776432 1123356777777777666555544321
Q ss_pred HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHH
Q psy12605 521 LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKIC 600 (845)
Q Consensus 521 l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~ 600 (845)
+..+. ..+.. + .....+++.+..++.+++..+|
T Consensus 426 l~~l~--------------------~~~~~----------------------~-----~~~~~l~~~l~~~l~d~~~~Vr 458 (588)
T 1b3u_A 426 MPLLA--------------------GQLGV----------------------E-----FFDEKLNSLCMAWLVDHVYAIR 458 (588)
T ss_dssp HHHHH--------------------HHHCG----------------------G-----GCCHHHHHHHHHGGGCSSHHHH
T ss_pred HHHHH--------------------HHcCH----------------------H-----HHHHHHHHHHHHHhcCCcHHHH
Confidence 21111 11100 0 0001245677788888999999
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCc
Q psy12605 601 KEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTS 680 (845)
Q Consensus 601 ~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (845)
..|+.+++.++...... ..-..++|.+.+++
T Consensus 459 ~~a~~~l~~l~~~~~~~---~~~~~llp~l~~~~---------------------------------------------- 489 (588)
T 1b3u_A 459 EAATSNLKKLVEKFGKE---WAHATIIPKVLAMS---------------------------------------------- 489 (588)
T ss_dssp HHHHHHHHHHHHHHCHH---HHHHHTHHHHHHTT----------------------------------------------
T ss_pred HHHHHHHHHHHHHhCch---hHHHHHHHHHHHHh----------------------------------------------
Confidence 99999999987432111 11123445444332
Q ss_pred cchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHH
Q psy12605 681 PLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLD 760 (845)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~ 760 (845)
.+.++.+|..++++++.++....++ .....+++.|...+++.+++++..+++
T Consensus 490 ------------------------~~~~~~~R~~a~~~l~~l~~~~~~~----~~~~~~~~~l~~~l~d~~~~Vr~~a~~ 541 (588)
T 1b3u_A 490 ------------------------GDPNYLHRMTTLFCINVLSEVCGQD----ITTKHMLPTVLRMAGDPVANVRFNVAK 541 (588)
T ss_dssp ------------------------TCSCHHHHHHHHHHHHHHHHHHHHH----HHHHHTHHHHHHGGGCSCHHHHHHHHH
T ss_pred ------------------------hCCCHHHHHHHHHHHHHHHHhcCHH----HHHHHHHHHHHhhCCCCCchHHHHHHH
Confidence 5667889999999999998322211 133468899999999999999999999
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHh
Q psy12605 761 GINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERY 811 (845)
Q Consensus 761 ~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~ 811 (845)
+|..+....+.. +......+.|..+.++++.+|+..|.+.+..+
T Consensus 542 ~l~~l~~~~~~~-------~~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 542 SLQKIGPILDNS-------TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHHHGGGSCHH-------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhchh-------hhHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 999998754332 11234556777788889999999999999865
|
| >4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=4.7e-21 Score=233.19 Aligned_cols=659 Identities=13% Similarity=0.093 Sum_probs=390.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhc--cCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLE--RSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
+.+++ ....++|...|..|-..|..+-. . + |..+.|..++. .+.++.+|..|+..|.+.....-..
T Consensus 15 l~~~l-~~~~s~d~~~r~~Ae~~L~~~~~-~--p--------~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~ 82 (852)
T 4fdd_A 15 ILQLL-KESQSPDTTIQRTVQQKLEQLNQ-Y--P--------DFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQN 82 (852)
T ss_dssp HHHHH-HHHTCSCHHHHHHHHHHHHHHTT-S--H--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGG
T ss_pred HHHHH-HHHhCcCHHHHHHHHHHHHHHHh-C--C--------CHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHccCC
Confidence 44555 55578899999999999987522 1 1 23556667764 3567899999999999887532111
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
...-.....-+.+++.|.++++.+|..++.+++.++...... .-.+.++.++..+.++ +...+..++.+|..+++
T Consensus 83 ~~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~ia~~~~~~----~wp~ll~~L~~~l~~~-~~~~r~~al~~L~~i~~ 157 (852)
T 4fdd_A 83 FPNGVTDFIKSECLNNIGDSSPLIRATVGILITTIASKGELQ----NWPDLLPKLCSLLDSE-DYNTCEGAFGALQKICE 157 (852)
T ss_dssp CCHHHHHHHHHHHHTTTTCSSHHHHHHHHHHHHHHHHHTTTT----TCTTHHHHHHHHHSCS-SHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCcc----ccHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHH
Confidence 111111234566777888899999999999999998543110 0124577888888776 45789999999999998
Q ss_pred CCCCCC----ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 204 NKDPPP----SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 204 ~~~~~~----~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
...... ........+|.+.+++.++++. ++..|++++..+...........
T Consensus 158 ~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~-------------------------vR~~A~~aL~~~~~~~~~~~~~~ 212 (852)
T 4fdd_A 158 DSAEILDSDVLDRPLNIMIPKFLQFFKHSSPK-------------------------IRSHAVACVNQFIISRTQALMLH 212 (852)
T ss_dssp HHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHH-------------------------HHHHHHHHHHTTTTTTCHHHHTS
T ss_pred HhHHHhchhhhcchHHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHHHHHhcccHHHHHH
Confidence 653210 0011456888899988888777 88899999987765443221111
Q ss_pred HhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH
Q psy12605 280 IDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 359 (845)
-.++++.+..++.++++.++..|+++|+.++...+.......+ ++++.++..+.+.++.+|..|+.++..++.... .
T Consensus 213 -~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~-~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~-~ 289 (852)
T 4fdd_A 213 -IDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMH-NIVEYMLQRTQDQDENVALEACEFWLTLAEQPI-C 289 (852)
T ss_dssp -HHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHH-HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTT-H
T ss_pred -HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHH-HHHHHHHHHccCCcHHHHHHHHHHHHHHhcchh-H
Confidence 1256778888888999999999999999998755432211111 467788888888999999999999999875432 1
Q ss_pred HHHHHh---cCChHHHHHHhh----------hc---cccc----CChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHH
Q psy12605 360 VQAVID---AGLLPKIIANLQ----------KV---GRIV----LRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLF 419 (845)
Q Consensus 360 ~~~l~~---~~~i~~Lv~lL~----------~~---~~~~----~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L 419 (845)
.+ .+. ..++|.++..+. .. ++.+ .++.++..|+.++..++...++. +. ...++.+
T Consensus 290 ~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~---~~-~~l~~~l 364 (852)
T 4fdd_A 290 KD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE---LL-PHILPLL 364 (852)
T ss_dssp HH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHH
T ss_pred HH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH---HH-HHHHHHH
Confidence 12 222 234566666652 11 0000 24567899999999988643321 11 1357788
Q ss_pred HHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHh
Q psy12605 420 LRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIE 499 (845)
Q Consensus 420 v~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~ 499 (845)
..++.++++.+|..|+++|++++......-.. .-.++++.++..+.+. +..++..++|++++++....+........+
T Consensus 365 ~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ 442 (852)
T 4fdd_A 365 KELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWTLSRYAHWVVSQPPDTYLKP 442 (852)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHTHHHHHHSCTTTTHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 88899999999999999999999866532211 1234567777777544 568888999999999975422223345678
Q ss_pred HHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccC--C----
Q psy12605 500 LLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSP--G---- 571 (845)
Q Consensus 500 ~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~--~---- 571 (845)
.++.+...+.+.++.++.. +| +..++......... .-.++++.|+..+...+.... ..++.+++.++. +
T Consensus 443 ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~-~l~~ll~~L~~~l~~~~~~~~--~~~~~ai~~l~~~~~~~~~ 519 (852)
T 4fdd_A 443 LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVP-YLAYILDTLVFAFSKYQHKNL--LILYDAIGTLADSVGHHLN 519 (852)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGG-GHHHHHHHHHHHHHHCCHHHH--HHHHHHHHHHHHHHGGGGC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHh-HHHHHHHHHHHHHHHhChHHH--HHHHHHHHHHHHHhhhhhc
Confidence 8899998888888888766 55 66665422211100 113566666666654322110 112223333321 0
Q ss_pred ChhhHHHHHhCCcccchH---HhhcCCChhHHHHHHHHHhhhccCC----HHHHHHHHH-------C-----------C-
Q psy12605 572 TDEQTQVILNCDALSHFP---ALLTHPKEKICKEAVWFLSNITAGN----QAQVQAVID-------A-----------G- 625 (845)
Q Consensus 572 ~~~~~~~l~~~~~l~~L~---~ll~~~~~~v~~~a~~~Lsnl~~~~----~~~~~~~~~-------~-----------~- 625 (845)
.+.... .++|.+. ..+.+.+++++ .++.+++.++..- ..+...++. . +
T Consensus 520 ~~~~~~-----~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~~~~~~~~i~~~~~~~l~~~l~~~~~~~~~~~ 593 (852)
T 4fdd_A 520 KPEYIQ-----MLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPD 593 (852)
T ss_dssp CHHHHH-----HHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred cHHHHH-----HHHHHHHHHHHhcccccHHHH-HHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 011111 1223333 12233444443 5555555554321 111111100 0 0
Q ss_pred C-----hHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhh
Q psy12605 626 L-----LPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQ 700 (845)
Q Consensus 626 ~-----l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (845)
. .......+ ..+..+.+.++.... . - +... ... .++
T Consensus 594 ~~~~~d~~~~~~~l-----------------------~~l~~l~~~l~~~~~--~-----~--~~~~------~~~-~~l 634 (852)
T 4fdd_A 594 QYEAPDKDFMIVAL-----------------------DLLSGLAEGLGGNIE--Q-----L--VARS------NIL-TLM 634 (852)
T ss_dssp TSCCCCTHHHHHHH-----------------------HHHHHHHHHHGGGGH--H-----H--HHTC------CHH-HHH
T ss_pred ccCCCcchHHHHHH-----------------------HHHHHHHHHHhHhHH--H-----H--hcCC------cHH-HHH
Confidence 0 00000000 000111111100000 0 0 0000 000 011
Q ss_pred hccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Q psy12605 701 LMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMI 780 (845)
Q Consensus 701 ~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~ 780 (845)
+..+.+.++.+|..+.++++.++... +......+. .+++.++..|...+..++..|++++..+....+..+.+|..
T Consensus 635 ~~~l~~~~~~vr~~a~~~l~~l~~~~-~~~~~~~l~-~~lp~l~~~l~~~~~~v~~~a~~alg~i~~~~~~~~~p~~~-- 710 (852)
T 4fdd_A 635 YQCMQDKMPEVRQSSFALLGDLTKAC-FQHVKPCIA-DFMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIP-- 710 (852)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHC-GGGTGGGHH-HHHHHHHHTCCTTSHHHHHHHHHHHHHHHHHHGGGGGGGTH--
T ss_pred HHHhCCCChhHHHHHHHHHHHHHHHh-hHHHHHHHH-HHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhHhHHHHHH--
Confidence 22236677899999999999998433 333333333 27788888888888899999999999998876554444432
Q ss_pred HHhChHHHHHhhhcCC--CHHHHHHHHHHHHHh
Q psy12605 781 EECGGLDKIEMLQNHE--NVEIYKLAYDIIERY 811 (845)
Q Consensus 781 ~e~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~ 811 (845)
..+..|..++.++ ...+.+.|...+-++
T Consensus 711 ---~il~~L~~~l~~~~~~~~~~~~a~~~igrl 740 (852)
T 4fdd_A 711 ---MVLHQLVEIINRPNTPKTLLENTAITIGRL 740 (852)
T ss_dssp ---HHHHHHHHHHTCSSCCHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCCCCchHHHHHHHHHHHH
Confidence 3345555555544 345666555555444
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.87 E-value=7.7e-21 Score=189.88 Aligned_cols=200 Identities=38% Similarity=0.554 Sum_probs=187.4
Q ss_pred HhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc
Q psy12605 214 IIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293 (845)
Q Consensus 214 ~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 293 (845)
..+..+.|+.++.+++++ ++..|+|+|.+++..+.+....+.+.|+++.|+.+|.
T Consensus 10 ~~~~~~~l~~LL~s~~~~-------------------------v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~ 64 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQ-------------------------ELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLS 64 (210)
T ss_dssp ---CHHHHHHHTTCSCHH-------------------------HHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTT
T ss_pred ccchhHHHHHHhcCCCHH-------------------------HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHc
Confidence 457788999999999988 9999999999999888888888999999999999999
Q ss_pred CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHH
Q psy12605 294 HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKII 373 (845)
Q Consensus 294 ~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv 373 (845)
++++.++..|+++|+|++.+++..+..+.+.|+++.|+.+|.++++.++..|+|+|+|++.+.+...+.+++.|+++.|+
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~ 144 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALV 144 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHH
Confidence 99999999999999999988888889999999999999999999999999999999999999898888899999999999
Q ss_pred HHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 374 ANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 374 ~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+++.+. ++.++..|+++|.+++.++++.+..+.+.|+++.|++++.++++.++..|+++|.+++.
T Consensus 145 ~ll~~~-----~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 145 QLLSSP-----NEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTTCS-----CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred HHHcCC-----CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence 999874 78999999999999999989999999999999999999999999999999999999975
|
| >4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A | Back alignment and structure |
|---|
Probab=99.86 E-value=2.7e-20 Score=185.91 Aligned_cols=200 Identities=34% Similarity=0.555 Sum_probs=186.9
Q ss_pred hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 281 ~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
..+..+.|+.+|.++++.++..|+++|++++.+++..+..+.+.|+++.|+.+|.++++.++..|+++|++++.+++...
T Consensus 10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~ 89 (210)
T 4db6_A 10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI 89 (210)
T ss_dssp ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHH
Confidence 55888999999999999999999999999998888888999999999999999999999999999999999998889998
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
..+++.|+++.|+.+|.+. ++.++..|+|+|++++.++++....+.+.|+++.|++++.++++.++..|+++|++
T Consensus 90 ~~i~~~g~i~~L~~lL~~~-----~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~ 164 (210)
T 4db6_A 90 QAVIDAGALPALVQLLSSP-----NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSN 164 (210)
T ss_dssp HHHHHTTCHHHHHHHTTCS-----CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHcCC-----cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 9999999999999999884 79999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 441 IIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 441 l~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
++..++..+..+.+.|+++.|+.++.+ .+.++++.++|+|.+|+.
T Consensus 165 l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~v~~~a~~aL~~l~~ 209 (210)
T 4db6_A 165 IASGGNEQKQAVKEAGALEKLEQLQSH-ENEKIQKEAQEALEKLQS 209 (210)
T ss_dssp HHTSCHHHHHHHHHTTHHHHHHHGGGC-SCHHHHHHHHHHHHHHCC
T ss_pred HHcCCcHHHHHHHHCCCHHHHHHHHhC-CCHHHHHHHHHHHHHHhc
Confidence 999989999999999999999999985 456899999999999985
|
| >1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=9e-21 Score=196.97 Aligned_cols=189 Identities=14% Similarity=0.184 Sum_probs=171.4
Q ss_pred hhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH-hhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhh
Q psy12605 103 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSF 181 (845)
Q Consensus 103 ~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~-lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~l 181 (845)
.+-+..|+..|..++. +.++...+...|++|+|+. +|+++++++++.|+|+|++++.+++..++.+++.|++++|+.+
T Consensus 54 ~e~k~~Al~~L~~lv~-~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~L 132 (296)
T 1xqr_A 54 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRL 132 (296)
T ss_dssp HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-ChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHH
Confidence 3578899999999986 4778888999999999999 9999999999999999999999999999999999999999999
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHH
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDT 261 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a 261 (845)
|.++.+..+++.|+|+|++++++.++........+++|.|+.++.+.++. ++..|
T Consensus 133 L~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~-------------------------v~~~A 187 (296)
T 1xqr_A 133 LDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK-------------------------LKVKS 187 (296)
T ss_dssp HHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH-------------------------HHHHH
T ss_pred HccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHH-------------------------HHHHH
Confidence 98655678999999999999998755444455678999999999998888 99999
Q ss_pred HHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh
Q psy12605 262 VWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ 317 (845)
Q Consensus 262 ~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 317 (845)
+|+|++++.++++.++.+++.|++++|+.+|.+++..++..|+++|++++.+.+..
T Consensus 188 ~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~ 243 (296)
T 1xqr_A 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQG 243 (296)
T ss_dssp HHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhH
Confidence 99999999888888899999999999999999999999999999999999875443
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=3.6e-20 Score=183.67 Aligned_cols=210 Identities=20% Similarity=0.153 Sum_probs=168.9
Q ss_pred CHHHHHHhhccCCCh--hHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 89 ILPVLVECLERSDRP--NLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~--~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.+|.||++|. ++++ +++..|+++|.+++.++++++..+++.|+||+|+++|+++++++++.|+|+|+||+.++++++
T Consensus 9 ~i~~lV~lL~-s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk 87 (233)
T 3tt9_A 9 TLERAVSMLE-ADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNK 87 (233)
T ss_dssp CHHHHHHTCC-SSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHhC-CCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHH
Confidence 5899999995 5566 889999999999998889999999999999999999999999999999999999998889999
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc---CCchhhHHHHHHHhhh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH---HDTSVSIYLWLSIIEK 243 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~---~~~~~~~~~~~~l~~~ 243 (845)
..+.+.|+||+|+++|.+..+.++++.|+.+|+||+....... ....+++|.|+.++.. ...+. .+..
T Consensus 88 ~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~--~i~~~~i~~Lv~ll~~p~sG~~~~-------~~~~ 158 (233)
T 3tt9_A 88 LEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKN--LMITEALLTLTENIIIPFSGWPEG-------DYPK 158 (233)
T ss_dssp HHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHH--HHHHHHHHHHCCCCCHHHHCCCGG-------GCCC
T ss_pred HHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHH--HHHhccHHHHHHHHhccccCCccc-------cccc
Confidence 9999999999999999854467899999999999997664333 2345689999987631 10000 0000
Q ss_pred ChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhhccC------CchhhHHHHHHHHHHHhcC
Q psy12605 244 NPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPLLSH------KEVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 244 ~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~------~~~~v~~~al~~L~nl~~~ 313 (845)
+ .-..+.+++..|.++|.+|+..+.+.++.+.+. |+++.|+.+++. .+.+.++.++.+|.||+..
T Consensus 159 -~----~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~ 230 (233)
T 3tt9_A 159 -A----NGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ 230 (233)
T ss_dssp -C----CTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred -c----cccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence 0 000011289999999999998877778888776 778999999954 3567999999999999864
|
| >1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A | Back alignment and structure |
|---|
Probab=99.82 E-value=2e-18 Score=201.13 Aligned_cols=524 Identities=13% Similarity=0.091 Sum_probs=359.2
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHH
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPL 135 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~ 135 (845)
++++.++..++..|..+...-... -....+++.|..++ .++++.+|..|+.+|.+++...+.. .+....+|.
T Consensus 59 d~~~~vr~~~~~~L~~~~~~~~~~----~~~~~ll~~L~~l~-~~~~~~vR~~a~~~L~~l~~~~~~~---~~~~~l~~~ 130 (588)
T 1b3u_A 59 YDEDEVLLALAEQLGTFTTLVGGP----EYVHCLLPPLESLA-TVEETVVRDKAVESLRAISHEHSPS---DLEAHFVPL 130 (588)
T ss_dssp CCCHHHHHHHHHHHTTCSGGGTSG----GGGGGGHHHHHHHT-TSSCHHHHHHHHHHHHHHHTTSCHH---HHHHTHHHH
T ss_pred CCcHHHHHHHHHHHHHHHhccCcH----HHHHHHHHHHHHHH-hCchHHHHHHHHHHHHHHHHHCCHH---HHHHHHHHH
Confidence 667888888888887665431111 01234678888877 4678899999999999999754332 223346778
Q ss_pred HHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHh
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTII 215 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~ 215 (845)
+..+..+++...|..|+.+++.++...+.. . ....++.+..++.++ +..+|..++.+|..++..... .....
T Consensus 131 l~~l~~~~~~~~R~~a~~~l~~~~~~~~~~---~-~~~l~~~l~~l~~d~-~~~VR~~a~~~l~~l~~~~~~---~~~~~ 202 (588)
T 1b3u_A 131 VKRLAGGDWFTSRTSACGLFSVCYPRVSSA---V-KAELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLEL---DNVKS 202 (588)
T ss_dssp HHHHHTCSSHHHHHHHGGGHHHHTTTSCHH---H-HHHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCH---HHHHH
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhcH---HhHHH
Confidence 888888888999999999999998654321 1 122467777777665 568999999999999976521 12346
Q ss_pred hHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCC
Q psy12605 216 ELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHK 295 (845)
Q Consensus 216 ~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~ 295 (845)
..+|.+..++.++++. ++..|+.+|..++...+.. .....+++.+..++.++
T Consensus 203 ~l~~~l~~~~~d~~~~-------------------------vr~~a~~~l~~l~~~~~~~---~~~~~~~~~l~~~~~d~ 254 (588)
T 1b3u_A 203 EIIPMFSNLASDEQDS-------------------------VRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDK 254 (588)
T ss_dssp THHHHHHHHHTCSCHH-------------------------HHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCS
T ss_pred HHHHHHHHHhcCCcHH-------------------------HHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHccCC
Confidence 7889999988888777 8888888888877543221 12345678888888899
Q ss_pred chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH-HHHHHhcCChHHHHH
Q psy12605 296 EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ-VQAVIDAGLLPKIIA 374 (845)
Q Consensus 296 ~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~-~~~l~~~~~i~~Lv~ 374 (845)
+..+|..|+.+|+.++...+. ......+++.+..++.+.++.+|..|+++|..++...... ........++|.+..
T Consensus 255 ~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~ 331 (588)
T 1b3u_A 255 SWRVRYMVADKFTELQKAVGP---EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKE 331 (588)
T ss_dssp SHHHHHHHHHTHHHHHHHHCH---HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhCc---ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHH
Confidence 999999999999999753211 1122357889999999999999999999999987653321 111223456788888
Q ss_pred HhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 375 NLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVIN 454 (845)
Q Consensus 375 lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~ 454 (845)
++.+ .++.+|..+++++..++..-.. .......++.+..++.+++++||..++.+++.+....... ...
T Consensus 332 ~l~d-----~~~~vR~~a~~~l~~l~~~~~~---~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~---~~~ 400 (588)
T 1b3u_A 332 LVSD-----ANQHVKSALASVIMGLSPILGK---DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR---QLS 400 (588)
T ss_dssp HHTC-----SCHHHHHHHHTTGGGGHHHHCH---HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH---HHH
T ss_pred HhcC-----CCHHHHHHHHHHHHHHHHHhhH---hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHH---HHH
Confidence 8876 4789999999999998752211 1122347889999999999999999999999887532110 011
Q ss_pred CCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH--HHhhhcCchhhH
Q psy12605 455 MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW--LSIIEKNPQISK 532 (845)
Q Consensus 455 ~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~--l~~l~~~~~~~~ 532 (845)
...++.+..++.+ .+..++..++.++..++....+. .....+++.+..++.+.+..|+..+. +..+...
T Consensus 401 ~~~lp~l~~~~~d-~~~~vr~~~~~~l~~l~~~~~~~---~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~----- 471 (588)
T 1b3u_A 401 QSLLPAIVELAED-AKWRVRLAIIEYMPLLAGQLGVE---FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEK----- 471 (588)
T ss_dssp HHHHHHHHHHHTC-SSHHHHHHHHHHHHHHHHHHCGG---GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-----
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHcCHH---HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH-----
Confidence 2345667766654 45678888888998887643211 11134678888888888777765532 2222110
Q ss_pred HHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhcc
Q psy12605 533 ILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 612 (845)
Q Consensus 533 ~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~ 612 (845)
+ +.+ .....++|.+..++.+++..+|..++++++.++.
T Consensus 472 ---------------~----------------------~~~-----~~~~~llp~l~~~~~~~~~~~R~~a~~~l~~l~~ 509 (588)
T 1b3u_A 472 ---------------F----------------------GKE-----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSE 509 (588)
T ss_dssp ---------------H----------------------CHH-----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHH
T ss_pred ---------------h----------------------Cch-----hHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 0 000 0012345666667778889999999999999874
Q ss_pred CCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcch
Q psy12605 613 GNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTL 692 (845)
Q Consensus 613 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (845)
.... ......++|.+.+.+
T Consensus 510 ~~~~---~~~~~~~~~~l~~~l---------------------------------------------------------- 528 (588)
T 1b3u_A 510 VCGQ---DITTKHMLPTVLRMA---------------------------------------------------------- 528 (588)
T ss_dssp HHHH---HHHHHHTHHHHHHGG----------------------------------------------------------
T ss_pred hcCH---HHHHHHHHHHHHhhC----------------------------------------------------------
Confidence 3211 111223555555444
Q ss_pred hhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHH
Q psy12605 693 FAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNM 765 (845)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l 765 (845)
.+.++++|..++++++.++.....+. ....+++.|..++.+.|.+++..|..+|..+
T Consensus 529 ------------~d~~~~Vr~~a~~~l~~l~~~~~~~~----~~~~~~p~l~~l~~d~d~~vr~~a~~al~~l 585 (588)
T 1b3u_A 529 ------------GDPVANVRFNVAKSLQKIGPILDNST----LQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp ------------GCSCHHHHHHHHHHHHHHGGGSCHHH----HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred ------------CCCCchHHHHHHHHHHHHHHHhchhh----hHHHHHHHHHHHcCCCchhHHHHHHHHHHHh
Confidence 56778999999999999985433322 2235666677778889999999999998765
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.82 E-value=8.4e-18 Score=205.35 Aligned_cols=635 Identities=13% Similarity=0.139 Sum_probs=390.6
Q ss_pred cHHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChh
Q psy12605 45 NLDMLVVEAA-RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSA 122 (845)
Q Consensus 45 ~i~~lv~~~l-~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~ 122 (845)
.+.+++ ... .++|+..+.+|...|.++...+ ..|.++.|++++..+ .++.+|..|+..|.+.....-.
T Consensus 5 ~l~~~L-~~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~l~~il~~~~~~~~vR~~A~~~lk~~i~~~w~ 74 (861)
T 2bpt_A 5 EFAQLL-ENSILSPDQNIRLTSETQLKKLSNDN---------FLQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDS 74 (861)
T ss_dssp HHHHHH-HHHHHCSSHHHHHHHHHHHHHHHHHC---------HHHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSH
T ss_pred HHHHHH-HHcccCcCHHHHHHHHHHHHHHHhhC---------HHHHHHHHHHHHhCCCCChHHHHHHHHHHHhhccCcCh
Confidence 456777 677 8899999999999998864321 023577888988543 4678999999999997543210
Q ss_pred hH--------HH-H---HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHH
Q psy12605 123 QT--------QE-V---VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPIS 189 (845)
Q Consensus 123 ~~--------~~-i---~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~ 189 (845)
.. .. + .....-+.|++.|.++++.++..++.+|+.++... +... -...++.|+..+.++.+..
T Consensus 75 ~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~vr~~~~~~l~~i~~~~~p~~~----w~~ll~~L~~~l~~~~~~~ 150 (861)
T 2bpt_A 75 VKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPEN 150 (861)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHH
T ss_pred HHHHHHHHhHhhhCCHHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHHHHhhCcccc----cHHHHHHHHHHHhcCCCHH
Confidence 00 00 0 11234467888899999999999999999987532 1000 0124677778887653557
Q ss_pred HHHHHHHHHHHhhcCCCCCC--ChhHHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHH
Q psy12605 190 FLRNVTWVIVNLCRNKDPPP--SMSTIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWAL 265 (845)
Q Consensus 190 ~~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L 265 (845)
++..++.++..+++...+.. .......+++.+...+.++ ++. ++..++.++
T Consensus 151 ~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~-------------------------vr~~al~~l 205 (861)
T 2bpt_A 151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKA-------------------------VRLAALNAL 205 (861)
T ss_dssp HHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHH-------------------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCChhhhHHHHHHHHHHHHHHHhhcCCCCCHH-------------------------HHHHHHHHH
Confidence 89999999999998653321 1234566778888888776 555 777788887
Q ss_pred HHhhcCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHH
Q psy12605 266 SYLTDGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKE 344 (845)
Q Consensus 266 ~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~ 344 (845)
..+...-..... ......+++.+...+.++++.++..++.+|..++...+..........+++.+...+.+.++.++..
T Consensus 206 ~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~ 285 (861)
T 2bpt_A 206 ADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASM 285 (861)
T ss_dssp HHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 765432211100 0001224566677778889999999999999998653332111122145666777778889999999
Q ss_pred HHHHHHHhhcCChH-----------------HHHHHHhcCChHHHHHHhhhccc--ccCChhHHHHHHHHHHHHhcCChH
Q psy12605 345 AVWFLSNITAGNQA-----------------QVQAVIDAGLLPKIIANLQKVGR--IVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 345 a~~~L~nl~~~~~~-----------------~~~~l~~~~~i~~Lv~lL~~~~~--~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
|+.++..++..... .....+ ..++|.++..+..... .++++.++..+..++..++...++
T Consensus 286 a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~ 364 (861)
T 2bpt_A 286 TVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN 364 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHccH
Confidence 99999888654211 111111 4467788888765321 113467899999999998863221
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-Q-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
.. . ...++.+...+.+.+..+|..|+++++.++.... . ....+ . .+++.++..+.+. +..++..++|+++.
T Consensus 365 ~~---~-~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~-~il~~l~~~l~d~-~~~vr~~a~~~l~~ 437 (861)
T 2bpt_A 365 HI---L-EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-H-QALPSILNLMNDQ-SLQVKETTAWCIGR 437 (861)
T ss_dssp GG---H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-H-HHHHHHHHGGGCS-CHHHHHHHHHHHHH
T ss_pred hH---H-HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-H-HHHHHHHHHcCCC-cHHHHHHHHHHHHH
Confidence 11 1 1245677788889999999999999999997542 2 22222 2 3567777777654 55788899999999
Q ss_pred hhcCCCCC-CChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCc-----hhhHHHHhhhhhhHHHHhhhccCCCCc
Q psy12605 484 LCRNKDPP-PSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNP-----QISKILVSKMKVCSRYLYYLSHNSGPM 555 (845)
Q Consensus 484 L~~~~~~~-~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~-----~~~~~~~~~~~~~~~L~~ll~~~~~~~ 555 (845)
++....+. .........++.+...+.+. +.+... || +..+...- ...... -..+++.++..+.+.+.+.
T Consensus 438 l~~~~~~~~~~~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~--~~~il~~L~~~l~~~d~~~ 514 (861)
T 2bpt_A 438 IADSVAESIDPQQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNF--YPALVDGLIGAANRIDNEF 514 (861)
T ss_dssp HHHHHGGGSCTTTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGG--HHHHHHHHHHHHTCSCCGG
T ss_pred HHHHhhhhcCCHHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHH--HHHHHHHHHHHHhCcCcch
Confidence 98754221 12345677888888888765 667655 56 55554321 111011 1256777888887655444
Q ss_pred ccccccccccccccCCChhhHHHHHhCCcccchHHhhcC---------------CChhHHHHHHHHHhhhccCCHHHHHH
Q psy12605 556 SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH---------------PKEKICKEAVWFLSNITAGNQAQVQA 620 (845)
Q Consensus 556 ~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~---------------~~~~v~~~a~~~Lsnl~~~~~~~~~~ 620 (845)
.++..++.+++.++............ .+++.+...+.. ....++..++.+|++++......+..
T Consensus 515 ~vr~~a~~al~~l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~ 593 (861)
T 2bpt_A 515 NARASAFSALTTMVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP 593 (861)
T ss_dssp GHHHHHHHHHHHHHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG
T ss_pred HHHHHHHHHHHHHHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 44555666776664432221111111 233444444431 13467788888888887543321111
Q ss_pred HHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhh
Q psy12605 621 VIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQ 700 (845)
Q Consensus 621 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (845)
+.+ .+++.+++.+
T Consensus 594 ~~~-~l~~~l~~~l------------------------------------------------------------------ 606 (861)
T 2bpt_A 594 VAD-MLMGLFFRLL------------------------------------------------------------------ 606 (861)
T ss_dssp GHH-HHHHHHHHHH------------------------------------------------------------------
T ss_pred HHH-HHHHHHHHHH------------------------------------------------------------------
Confidence 111 1222222222
Q ss_pred hccCCCCCc-cchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy12605 701 LMFFPQGEF-QTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANM 779 (845)
Q Consensus 701 ~~~~~~~~~-~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~ 779 (845)
...++ .++..+..+++.++.... +.....+. .+++.+...|...+++++..++.++..+.+..+..+.+|...
T Consensus 607 ----~~~~~~~v~~~~~~~l~~l~~~~~-~~~~~~l~-~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~ 680 (861)
T 2bpt_A 607 ----EKKDSAFIEDDVFYAISALAASLG-KGFEKYLE-TFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDA 680 (861)
T ss_dssp ----HSTTGGGTHHHHHHHHHHHHHHHG-GGGHHHHH-HHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHH
T ss_pred ----ccCCCCcHHHHHHHHHHHHHHHHh-hhHHHHHH-HHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHH
Confidence 22333 789999999998873222 12222222 377888888887888999999999999998766554444332
Q ss_pred HHHhChHHHHHhhhcCCC--HHHHHHHHHHH
Q psy12605 780 IEECGGLDKIEMLQNHEN--VEIYKLAYDII 808 (845)
Q Consensus 780 ~~e~g~~~~L~~l~~~~~--~~v~~~a~~~l 808 (845)
+ ++.+...+.+++ .+++..|...+
T Consensus 681 l-----~~~l~~~l~~~~~~~~vr~~~~~~l 706 (861)
T 2bpt_A 681 M-----MNVLAQMISNPNARRELKPAVLSVF 706 (861)
T ss_dssp H-----HHHHHHHHHCTTCCTTHHHHHHHHH
T ss_pred H-----HHHHHHHhCCccccHhhhHHHHHHH
Confidence 2 233333333332 45665554444
|
| >3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1.3e-18 Score=172.56 Aligned_cols=199 Identities=12% Similarity=0.146 Sum_probs=174.1
Q ss_pred chhhHHhhccCCch--hhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHH
Q psy12605 284 VVPSLIPLLSHKEV--KVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQ 361 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~--~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~ 361 (845)
.++.++.+|.++++ .++..|+.+|.+++.+++..+..+.+.|++|.|+++|.+++++++..|+|+|.|++.++++.+.
T Consensus 9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~ 88 (233)
T 3tt9_A 9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL 88 (233)
T ss_dssp CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence 57899999998887 8999999999999998888899999999999999999999999999999999999988899999
Q ss_pred HHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC----------------C
Q psy12605 362 AVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM----------------S 425 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~----------------~ 425 (845)
.+.+.|++|.|+++|.+. .+.+++..|+.+|++++..+ +.+..+.+ ++++.|++++. .
T Consensus 89 ~I~~~GaI~~Lv~lL~~~----~~~~~~e~a~~aL~nLS~~~-~~k~~i~~-~~i~~Lv~ll~~p~sG~~~~~~~~~~~~ 162 (233)
T 3tt9_A 89 EVAELNGVPRLLQVLKQT----RDLETKKQITGLLWNLSSND-KLKNLMIT-EALLTLTENIIIPFSGWPEGDYPKANGL 162 (233)
T ss_dssp HHHHTTHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHTSG-GGHHHHHH-HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred HHHHcCCHHHHHHHHccC----CCHHHHHHHHHHHHHHHcCh-hhHHHHHh-ccHHHHHHHHhccccCCccccccccccc
Confidence 999999999999999864 37899999999999998754 45566665 46999988763 1
Q ss_pred CCHHHHHHHHHHHHHhhcCChHHHHHHHhC-CChHHHHhccCC-----CCChhHHHHHHHHHHHhhcCC
Q psy12605 426 PHSNVCEQAVWALGNIIGDGPQLRDYVINM-GVVPPLLSFIKP-----DIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 426 ~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-g~l~~L~~ll~~-----~~~~~~~~~~~~~l~nL~~~~ 488 (845)
.+++++..|.++|.|++..+++.|+.+.++ |+++.|+.+++. ..+.+.+++++.+|.||+..-
T Consensus 163 ~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~~ 231 (233)
T 3tt9_A 163 LDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQL 231 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCCC
T ss_pred chHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhhh
Confidence 366899999999999999989999999987 567999999873 234578999999999999754
|
| >2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-17 Score=198.56 Aligned_cols=611 Identities=14% Similarity=0.106 Sum_probs=367.2
Q ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCCcc-------HHH-H---HhcCCHHHHHHhhccCCChhHHHHHHHHH
Q psy12605 47 DMLVVEAARK--DNPELQLLAVQSARKLLSSDKNPP-------IEA-L---IHSGILPVLVECLERSDRPNLQFEAAWAL 113 (845)
Q Consensus 47 ~~lv~~~l~~--~~~~~~~~a~~~l~~ll~~~~~~~-------~~~-i---~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L 113 (845)
..++ ..+.+ .++.++..|+..|++.+....... +.. + ....+-+.|++.|. ++++.+|..++.+|
T Consensus 42 ~~l~-~il~~~~~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~vr~~~~~~l 119 (861)
T 2bpt_A 42 GLSS-QVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV-SIEPRIANAAAQLI 119 (861)
T ss_dssp HHHH-HHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT-CSSHHHHHHHHHHH
T ss_pred HHHH-HHHhCCCCChHHHHHHHHHHHhhccCcChHHHHHHHHhHhhhCCHHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 3445 55654 368899999999998764321000 010 0 12234567888884 56789999999999
Q ss_pred HHHhcCC-hhhHHHHHHcCChHHHHHhhCCC-ChhHHHHHHHHHHHhcCCCh-hhH--HHHHhcCChhhHHhhhcCCC-C
Q psy12605 114 TNIASGT-SAQTQEVVAAGAVPLFLRLLMSP-HSNVCEQAVWALGNIIGDGP-QLR--DYVINMGVVPPLLSFIKPDI-P 187 (845)
Q Consensus 114 ~~la~~~-~~~~~~i~~~g~i~~L~~lL~s~-~~~v~~~a~~~L~nla~~~~-~~r--~~i~~~g~i~~Lv~ll~~~~-~ 187 (845)
..++... +... -.+.+|.|++.+.++ ++.+++.++.+|+.++.... +.+ .. .....++.+...+.++. +
T Consensus 120 ~~i~~~~~p~~~----w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~~~ll~~l~~~l~~~~~~ 194 (861)
T 2bpt_A 120 AAIADIELPHGA----WPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVS-SSNNILIAIVQGAQSTETS 194 (861)
T ss_dssp HHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGG-GHHHHHHHHHHHHSTTCCC
T ss_pred HHHHHhhCcccc----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHH-HHHHHHHHHHHhhcCCCCC
Confidence 9998642 1100 023678888999988 99999999999999986421 110 00 01123556666666652 5
Q ss_pred HHHHHHHHHHHHHhhcCCCC-CCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH
Q psy12605 188 ISFLRNVTWVIVNLCRNKDP-PPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS 266 (845)
Q Consensus 188 ~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~ 266 (845)
..++..++.++.++...-.. ..........++.+...+.+.+++ ++..++.+|.
T Consensus 195 ~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~-------------------------~r~~a~~~l~ 249 (861)
T 2bpt_A 195 KAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE-------------------------VQAAAFGCLC 249 (861)
T ss_dssp HHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH-------------------------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccChhHHHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHH
Confidence 68999999999987542210 001111234677777777777776 8888888888
Q ss_pred HhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh-----------------hHHHHhcCCccch
Q psy12605 267 YLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE-----------------QTQVILNCDALSH 329 (845)
Q Consensus 267 ~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~-----------------~~~~i~~~~~l~~ 329 (845)
.+....++.........+++.+...+.+.++.++..|+.++..++..... ...... ..+++.
T Consensus 250 ~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ 328 (861)
T 2bpt_A 250 KIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPN 328 (861)
T ss_dssp HHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHH
Confidence 87765444333333336677777888888999999999999998754211 001111 246677
Q ss_pred hhHhhcCC-------chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 330 FPALLTHP-------KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 330 L~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
++..+... +..+|..+..+|..++....+. ++ ..+++.+.+.+.+ .++.+|..|+++++.++.+
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~---~~-~~l~~~l~~~l~~-----~~~~~r~~a~~~l~~i~~~ 399 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNH---IL-EPVLEFVEQNITA-----DNWRNREAAVMAFGSIMDG 399 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhcccccccccCcHHHHHHHHHHHHHHHccHh---HH-HHHHHHHHHHcCC-----CChhHHHHHHHHHHHHHcC
Confidence 77777542 2468889999998885432211 00 1233444444444 4789999999999999987
Q ss_pred Ch-HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH-HHHHhCCChHHHHhccCCCCChhHHHHHHHH
Q psy12605 403 TS-AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR-DYVINMGVVPPLLSFIKPDIPISFLRNVTWV 480 (845)
Q Consensus 403 ~~-~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~-~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~ 480 (845)
.. +....... ..++.++..+.++++.+|..++|+|++++......- ..-.-..+++.++..+.+. ..++..++|+
T Consensus 400 ~~~~~~~~~l~-~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~~--~~v~~~a~~a 476 (861)
T 2bpt_A 400 PDKVQRTYYVH-QALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDH--PKVATNCSWT 476 (861)
T ss_dssp SCHHHHHHHHH-HHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTSC--HHHHHHHHHH
T ss_pred CCHHHHHHHHH-HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhccC--hHHHHHHHHH
Confidence 53 33333332 468889999999999999999999999985311000 0000112456777777653 6788899999
Q ss_pred HHHhhcCCCC---CCChhHHHhHHHHHHHhhcCCC--hhHHHHHH--HHhhhc-CchhhHHHHhhhhhhHHHHhhhccCC
Q psy12605 481 IVNLCRNKDP---PPSMSTIIELLPALNILIHHHD--TSVSIYLW--LSIIEK-NPQISKILVSKMKVCSRYLYYLSHNS 552 (845)
Q Consensus 481 l~nL~~~~~~---~~~~~~~~~~l~~l~~ll~~~d--~~v~~~~~--l~~l~~-~~~~~~~~~~~~~~~~~L~~ll~~~~ 552 (845)
+.+++..... ..-...+..+++.+..++.+.| +.++..+. +..+.. .+......+ ..+++.++..+...-
T Consensus 477 l~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~--~~l~~~l~~~l~~~~ 554 (861)
T 2bpt_A 477 IINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETS--ASISTFVMDKLGQTM 554 (861)
T ss_dssp HHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHH--HHHHHHHHHHHHHHT
T ss_pred HHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHH--HHHHHHHHHHHHHHH
Confidence 9999886431 1122456678888888887544 55665433 444432 121111111 134444555443210
Q ss_pred -------------CCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCCh-hHHHHHHHHHhhhccCCHHHH
Q psy12605 553 -------------GPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKE-KICKEAVWFLSNITAGNQAQV 618 (845)
Q Consensus 553 -------------~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~-~v~~~a~~~Lsnl~~~~~~~~ 618 (845)
.....+..++.+++++...-...... .-..+++.+..++++.++ .++..++++++.++.......
T Consensus 555 ~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~ 633 (861)
T 2bpt_A 555 SVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGF 633 (861)
T ss_dssp TSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGG
T ss_pred hhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhH
Confidence 00011122333333332211110000 011345566667777766 899999999998874322222
Q ss_pred HHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhh
Q psy12605 619 QAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISR 698 (845)
Q Consensus 619 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 698 (845)
..++. .++|.+.+.+
T Consensus 634 ~~~l~-~i~~~l~~~l---------------------------------------------------------------- 648 (861)
T 2bpt_A 634 EKYLE-TFSPYLLKAL---------------------------------------------------------------- 648 (861)
T ss_dssp HHHHH-HHHHHHHHHH----------------------------------------------------------------
T ss_pred HHHHH-HHHHHHHHHh----------------------------------------------------------------
Confidence 22211 1333333333
Q ss_pred hhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhcccc--HHHHHHHHHHHHHHHHhhHHHHHHH
Q psy12605 699 FQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKD--AQVIQVVLDGINNMLKMADAQVETL 776 (845)
Q Consensus 699 ~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d--~~~~~~al~~L~~l~~~~~~~~~~~ 776 (845)
.+.+++++..++.+++.++.... +.....+ ..+++.++..+.+.+ ..++..++.++..++...+..+.+|
T Consensus 649 ------~~~~~~vr~~a~~~l~~l~~~~~-~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~ 720 (861)
T 2bpt_A 649 ------NQVDSPVSITAVGFIADISNSLE-EDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPY 720 (861)
T ss_dssp ------HCTTSHHHHHHHHHHHHHHHHTG-GGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred ------ccccHHHHHHHHHHHHHHHHHhc-hhccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 34567799999999998874322 2222222 256777778887754 8899999999999998766665554
Q ss_pred HH
Q psy12605 777 AN 778 (845)
Q Consensus 777 ~~ 778 (845)
..
T Consensus 721 l~ 722 (861)
T 2bpt_A 721 LN 722 (861)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=193.53 Aligned_cols=367 Identities=17% Similarity=0.199 Sum_probs=262.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.++- +.|.+++...+..++..+..+...+.+. ..+.+.+++++ .+++..+|+.+...+..++..+++...
T Consensus 15 ~~~i~-~~L~~~~~~~k~~~~~kli~~~~~G~d~-------~~~~~~vi~l~-~s~~~~~Krl~yl~l~~~~~~~~e~~~ 85 (591)
T 2vgl_B 15 IFELK-AELNNEKKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCM-QTDNLELKKLVYLYLMNYAKSQPDMAI 85 (591)
T ss_dssp HHHHH-HHTTSSCHHHHHHHHHHHHHHHHTTCCC-------GGGHHHHHHTT-SSSCHHHHHHHHHHHHHHHHHSHHHHH
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHHHCCCCh-------HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHcccCchHHH
Confidence 44555 7889999998888888888776666432 23577788888 577889999998899888765444432
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
-+++.+.+-|+++++.+|..|+++|+++. .++..+.+ ++.+..++.++ +..+|..|++++.++++..
T Consensus 86 -----l~~n~l~kdL~~~n~~ir~~AL~~L~~i~--~~~~~~~l-----~~~l~~~L~d~-~~~VRk~A~~al~~i~~~~ 152 (591)
T 2vgl_B 86 -----MAVNSFVKDCEDPNPLIRALAVRTMGCIR--VDKITEYL-----CEPLRKCLKDE-DPYVRKTAAVCVAKLHDIN 152 (591)
T ss_dssp -----TTHHHHGGGSSSSSHHHHHHHHHHHHTCC--SGGGHHHH-----HHHHHHHSSCS-CHHHHHHHHHHHHHHHHSS
T ss_pred -----HHHHHHHHHcCCCCHHHHHHHHHHHHcCC--hHHHHHHH-----HHHHHHHcCCC-ChHHHHHHHHHHHHHHhhC
Confidence 26788889999999999999999999996 34444443 56788888766 5689999999999999854
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
+ ......+.++.+..++.++++. ++..|+++|..+...+++....-...+.+
T Consensus 153 p---~~~~~~~~~~~l~~lL~d~d~~-------------------------V~~~A~~aL~~i~~~~~~~~~~~l~~~~~ 204 (591)
T 2vgl_B 153 A---QMVEDQGFLDSLRDLIADSNPM-------------------------VVANAVAALSEISESHPNSNLLDLNPQNI 204 (591)
T ss_dssp C---CCHHHHHHHHHHHHTTSCSCHH-------------------------HHHHHHHHHHHHTTSCCSCCSCCCHHHHH
T ss_pred h---hhcccccHHHHHHHHhCCCChh-------------------------HHHHHHHHHHHHHhhCCCccchhccHHHH
Confidence 2 2233357899999999988888 99999999999987654320000112345
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC---ChHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG---NQAQVQA 362 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~---~~~~~~~ 362 (845)
..|+..+.+.++..+...+++++.++..++.... .+++.+..++.+.++.++.+|++++..+... +++..+.
T Consensus 205 ~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~-----~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~~~ 279 (591)
T 2vgl_B 205 NKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ-----SICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYYNM 279 (591)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH-----HHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSHHH
T ss_pred HHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH-----HHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHHHH
Confidence 6677777778888999999999988755443322 3567788888999999999999999998642 2333333
Q ss_pred HHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 363 VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
+ -..+.+.|+.++. .++++|..|+.++..++...++.... .+..+.... +++..|+..+++.|.+++
T Consensus 280 ~-~~~~~~~L~~L~~------~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~~~~~-~d~~~Ir~~al~~L~~l~ 346 (591)
T 2vgl_B 280 L-LKKLAPPLVTLLS------GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVFFVKY-NDPIYVKLEKLDIMIRLA 346 (591)
T ss_dssp H-HHHTHHHHHHHTT------SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTTSCCT-TSCHHHHHHHHHHHHHTC
T ss_pred H-HHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhheecc-CChHHHHHHHHHHHHHHC
Confidence 2 2345677776653 27899999999999998754432111 122222222 344889999999999988
Q ss_pred cCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 443 GDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 443 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
.... .. .+++.|..++.+ .+.++++.+++++++++...
T Consensus 347 ~~~n-v~------~iv~~L~~~l~~-~d~~~r~~~v~aI~~la~~~ 384 (591)
T 2vgl_B 347 SQAN-IA------QVLAELKEYATE-VDVDFVRKAVRAIGRCAIKV 384 (591)
T ss_dssp CSST-HH------HHHHHHHHHTTS-SCHHHHHHHHHHHHHHHTTC
T ss_pred Chhh-HH------HHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHhC
Confidence 5442 21 134556666654 35578888889999888654
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.79 E-value=6.2e-16 Score=170.87 Aligned_cols=450 Identities=14% Similarity=0.137 Sum_probs=323.4
Q ss_pred hhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCC
Q psy12605 42 AQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGT 120 (845)
Q Consensus 42 ~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~ 120 (845)
....++.++-+.-++.-.+.+..|+..|+.+... ...-+.++++|.|+..|+.+ ++.++-..++.+|.++-..+
T Consensus 19 ~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~-----y~~~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~ 93 (651)
T 3grl_A 19 EAETIQKLCDRVASSTLLDDRRNAVRALKSLSKK-----YRLEVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISND 93 (651)
T ss_dssp HHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTT-----TTTHHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC
T ss_pred hhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHH-----hHHHhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCC
Confidence 3466888883344567889999999999987432 23455677899999999655 56788888999998876544
Q ss_pred hh-----------------hHHHHH-HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhc-CChhhHHh
Q psy12605 121 SA-----------------QTQEVV-AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINM-GVVPPLLS 180 (845)
Q Consensus 121 ~~-----------------~~~~i~-~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~-g~i~~Lv~ 180 (845)
.+ +.+.+. +.+.|+.|+.+|++++..+|..++.+|..|+...+. .++.+... ++++.|+.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~ 173 (651)
T 3grl_A 94 EEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMD 173 (651)
T ss_dssp --------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHG
T ss_pred CcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHH
Confidence 32 223333 478999999999999999999999999999988877 88888855 89999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHH
Q psy12605 181 FIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVD 260 (845)
Q Consensus 181 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 260 (845)
+|..+ .+.+|..++..|.++++++...++....+|+++.|+.++..+..- ..-.+..+
T Consensus 174 lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~---------------------~Ggivv~D 231 (651)
T 3grl_A 174 LLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNS---------------------DGGIVVED 231 (651)
T ss_dssp GGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGG---------------------GSHHHHHH
T ss_pred HHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCC---------------------ccchhHHH
Confidence 99877 568899999999999999988888889999999999999865431 00018899
Q ss_pred HHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchh------h---HHHHHHHHHHHhcCC------hhhHHHHhcCC
Q psy12605 261 TVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVK------V---QTASLRAVGNIVTGT------DEQTQVILNCD 325 (845)
Q Consensus 261 a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~------v---~~~al~~L~nl~~~~------~~~~~~i~~~~ 325 (845)
|+..+.+|.+++..+...+.+.|.++.|..+|..+++. . ...++.+++-++..+ ...+..+.++|
T Consensus 232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g 311 (651)
T 3grl_A 232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence 99999999999988889999999999999999644321 2 224777888887653 24677888999
Q ss_pred ccchhhHhhcCC--chhhHHHHHHHHHHhhcCChHHHHHHHhcC-----ChHHHHHHhhhcccccCChhHHHHHHHHHHH
Q psy12605 326 ALSHFPALLTHP--KEKICKEAVWFLSNITAGNQAQVQAVIDAG-----LLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398 (845)
Q Consensus 326 ~l~~L~~lL~~~--~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~-----~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~ 398 (845)
+++.|++++.+. ...++..|+.+++.+..+++.....+.+.. -.|.++.++.+-.......++|.+|+.++..
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~~~~~~lR~Aa~~cl~a 391 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQC 391 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 999999999764 578999999999999999999888876543 2344554432211111568999999999999
Q ss_pred HhcCChHhHHHHHHc------C----Ch---HHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc
Q psy12605 399 IASGTSAQTQEVVAA------G----AV---PLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI 465 (845)
Q Consensus 399 l~~~~~~~~~~l~~~------g----~i---~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll 465 (845)
...++++.+..++.. + .+ ..+..-+-+.++--.--|+.+|..+..++++.+..+.+--.- .
T Consensus 392 y~~~N~~~Q~~i~~~llp~~~~~~~~~~s~g~ll~~~l~s~d~~~~wfAavil~hll~~n~~~K~~~l~v~l~------~ 465 (651)
T 3grl_A 392 FLYKNQKGQGEIVSTLLPSTIDATGNTVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLA------T 465 (651)
T ss_dssp HHTTCHHHHHHHHHTTSSCCCCCTTSSSCHHHHHHHHHTSSCHHHHHHHHHHHHHHHTTCHHHHHHHTTCBCC------C
T ss_pred HHhCCHHHHHHHHHhcCCcccccCCCCCCcchhhhhhhccCchHHHHHHHHHHHHHHcCCHHHHHHHHhCccc------c
Confidence 999988777666654 0 11 124445555555333446777888888888877665442100 0
Q ss_pred C-CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhh-cCCChhHHHH-H-H-HHhhhcCchhhHHHHhhhhh
Q psy12605 466 K-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI-HHHDTSVSIY-L-W-LSIIEKNPQISKILVSKMKV 540 (845)
Q Consensus 466 ~-~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll-~~~d~~v~~~-~-~-l~~l~~~~~~~~~~~~~~~~ 540 (845)
. ...+.. .++.+...+ ...|+.+... + + ...|.++|..-..+..+...
T Consensus 466 ~~ge~~vt---------------------------liq~~~~~L~~~~~~ri~vgyL~LL~~WL~e~p~AV~dFL~~~s~ 518 (651)
T 3grl_A 466 SIGNPPVS---------------------------LLQQCTNILSQGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSAN 518 (651)
T ss_dssp CTTCCCCB---------------------------HHHHHHHHTTTTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTH
T ss_pred cCCCCccc---------------------------HHHHHHHHHhcCCchhHHHHHHHHHHHHHhCChHHHHHHHcCCch
Confidence 0 011111 222222222 2234444332 2 2 45567788888888888888
Q ss_pred hHHHHhhhccC
Q psy12605 541 CSRYLYYLSHN 551 (845)
Q Consensus 541 ~~~L~~ll~~~ 551 (845)
++.|+..+.++
T Consensus 519 l~~L~~~i~~~ 529 (651)
T 3grl_A 519 VPFLTGQIAEN 529 (651)
T ss_dssp HHHHHHHHHSC
T ss_pred HHHHHHHHHhc
Confidence 88888777543
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-17 Score=199.00 Aligned_cols=642 Identities=13% Similarity=0.131 Sum_probs=373.7
Q ss_pred HHHHHHHHcC--CChHHHHHHHHHHHHHHcCCCC-------ccHH---HHHhcCCHHHHHHhhccCCChhHHHHHHHHHH
Q psy12605 47 DMLVVEAARK--DNPELQLLAVQSARKLLSSDKN-------PPIE---ALIHSGILPVLVECLERSDRPNLQFEAAWALT 114 (845)
Q Consensus 47 ~~lv~~~l~~--~~~~~~~~a~~~l~~ll~~~~~-------~~~~---~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~ 114 (845)
..++ ..+.+ .++..|..|...|++.+..... ..+. .-....+-+.|++.|. +.++.+ ..++.++.
T Consensus 38 ~~L~-~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~w~~l~~~~~~~ik~~ll~~l~-~~~~~~-~~~~~~l~ 114 (876)
T 1qgr_A 38 VELS-RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLG-TETYRP-SSASQCVA 114 (876)
T ss_dssp HHHH-HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-TCCSSS-CHHHHHHH
T ss_pred HHHH-HHHhCCCCCHHHHHHHHHHHHHhccccchHhHHHHHhhhccCCHHHHHHHHHHHHHHhC-CCcHHH-HHHHHHHH
Confidence 3455 55655 4688899999999997753210 0000 0011223445888884 455677 88899999
Q ss_pred HHhcCChhhHHHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCChhhHHHHHh--cCChhhHHhhhcCCC-CHH
Q psy12605 115 NIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGPQLRDYVIN--MGVVPPLLSFIKPDI-PIS 189 (845)
Q Consensus 115 ~la~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~~~~r~~i~~--~g~i~~Lv~ll~~~~-~~~ 189 (845)
.++..... ... -...+|.|++.+.++ ++.++..++.+|+.++.... .+.+.. ...++.+...+..+. +..
T Consensus 115 ~i~~~~~~-~~~--w~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~--~~~~~~~~~~ll~~l~~~l~~~~~~~~ 189 (876)
T 1qgr_A 115 GIACAEIP-VNQ--WPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNN 189 (876)
T ss_dssp HHHHHHGG-GTC--CTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHH
T ss_pred HHHHhhCc-ccc--cHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC--HhhHHhHHHHHHHHHHHhhcCCCCCHH
Confidence 98753100 000 135789999999998 89999999999999985421 111111 134566777776653 568
Q ss_pred HHHHHHHHHHHhhcCCCCC-CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 190 FLRNVTWVIVNLCRNKDPP-PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 190 ~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
++..|+.++.+++..-... .........++.+...+.+.+++ ++..+++++..+
T Consensus 190 vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~-------------------------vr~~a~~~l~~l 244 (876)
T 1qgr_A 190 VKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR-------------------------VRVAALQNLVKI 244 (876)
T ss_dssp HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHH-------------------------HHHHHHHHHHHH
Confidence 9999999999987642110 01111124677777777666666 888899999988
Q ss_pred hcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh---------------------hHHHHhcCCcc
Q psy12605 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE---------------------QTQVILNCDAL 327 (845)
Q Consensus 269 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~---------------------~~~~i~~~~~l 327 (845)
...........+...+++.++..+.+.++.++..|+.++.+++..... ...... ...+
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll 323 (876)
T 1qgr_A 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLV 323 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHh
Confidence 876555444444557788888888888899999999999998753210 000000 1345
Q ss_pred chhhHhhcC-------CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 328 SHFPALLTH-------PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 328 ~~L~~lL~~-------~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
+.++..+.. .+..+|..|..+|..++....+. ++ ..+++.+...+.+ .++.+|..|+++++.++
T Consensus 324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~~---~~-~~~l~~l~~~l~~-----~~~~~r~~a~~~l~~i~ 394 (876)
T 1qgr_A 324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDD---IV-PHVLPFIKEHIKN-----PDWRYRDAAVMAFGCIL 394 (876)
T ss_dssp HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGG---GH-HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTS
T ss_pred HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcHh---hH-HHHHHHHHHHccC-----CChHHHHHHHHHHHHHH
Confidence 666666642 34578899999998885432211 11 1234444455544 47999999999999999
Q ss_pred cCCh-HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHH---HHHHHhCCChHHHHhccCCCCChhHHHH
Q psy12605 401 SGTS-AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL---RDYVINMGVVPPLLSFIKPDIPISFLRN 476 (845)
Q Consensus 401 ~~~~-~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~---~~~l~~~g~l~~L~~ll~~~~~~~~~~~ 476 (845)
.+.. +..... -...++.++..+.++++.||..|+++|++++...+.. ... -..+++.++..+.+. ..++..
T Consensus 395 ~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~~l~~~--~~v~~~ 469 (876)
T 1qgr_A 395 EGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIEGLSAE--PRVASN 469 (876)
T ss_dssp SSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHHHTTSC--HHHHHH
T ss_pred cCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHHHHcCC--HHHHHH
Confidence 8664 333222 2347889999999999999999999999998753221 001 113456677777653 678889
Q ss_pred HHHHHHHhhcCCC-------------CCCChhHHHhHHHHHHHhhcCCC---hhHHHHHH--H-----------------
Q psy12605 477 VTWVIVNLCRNKD-------------PPPSMSTIIELLPALNILIHHHD---TSVSIYLW--L----------------- 521 (845)
Q Consensus 477 ~~~~l~nL~~~~~-------------~~~~~~~~~~~l~~l~~ll~~~d---~~v~~~~~--l----------------- 521 (845)
++|++.+++.... ...-...+..+++.+...+...+ ..+...++ +
T Consensus 470 a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~~~~ 549 (876)
T 1qgr_A 470 VCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQK 549 (876)
T ss_dssp HHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHHHHH
T ss_pred HHHHHHHHHHHhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHHHHH
Confidence 9999999987521 01112345667777777766432 22221111 1
Q ss_pred ---------------------------------------HhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccc
Q psy12605 522 ---------------------------------------SIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQH 562 (845)
Q Consensus 522 ---------------------------------------~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l 562 (845)
..+...-......-.-..+++.++..+.+.+....++..++
T Consensus 550 l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~ 629 (876)
T 1qgr_A 550 TTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDAL 629 (876)
T ss_dssp HHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHH
Confidence 11110000000000012345566666666532212233455
Q ss_pred cccccccCCChhhHHHHHhCCcccchHHhhcCC-ChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhh
Q psy12605 563 SIYMCVSPGTDEQTQVILNCDALSHFPALLTHP-KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641 (845)
Q Consensus 563 ~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~-~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 641 (845)
.+++.++..........+ ..+++.+...+.+. ++.++..++++++.++......+....+ .+++.+++.+.+
T Consensus 630 ~~l~~l~~~~~~~~~~~~-~~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~-~i~~~l~~~l~~----- 702 (876)
T 1qgr_A 630 MAVSTLVEVLGGEFLKYM-EAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCD-EVMQLLLENLGN----- 702 (876)
T ss_dssp HHHHHHHHHHGGGGGGGH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHGGGGHHHHH-HHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHhhHHHHH-HHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHhCC-----
Confidence 566555432111111111 12567777778776 8899999999999987432211222111 223333333210
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHh
Q psy12605 642 LNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISN 721 (845)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 721 (845)
.+.+.++|..+++++++
T Consensus 703 ---------------------------------------------------------------~~~~~~~~~~~~~~l~~ 719 (876)
T 1qgr_A 703 ---------------------------------------------------------------ENVHRSVKPQILSVFGD 719 (876)
T ss_dssp ---------------------------------------------------------------TTSCGGGHHHHHHHHHH
T ss_pred ---------------------------------------------------------------ccccHHhhHHHHHHHHH
Confidence 12456899999999999
Q ss_pred hcccCCHHHHHHHHHcCCchHHhhhhccc----c-------HHHHHHHHHHHHHHHHhhHH----------HHHHHHHHH
Q psy12605 722 LTISGNRDQVAKLVQEGVIPPFCDLLSCK----D-------AQVIQVVLDGINNMLKMADA----------QVETLANMI 780 (845)
Q Consensus 722 l~~~~~~~~~~~l~~~~~i~~L~~~L~~~----d-------~~~~~~al~~L~~l~~~~~~----------~~~~~~~~~ 780 (845)
++....++ ....+ ..+++.+...++.. | ..++..++.++..++..... .+.+|...
T Consensus 720 i~~~~g~~-~~~~l-~~~~~~l~~~~~~~~~~~d~~~~~~~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~- 796 (876)
T 1qgr_A 720 IALAIGGE-FKKYL-EVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEF- 796 (876)
T ss_dssp HHHHHGGG-GGGGH-HHHHHHHHHHHTCCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHH-
T ss_pred HHHHhchh-HHHHH-HHHHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHH-
Confidence 97321111 11111 13455555555432 1 26788888888887765321 11122221
Q ss_pred HHhChHHHHHhhhcCC--CHHHHHHHHHHHHHhcC
Q psy12605 781 EECGGLDKIEMLQNHE--NVEIYKLAYDIIERYFS 813 (845)
Q Consensus 781 ~e~g~~~~L~~l~~~~--~~~v~~~a~~~l~~~~~ 813 (845)
.+..+..+..++ +..+++.|...|..+..
T Consensus 797 ----i~~~l~~~~~~~~~~~~vr~~a~~~l~~l~~ 827 (876)
T 1qgr_A 797 ----ILSFIDHIAGDEDHTDGVVACAAGLIGDLCT 827 (876)
T ss_dssp ----HHHHHHHHHTCSCCCHHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 123344444555 67898888877776543
|
| >3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.8e-15 Score=162.18 Aligned_cols=285 Identities=13% Similarity=0.175 Sum_probs=228.5
Q ss_pred ChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhh
Q psy12605 174 VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKIL 251 (845)
Q Consensus 174 ~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~ 251 (845)
.|+.|++-+.+.+-.+=|+.|+..|..+++... .....++++.|+..++.. |.+
T Consensus 22 tI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y~----~~Vg~~~l~~li~~L~~d~~D~e-------------------- 77 (651)
T 3grl_A 22 TIQKLCDRVASSTLLDDRRNAVRALKSLSKKYR----LEVGIQAMEHLIHVLQTDRSDSE-------------------- 77 (651)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTTT----THHHHHTHHHHHHHHHSCTTCHH--------------------
T ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHhH----HHhhhhhHHHHHHHHhcccccHH--------------------
Confidence 477777777777777889999999999987552 244567899999998764 555
Q ss_pred hhhHHHHHHHHHHHHHhhcCChh-----------------hHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcC
Q psy12605 252 VSKMKILVDTVWALSYLTDGGND-----------------QIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 252 ~~~~~~~~~a~~~L~~l~~~~~~-----------------~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~ 313 (845)
+...++.+|.++...+.+ ... .+.+.+.++.|+.+|++.+..++.+++++|..++..
T Consensus 78 -----~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~ 152 (651)
T 3grl_A 78 -----IIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQ 152 (651)
T ss_dssp -----HHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhc
Confidence 777788888766443221 111 223557899999999999999999999999999988
Q ss_pred Chh-hHHHHhcC-CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHH
Q psy12605 314 TDE-QTQVILNC-DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFE 391 (845)
Q Consensus 314 ~~~-~~~~i~~~-~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~ 391 (845)
.+. .++.+... ++++.|+.+|++..+.+|.+++..|.+++.++.+..+.+.-.|+++.|+.++...+.. +...+...
T Consensus 153 r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~-~Ggivv~D 231 (651)
T 3grl_A 153 LGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNS-DGGIVVED 231 (651)
T ss_dssp SHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGG-GSHHHHHH
T ss_pred CcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCC-ccchhHHH
Confidence 776 66777755 9999999999999999999999999999999999888788899999999999987543 45678899
Q ss_pred HHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHH------HHHH---HHHHHHHhhcC------ChHHHHHHHhCC
Q psy12605 392 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN------VCEQ---AVWALGNIIGD------GPQLRDYVINMG 456 (845)
Q Consensus 392 a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~------v~~~---a~~~L~nl~~~------~~~~~~~l~~~g 456 (845)
+..++.++..+++.++..+.+.|+++.|..++..+.+. .... ++.++.-+... .+.+++.+.++|
T Consensus 232 CL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g 311 (651)
T 3grl_A 232 CLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCG 311 (651)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCC
Confidence 99999999999999999999999999999999865432 2222 44455555543 346788999999
Q ss_pred ChHHHHhccCC-CCChhHHHHHHHHHHHhhcCC
Q psy12605 457 VVPPLLSFIKP-DIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 457 ~l~~L~~ll~~-~~~~~~~~~~~~~l~nL~~~~ 488 (845)
++..|++++.. ..+..++..+..+++.++++.
T Consensus 312 ~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN 344 (651)
T 3grl_A 312 LLQQLCTILMATGVPADILTETINTVSEVIRGC 344 (651)
T ss_dssp HHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC
T ss_pred CHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC
Confidence 99999999864 346788888999999999887
|
| >1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A | Back alignment and structure |
|---|
Probab=99.74 E-value=2.4e-16 Score=192.75 Aligned_cols=609 Identities=13% Similarity=0.114 Sum_probs=369.4
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+.+++ ..+.++|++.+..|...|+++.... ..++++.|++.|..+ .++.+|..|+.+|.+......+.
T Consensus 2 ~l~~~L-~~~~s~d~~~r~~A~~~L~~~~~~~---------~~~~~~~L~~~l~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (876)
T 1qgr_A 2 ELITIL-EKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (876)
T ss_dssp CHHHHH-HGGGCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred cHHHHH-HHhcCCCHHHHHHHHHHHHHHHhcC---------hhhHHHHHHHHHhCCCCCHHHHHHHHHHHHHhccccchH
Confidence 355677 7788999999999999998854321 134678889988543 46789999999999965432111
Q ss_pred HHHH-----------HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-CHHHH
Q psy12605 124 TQEV-----------VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFL 191 (845)
Q Consensus 124 ~~~i-----------~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~ 191 (845)
++.. .....-+.+++.|.++++.+ ..++.+++.++...- ... .-...++.++..+.++. +..++
T Consensus 72 ~~~~~~~~w~~l~~~~~~~ik~~ll~~l~~~~~~~-~~~~~~l~~i~~~~~-~~~--~w~~ll~~l~~~l~~~~~~~~~r 147 (876)
T 1qgr_A 72 IKAQYQQRWLAIDANARREVKNYVLHTLGTETYRP-SSASQCVAGIACAEI-PVN--QWPELIPQLVANVTNPNSTEHMK 147 (876)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCSSS-CHHHHHHHHHHHHHG-GGT--CCTTHHHHHHHHHHCTTCCHHHH
T ss_pred hHHHHHhhhccCCHHHHHHHHHHHHHHhCCCcHHH-HHHHHHHHHHHHhhC-ccc--ccHHHHHHHHHHHhCCCCCHHHH
Confidence 1100 00112334888888888888 889999998874310 000 01235677778787653 45789
Q ss_pred HHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhh
Q psy12605 192 RNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLT 269 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~ 269 (845)
..++.+|..++....+..........++.+.+.+.++ +.. ++..+++++..+.
T Consensus 148 ~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~-------------------------vr~~a~~~l~~~~ 202 (876)
T 1qgr_A 148 ESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN-------------------------VKLAATNALLNSL 202 (876)
T ss_dssp HHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHH-------------------------HHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHhcCHhhHHhHHHHHHHHHHHhhcCCCCCHH-------------------------HHHHHHHHHHHHH
Confidence 9999999999875321111123345667777777665 344 7778888888776
Q ss_pred cCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHH
Q psy12605 270 DGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWF 348 (845)
Q Consensus 270 ~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~ 348 (845)
..-..... ......+++.+...+.+++.+++..++.+|..++..........+...+++.++..+.+.++.++..++.+
T Consensus 203 ~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~ 282 (876)
T 1qgr_A 203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEF 282 (876)
T ss_dssp GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence 43221110 01111356677777788889999999999999986554432333333577778887888889999999999
Q ss_pred HHHhhcCChH---------------------HHHHHHhcCChHHHHHHhhhccc--ccCChhHHHHHHHHHHHHhcCChH
Q psy12605 349 LSNITAGNQA---------------------QVQAVIDAGLLPKIIANLQKVGR--IVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 349 L~nl~~~~~~---------------------~~~~l~~~~~i~~Lv~lL~~~~~--~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
+..++..... ..+..+ ..+++.+++.+..... ..+++.++..|..++..++...++
T Consensus 283 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~ 361 (876)
T 1qgr_A 283 WSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (876)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH
Confidence 9888643210 000001 2356677777754211 014678999999999998764332
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-Q-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
. ++ ...++.+...+.++++.+|..|+++++.++.... + ....+ ...++.++..+.+. +..++..++|++++
T Consensus 362 ~---~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~~--~~~l~~l~~~l~d~-~~~vr~~a~~~l~~ 434 (876)
T 1qgr_A 362 D---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDP-SVVVRDTAAWTVGR 434 (876)
T ss_dssp G---GH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH--HHHHHHHHHHHTCS-SHHHHHHHHHHHHH
T ss_pred h---hH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHHH--HHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 1 11 1356677788889999999999999999997543 3 22222 33677888888653 45788899999999
Q ss_pred hhcCCCCCC-ChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCch---------------hhHHHHhhhhhhHHHH
Q psy12605 484 LCRNKDPPP-SMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQ---------------ISKILVSKMKVCSRYL 545 (845)
Q Consensus 484 L~~~~~~~~-~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~---------------~~~~~~~~~~~~~~L~ 545 (845)
++....+.. ....+...++.+...+.+. +.+... +| +..+..... .... .-..+++.++
T Consensus 435 ~~~~~~~~~~~~~~l~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~~~~~~~~~~~l~~--~~~~il~~L~ 511 (876)
T 1qgr_A 435 ICELLPEAAINDVYLAPLLQCLIEGLSAE-PRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSS--SFELIVQKLL 511 (876)
T ss_dssp HHHHCGGGTSSTTTHHHHHHHHHHHTTSC-HHHHHHHHHHHHHHHHHHHHTTSCTTSCCCCCCCSSTT--THHHHHHHHH
T ss_pred HHHhCchhcccHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhhhccccccccccccchhhhH--hHHHHHHHHH
Confidence 998653321 2345678888888888774 666554 55 555543211 0000 0135677777
Q ss_pred hhhccCCCC-cccccccccccccccCCChhhHHHHHhCCcccchHHhhc-----------CCC----hhHHHHHHHHHhh
Q psy12605 546 YYLSHNSGP-MSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLT-----------HPK----EKICKEAVWFLSN 609 (845)
Q Consensus 546 ~ll~~~~~~-~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~-----------~~~----~~v~~~a~~~Lsn 609 (845)
.++...+.. ......++.+++.++.......... -..+++.+...+. +.+ ++++..++++++.
T Consensus 512 ~~l~~~~~~~~~~r~~~~~~l~~l~~~~~~~~~~~-~~~l~~~l~~~l~~~~~~~~~~~~~~d~~~~~~~~~~~~~~l~~ 590 (876)
T 1qgr_A 512 ETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPA-VQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQN 590 (876)
T ss_dssp HHTTSCSSCSTTHHHHHHHHHHHHHHTCCSTTHHH-HHHHHHHHHHHHHHHHTTTTSCCSTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHhCcCcchhhHHHHHHHHHHHHHHHCchhhHHH-HHHHHHHHHHHHHHHHHHHhccCChhhHHHHHHHHHHHHHHHHH
Confidence 777765321 1222234444444422111101110 0122233333322 122 4677888999988
Q ss_pred hccCCH-HHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhcccc
Q psy12605 610 ITAGNQ-AQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATG 688 (845)
Q Consensus 610 l~~~~~-~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (845)
++.... ..+..+.. .++|.+++++.+
T Consensus 591 l~~~~~~~~~~~~~~-~l~~~l~~~l~~---------------------------------------------------- 617 (876)
T 1qgr_A 591 VLRKVQHQDALQISD-VVMASLLRMFQS---------------------------------------------------- 617 (876)
T ss_dssp HHTTSCHHHHHTTHH-HHHHHHHHHC------------------------------------------------------
T ss_pred HHHHhChhhhhHHHH-HHHHHHHHHHHh----------------------------------------------------
Confidence 876544 33332221 233344433310
Q ss_pred CcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccc-cHHHHHHHHHHHHHHHH
Q psy12605 689 GFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK-DAQVIQVVLDGINNMLK 767 (845)
Q Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~-d~~~~~~al~~L~~l~~ 767 (845)
..+...++..++.+++.++... .......+. .+++.++..|.+. +..++..++.++..|.+
T Consensus 618 ----------------~~~~~~v~~~a~~~l~~l~~~~-~~~~~~~~~-~~~~~l~~~l~~~~~~~vr~~a~~~l~~l~~ 679 (876)
T 1qgr_A 618 ----------------TAGSGGVQEDALMAVSTLVEVL-GGEFLKYME-AFKPFLGIGLKNYAEYQVCLAAVGLVGDLCR 679 (876)
T ss_dssp -------------------CCHHHHHHHHHHHHHHHHH-GGGGGGGHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHH
T ss_pred ----------------ccCCCCccHHHHHHHHHHHHHH-HhhHHHHHH-HHHHHHHHHHcCcchHHHHHHHHHHHHHHHH
Confidence 1111467888999998887321 111112222 3667778888876 78999999999999988
Q ss_pred hhHHHHHH
Q psy12605 768 MADAQVET 775 (845)
Q Consensus 768 ~~~~~~~~ 775 (845)
.....+.+
T Consensus 680 ~~~~~~~~ 687 (876)
T 1qgr_A 680 ALQSNIIP 687 (876)
T ss_dssp HHGGGGHH
T ss_pred HHHHhhhh
Confidence 65544333
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.72 E-value=7.3e-16 Score=195.02 Aligned_cols=642 Identities=12% Similarity=0.104 Sum_probs=394.9
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.++.++ +.+.++|+..+..|...|.+.+...... .+.-....+++.|++.|. +.++.+|..|+.+|..++...++
T Consensus 7 ~l~~lL-~~l~s~d~~~R~~A~~~L~~~l~~~~~~-~~~~~~~~il~~Ll~~L~-d~~~~vR~~A~~~L~~l~~~~~~-- 81 (1230)
T 1u6g_C 7 HISNLL-EKMTSSDKDFRFMATNDLMTELQKDSIK-LDDDSERKVVKMILKLLE-DKNGEVQNLAVKCLGPLVSKVKE-- 81 (1230)
T ss_dssp HHHHHH-HHTTCSSHHHHHHHHHHHHHHTSSSCCS-CCTTHHHHHHHHHHHHTT-CSSHHHHHHHHHHHHHHHTTSCH--
T ss_pred HHHHHH-HhcCCCCHhHHHHHHHHHHHHHcccccC-CChhHHHHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHhCCH--
Confidence 467888 8899999999999999999887643211 111112346888999994 77899999999999999875443
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh------HHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHH
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL------RDYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 198 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~------r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 198 (845)
..+ ...++.|+..|.++++.+|..|+.+|+.++...... .... -...+|.|+..+....+..++..|+.++
T Consensus 82 ~~~--~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~-~~~llp~L~~~l~~~~~~~~~~~al~~l 158 (1230)
T 1u6g_C 82 YQV--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV-CKKITGRLTSAIAKQEDVSVQLEALDIM 158 (1230)
T ss_dssp HHH--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH-HHHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred HHH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH-HHHHHHHHHHHHcCCCchHHHHHHHHHH
Confidence 111 236788999999999999999999999998543321 1111 1235788888887433568999999999
Q ss_pred HHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHH
Q psy12605 199 VNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQM 278 (845)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 278 (845)
..++........ ......++.+...+.++++. ++..|+.++..++....+.
T Consensus 159 ~~~~~~~~~~l~-~~~~~ll~~l~~~L~~~~~~-------------------------vR~~a~~al~~l~~~~~~~--- 209 (1230)
T 1u6g_C 159 ADMLSRQGGLLV-NFHPSILTCLLPQLTSPRLA-------------------------VRKRTIIALGHLVMSCGNI--- 209 (1230)
T ss_dssp HHHHHHTCSSCT-TTHHHHHHHHGGGGGCSSHH-------------------------HHHHHHHHHHHHTTTC------
T ss_pred HHHHHHhHhHHH-HHHHHHHHHHHHHHcCCcHH-------------------------HHHHHHHHHHHHHHhcCHH---
Confidence 999874322111 23567888888888887777 8899999999888754432
Q ss_pred HHhcCchhhHHhhccCC-chhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCCh
Q psy12605 279 VIDSGVVPSLIPLLSHK-EVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL~~~-~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 357 (845)
+ -..+++.++..|.+. +..++..++.+++.++...+..... .-..+++.++..+.+.++++|..++.++..++...+
T Consensus 210 ~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~ 287 (1230)
T 1u6g_C 210 V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 287 (1230)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHCh
Confidence 1 224577777777443 3467888899999987643321111 112577888888888889999999999998876533
Q ss_pred HHHHHHHhcCChHHHHHHhhhcc---------------------c-----------ccCChhHHHHHHHHHHHHhcCChH
Q psy12605 358 AQVQAVIDAGLLPKIIANLQKVG---------------------R-----------IVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 358 ~~~~~l~~~~~i~~Lv~lL~~~~---------------------~-----------~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
......+ ..+++.++..+.... + ....+.+|..|+.++..++...++
T Consensus 288 ~~~~~~l-~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~ 366 (1230)
T 1u6g_C 288 KEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 366 (1230)
T ss_dssp CCCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHhH-HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHhchh
Confidence 2111111 223444444332100 0 001356799999999999875443
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh----------------HHHHHH--HhCCChHHHHhccCC
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP----------------QLRDYV--INMGVVPPLLSFIKP 467 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~----------------~~~~~l--~~~g~l~~L~~ll~~ 467 (845)
....++ ...++.++..+.+.++++|..++.++..+..... .....+ .-..+++.+...+.+
T Consensus 367 ~~~~~~-~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~ 445 (1230)
T 1u6g_C 367 MLPEFY-KTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE 445 (1230)
T ss_dssp THHHHH-TTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHHH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHHhhHHHHHHHHHhcc
Confidence 222222 4567888888888899999999998887764110 011111 111234444555654
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCCh--hHHHHHH--HHhhhc--CchhhHHHHhhhhhh
Q psy12605 468 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT--SVSIYLW--LSIIEK--NPQISKILVSKMKVC 541 (845)
Q Consensus 468 ~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~--~v~~~~~--l~~l~~--~~~~~~~~~~~~~~~ 541 (845)
. +..++..++.+++.++...+. .-...+..+++.+..++.+... .+...++ +..+.. +++.....+ ..++
T Consensus 446 ~-~~~vr~~~~~~L~~l~~~~~~-~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l--~~ll 521 (1230)
T 1u6g_C 446 K-SVKTRQCCFNMLTELVNVLPG-ALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV--QALV 521 (1230)
T ss_dssp S-CHHHHHHHHHHHHHHHHHSTT-TTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH--TTTH
T ss_pred C-CHHHHHHHHHHHHHHHHHchh-hhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH--HHHH
Confidence 3 446677788888888876422 2234677889999988887653 5544322 332221 222111111 2567
Q ss_pred HHHHhhhccCCCCcccccccccccccccC--CC------hhhHHHHHhCCcccchHHhh--cCCChhHHHHHHHHHhhhc
Q psy12605 542 SRYLYYLSHNSGPMSCQKKQHSIYMCVSP--GT------DEQTQVILNCDALSHFPALL--THPKEKICKEAVWFLSNIT 611 (845)
Q Consensus 542 ~~L~~ll~~~~~~~~~~~~~l~~l~nl~~--~~------~~~~~~l~~~~~l~~L~~ll--~~~~~~v~~~a~~~Lsnl~ 611 (845)
+.++..+.+.+..+ ...++.+++.++. +. ...... -..+++.+...+ .+.++.+|..|+.+++.++
T Consensus 522 p~L~~~l~d~~~~v--~~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~ 597 (1230)
T 1u6g_C 522 PPVVACVGDPFYKI--TSEALLVTQQLVKVIRPLDQPSSFDATPY--IKDLFTCTIKRLKAADIDQEVKERAISCMGQII 597 (1230)
T ss_dssp HHHHHHHTCSSHHH--HHHHHHHHHHHHHHHCCSSSCCCCCCHHH--HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcccchHH--HHHHHHHHHHHHHHhcCcccccccchHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 77777766543322 1223444443321 11 011010 112455667777 5567899999999999887
Q ss_pred cCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcc
Q psy12605 612 AGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFT 691 (845)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (845)
....... ...++.++..|..
T Consensus 598 ~~~g~~~-----~~~~~~~l~~L~~------------------------------------------------------- 617 (1230)
T 1u6g_C 598 CNLGDNL-----GSDLPNTLQIFLE------------------------------------------------------- 617 (1230)
T ss_dssp HHTGGGC-----CTHHHHHHHHHHH-------------------------------------------------------
T ss_pred HHhCchh-----hhhHHHHHHHHHH-------------------------------------------------------
Confidence 4322111 1123344433310
Q ss_pred hhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHH
Q psy12605 692 LFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA 771 (845)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~ 771 (845)
.-.++..|..++.+++.++........... -..+++.|...+...+..++.+++.+|..++.....
T Consensus 618 -------------~l~~e~~r~~~~~al~~i~~~~~~~~~~~~-~~~i~~~L~~~l~~~~~~~r~~a~~al~~l~~~~~~ 683 (1230)
T 1u6g_C 618 -------------RLKNEITRLTTVKALTLIAGSPLKIDLRPV-LGEGVPILASFLRKNQRALKLGTLSALDILIKNYSD 683 (1230)
T ss_dssp -------------HTTSSSHHHHHHHHHHHHTTCSSCCCCHHH-HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred -------------HhccchhHHHHHHHHHHHHhCccccchHHH-HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcccc
Confidence 011234677888888888732211111112 235677888888999999999999999999987643
Q ss_pred HH--HHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhcCcc
Q psy12605 772 QV--ETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEV 815 (845)
Q Consensus 772 ~~--~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 815 (845)
.. ..+...+ ..+..+.+.++..+...+..+|.+++...
T Consensus 684 ~~~~~~v~~~l------~~ll~ll~~~D~~~~~~~~~~L~~l~~~~ 723 (1230)
T 1u6g_C 684 SLTAAMIDAVL------DELPPLISESDMHVSQMAISFLTTLAKVY 723 (1230)
T ss_dssp TCCHHHHHHHH------TTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred cCCHHHHHHHH------HHHHhhcCcchHHHHHHHHHHHHHHHHhC
Confidence 21 1111111 11123445677788888999999887654
|
| >2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=168.12 Aligned_cols=363 Identities=16% Similarity=0.177 Sum_probs=256.7
Q ss_pred HHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCC
Q psy12605 53 AARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGA 132 (845)
Q Consensus 53 ~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~ 132 (845)
.++++++..+..|+.++..+. .....+ .++|.+.++| .+.++.+|..|+.++.+++..+++.. .+.+.
T Consensus 94 dL~~~n~~ir~~AL~~L~~i~---~~~~~~-----~l~~~l~~~L-~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~ 161 (591)
T 2vgl_B 94 DCEDPNPLIRALAVRTMGCIR---VDKITE-----YLCEPLRKCL-KDEDPYVRKTAAVCVAKLHDINAQMV---EDQGF 161 (591)
T ss_dssp GSSSSSHHHHHHHHHHHHTCC---SGGGHH-----HHHHHHHHHS-SCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHH
T ss_pred HcCCCCHHHHHHHHHHHHcCC---hHHHHH-----HHHHHHHHHc-CCCChHHHHHHHHHHHHHHhhChhhc---ccccH
Confidence 355666666666666665432 111122 2477789999 47899999999999999998666533 23578
Q ss_pred hHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChh
Q psy12605 133 VPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 212 (845)
Q Consensus 133 i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 212 (845)
++.|.++|+++++.++..|+.+|+.++.++++.+......+.++.|+..+... +...+..++.++..++.. ...
T Consensus 162 ~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~-----~~~ 235 (591)
T 2vgl_B 162 LDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPK-----DDR 235 (591)
T ss_dssp HHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCC-----SHH
T ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCC-----ChH
Confidence 89999999999999999999999999987753310000112355566666544 346666777777666532 223
Q ss_pred HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC---ChhhHHHHHhcCchhhHH
Q psy12605 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG---GNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~---~~~~~~~~~~~g~i~~Lv 289 (845)
....+++.+..++++.++. ++..|++++.++... +++..+.+ -..+.+.|+
T Consensus 236 ~~~~~l~~l~~~l~~~~~~-------------------------V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~ 289 (591)
T 2vgl_B 236 EAQSICERVTPRLSHANSA-------------------------VVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLV 289 (591)
T ss_dssp HHHHHHHHHTTCSCSSTTH-------------------------HHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHH
T ss_pred HHHHHHHHHHHHHcCCChH-------------------------HHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHH
Confidence 4567889999999988888 999999999998752 33444433 235567777
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
.++. +++.++..|+++|+.++...+.... ..+..+. .+.+.+..+|..++++|.+++... ..+ .++
T Consensus 290 ~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~-----~~~~~~~-~~~~d~~~Ir~~al~~L~~l~~~~--nv~-----~iv 355 (591)
T 2vgl_B 290 TLLS-GEPEVQYVALRNINLIVQKRPEILK-----QEIKVFF-VKYNDPIYVKLEKLDIMIRLASQA--NIA-----QVL 355 (591)
T ss_dssp HHTT-SCHHHHHHHHHHHHHHHHHCCSTTT-----TCTTTTS-CCTTSCHHHHHHHHHHHHHTCCSS--THH-----HHH
T ss_pred HHhc-CCccHHHHHHHHHHHHHHhChHHHH-----HHHHhhe-eccCChHHHHHHHHHHHHHHCChh--hHH-----HHH
Confidence 6664 7889999999999999865433111 1122222 222344899999999999986443 222 245
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 449 (845)
+.|.+++.+ .+++++..++++++.++...+.... ..++.|+.++......++..++.++.++....+..
T Consensus 356 ~~L~~~l~~-----~d~~~r~~~v~aI~~la~~~~~~~~-----~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~- 424 (591)
T 2vgl_B 356 AELKEYATE-----VDVDFVRKAVRAIGRCAIKVEQSAE-----RCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNK- 424 (591)
T ss_dssp HHHHHHTTS-----SCHHHHHHHHHHHHHHHTTCHHHHH-----HHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSS-
T ss_pred HHHHHHHhc-----CCHHHHHHHHHHHHHHHHhChhHHH-----HHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcch-
Confidence 667777765 3789999999999999987653322 35789999999999999999999999987655543
Q ss_pred HHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 450 ~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
...++..|...+......+.+..++|+++..+...
T Consensus 425 ----~~~~v~~L~~~l~~~~~~~~~~~~~wilGey~~~~ 459 (591)
T 2vgl_B 425 ----YESIIATLCENLDSLDEPDARAAMIWIVGEYAERI 459 (591)
T ss_dssp ----CCTTHHHHHHTTTTCCSHHHHHHHHHHHHTTCTTC
T ss_pred ----HHHHHHHHHHHHHhccCHHHHHHHHHHHHcccccc
Confidence 35678888888887666788899999999987655
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=6.6e-14 Score=162.55 Aligned_cols=360 Identities=12% Similarity=0.087 Sum_probs=261.1
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
+.++- +.+++++...+..++..+-++...+.+. ..+.+..++++. +++...++.+...+..++..+++...
T Consensus 36 ~~~ir-~~l~~~~~~~k~~~l~kli~~~~~G~d~-------~~~~~~vik~~~-s~~~~~Krl~Yl~~~~~~~~~~e~~~ 106 (618)
T 1w63_A 36 CAAIR-SSFREEDNTYRCRNVAKLLYMHMLGYPA-------HFGQLECLKLIA-SQKFTDKRIGYLGAMLLLDERQDVHL 106 (618)
T ss_dssp HHHHH-HHHTTTCTTTHHHHHHHHHHHHHTTCCC-------GGGHHHHHHHHH-SSSHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred HHHHH-HHhhCCCHHHHHHHHHHHHHHHHcCCCC-------cchHHHHHHHHc-CCchHHHHHHHHHHHHHhCCCcHHHH
Confidence 44444 6788877777777887777776655432 225666788884 67788899888899999876655333
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
. ++..|.+-|+++++.++..|+++|+++.. ++..+ ..++.+..++.+. +..+|+.|+.++.++++..
T Consensus 107 l-----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~~-----~l~~~l~~~L~~~-~~~VRk~A~~al~~l~~~~ 173 (618)
T 1w63_A 107 L-----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMCR-----DLAGEVEKLLKTS-NSYLRKKAALCAVHVIRKV 173 (618)
T ss_dssp H-----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHHH-----HHHHHHHHHHHSC-CHHHHHHHHHHHHHHHHHC
T ss_pred H-----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHHH-----HHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHC
Confidence 2 67888999999999999999999999983 33322 2467788888876 5589999999999999865
Q ss_pred CCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch
Q psy12605 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 206 ~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i 285 (845)
+ ....+.++.+..++.+.|+. ++..|+++|..+...+++....+ ...+
T Consensus 174 p-----~~v~~~~~~l~~lL~D~d~~-------------------------V~~~Al~~L~~i~~~~~~~~~~~--~~~v 221 (618)
T 1w63_A 174 P-----ELMEMFLPATKNLLNEKNHG-------------------------VLHTSVVLLTEMCERSPDMLAHF--RKLV 221 (618)
T ss_dssp G-----GGGGGGGGGTTTSTTCCCHH-------------------------HHHHHHHHHHHHCCSHHHHHHHH--HTTH
T ss_pred h-----HHHHHHHHHHHHHhCCCCHh-------------------------HHHHHHHHHHHHHHhChHHHHHH--HHHH
Confidence 2 12347788888888888888 89999999999987655432233 2567
Q ss_pred hhHHhhccC---------------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc------CCchhhHHH
Q psy12605 286 PSLIPLLSH---------------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT------HPKEKICKE 344 (845)
Q Consensus 286 ~~Lv~lL~~---------------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~------~~~~~~~~~ 344 (845)
+.++..|.+ +++-.+...+++|+.++..++.... ...+.|..++. +.+..+..+
T Consensus 222 ~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~-----~~~~~L~~l~~~~~~~~~~~~aV~~e 296 (618)
T 1w63_A 222 PQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSE-----AMNDILAQVATNTETSKNVGNAILYE 296 (618)
T ss_dssp HHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHHHTSCCSSTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHH-----HHHHHHHHHHhccccccchHHHHHHH
Confidence 777777642 4788899999999999876554332 23444555542 234678889
Q ss_pred HHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC
Q psy12605 345 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 424 (845)
Q Consensus 345 a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~ 424 (845)
|++++..+.. .+.... .+++.|..++.+. ++.+|..|..++..++...+... ......++.++.
T Consensus 297 a~~~i~~l~~-~~~l~~-----~a~~~L~~~L~~~-----d~~vr~~aL~~L~~i~~~~p~~~-----~~~~~~i~~~l~ 360 (618)
T 1w63_A 297 TVLTIMDIKS-ESGLRV-----LAINILGRFLLNN-----DKNIRYVALTSLLKTVQTDHNAV-----QRHRSTIVDCLK 360 (618)
T ss_dssp HHHHHHHSCC-CHHHHH-----HHHHHHHHHHTCS-----STTTHHHHHHHHHHHHHHHHHHH-----GGGHHHHHHGGG
T ss_pred HHHHHHhcCC-CHHHHH-----HHHHHHHHHHhCC-----CCchHHHHHHHHHHHHhhCHHHH-----HHHHHHHHHHcc
Confidence 9999998743 232211 3467788888763 78999999999999987544321 235567889999
Q ss_pred CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 425 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 425 ~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+++..|+..|+.+|..++.... ... +++.|..++.. .+.++++.++.+++.+|...
T Consensus 361 d~d~~Ir~~alelL~~l~~~~n-v~~------iv~eL~~~l~~-~d~e~r~~~v~~I~~la~k~ 416 (618)
T 1w63_A 361 DLDVSIKRRAMELSFALVNGNN-IRG------MMKELLYFLDS-CEPEFKADCASGIFLAAEKY 416 (618)
T ss_dssp SSCHHHHHHHHHHHHHHCCSSS-THH------HHHHHHHHHHH-CCHHHHHHHHHHHHHHHHSS
T ss_pred CCChhHHHHHHHHHHHHccccc-HHH------HHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999987542 111 24566666654 44688999999999998754
|
| >1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A | Back alignment and structure |
|---|
Probab=99.60 E-value=5.7e-14 Score=177.67 Aligned_cols=429 Identities=15% Similarity=0.131 Sum_probs=262.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ 125 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~ 125 (845)
++.++ ..+.++++.++..|+.++..+.....+. + -..+++.|++.|....++..+..++.++..++...++...
T Consensus 177 l~~l~-~~L~~~~~~vR~~a~~al~~l~~~~~~~----~-~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~ 250 (1230)
T 1u6g_C 177 LTCLL-PQLTSPRLAVRKRTIIALGHLVMSCGNI----V-FVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIG 250 (1230)
T ss_dssp HHHHG-GGGGCSSHHHHHHHHHHHHHHTTTC---------CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGT
T ss_pred HHHHH-HHHcCCcHHHHHHHHHHHHHHHHhcCHH----H-HHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHhHHHHH
Confidence 34444 5677888999999999999987654322 1 2346899999986554456788889999988864332111
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhcCC-------------------
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKPD------------------- 185 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~~~------------------- 185 (845)
..+ ...+|.+++.+.++++++|+.++.+++.++...++ .+..+ ...++.++..+..+
T Consensus 251 ~~l-~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~ 327 (1230)
T 1u6g_C 251 EYL-EKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADG 327 (1230)
T ss_dssp TSC-TTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC-------------------
T ss_pred HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccc
Confidence 111 36899999999999999999999999998865332 22221 12345555544311
Q ss_pred -----------------CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhH
Q psy12605 186 -----------------IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQIS 248 (845)
Q Consensus 186 -----------------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~ 248 (845)
..-.+|+.|+.++..++... +..........+|.+...+.+.++.
T Consensus 328 ~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~-~~~~~~~~~~l~~~l~~~l~d~~~~----------------- 389 (1230)
T 1u6g_C 328 GDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTR-HEMLPEFYKTVSPALISRFKEREEN----------------- 389 (1230)
T ss_dssp -----------------CTTHHHHHHHHHHHHHHTTC-CTTHHHHHTTTHHHHHSTTSCSSSH-----------------
T ss_pred cccchhhcccccccccccCHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHHHHHHHHcCCCchH-----------------
Confidence 01246888899999988743 2112334456778887777766666
Q ss_pred HhhhhhHHHHHHHHHHHHHhhcCC-------------------hhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHH
Q psy12605 249 KILVSKMKILVDTVWALSYLTDGG-------------------NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGN 309 (845)
Q Consensus 249 ~~~~~~~~~~~~a~~~L~~l~~~~-------------------~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~n 309 (845)
++..++.++..+.... ......+ -..+++.+...+.++++.++..++.+++.
T Consensus 390 --------Vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~~ll~~l~~~l~~~~~~vr~~~~~~L~~ 460 (1230)
T 1u6g_C 390 --------VKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQ-VPNIVKALHKQMKEKSVKTRQCCFNMLTE 460 (1230)
T ss_dssp --------HHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHH-TTHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred --------HHHHHHHHHHHHHHHhccccccccCccccccccchHHHHHHH-hhHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence 6666666665443210 0111111 12345556666888899999999999999
Q ss_pred HhcCChhhHHHHhcCCccchhhHhhcCCc--hhhHHHHHHHHHHhhcC-ChHHHHHHHhcCChHHHHHHhhhcccccCCh
Q psy12605 310 IVTGTDEQTQVILNCDALSHFPALLTHPK--EKICKEAVWFLSNITAG-NQAQVQAVIDAGLLPKIIANLQKVGRIVLRP 386 (845)
Q Consensus 310 l~~~~~~~~~~i~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~nl~~~-~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~ 386 (845)
++........... ..+++.+...|.+.. ..++..++..+..+... .+......+ ..++|.++..+.+. ++
T Consensus 461 l~~~~~~~l~~~l-~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~l-~~llp~L~~~l~d~-----~~ 533 (1230)
T 1u6g_C 461 LVNVLPGALTQHI-PVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHV-QALVPPVVACVGDP-----FY 533 (1230)
T ss_dssp HHHHSTTTTGGGH-HHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHH-TTTHHHHHHHHTCS-----SH
T ss_pred HHHHchhhhHHHH-HHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCCHHHHHhHH-HHHHHHHHHHHccc-----ch
Confidence 8864322111011 146677888887765 48899999988887542 232222222 46889999888763 67
Q ss_pred hHHHHHHHHHHHHhcC--C------hHhHHHHHHcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcCCh--------HH
Q psy12605 387 NLQFEAAWALTNIASG--T------SAQTQEVVAAGAVPLFLRLL--MSPHSNVCEQAVWALGNIIGDGP--------QL 448 (845)
Q Consensus 387 ~v~~~a~~~L~~l~~~--~------~~~~~~l~~~g~i~~Lv~lL--~~~~~~v~~~a~~~L~nl~~~~~--------~~ 448 (845)
.++..+++++..++.. . ...... -...++.++..+ .+.++++|..|+.+++.++.... .+
T Consensus 534 ~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~--~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~g~~~~~~~~~~ 611 (1230)
T 1u6g_C 534 KITSEALLVTQQLVKVIRPLDQPSSFDATPY--IKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNT 611 (1230)
T ss_dssp HHHHHHHHHHHHHHHHHCCSSSCCCCCCHHH--HHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHTGGGCCTHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCcccccccchHHH--HHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhCchhhhhHHHH
Confidence 8888898899888732 1 011111 123567778888 66788999999999999985321 11
Q ss_pred HHHHHh-------------------------------CCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHH
Q psy12605 449 RDYVIN-------------------------------MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTI 497 (845)
Q Consensus 449 ~~~l~~-------------------------------~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~ 497 (845)
-..+.+ ..+++.|...+. ..+..++.+++.++..++...........+
T Consensus 612 l~~L~~~l~~e~~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~~l~-~~~~~~r~~a~~al~~l~~~~~~~~~~~~v 690 (1230)
T 1u6g_C 612 LQIFLERLKNEITRLTTVKALTLIAGSPLKIDLRPVLGEGVPILASFLR-KNQRALKLGTLSALDILIKNYSDSLTAAMI 690 (1230)
T ss_dssp HHHHHHHTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHHHTT-SCCHHHHHHHHHHHHHHHHHCCTTCCHHHH
T ss_pred HHHHHHHhccchhHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHhcccccCCHHHH
Confidence 111110 011222223332 234567888899999888866433333444
Q ss_pred HhHHHHHHHhhcCCChhHHHHHH
Q psy12605 498 IELLPALNILIHHHDTSVSIYLW 520 (845)
Q Consensus 498 ~~~l~~l~~ll~~~d~~v~~~~~ 520 (845)
...+..+..++...|.++...++
T Consensus 691 ~~~l~~ll~ll~~~D~~~~~~~~ 713 (1230)
T 1u6g_C 691 DAVLDELPPLISESDMHVSQMAI 713 (1230)
T ss_dssp HHHHTTCGGGSCTTCHHHHHHHH
T ss_pred HHHHHHHHhhcCcchHHHHHHHH
Confidence 44444434445556666655544
|
| >1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 | Back alignment and structure |
|---|
Probab=99.55 E-value=2.3e-12 Score=149.57 Aligned_cols=387 Identities=14% Similarity=0.163 Sum_probs=271.3
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
....+.+ +++.+++.+.+.-+..++..++..+ +..-. -++..|.+-| .++++.+|..|+++|+++.. ++.
T Consensus 70 ~~~~~vi-k~~~s~~~~~Krl~Yl~~~~~~~~~--~e~~~----l~in~l~kDL-~~~n~~vr~lAL~~L~~i~~--~~~ 139 (618)
T 1w63_A 70 FGQLECL-KLIASQKFTDKRIGYLGAMLLLDER--QDVHL----LMTNCIKNDL-NHSTQFVQGLALCTLGCMGS--SEM 139 (618)
T ss_dssp GGHHHHH-HHHHSSSHHHHHHHHHHHHHHCCCC--HHHHH----HHHHHHHHHH-SCSSSHHHHHHHHHHHHHCC--HHH
T ss_pred chHHHHH-HHHcCCchHHHHHHHHHHHHHhCCC--cHHHH----HHHHHHHHhc-CCCCHhHHHHHHHHHHhcCC--HHH
Confidence 3466778 7888999998888888887765533 21111 1477788888 47889999999999999973 443
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
.. ..++.+.++|.++++.+|..|+.+++++...+|+..+ +.++.+..++.+. +..++..|+++|..++.
T Consensus 140 ~~-----~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v~-----~~~~~l~~lL~D~-d~~V~~~Al~~L~~i~~ 208 (618)
T 1w63_A 140 CR-----DLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELME-----MFLPATKNLLNEK-NHGVLHTSVVLLTEMCE 208 (618)
T ss_dssp HH-----HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGGG-----GGGGGTTTSTTCC-CHHHHHHHHHHHHHHCC
T ss_pred HH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHHH-----HHHHHHHHHhCCC-CHhHHHHHHHHHHHHHH
Confidence 22 4688999999999999999999999999876665332 4677788888765 55899999999999986
Q ss_pred CCCCCCChhHHhhHHHHHHhhccc---------------CCchhhHHHHHHH---hhhChhhHHhhh-------------
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHH---------------HDTSVSIYLWLSI---IEKNPQISKILV------------- 252 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~---------------~~~~~~~~~~~~l---~~~~~~~~~~~~------------- 252 (845)
.... ........+|.++.++.+ .++..+...++.+ ...+|.....+.
T Consensus 209 ~~~~--~~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~ 286 (618)
T 1w63_A 209 RSPD--MLAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETS 286 (618)
T ss_dssp SHHH--HHHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCS
T ss_pred hChH--HHHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccc
Confidence 5411 012344667777776653 3666676666543 333443221110
Q ss_pred --hhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchh
Q psy12605 253 --SKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF 330 (845)
Q Consensus 253 --~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L 330 (845)
.+..+...|++++..+... +... ..+++.|..++.++++.++..|+.+|+.++...+. .+. ...+.+
T Consensus 287 ~~~~~aV~~ea~~~i~~l~~~-~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~---~~~--~~~~~i 355 (618)
T 1w63_A 287 KNVGNAILYETVLTIMDIKSE-SGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHN---AVQ--RHRSTI 355 (618)
T ss_dssp STHHHHHHHHHHHHHHHSCCC-HHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHH---HHG--GGHHHH
T ss_pred cchHHHHHHHHHHHHHhcCCC-HHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHH---HHH--HHHHHH
Confidence 1234667778887776432 2111 13567888889889999999999999999865332 221 255678
Q ss_pred hHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHH
Q psy12605 331 PALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEV 410 (845)
Q Consensus 331 ~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l 410 (845)
+.++++++..+|..|+.+|..++.... .+. +++.|...+.+ .+.+++..+..+++.++...+.....
T Consensus 356 ~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~-----~d~e~r~~~v~~I~~la~k~~~~~~~- 422 (618)
T 1w63_A 356 VDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDS-----CEPEFKADCASGIFLAAEKYAPSKRW- 422 (618)
T ss_dssp HHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHH-----CCHHHHHHHHHHHHHHHHSSCCCHHH-
T ss_pred HHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHhCccHHH-
Confidence 889999999999999999999966432 122 35677777776 47899999999999998743222111
Q ss_pred HHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCC-CCChhHHHHHHHHHHHhhc
Q psy12605 411 VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP-DIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 411 ~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~-~~~~~~~~~~~~~l~nL~~ 486 (845)
.++.|++++......++..++.++..+....++.+... +..|..++.. .....+.+.++|+++..+.
T Consensus 423 ----~v~~ll~lL~~~~~~v~~~~~~~l~~ii~~~p~l~~~~-----v~~L~~~l~~~~~~~~~~~~~~wilGEy~~ 490 (618)
T 1w63_A 423 ----HIDTIMRVLTTAGSYVRDDAVPNLIQLITNSVEMHAYT-----VQRLYKAILGDYSQQPLVQVAAWCIGEYGD 490 (618)
T ss_dssp ----HHHHHHHHHHHTGGGSCSSHHHHHHHHHHHSCSTHHHH-----HHHHHHHHHHCCSCSHHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHhccchhHHHHHHHHHHHHhcChhHHHHH-----HHHHHHHHhcccccHHHHHHHHHHHhhhHH
Confidence 26788888887777777777778888877666655443 4567777764 2345667789999998875
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.9e-13 Score=137.93 Aligned_cols=258 Identities=17% Similarity=0.141 Sum_probs=199.9
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL 165 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~ 165 (845)
..+.++.|++.|+ ++++.+|..|+++|..+.. + ++++.|+++|.++++.++..|+++|+.+.......
T Consensus 21 ~~~~i~~L~~~L~-~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~ 88 (280)
T 1oyz_A 21 KKLNDDELFRLLD-DHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE 88 (280)
T ss_dssp HTSCHHHHHHHTT-CSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred HHhhHHHHHHHHH-cCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence 4568999999994 6789999999999999962 2 37899999999999999999999999997543322
Q ss_pred HHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhCh
Q psy12605 166 RDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNP 245 (845)
Q Consensus 166 r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~ 245 (845)
.. .++.+...+.++.+..++..++++|.++..... ......++.|..++.++++.
T Consensus 89 ~~------l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~-----~~~~~~~~~L~~~l~d~~~~-------------- 143 (280)
T 1oyz_A 89 DN------VFNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTN-------------- 143 (280)
T ss_dssp HH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHH--------------
T ss_pred hH------HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC-----cccHHHHHHHHHHhhCCCHH--------------
Confidence 11 233344322233366899999999999985431 12456889999999998888
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCC
Q psy12605 246 QISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCD 325 (845)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~ 325 (845)
++..++++|..+.. .+.++.|+.++.++++.++..|+.+|+.+....+ .
T Consensus 144 -----------vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~ 192 (280)
T 1oyz_A 144 -----------VRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------D 192 (280)
T ss_dssp -----------HHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------H
T ss_pred -----------HHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------H
Confidence 89999999987643 3578999999999999999999999999843322 3
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
+++.|..++.++++.+|..|+++|+++. ....++.|+..+.+ ++++..++++|+.+..
T Consensus 193 ~~~~L~~~l~d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d-------~~vr~~a~~aL~~i~~---- 250 (280)
T 1oyz_A 193 IRDCFVEMLQDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKK-------NTVYDDIIEAAGELGD---- 250 (280)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTS-------SSCCHHHHHHHHHHCC----
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcC-------ccHHHHHHHHHHhcCc----
Confidence 5678999999999999999999999984 23578889998865 2488999999998853
Q ss_pred hHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGN 440 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~n 440 (845)
...++.|..++.+ .+++++..++.+|.+
T Consensus 251 -------~~~~~~L~~~l~~~~~~~~~~~~~~~l~~ 279 (280)
T 1oyz_A 251 -------KTLLPVLDTMLYKFDDNEIITSAIDKLKR 279 (280)
T ss_dssp -------GGGHHHHHHHHTTSSCCHHHHHHHHHHTC
T ss_pred -------hhhhHHHHHHHhcCCCcHHHHHHHHHhhc
Confidence 2468889999965 567788777777643
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.51 E-value=2.2e-13 Score=153.21 Aligned_cols=414 Identities=14% Similarity=0.132 Sum_probs=271.2
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+.+++ ..+.++|...+..|...|..+...+ ..+.++.|++++..+ .++.+|..|+..|.++.......
T Consensus 2 ~l~~~L-~~~~s~d~~~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~ 71 (462)
T 1ibr_B 2 ELITIL-EKTVSPDRLELEAAQKFLERAAVEN---------LPTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPD 71 (462)
T ss_dssp CHHHHH-HHTTCSCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred cHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHcCCCChHHHHHHHHHHHHhccccchH
Confidence 355677 7788999999999999998854311 123577888888544 36789999999999987542111
Q ss_pred HH-----------HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCC-CHHH
Q psy12605 124 TQ-----------EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDI-PISF 190 (845)
Q Consensus 124 ~~-----------~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~ 190 (845)
.. .-.....-..|+..|.++++.+ ..++.+++.++... +.. .-.+.++.++..+.++. +..+
T Consensus 72 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~ 146 (462)
T 1ibr_B 72 IKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHM 146 (462)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHH
T ss_pred HHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHH
Confidence 00 0011123456788888888888 99999999998542 110 01246788888887763 4578
Q ss_pred HHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC--CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 191 LRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH--DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
+..++.+|..+++...+.........+++.+...+.++ ++. ++..|++++..+
T Consensus 147 r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~-------------------------vr~~a~~~l~~~ 201 (462)
T 1ibr_B 147 KESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNN-------------------------VKLAATNALLNS 201 (462)
T ss_dssp HHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHH-------------------------HHHHHHHHHHHH
Confidence 99999999999985422222233456888888888876 555 788888888876
Q ss_pred hcCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHH
Q psy12605 269 TDGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVW 347 (845)
Q Consensus 269 ~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~ 347 (845)
...-.+... .....-+++.+...+.++++.++..++++|..++..........+..++++.++..+.+.++.++..++.
T Consensus 202 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~ 281 (462)
T 1ibr_B 202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIE 281 (462)
T ss_dssp TTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 543221110 0001113556666778888999999999999998654332111122156677777778889999999999
Q ss_pred HHHHhhcCChHHH-----------------HHHHh---cCChHHHHHHhhhccc--ccCChhHHHHHHHHHHHHhcCChH
Q psy12605 348 FLSNITAGNQAQV-----------------QAVID---AGLLPKIIANLQKVGR--IVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 348 ~L~nl~~~~~~~~-----------------~~l~~---~~~i~~Lv~lL~~~~~--~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
++..++....... ..+++ ..++|.+++.+...+. .++++.++..|+.+|..++...++
T Consensus 282 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~ 361 (462)
T 1ibr_B 282 FWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED 361 (462)
T ss_dssp HHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH
Confidence 9988864321100 00111 2356667777754311 113568999999999999864432
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-H-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-Q-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
. +. ...++.+...+.+++..+|..|+.+|+.++.... . ....+ ..+++.++..+.+.. ..++..++|++++
T Consensus 362 ~---~~-~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~l--~~~~~~l~~~l~d~~-~~Vr~~a~~~l~~ 434 (462)
T 1ibr_B 362 D---IV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPLV--IQAMPTLIELMKDPS-VVVRDTAAWTVGR 434 (462)
T ss_dssp T---HH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTTT--TTHHHHHHHGGGCSC-HHHHHHHHHHHHH
T ss_pred H---HH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHHH--HHHHHHHHHHhcCCC-HHHHHHHHHHHHH
Confidence 1 11 2456778888999999999999999999997432 1 11111 457788888887544 6889999999999
Q ss_pred hhcCCCCCC-ChhHHHhHHHHHH
Q psy12605 484 LCRNKDPPP-SMSTIIELLPALN 505 (845)
Q Consensus 484 L~~~~~~~~-~~~~~~~~l~~l~ 505 (845)
++....+.. ....+...++.+.
T Consensus 435 ~~~~~~~~~~~~~~l~~ll~~Ll 457 (462)
T 1ibr_B 435 ICELLPEAAINDVYLAPLLQCLI 457 (462)
T ss_dssp HHHHGGGGCCSTTTHHHHHHHHH
T ss_pred HHHhcccccccHHHHHHHHHHHH
Confidence 998653211 1234444555444
|
| >1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-12 Score=136.01 Aligned_cols=257 Identities=13% Similarity=0.058 Sum_probs=198.7
Q ss_pred HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC
Q psy12605 128 VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 207 (845)
Q Consensus 128 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 207 (845)
.+.+.++.|++.|.++++.++..|+++|+++.. + +.++.|+.++.++ +..++..|+++|..+.....
T Consensus 20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~--~---------~~~~~L~~~l~d~-~~~vR~~A~~aL~~l~~~~~- 86 (280)
T 1oyz_A 20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKK- 86 (280)
T ss_dssp HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTT-
T ss_pred HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC--c---------hHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccc-
Confidence 345789999999999999999999999999972 2 2478888889876 55899999999999864321
Q ss_pred CCChhHHhhHHHHHHh-hcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchh
Q psy12605 208 PPSMSTIIELLPALNI-LIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVP 286 (845)
Q Consensus 208 ~~~~~~~~~~l~~L~~-ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 286 (845)
.....++.|.. ++.++++. ++..++++|..+....... ...+++
T Consensus 87 -----~~~~l~~~L~~~~~~d~~~~-------------------------vr~~a~~aL~~l~~~~~~~-----~~~~~~ 131 (280)
T 1oyz_A 87 -----CEDNVFNILNNMALNDKSAC-------------------------VRATAIESTAQRCKKNPIY-----SPKIVE 131 (280)
T ss_dssp -----THHHHHHHHHHHHHHCSCHH-------------------------HHHHHHHHHHHHHHHCGGG-----HHHHHH
T ss_pred -----cchHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHHHHhccCCcc-----cHHHHH
Confidence 12345556653 45667777 8999999999886433221 224578
Q ss_pred hHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhc
Q psy12605 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDA 366 (845)
Q Consensus 287 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~ 366 (845)
.|+.++.++++.++..|+.+|+++.. ..+++.|+.++.++++.+|..|+++|+.+....+
T Consensus 132 ~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~--------- 191 (280)
T 1oyz_A 132 QSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS--------- 191 (280)
T ss_dssp HHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------
T ss_pred HHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------
Confidence 89999999999999999999998742 2478999999999999999999999999854333
Q ss_pred CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 367 GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 367 ~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
..++.|+..+.+ .++.++..|+++|+.+.. ...++.|+.++.+++ ++..++++|+.+...
T Consensus 192 ~~~~~L~~~l~d-----~~~~vR~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~-- 251 (280)
T 1oyz_A 192 DIRDCFVEMLQD-----KNEEVRIEAIIGLSYRKD-----------KRVLSVLCDELKKNT--VYDDIIEAAGELGDK-- 251 (280)
T ss_dssp HHHHHHHHHTTC-----SCHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--
T ss_pred HHHHHHHHHhcC-----CCHHHHHHHHHHHHHhCC-----------HhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--
Confidence 246788888876 479999999999999862 357889999998754 899999999998642
Q ss_pred HHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHH
Q psy12605 447 QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 481 (845)
Q Consensus 447 ~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l 481 (845)
..++.|..++.+..+.++...+...+
T Consensus 252 ---------~~~~~L~~~l~~~~~~~~~~~~~~~l 277 (280)
T 1oyz_A 252 ---------TLLPVLDTMLYKFDDNEIITSAIDKL 277 (280)
T ss_dssp ---------GGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred ---------hhhHHHHHHHhcCCCcHHHHHHHHHh
Confidence 45788888887766666666665554
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.42 E-value=4.5e-10 Score=129.80 Aligned_cols=362 Identities=11% Similarity=0.076 Sum_probs=244.4
Q ss_pred HHHHHHHHHcC---CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh
Q psy12605 46 LDMLVVEAARK---DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA 122 (845)
Q Consensus 46 i~~lv~~~l~~---~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~ 122 (845)
+.++- +.+++ .++..+..++..+-++...+.+. +.+.+..++++ .+++...|+.+.-.+..++..+++
T Consensus 37 ~~~ir-~~~~~~~~~~~~~k~~~l~Kli~l~~~G~d~-------s~~~~~vvkl~-~s~~~~~Krl~YL~l~~~~~~~~e 107 (621)
T 2vgl_A 37 LANIR-SKFKGDKALDGYSKKKYVCKLLFIFLLGHDI-------DFGHMEAVNLL-SSNRYTEKQIGYLFISVLVNSNSE 107 (621)
T ss_dssp HHHHH-HHHHSSSCCCHHHHHHHHHHHHHHHHHSCCC-------CSCHHHHHHGG-GCSCHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHH-HHHhcCCCCCHHHHHHHHHHHHHHHHcCCCC-------chhHHHHHHHh-cCCCHHHHHHHHHHHHHHccCCcH
Confidence 44443 66664 36777778887777776555432 24677888998 577889999999999999987665
Q ss_pred hHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhh--cCCCCHHHHHHHHHHHHH
Q psy12605 123 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI--KPDIPISFLRNVTWVIVN 200 (845)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll--~~~~~~~~~~~a~~~L~~ 200 (845)
.... ++..+.+-|+++++.++-.|+++|+++.. ++..+. .++.+.+++ .+. +..+|..|+.++..
T Consensus 108 ~~~L-----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~~-----l~~~v~~~l~~~d~-~~~VRK~A~~al~k 174 (621)
T 2vgl_A 108 LIRL-----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAEA-----FAGEIPKILVAGDT-MDSVKQSAALCLLR 174 (621)
T ss_dssp HHHH-----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHHH-----HTTHHHHHHHCSSS-CHHHHHHHHHHHHH
T ss_pred HHHH-----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHHH-----HHHHHHHHHhCCCC-CHHHHHHHHHHHHH
Confidence 5433 56788888999999999999999999963 443333 467888888 554 56899999999999
Q ss_pred hhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHH
Q psy12605 201 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVI 280 (845)
Q Consensus 201 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 280 (845)
+.+..+.... ..+.++.+..++.+.|+. ++..|+.++..++..+++...
T Consensus 175 l~~~~p~~~~---~~~~~~~l~~lL~d~d~~-------------------------V~~~a~~~l~~i~~~~~~~~~--- 223 (621)
T 2vgl_A 175 LYRTSPDLVP---MGDWTSRVVHLLNDQHLG-------------------------VVTAATSLITTLAQKNPEEFK--- 223 (621)
T ss_dssp HHHHCGGGCC---CCSCHHHHHHHTTCSCHH-------------------------HHHHHHHHHHHHHHHCHHHHT---
T ss_pred HHHhChhhcC---chhHHHHHHHHhCCCCcc-------------------------HHHHHHHHHHHHHHhChHHHH---
Confidence 9985421111 137889999999888887 888899888888765543211
Q ss_pred hcCchhhHHh----hccC-------------CchhhHHHHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhc-------
Q psy12605 281 DSGVVPSLIP----LLSH-------------KEVKVQTASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLT------- 335 (845)
Q Consensus 281 ~~g~i~~Lv~----lL~~-------------~~~~v~~~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~------- 335 (845)
..++.++. ++.. +++-.+...++.|+.++..+ +.....+.+ .+..++..+.
T Consensus 224 --~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~ 299 (621)
T 2vgl_A 224 --TSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKK 299 (621)
T ss_dssp --THHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSS
T ss_pred --HHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCccccc
Confidence 23333333 3321 15778999999999887543 344443332 3333333221
Q ss_pred --CCc--hhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHH
Q psy12605 336 --HPK--EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVV 411 (845)
Q Consensus 336 --~~~--~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~ 411 (845)
+.+ ..+..+|..++..+. ..++... .++..|..++.+ .++++|..+..++..++...+.. . ++
T Consensus 300 l~~~n~~~aVl~ea~~~i~~l~-~~~~~~~-----~~~~~L~~~L~~-----~~~niry~aL~~l~~l~~~~~~~-~-~~ 366 (621)
T 2vgl_A 300 VQHSNAKNAVLFEAISLIIHHD-SEPNLLV-----RACNQLGQFLQH-----RETNLRYLALESMCTLASSEFSH-E-AV 366 (621)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC-CCHHHHH-----HHHHHHHHHSSC-----SCHHHHHHHHHHHHHHTTCTTTH-H-HH
T ss_pred ccccchHHHHHHHHHHHHHhcC-CcHHHHH-----HHHHHHHHHhcC-----CCcchHHHHHHHHHHHHhccCcH-H-HH
Confidence 112 367778888888874 3333322 245677788765 47899999999999998765421 1 12
Q ss_pred HcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 412 AAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 412 ~~g~i~~Lv~lL~-~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
......++..+. +++..|+..++..|..++..+ +. +. ++..|..++... +.++++.++..++.++.
T Consensus 367 -~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~-Nv-~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~la~ 433 (621)
T 2vgl_A 367 -KTHIETVINALKTERDVSVRQRAVDLLYAMCDRS-NA-QQ-----IVAEMLSYLETA-DYSIREEIVLKVAILAE 433 (621)
T ss_dssp -HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHH-HH-HH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChh-hH-HH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHHHH
Confidence 345677888888 899999999999999998532 22 22 344555666543 45677777777777664
|
| >1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A | Back alignment and structure |
|---|
Probab=99.34 E-value=6.8e-12 Score=141.00 Aligned_cols=355 Identities=14% Similarity=0.138 Sum_probs=231.6
Q ss_pred HHHHHHHcCC--ChHHHHHHHHHHHHHHcCCCCcc----------HHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHH
Q psy12605 48 MLVVEAARKD--NPELQLLAVQSARKLLSSDKNPP----------IEALIHSGILPVLVECLERSDRPNLQFEAAWALTN 115 (845)
Q Consensus 48 ~lv~~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~----------~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~ 115 (845)
.++ ..+.+. ++.+|..|+..|++++....... ...-....+-..|++.|. +.++.+ ..++.++..
T Consensus 39 ~L~-~il~~~~~~~~vR~~a~~~Lk~~i~~~~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~-~~~~~v-~~~~~~i~~ 115 (462)
T 1ibr_B 39 ELS-RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG-TETYRP-SSASQCVAG 115 (462)
T ss_dssp HHH-HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSSS-CSHHHHHHH
T ss_pred HHH-HHHHcCCCChHHHHHHHHHHHHhccccchHHHHHHHhhhhcCCHHHHHHHHHHHHHHhC-CCCchh-hHHHHHHHH
Confidence 344 455553 68899999999999876431000 000012234566788884 556678 889999999
Q ss_pred HhcCChhhHHHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCC-CHHHH
Q psy12605 116 IASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDI-PISFL 191 (845)
Q Consensus 116 la~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~-~~~~~ 191 (845)
++....... .-.+.+|.|+..+.++ ++.+++.|+.+|+.++.+. ++.-.... ...++.++..+.++. +..+|
T Consensus 116 ia~~~~~~~---~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr 191 (462)
T 1ibr_B 116 IACAEIPVN---QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVK 191 (462)
T ss_dssp HHHHHGGGT---CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHhcccc---ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHH
Confidence 986421100 0146889999999988 8999999999999998643 21111111 125677888887764 56899
Q ss_pred HHHHHHHHHhhcCCCCC-CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 192 RNVTWVIVNLCRNKDPP-PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
..|++++.++...-... .........++.+...+.+.+++ ++..+++++..+..
T Consensus 192 ~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-------------------------vr~~~~~~l~~l~~ 246 (462)
T 1ibr_B 192 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR-------------------------VRVAALQNLVKIMS 246 (462)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHH-------------------------HHHHHHHHHHHHHH
Confidence 99999999976432100 01111123466676667666776 88899999998876
Q ss_pred CChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhH-----------------HHHhc---CCccchh
Q psy12605 271 GGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT-----------------QVILN---CDALSHF 330 (845)
Q Consensus 271 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~-----------------~~i~~---~~~l~~L 330 (845)
...+........++++.++..+.+.++.++..|+.++.+++....... ..+.+ ..++|.+
T Consensus 247 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l 326 (462)
T 1ibr_B 247 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 326 (462)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHH
Confidence 554432222222667777777788889999999999999875320000 00000 1345666
Q ss_pred hHhhcCC-------chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 331 PALLTHP-------KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 331 ~~lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
+..+... +..+|..|+.+|..++....+ .+. ..+++.+...+.+ .++.+|..|+.+++.++.+.
T Consensus 327 ~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~---~~~-~~~~~~l~~~l~~-----~~~~~r~aal~~l~~l~~~~ 397 (462)
T 1ibr_B 327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED---DIV-PHVLPFIKEHIKN-----PDWRYRDAAVMAFGCILEGP 397 (462)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT---THH-HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTSSSS
T ss_pred HHHHHhcccccccccchHHHHHHHHHHHHHHhccH---HHH-HHHHHHHHHHhcC-----CChHHHHHHHHHHHHHhcCC
Confidence 6666432 347899999999998654332 111 2345556666654 48999999999999999765
Q ss_pred h-HhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 404 S-AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 404 ~-~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
. +..... -...++.++..+.++++.||..|+|+|++++..
T Consensus 398 ~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~ 438 (462)
T 1ibr_B 398 EPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL 438 (462)
T ss_dssp CTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHh
Confidence 3 211111 145788999999999999999999999999863
|
| >2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A | Back alignment and structure |
|---|
Probab=99.21 E-value=1.3e-08 Score=117.72 Aligned_cols=387 Identities=12% Similarity=0.136 Sum_probs=262.7
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
....+.+ +++.+++...+.-+..++..+...+ + +.++- ++..+.+=| .++++.+|..|+.+|+++.. ++.
T Consensus 74 ~~~~~vv-kl~~s~~~~~Krl~YL~l~~~~~~~--~--e~~~L--~iN~l~kDl-~~~n~~ir~lALr~L~~i~~--~e~ 143 (621)
T 2vgl_A 74 FGHMEAV-NLLSSNRYTEKQIGYLFISVLVNSN--S--ELIRL--INNAIKNDL-ASRNPTFMGLALHCIANVGS--REM 143 (621)
T ss_dssp SCHHHHH-HGGGCSCHHHHHHHHHHHHHSCCCC--H--HHHHH--HHHHHHHHH-HSCCHHHHHHHHHHHHHHCC--HHH
T ss_pred hhHHHHH-HHhcCCCHHHHHHHHHHHHHHccCC--c--HHHHH--HHHHHHHhc-CCCCHHHHHHHHHHhhccCC--HHH
Confidence 3467888 7899999998888888887765433 1 21111 356666677 36889999999999999963 553
Q ss_pred HHHHHHcCChHHHHHhh--CCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHh
Q psy12605 124 TQEVVAAGAVPLFLRLL--MSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNL 201 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l 201 (845)
.. ..+|.+.++| .+.++.+|..|+.++.++...+|+.. ...+.++.+.++|.+. +..++.+|+.++..+
T Consensus 144 ~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~---~~~~~~~~l~~lL~d~-d~~V~~~a~~~l~~i 214 (621)
T 2vgl_A 144 AE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV---PMGDWTSRVVHLLNDQ-HLGVVTAATSLITTL 214 (621)
T ss_dssp HH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC---CCCSCHHHHHHHTTCS-CHHHHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc---CchhHHHHHHHHhCCC-CccHHHHHHHHHHHH
Confidence 33 3678999999 88999999999999999987665432 2247889999999755 558999999999999
Q ss_pred hcCCCCCCChhHHhhHHHHHH----hhcccC-------------CchhhHHHHHHHhhh----ChhhHHhh-------h-
Q psy12605 202 CRNKDPPPSMSTIIELLPALN----ILIHHH-------------DTSVSIYLWLSIIEK----NPQISKIL-------V- 252 (845)
Q Consensus 202 ~~~~~~~~~~~~~~~~l~~L~----~ll~~~-------------~~~~~~~~~~~l~~~----~~~~~~~~-------~- 252 (845)
+.... ......+|.++ +++... ++..++..++.+... +|.....+ .
T Consensus 215 ~~~~~-----~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~~L~~il~ 289 (621)
T 2vgl_A 215 AQKNP-----EEFKTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILN 289 (621)
T ss_dssp HHHCH-----HHHTTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHHHHHHHHH
T ss_pred HHhCh-----HHHHHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 97552 11223444444 333221 566777777554332 23322211 0
Q ss_pred -------------hh--HHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh
Q psy12605 253 -------------SK--MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ 317 (845)
Q Consensus 253 -------------~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 317 (845)
.+ ..+...++.++.++.. ..+..+ .++..|..+|.++++.++..|+.+|..++...+.
T Consensus 290 ~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~-~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~- 362 (621)
T 2vgl_A 290 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDS-EPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFS- 362 (621)
T ss_dssp HHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCC-CHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-
T ss_pred hhccCcccccccccchHHHHHHHHHHHHHhcCC-cHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-
Confidence 01 1455666677766652 222222 3467788899888999999999999999876532
Q ss_pred HHHHhcCCccchhhHhhc-CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHH
Q psy12605 318 TQVILNCDALSHFPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL 396 (845)
Q Consensus 318 ~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L 396 (845)
...+. ...+.++.++. ++|..+|..++.+|..++. +...+. ++..|...+... +.+.+..+..++
T Consensus 363 ~~~~~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~-----d~~~~~~~v~~I 428 (621)
T 2vgl_A 363 HEAVK--THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETA-----DYSIREEIVLKV 428 (621)
T ss_dssp HHHHH--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHC-----CHHHHHHHHHHH
T ss_pred HHHHH--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhc-----CHHHHHHHHHHH
Confidence 12222 34567888888 8999999999999999853 333333 455677777763 789999999999
Q ss_pred HHHhcCC-hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCC-ChhHH
Q psy12605 397 TNIASGT-SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-PISFL 474 (845)
Q Consensus 397 ~~l~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~-~~~~~ 474 (845)
+.++... +.. .-.+..|++++......+...+...+..+....++.+... +..|+..+.... ...+.
T Consensus 429 ~~la~k~~~~~------~~~v~~Ll~ll~~~~~~v~~ev~~~l~~ii~~~~~~~~~~-----~~~l~~~l~~~~~~~~li 497 (621)
T 2vgl_A 429 AILAEKYAVDY------TWYVDTILNLIRIAGDYVSEEVWYRVIQIVINRDDVQGYA-----AKTVFEALQAPACHENLV 497 (621)
T ss_dssp HHHHHHHCSST------HHHHHHHHHHHHHHGGGSCSHHHHHHHHHHGGGCSCHHHH-----HHHHHHHHTSSSCCHHHH
T ss_pred HHHHHhcCCcH------HHHHHHHHHHHHhhcccchHHHHHHHHHHHhCChhHHHHH-----HHHHHHHHcCccchHHHH
Confidence 9887421 111 1246677888876666666667777777776666666553 456677776443 35777
Q ss_pred HHHHHHHHHhhc
Q psy12605 475 RNVTWVIVNLCR 486 (845)
Q Consensus 475 ~~~~~~l~nL~~ 486 (845)
+.++|+++..+.
T Consensus 498 ~~~~wilGEy~~ 509 (621)
T 2vgl_A 498 KVGGYILGEFGN 509 (621)
T ss_dssp HHHHHHHHHHTH
T ss_pred HHHHHHhcchHH
Confidence 888999998865
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.20 E-value=3.4e-10 Score=112.34 Aligned_cols=188 Identities=21% Similarity=0.197 Sum_probs=155.2
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.+.++.|+++|+ ++++.+|..|+..|..+.. .++++.|+++|.++++.++..|+++|+.+...
T Consensus 18 ~~~~~~L~~~L~-~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~----- 80 (211)
T 3ltm_A 18 PEKVEMYIKNLQ-DDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE----- 80 (211)
T ss_dssp GGGHHHHHHHTT-CSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCG-----
T ss_pred HhHHHHHHHHHc-CCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-----
Confidence 456999999995 7889999999999999864 25899999999999999999999999999632
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
+.++.|+.++.++ +..++..++++|..+.. ...++.|..++.++++.
T Consensus 81 ------~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~--------------- 127 (211)
T 3ltm_A 81 ------RAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWF--------------- 127 (211)
T ss_dssp ------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHH---------------
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHH---------------
Confidence 3578888888776 55899999999998853 35788999999988888
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~ 326 (845)
++..++++|..+.. ...++.|..++.++++.++..|+.+|+.+.. ..+
T Consensus 128 ----------vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~ 175 (211)
T 3ltm_A 128 ----------VRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERV 175 (211)
T ss_dssp ----------HHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHH
T ss_pred ----------HHHHHHHHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhH
Confidence 89999999988742 3467889999999999999999999999832 135
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCC
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGN 356 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~ 356 (845)
++.|..++.++++.+|..|..+|.++....
T Consensus 176 ~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 176 RAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 678889999999999999999999985543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.19 E-value=5.8e-10 Score=109.67 Aligned_cols=184 Identities=21% Similarity=0.212 Sum_probs=155.1
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
.+..+.++++| .++++.+|..|+++|..+.. .+.++.|+++|.++++.++..|+++|+.+...
T Consensus 13 ~~~~~~~i~~L-~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~~----- 75 (201)
T 3ltj_A 13 PEKVEMYIKNL-QDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGDE----- 75 (201)
T ss_dssp HHHHHHHHHHT-TCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----
T ss_pred CcchHHHHHHh-cCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCCH-----
Confidence 34688999999 57889999999999999864 24789999999999999999999999998632
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
..++.|+.++.++ +..++..|+++|.++.. ...++.|..++.++++.
T Consensus 76 ------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~--------------- 122 (201)
T 3ltj_A 76 ------RAVEPLIKALKDE-DGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDEDWF--------------- 122 (201)
T ss_dssp ------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHH---------------
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCCCHH---------------
Confidence 3578888888876 56899999999998753 24788899999888888
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~ 326 (845)
++..++++|..+.. ...++.|..++.++++.++..|+.+|+.+. .+ .+
T Consensus 123 ----------vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~--~~---------~~ 170 (201)
T 3ltj_A 123 ----------VRIAAAFALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIG--GE---------RV 170 (201)
T ss_dssp ----------HHHHHHHHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHC--SH---------HH
T ss_pred ----------HHHHHHHHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--ch---------hH
Confidence 89999999987742 356788999999999999999999999982 11 35
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNI 352 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl 352 (845)
++.|..++.++++.+|..|..+|.++
T Consensus 171 ~~~L~~~l~d~~~~vr~~A~~aL~~l 196 (201)
T 3ltj_A 171 RAAMEKLAETGTGFARKVAVNYLETH 196 (201)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 67888899889999999999999987
|
| >3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.7e-10 Score=109.35 Aligned_cols=187 Identities=16% Similarity=0.138 Sum_probs=152.7
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
..++.++ +.+.++++.++..|+..|..+.. .+.++.|+++|+ ++++.+|..|+++|..+..
T Consensus 19 ~~~~~L~-~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~~L~~~l~-~~~~~vr~~a~~aL~~~~~----- 79 (211)
T 3ltm_A 19 EKVEMYI-KNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKALK-DEDAWVRRAAADALGQIGD----- 79 (211)
T ss_dssp GGHHHHH-HHTTCSSHHHHHHHHHHHHHHCC------------GGGHHHHHHHTT-CSCHHHHHHHHHHHHHHCC-----
T ss_pred hHHHHHH-HHHcCCCHHHHHHHHHHHHHhCC------------ccHHHHHHHHHc-CCCHHHHHHHHHHHHhhCC-----
Confidence 4577888 89999999999999999987632 236899999995 6789999999999999863
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
.+.++.|+++|.++++.++..|+++|+.+... +.++.|+.++.++ +..++..|+++|.++..
T Consensus 80 ------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~ 141 (211)
T 3ltm_A 80 ------ERAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDE-DWFVRIAAAFALGEIGD 141 (211)
T ss_dssp ------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC
T ss_pred ------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHhCC-CHHHHHHHHHHHHHcCC
Confidence 24789999999999999999999999999632 3578888888766 56899999999999842
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
...++.|..++.++++. ++..++++|..+.. ..
T Consensus 142 -----------~~~~~~L~~~l~d~~~~-------------------------vr~~a~~aL~~~~~-----------~~ 174 (211)
T 3ltm_A 142 -----------ERAVEPLIKALKDEDGW-------------------------VRQSAADALGEIGG-----------ER 174 (211)
T ss_dssp -----------GGGHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHCS-----------HH
T ss_pred -----------HHHHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHhCc-----------hh
Confidence 25788999999888888 89999999988742 24
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCC
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~ 314 (845)
.++.|..++.++++.++..|..+|+++....
T Consensus 175 ~~~~L~~~l~d~~~~vr~~A~~aL~~~~~~~ 205 (211)
T 3ltm_A 175 VRAAMEKLAETGTGFARKVAVNYLETHKSFN 205 (211)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhcCCCC
Confidence 5677888888899999999999999987543
|
| >3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-09 Score=107.43 Aligned_cols=184 Identities=16% Similarity=0.147 Sum_probs=153.0
Q ss_pred hcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 44 VNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 44 ~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
...+.++ +.|.++++.++..|+..|..+.. .+.++.|+++| .++++.+|..|+++|..+...
T Consensus 14 ~~~~~~i-~~L~~~~~~vr~~A~~~L~~~~~------------~~~~~~L~~~l-~~~~~~vr~~a~~~L~~~~~~---- 75 (201)
T 3ltj_A 14 EKVEMYI-KNLQDDSYYVRRAAAYALGKIGD------------ERAVEPLIKAL-KDEDAWVRRAAADALGQIGDE---- 75 (201)
T ss_dssp HHHHHHH-HHTTCSCHHHHHHHHHHHHHHCC------------GGGHHHHHHHT-TCSSHHHHHHHHHHHHHHCCG----
T ss_pred cchHHHH-HHhcCCCHHHHHHHHHHHHhcCC------------hhHHHHHHHHH-cCCCHHHHHHHHHHHHhhCCH----
Confidence 4567788 89999999999999999987632 13589999999 477899999999999998532
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
++++.|+.+|.++++.++..|+++|+.+... ..++.|+.++.++ +..++..|+++|..+..
T Consensus 76 -------~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~-----------~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~ 136 (201)
T 3ltj_A 76 -------RAVEPLIKALKDEDGWVRQSAAVALGQIGDE-----------RAVEPLIKALKDE-DWFVRIAAAFALGEIGD 136 (201)
T ss_dssp -------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG-----------GGHHHHHHHTTCS-SHHHHHHHHHHHHHHTC
T ss_pred -------HHHHHHHHHHcCCCHHHHHHHHHHHHHhCcH-----------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCC
Confidence 4789999999999999999999999998632 2578888888766 56899999999999852
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
...++.|..++.++++. ++..++++|..+.. ..
T Consensus 137 -----------~~~~~~L~~~l~d~~~~-------------------------vr~~A~~aL~~~~~-----------~~ 169 (201)
T 3ltj_A 137 -----------ERAVEPLIKALKDEDGW-------------------------VRQSAADALGEIGG-----------ER 169 (201)
T ss_dssp -----------GGGHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHCS-----------HH
T ss_pred -----------HHHHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHhCc-----------hh
Confidence 35788999999988888 89999999988732 23
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHh
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIV 311 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~ 311 (845)
.++.|..++.++++.++..|..+|+.+-
T Consensus 170 ~~~~L~~~l~d~~~~vr~~A~~aL~~l~ 197 (201)
T 3ltj_A 170 VRAAMEKLAETGTGFARKVAVNYLETHK 197 (201)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 5677888888899999999999999873
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.97 E-value=1e-08 Score=120.05 Aligned_cols=217 Identities=13% Similarity=0.096 Sum_probs=156.5
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHH-HhhCCCChhHHHHHHHHHHHhcCC-Chh
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL-RLLMSPHSNVCEQAVWALGNIIGD-GPQ 164 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~-~lL~s~~~~v~~~a~~~L~nla~~-~~~ 164 (845)
..+.| +++.| .+.++..|..|+++|++|+. +++.++.+...|+|..++ .+|.+++.++++.|+++|+||+.+ .++
T Consensus 34 ~~i~P-ll~~L-~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d 110 (684)
T 4gmo_A 34 DKILP-VLKDL-KSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEAD 110 (684)
T ss_dssp HTTHH-HHHHH-SSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHH
T ss_pred hhHHH-HHHHc-CCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCch
Confidence 34555 56778 46788999999999999996 588888888889988765 578899999999999999999965 478
Q ss_pred hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhC
Q psy12605 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKN 244 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~ 244 (845)
.+..++..|++++|..+++.. ...+........ .........+
T Consensus 111 ~~~~l~~~~il~~L~~~l~~~---------~~~~~~~~~~~~--~~~~~~~~~~-------------------------- 153 (684)
T 4gmo_A 111 FCVHLYRLDVLTAIEHAAKAV---------LETLTTSEPPFS--KLLKAQQRLV-------------------------- 153 (684)
T ss_dssp HHHHHHHTTHHHHHHHHHHHH---------HHHHHCBTTBGG--GSCHHHHHHH--------------------------
T ss_pred HHHHHHHcChHHHHHHHHHhh---------HHHHhhhccccc--cccHHHHHHH--------------------------
Confidence 889999999999999887532 111111110000 0000000000
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC---CchhhHHHHHHHHHHHhcCChhhHHHH
Q psy12605 245 PQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH---KEVKVQTASLRAVGNIVTGTDEQTQVI 321 (845)
Q Consensus 245 ~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~---~~~~v~~~al~~L~nl~~~~~~~~~~i 321 (845)
..+...++.+|.+|+..+.+....+...+.++.++.+|.+ ...+++..|+.+|.+++.+++...+.+
T Consensus 154 ----------~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i 223 (684)
T 4gmo_A 154 ----------WDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAI 223 (684)
T ss_dssp ----------HHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHH
Confidence 0144566777888888888877788888999999999843 346799999999999999999888888
Q ss_pred hcCCccchhhHhh--cCCchhhHHHHHHHHHHhh
Q psy12605 322 LNCDALSHFPALL--THPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 322 ~~~~~l~~L~~lL--~~~~~~~~~~a~~~L~nl~ 353 (845)
.+.+....+..++ ...+...+..++++|.|+.
T Consensus 224 ~~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~ 257 (684)
T 4gmo_A 224 TDDQETHVYDVLLKLATGTDPRAVMACGVLHNVF 257 (684)
T ss_dssp HTCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred HhcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence 8876554433333 2334456788899999974
|
| >4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.6e-08 Score=118.45 Aligned_cols=200 Identities=13% Similarity=0.070 Sum_probs=156.3
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchh-hHhhcCCchhhHHHHHHHHHHhhcC-ChHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF-PALLTHPKEKICKEAVWFLSNITAG-NQAQVQ 361 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L-~~lL~~~~~~~~~~a~~~L~nl~~~-~~~~~~ 361 (845)
-+.++++.|+++++..|..|+.+|++++. ++..++.+...+++..+ ..+|.+.+.++|.+|+++|+||+.. .++.+.
T Consensus 35 ~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~~ 113 (684)
T 4gmo_A 35 KILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFCV 113 (684)
T ss_dssp TTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred hHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHHH
Confidence 35567788999999999999999999996 46667778888887765 5678999999999999999999875 478888
Q ss_pred HHHhcCChHHHHHHhhhcccc---------cCC-------hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 362 AVIDAGLLPKIIANLQKVGRI---------VLR-------PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 362 ~l~~~~~i~~Lv~lL~~~~~~---------~~~-------~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
.+++.|+++.|..++...... ... +.+...++.+|.+++.++.+....+...++++.|+..|.+
T Consensus 114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~~ 193 (684)
T 4gmo_A 114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLIS 193 (684)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHHh
Confidence 899999999999998653110 001 1244567889999999888888889999999999998853
Q ss_pred ---CCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc---CCCCChhHHHHHHHHHHHhhc
Q psy12605 426 ---PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI---KPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 426 ---~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll---~~~~~~~~~~~~~~~l~nL~~ 486 (845)
...+++..|+.+|..++.+++...+.+.+.|....+..++ +... ..+..+++.+.|+..
T Consensus 194 ~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~~ 258 (684)
T 4gmo_A 194 ADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVFT 258 (684)
T ss_dssp HCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHhh
Confidence 3468999999999999999999999998887654333332 2322 345677888888754
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.70 E-value=2.9e-05 Score=95.07 Aligned_cols=428 Identities=13% Similarity=0.055 Sum_probs=224.5
Q ss_pred HHHHHHHcC--CChHHHHHHHHHHHHHHcCCCC---------ccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHH
Q psy12605 48 MLVVEAARK--DNPELQLLAVQSARKLLSSDKN---------PPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNI 116 (845)
Q Consensus 48 ~lv~~~l~~--~~~~~~~~a~~~l~~ll~~~~~---------~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~l 116 (845)
.++ ..+.+ .+..+|..|+..|++.+...-. +.....+. ..|++.+..+ .+.+|..++.+++.+
T Consensus 39 ~L~-~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~~~~~~l~~~~k~~ik----~~ll~~l~~~-~~~ir~~l~~~ia~i 112 (960)
T 1wa5_C 39 TLL-HVIASTNLPLSTRLAGALFFKNFIKRKWVDENGNHLLPANNVELIK----KEIVPLMISL-PNNLQVQIGEAISSI 112 (960)
T ss_dssp HHH-HHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSSCBSSCHHHHHHHH----HHHHHHHHHS-CHHHHHHHHHHHHHH
T ss_pred HHH-HHHhcCCCCHHHHHHHHHHHHHHHHhcCCCcccCCCCCHHHHHHHH----HHHHHHHHhC-CHHHHHHHHHHHHHH
Confidence 344 45533 3678899999999998763210 11122223 3345555333 478999999999999
Q ss_pred hcCC-hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC------hhhHHHHH--hcCChhhHHhh------
Q psy12605 117 ASGT-SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG------PQLRDYVI--NMGVVPPLLSF------ 181 (845)
Q Consensus 117 a~~~-~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~------~~~r~~i~--~~g~i~~Lv~l------ 181 (845)
+..+ ++.- .+.++.|++++++++...+..++.+|..++... ++.+..+. -....+.++.+
T Consensus 113 a~~d~p~~W-----p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~ 187 (960)
T 1wa5_C 113 ADSDFPDRW-----PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDE 187 (960)
T ss_dssp HHHHSTTTC-----TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhCccch-----hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8631 1100 357889999999988899999999999998632 22222221 01123333332
Q ss_pred -hcCCCC--------HHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhh
Q psy12605 182 -IKPDIP--------ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILV 252 (845)
Q Consensus 182 -l~~~~~--------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~ 252 (845)
++.+.. ..+...++.++..+....-+..........++.+.+++....+.. ..+|.. ....
T Consensus 188 ~l~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~---------~~d~d~-~~~~ 257 (960)
T 1wa5_C 188 QITANENNKASLNILFDVLLVLIKLYYDFNCQDIPEFFEDNIQVGMGIFHKYLSYSNPLL---------EDPDET-EHAS 257 (960)
T ss_dssp HTTCCC--CHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHTHHHHHHHHHHHHSCCSCCC---------C-------CCC
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHcCCCCcc---------cCCccc-cccc
Confidence 443321 133344666666665433221111122445566565554321100 000000 0000
Q ss_pred hhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc-----CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 253 SKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS-----HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 253 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-----~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
...+++..++.++..+.....+...... ..+++..+..+. ...+.++..++..+..++... ..+..+.....+
T Consensus 258 ~~~~vk~~~~~~l~~l~~~~~~~f~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l 335 (960)
T 1wa5_C 258 VLIKVKSSIQELVQLYTTRYEDVFGPMI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAM 335 (960)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHH
Confidence 0012666777777776654443332221 234455555553 345678999999999987542 211111111223
Q ss_pred chhh-----Hhhc-----------------------CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhc
Q psy12605 328 SHFP-----ALLT-----------------------HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKV 379 (845)
Q Consensus 328 ~~L~-----~lL~-----------------------~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~ 379 (845)
+.++ ..+. +.....|..|..+|..++....+.. . ..+++.+-+.+...
T Consensus 336 ~~li~~~i~~~m~~~~~d~e~w~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v---~-~~~l~~i~~~l~~~ 411 (960)
T 1wa5_C 336 NNITEQIILPNVTLREEDVELFEDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLV---T-NIFLAHMKGFVDQY 411 (960)
T ss_dssp HHHHHHTHHHHHSCCGGGTTTTTTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHH---H-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhHHhcCCCHHHHHHHhcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcchhH---H-HHHHHHHHHHHHHh
Confidence 3233 2221 0012466777778877765544221 1 11223333333311
Q ss_pred cc-ccCChhHHHHHHHHHHHHhcCCh--H----------hHHHHHHcCChHHHHHhhCCC---CHHHHHHHHHHHHHhhc
Q psy12605 380 GR-IVLRPNLQFEAAWALTNIASGTS--A----------QTQEVVAAGAVPLFLRLLMSP---HSNVCEQAVWALGNIIG 443 (845)
Q Consensus 380 ~~-~~~~~~v~~~a~~~L~~l~~~~~--~----------~~~~l~~~g~i~~Lv~lL~~~---~~~v~~~a~~~L~nl~~ 443 (845)
.. ...++..+..|..+++.++.+.. . ....+. ...++..+.++ ++-+|..|+|+++.++.
T Consensus 412 ~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l----~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~ 487 (960)
T 1wa5_C 412 MSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFF----TKEIAPDLTSNNIPHIILRVDAIKYIYTFRN 487 (960)
T ss_dssp HC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHH----HHHTHHHHHCSSCSCHHHHHHHHHHHHHTGG
T ss_pred ccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHH----HHHhHHHhcCCCCCCceehHHHHHHHHHHHh
Confidence 00 01467888999999999975321 0 111111 11233344556 88999999999999987
Q ss_pred CChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCC------CC----CChhHHHhHHHHHHHhhcCC
Q psy12605 444 DGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD------PP----PSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 444 ~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~------~~----~~~~~~~~~l~~l~~ll~~~ 511 (845)
.-. .+. -..+++.++..+.+. +..++..+++++.+++.... +. .-...+..+++.|..++...
T Consensus 488 ~~~--~~~--l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~ 560 (960)
T 1wa5_C 488 QLT--KAQ--LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKH 560 (960)
T ss_dssp GSC--HHH--HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTT
T ss_pred hCC--HHH--HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhc
Confidence 521 111 123466777777643 46788999999999997532 01 11234455666666776654
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.55 E-value=9.8e-06 Score=94.57 Aligned_cols=274 Identities=15% Similarity=0.135 Sum_probs=188.8
Q ss_pred CHHHHHHhhcc--CCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCC--------hhHHHHHHHHHHHh
Q psy12605 89 ILPVLVECLER--SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPH--------SNVCEQAVWALGNI 158 (845)
Q Consensus 89 ~i~~Lv~lL~~--~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~--------~~v~~~a~~~L~nl 158 (845)
++..|-++|.. ++++.++..|+..|+-+..+..+ .++..|...|.+++ +.++..|+..||.+
T Consensus 393 gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla 464 (963)
T 4ady_A 393 GKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA 464 (963)
T ss_dssp HHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence 46667777732 46778999999999999877432 14677778787655 67888999999998
Q ss_pred cCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCchhhHHHH
Q psy12605 159 IGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTSVSIYLW 237 (845)
Q Consensus 159 a~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~ 237 (845)
...+. ++. +++.|..++..+.. ..+..|+.+|.-+.-+..+ ..++..|++.+.+ .+..
T Consensus 465 ~~GS~--~ee-----v~e~L~~~L~dd~~-~~~~~AalALGli~vGTgn-------~~ai~~LL~~~~e~~~e~------ 523 (963)
T 4ady_A 465 AMGSA--NIE-----VYEALKEVLYNDSA-TSGEAAALGMGLCMLGTGK-------PEAIHDMFTYSQETQHGN------ 523 (963)
T ss_dssp STTCC--CHH-----HHHHHHHHHHTCCH-HHHHHHHHHHHHHHTTCCC-------HHHHHHHHHHHHHCSCHH------
T ss_pred hcCCC--CHH-----HHHHHHHHHhcCCH-HHHHHHHHHHhhhhcccCC-------HHHHHHHHHHHhccCcHH------
Confidence 64432 111 25566777765533 4566777777766444421 2344455444433 3333
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc-CCchhhHHHHHHHHHHHhcCChh
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS-HKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~-~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
++..++.+|+.+.-+..+ .++.+++.|. +.++.++..++-+++--..+...
T Consensus 524 -------------------vrR~aalgLGll~~g~~e---------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn 575 (963)
T 4ady_A 524 -------------------ITRGLAVGLALINYGRQE---------LADDLITKMLASDESLLRYGGAFTIALAYAGTGN 575 (963)
T ss_dssp -------------------HHHHHHHHHHHHTTTCGG---------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC
T ss_pred -------------------HHHHHHHHHHhhhCCChH---------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC
Confidence 777788888877655443 3455666664 56788888888888765554333
Q ss_pred hHHHHhcCCccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHH
Q psy12605 317 QTQVILNCDALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWA 395 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~ 395 (845)
. ..++.|+..+ ++.++.+|..|+..|+.+..+++ ..++.++..+... .++.+|..++++
T Consensus 576 ~-------~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~----~d~~VR~gAalA 635 (963)
T 4ady_A 576 N-------SAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKS----HNAHVRCGTAFA 635 (963)
T ss_dssp H-------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGC----SCHHHHHHHHHH
T ss_pred H-------HHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhc----CCHHHHHHHHHH
Confidence 2 1344445444 56778899999999999876654 3567777777665 489999999999
Q ss_pred HHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 396 LTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 396 L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
|+.++.+++.. .++..|..+..+.+..|+..|+.+|+.+.....
T Consensus 636 LGli~aGn~~~-------~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtn 679 (963)
T 4ady_A 636 LGIACAGKGLQ-------SAIDVLDPLTKDPVDFVRQAAMIALSMILIQQT 679 (963)
T ss_dssp HHHHTSSSCCH-------HHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCC
T ss_pred HHHhccCCCcH-------HHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCc
Confidence 99998876531 246788889999999999999999999987543
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.55 E-value=1.1e-06 Score=92.20 Aligned_cols=312 Identities=10% Similarity=0.084 Sum_probs=178.6
Q ss_pred HHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH
Q psy12605 52 EAARKD--NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA 129 (845)
Q Consensus 52 ~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~ 129 (845)
+.++++ |+.....++..+-++...+.+ ....-...+.+..++++ .+++..+|+..-..+..++...++. +.
T Consensus 32 r~fn~~~~~~~kc~~~l~kll~l~~~G~~--f~~~e~t~lf~~v~kl~-~s~d~~lKrLvYLyl~~~~~~~~e~---iL- 104 (355)
T 3tjz_B 32 RVFNETPINPRKCAHILTKILYLINQGEH--LGTTEATEAFFAMTKLF-QSNDPTLRRMCYLTIKEMSCIAEDV---II- 104 (355)
T ss_dssp GGTTSSSCCHHHHHHHHHHHHHHHHHTCC--CCHHHHHHHHHHHHGGG-GCCCHHHHHHHHHHHHHHTTTSSCG---GG-
T ss_pred HHhcCCCCcHHHHHHHHHHHHHHHHCCCC--CchhHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHhCCCHHHH---HH-
Confidence 345544 666666677777777776643 22222234577888999 5788899999988898888653332 22
Q ss_pred cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 130 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 130 ~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
++..|.+=++++++-+|-.|+++|++|... +.-+. ..+.+.+.+.+. +..++..|+.+...++...+
T Consensus 105 --v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~--~m~~~-----l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~p--- 171 (355)
T 3tjz_B 105 --VTSSLTKDMTGKEDSYRGPAVRALCQITDS--TMLQA-----IERYMKQAIVDK-VPSVSSSALVSSLHLLKCSF--- 171 (355)
T ss_dssp --GHHHHHHHHHSSCHHHHHHHHHHHHHHCCT--TTHHH-----HHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCH---
T ss_pred --HHHHHHhhcCCCcHhHHHHHHHHHhcCCCH--HHHHH-----HHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCH---
Confidence 688899999999999999999999999843 33332 245667777776 45899999999999987552
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
....+.++.+-.++.+.++- ++..|+.+|..+..++.. .+..++
T Consensus 172 --e~v~~~~~~l~~ll~d~n~~-------------------------V~~~Al~lL~ei~~~d~~---------a~~kLv 215 (355)
T 3tjz_B 172 --DVVKRWVNEAQEAASSDNIM-------------------------VQYHALGLLYHVRKNDRL---------AVSKMI 215 (355)
T ss_dssp --HHHHTTHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHHTTCHH---------HHHHHH
T ss_pred --HHHHHHHHHHHHHhcCCCcc-------------------------HHHHHHHHHHHHHhhchH---------HHHHHH
Confidence 23567888888888888877 788888888888765432 223344
Q ss_pred hhccC---CchhhHHHHHHHHHHHhcCC-hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHh
Q psy12605 290 PLLSH---KEVKVQTASLRAVGNIVTGT-DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVID 365 (845)
Q Consensus 290 ~lL~~---~~~~v~~~al~~L~nl~~~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~ 365 (845)
..+.. .++-.+...+++++.+..++ +.. ....++.+..+|++.++.+..+|+.++..+...... . -
T Consensus 216 ~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~-~ 285 (355)
T 3tjz_B 216 SKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----E-L 285 (355)
T ss_dssp HHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCSSHHHHHHHHHHHTC--------------
T ss_pred HHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----H-H
Confidence 44432 24556666677776665544 222 224667788888999999999999999998442211 1 1
Q ss_pred cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHH
Q psy12605 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439 (845)
Q Consensus 366 ~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 439 (845)
..++..|..++.+ .++.+|..|...|..++...++... ..-.-+.+++.+++..+...|+.+|-
T Consensus 286 ~~a~~~L~~fLss-----~d~niryvaLr~L~~l~~~~P~~v~-----~~n~~ie~li~d~n~sI~t~Aittll 349 (355)
T 3tjz_B 286 APAVSVLQLFCSS-----PKAALRYAAVRTLNKVAMKHPSAVT-----ACNLDLENLVTDANRSIATLAITTLL 349 (355)
T ss_dssp --CCCTHHHHHHS-----SSSSSHHHHHHCC-------------------------------------------
T ss_pred HHHHHHHHHHHcC-----CCchHHHHHHHHHHHHHHHCcHHHH-----HHHHHHHHHccCCcHhHHHHHHHHhh
Confidence 2345566666665 3789999999999999887665432 23455778888888888777776664
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.50 E-value=0.00026 Score=86.83 Aligned_cols=222 Identities=14% Similarity=0.066 Sum_probs=126.8
Q ss_pred HHHHHHHH-HcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-----
Q psy12605 46 LDMLVVEA-ARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG----- 119 (845)
Q Consensus 46 i~~lv~~~-l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~----- 119 (845)
+..++ .. ..++|++.+.+|-..|..+-... +..+.+..+|..+.++.+|..|+.+|.+....
T Consensus 26 l~~~l-~~l~~~~~~~~r~~A~~~L~~~~~~p-----------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l 93 (963)
T 2x19_B 26 VEKAL-HQLYYDPNIENKNLAQKWLMQAQVSP-----------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI 93 (963)
T ss_dssp HHHHH-HHHHHCCCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred HHHHH-HHHhcCCCHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence 44555 34 45688999999999988764432 24667788886667889999999999987642
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCC----CCHHHHHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPD----IPISFLRNV 194 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~----~~~~~~~~a 194 (845)
+++.+..+. ...++.+... .++.+.++.+.+.++..|+... ++. =.+.++.++..++.. .+...+..+
T Consensus 94 ~~~~~~~ir-~~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~~-----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~ 166 (963)
T 2x19_B 94 PTDQYESLK-AQLFTQITRF-ASGSKIVLTRLCVALASLALSMMPDA-----WPCAVADMVRLFQAEDSPVDGQGRCLAL 166 (963)
T ss_dssp CGGGHHHHH-HHHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTTT-----STTHHHHHHHHHCC------CHHHHHHH
T ss_pred CHHHHHHHH-HHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCccc-----cchHHHHHHHHHhhhccCCCcHHHHHHH
Confidence 233333333 2345555542 2235789999999999887531 110 014567777777651 133567778
Q ss_pred HHHHHHhhcCCCCCC-----------C-hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHH
Q psy12605 195 TWVIVNLCRNKDPPP-----------S-MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTV 262 (845)
Q Consensus 195 ~~~L~~l~~~~~~~~-----------~-~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~ 262 (845)
..+|..++....... . ......+++.+..++...+... .+...++
T Consensus 167 l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~-----------------------~~~~~~l 223 (963)
T 2x19_B 167 LELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPS-----------------------CVRQKVL 223 (963)
T ss_dssp HHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCH-----------------------HHHHHHH
T ss_pred HHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch-----------------------HHHHHHH
Confidence 888888774210000 0 1112234444444443322110 0344455
Q ss_pred HHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCC
Q psy12605 263 WALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 263 ~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~ 314 (845)
.++........... ....+++.+...+ .+++++..|+.++..+....
T Consensus 224 ~~l~~wi~~~~~~~---~~~~ll~~l~~~l--~~~~~~~~a~~~l~~i~~~~ 270 (963)
T 2x19_B 224 KCFSSWVQLEVPLQ---DCEALIQAAFAAL--QDSELFDSSVEAIVNAISQP 270 (963)
T ss_dssp HHHHHHHTSSCCGG---GTHHHHHHHHHHT--TSTTTHHHHHHHHHHHHTCT
T ss_pred HHHHHHHcCCCCcc---cchHHHHHHHHHh--CCchHHHHHHHHHHHHHccc
Confidence 55532222111110 1233455566666 35779999999999998753
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.8e-05 Score=71.71 Aligned_cols=216 Identities=15% Similarity=0.190 Sum_probs=163.7
Q ss_pred HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCC
Q psy12605 129 AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 208 (845)
Q Consensus 129 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 208 (845)
+...+..++.+|.++-..++.+|+..+.+++..-++..+.+ +..|+-+++.+....+-.....++..+++-.+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P-- 102 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP-- 102 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH--
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH--
Confidence 34578889999999988999999999999998888776654 44566777766667776777888888877442
Q ss_pred CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhH
Q psy12605 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSL 288 (845)
Q Consensus 209 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 288 (845)
....+.+|.+..-..-.|+. ++.+...+|..++..++.... +++.-+
T Consensus 103 ---e~v~~vVp~lfanyrigd~k-------------------------ikIn~~yaLeeIaranP~l~~-----~v~rdi 149 (253)
T 2db0_A 103 ---ELVKSMIPVLFANYRIGDEK-------------------------TKINVSYALEEIAKANPMLMA-----SIVRDF 149 (253)
T ss_dssp ---HHHHHHHHHHHHHSCCCSHH-------------------------HHHHHHHHHHHHHHHCHHHHH-----HHHHHH
T ss_pred ---HHHHhhHHHHHHHHhcCCcc-------------------------ceecHHHHHHHHHHhChHHHH-----HHHHHH
Confidence 45678888888777777888 788888888888877766543 345678
Q ss_pred HhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCC
Q psy12605 289 IPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGL 368 (845)
Q Consensus 289 v~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~ 368 (845)
..++.+++..-+..|+..++.+.... ...+ ...+|.|..+|.+.++-+|..|..+|.+++..++..++.+.
T Consensus 150 ~smltskd~~Dkl~aLnFi~alGen~---~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~---- 220 (253)
T 2db0_A 150 MSMLSSKNREDKLTALNFIEAMGENS---FKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI---- 220 (253)
T ss_dssp HHHTSCSSHHHHHHHHHHHHTCCTTT---HHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH----
T ss_pred HHHhcCCChHHHHHHHHHHHHHhccC---cccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH----
Confidence 88899999888999999999874332 2222 25789999999999999999999999999998888655433
Q ss_pred hHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 369 LPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 369 i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
.-++-+.+ .+..++...-.+|+.++
T Consensus 221 --~kl~e~~D-----~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 221 --KRLEELND-----TSSLVNKTVKEGISRLL 245 (253)
T ss_dssp --HHHHHCCC-----SCHHHHHHHHHHHHHHH
T ss_pred --HHHHHhcC-----cHHHHHHHHHHHHHHHH
Confidence 22333333 35677777777777765
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.44 E-value=2.4e-05 Score=96.13 Aligned_cols=461 Identities=9% Similarity=0.016 Sum_probs=238.3
Q ss_pred HHHc-CCChHHHHHHHHHHHHHHcCCCC---ccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHH
Q psy12605 52 EAAR-KDNPELQLLAVQSARKLLSSDKN---PPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEV 127 (845)
Q Consensus 52 ~~l~-~~~~~~~~~a~~~l~~ll~~~~~---~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i 127 (845)
..+. +.++.++..|+..|++.+...-+ +.....+...+++.+.+.- .+.+.+|...+.+|..++..... .
T Consensus 46 ~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~--~~~~~vr~kl~~~la~i~~~~~p-~--- 119 (971)
T 2x1g_F 46 QLMQLGKSQEVQFFGAITLHSKLMKHWHEVPPENREELKQKILESIVRFA--GGPKIVLNRLCISLGAYIVHMLG-E--- 119 (971)
T ss_dssp HHTCTTSCHHHHHHHHHHHHHHHHHCGGGCCGGGHHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHHHHHTTC-C---
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHccHhhCCHHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHccc-c---
Confidence 4553 56788999999999998764211 1233444555666665553 23578999999999999875321 1
Q ss_pred HHcCChHHHHHhhCCC------ChhHHHHHHHHHHHhcCCC-----hhh----HHHHHhcCChhhHHhhh----cCCCC-
Q psy12605 128 VAAGAVPLFLRLLMSP------HSNVCEQAVWALGNIIGDG-----PQL----RDYVINMGVVPPLLSFI----KPDIP- 187 (845)
Q Consensus 128 ~~~g~i~~L~~lL~s~------~~~v~~~a~~~L~nla~~~-----~~~----r~~i~~~g~i~~Lv~ll----~~~~~- 187 (845)
=.+.++.|+.+++++ ++...+.++.+|..++.+- ..- ++.+.. .++.++.++ .....
T Consensus 120 -Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l~iL~~l~EEi~~~~~~~~r~~~~~~l~~--~~~~vl~ll~~~l~~~~~~ 196 (971)
T 2x1g_F 120 -WPGAIEEVINTFQNQRMPNVSADVQLWIMLEVLTAIPEEAQVIHTSVKRVVLRAEIAK--RVQLVIHTVERYLKLQMNR 196 (971)
T ss_dssp -------HHHHHHHHTC----CHHHHHHHHHHHHHHHHHHHHHCCCSSCHHHHHHHHHT--THHHHHHHHHHHHHHHTTS
T ss_pred -ccHHHHHHHHHHhccccccCCCHHHHHHHHHHHHHhHHHHhccCcHHHHHHHHHHHHH--HHHHHHHHHHHHHhcccCC
Confidence 035788888888775 5678889999999887431 111 222222 345544443 21111
Q ss_pred ------HHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcc----------------cCCchhhHHHHHHHhhhCh
Q psy12605 188 ------ISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH----------------HHDTSVSIYLWLSIIEKNP 245 (845)
Q Consensus 188 ------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~----------------~~~~~~~~~~~~~l~~~~~ 245 (845)
.+++..++.++............ .....++.+.. +. .++++
T Consensus 197 ~~~~~~~~~~~~al~~l~~~~~~~~ip~~--~~~~ll~~l~~-L~~~~~~~~~~~~~~~~~~~~~~-------------- 259 (971)
T 2x1g_F 197 VWDAEAYSNMNRAVKCVGTWIKNIGYTIE--GCVTITAVLLE-VVHKCYWPCIHAGDGCMTADENE-------------- 259 (971)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHSCCCGG--GHHHHHHHHHH-HHHHHHSSSCC---CCCCHHHHH--------------
T ss_pred CCCccchhHHHHHHHHHHHHHhhCCcCcc--ccccHHHHHHh-hhhhhccccccccccccCcCCcH--------------
Confidence 15777888888776652101111 34567776665 41 12233
Q ss_pred hhHHhhhhhHHHHHHHHHHHHHhhcCCh--hhHHHHHhcCchhhHHhh-------ccCCc---hhhHHHHHHHHHHHhcC
Q psy12605 246 QISKILVSKMKILVDTVWALSYLTDGGN--DQIQMVIDSGVVPSLIPL-------LSHKE---VKVQTASLRAVGNIVTG 313 (845)
Q Consensus 246 ~~~~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~i~~Lv~l-------L~~~~---~~v~~~al~~L~nl~~~ 313 (845)
++..|+.++..+..... +....+ . .+++.++.+ +...+ .......++.+..+...
T Consensus 260 -----------~~~~a~~~l~~i~~~~~~~~~~~~~-~-~l~~~~~~~~~~~~~~~~~~d~~~~~~~~~l~~l~~~~~~~ 326 (971)
T 2x1g_F 260 -----------LAESCLKTMVNIIIQPDCHNYPKTA-F-VLIKMFLDSLSEITKTEWKRENDNEDIIVHIYMLFVSSVER 326 (971)
T ss_dssp -----------HHHHHHHHHHHHHHCSGGGGCHHHH-H-HHHHHHHHHHHHHHHHHSSSSCSCSHHHHHHHHHHHHHHHH
T ss_pred -----------HHHHHHHHHHHHHcCccccccHHHH-H-HHHHHHHHhHHHHHHHHhcccccchHHHHHHHHHHHHHHHH
Confidence 77788888887766432 111111 1 122222221 23334 26666667777766532
Q ss_pred Chhh-H-----------HHHhcCCccchhhHhhcC-----CchhhHHHHHHHHHHhhcCC---------hHHH---HHHH
Q psy12605 314 TDEQ-T-----------QVILNCDALSHFPALLTH-----PKEKICKEAVWFLSNITAGN---------QAQV---QAVI 364 (845)
Q Consensus 314 ~~~~-~-----------~~i~~~~~l~~L~~lL~~-----~~~~~~~~a~~~L~nl~~~~---------~~~~---~~l~ 364 (845)
.... . ..+. ..++.++.+..+ .++++...+++.+..++... .... ..++
T Consensus 327 ~~~~~~~~~~~~~~~~~~~l~--~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~~~~~~~~~~~~~~~~ 404 (971)
T 2x1g_F 327 HSTLLLSGITSADPELSILVH--RIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSNDEQKHKCWEYIKPLY 404 (971)
T ss_dssp THHHHHHHHHTCCHHHHHHHH--HHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC-------CHHHHHHHHHH
T ss_pred HHHHHHHHhccCcccccHHHH--HHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence 2111 0 1111 344555555533 47788999999888775310 1111 1111
Q ss_pred hcCChHHHHHHhhhcccc---cCC-------hhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC-----CCHH
Q psy12605 365 DAGLLPKIIANLQKVGRI---VLR-------PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-----PHSN 429 (845)
Q Consensus 365 ~~~~i~~Lv~lL~~~~~~---~~~-------~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~-----~~~~ 429 (845)
..+++.++..+..+.+. ..+ ...|..+..++..++..-++..-..+ .+.+...+.+ .+..
T Consensus 405 -~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~~~~l~~~----~~~l~~~l~~~~~~~~~w~ 479 (971)
T 2x1g_F 405 -AHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLNDYILEIL----AAMLDEAIADLQRHPTHWT 479 (971)
T ss_dssp -HHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCTTHHHHHH----HHHHHHHHHHHHHCTTCCH
T ss_pred -HHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH----HHHHHHHHHhccCCCCcHH
Confidence 23445555555322110 001 13455666666666653331111111 1222223322 5677
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhcc---C-CCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHH
Q psy12605 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI---K-PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALN 505 (845)
Q Consensus 430 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll---~-~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~ 505 (845)
.++.++++++.++....... ...++.++.++ . ++....++..++|+++.++......+ ..+...++.+.
T Consensus 480 ~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~--~~l~~vl~~l~ 552 (971)
T 2x1g_F 480 KLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENP--AYIPPAINLLV 552 (971)
T ss_dssp HHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC------CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHH
Confidence 89999999999987543211 12233333332 2 22355778889999999987643222 45677788887
Q ss_pred HhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccccccccccc
Q psy12605 506 ILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVS 569 (845)
Q Consensus 506 ~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~ 569 (845)
..+. +.|... |+ +..++........- .-..++..+..++.+++.+...+..++.+++.++
T Consensus 553 ~~l~---~~v~~~A~~al~~l~~~~~~~l~p-~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~ 614 (971)
T 2x1g_F 553 RGLN---SSMSAQATLGLKELCRDCQLQLKP-YADPLLNACHASLNTGRMKNSDSVRLMFSIGKLM 614 (971)
T ss_dssp HHHH---SSCHHHHHHHHHHHHHHCHHHHHH-HHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHH
T ss_pred HHhC---hHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHH
Confidence 7663 556554 44 66666432211111 1124555666667665433333444455555543
|
| >2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.1e-05 Score=68.89 Aligned_cols=215 Identities=14% Similarity=0.193 Sum_probs=156.2
Q ss_pred hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCChh
Q psy12605 86 HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDGPQ 164 (845)
Q Consensus 86 ~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~~~ 164 (845)
+..++..++.+| .++-..+|.+|..++..++..-++.... .+..|+-+++ +..-.+.....+++|.++...|+
T Consensus 30 d~~~l~~lI~~L-DDDlwtV~kNAl~vi~~i~~~~~el~ep-----l~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe 103 (253)
T 2db0_A 30 DESVLKKLIELL-DDDLWTVVKNAISIIMVIAKTREDLYEP-----MLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE 103 (253)
T ss_dssp CHHHHHHHHHHT-TCSCHHHHHHHHHHHHHHHTTCGGGHHH-----HHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred hHHHHHHHHHHh-ccHHHHHHHhHHHHHHHHHHHhHHHHHH-----HHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence 445788999999 4666789999999999999877765554 3445666654 45667777888999999977776
Q ss_pred hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhC
Q psy12605 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKN 244 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~ 244 (845)
..+. .+|.+..-.+-. +..++.+..++|..+.+.++ ....+.+.-+..++.+.|..
T Consensus 104 ~v~~-----vVp~lfanyrig-d~kikIn~~yaLeeIaranP-----~l~~~v~rdi~smltskd~~------------- 159 (253)
T 2db0_A 104 LVKS-----MIPVLFANYRIG-DEKTKINVSYALEEIAKANP-----MLMASIVRDFMSMLSSKNRE------------- 159 (253)
T ss_dssp HHHH-----HHHHHHHHSCCC-SHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHTSCSSHH-------------
T ss_pred HHHh-----hHHHHHHHHhcC-CccceecHHHHHHHHHHhCh-----HHHHHHHHHHHHHhcCCChH-------------
Confidence 5443 356666555555 56899999999999998762 34556777788888876654
Q ss_pred hhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcC
Q psy12605 245 PQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNC 324 (845)
Q Consensus 245 ~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~ 324 (845)
-+..|+..+..+.. +..+. -...+|.|..+|.+.+.-|+..|..+|.+++..++..+..+.
T Consensus 160 ------------Dkl~aLnFi~alGe---n~~~y--v~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRkii~-- 220 (253)
T 2db0_A 160 ------------DKLTALNFIEAMGE---NSFKY--VNPFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKVVI-- 220 (253)
T ss_dssp ------------HHHHHHHHHHTCCT---TTHHH--HGGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHHHH--
T ss_pred ------------HHHHHHHHHHHHhc---cCccc--cCcchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHHHH--
Confidence 33444444444443 33333 246789999999999999999999999999999888777553
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhh
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 353 (845)
..+.-+++.++.+....-..|+.+.
T Consensus 221 ----~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 221 ----KRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp ----HHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred ----HHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 3455667777777777766777663
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=98.39 E-value=3.1e-05 Score=90.39 Aligned_cols=298 Identities=13% Similarity=0.106 Sum_probs=189.8
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCC-------ChhHHHHHHHHHHHHhcCChhhHHHHH
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD-------RPNLQFEAAWALTNIASGTSAQTQEVV 128 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-------~~~i~~~a~~~L~~la~~~~~~~~~i~ 128 (845)
++++..+-.|+..|.-+-.... . .++..|...|..++ ++.+|..|+..|+-+..++.+ .
T Consensus 406 s~~~~ik~GAllaLGli~ag~~----~-----~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~--e--- 471 (963)
T 4ady_A 406 ASSRFIKGGSLYGLGLIYAGFG----R-----DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN--I--- 471 (963)
T ss_dssp CSCHHHHHHHHHHHHHHTTTTT----H-----HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC--H---
T ss_pred CCcHHHHHHHHHHHHHhcCCCc----H-----HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC--H---
Confidence 4556666667777765433221 1 14677788885333 367899999999987655321 1
Q ss_pred HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCC
Q psy12605 129 AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 208 (845)
Q Consensus 129 ~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~ 208 (845)
.+++.|.++|.+++..+++.|+.+||.+-..+. +.+ ++..|+..+.+..+..+++.++..|.-+..+.
T Consensus 472 --ev~e~L~~~L~dd~~~~~~~AalALGli~vGTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~--- 539 (963)
T 4ady_A 472 --EVYEALKEVLYNDSATSGEAAALGMGLCMLGTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYGR--- 539 (963)
T ss_dssp --HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---
T ss_pred --HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---
Confidence 256778888888877778899999998732221 111 24455555544446789999999999887655
Q ss_pred CChhHHhhHHHHHHhhcc-cCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHH--HhhcCChhhHHHHHhcCch
Q psy12605 209 PSMSTIIELLPALNILIH-HHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALS--YLTDGGNDQIQMVIDSGVV 285 (845)
Q Consensus 209 ~~~~~~~~~l~~L~~ll~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~--~l~~~~~~~~~~~~~~g~i 285 (845)
...++.++..+. +.++- ++..++.++. |...++... +
T Consensus 540 ------~e~~~~li~~L~~~~dp~-------------------------vRygaa~alglAyaGTGn~~a---------I 579 (963)
T 4ady_A 540 ------QELADDLITKMLASDESL-------------------------LRYGGAFTIALAYAGTGNNSA---------V 579 (963)
T ss_dssp ------GGGGHHHHHHHHHCSCHH-------------------------HHHHHHHHHHHHTTTSCCHHH---------H
T ss_pred ------hHHHHHHHHHHHhCCCHH-------------------------HHHHHHHHHHHHhcCCCCHHH---------H
Confidence 234555555554 34554 6666666554 333333322 3
Q ss_pred hhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh-cCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 286 PSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL-THPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 286 ~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+.|++.+ .+.+..++..|+-+|+.+..++++ .++.++.+| .+.++.+|..|+++|+.++.+++..
T Consensus 580 q~LL~~~~~d~~d~VRraAViaLGlI~~g~~e---------~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~~---- 646 (963)
T 4ady_A 580 KRLLHVAVSDSNDDVRRAAVIALGFVLLRDYT---------TVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGLQ---- 646 (963)
T ss_dssp HHHHHHHHHCSCHHHHHHHHHHHHHHTSSSCS---------SHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCH----
T ss_pred HHHHHHhccCCcHHHHHHHHHHHHhhccCCHH---------HHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCcH----
Confidence 3344444 456788999999999999877542 345566544 5689999999999999998876532
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH-HHHHcCChHHHHHhhCC--CCHHHHHHHHHHHHH
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ-EVVAAGAVPLFLRLLMS--PHSNVCEQAVWALGN 440 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~-~l~~~g~i~~Lv~lL~~--~~~~v~~~a~~~L~n 440 (845)
.++..|..+..+ .+..|+..|+.+|+.+..++.+... .+ .+....|.....+ .++..+.-+..+.|-
T Consensus 647 ---~aid~L~~L~~D-----~d~~Vrq~Ai~ALG~Ig~gtnna~~~rv--a~~l~~L~~~~~dk~~d~~~~fga~iAqGl 716 (963)
T 4ady_A 647 ---SAIDVLDPLTKD-----PVDFVRQAAMIALSMILIQQTEKLNPQV--ADINKNFLSVITNKHQEGLAKFGACVAQGI 716 (963)
T ss_dssp ---HHHHHHHHHHTC-----SSHHHHHHHHHHHHHHSTTCCTTTCTTH--HHHHHHHHHHHHCSSSCHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHccC-----CCHHHHHHHHHHHHHHhcCCccccchHH--HHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 245556666655 4899999999999999876654310 00 0122335555543 456677666666665
Q ss_pred hh
Q psy12605 441 II 442 (845)
Q Consensus 441 l~ 442 (845)
+-
T Consensus 717 l~ 718 (963)
T 4ady_A 717 MN 718 (963)
T ss_dssp HT
T ss_pred Hh
Confidence 43
|
| >2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00022 Score=87.50 Aligned_cols=139 Identities=12% Similarity=0.064 Sum_probs=82.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-----C
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG-----T 120 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-----~ 120 (845)
+..++ ..+.++|++.+.+|-..|..+-. .+ +..+.+..+|..+.++.+|..|+.+|.+.... +
T Consensus 9 l~~~l-~~~~~~d~~~r~~A~~~L~~~~~-~p----------~~w~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~ 76 (971)
T 2x1g_F 9 LEEAV-VSFYRSNSQNQAITHEWLTDAEA-SP----------QAWQFSWQLMQLGKSQEVQFFGAITLHSKLMKHWHEVP 76 (971)
T ss_dssp --CTH-HHHHTSTTTC----CHHHHHTTT-ST----------HHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHCGGGCC
T ss_pred HHHHH-HHHcCCCHHHHHHHHHHHHHHHc-CH----------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHccHhhCC
Confidence 44555 45667777788888888876422 21 13566788886667889999999999987642 2
Q ss_pred hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC-----CHHHHHHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-----PISFLRNVT 195 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~-----~~~~~~~a~ 195 (845)
++.+..+ ....++.+...- ++...++.+.+.+|..|+...-. . =.+.++.++..++.+. +...+..+.
T Consensus 77 ~~~~~~i-r~~ll~~l~~~~-~~~~~vr~kl~~~la~i~~~~~p-~----Wp~~l~~l~~~~~~~~~~~~~~~~~~~~~l 149 (971)
T 2x1g_F 77 PENREEL-KQKILESIVRFA-GGPKIVLNRLCISLGAYIVHMLG-E----WPGAIEEVINTFQNQRMPNVSADVQLWIML 149 (971)
T ss_dssp GGGHHHH-HHHHHHHHHHHT-TSCHHHHHHHHHHHHHHHHHTTC-C----------HHHHHHHHTC----CHHHHHHHHH
T ss_pred HHHHHHH-HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHccc-c----ccHHHHHHHHHHhccccccCCCHHHHHHHH
Confidence 3333333 334555555543 33578999999999998855321 1 0235677777775421 235677788
Q ss_pred HHHHHhhc
Q psy12605 196 WVIVNLCR 203 (845)
Q Consensus 196 ~~L~~l~~ 203 (845)
.+|..++.
T Consensus 150 ~iL~~l~E 157 (971)
T 2x1g_F 150 EVLTAIPE 157 (971)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhHH
Confidence 88887764
|
| >1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A | Back alignment and structure |
|---|
Probab=98.29 E-value=0.0062 Score=74.40 Aligned_cols=422 Identities=12% Similarity=0.103 Sum_probs=217.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcC-----
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASG----- 119 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~----- 119 (845)
+.+++ ....++|...+ |-..|.++ ... -|....|++++... .+..+|..|+..|.+....
T Consensus 7 l~~~L-~~~~spd~~~r--Ae~~L~~~-~~~----------p~~~~~L~~il~~~~~~~~vR~~A~i~lkn~i~~~w~~~ 72 (960)
T 1wa5_C 7 VAKFL-AESVIASTAKT--SERNLRQL-ETQ----------DGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDE 72 (960)
T ss_dssp HHHHH-HHTTSGGGHHH--HHHHHHHH-HTS----------TTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred HHHHH-HHhcCCCHHHH--HHHHHHHh-hcC----------CCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCCCc
Confidence 34455 44556666666 88888765 222 13577888888433 4568999999999987632
Q ss_pred ------ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHH
Q psy12605 120 ------TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLR 192 (845)
Q Consensus 120 ------~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~ 192 (845)
+++.+..+. . .++..+.+++..++.+++.++..|+... |. + =.+.++.|+..++++. ...+.
T Consensus 73 ~~~~~l~~~~k~~ik-~----~ll~~l~~~~~~ir~~l~~~ia~ia~~d~p~-~----Wp~ll~~L~~~l~s~~-~~~~~ 141 (960)
T 1wa5_C 73 NGNHLLPANNVELIK-K----EIVPLMISLPNNLQVQIGEAISSIADSDFPD-R----WPTLLSDLASRLSNDD-MVTNK 141 (960)
T ss_dssp SSCBSSCHHHHHHHH-H----HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTT-T----CTTHHHHHHTTCCSSC-TTHHH
T ss_pred ccCCCCCHHHHHHHH-H----HHHHHHHhCCHHHHHHHHHHHHHHHHhhCcc-c----hhHHHHHHHHHhCCCC-HHHHH
Confidence 222333222 2 3344444455889999999999987431 10 0 0135777888887653 35778
Q ss_pred HHHHHHHHhhcCCCCCCCh----h----HHhhHHHHHHhh-------cccCCchhhHHHHHHHhhhChhhHHhhhhhHHH
Q psy12605 193 NVTWVIVNLCRNKDPPPSM----S----TIIELLPALNIL-------IHHHDTSVSIYLWLSIIEKNPQISKILVSKMKI 257 (845)
Q Consensus 193 ~a~~~L~~l~~~~~~~~~~----~----~~~~~l~~L~~l-------l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 257 (845)
.++.++..+++........ . ......+.+..+ +....... +... ...++
T Consensus 142 ~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~------------~~~~----~~~~~ 205 (960)
T 1wa5_C 142 GVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNK------------ASLN----ILFDV 205 (960)
T ss_dssp HHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--C------------HHHH----HHHHH
T ss_pred HHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH------------HHHH----HHHHH
Confidence 8999999999854321110 0 122233333332 22211100 0000 00113
Q ss_pred HHHHHHHHHHhhcCChhhHHHHHh--cCchhhHHhhccCC------c---------hhhHHHHHHHHHHHhcCChhhHHH
Q psy12605 258 LVDTVWALSYLTDGGNDQIQMVID--SGVVPSLIPLLSHK------E---------VKVQTASLRAVGNIVTGTDEQTQV 320 (845)
Q Consensus 258 ~~~a~~~L~~l~~~~~~~~~~~~~--~g~i~~Lv~lL~~~------~---------~~v~~~al~~L~nl~~~~~~~~~~ 320 (845)
...++.++.++...+-. ..+.+ ...++.+..+|... + ..++..+++++..+..........
T Consensus 206 ~~~~~k~~~~l~~~~~~--~~~~~~~~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~~~f~~ 283 (960)
T 1wa5_C 206 LLVLIKLYYDFNCQDIP--EFFEDNIQVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYEDVFGP 283 (960)
T ss_dssp HHHHHHHHHHHHSSCCC--HHHHHTHHHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHhhccch--HHHHHHHHHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33345555444322111 11101 12223334444210 0 246778888888876443332111
Q ss_pred HhcCCccchhhHhhc-----CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHH-----HHhh--hcc--------
Q psy12605 321 ILNCDALSHFPALLT-----HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKII-----ANLQ--KVG-------- 380 (845)
Q Consensus 321 i~~~~~l~~L~~lL~-----~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv-----~lL~--~~~-------- 380 (845)
.. ..+++..++.+. ..++.++..++..+..++.. +...+.+.....++.++ ..+. ...
T Consensus 284 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~-~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp 361 (960)
T 1wa5_C 284 MI-NEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRI-PKYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDP 361 (960)
T ss_dssp HH-HHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTS-HHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCH
T ss_pred HH-HHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCc-HhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCH
Confidence 11 134455555553 34578888899888887543 22111110112333333 2221 000
Q ss_pred --------cccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhcCCh
Q psy12605 381 --------RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM------SPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 381 --------~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~------~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
+..+....+..|..+|..++...++..-. ..++.+.+.+. +.+...++.|+.+++.++....
T Consensus 362 ~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~~~v~~----~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~ 437 (960)
T 1wa5_C 362 IEYIRRDLEGSDTDTRRRACTDFLKELKEKNEVLVTN----IFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGN 437 (960)
T ss_dssp HHHHHHHHHC----CHHHHHHHHHHHHHHHCHHHHHH----HHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSC
T ss_pred HHHHHhccCcccccCcHHHHHHHHHHHHHHcchhHHH----HHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhc
Confidence 00122356777888888887654322111 12233334444 4567788999999999975321
Q ss_pred -------------HHHHHHHhCCChHHHHhccCCC--CChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCC
Q psy12605 447 -------------QLRDYVINMGVVPPLLSFIKPD--IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 511 (845)
Q Consensus 447 -------------~~~~~l~~~g~l~~L~~ll~~~--~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~ 511 (845)
+....+. ..++..+.+. ...-++..++|+++.++... ........++.+...+.+.
T Consensus 438 ~~~~~~~~~~~~~~l~~~l~-----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~----~~~~l~~~l~~l~~~L~d~ 508 (960)
T 1wa5_C 438 ITNAGVSSTNNLLNVVDFFT-----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL----TKAQLIELMPILATFLQTD 508 (960)
T ss_dssp CBTTBCCCBCTTCCHHHHHH-----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS----CHHHHHHHHHHHHHHTTCS
T ss_pred cccCCcccccccccHHHHHH-----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhC----CHHHHHHHHHHHHHHhCCC
Confidence 1111110 1122223333 24567788999999999764 2356778888888888777
Q ss_pred ChhHHHH-HH-HHhhh
Q psy12605 512 DTSVSIY-LW-LSIIE 525 (845)
Q Consensus 512 d~~v~~~-~~-l~~l~ 525 (845)
+..|..+ |+ +..+.
T Consensus 509 ~~~V~~~A~~Al~~~~ 524 (960)
T 1wa5_C 509 EYVVYTYAAITIEKIL 524 (960)
T ss_dssp CHHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHHHHH
Confidence 7777665 44 54443
|
| >3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} | Back alignment and structure |
|---|
Probab=98.28 E-value=3.4e-05 Score=80.98 Aligned_cols=262 Identities=13% Similarity=0.087 Sum_probs=154.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHH
Q psy12605 47 DMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE 126 (845)
Q Consensus 47 ~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~ 126 (845)
..++ +++.++|...+.-....+..+.... +... =++..|.+=+ .++++-+|-.|+++|+++.. ++-...
T Consensus 71 ~~v~-kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i------Lv~Nsl~kDl-~~~N~~iR~lALRtL~~I~~--~~m~~~ 139 (355)
T 3tjz_B 71 FAMT-KLFQSNDPTLRRMCYLTIKEMSCIA-EDVI------IVTSSLTKDM-TGKEDSYRGPAVRALCQITD--STMLQA 139 (355)
T ss_dssp HHHH-GGGGCCCHHHHHHHHHHHHHHTTTS-SCGG------GGHHHHHHHH-HSSCHHHHHHHHHHHHHHCC--TTTHHH
T ss_pred HHHH-HHhcCCCHHHHHHHHHHHHHhCCCH-HHHH------HHHHHHHhhc-CCCcHhHHHHHHHHHhcCCC--HHHHHH
Confidence 3445 5788999998888888887765542 2111 1467777788 46889999999999999975 343333
Q ss_pred HHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 127 VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
..+++.+.|.+.++.++..|+.+...+....|+..+ +.++.+.+++.+.+ .-++.+|+.+|..+++.+
T Consensus 140 -----l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v~-----~~~~~l~~ll~d~n-~~V~~~Al~lL~ei~~~d- 207 (355)
T 3tjz_B 140 -----IERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVVK-----RWVNEAQEAASSDN-IMVQYHALGLLYHVRKND- 207 (355)
T ss_dssp -----HHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHHH-----TTHHHHHHHTTCSS-HHHHHHHHHHHHHHHTTC-
T ss_pred -----HHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHhcCCC-ccHHHHHHHHHHHHHhhc-
Confidence 567788899999999999999999999988776432 57888888887764 467789999999998754
Q ss_pred CCCChhHHhhHHHHHHhhcccC---CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC-hhhHHHHHhc
Q psy12605 207 PPPSMSTIIELLPALNILIHHH---DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG-NDQIQMVIDS 282 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~ 282 (845)
...+..++..+... ++. .+...+..+..+...+ +. ...
T Consensus 208 --------~~a~~kLv~~l~~~~l~~~~-------------------------~q~~llr~l~~~~~~d~~~-----~~~ 249 (355)
T 3tjz_B 208 --------RLAVSKMISKFTRHGLKSPF-------------------------AYCMMIRVASRQLEDEDGS-----RDS 249 (355)
T ss_dssp --------HHHHHHHHHHHHSSCCSCHH-------------------------HHHHHHHHHTCC---------------
T ss_pred --------hHHHHHHHHHHhcCCCcChH-------------------------HHHHHHHHHHHhccccchh-----hHH
Confidence 11333444333332 233 2222333332332222 11 134
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHH
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQA 362 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~ 362 (845)
..++.+.++|++.++.|...|+++|..+...... .. ..++..+..++.++++++|-.|+..|..+....+...+.
T Consensus 250 ~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~----~~-~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~~v~~ 324 (355)
T 3tjz_B 250 PLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAK----EL-APAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPSAVTA 324 (355)
T ss_dssp -------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC-------------
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHH----HH-HHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcHHHHH
Confidence 6678888999999999999999999998542211 11 246788888899999999999999999887766544321
Q ss_pred HHhcCChHHHHHHhhhc
Q psy12605 363 VIDAGLLPKIIANLQKV 379 (845)
Q Consensus 363 l~~~~~i~~Lv~lL~~~ 379 (845)
.-..+.+++.++
T Consensus 325 -----~n~~ie~li~d~ 336 (355)
T 3tjz_B 325 -----CNLDLENLVTDA 336 (355)
T ss_dssp -----------------
T ss_pred -----HHHHHHHHccCC
Confidence 223445555553
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00015 Score=77.65 Aligned_cols=343 Identities=13% Similarity=0.092 Sum_probs=197.7
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCCh---hhHHHHHHcCCh-HHHHH-hhCCCChhHHHHHHHHHHHhcCC
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTS---AQTQEVVAAGAV-PLFLR-LLMSPHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~---~~~~~i~~~g~i-~~L~~-lL~s~~~~v~~~a~~~L~nla~~ 161 (845)
..++..++.+|+...+.++....+..+..+...++ .....+.+..-. ..+.. ++..++.-....+..++..++..
T Consensus 76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~~ 155 (480)
T 1ho8_A 76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN 155 (480)
T ss_dssp STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhcc
Confidence 45788999999877888888888888888887765 444444443322 22333 33444444556777776777644
Q ss_pred ChhhHHHHHhcCChh--hHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChh-HHhhHHHHHHhhcccC-CchhhHHHH
Q psy12605 162 GPQLRDYVINMGVVP--PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS-TIIELLPALNILIHHH-DTSVSIYLW 237 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~--~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~-~~~~~l~~L~~ll~~~-~~~~~~~~~ 237 (845)
++...+.+-. .+. .++..+.+..+...+..++.+|..|.+.+.....+. .....+|.++..+... +.......+
T Consensus 156 ~~~~~~~l~~--l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~ 233 (480)
T 1ho8_A 156 GLHNVKLVEK--LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIV 233 (480)
T ss_dssp TTCCHHHHHH--HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC--------
T ss_pred CCccHhHHHH--HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccccccc
Confidence 4331111100 112 344455543333446678888888887664332221 1223566665544321 000000000
Q ss_pred HHHh-hhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCch--hhHHhhcc-CCchhhHHHHHHHHHHHhcC
Q psy12605 238 LSII-EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV--PSLIPLLS-HKEVKVQTASLRAVGNIVTG 313 (845)
Q Consensus 238 ~~l~-~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i--~~Lv~lL~-~~~~~v~~~al~~L~nl~~~ 313 (845)
.... ..+.+ ++..++.++.-++... +..+.+...++. +.|+..++ +..++|.+-++.+|.|+...
T Consensus 234 ~~~~~~~~~Q----------l~Y~~ll~iWlLSF~~-~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~ 302 (480)
T 1ho8_A 234 ATNSNHLGIQ----------LQYHSLLLIWLLTFNP-VFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCST 302 (480)
T ss_dssp -----CCHHH----------HHHHHHHHHHHHTTSH-HHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSS
T ss_pred cccCCCccHH----------HHHHHHHHHHHHHcCH-HHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcc
Confidence 0000 00112 5566666666666543 355566555543 55666664 46789999999999999876
Q ss_pred Ch----h-hHHHHhcCCccchhhHhhcC---CchhhHHHHHHHHHHh-------h--------------cCChHHHH-HH
Q psy12605 314 TD----E-QTQVILNCDALSHFPALLTH---PKEKICKEAVWFLSNI-------T--------------AGNQAQVQ-AV 363 (845)
Q Consensus 314 ~~----~-~~~~i~~~~~l~~L~~lL~~---~~~~~~~~a~~~L~nl-------~--------------~~~~~~~~-~l 363 (845)
.. . ..+.+...+++ .+++.|.. .|+++....-.....+ + .-+|.... .+
T Consensus 303 ~~~~~~~~~~~~~~~~~~l-~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~F 381 (480)
T 1ho8_A 303 RVKQHKKVIKQLLLLGNAL-PTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGF 381 (480)
T ss_dssp SSTTHHHHHHHHHHHHCHH-HHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHH
T ss_pred cchhhhhHHHHHHHHccch-HHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhH
Confidence 42 1 12233334454 45555533 4665554332211111 1 00111111 22
Q ss_pred Hhc----------CChHHHHHHhhhccc-c----cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCH
Q psy12605 364 IDA----------GLLPKIIANLQKVGR-I----VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHS 428 (845)
Q Consensus 364 ~~~----------~~i~~Lv~lL~~~~~-~----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~ 428 (845)
... .++..|+++|.+... . ..++.+..-||.=++.++.+.|+.+..+-+.|+=..+.+++.++++
T Consensus 382 W~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~ 461 (480)
T 1ho8_A 382 WSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDS 461 (480)
T ss_dssp HHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSH
T ss_pred HHHHHHHHHhcchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCH
Confidence 211 257889999974200 0 0367788889999999999999999988889999999999999999
Q ss_pred HHHHHHHHHHHHhhc
Q psy12605 429 NVCEQAVWALGNIIG 443 (845)
Q Consensus 429 ~v~~~a~~~L~nl~~ 443 (845)
+|+..|+.|+..+..
T Consensus 462 ~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 462 RVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999987654
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.22 E-value=4.3e-05 Score=77.00 Aligned_cols=186 Identities=15% Similarity=0.140 Sum_probs=136.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEV 127 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i 127 (845)
.+. +.+++.+...+..|+..|..++.......... -..+++.|...|..+.+..++..|+.+|..++..-.......
T Consensus 19 ~l~-~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~~--~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~ 95 (242)
T 2qk2_A 19 DFY-DKLEEKKWTLRKESLEVLEKLLTDHPKLENGE--YGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNY 95 (242)
T ss_dssp THH-HHHTCSSHHHHHHHHHHHHHHHHHCSSBCCCC--CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHH
T ss_pred HHH-hhhccCCHHHHHHHHHHHHHHHccCCCCCCCC--HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 355 78899999999999999999987622110000 123578888888436788999999999999995322211121
Q ss_pred HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC
Q psy12605 128 VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 207 (845)
Q Consensus 128 ~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 207 (845)
+ ...+|.++..+.+++..+++.|..+|..++.... .. ..++.+...+.+. +..++..++..|..+.....+
T Consensus 96 ~-~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~-~~------~ll~~l~~~l~~~-~~~vr~~~l~~l~~~l~~~~~ 166 (242)
T 2qk2_A 96 A-SACVPSLLEKFKEKKPNVVTALREAIDAIYASTS-LE------AQQESIVESLSNK-NPSVKSETALFIARALTRTQP 166 (242)
T ss_dssp H-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSC-HH------HHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTTCCG
T ss_pred H-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCC-HH------HHHHHHHHHHcCC-ChHHHHHHHHHHHHHHHHcCC
Confidence 1 2489999999999999999999999999986532 22 1467788888876 448999999999997655432
Q ss_pred C-CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 208 P-PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 208 ~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
. ........++|.+..++.+.+++ ++..|..++..++.
T Consensus 167 ~~~~~~~l~~l~p~l~~~l~D~~~~-------------------------VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 167 TALNKKLLKLLTTSLVKTLNEPDPT-------------------------VRDSSAEALGTLIK 205 (242)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSSCHH-------------------------HHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHhcCCChH-------------------------HHHHHHHHHHHHHH
Confidence 2 23345668999999999888888 88888888877653
|
| >2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.16 E-value=6.2e-06 Score=83.25 Aligned_cols=185 Identities=12% Similarity=0.138 Sum_probs=135.8
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhC-CCChhHHHHHHHHHHHhcCCC-hhhHH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM-SPHSNVCEQAVWALGNIIGDG-PQLRD 167 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~-s~~~~v~~~a~~~L~nla~~~-~~~r~ 167 (845)
-+.+.+.+ .+.+...|..|+..|..+..+.++....-. ...++.|.+++. +++..++..|+.+++.++..- +.+..
T Consensus 17 ~~~l~~~l-~s~~w~~R~~a~~~L~~l~~~~~~~~~~~~-~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 17 PKDFYDKL-EEKKWTLRKESLEVLEKLLTDHPKLENGEY-GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp CTTHHHHH-TCSSHHHHHHHHHHHHHHHHHCSSBCCCCC-HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred CHHHHhhh-ccCCHHHHHHHHHHHHHHHccCCCCCCCCH-HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 34577888 467789999999999999865322111000 135778888994 899999999999999998431 11222
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~ 247 (845)
.+ ...++.++..+.+. ...++..+..+|..++.... ...++|.+...+.+.++.
T Consensus 95 ~~--~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~-------~~~ll~~l~~~l~~~~~~---------------- 148 (242)
T 2qk2_A 95 YA--SACVPSLLEKFKEK-KPNVVTALREAIDAIYASTS-------LEAQQESIVESLSNKNPS---------------- 148 (242)
T ss_dssp HH--HHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSC-------HHHHHHHHHHHTTCSCHH----------------
T ss_pred HH--HHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHcCCChH----------------
Confidence 21 12588888888876 55899999999999987542 457889999999888887
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcC-Chh-hHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhc
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDG-GND-QIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~-~~~-~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~ 312 (845)
++..++..|..+... .++ ...... ..+++.++.+|.++++.+|..|..+++.++.
T Consensus 149 ---------vr~~~l~~l~~~l~~~~~~~~~~~~l-~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~ 205 (242)
T 2qk2_A 149 ---------VKSETALFIARALTRTQPTALNKKLL-KLLTTSLVKTLNEPDPTVRDSSAEALGTLIK 205 (242)
T ss_dssp ---------HHHHHHHHHHHHHTTCCGGGCCHHHH-HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHcCCCCccHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence 888999999885433 232 112222 2678999999999999999999999999974
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.15 E-value=3.9e-05 Score=73.01 Aligned_cols=186 Identities=17% Similarity=0.155 Sum_probs=142.3
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH 294 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~ 294 (845)
...+..|..++...|+. ++..++.+|-.+...-+.......-..+++.++.++.+
T Consensus 32 e~~l~~L~~LL~dkD~~-------------------------vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~ 86 (265)
T 3b2a_A 32 KRALFLILELAGEDDET-------------------------TRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQ 86 (265)
T ss_dssp HHHHHHHHHHTTSSCHH-------------------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCS
T ss_pred hhHHHHHHHHHhccchH-------------------------HHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhc
Confidence 35788888899888888 88899999988776544434444455788999999999
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHH
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA 374 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~ 374 (845)
++..+...|++||+.+..+.+-..+.+. .+...+.++++++++-++.+++..++.+-.... ..+++..+.+
T Consensus 87 ~dEkval~A~r~L~~LLe~vpL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~-------~~~V~~~l~s 157 (265)
T 3b2a_A 87 ENEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED-------SKLVRTYINE 157 (265)
T ss_dssp TTHHHHHHHHHHHHHHHTTCCBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC-------CHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc-------hHHHHHHHHH
Confidence 9999999999999999877544333332 255778888899999999999999998822221 1234667778
Q ss_pred HhhhcccccCChhHHHHHHHHHHHHhcCC--hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC
Q psy12605 375 NLQKVGRIVLRPNLQFEAAWALTNIASGT--SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD 444 (845)
Q Consensus 375 lL~~~~~~~~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~ 444 (845)
++.+ .+.++|..+..++.+++..+ ++... +.+.-+-.+|++.++.+++.|+.++..+...
T Consensus 158 Ll~S-----kd~~vK~agl~~L~eia~~S~D~~i~~-----~I~~eI~elL~~eD~~l~e~aLd~Le~ils~ 219 (265)
T 3b2a_A 158 LVVS-----PDLYTKVAGFCLFLNMLNSSADSGHLT-----LILDEIPSLLQNDNEFIVELALDVLEKALSF 219 (265)
T ss_dssp HHTC-----SSHHHHHHHHHHHHHHGGGCSSCCCGG-----GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTS
T ss_pred HHhC-----CChhHHHHHHHHHHHhhcccCCHHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcC
Confidence 8844 58999999999999999743 22222 3445577889999999999999999998875
|
| >1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9 | Back alignment and structure |
|---|
Probab=98.14 E-value=3.7e-05 Score=82.42 Aligned_cols=255 Identities=15% Similarity=0.146 Sum_probs=156.6
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcC--ChHHHHHhhCC---------------C--ChhHHHHHH
Q psy12605 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAG--AVPLFLRLLMS---------------P--HSNVCEQAV 152 (845)
Q Consensus 92 ~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g--~i~~L~~lL~s---------------~--~~~v~~~a~ 152 (845)
.++..|....+...+.-++.+|..+... ++.+..+.+.+ .+|++++.+.. + ...++.+++
T Consensus 171 ~~~~~L~~~~~~~~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l 249 (480)
T 1ho8_A 171 NLINILQNIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL 249 (480)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred HHHHHhccccCCchHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence 4566664323345577888999998864 77888887643 36777654431 1 245688999
Q ss_pred HHHHHhcCCChhhHHHHHhcCCh--hhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC-----hhHHhhHHHHHHhhc
Q psy12605 153 WALGNIIGDGPQLRDYVINMGVV--PPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS-----MSTIIELLPALNILI 225 (845)
Q Consensus 153 ~~L~nla~~~~~~r~~i~~~g~i--~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~~~~l~~L~~ll 225 (845)
.|++-++.+ ++..+.+...+.. +.|+..++....+.+.|.++.+|.|+......... +....++++.+-.+-
T Consensus 250 l~iWlLSF~-~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~l~~l~~L~ 328 (480)
T 1ho8_A 250 LLIWLLTFN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLS 328 (480)
T ss_dssp HHHHHHTTS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHcC-HHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccchHHHHHHh
Confidence 999999965 4566677666643 56777787777789999999999999875521111 112234555444444
Q ss_pred cc--CCchhh--HHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChh---------hHHHHHh--cCchhhHHh
Q psy12605 226 HH--HDTSVS--IYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND---------QIQMVID--SGVVPSLIP 290 (845)
Q Consensus 226 ~~--~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~---------~~~~~~~--~g~i~~Lv~ 290 (845)
.. .|+++. +..+......+- ...- ..-++......-.-+.++- +...+.+ ..++..|+.
T Consensus 329 ~rk~~Dedl~edl~~L~e~L~~~~--~~lt----sfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~ 402 (480)
T 1ho8_A 329 ERKYSDEELRQDISNLKEILENEY--QELT----SFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIE 402 (480)
T ss_dssp SSCCSSHHHHHHHHHHHHHHHHHH--HTCC----HHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHH
T ss_pred hCCCCcHHHHHHHHHHHHHHHHHH--Hhcc----cHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHH
Confidence 33 455521 011100000000 0000 0000111111111111111 1111111 135678899
Q ss_pred hccC----------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 291 LLSH----------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 291 lL~~----------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
+|.+ .++.+..-|+.=||.++...+..+..+-+.|+-..++.++.++|+++|.+|+.++..+..
T Consensus 403 iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~ 476 (480)
T 1ho8_A 403 LLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 476 (480)
T ss_dssp HHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred HHhhhccccccccCCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 9963 467789999999999999988888888888999999999999999999999999987643
|
| >3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.12 E-value=0.0001 Score=70.16 Aligned_cols=202 Identities=16% Similarity=0.134 Sum_probs=150.7
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh-hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPP 209 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~-~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~ 209 (845)
+.+..|..+|.+.|+.++..++.+|..+-..-+. .+...++ ..++.++.++.+. +..+.-.|+.+|..+..+.+.
T Consensus 33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e-~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL-- 108 (265)
T 3b2a_A 33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLE-RHLDVFINALSQE-NEKVTIKALRALGYLVKDVPM-- 108 (265)
T ss_dssp HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHH-HHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCB--
T ss_pred hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHH-HHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCC--
Confidence 4678889999999999999999999999866333 3444444 3589999999776 668999999999999998743
Q ss_pred ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 210 SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 210 ~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
..........+|..++.++++- +..+++..+..+.-.+. ..+++..+.
T Consensus 109 ~~~~y~Kl~~aL~dlik~~~~i-------------------------l~~eaae~Lgklkv~~~-------~~~V~~~l~ 156 (265)
T 3b2a_A 109 GSKTFLKAAKTLVSLLESPDDM-------------------------MRIETIDVLSKLQPLED-------SKLVRTYIN 156 (265)
T ss_dssp CHHHHHHHHHHHHHHTTSCCHH-------------------------HHHHHHHHHHHCCBSCC-------CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCch-------------------------HHHHHHHHhCcCCcccc-------hHHHHHHHH
Confidence 3344567788888888877776 77888888887732221 124456788
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
.++++.+..++.++++++.+++..+++. .+ -.+++.-+-.++++.|+.+++.|+.++-.+.... +..+++
T Consensus 157 sLl~Skd~~vK~agl~~L~eia~~S~D~--~i-~~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p-------i~~~~~ 226 (265)
T 3b2a_A 157 ELVVSPDLYTKVAGFCLFLNMLNSSADS--GH-LTLILDEIPSLLQNDNEFIVELALDVLEKALSFP-------LLENVK 226 (265)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHGGGCSSC--CC-GGGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC-------CCSCCH
T ss_pred HHHhCCChhHHHHHHHHHHHhhcccCCH--HH-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc-------ccHhHH
Confidence 8889999999999999999998654321 01 1246777899999999999999999999985542 124566
Q ss_pred HHHHHHhhh
Q psy12605 370 PKIIANLQK 378 (845)
Q Consensus 370 ~~Lv~lL~~ 378 (845)
+.+...+..
T Consensus 227 ~~~~~~~~~ 235 (265)
T 3b2a_A 227 IELLKISRI 235 (265)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
|
| >2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B | Back alignment and structure |
|---|
Probab=98.07 E-value=0.0015 Score=80.04 Aligned_cols=409 Identities=11% Similarity=0.082 Sum_probs=196.9
Q ss_pred HHHc-CCChHHHHHHHHHHHHHHcCCC---CccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC-hhhHHH
Q psy12605 52 EAAR-KDNPELQLLAVQSARKLLSSDK---NPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT-SAQTQE 126 (845)
Q Consensus 52 ~~l~-~~~~~~~~~a~~~l~~ll~~~~---~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~-~~~~~~ 126 (845)
..+. +.++.++..|+..|++.+...- ++.....+...+++.+.+.- .+.+.+|...+.++..++... ++.-
T Consensus 64 ~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l~~~~~~~ir~~ll~~l~~~~--~~~~~ir~kl~~~la~i~~~~~p~~W-- 139 (963)
T 2x19_B 64 QLLQPDKVPEIQYFGASALHIKISRYWSDIPTDQYESLKAQLFTQITRFA--SGSKIVLTRLCVALASLALSMMPDAW-- 139 (963)
T ss_dssp HHTSTTSCHHHHHHHHHHHHHHHHHCGGGSCGGGHHHHHHHHHHHHHHTT--TSCHHHHHHHHHHHHHHHHHHTTTTS--
T ss_pred HHhcCCCchHHHHHHHHHHHHHHHhCHHhCCHHHHHHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHhCcccc--
Confidence 4443 5678899999999999876431 11123333444555555431 235789999999999998641 1111
Q ss_pred HHHcCChHHHHHhhCC-----CChhHHHHHHHHHHHhcCCChh------hHHHHHh--cCChhhH----HhhhcCCC-CH
Q psy12605 127 VVAAGAVPLFLRLLMS-----PHSNVCEQAVWALGNIIGDGPQ------LRDYVIN--MGVVPPL----LSFIKPDI-PI 188 (845)
Q Consensus 127 i~~~g~i~~L~~lL~s-----~~~~v~~~a~~~L~nla~~~~~------~r~~i~~--~g~i~~L----v~ll~~~~-~~ 188 (845)
.+.++.|+.++++ +++...+.++.+|..++.+... -|..+.+ ...++.+ ..++.... +.
T Consensus 140 ---p~~l~~l~~~~~~~~~~~~~~~~~~~~l~iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~ 216 (963)
T 2x19_B 140 ---PCAVADMVRLFQAEDSPVDGQGRCLALLELLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPS 216 (963)
T ss_dssp ---TTHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCH
T ss_pred ---chHHHHHHHHHhhhccCCCcHHHHHHHHHHHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence 2578888888876 3566788888888888742100 1111110 0123333 33333322 22
Q ss_pred HHHHHHHHHHHHhhcCCCCCC--------------ChhHHhhHHHHHHhhcccCCchh---hHH-HHHHHhhhChhhHHh
Q psy12605 189 SFLRNVTWVIVNLCRNKDPPP--------------SMSTIIELLPALNILIHHHDTSV---SIY-LWLSIIEKNPQISKI 250 (845)
Q Consensus 189 ~~~~~a~~~L~~l~~~~~~~~--------------~~~~~~~~l~~L~~ll~~~~~~~---~~~-~~~~l~~~~~~~~~~ 250 (845)
.+...+..++.....-..... .......++..+..++....+.- .+. .+..+....+.+...
T Consensus 217 ~~~~~~l~~l~~wi~~~~~~~~~~~ll~~l~~~l~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 296 (963)
T 2x19_B 217 CVRQKVLKCFSSWVQLEVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAISQPDAQRYVNTLLKLIPLVLGLQEQLRQA 296 (963)
T ss_dssp HHHHHHHHHHHHHHTSSCCGGGTHHHHHHHHHHTTSTTTHHHHHHHHHHHHTCTTGGGCHHHHHHHHHHHHTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCcccchHHHHHHHHHhCCchHHHHHHHHHHHHHcccccccCHHHHHHHHHHHHhhHHHHHHH
Confidence 366666666654333111000 01122345555555554322110 000 001111111111000
Q ss_pred hh-hhHHHHHHHHHHHHHhhcCChhhHHHHHh--------cCchhhHHhhccC-----CchhhHHHHHHHHHHHhcCC--
Q psy12605 251 LV-SKMKILVDTVWALSYLTDGGNDQIQMVID--------SGVVPSLIPLLSH-----KEVKVQTASLRAVGNIVTGT-- 314 (845)
Q Consensus 251 ~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--------~g~i~~Lv~lL~~-----~~~~v~~~al~~L~nl~~~~-- 314 (845)
.. .+.......+..+..+..... ..+.+ ..+++.++....+ .++.+...++..+.+++...
T Consensus 297 ~~~~d~~~~~~~~~l~~~~~~~~~---~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~ 373 (963)
T 2x19_B 297 VQNGDMETSHGICRIAVALGENHS---RALLDQVEHWQSFLALVNMIMFCTGIPGHYPVNETTSSLTLTFWYTLQDDILS 373 (963)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHH---HHHHHCGGGHHHHHHHHHHHHHHHTCSSCTTTTCGGGGGGHHHHHHHHHHHTT
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhH---HHHHcCccchHHHHHHHHHHHHHHcCCCCCCchhhhhhhhHHHHHHHHHHHHh
Confidence 00 011122333344433332111 11110 1334444444443 35567777788877776521
Q ss_pred ------hhhHHHHhc--CCccchhhHhhcCCch---------------hhHHHHHHHHHHhhcCChHHHHHHHhcCChHH
Q psy12605 315 ------DEQTQVILN--CDALSHFPALLTHPKE---------------KICKEAVWFLSNITAGNQAQVQAVIDAGLLPK 371 (845)
Q Consensus 315 ------~~~~~~i~~--~~~l~~L~~lL~~~~~---------------~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 371 (845)
+.....+.. ...++.++..+..+++ +.|..+..+|..++.. .....++.
T Consensus 374 ~~~~~~~~~~~~~~~~l~~l~~~ll~~~~~p~~~~~~~~~~de~~~~~~~r~~~~~~L~~~~~~--------~~~~~l~~ 445 (963)
T 2x19_B 374 FEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEM--------LGAELLSN 445 (963)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHH--------HTHHHHHH
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCCcccccCCChhHHHHHHHHHHHHHHHHHHHHHH--------ccHHHHHH
Confidence 111111110 0123344444432211 1234444455444321 11123333
Q ss_pred HHHHhhhcc---cccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhh---CCCCHHHHHHHHHHHHHhhcCC
Q psy12605 372 IIANLQKVG---RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL---MSPHSNVCEQAVWALGNIIGDG 445 (845)
Q Consensus 372 Lv~lL~~~~---~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL---~~~~~~v~~~a~~~L~nl~~~~ 445 (845)
+.+.+...- ....++..+..++++++.++.+..+.. ...++.++..+ .++++.++..++|+++.++..-
T Consensus 446 ~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~~~~~~-----~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l 520 (963)
T 2x19_B 446 LYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAETIDVNY-----SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWL 520 (963)
T ss_dssp HHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTSCCSSC-----CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhhcCchh-----hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 333332110 011478889999999999987643211 11223333333 3357889999999999988531
Q ss_pred hHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 446 ~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
....+ .-..+++.++..+.+ ..+...+++++.++|...
T Consensus 521 ~~~~~--~l~~vl~~l~~~l~~---~~V~~~A~~al~~l~~~~ 558 (963)
T 2x19_B 521 ADHPV--MINSVLPLVLHALGN---PELSVSSVSTLKKICREC 558 (963)
T ss_dssp HHCHH--HHTTTHHHHHHHTTC---GGGHHHHHHHHHHHHHHT
T ss_pred HhCHH--HHHHHHHHHHHHhCC---chHHHHHHHHHHHHHHHH
Confidence 11111 123677888888754 578889999999998643
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=98.05 E-value=5.8e-07 Score=81.10 Aligned_cols=122 Identities=16% Similarity=0.118 Sum_probs=92.2
Q ss_pred hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 281 ~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
....++.++.+|.++++.++..|+.+|+.+.. ..++.|+.+|+++++.+|..|+++|+++.. +
T Consensus 10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp -----------CCSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 44677889999999999999999999887621 125889999999999999999999999832 1
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 440 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~n 440 (845)
..++.|+..+.+ .++.++..|+++|+.+.. ...++.|..+++++++.|+..|+++|++
T Consensus 73 ------~a~~~L~~~L~d-----~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~ 130 (131)
T 1te4_A 73 ------RAVEPLIKLLED-----DSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET 130 (131)
T ss_dssp ------HHHHHHHHHHHH-----CCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred ------HHHHHHHHHHcC-----CCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 247888899976 489999999999999852 2357889999999999999999999876
Q ss_pred h
Q psy12605 441 I 441 (845)
Q Consensus 441 l 441 (845)
|
T Consensus 131 i 131 (131)
T 1te4_A 131 H 131 (131)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.99 E-value=2.3e-05 Score=79.05 Aligned_cols=191 Identities=16% Similarity=0.235 Sum_probs=135.5
Q ss_pred HHHhhccCCChhHHHHHHHHHHH-HhcCChhhHHHHHH-cCChHHHHHhh-CCCChhHHHHHHHHHHHhcCCC--hhhH-
Q psy12605 93 LVECLERSDRPNLQFEAAWALTN-IASGTSAQTQEVVA-AGAVPLFLRLL-MSPHSNVCEQAVWALGNIIGDG--PQLR- 166 (845)
Q Consensus 93 Lv~lL~~~~~~~i~~~a~~~L~~-la~~~~~~~~~i~~-~g~i~~L~~lL-~s~~~~v~~~a~~~L~nla~~~--~~~r- 166 (845)
+.+.+ .+.+...|..|+..|.. +..++++....-.+ ...+..|.+.+ ++++..++..|+.+|+.++..- +.+.
T Consensus 21 f~~~l-~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~ 99 (249)
T 2qk1_A 21 FQERI-TSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSK 99 (249)
T ss_dssp HHHHH-TCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCH
T ss_pred HHHHh-hcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccH
Confidence 34556 45677889999999999 87543332200001 13577888888 7889999999999999998422 1222
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
..... .+|.++..+.+. ...++..+..++..++..-++.........+++.|...+.+.++.
T Consensus 100 ~y~~~--llp~ll~~l~dk-k~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~--------------- 161 (249)
T 2qk1_A 100 DYVSL--VFTPLLDRTKEK-KPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQ--------------- 161 (249)
T ss_dssp HHHHH--HHHHHHHGGGCC-CHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHH---------------
T ss_pred HHHHH--HHHHHHHHHcCC-CHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChH---------------
Confidence 22222 578888888776 457899999999999986533111111457888899999888887
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCCh---hhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhc
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGN---DQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~ 312 (845)
++..++.+|..+..... ......+...+++.+.+++.++++.+|..|..+++.++.
T Consensus 162 ----------vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~ 220 (249)
T 2qk1_A 162 ----------IRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIK 220 (249)
T ss_dssp ----------HHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred ----------HHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 88889888888775443 222233336889999999999999999999999999863
|
| >1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.5e-06 Score=78.33 Aligned_cols=109 Identities=16% Similarity=0.168 Sum_probs=79.5
Q ss_pred cCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH
Q psy12605 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 166 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r 166 (845)
...++.|+.+|+ ++++.+|..|+++|..+... .++.|+++|+++++.+|..|+++|+++.. +
T Consensus 11 ~~~~~~l~~~L~-~~~~~vR~~A~~~L~~~~~~------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~--- 72 (131)
T 1te4_A 11 SSGLVPRGSHMA-DENKWVRRDVSTALSRMGDE------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E--- 72 (131)
T ss_dssp ----------CC-SSCCCSSSSCCSSTTSCSST------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---
T ss_pred cccHHHHHHHhc-CCCHHHHHHHHHHHHHhCch------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H---
Confidence 346888999994 67889999999988876431 36899999999999999999999999863 1
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
..++.|+.++.++ +..++..|+++|.++.. ...++.|..++.++++.
T Consensus 73 ------~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~ 119 (131)
T 1te4_A 73 ------RAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGF 119 (131)
T ss_dssp ------HHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTH
T ss_pred ------HHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHH
Confidence 1377888888765 44899999999998852 35788899999888887
|
| >2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=6.6e-05 Score=75.63 Aligned_cols=193 Identities=10% Similarity=0.078 Sum_probs=131.9
Q ss_pred HHHhhCCCChhHHHHHHHHHHH-hcCCChhhHHHHHh-cCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC-CCCChh
Q psy12605 136 FLRLLMSPHSNVCEQAVWALGN-IIGDGPQLRDYVIN-MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD-PPPSMS 212 (845)
Q Consensus 136 L~~lL~s~~~~v~~~a~~~L~n-la~~~~~~r~~i~~-~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~ 212 (845)
+.+.+.+++..-|..|+..|.. +...++.......+ ...+..|...+..+.+..++..|+.+|..++.+-. +.-...
T Consensus 21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~ 100 (249)
T 2qk1_A 21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD 100 (249)
T ss_dssp HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence 4566788899999999999999 87443322100000 02355666777445466889999999999997653 222113
Q ss_pred HHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhc
Q psy12605 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLL 292 (845)
Q Consensus 213 ~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL 292 (845)
.....+|.++..+.+..+. ++..+..++..+....+.....-.-..+++.|...|
T Consensus 101 y~~~llp~ll~~l~dkk~~-------------------------V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l 155 (249)
T 2qk1_A 101 YVSLVFTPLLDRTKEKKPS-------------------------VIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHM 155 (249)
T ss_dssp HHHHHHHHHHHGGGCCCHH-------------------------HHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHH-------------------------HHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHH
Confidence 5567889999988877776 777777777666543211000000013567788889
Q ss_pred cCCchhhHHHHHHHHHHHhcCChh---hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhh
Q psy12605 293 SHKEVKVQTASLRAVGNIVTGTDE---QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 293 ~~~~~~v~~~al~~L~nl~~~~~~---~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 353 (845)
.++++.++..++.+|+.++..... .....+....+|.+.+++.+.+.++|..|..++..++
T Consensus 156 ~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~ 219 (249)
T 2qk1_A 156 KHKTPQIRMECTQLFNASMKEEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILI 219 (249)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999999999999999999865432 1112222468899999999999999999999999873
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.90 E-value=0.07 Score=64.76 Aligned_cols=359 Identities=12% Similarity=0.094 Sum_probs=175.1
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHH-HhhccCCChhHHHHHHHHHHHHhcCC---h--hhHHHHHH
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLV-ECLERSDRPNLQFEAAWALTNIASGT---S--AQTQEVVA 129 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~i~~~a~~~L~~la~~~---~--~~~~~i~~ 129 (845)
+.+++....++.++...++- .+...+++.++++.+. .+|. +++.+..|+.+|..+.+.. + +.-..+..
T Consensus 206 ~~~~~l~~~~L~~l~s~l~W---I~i~~i~~~~ll~~l~~~~L~---~~~~r~~A~ecL~eIv~~~~~~~~~~~~~~l~~ 279 (1023)
T 4hat_C 206 GASSSLIVATLESLLRYLHW---IPYRYIYETNILELLSTKFMT---SPDTRAITLKCLTEVSNLKIPQDNDLIKRQTVL 279 (1023)
T ss_dssp CSSCHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHTHHHH---SHHHHHHHHHHHHHHHTSCCCSSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHh---CCHHHhcchhHHHHHHHHHcC---CHHHHHHHHHHHHHHHccccCCchHHHHHHHHH
Confidence 45667777788888888762 3467788899999999 8883 5789999999999998632 1 11112211
Q ss_pred --cCChHHH--------------HHhhCCCChhHHHHHHHHHHHhcCC-------ChhhHHHHHhcCChhhHHhhhcCCC
Q psy12605 130 --AGAVPLF--------------LRLLMSPHSNVCEQAVWALGNIIGD-------GPQLRDYVINMGVVPPLLSFIKPDI 186 (845)
Q Consensus 130 --~g~i~~L--------------~~lL~s~~~~v~~~a~~~L~nla~~-------~~~~r~~i~~~g~i~~Lv~ll~~~~ 186 (845)
.+.++.+ ...-...+.+....-++.+..+... .+..+..+. .++..|+.+-..+
T Consensus 280 lf~~~l~~l~~~i~p~~~~l~~~~~~~~~~D~e~~~~l~~l~~~~~e~~~~li~~~~~~~~~l~--~~l~~Ll~~~~~~- 356 (1023)
T 4hat_C 280 FFQNTLQQIATSVMPVTADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLL--NAHQYLIQLSKIE- 356 (1023)
T ss_dssp HHHHHHHHHHHHTCCTTCCHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHGGGGTSCGGGHHHHH--HHHHHHHHHTTSS-
T ss_pred HHHHHHHHHHHHhCCCcchHHHHHhccccchHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHH--HHHHHHHHhhCCC-
Confidence 0111111 1111222455555555555444321 122122211 0122333333333
Q ss_pred CHHHHHHHHHHHHHhhcC--CCCCCC---hhHHhhHHHHHHhhcccCC------chhhHHHHHHHhhhChhhHHhhhhhH
Q psy12605 187 PISFLRNVTWVIVNLCRN--KDPPPS---MSTIIELLPALNILIHHHD------TSVSIYLWLSIIEKNPQISKILVSKM 255 (845)
Q Consensus 187 ~~~~~~~a~~~L~~l~~~--~~~~~~---~~~~~~~l~~L~~ll~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~~ 255 (845)
+.++...+...=..+... .++... .......++.+++.+..++ .+. .-|-..+..+..-...+.
T Consensus 357 d~ei~~~tl~FW~~L~~~l~~e~~~~~~~~~~~~~L~~vli~km~~P~e~~ive~d~--~~~~~e~~~d~d~~~~f~--- 431 (1023)
T 4hat_C 357 ERELFKTTLDYWHNLVADLFYEPLKKHIYEEICSQLRLVIIENMVRPEEVLVVENDE--GEIVREFVKESDTIQLYK--- 431 (1023)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTSTTTGGGGHHHHHHHHHHHHHSCCCCTTCCEEECTT--SCEEECSSCCGGGHHHHH---
T ss_pred cHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCCC--ccHHHHhccchHHHHHHH---
Confidence 445544443332223221 111111 1122345555555444332 010 000000000000000000
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC--CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHh
Q psy12605 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH--KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPAL 333 (845)
Q Consensus 256 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~l 333 (845)
..+ +++..+.++.. .+..+.+ ++.+...+.+ .+...+++++.++|.++.+-......-.-..+++.|+.+
T Consensus 432 ~~R-d~L~~l~~l~~--~~~~~~~-----~~~l~~~l~~~~~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l 503 (1023)
T 4hat_C 432 SER-EVLVYLTHLNV--IDTEEIM-----ISKLARQIDGSEWSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDL 503 (1023)
T ss_dssp HHH-HHHHHHHHHCH--HHHHHHH-----HHHHHHHHSSTTCCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHhccCH--HHHHHHH-----HHHHHHHhcCCCCCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHh
Confidence 011 33322222221 1222222 3344444443 578899999999999986643321111112467778887
Q ss_pred hcC-----CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHH
Q psy12605 334 LTH-----PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQ 408 (845)
Q Consensus 334 L~~-----~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~ 408 (845)
+.+ ....++..++|+++..+.--.. ....++.++..+-.... ++++.++..||+++.+++..+. .
T Consensus 504 ~~~~~~~d~k~~v~~t~~~~lGry~~wl~~------~~~~L~~vl~~L~~~l~-~~~~~v~~~A~~al~~l~~~c~---~ 573 (1023)
T 4hat_C 504 CVKKRGKDNKAVVASDIMYVVGQYPRFLKA------HWNFLRTVILKLFEFMH-ETHEGVQDMACDTFIKIVQKCK---Y 573 (1023)
T ss_dssp HHHCCSHHHHHHHHHHHHHHHHTCHHHHHH------CHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHHHHHHHHT---H
T ss_pred hhccccCcchHHHHHHHHHHHHHHHHHHhc------cHHHHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHHH---H
Confidence 753 2344566788999986431111 12234444444433210 0367899999999999997432 2
Q ss_pred HHHH----------cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh
Q psy12605 409 EVVA----------AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP 446 (845)
Q Consensus 409 ~l~~----------~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~ 446 (845)
.+.. ...+..+......-++.-+..+..+++.+....+
T Consensus 574 ~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~~~ 621 (1023)
T 4hat_C 574 HFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISEER 621 (1023)
T ss_dssp HHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTTCC
T ss_pred HhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCC
Confidence 2221 1122233444444566777788888888887543
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=97.88 E-value=0.019 Score=70.82 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=86.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-----C
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG-----T 120 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-----~ 120 (845)
+..++ ..+.+++...+.+|-..|..+-... +....+..+|..+.++.+|..|+.+|.+.... +
T Consensus 18 l~~~l-~~~~~p~~~~r~~Ae~~L~~~~~~p-----------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~ 85 (1049)
T 3m1i_C 18 LDQVV-STFYQGSGVQQKQAQEILTKFQDNP-----------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLP 85 (1049)
T ss_dssp HHHHH-HHHHHCCHHHHHHHHHHHHHHHHST-----------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSC
T ss_pred HHHHH-HHHhCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCC
Confidence 55666 5666777778888888887764332 24666778886677889999999999987642 2
Q ss_pred hhhHHHHHHcCChHHHHHhhCCC-----ChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHH
Q psy12605 121 SAQTQEVVAAGAVPLFLRLLMSP-----HSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194 (845)
Q Consensus 121 ~~~~~~i~~~g~i~~L~~lL~s~-----~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 194 (845)
++.+..+. ...+..+...-..+ ++.++.+.+.++..|+... ++. =.+.++.++..++. +...+..+
T Consensus 86 ~~~~~~ir-~~ll~~l~~~~~~~~~~~~~~~i~~kl~~~ia~Ia~~~~p~~-----Wp~ll~~L~~~~~~--~~~~~~~~ 157 (1049)
T 3m1i_C 86 NDHRIGIR-NFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-----WPEFIPELIGSSSS--SVNVCENN 157 (1049)
T ss_dssp HHHHHHHH-HHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHHTT--CHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHHhhCCccccchhhHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHHcc--ChHHHHHH
Confidence 33333333 23444444432222 3677888888888877431 100 01356777777762 33556677
Q ss_pred HHHHHHhhc
Q psy12605 195 TWVIVNLCR 203 (845)
Q Consensus 195 ~~~L~~l~~ 203 (845)
..+|..++.
T Consensus 158 l~~L~~l~e 166 (1049)
T 3m1i_C 158 MIVLKLLSE 166 (1049)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777777764
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0038 Score=75.67 Aligned_cols=325 Identities=14% Similarity=0.097 Sum_probs=167.8
Q ss_pred cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCC--hhhHHHHHHcCC
Q psy12605 55 RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGT--SAQTQEVVAAGA 132 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~--~~~~~~i~~~g~ 132 (845)
.+.++..+..++.++...++- .....+++.++++.+.++|. +++++..|+.+|..+.+.. ++.+..++..=.
T Consensus 203 ~~~~~~l~~~~L~~l~s~i~w---i~~~~i~~~~ll~~l~~~L~---~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~ 276 (980)
T 3ibv_A 203 NAKNYGTVGLCLQVYAQWVSW---ININLIVNEPCMNLLYSFLQ---IEELRCAACETMTEIVNKKMKPLEKLNLLNILN 276 (980)
T ss_dssp HTTCHHHHHHHHHHHHHHTTT---SCHHHHHCHHHHHHHHHHTT---SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhh---cCHHhhhcchHHHHHHHHcC---ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHh
Confidence 347788888999999988763 34677778889999999993 3799999999999998643 333333333201
Q ss_pred hHHHHHhhC--CCChhHHHHHHHHHHHhcC------CCh-----hhHHHHHh--cCChhhHHhhhcCCCCHHHHHHHHHH
Q psy12605 133 VPLFLRLLM--SPHSNVCEQAVWALGNIIG------DGP-----QLRDYVIN--MGVVPPLLSFIKPDIPISFLRNVTWV 197 (845)
Q Consensus 133 i~~L~~lL~--s~~~~v~~~a~~~L~nla~------~~~-----~~r~~i~~--~g~i~~Lv~ll~~~~~~~~~~~a~~~ 197 (845)
+...+..+. ..+.++.+..++.+..++. ..+ +.+..... .+.++.++.+..++ +.++...+...
T Consensus 277 L~~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~-~deVs~~t~~F 355 (980)
T 3ibv_A 277 LNLFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDD-YDETSTAVFPF 355 (980)
T ss_dssp HHHHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCS-SHHHHHTTHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCC-chhHHHHHHHH
Confidence 112222222 3566666554444433321 111 11111111 24788888888887 44666666555
Q ss_pred HHHhhcC----CC--CCCC--hhHHhhHHHHHHhhccc-CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 198 IVNLCRN----KD--PPPS--MSTIIELLPALNILIHH-HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 198 L~~l~~~----~~--~~~~--~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
+..+... .. .... .......++.+++-+.- ++.+... .--......+.. ++....+..+++..+
T Consensus 356 w~~~l~~~~~~~~~~~~~~~~~~~l~~Ll~~li~k~~yp~d~~~~~---~~d~ed~~~F~e-~Rk~l~~l~d~~~~l--- 428 (980)
T 3ibv_A 356 LSDLLVSLRKESSSKELSASLKEFLKSLLEAIIKKMKYDESQEWDD---DPDSEEEAEFQE-MRKKLKIFQDTINSI--- 428 (980)
T ss_dssp HHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHTTSCCTTCCCCC---CSSSSTHHHHHH-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhccccccccHHHHHHHHHHHHHHHHHccCCCcccccc---ccchhHHHHHHH-HHHHHHHHHHHHHhc---
Confidence 5554432 11 0111 12233444444444432 2211000 000000001111 111222222222222
Q ss_pred hcCChhh-HHHHHhcCchhhHHhhcc---CCchhhHHHHHHHHHHHhcCChhhHHHH-hcCCccchhhH----hhc----
Q psy12605 269 TDGGNDQ-IQMVIDSGVVPSLIPLLS---HKEVKVQTASLRAVGNIVTGTDEQTQVI-LNCDALSHFPA----LLT---- 335 (845)
Q Consensus 269 ~~~~~~~-~~~~~~~g~i~~Lv~lL~---~~~~~v~~~al~~L~nl~~~~~~~~~~i-~~~~~l~~L~~----lL~---- 335 (845)
.++. ...+. .-+.+.+...+. +.+...+++++.+|+.++.+-......+ -....+|.++. ++.
T Consensus 429 ---~~~~~l~~~~-~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~ 504 (980)
T 3ibv_A 429 ---DSSLFSSYMY-SAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVC 504 (980)
T ss_dssp ---CHHHHHHHHH-HHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTT
T ss_pred ---ChHHHHHHHH-HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCC
Confidence 1111 11110 011112223332 3457789999999999976532211111 01123444444 433
Q ss_pred -CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhh--cccccCChhHHHHHHHHHHHHhcCCh
Q psy12605 336 -HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK--VGRIVLRPNLQFEAAWALTNIASGTS 404 (845)
Q Consensus 336 -~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~--~~~~~~~~~v~~~a~~~L~~l~~~~~ 404 (845)
..++.++..++++++..+.--.. ....++.++..+-+ +- ...++.++..|+.++.+++....
T Consensus 505 ~~~hp~V~~~~~~~l~rys~~~~~------~~~~l~~~L~~ll~~~gl-~~~~~~V~~~a~~af~~f~~~~~ 569 (980)
T 3ibv_A 505 RHPHPLVQLLYMEILVRYASFFDY------ESAAIPALIEYFVGPRGI-HNTNERVRPRAWYLFYRFVKSIK 569 (980)
T ss_dssp TCCCHHHHHHHHHHHHHTGGGGGT------CCTTHHHHHHHHTSTTTT-TCCCTTTHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhc------CchhHHHHHHHHhccccc-cCCChhHHHHHHHHHHHHHHHhh
Confidence 56789999999999987443211 34677887777766 21 11357899999999999987543
|
| >4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0075 Score=73.22 Aligned_cols=234 Identities=13% Similarity=0.120 Sum_probs=125.7
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC-----
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASG----- 119 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~----- 119 (845)
.++.++ ..+.+++.+.+.+|-..|..+-... + ....+..+|..+.++.+|..|+.+|.+....
T Consensus 17 ~Le~av-~~ly~p~~~~r~~A~~~L~~~q~sp-~----------aw~~~~~iL~~s~~~~vR~faa~~Lk~~I~~~W~~L 84 (1023)
T 4hat_C 17 LLDQVV-STFYQGSGVQQKQAQEILTKFQDNP-D----------AWQKADQILQFSTNPQSKFIALSILDKLITRKWKLL 84 (1023)
T ss_dssp HHHHHH-HHHHHCCHHHHHHHHHHHHHHHHCT-T----------GGGGHHHHHHHCCCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred HHHHHH-HHHhCCChHHHHHHHHHHHHHHcCc-c----------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhcC
Confidence 356677 5666666667888888887764433 2 3555667776667889999999999887642
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCC-----ChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSP-----HSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRN 193 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~-----~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~ 193 (845)
+++.+..+ ....+..+.+.-.++ ..-++.+.+.++..++... |.. =.+.++.++.+++.+ ......
T Consensus 85 ~~e~~~~I-r~~Ll~~l~~~~~~~~~i~~~~~i~nKLa~~la~I~~~~~p~~-----Wp~~l~dL~~~l~~~--~~~~~~ 156 (1023)
T 4hat_C 85 PNDHRIGI-RNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQN-----WPEFIPELIGSSSSS--VNVCEN 156 (1023)
T ss_dssp CHHHHHHH-HHHHHHHHHHHHHSHHHHHHCHHHHHHHHHHHHHHHHHHTTTT-----CTTHHHHHHHHTTTC--HHHHHH
T ss_pred CHHHHHHH-HHHHHHHHHHhcCCcccccccHHHHHHHHHHHHHHHHHhChhh-----chHHHHHHHHHhcCC--HHHHHH
Confidence 23333333 334555555543332 2455666777777765321 100 013466666666543 233444
Q ss_pred HHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCCh
Q psy12605 194 VTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN 273 (845)
Q Consensus 194 a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 273 (845)
.+.+|..+++.- .. ....+.... . ...++......
T Consensus 157 ~L~iL~~L~EEV----------------~~-~~~~~l~~~---------r----------~~~lk~~l~~~--------- 191 (1023)
T 4hat_C 157 NMIVLKLLSEEV----------------FD-FSAEQMTQA---------K----------ALHLKNSMSKE--------- 191 (1023)
T ss_dssp HHHHHHHHHHHH----------------HT-SCTTTSCHH---------H----------HHHHHHHHHHH---------
T ss_pred HHHHHHHHHHHH----------------HH-hhhccchHH---------H----------HHHHHHHHHHH---------
Confidence 555555444321 00 000100000 0 00000000000
Q ss_pred hhHHHHHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhh-HhhcCCchhhHHHHHHHHHH
Q psy12605 274 DQIQMVIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFP-ALLTHPKEKICKEAVWFLSN 351 (845)
Q Consensus 274 ~~~~~~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~-~lL~~~~~~~~~~a~~~L~n 351 (845)
. ..+++.+...| ...++.+...++++++....--+ ...+.+...++.+. .++. ++..+..|+.+|..
T Consensus 192 --~-----~~I~~ll~~iL~~~~~~~l~~~~L~~l~s~l~WI~--i~~i~~~~ll~~l~~~~L~--~~~~r~~A~ecL~e 260 (1023)
T 4hat_C 192 --F-----EQIFKLCFQVLEQGASSSLIVATLESLLRYLHWIP--YRYIYETNILELLSTKFMT--SPDTRAITLKCLTE 260 (1023)
T ss_dssp --H-----HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTTSC--THHHHSSSHHHHHHTHHHH--SHHHHHHHHHHHHH
T ss_pred --H-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCC--HHHhcchhHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence 0 01122222233 13456777888888888765422 23456667778777 7775 46789999999999
Q ss_pred hhc
Q psy12605 352 ITA 354 (845)
Q Consensus 352 l~~ 354 (845)
+..
T Consensus 261 Iv~ 263 (1023)
T 4hat_C 261 VSN 263 (1023)
T ss_dssp HHT
T ss_pred HHc
Confidence 876
|
| >3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B | Back alignment and structure |
|---|
Probab=97.74 E-value=0.012 Score=72.54 Aligned_cols=220 Identities=10% Similarity=-0.002 Sum_probs=120.0
Q ss_pred CCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHH
Q psy12605 142 SPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPAL 221 (845)
Q Consensus 142 s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L 221 (845)
+++...|.+|-..|..+-.. + ++...+..++.++.+..+|..|+.+|.+..+..=..........+-..+
T Consensus 27 ~p~~~~r~~Ae~~L~~~~~~-p---------~~~~~l~~iL~~s~~~~vr~~aa~~Lk~~i~~~W~~l~~~~~~~ir~~l 96 (1049)
T 3m1i_C 27 QGSGVQQKQAQEILTKFQDN-P---------DAWQKADQILQFSTNPQSKFIALSILDKLITRKWKLLPNDHRIGIRNFV 96 (1049)
T ss_dssp HCCHHHHHHHHHHHHHHHHS-T---------TGGGGHHHHHHHCSCHHHHHHHHHHHHHHHHHTGGGSCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhCccCCHHHHHHHHHHH
Confidence 44555677777777665422 2 3456666666555577889999999998776431111112222333333
Q ss_pred HhhcccCC--chhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhh
Q psy12605 222 NILIHHHD--TSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKV 299 (845)
Q Consensus 222 ~~ll~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v 299 (845)
+.++.+.. +.. +..++ .++...+.+++.++..+-.. ...+.++.++..+. .++..
T Consensus 97 l~~l~~~~~~~~~--------~~~~~----------~i~~kl~~~ia~Ia~~~~p~----~Wp~ll~~L~~~~~-~~~~~ 153 (1049)
T 3m1i_C 97 VGMIISMCQDDEV--------FKTQK----------NLINKSDLTLVQILKQEWPQ----NWPEFIPELIGSSS-SSVNV 153 (1049)
T ss_dssp HHHHHHHHHCHHH--------HHHCH----------HHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHT-TCHHH
T ss_pred HHHHHhhCCcccc--------chhhH----------HHHHHHHHHHHHHHHHhCcc----cchHHHHHHHHHHc-cChHH
Confidence 33333211 100 00001 16666677777666431110 13466777888876 45556
Q ss_pred HHHHHHHHHHHhcCCh---------hhH----HHHhcC--CccchhhHhhc-CCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 300 QTASLRAVGNIVTGTD---------EQT----QVILNC--DALSHFPALLT-HPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 300 ~~~al~~L~nl~~~~~---------~~~----~~i~~~--~~l~~L~~lL~-~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+..++.+|..++..-. ..+ ..+.+. .+++.+..++. ..+..++..++.++.+...-.+ ...+
T Consensus 154 ~~~~l~~L~~l~eev~~~~~~~~~~~r~~~lk~~l~~~~~~i~~~~~~~l~~~~~~~~~~~aL~~l~~~l~wi~--~~~~ 231 (1049)
T 3m1i_C 154 CENNMIVLKLLSEEVFDFSAEQMTQAKALHLKNSMSKEFEQIFKLCFQVLEQGSSSSLIVATLESLLRYLHWIP--YRYI 231 (1049)
T ss_dssp HHHHHHHHHHHHHHHHTSCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC--THHH
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhCC--HHHH
Confidence 6777777777763211 001 112211 12333344443 3456788889998887644322 1335
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
.+..+++.+++.+.. ++.++..|+.+|..++..
T Consensus 232 ~~~~ll~~l~~~~l~------~~~~~~~a~~~L~~i~~~ 264 (1049)
T 3m1i_C 232 YETNILELLSTKFMT------SPDTRAITLKCLTEVSNL 264 (1049)
T ss_dssp HSSSHHHHHHTHHHH------SHHHHHHHHHHHHHHHHC
T ss_pred hhhhHHHHHHHHhCC------CHhHHHHHHHHHHHHHhC
Confidence 566677777643322 578999999999999864
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.46 E-value=0.0057 Score=72.51 Aligned_cols=147 Identities=13% Similarity=0.149 Sum_probs=107.2
Q ss_pred CchhhHHhhccCCchhhHHHHHHHHHHHhcCCh---hhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH-
Q psy12605 283 GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD---EQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA- 358 (845)
Q Consensus 283 g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~---~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~- 358 (845)
+++..+...+.+.... +.|+.++..++.... ..-..++ +.++.++..+.++...+|..|-.++..+...-+.
T Consensus 54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~ 129 (986)
T 2iw3_A 54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV 129 (986)
T ss_dssp HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence 5677777887666554 999999999985432 1212222 5788888888888899999888777776543322
Q ss_pred HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHH
Q psy12605 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438 (845)
Q Consensus 359 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 438 (845)
.. ..++|.|+..|.+. ..+..+..|+.++..++...++.. ...-...+|.+...+.+..++|..+|..++
T Consensus 130 a~-----~~~~~~~~~~~~~~----~kw~~k~~~l~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~ 199 (986)
T 2iw3_A 130 AI-----KALLPHLTNAIVET----NKWQEKIAILAAFSAMVDAAKDQV-ALRMPELIPVLSETMWDTKKEVKAAATAAM 199 (986)
T ss_dssp GH-----HHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHHSHHHH-HHHHHHHHHHHHHHTTCSSHHHHHHHHHHH
T ss_pred HH-----HHHHHHHHHHhccc----cchHHHHHHHHHHHHHHHHhHHHH-HHhccchhcchHhhcccCcHHHHHHHHHHH
Confidence 22 34688999999775 369999999999999997554332 222335789999999999999999888888
Q ss_pred HHhhc
Q psy12605 439 GNIIG 443 (845)
Q Consensus 439 ~nl~~ 443 (845)
..++.
T Consensus 200 ~~~~~ 204 (986)
T 2iw3_A 200 TKATE 204 (986)
T ss_dssp HHHGG
T ss_pred HHHHh
Confidence 77764
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0024 Score=65.00 Aligned_cols=184 Identities=9% Similarity=0.049 Sum_probs=132.9
Q ss_pred hHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHH-h
Q psy12605 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVI-D 365 (845)
Q Consensus 287 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~-~ 365 (845)
.+++-|.+.+.+.+..++.-|..+...+......++..+|+..|+.+....+.+.+..++.++.++..+. +...-++ .
T Consensus 122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v-~Gm~gvvs~ 200 (339)
T 3dad_A 122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFV-DGMLGVVAH 200 (339)
T ss_dssp HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSH-HHHHHHHHC
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhcc-ccccchhCC
Confidence 3445555667778889999999966677788899999999999999999999999999999999996653 3334444 4
Q ss_pred cCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHH--------c--CChHHHHHhhC---CCCHHHHH
Q psy12605 366 AGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVA--------A--GAVPLFLRLLM---SPHSNVCE 432 (845)
Q Consensus 366 ~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~--------~--g~i~~Lv~lL~---~~~~~v~~ 432 (845)
..+|..+..++.+ ....+...|...|..++..++.....+.+ . ...+.|+.+|. +.+.+++.
T Consensus 201 ~~fI~~lyslv~s-----~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~ 275 (339)
T 3dad_A 201 SDTIQWLYTLCAS-----LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV 275 (339)
T ss_dssp HHHHHHHHHGGGC-----SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred HHHHHHHHHHHcC-----ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence 6688888888885 47899999999999998766533322221 1 24788999997 78899999
Q ss_pred HHHHHHHHhhcCCh------HHHHHHHhCCChHHHHhccCCC-CChhHHHH
Q psy12605 433 QAVWALGNIIGDGP------QLRDYVINMGVVPPLLSFIKPD-IPISFLRN 476 (845)
Q Consensus 433 ~a~~~L~nl~~~~~------~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~~ 476 (845)
.|+..|-.+....+ +..+.+.+.|.-..+.+.++.. .+.+++++
T Consensus 276 ~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q 326 (339)
T 3dad_A 276 YTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ 326 (339)
T ss_dssp HHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred HHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence 98887766554322 2334444556555666667654 33344443
|
| >3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0035 Score=63.87 Aligned_cols=174 Identities=16% Similarity=0.182 Sum_probs=123.9
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH 336 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~ 336 (845)
.+..++..|..+-..+.+....++..+++..|+....+.+..++..++++++++-...+.....+-...++..+..++.+
T Consensus 134 ~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lyslv~s 213 (339)
T 3dad_A 134 ELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTLCAS 213 (339)
T ss_dssp HHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHHHcC
Confidence 66677888887544667788889999999999999999999999999999999976544333333355688899999998
Q ss_pred CchhhHHHHHHHHHHhhcCChHHHHHHHhc----------CChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh--
Q psy12605 337 PKEKICKEAVWFLSNITAGNQAQVQAVIDA----------GLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS-- 404 (845)
Q Consensus 337 ~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~----------~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~-- 404 (845)
.+..+.+.|+..|..++..++.....+.++ .-.+.|+..|...+. .+.+++..|...+..+..+.+
T Consensus 214 ~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~--~D~elq~~amtLIN~lL~~apd~ 291 (339)
T 3dad_A 214 LSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNG--ADPELLVYTVTLINKTLAALPDQ 291 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTS--CCHHHHHHHHHHHHHHHHHCSSH
T ss_pred ccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCC--CCHHHHHHHHHHHHHHHhcCCCh
Confidence 889999999999999987766544443321 237789999973211 378888888777776655333
Q ss_pred H----hHHHHHHcCChHHHHHhhCCC--CHHHHH
Q psy12605 405 A----QTQEVVAAGAVPLFLRLLMSP--HSNVCE 432 (845)
Q Consensus 405 ~----~~~~l~~~g~i~~Lv~lL~~~--~~~v~~ 432 (845)
+ ....+-+.|.-..+.+.+... ++++++
T Consensus 292 d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~ 325 (339)
T 3dad_A 292 DSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT 325 (339)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred hHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence 2 223333445555667767765 555554
|
| >3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.037 Score=67.02 Aligned_cols=314 Identities=12% Similarity=0.119 Sum_probs=161.0
Q ss_pred HhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC---ChhHHHHHHHHHHHhcCC-Chh----hH
Q psy12605 95 ECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP---HSNVCEQAVWALGNIIGD-GPQ----LR 166 (845)
Q Consensus 95 ~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~---~~~v~~~a~~~L~nla~~-~~~----~r 166 (845)
..+..+.+++.|.+|-..|..+-.. + +++.....+|.++ ++.+|-.|+.+|.+.... +++ -+
T Consensus 14 ~~~~p~sd~~~r~~A~~~L~~~q~s-p---------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~ 83 (980)
T 3ibv_A 14 AALDPSVGPIIKQQATDFIGSLRSS-S---------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLEL 83 (980)
T ss_dssp HHHCTTSCHHHHHHHHHHHHHHHHS-T---------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHH
T ss_pred HHhCCCCCHHHHHHHHHHHHHHHcC-h---------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHH
Confidence 3454445788899998888888654 3 3666777778664 678899999888866531 122 23
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCc-hhhHHHHHHHhhhCh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT-SVSIYLWLSIIEKNP 245 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~~~~ 245 (845)
..+.+ ..+..+...-....+..++...+.++..+....-+ . .....++.++.++...++ ......++.+..-+.
T Consensus 84 ~~lr~-~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p-~---~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~E 158 (980)
T 3ibv_A 84 QMIRD-SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP-S---NWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGD 158 (980)
T ss_dssp HHHHH-HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT-T---TCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc-c---cCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHH
Confidence 33322 23333333211123457888888888888775311 1 123567777777765443 211111222221111
Q ss_pred hhHHh--hhhhHHHHHHHHHHHHHhhcCChhhHHHHHh-------cCchhhHHhhccCCchhhHHHHHHHHHHHhcCChh
Q psy12605 246 QISKI--LVSKMKILVDTVWALSYLTDGGNDQIQMVID-------SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE 316 (845)
Q Consensus 246 ~~~~~--~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-------~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~ 316 (845)
++... ..+.+ .... ..+..+.+.+ .+++..|.....+.++.++..++++++.....-+
T Consensus 159 Ev~~~~~~~~~~-~~~r-----------~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~- 225 (980)
T 3ibv_A 159 EIADSLVLKTDV-QIQK-----------DNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN- 225 (980)
T ss_dssp HHCCCCSCCCHH-HHHH-----------HHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-
T ss_pred HHHhcccccCHH-HHhh-----------hHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-
Confidence 10000 00000 0000 0000111111 1222233333334677889999999999876432
Q ss_pred hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH--HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHH
Q psy12605 317 QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA--QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAW 394 (845)
Q Consensus 317 ~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~--~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~ 394 (845)
...+.+...++.+..++.+ ++++..|+.+|..+.....+ ....++.. + .+...+..-.....+.+.....+.
T Consensus 226 -~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~--l-~L~~~~~~l~~~~~D~d~~~~la~ 299 (980)
T 3ibv_A 226 -INLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNI--L-NLNLFFSKSQEQSTDPNFDEHVAK 299 (980)
T ss_dssp -HHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHH--H-HHHHHHCC-----CCHHHHHHHHH
T ss_pred -HHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHH--H-hHHHHHHHHhcccccHHHHHHHHH
Confidence 2345556778888888875 78999999999998765432 22222221 1 112222111000135555544444
Q ss_pred HHHHHh------cCCh-----HhHHHH--HHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 395 ALTNIA------SGTS-----AQTQEV--VAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 395 ~L~~l~------~~~~-----~~~~~l--~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
.+..++ ...+ +..... .-.+.++.++.++.+++.+|...+...+..+.
T Consensus 300 L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~~l 360 (980)
T 3ibv_A 300 LINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSDLL 360 (980)
T ss_dssp HHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 443322 1111 111111 11257888888888888888877666655544
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.011 Score=70.11 Aligned_cols=299 Identities=14% Similarity=0.142 Sum_probs=191.2
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh--h
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA--Q 123 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~--~ 123 (845)
+++++ +.+...+...+..|+..+..++...... ..+..+++..|.+.+....++ ..|+.++..+|..... .
T Consensus 16 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~k~~~---~~a~~~~~~~~~~~~~~~~ 88 (986)
T 2iw3_A 16 LEELF-QKLSVATADNRHEIASEVASFLNGNIIE---HDVPEHFFGELAKGIKDKKTA---ANAMQAVAHIANQSNLSPS 88 (986)
T ss_dssp HHHHH-HHHTTCCTTTHHHHHHHHHHHHTSSCSS---SSCCHHHHHHHHHHHTSHHHH---HHHHHHHHHHTCTTTCCTT
T ss_pred HHHHH-hhccccchhHHHHHHHHHHHHHhccccc---cccchhHHHHHHHHHhccCCH---HHHHHHHHHHHHhcCCCCC
Confidence 44566 5666655666778888888876643111 111236788888888422222 8888999999953311 2
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
....+ -+.+|.++..+.+....++..|-.++..+...- +.... ..+|.|+..+.....=..+..|+.++..|+
T Consensus 89 ~e~~~-~~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~~-----~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~ 162 (986)
T 2iw3_A 89 VEPYI-VQLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAIK-----ALLPHLTNAIVETNKWQEKIAILAAFSAMV 162 (986)
T ss_dssp THHHH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_pred cccch-HHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 22211 268999999999888899998887777766433 22222 247888888865544467788999999999
Q ss_pred cCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcC--ChhhHHHHH
Q psy12605 203 RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDG--GNDQIQMVI 280 (845)
Q Consensus 203 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~ 280 (845)
... +.+-......++|.+...+.+..++ +...|..++..++.. +.+.
T Consensus 163 ~~~-~~~~~~~~~~~~p~~~~~~~d~k~~-------------------------v~~~~~~~~~~~~~~~~n~d~----- 211 (986)
T 2iw3_A 163 DAA-KDQVALRMPELIPVLSETMWDTKKE-------------------------VKAAATAAMTKATETVDNKDI----- 211 (986)
T ss_dssp HHS-HHHHHHHHHHHHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHGGGCCCTTT-----
T ss_pred HHh-HHHHHHhccchhcchHhhcccCcHH-------------------------HHHHHHHHHHHHHhcCCCcch-----
Confidence 755 3333334557788888888887777 777777777666542 2221
Q ss_pred hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCC--hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcC--C
Q psy12605 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGT--DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAG--N 356 (845)
Q Consensus 281 ~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~--~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~--~ 356 (845)
...+|.|+..+.+++. ...++..|+.-+.-. +.-.-.+ ++|.|..-|......+++.++-++-|+|.- +
T Consensus 212 -~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~~----~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~ 284 (986)
T 2iw3_A 212 -ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLSI----MVPLLSRGLNERETGIKRKSAVIIDNMCKLVED 284 (986)
T ss_dssp -GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHHH----HHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCC
T ss_pred -hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHHH----HHHHHHhhhccCcchhheeeEEEEcchhhhcCC
Confidence 2457888888877743 333444444332211 1111111 457777777878888999999999999874 3
Q ss_pred hHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 357 QAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 357 ~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
+.....+ -..++|.|-+..... .+|++|..+..++..+.
T Consensus 285 ~~~~~~f-~~~l~p~~~~~~~~~----~~pe~r~~~~~a~~~l~ 323 (986)
T 2iw3_A 285 PQVIAPF-LGKLLPGLKSNFATI----ADPEAREVTLRALKTLR 323 (986)
T ss_dssp HHHHHHH-HTTTHHHHHHHTTTC----CSHHHHHHHHHHHHHHH
T ss_pred HHHHhhh-hhhhhhHHHHHhhcc----CCHHHHHHHHHHHHHHH
Confidence 3333332 345666666665555 68999999888888774
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=97.04 E-value=0.18 Score=61.06 Aligned_cols=227 Identities=10% Similarity=0.017 Sum_probs=122.7
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
.+..++..+.+++.+.|.+|-..|..+-. +++ +...+..++..+.+..++..|+.+|.+.....=..-..
T Consensus 29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~---------aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~ 98 (1073)
T 3gjx_A 29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPD---------AWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR 98 (1073)
T ss_dssp HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSC---------HHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-Cch---------HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence 45566667777778888888888877753 332 23444455655557788999999999877643111111
Q ss_pred hHHhhHHHHHHhhccc--CCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 212 STIIELLPALNILIHH--HDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
....+.-..++.++.. .++. .....+. ++...+.+++.++...-.. .-.+.++-++
T Consensus 99 e~~~~LR~~Ll~~l~~~~~~~~--------~~e~~~~----------vinKLa~~La~I~k~~~P~----~Wp~fi~dLv 156 (1073)
T 3gjx_A 99 NQCEGIKKYVVGLIIKTSSDPT--------CVEKEKV----------YIGKLNMILVQILKQEWPK----HWPTFISDIV 156 (1073)
T ss_dssp HHHHHHHHHHHHHHHHHHTCGG--------GGTSCHH----------HHHHHHHHHHHHHHHHTTT----TCTTHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCcc--------ccccchH----------HHHHHHHHHHHHHHHhChh----hccHHHHHHH
Confidence 2222222333333321 1110 0000011 4445555566555321000 0234555666
Q ss_pred hhccCCchhhHHHHHHHHHHHhcC---C--h----h----hHHHHhcCCccchhhHh----h-cCCchhhHHHHHHHHHH
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTG---T--D----E----QTQVILNCDALSHFPAL----L-THPKEKICKEAVWFLSN 351 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~---~--~----~----~~~~i~~~~~l~~L~~l----L-~~~~~~~~~~a~~~L~n 351 (845)
..+.. ++......+++|..++.. . . . .++.+.+. ++.++.+ + ...++.+...++.+|..
T Consensus 157 ~~~~~-~~~~~~~~L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~~--~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~ 233 (1073)
T 3gjx_A 157 GASRT-SESLCQNNMVILKLLSEEVFDFSSGQITQVKAKHLKDSMCNE--FSQIFQLCQFVMENSQNAPLVHATLETLLR 233 (1073)
T ss_dssp HHHHH-CHHHHHHHHHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHHT--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred HHhCC-CHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH--HHHHHHHHHHHhcccCCHHHHHHHHHHHHH
Confidence 66543 344566677777777643 0 0 0 11222222 3444444 3 33567777778888887
Q ss_pred hhcCChHHHHHHHhcCChHHH-HHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 352 ITAGNQAQVQAVIDAGLLPKI-IANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 352 l~~~~~~~~~~l~~~~~i~~L-v~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
...=-+ ...+++.++++.+ ..++. ++.++..|+.||+.+.+.
T Consensus 234 ~~sWI~--i~~i~~~~ll~~L~~~~L~-------~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 234 FLNWIP--LGYIFETKLISTLIYKFLN-------VPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp HTTTSC--THHHHSSSHHHHHHHHTSS-------SHHHHHHHHHHHHHHHHS
T ss_pred HHHhcC--HHHhccchHHHHHHHHhcC-------ChHHHHHHHHHHHHHHhc
Confidence 744322 2557778888877 45552 568999999999998764
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0037 Score=62.01 Aligned_cols=186 Identities=12% Similarity=0.070 Sum_probs=122.2
Q ss_pred HhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCC
Q psy12605 95 ECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGV 174 (845)
Q Consensus 95 ~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~ 174 (845)
+++ .++++.+|..++..| ....|..+++++++.++..++..| .
T Consensus 57 ~ll-~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------- 99 (244)
T 1lrv_A 57 QYL-ADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------- 99 (244)
T ss_dssp GGT-TCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C---------------
T ss_pred HHh-cCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C---------------
Confidence 444 567888988887743 133467788899999999988642 1
Q ss_pred hhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhh
Q psy12605 175 VPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSK 254 (845)
Q Consensus 175 i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 254 (845)
.+.+..+++.+ +..++..++..+ . .+.+..++.++++.
T Consensus 100 ~~~L~~ll~D~-d~~VR~~aA~~l------~------------~~~L~~L~~D~d~~----------------------- 137 (244)
T 1lrv_A 100 REQLSALMFDE-DREVRITVADRL------P------------LEQLEQMAADRDYL----------------------- 137 (244)
T ss_dssp SGGGGGTTTCS-CHHHHHHHHHHS------C------------TGGGGGGTTCSSHH-----------------------
T ss_pred HHHHHHHHcCC-CHHHHHHHHHhC------C------------HHHHHHHHcCCCHH-----------------------
Confidence 13455666655 557887777632 1 01355666677777
Q ss_pred HHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh
Q psy12605 255 MKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL 334 (845)
Q Consensus 255 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL 334 (845)
++..++..+ ..+.+..+++++++.|+..++..+ .-+.+..++
T Consensus 138 --VR~~aA~~l------------------~~~~l~~l~~D~d~~VR~~aa~~l------------------~~~ll~~ll 179 (244)
T 1lrv_A 138 --VRAYVVQRI------------------PPGRLFRFMRDEDRQVRKLVAKRL------------------PEESLGLMT 179 (244)
T ss_dssp --HHHHHHHHS------------------CGGGGGGTTTCSCHHHHHHHHHHS------------------CGGGGGGST
T ss_pred --HHHHHHHhc------------------CHHHHHHHHcCCCHHHHHHHHHcC------------------CHHHHHHHH
Confidence 666665421 123455677888999998887741 124566777
Q ss_pred cCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcC
Q psy12605 335 THPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG 414 (845)
Q Consensus 335 ~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g 414 (845)
.+++..+|..+...+ ..+.|..++.+ .++.|+..++..+.
T Consensus 180 ~D~d~~VR~aaa~~l------------------~~~~L~~Ll~D-----~d~~VR~~aa~~l~----------------- 219 (244)
T 1lrv_A 180 QDPEPEVRRIVASRL------------------RGDDLLELLHD-----PDWTVRLAAVEHAS----------------- 219 (244)
T ss_dssp TCSSHHHHHHHHHHC------------------CGGGGGGGGGC-----SSHHHHHHHHHHSC-----------------
T ss_pred cCCCHHHHHHHHHhC------------------CHHHHHHHHcC-----CCHHHHHHHHHcCC-----------------
Confidence 889999998887642 12456666666 47899988887642
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHH
Q psy12605 415 AVPLFLRLLMSPHSNVCEQAVWALG 439 (845)
Q Consensus 415 ~i~~Lv~lL~~~~~~v~~~a~~~L~ 439 (845)
.+.|..+ .++++.|+..+...|+
T Consensus 220 -~~~L~~L-~D~~~~VR~aa~~~L~ 242 (244)
T 1lrv_A 220 -LEALREL-DEPDPEVRLAIAGRLG 242 (244)
T ss_dssp -HHHHHHC-CCCCHHHHHHHHCCC-
T ss_pred -HHHHHHc-cCCCHHHHHHHHHHhC
Confidence 3556666 8889999988876543
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.13 Score=52.44 Aligned_cols=186 Identities=14% Similarity=0.124 Sum_probs=120.1
Q ss_pred HHHcCCChHHHHHHHHHHHHHHcCCCCccH-HHHH--hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh----hH
Q psy12605 52 EAARKDNPELQLLAVQSARKLLSSDKNPPI-EALI--HSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA----QT 124 (845)
Q Consensus 52 ~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~-~~i~--~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~----~~ 124 (845)
+.|.|.+...|..|+..+.+++........ +... -....+.+-..+ .+.|..++..++.+|..++..... ..
T Consensus 16 e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l-~DsN~~v~~~al~~l~~~~~~~~~~~~~~~ 94 (278)
T 4ffb_C 16 ERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYI-TDSNVVAQEQAIVALNSLIDAFASSSLKNA 94 (278)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHT-TCSSHHHHHHHHHHHHHHHTTCC---CCHH
T ss_pred HhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHhhhhhcccc
Confidence 688999999999999999998875432111 1111 124566677788 577889999999999988753211 11
Q ss_pred -HHHHHcCChHHHHH-hhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhh
Q psy12605 125 -QEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 202 (845)
Q Consensus 125 -~~i~~~g~i~~L~~-lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~ 202 (845)
....-...+|.|+. .|.++...++..|..++..++...... .. .++.++..+.+.++ .++..++..|.++.
T Consensus 95 ~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~-~~-----~~e~l~~~l~~Knp-kv~~~~l~~l~~~l 167 (278)
T 4ffb_C 95 HNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSI-TQ-----SVELVIPFFEKKLP-KLIAAAANCVYELM 167 (278)
T ss_dssp HHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSS-HH-----HHHHHGGGGGCSCH-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcH-HH-----HHHHHHHHHhccCH-HHHHHHHHHHHHHH
Confidence 11112346777775 588888999999998887776432111 11 24556666777654 67787777777766
Q ss_pred cCCCCC--CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 203 RNKDPP--PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 203 ~~~~~~--~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
...... ........+++.+..++.+.|+. ++..|..++..+-.
T Consensus 168 ~~fg~~~~~~k~~l~~i~~~l~k~l~d~~~~-------------------------VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 168 AAFGLTNVNVQTFLPELLKHVPQLAGHGDRN-------------------------VRSQTMNLIVEIYK 212 (278)
T ss_dssp HHHTTTTCCHHHHHHHHGGGHHHHHTCSSHH-------------------------HHHHHHHHHHHHHT
T ss_pred HHhCCCcCCchhHHHHHHHHHHHHHhCCcHH-------------------------HHHHHHHHHHHHHH
Confidence 542211 11223345666777888899998 88888888876654
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.023 Score=61.17 Aligned_cols=246 Identities=15% Similarity=0.124 Sum_probs=157.2
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccH-HHHHhcCCHHHHHHhhccC------CC---hhHHHHHHHHHH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPI-EALIHSGILPVLVECLERS------DR---PNLQFEAAWALT 114 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~-~~i~~~g~i~~Lv~lL~~~------~~---~~i~~~a~~~L~ 114 (845)
-.+.++ ..|-++..+.|..|+..||.++........ ....+.++.-+|+.+|.-+ ++ ..||..|+++|+
T Consensus 175 fcE~L~-~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQIS-DNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHH-HHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHH-HHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 566777 788899999999999999999875421000 0001114566666665322 11 258999999999
Q ss_pred HHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHH
Q psy12605 115 NIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV 194 (845)
Q Consensus 115 ~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a 194 (845)
.+ .+-++. ..++..|+..+..+..+++-.++-.|..+. + -..+ -.++++.++..|+.. +++++..|
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~-D--LL~~---Ld~Vv~aVL~GL~D~-DDDVRAVA 319 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYLK-E--FVED---KDGLCRKLVSLLSSP-DEDIKLLS 319 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG-G--GCCC---HHHHHHHHHHHTTCS-SHHHHHHH
T ss_pred HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHHH-H--HHHH---HHHHHHHHHhhcCCc-ccHHHHHH
Confidence 99 543332 345666666668888999999999999982 1 1111 123566777777766 67999999
Q ss_pred HHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCc-hhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCCh
Q psy12605 195 TWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT-SVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGN 273 (845)
Q Consensus 195 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~ 273 (845)
+.+|.-++. + .....++..+...+.+.|. .. -.......|+.+...+.
T Consensus 320 AetLiPIA~---p----~~l~~LL~iLWd~L~~LDDLSA------------------------STgSVMdLLAkL~s~p~ 368 (800)
T 3oc3_A 320 AELLCHFPI---T----DSLDLVLEKCWKNIESEELISV------------------------SKTSNLSLLTKIYRENP 368 (800)
T ss_dssp HHHHTTSCC---S----STHHHHHHHHHHHHHTCCSCCT------------------------THHHHHHHHHHHHHHCT
T ss_pred HHHhhhhcc---h----hhHHHHHHHHHHHhhhhcccch------------------------hhHHHHHHHHHHHcCCc
Confidence 999998881 1 2356777888877765432 21 11122223333332222
Q ss_pred hhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchh-hHhhcCCchhhHHHHHHHHH
Q psy12605 274 DQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHF-PALLTHPKEKICKEAVWFLS 350 (845)
Q Consensus 274 ~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L-~~lL~~~~~~~~~~a~~~L~ 350 (845)
. .......+|.|.+++.++-.+||.++++++..+. ... ++..+ -++|-..+++++..+..+..
T Consensus 369 ~---a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk 432 (800)
T 3oc3_A 369 E---LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK 432 (800)
T ss_dssp T---CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred c---cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 1 1113478999999999999999999999998886 111 22222 23445567788877766664
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.17 Score=50.46 Aligned_cols=178 Identities=13% Similarity=0.133 Sum_probs=107.6
Q ss_pred HHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhc---CCCCHHHHHHHHHHHHHhhc---CCCCC
Q psy12605 135 LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK---PDIPISFLRNVTWVIVNLCR---NKDPP 208 (845)
Q Consensus 135 ~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~---~~~~~~~~~~a~~~L~~l~~---~~~~~ 208 (845)
.+...|-+.+..-+..|+..|.....+.+ +.+.. .++.++..+. .+++..+...+..+|..+.. ..+..
T Consensus 50 ~~~~~lfs~d~k~~~~ale~L~~~l~~~~---~~~~~--~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~ 124 (266)
T 2of3_A 50 SLMSQLFHKDFKQHLAALDSLVRLADTSP---RSLLS--NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETP 124 (266)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHHHCH---HHHHH--THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHhhhCh---HHHHH--HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccc
Confidence 33444445555556666666655443222 22221 1233333221 12244566666666655432 22233
Q ss_pred CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhH
Q psy12605 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSL 288 (845)
Q Consensus 209 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L 288 (845)
-......-.+|.|+.-+.+.... ++..+-..+..+... .--..+++.+
T Consensus 125 ~~~~ea~~~lP~LveKlGd~k~~-------------------------vR~~~r~il~~l~~v-------~~~~~v~~~l 172 (266)
T 2of3_A 125 MSQEEVSAFVPYLLLKTGEAKDN-------------------------MRTSVRDIVNVLSDV-------VGPLKMTPML 172 (266)
T ss_dssp CCHHHHHHHHHHHHHGGGCSSHH-------------------------HHHHHHHHHHHHHHH-------HCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhCCChHH-------------------------HHHHHHHHHHHHHHH-------CCHHHHHHHH
Confidence 33334567889998888776666 555555555444321 1122356778
Q ss_pred HhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc---chhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 289 IPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL---SHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 289 v~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l---~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
+..+.+.+..++..++..++.+....+.. ...++ +.+..++.+.|..+|..|..++..+-.
T Consensus 173 ~~g~ksKN~R~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 173 LDALKSKNARQRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp HHGGGCSCHHHHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHccCCHHHHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 88889999999999999999997543222 23478 999999999999999999999987643
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.78 Score=44.58 Aligned_cols=189 Identities=13% Similarity=0.165 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhc-CchhhHHhh-------ccCCc-----hhhHHHHHHHHHHHhcCChhhHHHHhc
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDS-GVVPSLIPL-------LSHKE-----VKVQTASLRAVGNIVTGTDEQTQVILN 323 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~l-------L~~~~-----~~v~~~al~~L~nl~~~~~~~~~~i~~ 323 (845)
.++.|+..|+.=-+.-++..-.+... |.+..|++= +..+. ..-...|+..+..++++ ++.+..+++
T Consensus 17 ~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAsh-petr~~Fl~ 95 (268)
T 2fv2_A 17 TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASH-PETRSAFLA 95 (268)
T ss_dssp THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHC-TTTHHHHHH
T ss_pred hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcC-cchhhHHHH
Confidence 45566655554444334444444444 544444322 22221 22345777788888875 666888999
Q ss_pred CCccchhhHhhcCCc-----hhhHHHHHHHHHHhhc-CChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHH
Q psy12605 324 CDALSHFPALLTHPK-----EKICKEAVWFLSNITA-GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALT 397 (845)
Q Consensus 324 ~~~l~~L~~lL~~~~-----~~~~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~ 397 (845)
+++.-.|..+|+..+ +-+|-.++++++.+.. ++++.+..+++.+++|.+++.+..+ +.-.|..|..++.
T Consensus 96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G-----selSKtvAtfIlq 170 (268)
T 2fv2_A 96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG-----SELSKTVATFILQ 170 (268)
T ss_dssp TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-----CHHHHHHHHHHHH
T ss_pred ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-----cHHHHHHHHHHHH
Confidence 988888888885432 6789999999999765 4567778889999999999999986 7788899999999
Q ss_pred HHhcCChHhHHHHHH--------cCChH-HHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHH
Q psy12605 398 NIASGTSAQTQEVVA--------AGAVP-LFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVI 453 (845)
Q Consensus 398 ~l~~~~~~~~~~l~~--------~g~i~-~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~ 453 (845)
.+..++... .+++. ...+. .+..+.+.+++.+.+..+++--.++.+ +..|+.+.
T Consensus 171 KIL~dd~GL-~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn-~rar~aL~ 233 (268)
T 2fv2_A 171 KILLDDTGL-AYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN-PRAREALR 233 (268)
T ss_dssp HHHHSHHHH-HHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS-HHHHHHHH
T ss_pred HHhccchhH-HHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC-HHHHHHHH
Confidence 987654321 11111 11222 233445677888888888888888754 45555554
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=95.68 E-value=1.3 Score=47.19 Aligned_cols=110 Identities=14% Similarity=0.045 Sum_probs=81.6
Q ss_pred CChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHh
Q psy12605 101 DRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180 (845)
Q Consensus 101 ~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ 180 (845)
.++..++.|+..+...-+.-++.... ++..+++|+.+.+..+|.+|++.|..+|.+ +....+ .+.|++
T Consensus 40 g~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki-----aDvL~Q 107 (507)
T 3u0r_A 40 GGTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV-----ADILTQ 107 (507)
T ss_dssp SCHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH-----HHHHHH
T ss_pred CCHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH-----HHHHHH
Confidence 46789999999999998887887765 678899999999999999999999999987 343333 567889
Q ss_pred hhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 181 FIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 181 ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
+|+.+.+ .-...+-++|..+.+.+ ..+.+..+...+...++.
T Consensus 108 lLqtdd~-~E~~~V~~sL~sllk~D--------pk~tl~~lf~~i~~~~e~ 149 (507)
T 3u0r_A 108 LLQTDDS-AEFNLVNNALLSIFKMD--------AKGTLGGLFSQILQGEDI 149 (507)
T ss_dssp HTTCCCH-HHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHSCHH
T ss_pred HHhccch-HHHHHHHHHHHHHHhcC--------hHHHHHHHHHHHcccchH
Confidence 9987643 45556666777776654 245555555555445555
|
| >2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=95.58 E-value=0.22 Score=49.55 Aligned_cols=173 Identities=10% Similarity=0.088 Sum_probs=106.8
Q ss_pred CCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcC----CChhhHHHHHhcCCh
Q psy12605 100 SDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG----DGPQLRDYVINMGVV 175 (845)
Q Consensus 100 ~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~----~~~~~r~~i~~~g~i 175 (845)
+.+..-+..|+..|......+++......+. .++.+.--+.+++..+...++..|..+.. .+....+.-. .-.+
T Consensus 57 s~d~k~~~~ale~L~~~l~~~~~~~~~~lDl-l~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea-~~~l 134 (266)
T 2of3_A 57 HKDFKQHLAALDSLVRLADTSPRSLLSNSDL-LLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV-SAFV 134 (266)
T ss_dssp CSCHHHHHHHHHHHHHHHHHCHHHHHHTHHH-HHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH-HHHH
T ss_pred CCCHHHHHHHHHHHHHHhhhChHHHHHHHHH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchHHHH-HHHH
Confidence 4455666666666666543333222111110 12222223346688888888887777641 1111111000 1257
Q ss_pred hhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhH
Q psy12605 176 PPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKM 255 (845)
Q Consensus 176 ~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 255 (845)
|.|+.-+.+. ...+|..+-.++..++.-. ......+.+...+.+.+..
T Consensus 135 P~LveKlGd~-k~~vR~~~r~il~~l~~v~-------~~~~v~~~l~~g~ksKN~R------------------------ 182 (266)
T 2of3_A 135 PYLLLKTGEA-KDNMRTSVRDIVNVLSDVV-------GPLKMTPMLLDALKSKNAR------------------------ 182 (266)
T ss_dssp HHHHHGGGCS-SHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHGGGCSCHH------------------------
T ss_pred HHHHHHhCCC-hHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHccCCHH------------------------
Confidence 8888888776 4578888887777776422 1345777788888887777
Q ss_pred HHHHHHHHHHHHhhcCChhhHHHHHhcCch---hhHHhhccCCchhhHHHHHHHHHHHhc
Q psy12605 256 KILVDTVWALSYLTDGGNDQIQMVIDSGVV---PSLIPLLSHKEVKVQTASLRAVGNIVT 312 (845)
Q Consensus 256 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i---~~Lv~lL~~~~~~v~~~al~~L~nl~~ 312 (845)
++..++..+.++-....-. ....+ +.+..++.+++..||.+|+.++..+-.
T Consensus 183 -~R~e~l~~l~~li~~~G~~-----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~ 236 (266)
T 2of3_A 183 -QRSECLLVIEYYITNAGIS-----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFK 236 (266)
T ss_dssp -HHHHHHHHHHHHHHHHCSG-----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHhcCCC-----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHH
Confidence 8888888887765321111 23467 899999999999999999999997754
|
| >4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.36 Score=48.98 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=117.9
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhh--HHHHH-hcC-ChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCC
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL--RDYVI-NMG-VVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP 207 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~--r~~i~-~~g-~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~ 207 (845)
-+| |-.-|.+.+...|..|+..|..+....+.. .+... ..+ ..+.+-..+. +.+..++..++.++..++.....
T Consensus 11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~-DsN~~v~~~al~~l~~~~~~~~~ 88 (278)
T 4ffb_C 11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYIT-DSNVVAQEQAIVALNSLIDAFAS 88 (278)
T ss_dssp CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTT-CSSHHHHHHHHHHHHHHHTTCC-
T ss_pred cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHhhh
Confidence 345 567788999999999999988876443211 11111 112 2333445554 44678899999999988875532
Q ss_pred CCC-----hhHHhhHHHHHHh-hcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 208 PPS-----MSTIIELLPALNI-LIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 208 ~~~-----~~~~~~~l~~L~~-ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
... ......++|.|+. .+.+..+. ++..+..++..+....... .
T Consensus 89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~-------------------------~~~~a~~~l~~~~~~~~~~-~---- 138 (278)
T 4ffb_C 89 SSLKNAHNITLISTWTPLLVEKGLTSSRAT-------------------------TKTQSMSCILSLCGLDTSI-T---- 138 (278)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHTSSCCCHH-------------------------HHHHHHHHHHHHHHTSSSS-H----
T ss_pred hhcccchhHHHHHHHHHHHHHHHhcCccHH-------------------------HHHHHHHHHHHHHHhcCcH-H----
Confidence 221 1123456666664 35566665 7777777776555432211 1
Q ss_pred cCchhhHHhhccCCchhhHHHHHHHHHHHhcC--Chh-hHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 282 SGVVPSLIPLLSHKEVKVQTASLRAVGNIVTG--TDE-QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 282 ~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~--~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
.+++.+...+.+.++.++..++..|..+... ... .....+. .+++.+..++.+.++.+|..|..++..+..
T Consensus 139 -~~~e~l~~~l~~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~ 212 (278)
T 4ffb_C 139 -QSVELVIPFFEKKLPKLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK 212 (278)
T ss_dssp -HHHHHHGGGGGCSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHhccCHHHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 1245677788999999999999999988642 111 0111111 356778888999999999999999988744
|
| >3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A | Back alignment and structure |
|---|
Probab=95.37 E-value=7.1 Score=47.28 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHH-HhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 56 KDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLV-ECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 56 ~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv-~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
+.+++....++.+++.+++= .....+++.++++.|+ .+| ++++.+..|+.+|..+.+.
T Consensus 218 ~~~~~lv~~~L~~L~~~~sW---I~i~~i~~~~ll~~L~~~~L---~~~~~r~aA~dcL~eIv~k 276 (1073)
T 3gjx_A 218 SQNAPLVHATLETLLRFLNW---IPLGYIFETKLISTLIYKFL---NVPMFRNVSLKCLTEIAGV 276 (1073)
T ss_dssp CCCHHHHHHHHHHHHHHTTT---SCTHHHHSSSHHHHHHHHTS---SSHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCHHHhccchHHHHHHHHhc---CChHHHHHHHHHHHHHHhc
Confidence 45677777888999888663 2457788899999884 666 4678999999999998864
|
| >3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.27 Score=53.16 Aligned_cols=215 Identities=13% Similarity=0.084 Sum_probs=130.5
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHc--CChHHHHHhh--CC--------CChhHHHHHHHHHH
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAA--GAVPLFLRLL--MS--------PHSNVCEQAVWALG 156 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~--g~i~~L~~lL--~s--------~~~~v~~~a~~~L~ 156 (845)
+...|+.-| .++..++|..|+.+|+.+.+............ ...-.|+-+| +. ---.|||.|+.+||
T Consensus 175 fcE~L~~DL-Fdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG 253 (800)
T 3oc3_A 175 FFEQISDNL-LSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS 253 (800)
T ss_dssp TTHHHHHHT-TCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHh-cCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence 455566555 46778999999999999875322111000111 1222222222 11 12368999999999
Q ss_pred HhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHH
Q psy12605 157 NIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 236 (845)
Q Consensus 157 nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~ 236 (845)
.+ ..-+.- ..++..++..+..+ .=+++..++-.|..+ .+ -... ..+.++.+...+.+.|.+
T Consensus 254 aL-~hLp~e------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL-~D--LL~~---Ld~Vv~aVL~GL~D~DDD----- 314 (800)
T 3oc3_A 254 RI-YPLIGP------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL-KE--FVED---KDGLCRKLVSLLSSPDED----- 314 (800)
T ss_dssp HH-TTTSCS------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT-GG--GCCC---HHHHHHHHHHHTTCSSHH-----
T ss_pred HH-HhCChh------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH-HH--HHHH---HHHHHHHHHhhcCCcccH-----
Confidence 98 554432 23344455444444 335666677777777 11 1111 577888888999998888
Q ss_pred HHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC--CchhhHHHHHHHHHHHhcCC
Q psy12605 237 WLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH--KEVKVQTASLRAVGNIVTGT 314 (845)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~--~~~~v~~~al~~L~nl~~~~ 314 (845)
++..|+.+|.-++ .++.... ++..+...|.+ +-.......+..|+.++...
T Consensus 315 --------------------VRAVAAetLiPIA--~p~~l~~-----LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p 367 (800)
T 3oc3_A 315 --------------------IKLLSAELLCHFP--ITDSLDL-----VLEKCWKNIESEELISVSKTSNLSLLTKIYREN 367 (800)
T ss_dssp --------------------HHHHHHHHHTTSC--CSSTHHH-----HHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHC
T ss_pred --------------------HHHHHHHHhhhhc--chhhHHH-----HHHHHHHHhhhhcccchhhHHHHHHHHHHHcCC
Confidence 8888888888777 2222222 23344444432 12234455677777777654
Q ss_pred hhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhh
Q psy12605 315 DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 315 ~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 353 (845)
.. ...+...+|.|..++.+.-..+|..++.+|..+.
T Consensus 368 ~~---a~~dp~LVPRL~PFLRHtITSVR~AVL~TL~tfL 403 (800)
T 3oc3_A 368 PE---LSIPPERLKDIFPCFTSPVPEVRTSILNMVKNLS 403 (800)
T ss_dssp TT---CCCCSGGGGGTGGGGTCSSHHHHHHHHHHTTTCC
T ss_pred cc---cccChHHHHHHHhhhcCCcHHHHHHHHHHHHHHH
Confidence 21 1223378899999999999999999999998875
|
| >1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5 | Back alignment and structure |
|---|
Probab=94.78 E-value=0.014 Score=57.80 Aligned_cols=69 Identities=16% Similarity=0.111 Sum_probs=44.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHH
Q psy12605 48 MLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEV 127 (845)
Q Consensus 48 ~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i 127 (845)
+++..++.++++.++..|+..+ . ...|..++ .++++.+|..++..|.
T Consensus 53 ~l~~~ll~d~~~~VR~~AA~~l------~-------------~~~l~~L~-~D~~~~VR~~aA~~L~------------- 99 (244)
T 1lrv_A 53 HLAVQYLADPFWERRAIAVRYS------P-------------VEALTPLI-RDSDEVVRRAVAYRLP------------- 99 (244)
T ss_dssp GGGGGGTTCSSHHHHHHHHTTS------C-------------GGGGGGGT-TCSSHHHHHHHHTTSC-------------
T ss_pred HHHHHHhcCCCHHHHHHHHHhC------C-------------HHHHHHHc-cCcCHHHHHHHHHHCC-------------
Confidence 3332456788888888887743 1 12345666 4677788888775421
Q ss_pred HHcCChHHHHHhhCCCChhHHHHHHHH
Q psy12605 128 VAAGAVPLFLRLLMSPHSNVCEQAVWA 154 (845)
Q Consensus 128 ~~~g~i~~L~~lL~s~~~~v~~~a~~~ 154 (845)
.+.|..++++++..++..++..
T Consensus 100 -----~~~L~~ll~D~d~~VR~~aA~~ 121 (244)
T 1lrv_A 100 -----REQLSALMFDEDREVRITVADR 121 (244)
T ss_dssp -----SGGGGGTTTCSCHHHHHHHHHH
T ss_pred -----HHHHHHHHcCCCHHHHHHHHHh
Confidence 1356677777888888777763
|
| >2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.09 E-value=0.41 Score=46.51 Aligned_cols=144 Identities=15% Similarity=0.164 Sum_probs=101.5
Q ss_pred HHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhc-CChHhHHHHHHcCChHHHHHh
Q psy12605 344 EAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRL 422 (845)
Q Consensus 344 ~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~l~~~g~i~~Lv~l 422 (845)
+|+..|..++ ..++.+..++++++.--|..+|........-..+|..+.+.++.++. ++++....+.+.+.+|..++.
T Consensus 75 naLaLlQcvA-shpetr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLri 153 (268)
T 2fv2_A 75 NALALLQCVA-SHPETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRI 153 (268)
T ss_dssp HHHHHHHHHH-HCTTTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHH-cCcchhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHH
Confidence 3444445555 45777788999998888888887654322235788899999999986 667888899999999999999
Q ss_pred hCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhC-------CChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 423 LMSPHSNVCEQAVWALGNIIGDGPQLRDYVINM-------GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 423 L~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~-------g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
++.+++--+.-|...+..|..+.....-..... .++..++.-+..+.+..+.++++++...|+.+.
T Consensus 154 me~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ 226 (268)
T 2fv2_A 154 MESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP 226 (268)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH
T ss_pred HhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH
Confidence 999999999999999999887654332221111 133344444445555677777777777766544
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=93.82 E-value=2.7 Score=42.74 Aligned_cols=244 Identities=14% Similarity=0.120 Sum_probs=136.4
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh----hHHHHHhc-CChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ----LRDYVINM-GVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~----~r~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
..+...+.+..|+..|..=+-+.|..+..+..++-..... ..+.+... .++..|+..-.+ .++--.+...|.
T Consensus 72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~---~diAl~~G~mLR 148 (341)
T 1upk_A 72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES---PEIALNCGIMLR 148 (341)
T ss_dssp HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS---TTTHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhcc---chhHhHHHHHHH
Confidence 3455567899999999888888899999988888765432 12222221 122222222221 133344444444
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
...++.. ........+.+-.+.+.+..++ .++..+|..++..+-.........+
T Consensus 149 ecir~e~-la~~iL~~~~f~~fF~yv~~~~-------------------------FdiasDAf~TfkelLt~Hk~lvaef 202 (341)
T 1upk_A 149 ECIRHEP-LAKIILWSEQFYDFFRYVEMST-------------------------FDIASDAFATFKDLLTRHKLLSAEF 202 (341)
T ss_dssp HHHTSHH-HHHHHHHSGGGGHHHHHTTCSS-------------------------HHHHHHHHHHHHHHHHSSHHHHHHH
T ss_pred HHHHhHH-HHHHHhccHHHHHHHHHhcCCC-------------------------chHHHHHHHHHHHHHhccHHHHHHH
Confidence 4444331 1111111122222233333332 3388888888877644433333333
Q ss_pred Hhc---CchhhHHhhccCCchhhHHHHHHHHHHHhcCCh--hhH-HHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhh
Q psy12605 280 IDS---GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTD--EQT-QVILNCDALSHFPALLTHPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 280 ~~~---g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~--~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~ 353 (845)
... .++...-.+|.+++--++..+++.||.+..+.. ... ..+-+..-+..++.+|.+.+..++-+|..++.-.+
T Consensus 203 L~~nyd~Ff~~y~~Ll~S~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFV 282 (341)
T 1upk_A 203 LEQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFV 282 (341)
T ss_dssp HHHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeee
Confidence 333 356677788899998899999999999987632 222 33334467889999999999999999998887766
Q ss_pred cC---ChHHHHHHHhcCChHHHHHHhhhccccc-CChhHHHHHHHHHHHH
Q psy12605 354 AG---NQAQVQAVIDAGLLPKIIANLQKVGRIV-LRPNLQFEAAWALTNI 399 (845)
Q Consensus 354 ~~---~~~~~~~l~~~~~i~~Lv~lL~~~~~~~-~~~~v~~~a~~~L~~l 399 (845)
+. +++....++.. =..|++++.+-.... ++.....+-...+..|
T Consensus 283 ANP~K~~~I~~IL~~N--r~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I 330 (341)
T 1upk_A 283 ANPNKTQPILDILLKN--QAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQI 330 (341)
T ss_dssp HCSSCCHHHHHHHHHT--HHHHHHHHHHTTTTC-CCSHHHHHHHHHHHHH
T ss_pred eCCCCChHHHHHHHHH--HHHHHHHHHhCCCCCcchhhHHHHHHHHHHHH
Confidence 54 22333333332 245555555432111 2334444444444443
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=93.75 E-value=4.4 Score=40.94 Aligned_cols=140 Identities=16% Similarity=0.146 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhh-c
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALL-T 335 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL-~ 335 (845)
+...+...| ++--++++.+.-++..+++..+...+.-++.++..+..+.|...+... .....- -...+|.++..+ -
T Consensus 259 VvtR~FDLL-~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDak-sL~~t~-L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 259 VIIRTFDLL-GLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAK-ALAKTP-LENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHH-HHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCG-GGGTSC-CTTHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchH-HHhhcc-ccccchHHHHHhcc
Confidence 444555544 444577888888999999999999999999999999999998875332 111110 114677777777 4
Q ss_pred CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhccccc--CChhHHHHHHHHHHHH
Q psy12605 336 HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIV--LRPNLQFEAAWALTNI 399 (845)
Q Consensus 336 ~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~--~~~~v~~~a~~~L~~l 399 (845)
++++++.....+.|+|+.++.....+.-+..+.++.|...+....+.. .+..-+..||.+++|-
T Consensus 336 h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~ 401 (619)
T 3c2g_A 336 HPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC 401 (619)
T ss_dssp CCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred CCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence 678899999999999999999888888899999999998887653221 1233455567666664
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=93.15 E-value=2.1 Score=45.34 Aligned_cols=157 Identities=17% Similarity=0.127 Sum_probs=109.7
Q ss_pred HHHHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhcc----------CCChhHHHHHHHHHH
Q psy12605 46 LDMLVVEAARKDN-PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLER----------SDRPNLQFEAAWALT 114 (845)
Q Consensus 46 i~~lv~~~l~~~~-~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~----------~~~~~i~~~a~~~L~ 114 (845)
-..++ ..|.++- .......+..|+..+..++-.-++.++ .+++..|+.+|.. ..+...+..+..||.
T Consensus 68 P~~yi-~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLk 145 (383)
T 3eg5_B 68 AMMYI-QELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLK 145 (383)
T ss_dssp HHHHH-HHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHH
Confidence 44566 6666653 233445788888888776544457776 6678888888842 123478889999999
Q ss_pred HHhcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh-hh-HHHH----------HhcCChhhHHhh
Q psy12605 115 NIASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-QL-RDYV----------INMGVVPPLLSF 181 (845)
Q Consensus 115 ~la~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~-~~-r~~i----------~~~g~i~~Lv~l 181 (845)
.+.. +......++. .+++..|...|.++.+.++..++..|..+|.-+. .+ ...+ .+..-+..++..
T Consensus 146 almN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~ 224 (383)
T 3eg5_B 146 AFMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG 224 (383)
T ss_dssp HHTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHT
T ss_pred HHhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 9974 4556666665 6789999999999999999999999999886543 22 2222 233457778888
Q ss_pred hcCCCCHHHHHHHHHHHHHhhcCC
Q psy12605 182 IKPDIPISFLRNVTWVIVNLCRNK 205 (845)
Q Consensus 182 l~~~~~~~~~~~a~~~L~~l~~~~ 205 (845)
+......+.+..++..+-.+..+.
T Consensus 225 L~~~~~~e~~~~~m~lIN~li~~~ 248 (383)
T 3eg5_B 225 LKSGTSIALKVGCLQLINALITPA 248 (383)
T ss_dssp TSTTSCHHHHHHHHHHHHHHHTTC
T ss_pred HHccCcHHHHHHHHHHHHHHHcCC
Confidence 877656677777777776676655
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=92.95 E-value=1.8 Score=41.67 Aligned_cols=142 Identities=12% Similarity=0.009 Sum_probs=96.3
Q ss_pred HHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH-hhCCCChhHHHHHHHHHHHhcC-CChhhHHHHH
Q psy12605 93 LVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIG-DGPQLRDYVI 170 (845)
Q Consensus 93 Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~-lL~s~~~~v~~~a~~~L~nla~-~~~~~r~~i~ 170 (845)
+..-|-.++..++|..|+..|+.+ .... ..++.+.. +-..++-.|++.+..+++.++. ..++.
T Consensus 75 la~~L~~~~~deVR~~Av~lLg~~-~~~~---------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~----- 139 (240)
T 3l9t_A 75 LAFLAYQSDVYQVRMYAVFLFGYL-SKDK---------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK----- 139 (240)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHT-TTSH---------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-----
T ss_pred HHHHHHhCcchHHHHHHHHHHHhc-cCcH---------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-----
Confidence 344443566679999999988887 3211 24555555 5556778999999999999984 33321
Q ss_pred hcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHh
Q psy12605 171 NMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKI 250 (845)
Q Consensus 171 ~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~ 250 (845)
.++.+.....++ +..+|+.|+..+.-.+..... ......++|.+..+..+++.=
T Consensus 140 ---~l~~~~~W~~d~-n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~y------------------- 193 (240)
T 3l9t_A 140 ---ALPIIDEWLKSS-NLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEY------------------- 193 (240)
T ss_dssp ---THHHHHHHHHCS-SHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHH-------------------
T ss_pred ---HHHHHHHHhcCC-CHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHH-------------------
Confidence 456677777766 568999988776555543211 122345677776666555544
Q ss_pred hhhhHHHHHHHHHHHHHhhcCChhhHHHHHh
Q psy12605 251 LVSKMKILVDTVWALSYLTDGGNDQIQMVID 281 (845)
Q Consensus 251 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~ 281 (845)
|+....|.|..++..+++.+..+++
T Consensus 194 ------VrKSVan~LrD~SK~~Pd~V~~~~~ 218 (240)
T 3l9t_A 194 ------VRKSVGNALRDISKKFPDLVKIELK 218 (240)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHhhhCHHHHHHHHH
Confidence 8999999999999998887666544
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=92.84 E-value=1.6 Score=42.73 Aligned_cols=112 Identities=16% Similarity=0.132 Sum_probs=79.4
Q ss_pred HHHHHHHcCCC-hHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC----------CChhHHHHHHHHHHHH
Q psy12605 48 MLVVEAARKDN-PELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS----------DRPNLQFEAAWALTNI 116 (845)
Q Consensus 48 ~lv~~~l~~~~-~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~l 116 (845)
.++ ..|.+.. ++...+-+..|+..+..++-.-++.+ ..+++..|+.+|... .+...+..+..||..+
T Consensus 4 ~yi-~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkal 81 (233)
T 2f31_A 4 MYI-QELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 81 (233)
T ss_dssp HHH-HHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHH
Confidence 455 5565543 22234457777777776644445666 567888888888531 1346788999999999
Q ss_pred hcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 117 ASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 117 a~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
.. +......++. .+++..|...|.++++.++..++..|..+|..+
T Consensus 82 mn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~ 127 (233)
T 2f31_A 82 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 127 (233)
T ss_dssp TS-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCS
T ss_pred hC-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCC
Confidence 74 4555666665 578999999999999999999999999888654
|
| >3gs3_A Symplekin, LD45768P; helix-turn-helix heat repeat extended loop, transcription, protein binding; 2.40A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=92.48 E-value=8.9 Score=37.79 Aligned_cols=102 Identities=8% Similarity=0.042 Sum_probs=73.7
Q ss_pred cHHHHHHHHHcC-CChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAARK-DNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~~-~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+-+++ +.... ++ ..+...+...+.++-..+...... +++.++++- .+.+.++|+..+..+...+...++.
T Consensus 16 ~v~~ll-n~A~~~~~-~~kl~~L~qa~el~~~~dp~ll~~-----~l~~il~~~-~~~~~~vrk~~~~Fi~e~~~~k~~l 87 (257)
T 3gs3_A 16 KVVDWC-NELVIASP-STKCELLAKVQETVLGSCAELAEE-----FLESVLSLA-HDSNMEVRKQVVAFVEQVCKVKVEL 87 (257)
T ss_dssp HHHHHH-HHHTTCCH-HHHHHHHHHHHHHHTTTTGGGHHH-----HHHHHHGGG-GCSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHH-HHhhhcCc-HHHHHHHHHHHHHHHccCHhHHHH-----HHHHHHHhc-cCChHHHHHHHHHHHHHHHHHHHHH
Confidence 344555 33333 44 688889999999776543333344 478888875 5678899999999999998655544
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla 159 (845)
... .++.|..+|++.++.+...++.+..++-
T Consensus 88 ~~~-----~l~~L~~Ll~d~d~~V~K~~I~~~~~iY 118 (257)
T 3gs3_A 88 LPH-----VINVVSMLLRDNSAQVIKRVIQACGSIY 118 (257)
T ss_dssp HHH-----HHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred HHH-----HHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 433 6778889999889999998888877763
|
| >3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A | Back alignment and structure |
|---|
Probab=91.77 E-value=16 Score=39.13 Aligned_cols=122 Identities=13% Similarity=0.142 Sum_probs=77.3
Q ss_pred ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHh
Q psy12605 144 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNI 223 (845)
Q Consensus 144 ~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ 223 (845)
++..+.-|+..+.....+-|+.++. +|..+++++..+ +..+|..|+.-|..+|++. .......+|++
T Consensus 41 ~~k~K~LaaQ~I~kffk~FP~l~~~-----Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~~-------~i~kiaDvL~Q 107 (507)
T 3u0r_A 41 GTKEKRLAAQFIPKFFKHFPELADS-----AINAQLDLCEDE-DVSIRRQAIKELPQFATGE-------NLPRVADILTQ 107 (507)
T ss_dssp CHHHHHHHHHHHHHHGGGCGGGHHH-----HHHHHHHHHTCS-SHHHHHHHHHHGGGGCCTT-------CHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhhChhhHHH-----HHHHHHHHHhcc-cHHHHHHHHHhhHHHhhhh-------hhhhHHHHHHH
Confidence 4566666666666666666665554 345566666555 5679999999999999871 26788889999
Q ss_pred hcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHH
Q psy12605 224 LIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTAS 303 (845)
Q Consensus 224 ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~a 303 (845)
++..+++. -...+-++|..+-..++. +.+..+...+.++++.+|+.+
T Consensus 108 lLqtdd~~-------------------------E~~~V~~sL~sllk~Dpk--------~tl~~lf~~i~~~~e~~Rer~ 154 (507)
T 3u0r_A 108 LLQTDDSA-------------------------EFNLVNNALLSIFKMDAK--------GTLGGLFSQILQGEDIVRERA 154 (507)
T ss_dssp HTTCCCHH-------------------------HHHHHHHHHHHHHHHCHH--------HHHHHHHHHHHHSCHHHHHHH
T ss_pred HHhccchH-------------------------HHHHHHHHHHHHHhcChH--------HHHHHHHHHHcccchHHHHHH
Confidence 99987766 333444444444332221 223333334434567788888
Q ss_pred HHHHHHHh
Q psy12605 304 LRAVGNIV 311 (845)
Q Consensus 304 l~~L~nl~ 311 (845)
+..|..-.
T Consensus 155 lkFi~~kl 162 (507)
T 3u0r_A 155 IKFLSTKL 162 (507)
T ss_dssp HHHHHHHG
T ss_pred HHHHHHHH
Confidence 88876644
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.23 E-value=14 Score=37.48 Aligned_cols=174 Identities=11% Similarity=0.092 Sum_probs=100.0
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChH----HHHHhhCC-CChhHHHHHHHHHHHhcCCChh
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP----LFLRLLMS-PHSNVCEQAVWALGNIIGDGPQ 164 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~----~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~ 164 (845)
+..+.++++.. .+.+.-++..|+-++.+ +.....+.+.+.-. .+...+.+ ..+..+--++++++|+... +.
T Consensus 105 l~~l~kil~WP--~~~~fPvLDLlRl~~l~-p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~-~~ 180 (304)
T 3ebb_A 105 LQILWKAINCP--EDIVFPALDILRLSIKH-PSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVG-QA 180 (304)
T ss_dssp HHHHHHHHTSC--TTTCHHHHHHHHHHTTS-HHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGS-HH
T ss_pred HHHHHHHHcCC--HHhHHHHHHHHHHHHcC-ccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCC-ch
Confidence 56666766332 24566777777776653 55554444432222 33344433 3566788999999999854 56
Q ss_pred hHHHHHhc--CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhccc-CCchhhHHHHHHHh
Q psy12605 165 LRDYVINM--GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH-HDTSVSIYLWLSII 241 (845)
Q Consensus 165 ~r~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~-~~~~~~~~~~~~l~ 241 (845)
.++.+... .+++.+...+..+ +..++..++.++.|++-.............++..+..++.. .|++
T Consensus 181 g~~~l~~~~~~il~~~~~~~~~~-nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~E---------- 249 (304)
T 3ebb_A 181 GQKLMMSQRESLMSHAIELKSGS-NKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLE---------- 249 (304)
T ss_dssp HHHHHHHTHHHHHHHHHGGGSSC-CHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHH----------
T ss_pred hHHHHHHHHHHHHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHH----------
Confidence 77776642 2344444444433 56888889999999877431112223334455555555543 3444
Q ss_pred hhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhcc
Q psy12605 242 EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLS 293 (845)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~ 293 (845)
....++-+|.++...+.+..+....-|+-..+-.+.+
T Consensus 250 ---------------alyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~ 286 (304)
T 3ebb_A 250 ---------------ATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS 286 (304)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG
T ss_pred ---------------HHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh
Confidence 7777888888887666554444333344444444443
|
| >1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* | Back alignment and structure |
|---|
Probab=91.17 E-value=14 Score=37.51 Aligned_cols=207 Identities=10% Similarity=0.094 Sum_probs=139.8
Q ss_pred hhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChh----hHHHHHh-cCchhhHH
Q psy12605 215 IELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGND----QIQMVID-SGVVPSLI 289 (845)
Q Consensus 215 ~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~----~~~~~~~-~g~i~~Lv 289 (845)
.+.+..|+..+..-+-+ .+.++.....++.+.... ....+.+ ..++..|+
T Consensus 77 ~dll~~Li~~l~~L~fE-------------------------~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~ 131 (341)
T 1upk_A 77 SGLLSTLVADLQLIDFE-------------------------GKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLL 131 (341)
T ss_dssp HSHHHHHHHTGGGSCHH-------------------------HHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHH
T ss_pred hCHHHHHHHhcccCCch-------------------------hhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHH
Confidence 45666666666655555 667777777776654322 2233322 12223333
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcC--
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG-- 367 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~-- 367 (845)
..- .++++...+-..|+.+... +.....+...+.+-.+.+.+..++=++...|..++..+..........++..+
T Consensus 132 ~gY--e~~diAl~~G~mLRecir~-e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd 208 (341)
T 1upk_A 132 KGY--ESPEIALNCGIMLRECIRH-EPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYD 208 (341)
T ss_dssp HGG--GSTTTHHHHHHHHHHHHTS-HHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHH
T ss_pred Hhh--ccchhHhHHHHHHHHHHHh-HHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHH
Confidence 332 3455666666667766654 66667777777777788888888889999999999998776666666665533
Q ss_pred -ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh--H-hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 368 -LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS--A-QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 368 -~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~--~-~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
+....-+++.+ .+.-+++.+...|+.+..... . ..+++.+..-+..++.+|.+.+..++..|..++--+..
T Consensus 209 ~Ff~~y~~Ll~S-----~NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVA 283 (341)
T 1upk_A 209 RFFSEYEKLLHS-----ENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 283 (341)
T ss_dssp HHHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-----CcchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeee
Confidence 56667777766 489999999999999886533 2 34445555668889999999999999999999887776
Q ss_pred C---ChHHHHHHHh
Q psy12605 444 D---GPQLRDYVIN 454 (845)
Q Consensus 444 ~---~~~~~~~l~~ 454 (845)
+ ++.+.+.+..
T Consensus 284 NP~K~~~I~~IL~~ 297 (341)
T 1upk_A 284 NPNKTQPILDILLK 297 (341)
T ss_dssp CSSCCHHHHHHHHH
T ss_pred CCCCChHHHHHHHH
Confidence 3 4555555553
|
| >2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=90.44 E-value=3.6 Score=40.12 Aligned_cols=157 Identities=10% Similarity=0.097 Sum_probs=95.6
Q ss_pred CChhhHHHHHhcCchhhHHhhccC-----------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCch
Q psy12605 271 GGNDQIQMVIDSGVVPSLIPLLSH-----------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339 (845)
Q Consensus 271 ~~~~~~~~~~~~g~i~~Lv~lL~~-----------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 339 (845)
.+.+.++.+ ..+++..|+..|.. .+...+..+++||..+..........+....++..+...+.++++
T Consensus 32 ~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 110 (233)
T 2f31_A 32 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 110 (233)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSH
T ss_pred CCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCc
Confidence 344455555 45666677777621 134678889999999865544444444455788899999999999
Q ss_pred hhHHHHHHHHHHhhcCCh-HH-HHHH----------HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh---
Q psy12605 340 KICKEAVWFLSNITAGNQ-AQ-VQAV----------IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS--- 404 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~~-~~-~~~l----------~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~--- 404 (845)
.+|..++..|.-+|.... .. ...+ -+..-...+++.+.+. .+.+.+..+...+-.+..+.+
T Consensus 111 ~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~----~~~e~~~~~m~lIN~li~~~~dl~ 186 (233)
T 2f31_A 111 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG----TSIALKVGCLQLINALITPAEELD 186 (233)
T ss_dssp HHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT----SCHHHHHHHHHHHHHHHTTCCCHH
T ss_pred hHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcC----ChHHHHHHHHHHHHHHHCCCCCHH
Confidence 999999988887765432 11 1222 1223456677776543 345555554444444554433
Q ss_pred ---HhHHHHHHcCChHHHHHhhCCCCHHHHH
Q psy12605 405 ---AQTQEVVAAGAVPLFLRLLMSPHSNVCE 432 (845)
Q Consensus 405 ---~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 432 (845)
..+..+...|..+.+-.+=...++++..
T Consensus 187 ~R~~lR~ef~~~Gl~~il~~l~~~~~~~L~~ 217 (233)
T 2f31_A 187 FRVHIRSELMRLGLHQVLQELREIENEDMKV 217 (233)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHhccCCHHHHH
Confidence 2355666777777766665555655544
|
| >3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.67 E-value=3 Score=42.43 Aligned_cols=126 Identities=17% Similarity=0.099 Sum_probs=77.0
Q ss_pred CchhhHHHHHHHHHHHhcCChhhHHHHhcC--CccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHH
Q psy12605 295 KEVKVQTASLRAVGNIVTGTDEQTQVILNC--DALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKI 372 (845)
Q Consensus 295 ~~~~v~~~al~~L~nl~~~~~~~~~~i~~~--~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~L 372 (845)
..+..+..++++++|+... +..++.+... .+++.+...+.+.+..++..++..+.|++.........-....++..+
T Consensus 160 ~~p~n~ml~lR~l~NlF~~-~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l 238 (304)
T 3ebb_A 160 GKPANQLLALRTFCNCFVG-QAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLI 238 (304)
T ss_dssp SCHHHHHHHHHHHHHGGGS-HHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 3456789999999999766 3344544432 244455555556788999999999999865311100000011133444
Q ss_pred HHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC
Q psy12605 373 IANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS 425 (845)
Q Consensus 373 v~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~ 425 (845)
..++... .+++....+..+|++++..+.+........|....+-++...
T Consensus 239 ~~il~~~----~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~ 287 (304)
T 3ebb_A 239 STILEVV----QDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSV 287 (304)
T ss_dssp HHHHTTC----CCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGC
T ss_pred HHHHhcc----CCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhC
Confidence 4555443 588999999999999998766544444444444444444444
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.10 E-value=8.9 Score=47.52 Aligned_cols=303 Identities=11% Similarity=0.080 Sum_probs=154.7
Q ss_pred HHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhh--CCCChhHHHHHHHHHHHhcCC-----Chh
Q psy12605 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLL--MSPHSNVCEQAVWALGNIIGD-----GPQ 164 (845)
Q Consensus 92 ~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL--~s~~~~v~~~a~~~L~nla~~-----~~~ 164 (845)
.|-..+..+.++..|.+|-..|..+-.. + +++..+...| .+.+..+|..|+.+|.+.... +++
T Consensus 16 ~l~~~~~p~~~~~~r~~Ae~~L~~~~~~-p---------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~l~~e 85 (1204)
T 3a6p_A 16 AVTVMMDPNSTQRYRLEALKFCEEFKEK-C---------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRL 85 (1204)
T ss_dssp HHHHHHCTTCCHHHHHHHHHHHHHHHHH-C---------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGGSCHH
T ss_pred HHHHHhCCCCChHHHHHHHHHHHHHHhC-c---------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 3334443234567788888888877542 1 2445555544 345788999999999887532 344
Q ss_pred hHHHHHhcCChhhHHhhhcCC--CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhh
Q psy12605 165 LRDYVINMGVVPPLLSFIKPD--IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIE 242 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~ 242 (845)
.+..+.+ ..+..+....... .+..++..++.+++.+.+..-+ .. ....++.+++++.. ++.
T Consensus 86 ~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p-~~---Wp~ll~~L~~~~~~-~~~----------- 148 (1204)
T 3a6p_A 86 EKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWP-QH---WPDMLIELDTLSKQ-GET----------- 148 (1204)
T ss_dssp HHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHST-TT---CTTHHHHHHHHHHT-CHH-----------
T ss_pred HHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCc-cc---chHHHHHHHHHhcC-CHH-----------
Confidence 4444433 2333333321111 3567888889999998876422 22 34677888877765 333
Q ss_pred hChhhHHhhhhhHHHHHHHHHHHHHhhcC-------ChhhH----HHHHhc--CchhhHHhhccC---------------
Q psy12605 243 KNPQISKILVSKMKILVDTVWALSYLTDG-------GNDQI----QMVIDS--GVVPSLIPLLSH--------------- 294 (845)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~a~~~L~~l~~~-------~~~~~----~~~~~~--g~i~~Lv~lL~~--------------- 294 (845)
....++.+|..+.+. ..... +.+.+. .+++.+...+..
T Consensus 149 --------------~~e~~L~iL~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~ 214 (1204)
T 3a6p_A 149 --------------QTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQE 214 (1204)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTH
T ss_pred --------------HHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccch
Confidence 122222222222110 00000 011100 112222222211
Q ss_pred ----CchhhHHHHHHHHHHHhcCChhhHHHHhcCC--ccchhhHhhcCCchhhHHHHHHHHHHhhcCC--hHHHHHHHh-
Q psy12605 295 ----KEVKVQTASLRAVGNIVTGTDEQTQVILNCD--ALSHFPALLTHPKEKICKEAVWFLSNITAGN--QAQVQAVID- 365 (845)
Q Consensus 295 ----~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~--~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~--~~~~~~l~~- 365 (845)
++..++..+++++.+...--+. ..+.+.. .++.+..++. +++++..|+.+|..++... ++....++.
T Consensus 215 ~~~~~~~~l~~~aL~~l~~~l~Wi~~--~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~~~~~~~~~li~~ 290 (1204)
T 3a6p_A 215 SKAQANCRVGVAALNTLAGYIDWVSM--SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRKGKLEDRKPLMVL 290 (1204)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTTSCH--HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCCSCHHHHGGGGGG
T ss_pred hhhhhhHHHHHHHHHHHHHHHhccCH--HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCCCChhhHHHHHHH
Confidence 2345777888888876543221 1222322 5566665555 5779999999999998754 222222222
Q ss_pred --cCChHHHHHHhhhcc--c-ccCChhHHHHHHHHHHHHhcCChHhHHHHHH-----------cCChHHHHHhhCCCCHH
Q psy12605 366 --AGLLPKIIANLQKVG--R-IVLRPNLQFEAAWALTNIASGTSAQTQEVVA-----------AGAVPLFLRLLMSPHSN 429 (845)
Q Consensus 366 --~~~i~~Lv~lL~~~~--~-~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-----------~g~i~~Lv~lL~~~~~~ 429 (845)
...+..++....... . .+.+.++....+..+..+.. .... ++. .+.++.++.+..+++.+
T Consensus 291 l~~~~l~~l~~~~~~~~~~~~~e~d~e~~k~l~~ll~~lg~---~l~~-l~~~~~~~~~~~~l~~~l~~lL~~t~~~~~~ 366 (1204)
T 3a6p_A 291 FGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGN---QLCA-LLGADSDVETPSNFGKYLESFLAFTTHPSQF 366 (1204)
T ss_dssp GSHHHHHHHHHHHHTCCCCSCCHHHHHHHHHHHHHHHHHHH---HHHH-HHHTCSSCCCCTTHHHHHHHHHHHHTSSCHH
T ss_pred HhhHHHHHHHHHhhcCCCCCCccHHHHHHHHHHHHHHHHHH---HHHH-HHhccccccChhHHHHHHHHHHHHHhCccHH
Confidence 111334455432110 0 11235566666666666652 1221 221 13466777777788777
Q ss_pred HHHHHHHHHHHhhc
Q psy12605 430 VCEQAVWALGNIIG 443 (845)
Q Consensus 430 v~~~a~~~L~nl~~ 443 (845)
+-..++..-..+..
T Consensus 367 vs~~~l~fW~~ll~ 380 (1204)
T 3a6p_A 367 LRSSTQMTWGALFR 380 (1204)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHh
Confidence 77776654444443
|
| >3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B* | Back alignment and structure |
|---|
Probab=89.01 E-value=7.2 Score=41.19 Aligned_cols=158 Identities=10% Similarity=0.101 Sum_probs=98.2
Q ss_pred cCChhhHHHHHhcCchhhHHhhcc-----------CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCc
Q psy12605 270 DGGNDQIQMVIDSGVVPSLIPLLS-----------HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPK 338 (845)
Q Consensus 270 ~~~~~~~~~~~~~g~i~~Lv~lL~-----------~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~ 338 (845)
..+...++.+. .+++..|+..|. ..+...+..+++||+.+..........+-....+..|...+.+..
T Consensus 97 t~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~ 175 (383)
T 3eg5_B 97 SHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAV 175 (383)
T ss_dssp HSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTS
T ss_pred hCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCc
Confidence 34445556665 566777777773 123467888999999996544444444445578899999999999
Q ss_pred hhhHHHHHHHHHHhhcCCh-HH-HHHHH----------hcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH-
Q psy12605 339 EKICKEAVWFLSNITAGNQ-AQ-VQAVI----------DAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA- 405 (845)
Q Consensus 339 ~~~~~~a~~~L~nl~~~~~-~~-~~~l~----------~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~- 405 (845)
+.++..++..|.-+|.... .. ...++ +..-...++..+.+. .+.+.+..+...+-.+..+.++
T Consensus 176 ~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~----~~~e~~~~~m~lIN~li~~~~dl 251 (383)
T 3eg5_B 176 PNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG----TSIALKVGCLQLINALITPAEEL 251 (383)
T ss_dssp HHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTT----SCHHHHHHHHHHHHHHHTTCCCH
T ss_pred hHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHcc----CcHHHHHHHHHHHHHHHcCCCCH
Confidence 9999999999988876543 21 22221 233466777777654 3555555444444445554432
Q ss_pred -----hHHHHHHcCChHHHHHhhCCCCHHHHH
Q psy12605 406 -----QTQEVVAAGAVPLFLRLLMSPHSNVCE 432 (845)
Q Consensus 406 -----~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 432 (845)
.+..+...|..+.+-.+=..+++++..
T Consensus 252 ~~R~~lR~ef~~~Gl~~il~~lr~~~~~~L~~ 283 (383)
T 3eg5_B 252 DFRVHIRSELMRLGLHQVLQELREIENEDMKV 283 (383)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHTTSCCHHHHH
T ss_pred HHHHHHHHHHHHCChHHHHHHHhcCCChhHHH
Confidence 355666777777776644445555544
|
| >3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A* | Back alignment and structure |
|---|
Probab=88.17 E-value=15 Score=38.37 Aligned_cols=89 Identities=9% Similarity=0.158 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHh
Q psy12605 60 ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRL 139 (845)
Q Consensus 60 ~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~l 139 (845)
..+...+..++.++-+. ++. .-..+++.++++- .+.+.++|...+..|...+....+.... +++.|..+
T Consensus 40 ~~Kl~~L~q~~EL~l~~-dps----Ll~~fl~~il~f~-~d~~~~vRk~~a~FieEa~~~~~el~~~-----~l~~L~~L 108 (386)
T 3o2t_A 40 DSKITVLKQVQELIINK-DPT----LLDNFLDEIIAFQ-ADKSIEVRKFVIGFIEEACKRDIELLLK-----LIANLNML 108 (386)
T ss_dssp THHHHHHHHHHHHHHTT-CGG----GGGGGHHHHHGGG-GCSCHHHHHHHHHHHHHHHHHCGGGHHH-----HHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc-CHH----HHHHHHHHHHHhc-cCCcHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHH
Confidence 46888899999976543 221 2245799999987 5678899999999999998755555322 67788999
Q ss_pred hCCCChhHHHHHHHHHHHhc
Q psy12605 140 LMSPHSNVCEQAVWALGNII 159 (845)
Q Consensus 140 L~s~~~~v~~~a~~~L~nla 159 (845)
|.+.++.+...++.+.+++-
T Consensus 109 L~d~d~~V~K~~I~~~tslY 128 (386)
T 3o2t_A 109 LRDENVNVVKKAILTMTQLY 128 (386)
T ss_dssp HTCSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHHHHHHHHHHHHHHH
Confidence 99889999999988888874
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=87.52 E-value=8.7 Score=40.62 Aligned_cols=113 Identities=16% Similarity=0.127 Sum_probs=79.1
Q ss_pred HHHHHHHHcCCChH-HHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC----------CChhHHHHHHHHHHH
Q psy12605 47 DMLVVEAARKDNPE-LQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS----------DRPNLQFEAAWALTN 115 (845)
Q Consensus 47 ~~lv~~~l~~~~~~-~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~ 115 (845)
+.++ ..|.+.... ....-+..|+..+..++-.-++.+. .+++..|+.+|..- .+...+..++.||..
T Consensus 7 ~~yv-~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLka 84 (386)
T 2bnx_A 7 MMYI-QELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA 84 (386)
T ss_dssp HHHH-HHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHH
Confidence 3556 666655332 2234577777777766444456664 56788888887421 134678899999999
Q ss_pred HhcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 116 IASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 116 la~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
+.. +......++. .+++..|...|.++.+.++..++..|..+|..+
T Consensus 85 lmN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~ 131 (386)
T 2bnx_A 85 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILP 131 (386)
T ss_dssp HTS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCC
T ss_pred HhC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCC
Confidence 975 3555565555 578999999999999999999999998888654
|
| >3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=86.63 E-value=5.4 Score=38.44 Aligned_cols=142 Identities=12% Similarity=-0.003 Sum_probs=94.8
Q ss_pred hhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhH-hhcCCchhhHHHHHHHHHHhhc-CChHHHHHH
Q psy12605 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPA-LLTHPKEKICKEAVWFLSNITA-GNQAQVQAV 363 (845)
Q Consensus 286 ~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~l 363 (845)
+....+..++..++|..|+..|+.. ... ...++.+.. +-.+.+=.+++-++.++..++. ..++
T Consensus 74 ~la~~L~~~~~deVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe----- 138 (240)
T 3l9t_A 74 KLAFLAYQSDVYQVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK----- 138 (240)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT-----
T ss_pred HHHHHHHhCcchHHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH-----
Confidence 3344555777789999999999887 311 124555655 4456677889888888888764 2222
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
..++.+.....+ ++..+|+.|+..+.-.+...... .-..-+++.+-.+..+++.-|+.+..|.|..++.
T Consensus 139 ---~~l~~~~~W~~d-----~n~~VRR~Ase~~rpW~~~~~~k---~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK 207 (240)
T 3l9t_A 139 ---KALPIIDEWLKS-----SNLHTRRAATEGLRIWTNRPYFK---ENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK 207 (240)
T ss_dssp ---TTHHHHHHHHHC-----SSHHHHHHHHHHTCSGGGSTTTT---TCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHhcC-----CCHHHHHHHHHhhHHHhccchhh---cCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence 256777777777 48999999887765433221000 0001135666777788899999999999999999
Q ss_pred CChHHHHHHH
Q psy12605 444 DGPQLRDYVI 453 (845)
Q Consensus 444 ~~~~~~~~l~ 453 (845)
..|+....++
T Consensus 208 ~~Pd~V~~~~ 217 (240)
T 3l9t_A 208 KFPDLVKIEL 217 (240)
T ss_dssp TCHHHHHHHH
T ss_pred hCHHHHHHHH
Confidence 9987544443
|
| >3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.56 E-value=27 Score=43.23 Aligned_cols=140 Identities=11% Similarity=0.057 Sum_probs=85.4
Q ss_pred cHHHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhc-cCCChhHHHHHHHHHHHHhcC--
Q psy12605 45 NLDMLVVEAARKD--NPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLE-RSDRPNLQFEAAWALTNIASG-- 119 (845)
Q Consensus 45 ~i~~lv~~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~i~~~a~~~L~~la~~-- 119 (845)
.+..++ ....++ ++..+.+|-..|.++-... + ....+...|. .+.++.+|..|+.+|.+....
T Consensus 12 ~l~~~l-~~~~~p~~~~~~r~~Ae~~L~~~~~~p-~----------~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W 79 (1204)
T 3a6p_A 12 QLVKAV-TVMMDPNSTQRYRLEALKFCEEFKEKC-P----------ICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRW 79 (1204)
T ss_dssp HHHHHH-HHHHCTTCCHHHHHHHHHHHHHHHHHC-T----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSG
T ss_pred HHHHHH-HHHhCCCCChHHHHHHHHHHHHHHhCc-h----------HHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 366666 444444 6777888988887764332 1 3455555553 456789999999999987532
Q ss_pred ---ChhhHHHHHHcCChHHHHHhhCC---CChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHH
Q psy12605 120 ---TSAQTQEVVAAGAVPLFLRLLMS---PHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLR 192 (845)
Q Consensus 120 ---~~~~~~~i~~~g~i~~L~~lL~s---~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~ 192 (845)
+++.+..+. ..++..+...-.. ....++.+.+.++..|+... ++. =.+.++.++.+++.+ ...+.
T Consensus 80 ~~l~~e~k~~Ir-~~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~~-----Wp~ll~~L~~~~~~~--~~~~e 151 (1204)
T 3a6p_A 80 NGMSRLEKVYLK-NSVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQH-----WPDMLIELDTLSKQG--ETQTE 151 (1204)
T ss_dssp GGSCHHHHHHHH-HHHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHHHHHTC--HHHHH
T ss_pred ccCCHHHHHHHH-HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCccc-----chHHHHHHHHHhcCC--HHHHH
Confidence 334444333 3344444443211 35788888888888887431 100 013567777777653 35577
Q ss_pred HHHHHHHHhhcC
Q psy12605 193 NVTWVIVNLCRN 204 (845)
Q Consensus 193 ~a~~~L~~l~~~ 204 (845)
.++.+|..++..
T Consensus 152 ~~L~iL~~L~Ee 163 (1204)
T 3a6p_A 152 LVMFILLRLAED 163 (1204)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888888763
|
| >1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1 | Back alignment and structure |
|---|
Probab=85.64 E-value=26 Score=42.55 Aligned_cols=126 Identities=14% Similarity=0.196 Sum_probs=83.8
Q ss_pred HHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-------CchhhHHHHHHHHHHhhcCChHHH
Q psy12605 288 LIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-------PKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 288 Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-------~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
+.+.+...+..-+..++++|||+-.. ..++.|..++.. ....+|..|+++|.+++...+...
T Consensus 445 l~~~~~~~~~~~~~~~LkaLGN~g~p-----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p~~v 513 (1056)
T 1lsh_A 445 LSQSSDRAKEEEIVLALKALGNAGQP-----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKV 513 (1056)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHTCG-----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHH
T ss_pred HHHHHhcCChHHHHHHHHHhhccCCh-----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhchHHH
Confidence 34444556677788999999999432 234445555421 235688899999999987665543
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALG 439 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~ 439 (845)
-+.++++..+.. .++++|..|+..|..-.- +. ..+..+...+.. ++..|.......|.
T Consensus 514 --------~~il~~i~~n~~---e~~EvRiaA~~~Lm~t~P-~~---------~~l~~ia~~l~~E~~~QV~sfv~S~l~ 572 (1056)
T 1lsh_A 514 --------QEIVLPIFLNVA---IKSELRIRSCIVFFESKP-SV---------ALVSMVAVRLRREPNLQVASFVYSQMR 572 (1056)
T ss_dssp --------HHHHHHHHHCTT---SCHHHHHHHHHHHHHTCC-CH---------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred --------HHHHHHHhcCCC---CChHHHHHHHHHHHHHCc-CH---------HHHHHHHHHHhhCchHHHHHHHHHHHH
Confidence 345667775543 588999999888764211 11 124445556654 67889999999999
Q ss_pred HhhcCC
Q psy12605 440 NIIGDG 445 (845)
Q Consensus 440 nl~~~~ 445 (845)
+++...
T Consensus 573 sla~s~ 578 (1056)
T 1lsh_A 573 SLSRSS 578 (1056)
T ss_dssp HHTTCC
T ss_pred HHHhcC
Confidence 998755
|
| >2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B | Back alignment and structure |
|---|
Probab=85.01 E-value=14 Score=39.03 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=97.6
Q ss_pred ChhhHHHHHhcCchhhHHhhccC-----------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchh
Q psy12605 272 GNDQIQMVIDSGVVPSLIPLLSH-----------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEK 340 (845)
Q Consensus 272 ~~~~~~~~~~~g~i~~Lv~lL~~-----------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~ 340 (845)
+...++.+. .+++..|+..|.. .+......+++||..+..........+....++..+...+.+.++.
T Consensus 37 ~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~ 115 (386)
T 2bnx_A 37 PVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPN 115 (386)
T ss_dssp CHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHH
T ss_pred CcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCch
Confidence 334445553 4566666666621 1346788899999998655444444445557888999999999999
Q ss_pred hHHHHHHHHHHhhcCCh-HH-HHHH----------HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH---
Q psy12605 341 ICKEAVWFLSNITAGNQ-AQ-VQAV----------IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA--- 405 (845)
Q Consensus 341 ~~~~a~~~L~nl~~~~~-~~-~~~l----------~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--- 405 (845)
++..++..|..+|.... .. ...+ -+..-...++..+.++ .+.+.+..+...+-.+..+.++
T Consensus 116 ~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~----~~~e~~~a~m~lIN~lv~~~~dl~~ 191 (386)
T 2bnx_A 116 MMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG----TSIALKVGCLQLINALITPAEELDF 191 (386)
T ss_dssp HHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT----SCHHHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcC----ChHHHHHHHHHHHHHHHCCCCCHHH
Confidence 99999888887766443 11 2222 1233556677777654 3556655555444445554442
Q ss_pred ---hHHHHHHcCChHHHHHhhCCCCHHHHHH
Q psy12605 406 ---QTQEVVAAGAVPLFLRLLMSPHSNVCEQ 433 (845)
Q Consensus 406 ---~~~~l~~~g~i~~Lv~lL~~~~~~v~~~ 433 (845)
.+..+...|..+.+-.+=...++++..+
T Consensus 192 R~~LR~Ef~~~GL~~il~~Lr~~~~~~L~~Q 222 (386)
T 2bnx_A 192 RVHIRSELMRLGLHQVLQELREIENEDMKVQ 222 (386)
T ss_dssp HHHHHHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HHHHHHHHHHCChHHHHHHHhccCChhHHHH
Confidence 4566777777777766655666665554
|
| >3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A* | Back alignment and structure |
|---|
Probab=84.70 E-value=36 Score=34.47 Aligned_cols=119 Identities=9% Similarity=0.187 Sum_probs=88.2
Q ss_pred hHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhh
Q psy12605 299 VQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378 (845)
Q Consensus 299 v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~ 378 (845)
|...+...|+-+ .++.....-++...++..+......++.++.+..+..|..++....-.. .--.+.+|-++..+..
T Consensus 259 VvtR~FDLL~LL-mHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~--t~L~e~LPFi~~~i~~ 335 (619)
T 3c2g_A 259 VIIRTFDLLGLL-LHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAK--TPLENILPFLLRLIEI 335 (619)
T ss_dssp HHHHHHHHHHHH-CCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGT--SCCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-hcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhh--ccccccchHHHHHhcc
Confidence 334445555444 5555556667888899999999999999999999999998854321110 0014568889999887
Q ss_pred cccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC
Q psy12605 379 VGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 424 (845)
Q Consensus 379 ~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~ 424 (845)
+ .+.++.....+.|.|.+.+........+.+|+++.|...+.
T Consensus 336 h----~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ 377 (619)
T 3c2g_A 336 H----PDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS 377 (619)
T ss_dssp C----CCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred C----CCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence 7 48899999999999999988777777788888888777664
|
| >1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B | Back alignment and structure |
|---|
Probab=81.95 E-value=2.2 Score=38.98 Aligned_cols=75 Identities=5% Similarity=0.025 Sum_probs=54.4
Q ss_pred CchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcC-CCHHHHHHHHHHHHHhcCccc
Q psy12605 739 VIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH-ENVEIYKLAYDIIERYFSEVE 816 (845)
Q Consensus 739 ~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~-~~~~v~~~a~~~l~~~~~~~~ 816 (845)
++..|.+-|.+.++.++..||..|..+++-+...| ...+....+++.|..+... .++.|++++..+++.......
T Consensus 53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~F---h~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~ 128 (163)
T 1x5b_A 53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIF---HLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ 128 (163)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHH---HHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHH---HHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence 44556666778899999999999999999877653 2334445555666666554 567899999999987765443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 845 | ||||
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 6e-72 | |
| d1wa5b_ | 503 | a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S | 1e-54 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 2e-52 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 1e-50 | |
| d1q1sc_ | 434 | a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus | 7e-20 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 8e-38 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 2e-29 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 3e-25 | |
| d1xm9a1 | 457 | a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo | 1e-08 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 2e-20 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-17 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 5e-16 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 1e-10 | |
| d1jdha_ | 529 | a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) | 4e-09 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 4e-18 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-09 | |
| d2vgla_ | 584 | a.118.1.10 (A:) Adaptin alpha C subunit N-terminal | 1e-04 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 2e-16 | |
| d1xqra1 | 264 | a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp | 8e-10 | |
| d2vglb_ | 579 | a.118.1.10 (B:) Adaptin beta subunit N-terminal fr | 8e-12 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 1e-06 | |
| d1qbkb_ | 888 | a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapi | 2e-04 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-06 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 5e-06 | |
| d1ibrb_ | 458 | a.118.1.1 (B:) Importin beta {Human (Homo sapiens) | 3e-05 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 6e-06 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 4e-04 | |
| d1u6gc_ | 1207 | a.118.1.2 (C:) Cullin-associated NEDD8-dissociated | 0.003 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 243 bits (619), Expect = 6e-72
Identities = 187/464 (40%), Positives = 253/464 (54%), Gaps = 45/464 (9%)
Query: 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDML----------- 49
+RRRR+ VELRK KR+E L KRRN + D E + V+ D
Sbjct: 21 LRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQ 80
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+ + D+ + QL A R++LS + PPI+ +I +G++P LVE + + LQ EA
Sbjct: 81 MTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEA 140
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV
Sbjct: 141 AWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYV 200
Query: 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 229
+ + P+L + P S +R TW + NLCR K P P S + + LP L LI+ D
Sbjct: 201 LQCNAMEPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMD 259
Query: 230 TSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289
T + LVD WA+SYL+DG + IQ VID + L+
Sbjct: 260 T-------------------------ETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLV 294
Query: 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFL 349
LLSH+ VQT +LRAVGNIVTG D QTQV++N L LL+ PKE I KEA W +
Sbjct: 295 ELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTI 354
Query: 350 SNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQE 409
SNITAGN Q+QAVIDA L+P ++ L+ + EA WA++N +SG +
Sbjct: 355 SNITAGNTEQIQAVIDANLIPPLVKLLEVA-----EYKTKKEACWAISNASSGGLQRPDI 409
Query: 410 V---VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
+ V+ G + LL + + E + AL NI+ G ++
Sbjct: 410 IRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKE 453
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 194 bits (494), Expect = 1e-54
Identities = 150/489 (30%), Positives = 215/489 (43%), Gaps = 86/489 (17%)
Query: 339 EKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTN 398
++ V F ++ ++ + VI AG++P+++ +++ LQ EAAWALTN
Sbjct: 91 QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQP----EMLQLEAAWALTN 146
Query: 399 IASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVV 458
IASGTSAQT+ VV A AVPLF++LL + V EQA+WALGN+ GD RDYV+ +
Sbjct: 147 IASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAM 206
Query: 459 PPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 518
P+L + P S +R TW + NLCR K P P S + + LP L LI+ DT
Sbjct: 207 EPILGLFNSNKP-SLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTET--- 262
Query: 519 LWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQV 578
+ C Y + V +
Sbjct: 263 ------------------LVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLS------ 298
Query: 579 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRS 638
H + A+ + NI GN Q Q VI+AG+LP + L
Sbjct: 299 ---------------HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPK 343
Query: 639 CKILNKYLDN-NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFIS 697
I + +N+ N +V N+ ++
Sbjct: 344 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLV------------------------- 378
Query: 698 RFQLMFFPQGEFQTQKEAAWAISNLTISG--NRDQVAKLVQEGVIPPFCDLLSCKDAQVI 755
E++T+KEA WAISN + G D + LV +G I P CDLL D ++I
Sbjct: 379 ----KLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 434
Query: 756 QVVLDGINNMLKMADAQVET-------LANMIEECGGLDKIEMLQNHENVEIYKLAYDII 808
+V LD + N+LKM +A E A+ IE+ GG++KI Q +EN +IY+ AY II
Sbjct: 435 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKII 494
Query: 809 ERYFSEVED 817
E YF E ED
Sbjct: 495 ETYFGEEED 503
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 186 bits (473), Expect = 2e-52
Identities = 179/406 (44%), Positives = 251/406 (61%), Gaps = 35/406 (8%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
+V+ +N E QL A Q+ARKLLS +K PPI+ +I +G++P V L ++D +QFE+
Sbjct: 18 IVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFES 77
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD V
Sbjct: 78 AWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLV 137
Query: 170 INMGVVPPLLSFIK----PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILI 225
I G + PLL+ + + +LRN+TW + NLCRNK+P P + + ++LP L L+
Sbjct: 138 IKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLL 197
Query: 226 HHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVV 285
HH+D ++L D+ WA+SYLTDG N++I+MV+ GVV
Sbjct: 198 HHND-------------------------PEVLADSCWAISYLTDGPNERIEMVVKKGVV 232
Query: 286 PSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEA 345
P L+ LL E+ + T +LRA+GNIVTGTDEQTQ +++ AL+ FP+LLT+PK I KEA
Sbjct: 233 PQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 292
Query: 346 VWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIAS-GTS 404
W +SNITAG Q Q+Q V++ GL+P ++ L K Q EAAWA+TN S GT
Sbjct: 293 TWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-----DFKTQKEAAWAITNYTSGGTV 347
Query: 405 AQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
Q +V G + + LL + + + + + A+ NI +L +
Sbjct: 348 EQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGE 393
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 182 bits (461), Expect = 1e-50
Identities = 157/489 (32%), Positives = 230/489 (47%), Gaps = 81/489 (16%)
Query: 332 ALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQF 390
+ + +A + + Q + +I AGL+PK ++ L K +QF
Sbjct: 20 KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC----SPIQF 75
Query: 391 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
E+AWALTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG RD
Sbjct: 76 ESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRD 135
Query: 451 YVINMGVVPPLLSFIK----PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNI 506
VI G + PLL+ + + +LRN+TW + NLCRNK+P P + + ++LP L
Sbjct: 136 LVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR 195
Query: 507 LIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYM 566
L+HH+D
Sbjct: 196 LLHHND------------------------------------------PEVLADSCWAIS 213
Query: 567 CVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGL 626
++ G +E+ ++++ + LL + I A+ + NI G Q Q VIDAG
Sbjct: 214 YLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGA 273
Query: 627 LPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAA 686
L + L I ++ ++ + L
Sbjct: 274 LAVFPSLLTNPKTNI----------QKEATWTMSNITAGRQDQIQQVVNHGLVPFL---- 319
Query: 687 TGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDL 746
+ + +F+TQKEAAWAI+N T G +Q+ LV G+I P +L
Sbjct: 320 --------------VGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 365
Query: 747 LSCKDAQVIQVVLDGINNMLKMAD--AQVETLANMIEECGGLDKIEMLQNHENVEIYKLA 804
LS KD ++IQV+LD I+N+ + A+ + E L+ MIEECGGLDKIE LQ HEN +YK +
Sbjct: 366 LSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKAS 425
Query: 805 YDIIERYFS 813
++IE+YFS
Sbjct: 426 LNLIEKYFS 434
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 91.0 bits (224), Expect = 7e-20
Identities = 115/379 (30%), Positives = 177/379 (46%), Gaps = 56/379 (14%)
Query: 268 LTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQT-QVILNCDA 326
+ D G++Q + + V ++ ++ ++ Q + +A +++ + I+
Sbjct: 1 MADIGSNQGTV---NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGL 57
Query: 327 LSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLR 385
+ F + L I E+ W
Sbjct: 58 IPKFVSFLGKTDCSPIQFESAWA------------------------------------- 80
Query: 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
LTNIASGTS QT+ VV GA+P F+ LL SPH+++ EQAVWALGNI GDG
Sbjct: 81 ----------LTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130
Query: 446 PQLRDYVINMGVVPPLLSFIK----PDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELL 501
RD VI G + PLL+ + + +LRN+TW + NLCRNK+P P + + ++L
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190
Query: 502 PALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561
P L L+HH+D V +I ++ + +K + +
Sbjct: 191 PTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA 250
Query: 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 621
+ GTDEQTQ +++ AL+ FP+LLT+PK I KEA W +SNITAG Q Q+Q V
Sbjct: 251 LRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQV 310
Query: 622 IDAGLLPKIIANLQKRSCK 640
++ GL+P ++ L K K
Sbjct: 311 VNHGLVPFLVGVLSKADFK 329
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 145 bits (365), Expect = 8e-38
Identities = 61/447 (13%), Positives = 130/447 (29%), Gaps = 38/447 (8%)
Query: 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 148
+P V+ L D Q A+ + + + Q+V G + + LL SP+ NV
Sbjct: 3 TIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQ 61
Query: 149 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPP 208
+ A AL N++ + + +S ++ + +T ++ NL +
Sbjct: 62 QAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELK 121
Query: 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268
+ + A ++I + ++ + L L
Sbjct: 122 EELIADALPVLADRVIIPFSGWCDGNSNMSREVV-----------DPEVFFNATGCLRNL 170
Query: 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQ--------------TASLRAVGNIVTGT 314
+ + M SG++ SL+ + + + S R + T
Sbjct: 171 SSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY 230
Query: 315 DEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIA 374
+ N ++ +K+ N + + + +
Sbjct: 231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLN 290
Query: 375 NLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQ 433
+ K + + +S +Q + +P RLL S +S+V
Sbjct: 291 LMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRS 350
Query: 434 AVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK-----PDIPISFLRNVTWVIVNLCRNK 488
L N+ P L V+ V P + + L + + + NL ++
Sbjct: 351 GASLLSNMSRH-PLLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ 408
Query: 489 DPPPSMSTIIEL--LPALNILIHHHDT 513
P L + L +
Sbjct: 409 --PQLAKQYFSSSMLNNIINLCRSSAS 433
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 120 bits (301), Expect = 2e-29
Identities = 52/466 (11%), Positives = 123/466 (26%), Gaps = 64/466 (13%)
Query: 386 PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 445
Q A+ + + + Q+V G + + LL SP+ NV + A AL N++
Sbjct: 16 EKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS 75
Query: 446 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM----------- 494
+ + +S ++ + +T ++ NL + +
Sbjct: 76 TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADR 135
Query: 495 ---STIIELLPALNILIHHHDTSVSIYLW--LSIIEKNPQISKILVSKMKVCSRYLYYLS 549
N+ D V L + + + + + + Y+
Sbjct: 136 VIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQ 195
Query: 550 HNSGPMSCQKKQHSIYMC------------VSPGTDEQTQVILNCDALSHFPALLTHPKE 597
+ C K MC V + N ++ +
Sbjct: 196 NCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSD 255
Query: 598 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVL 657
K+ N + + + + + K L
Sbjct: 256 KMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSK----KDATLEACAGALQNL 311
Query: 658 LQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAW 717
+ + ++I + + G + A
Sbjct: 312 TASKGLMSSGMSQLIGLKEKGLPQI------------------ARLLQSGNSDVVRSGAS 353
Query: 718 AISNLTISGNRDQVAKLVQEGVIPPFCDLLSC------KDAQVIQVVLDGINNMLKMADA 771
+SN++ + +++ V P LL+ ++ + N++ A
Sbjct: 354 LLSNMSRH---PLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLM----A 406
Query: 772 QVETLANMIEECGGLDKI-EMLQNHENVEIYKLAYDIIERYFSEVE 816
LA L+ I + ++ + + + A ++ +S E
Sbjct: 407 SQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 107 bits (267), Expect = 3e-25
Identities = 58/454 (12%), Positives = 130/454 (28%), Gaps = 58/454 (12%)
Query: 50 VVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEA 109
V+ + + Q + + + + G + LV+ L RS N+Q A
Sbjct: 7 AVQYLSSQDEKYQAIGA-YYIQHTCFQDESAKQQVYQLGGICKLVDLL-RSPNQNVQQAA 64
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
A AL N+ ++ E + + LL + ++ + L + +L++ +
Sbjct: 65 AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEEL 124
Query: 170 INMGVVPPLLSFIKPDIPISF--------------LRNVTWVIVNLCRNKDPPPSMSTII 215
I + I P N T + NL +M
Sbjct: 125 IADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYS 184
Query: 216 ELLPALNILIHHHDTSVSI--------------------------YLWLSIIEKNPQISK 249
L+ +L + + + Y L +N K
Sbjct: 185 GLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEK 244
Query: 250 ILVSKM-----KILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASL 304
K++ + + + S + + + L+ + +
Sbjct: 245 SSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEAC 304
Query: 305 RAVGNIVTGTDEQTQ------VILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA 358
+T + + L L LL + + LSN++
Sbjct: 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMS--RHP 362
Query: 359 QVQAVIDAGLLPKIIANLQK-VGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVP 417
+ V+ + P++ L G ++ A + + N+ + ++ ++ +
Sbjct: 363 LLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLN 422
Query: 418 LFLRLLMSPHSN-VCEQAVWALGNIIGDGPQLRD 450
+ L S S E A L ++ +L+
Sbjct: 423 NIINLCRSSASPKAAEAARLLLSDMWSS-KELQG 455
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.6 bits (132), Expect = 1e-08
Identities = 21/171 (12%), Positives = 54/171 (31%), Gaps = 13/171 (7%)
Query: 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIE----ALIHSGILPVLVECLERSD 101
+ + + + + L +S + LP + +S
Sbjct: 285 IRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARL-LQSG 343
Query: 102 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN------VCEQAVWAL 155
++ A L+N++ V+ P RLL S N + A + +
Sbjct: 344 NSDVVRSGASLLSNMSR--HPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTV 401
Query: 156 GNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206
N++ PQL + ++ +++ + ++ ++ +K+
Sbjct: 402 RNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKE 452
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 93.4 bits (230), Expect = 2e-20
Identities = 64/537 (11%), Positives = 150/537 (27%), Gaps = 59/537 (10%)
Query: 273 NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPA 332
N Q + + +P L LL+ ++ V + V + + ++ + +S
Sbjct: 7 NYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVR 66
Query: 333 LLTHPKEKICKE-AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFE 391
+ + + L N++ + A+ +G +P ++ L ++ F
Sbjct: 67 TMQNTNDVETARCTAGTLHNLSHHREGL-LAIFKSGGIPALVKMLGS-----PVDSVLFY 120
Query: 392 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 451
A L N+ V AG + + LL + L + + +
Sbjct: 121 AITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLI 180
Query: 452 VINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIH-- 509
++ G L++ ++ L + V+ L P++ + L
Sbjct: 181 ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPS 240
Query: 510 ----------------------------------HHDTSVSIYLWLSIIEKNPQISKILV 535
+++ + I N +
Sbjct: 241 QRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300
Query: 536 SKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGT-------DEQTQVILNCDALSHF 588
M + L ++ +C + + L
Sbjct: 301 KMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVV 360
Query: 589 PALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDN 648
LL P +A L A A + + G +P+++ L + +
Sbjct: 361 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 420
Query: 649 NNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGE 708
++M ++ + + + + + LF QL++
Sbjct: 421 GTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFV-----QLLY--SPI 473
Query: 709 FQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNM 765
Q+ AA + L + +++ + EG P +LL ++ V + M
Sbjct: 474 ENIQRVAAGVLCEL--AQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 82.6 bits (202), Expect = 5e-17
Identities = 64/518 (12%), Positives = 143/518 (27%), Gaps = 55/518 (10%)
Query: 333 LLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEA 392
LL + + +A + ++ ++ + ++ I+ +Q
Sbjct: 25 LLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND----VETARCT 80
Query: 393 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 452
A L N++ + +G +P +++L SP +V A+ L N++ + V
Sbjct: 81 AGTLHNLSHHREGL-LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAV 139
Query: 453 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHD 512
G + +++ + + + N++ + +NI+ +
Sbjct: 140 RLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 199
Query: 513 TSVSIYL-WLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPG 571
+ + + +K + + +L+ S + +
Sbjct: 200 EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS---- 255
Query: 572 TDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKII 631
D T+ L LL + A LSN+T N V G + ++
Sbjct: 256 -DAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314
Query: 632 ANLQKRSCK-------ILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRV 684
+ + + I + + + + PL
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374
Query: 685 AATGGFTLFAFISRFQLMFFPQG------------EFQTQKEAAWAISNL---------- 722
A G A QG TQ+ + +
Sbjct: 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 434
Query: 723 ----------TISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQ 772
++ + + IP F LL + +V + + AQ
Sbjct: 435 IVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-----AQ 489
Query: 773 VETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIER 810
+ A IE G + L + N + A ++ R
Sbjct: 490 DKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFR 527
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.6 bits (194), Expect = 5e-16
Identities = 71/563 (12%), Positives = 173/563 (30%), Gaps = 65/563 (11%)
Query: 82 EALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM 141
+A + + +P L + L + + +AA + ++ +++ + + V +R +
Sbjct: 11 DAELATRAIPELTKLL-NDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQ 69
Query: 142 SP-HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 200
+ L N + + + G +P L+ + + S L + N
Sbjct: 70 NTNDVETARCTAGTLHN-LSHHREGLLAIFKSGGIPALVKMLGSPVD-SVLFYAITTLHN 127
Query: 201 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVD 260
L +++ + L + L++ +
Sbjct: 128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITT----------------------- 164
Query: 261 TVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQV 320
L L G + +++ SG +L+ ++ + + V +++
Sbjct: 165 --DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 222
Query: 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVG 380
I+ + LT P +++ + +W L N++ Q + +
Sbjct: 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGM--------EGLLGTLVQL 274
Query: 381 RIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN--VCEQAVWAL 438
N+ AA L+N+ V G + +R ++ + E A+ AL
Sbjct: 275 LGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICAL 334
Query: 439 GNIIGDGPQLRDYVINM---GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 495
++ + + +P ++ + P ++ +I N +
Sbjct: 335 RHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRN-LALCPANHAPL 393
Query: 496 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPM 555
+P L L+ + ++ + ++ C+ L+ L+ +
Sbjct: 394 REQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARD---- 449
Query: 556 SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 615
VI + + F LL P E I + A L + A ++
Sbjct: 450 -----------------VHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCEL-AQDK 491
Query: 616 AQVQAVIDAGLLPKIIANLQKRS 638
+A+ G + L R+
Sbjct: 492 EAAEAIEAEGATAPLTELLHSRN 514
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.6 bits (150), Expect = 1e-10
Identities = 51/450 (11%), Positives = 121/450 (26%), Gaps = 49/450 (10%)
Query: 32 STDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILP 91
S + + + + +V+ + A+ + LL + + + G L
Sbjct: 88 SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLA-GGLQ 146
Query: 92 VLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQA 151
+V L +++ L +A G ++A+G + ++ +
Sbjct: 147 KMVALLNKTN-VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWT 205
Query: 152 VWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211
+ ++ + ++ G + L + +N W + NL M
Sbjct: 206 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLV-QNCLWTLRNLSDAATKQEGM 264
Query: 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVS------------------ 253
++ L L + + + + ++ N + ++
Sbjct: 265 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRE 324
Query: 254 -KMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVT 312
+ + + L+ V +P ++ LL + + +
Sbjct: 325 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLA 384
Query: 313 GTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN--------------------- 351
+ A+ LL + + +
Sbjct: 385 LCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALH 444
Query: 352 ITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVV 411
I A + + +P + L N+Q AA L +A + +
Sbjct: 445 ILARDVHNRIVIRGLNTIPLFVQLLYSP-----IENIQRVAAGVLCELAQ-DKEAAEAIE 498
Query: 412 AAGAVPLFLRLLMSPHSNVCEQAVWALGNI 441
A GA LL S + V A L +
Sbjct: 499 AEGATAPLTELLHSRNEGVATYAAAVLFRM 528
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Score = 57.6 bits (137), Expect = 4e-09
Identities = 28/132 (21%), Positives = 43/132 (32%), Gaps = 6/132 (4%)
Query: 27 VPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIH 86
V L +D + + VE R E+ + L N +
Sbjct: 403 VQLLVRAHQDTQRRTSMGGTQQQFVEGVR--MEEIVEGCTGALHILARDVHN--RIVIRG 458
Query: 87 SGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
+P+ V+ L S N+Q AA L +A + + A GA LL S +
Sbjct: 459 LNTIPLFVQLL-YSPIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSRNEG 516
Query: 147 VCEQAVWALGNI 158
V A L +
Sbjct: 517 VATYAAAVLFRM 528
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.2 bits (191), Expect = 2e-16
Identities = 36/261 (13%), Positives = 84/261 (32%), Gaps = 28/261 (10%)
Query: 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP 143
++ + P E + +D+ + A L ++ +G L R L +
Sbjct: 13 VLSQPMPPTAGEAEQAADQQERE-GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG 71
Query: 144 HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203
+ + +A +G + +++ V+ +G + LL + D + + I L R
Sbjct: 72 AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 131
Query: 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVW 263
++ ++ L + K+ V + +
Sbjct: 132 EQEAGLLQFLRLDGFSVLMRAMQQQV-------------------------QKLKVKSAF 166
Query: 264 ALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN 323
L L G + + G+V L+ L+ + L A+ ++VT + +
Sbjct: 167 LLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 226
Query: 324 CDALSHFPALLTHPKEKICKE 344
+ LL H + + +
Sbjct: 227 PELG--LEELLRHRCQLLQQH 245
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.1 bits (139), Expect = 8e-10
Identities = 24/215 (11%), Positives = 67/215 (31%), Gaps = 8/215 (3%)
Query: 391 EAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 450
A L ++ +G L R L + + + +A +G + +++
Sbjct: 36 GALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQE 95
Query: 451 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHH 510
V+ +G + LL + D + + I L R ++ ++ L +
Sbjct: 96 QVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ 155
Query: 511 HDTSVSIY---LWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMC 567
+ + L +++ +P+ K + M + + + + +
Sbjct: 156 QVQKLKVKSAFLLQNLLVGHPEH-KGTLCSMGMVQQLVALVRTEH--SPFHEHVLGALCS 212
Query: 568 VSPGTDEQTQVILNCDALSHFPALLTHPKEKICKE 602
+ + + + LL H + + +
Sbjct: 213 LVTDFPQGVRECREPELG--LEELLRHRCQLLQQH 245
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 1e-06
Identities = 44/388 (11%), Positives = 109/388 (28%), Gaps = 61/388 (15%)
Query: 93 LVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAV 152
+ + ++ W L+ A +Q + + L+ ++ + V E A
Sbjct: 440 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAAC 499
Query: 153 WALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMS 212
A + + + + + +F K + + I L + +
Sbjct: 500 SAFATLEEEACTELVPYLAYILDTLVFAFSKYQHKNLLI--LYDAIGTLADSVGHHLNKP 557
Query: 213 TIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG 272
I++L ++ + ++E ++ L S + V
Sbjct: 558 EYIQML-MPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPV-----YQRCV 611
Query: 273 NDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH-FP 331
N + + + + + + +L + + G + ++ +
Sbjct: 612 NLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMY 671
Query: 332 ALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFE 391
+ ++ + + L ++T V+ I
Sbjct: 672 QCMQDKMPEVRQSSFALLGDLTKACFQHVKPCIAD------------------------- 706
Query: 392 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII-GDGPQLRD 450
+P+ L +VC A WA+G I G +++
Sbjct: 707 -----------------------FMPILGTNLNPEFISVCNNATWAIGEISIQMGIEMQP 743
Query: 451 YVINMGVVPPLLSFIK-PDIPISFLRNV 477
Y+ V+ L+ I P+ P + L N
Sbjct: 744 YIPM--VLHQLVEIINRPNTPKTLLENT 769
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} Length = 888 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.4 bits (98), Expect = 2e-04
Identities = 31/169 (18%), Positives = 67/169 (39%), Gaps = 6/169 (3%)
Query: 28 PLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS 87
P+ + +AQ L+ + + + ++A+ L + + S
Sbjct: 605 PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARS 664
Query: 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNV 147
IL ++ +C++ P ++ + L ++ + +A +P+ L +V
Sbjct: 665 NILTLMYQCMQDKM-PEVRQSSFALLGDLTKACFQHVKPCIAD-FMPILGTNLNPEFISV 722
Query: 148 CEQAVWALGNII-GDGPQLRDYVINMGVVPPLLSFIK-PDIPISFLRNV 194
C A WA+G I G +++ Y+ V+ L+ I P+ P + L N
Sbjct: 723 CNNATWAIGEISIQMGIEMQPYIPM--VLHQLVEIINRPNTPKTLLENT 769
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 24/96 (25%), Positives = 38/96 (39%), Gaps = 4/96 (4%)
Query: 85 IHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPH 144
I +LP + E ++ D + A A I G + + A+P + L+ P
Sbjct: 362 IVPHVLPFIKEHIKNPD-WRYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPS 420
Query: 145 SNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLS 180
V + A W +G I P+ IN + PLL
Sbjct: 421 VVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQ 453
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 44/297 (14%), Positives = 101/297 (34%), Gaps = 18/297 (6%)
Query: 89 ILPVLVECLERSDR-PNLQFEAAWALTNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSN 146
IL +++ + + + N++ A AL N + +E + + P +
Sbjct: 172 ILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR 231
Query: 147 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNV-TWVIVNLCRNK 205
V A+ L I+ Q + + + + +K DI L+ + W V
Sbjct: 232 VRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMD 291
Query: 206 DPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWAL 265
+ + P + + ++ P +++ L + + D W
Sbjct: 292 LAIEASEAAEQGRPPEHTSKFYAKGALQ--------YLVPILTQTLTKQDENDDDDDWNP 343
Query: 266 SYLTDGGNDQIQMVIDSGVVPSLIP----LLSHKEVKVQTASLRAVGNIVTGTDEQTQVI 321
+ + +VP ++P + + + + + A++ A G I+ G +
Sbjct: 344 CKAAGVCLMLLATCCEDDIVPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP 403
Query: 322 LNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378
L A+ L+ P + A W + I + +A I+ L ++ L +
Sbjct: 404 LVIQAMPTLIELMKDPSVVVRDTAAWTVGRIC---ELLPEAAINDVYLAPLLQCLIE 457
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} Length = 458 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.8 bits (104), Expect = 3e-05
Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 3/72 (4%)
Query: 392 AAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY 451
A A I G + + A+P + L+ P V + A W +G I P+
Sbjct: 385 AVMAFGCILEGPEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA--- 441
Query: 452 VINMGVVPPLLS 463
IN + PLL
Sbjct: 442 AINDVYLAPLLQ 453
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.8 bits (112), Expect = 6e-06
Identities = 83/633 (13%), Positives = 182/633 (28%), Gaps = 72/633 (11%)
Query: 32 STDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHS---- 87
D+D K+ + ++++ N E+Q LAV+ L+S K +E ++ +
Sbjct: 37 KLDDDSERKVVK-----MILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVETIVDTLCTN 91
Query: 88 --------------------------------------GILPVLVECLERSDRPNLQFEA 109
I L + + + ++Q EA
Sbjct: 92 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEA 151
Query: 110 AWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYV 169
+ ++ S + + L L SP V ++ + ALG+++ +
Sbjct: 152 LDIMADMLSRQGGLLVNFHPS-ILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN----I 206
Query: 170 INMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN--KDPPPSMSTIIELLPALNILIHH 227
+ + ++ LLS + + +S R I + R + II L+ +
Sbjct: 207 VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDD 266
Query: 228 HDTSVSIYLWLSIIEK-----NPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS 282
I + S + + P +S I+ +K L D + +
Sbjct: 267 ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGD 326
Query: 283 GVVPSLIPLLS---HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339
S KV+ A+ + + +V+ E + +E
Sbjct: 327 DDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYK-TVSPALISRFKEREE 385
Query: 340 KICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNI 399
+ + ++ + + D + + L + V PN+ +A
Sbjct: 386 NVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQV--PNI-VKALHKQMKE 442
Query: 400 ASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP 459
S + Q + V + L + +++L + D + + V+
Sbjct: 443 KSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVIL 502
Query: 460 PLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYL 519
S + L V K ++ +L+ + L + Y+
Sbjct: 503 CNHSPQVFHPHVQALVPPVVACVGDPFYKITSEALLVTQQLVKVIRPLDQPSSFDATPYI 562
Query: 520 W------LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTD 573
+ ++ ++ + + + L N G Q + + T
Sbjct: 563 KDLFTCTIKRLKAADIDQEVKERAISCMGQIICNLGDNLGSDLPNTLQIFLERLKNEITR 622
Query: 574 EQTQVILNCDALSHFPALLTHPKEKICKEAVWF 606
T L A S L + F
Sbjct: 623 LTTVKALTLIAGSPLKIDLRPVLGEGVPILASF 655
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.7 bits (96), Expect = 4e-04
Identities = 55/409 (13%), Positives = 126/409 (30%), Gaps = 38/409 (9%)
Query: 94 VECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVW 153
+ R ++ L+ AL + S + + L+ +V + A+
Sbjct: 652 LASFLRKNQRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDMHVSQMAIS 711
Query: 154 ALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI-----PISFLRNVTWVIVNLCRNKDPP 208
L + P + ++ L+ ++ + + L ++V N
Sbjct: 712 FLTTLAKVYPSSLSKISGS-ILNELIGLVRSPLLQGGALSAMLDFFQALVVTGTNNLGYM 770
Query: 209 PSMSTIIELLPALNILIHHHDTSVSIYLWLSII------EKNPQISKILVSKMKILVDTV 262
+ + + + + + H + SI ++ + E + + +
Sbjct: 771 DLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDS 830
Query: 263 WALSYLTDGGN--DQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTG------- 313
L L G I + + ++ S +V++A+ A+G+I G
Sbjct: 831 IRLLALLSLGEVGHHIDLSGQLELKSVILEAFSSPSEEVKSAASYALGSISVGNLPEYLP 890
Query: 314 ------TDEQTQVILNCDALSHFPALLTHPKEKICKEAVW-FLSNITAGNQAQVQAVIDA 366
T + + L +L + + K E +W L + + V+
Sbjct: 891 FVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVAE 950
Query: 367 GLLPKIIANLQKVGRIVLR------PNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFL 420
L + + + + + + A+ S ++ + FL
Sbjct: 951 CLGKLTLIDPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK-NCIGDFL 1009
Query: 421 RLLMSPHSNVCEQAVWALGNIIGDGPQL-RDYVINMGVVPPLLSFIKPD 468
+ L P NV A+ + + P L RD + V+P L + K
Sbjct: 1010 KTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT--VLPHLYNETKVR 1056
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.0 bits (89), Expect = 0.003
Identities = 28/176 (15%), Positives = 54/176 (30%), Gaps = 15/176 (8%)
Query: 11 ELRKNKREETLQKRRNVPLADSTDEDDIEKMAQVNLDMLVVEAARKDNPELQLLAVQSAR 70
E+ + + L + S ++ + +L+ + + + +
Sbjct: 895 EITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLL-KHCECAEEGTRNVVAECLG 953
Query: 71 KLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAA 130
KL D +LP L L + A+ S ++
Sbjct: 954 KLTLID---------PETLLPRLKGYLISGS-SYARSSVVTAVKFTISDHPQPIDPLLK- 1002
Query: 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQL-RDYVINMGVVPPLLSFIKPD 185
+ FL+ L P NV A+ + + P L RD + V+P L + K
Sbjct: 1003 NCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDT--VLPHLYNETKVR 1056
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 845 | |||
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1jdha_ | 529 | beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | 100.0 | |
| d1q1sc_ | 434 | Importin alpha {Mouse (Mus musculus) [TaxId: 10090 | 99.97 | |
| d1wa5b_ | 503 | Karyopherin alpha {Baker's yeast (Saccharomyces ce | 99.97 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.94 | |
| d1xm9a1 | 457 | Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | 99.91 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.85 | |
| d1b3ua_ | 588 | Constant regulatory domain of protein phosphatase | 99.75 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.74 | |
| d1xqra1 | 264 | Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi | 99.73 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.69 | |
| d2vglb_ | 579 | Adaptin beta subunit N-terminal fragment {Human (H | 99.57 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.52 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.51 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.51 | |
| d1qbkb_ | 888 | Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96 | 99.51 | |
| d2bpta1 | 861 | Importin beta {Baker's yeast (Saccharomyces cerevi | 99.41 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.35 | |
| d1u6gc_ | 1207 | Cullin-associated NEDD8-dissociated protein 1 (Tip | 99.21 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 99.09 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.05 | |
| d1qgra_ | 876 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 99.04 | |
| d1oyza_ | 276 | Hypothetical protein YibA {Escherichia coli [TaxId | 98.94 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.91 | |
| d2vgla_ | 584 | Adaptin alpha C subunit N-terminal fragment {Mouse | 98.89 | |
| d1ibrb_ | 458 | Importin beta {Human (Homo sapiens) [TaxId: 9606]} | 98.79 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.23 | |
| d1ho8a_ | 477 | Regulatory subunit H of the V-type ATPase {Baker's | 98.23 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.82 | |
| d1te4a_ | 111 | MTH187 {Archaeon Methanobacterium thermoautotrophi | 97.8 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 97.34 | |
| d1wa5c_ | 959 | Exportin Cse1p {Baker's yeast (Saccharomyces cerev | 96.86 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 96.29 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 94.63 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 93.95 | |
| d1lrva_ | 233 | Leucine-rich repeat variant {Azotobacter vinelandi | 93.92 | |
| d1upka_ | 330 | Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | 93.85 | |
| d1lsha1 | 336 | Lipovitellin-phosvitin complex, superhelical domai | 93.27 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 91.12 | |
| d2bnxa1 | 343 | Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) { | 90.18 |
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.9e-47 Score=435.63 Aligned_cols=351 Identities=48% Similarity=0.743 Sum_probs=311.0
Q ss_pred ChhhhhHHHHHHhhhhhHHHHHhhcCCCCCCCCChh------------hHHHHhhhcHHHHHHHHHcCCChHHHHHHHHH
Q psy12605 1 MRRRRNEVTVELRKNKREETLQKRRNVPLADSTDED------------DIEKMAQVNLDMLVVEAARKDNPELQLLAVQS 68 (845)
Q Consensus 1 ~~~~r~~~~~~lrk~kr~~~~~~~R~~~~~~~~~~~------------~~~~~~~~~i~~lv~~~l~~~~~~~~~~a~~~ 68 (845)
|||||++++++|||+||+++|+|||+.......... .........++.++ ..++++|+..+..|+..
T Consensus 21 ~r~kR~~~~veiRk~kr~e~l~kkR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~s~~~~~~~~a~~~ 99 (503)
T d1wa5b_ 21 LRRRRDTQQVELRKAKRDEALAKRRNFIPPTDGADSDEEDESSVSADQQFYSQLQQELPQMT-QQLNSDDMQEQLSATVK 99 (503)
T ss_dssp CCCCTTSSCCCCSCCCCCSCCSCCCCC----------------------------CCHHHHH-HHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHhhcCCCcccccccccchhccccchhhHHHHHHHHHHHHHH-HHhcCCCHHHHHHHHHH
Confidence 799999999999999999999999977543211000 01122456788999 89999999999999999
Q ss_pred HHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHH
Q psy12605 69 ARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVC 148 (845)
Q Consensus 69 l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~ 148 (845)
++++++...+++.+.++++|++|.|+++|+.+.++.++..|+++|++++.++++....+.+.|++|.++.+|.+++.+++
T Consensus 100 ~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~ 179 (503)
T d1wa5b_ 100 FRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVK 179 (503)
T ss_dssp HHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHH
T ss_pred HHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCCChhHH
Confidence 99999888788899999999999999999766778899999999999999988899999999999999999999999999
Q ss_pred HHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccC
Q psy12605 149 EQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHH 228 (845)
Q Consensus 149 ~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~ 228 (845)
+.|+|+|+||+.++++.|+.+.+.|+++.++.++... ...+++.++|+|.+++.+..+........+++|.|+.++.+.
T Consensus 180 ~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~-~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~ 258 (503)
T d1wa5b_ 180 EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSN-KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM 258 (503)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSC-CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC
T ss_pred HHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccC-CHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc
Confidence 9999999999999999999999999999999999877 457999999999999998877788888889999999999999
Q ss_pred CchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHH
Q psy12605 229 DTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVG 308 (845)
Q Consensus 229 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~ 308 (845)
|++ ++..++|++.+++....+....+.+.|+++.++.++.+++..++.+|+.+|+
T Consensus 259 d~~-------------------------~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~ 313 (503)
T d1wa5b_ 259 DTE-------------------------TLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVG 313 (503)
T ss_dssp CHH-------------------------HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred cHH-------------------------HHHHHHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHH
Confidence 988 8999999999999988888888899999999999999999999999999999
Q ss_pred HHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhh
Q psy12605 309 NIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQK 378 (845)
Q Consensus 309 nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~ 378 (845)
+++.+++.....+.+.|+++.+..++.++++.++..++|+|+|++.+++.....+++.++++.++..+.+
T Consensus 314 nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~ 383 (503)
T d1wa5b_ 314 NIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEV 383 (503)
T ss_dssp HHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhccc
Confidence 9999988888889999999999999999999999999999999999888877777777777777766654
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.2e-38 Score=353.02 Aligned_cols=417 Identities=52% Similarity=0.892 Sum_probs=366.7
Q ss_pred hhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChh
Q psy12605 43 QVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSA 122 (845)
Q Consensus 43 ~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~ 122 (845)
+..+++++ +.+++++++.+..|+.+++++++...++..+.+++.|++|.|+++|++++++++|..|+++|.++|+++++
T Consensus 12 ~~~i~~lv-~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~ 90 (434)
T d1q1sc_ 12 NWSVEDIV-KGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSE 90 (434)
T ss_dssp SCCHHHHH-HHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHH
T ss_pred hhhHHHHH-HHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChh
Confidence 45788999 89999999999999999999998887777889999999999999997667789999999999999998889
Q ss_pred hHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCC----CHHHHHHHHHHH
Q psy12605 123 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDI----PISFLRNVTWVI 198 (845)
Q Consensus 123 ~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~----~~~~~~~a~~~L 198 (845)
.+..+++.|++|.|+.+|+++++++++.|+++|+|++.+++..+..+.+.|+++.++.++.... .....+.++|++
T Consensus 91 ~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l 170 (434)
T d1q1sc_ 91 QTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTL 170 (434)
T ss_dssp HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHH
T ss_pred hhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999997653 235667889999
Q ss_pred HHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHH
Q psy12605 199 VNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQM 278 (845)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 278 (845)
.+++.+...........+++|.+..++.+++++ ++..++|++.+++.++.+....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~-------------------------~~~~a~~~l~~l~~~~~~~~~~ 225 (434)
T d1q1sc_ 171 SNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPE-------------------------VLADSCWAISYLTDGPNERIEM 225 (434)
T ss_dssp HHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHH-------------------------HHHHHHHHHHHHTSSCHHHHHH
T ss_pred HHHhhcccccchhhhhhhHHHHHHHHHhccccc-------------------------hhhhHHhhhcccchhhhhhHHH
Confidence 999998877777777889999999999999988 9999999999999988888888
Q ss_pred HHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChH
Q psy12605 279 VIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQA 358 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~ 358 (845)
+...|+++.++.++.++++.++..++++|++++.+++..+..+.+.|+++.+..++++.+++++..++++|.+++.+..+
T Consensus 226 ~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~ 305 (434)
T d1q1sc_ 226 VVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 305 (434)
T ss_dssp HHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHH
T ss_pred HhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccch
Confidence 88999999999999999999999999999999998888888899999999999999998888888888888887544333
Q ss_pred HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHH
Q psy12605 359 QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWAL 438 (845)
Q Consensus 359 ~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L 438 (845)
...
T Consensus 306 ~~~----------------------------------------------------------------------------- 308 (434)
T d1q1sc_ 306 QIQ----------------------------------------------------------------------------- 308 (434)
T ss_dssp HHH-----------------------------------------------------------------------------
T ss_pred hHH-----------------------------------------------------------------------------
Confidence 222
Q ss_pred HHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH
Q psy12605 439 GNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 518 (845)
Q Consensus 439 ~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~ 518 (845)
T Consensus 309 -------------------------------------------------------------------------------- 308 (434)
T d1q1sc_ 309 -------------------------------------------------------------------------------- 308 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChh
Q psy12605 519 LWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEK 598 (845)
Q Consensus 519 ~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~ 598 (845)
T Consensus 309 -------------------------------------------------------------------------------- 308 (434)
T d1q1sc_ 309 -------------------------------------------------------------------------------- 308 (434)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhcccc
Q psy12605 599 ICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQK 678 (845)
Q Consensus 599 v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 678 (845)
.+.+.|+++.+++++
T Consensus 309 ---------------------~i~~~~~i~~li~~l-------------------------------------------- 323 (434)
T d1q1sc_ 309 ---------------------QVVNHGLVPFLVGVL-------------------------------------------- 323 (434)
T ss_dssp ---------------------HHHHTTCHHHHHHHH--------------------------------------------
T ss_pred ---------------------HHhhhhhHHHHHHHH--------------------------------------------
Confidence 222344555555554
Q ss_pred CccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHH
Q psy12605 679 TSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVV 758 (845)
Q Consensus 679 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~a 758 (845)
.+.+++++..|+|+++|++..++++....+.+.|++++|+++|+..|++++..+
T Consensus 324 --------------------------~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~ll~~~d~~~~~~~ 377 (434)
T d1q1sc_ 324 --------------------------SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVI 377 (434)
T ss_dssp --------------------------HSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHHTTSSCHHHHHHH
T ss_pred --------------------------hccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhcCCCHHHHHHH
Confidence 344567777888888888777788888889999999999999999999999999
Q ss_pred HHHHHHHHHhhHH--HHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhcC
Q psy12605 759 LDGINNMLKMADA--QVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFS 813 (845)
Q Consensus 759 l~~L~~l~~~~~~--~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~ 813 (845)
+.+|.++++.++. ..+++...+++.|+++.|+.|++|+|+++++.|.++|++||.
T Consensus 378 l~~l~~ll~~~~~~~~~~~~~~~~~~~~~~~~i~~L~~~~n~~i~~~a~~il~~~f~ 434 (434)
T d1q1sc_ 378 LDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFS 434 (434)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHTTSHHHHHHHHTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 9999999987654 256788899999999999999999999999999999999994
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.4e-36 Score=341.57 Aligned_cols=509 Identities=16% Similarity=0.170 Sum_probs=414.2
Q ss_pred HhhhcHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHH-hcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcC
Q psy12605 41 MAQVNLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALI-HSGILPVLVECLERSDRPNLQFEAAWALTNIASG 119 (845)
Q Consensus 41 ~~~~~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~ 119 (845)
+....+|.++ ++++++|...+..|+..+..+...+ .....++ ..|+++.|+.+|+.+++++++..|+++|.+++.
T Consensus 14 ~~~~aip~L~-~lL~~~~~~v~~~A~~~l~~l~~~~--~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~- 89 (529)
T d1jdha_ 14 LATRAIPELT-KLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH- 89 (529)
T ss_dssp ---CHHHHHH-HHHTCSCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHhcc--HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-
Confidence 4456799999 8999999999999999999986543 2334444 457899999999877888999999999999985
Q ss_pred ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHH
Q psy12605 120 TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIV 199 (845)
Q Consensus 120 ~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~ 199 (845)
+++.+..+++.|++|.|+++|++++++++..|+++|++++.+++..+..+.+.|+++.|+.+++++ +..++..++++|.
T Consensus 90 ~~~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~ 168 (529)
T d1jdha_ 90 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-NVKFLAITTDCLQ 168 (529)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-CHHHHHHHHHHHH
T ss_pred CchhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHcc-ChHHHHHHHHHHH
Confidence 588899999999999999999999999999999999999999888999999999999999999877 5689999999999
Q ss_pred HhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 200 NLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 200 ~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
+++...+.........++++.++.++.+.+.. .++..+++++.+++... +....+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~------------------------~~~~~~~~~l~~ls~~~-~~~~~~ 223 (529)
T d1jdha_ 169 ILAYGNQESKLIILASGGPQALVNIMRTYTYE------------------------KLLWTTSRVLKVLSVCS-SNKPAI 223 (529)
T ss_dssp HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCH------------------------HHHHHHHHHHHHHTTST-THHHHH
T ss_pred HHhhhhhHHHHHHHhcccchHHHHHHHhhhhH------------------------HHHHHHHHHHhhhhccc-cccchh
Confidence 99987755555566778999999999765543 17788999999998754 455677
Q ss_pred HhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHH
Q psy12605 280 IDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 359 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~ 359 (845)
.+.|+++.|+.++.+++..++..++.++.+++..... .....|+++.|++++.+.+..++..++++|++++.+++..
T Consensus 224 ~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~---~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~ 300 (529)
T d1jdha_ 224 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKN 300 (529)
T ss_dssp HHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHH
T ss_pred hhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccc---hhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHH
Confidence 8999999999999999999999999999999754322 2223478999999999999999999999999999999988
Q ss_pred HHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCCh---HhHHHHHHcCChHHHHHhhCCCC-HHHHHHHH
Q psy12605 360 VQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTS---AQTQEVVAAGAVPLFLRLLMSPH-SNVCEQAV 435 (845)
Q Consensus 360 ~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~l~~~g~i~~Lv~lL~~~~-~~v~~~a~ 435 (845)
...+.+.++++.++..+.... ..+.++..+++++.+++.... .....+...|+++.++.++..++ ..++..++
T Consensus 301 ~~~i~~~~~i~~Li~~l~~~~---~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~~~~ 377 (529)
T d1jdha_ 301 KMMVCQVGGIEALVRTVLRAG---DREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATV 377 (529)
T ss_dssp HHHHHHTTHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHhhh---cchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHHHHH
Confidence 888899999999999997653 467899999999999997554 34566778899999999998755 56888999
Q ss_pred HHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhH
Q psy12605 436 WALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSV 515 (845)
Q Consensus 436 ~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v 515 (845)
+++++++.+. ..+..+.+.|+++.|++++.+... +..+..++......
T Consensus 378 ~~l~~l~~~~-~~~~~l~~~g~i~~L~~lL~~~~~-~~~~~~~~~~~~~~------------------------------ 425 (529)
T d1jdha_ 378 GLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAHQ-DTQRRTSMGGTQQQ------------------------------ 425 (529)
T ss_dssp HHHHHHTTSG-GGHHHHHHTTHHHHHHHHHHHHHH-HHC-----------------------------------------
T ss_pred HHHhhcchhh-hhhhhhhhcccHHHHHHHHhcCCH-HHHHHHHhhhhhHH------------------------------
Confidence 9999998764 567888999999999998854321 11111111000000
Q ss_pred HHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcC-
Q psy12605 516 SIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH- 594 (845)
Q Consensus 516 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~- 594 (845)
....
T Consensus 426 ---------------------------------------------------------------------------~~~~~ 430 (529)
T d1jdha_ 426 ---------------------------------------------------------------------------FVEGV 430 (529)
T ss_dssp ---------------------------------------------------------------------------CBTTB
T ss_pred ---------------------------------------------------------------------------hhccc
Confidence 0000
Q ss_pred CChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhh
Q psy12605 595 PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYS 674 (845)
Q Consensus 595 ~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 674 (845)
...++.+.++.++.+++. .+.....+.+.|+++.|+++|
T Consensus 431 ~~~~~~~~~~~al~~la~-~~~~r~~~~~~~~i~~Lv~lL---------------------------------------- 469 (529)
T d1jdha_ 431 RMEEIVEGCTGALHILAR-DVHNRIVIRGLNTIPLFVQLL---------------------------------------- 469 (529)
T ss_dssp CHHHHHHHHHHHHHHHTT-SHHHHHHHHHTTCHHHHHHGG----------------------------------------
T ss_pred chHHHHHHHHHHHHHHcc-CHHHHHHHHHCCCHHHHHHHh----------------------------------------
Confidence 123566777888888874 455566777899999999988
Q ss_pred ccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHH
Q psy12605 675 SFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQV 754 (845)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~ 754 (845)
.+++++++..++++|++++ .+++....+.+.|++++|+++++++++.+
T Consensus 470 ------------------------------~~~~~~v~~~a~~aL~~L~--~~~~~~~~i~~~g~~~~L~~Ll~s~n~~v 517 (529)
T d1jdha_ 470 ------------------------------YSPIENIQRVAAGVLCELA--QDKEAAEAIEAEGATAPLTELLHSRNEGV 517 (529)
T ss_dssp ------------------------------GCSCHHHHHHHHHHHHHHT--TSHHHHHHHHHTTCHHHHHHGGGCSSHHH
T ss_pred ------------------------------CCCCHHHHHHHHHHHHHHh--cChhhHHHHHHCCCHHHHHHHhCCCCHHH
Confidence 4567899999999999998 46777888889999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy12605 755 IQVVLDGINNM 765 (845)
Q Consensus 755 ~~~al~~L~~l 765 (845)
+..|..+|.+|
T Consensus 518 ~~~a~~aL~~l 528 (529)
T d1jdha_ 518 ATYAAAVLFRM 528 (529)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999999886
|
| >d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: beta-Catenin species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.5e-36 Score=341.04 Aligned_cols=508 Identities=16% Similarity=0.181 Sum_probs=410.1
Q ss_pred HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHH-cCChHHHHHhhCC-CChhHHHHHHHHHHHhcCC
Q psy12605 84 LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVA-AGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGD 161 (845)
Q Consensus 84 i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~-~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~ 161 (845)
-+..+.+|.|+++|+ ++++.++..|+.+|.+++.. ...+..++. .|+++.|+++|.. +++++++.|+++|++++ .
T Consensus 13 ~~~~~aip~L~~lL~-~~~~~v~~~A~~~l~~l~~~-~~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~-~ 89 (529)
T d1jdha_ 13 ELATRAIPELTKLLN-DEDQVVVNKAAVMVHQLSKK-EASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLS-H 89 (529)
T ss_dssp ----CHHHHHHHHHT-CSCHHHHHHHHHHHHHHHTS-HHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT-T
T ss_pred HHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHhc-cHHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHh-C
Confidence 345678999999994 77889999999999999975 555555555 5789999999975 57899999999999999 4
Q ss_pred ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHh
Q psy12605 162 GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSII 241 (845)
Q Consensus 162 ~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~ 241 (845)
+++.+..+++.|+++.|+.+|+++ +.+++..|+++|.+++.+.+.........|++|.|+.++.+++++
T Consensus 90 ~~~~~~~i~~~g~i~~Li~lL~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~---------- 158 (529)
T d1jdha_ 90 HREGLLAIFKSGGIPALVKMLGSP-VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVK---------- 158 (529)
T ss_dssp SHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHH----------
T ss_pred CchhHHHHHHCCCHHHHHHHhCCC-CHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChH----------
Confidence 678999999999999999999876 568999999999999998866666667789999999999998888
Q ss_pred hhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC-CchhhHHHHHHHHHHHhcCChhhHHH
Q psy12605 242 EKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-KEVKVQTASLRAVGNIVTGTDEQTQV 320 (845)
Q Consensus 242 ~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-~~~~v~~~al~~L~nl~~~~~~~~~~ 320 (845)
++..++++|.+++..+.+....+.+.|+++.++.++.+ +...++..+++++.+++.. ++.+..
T Consensus 159 ---------------~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~-~~~~~~ 222 (529)
T d1jdha_ 159 ---------------FLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPA 222 (529)
T ss_dssp ---------------HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS-TTHHHH
T ss_pred ---------------HHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhcc-ccccch
Confidence 89999999999998888877888899999999999954 4577999999999999764 566788
Q ss_pred HhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHh
Q psy12605 321 ILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIA 400 (845)
Q Consensus 321 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~ 400 (845)
+.+.|+++.|..++.+++..++..+++++.+++...... ....++++.|++++.+ .++.++..++++|++++
T Consensus 223 ~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~---~~~~~~i~~Lv~ll~~-----~~~~~~~~a~~~L~~l~ 294 (529)
T d1jdha_ 223 IVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGS-----DDINVVTCAAGILSNLT 294 (529)
T ss_dssp HHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC---SCCHHHHHHHHHHTTC-----SCHHHHHHHHHHHHHHT
T ss_pred hhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch---hhhhhcchhhhhhccc-----ccHHHHHHHHHHHHhhc
Confidence 899999999999999999999999999999996544321 2234678999999987 47899999999999999
Q ss_pred cCChHhHHHHHHcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcCC---hHHHHHHHhCCChHHHHhccCCCCChhHHH
Q psy12605 401 SGTSAQTQEVVAAGAVPLFLRLLM--SPHSNVCEQAVWALGNIIGDG---PQLRDYVINMGVVPPLLSFIKPDIPISFLR 475 (845)
Q Consensus 401 ~~~~~~~~~l~~~g~i~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~---~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~ 475 (845)
.++++.+..+.+.|+++.++.++. ++.++++..++++|++++... +..+..+...|+++.++.++....+..+..
T Consensus 295 ~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~~~~~~~~~~ 374 (529)
T d1jdha_ 295 CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374 (529)
T ss_dssp TTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHH
T ss_pred cchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHhccchHHHHH
Confidence 999999999999999999999884 567889999999999999754 346777889999999999998877777888
Q ss_pred HHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCc
Q psy12605 476 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPM 555 (845)
Q Consensus 476 ~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~ 555 (845)
.+++++.|++....
T Consensus 375 ~~~~~l~~l~~~~~------------------------------------------------------------------ 388 (529)
T d1jdha_ 375 ATVGLIRNLALCPA------------------------------------------------------------------ 388 (529)
T ss_dssp HHHHHHHHHTTSGG------------------------------------------------------------------
T ss_pred HHHHHHhhcchhhh------------------------------------------------------------------
Confidence 88888888874331
Q ss_pred ccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhh
Q psy12605 556 SCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQ 635 (845)
Q Consensus 556 ~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~ 635 (845)
....+.+.|+++.++.++.+.+.+++..+.+........+
T Consensus 389 -------------------~~~~l~~~g~i~~L~~lL~~~~~~~~~~~~~~~~~~~~~~--------------------- 428 (529)
T d1jdha_ 389 -------------------NHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE--------------------- 428 (529)
T ss_dssp -------------------GHHHHHHTTHHHHHHHHHHHHHHHHC-----------CBT---------------------
T ss_pred -------------------hhhhhhhcccHHHHHHHHhcCCHHHHHHHHhhhhhHHhhc---------------------
Confidence 1123445556666666665555444444443322111000
Q ss_pred hhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHH
Q psy12605 636 KRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEA 715 (845)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 715 (845)
.....++...+
T Consensus 429 ---------------------------------------------------------------------~~~~~~~~~~~ 439 (529)
T d1jdha_ 429 ---------------------------------------------------------------------GVRMEEIVEGC 439 (529)
T ss_dssp ---------------------------------------------------------------------TBCHHHHHHHH
T ss_pred ---------------------------------------------------------------------ccchHHHHHHH
Confidence 11223566677
Q ss_pred HHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcC
Q psy12605 716 AWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNH 795 (845)
Q Consensus 716 ~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~ 795 (845)
+.++.+++ .++.+...+.+.|++++|+++|.++++.++..++.+|.+|....+. .+.+.+.|++..|.+|+++
T Consensus 440 ~~al~~la--~~~~~r~~~~~~~~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~-----~~~i~~~g~~~~L~~Ll~s 512 (529)
T d1jdha_ 440 TGALHILA--RDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA-----AEAIEAEGATAPLTELLHS 512 (529)
T ss_dssp HHHHHHHT--TSHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSHHH-----HHHHHHTTCHHHHHHGGGC
T ss_pred HHHHHHHc--cCHHHHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHHhcChhh-----HHHHHHCCCHHHHHHHhCC
Confidence 88888887 4667777788999999999999999999999999999999865443 4689999999999999999
Q ss_pred CCHHHHHHHHHHHHHh
Q psy12605 796 ENVEIYKLAYDIIERY 811 (845)
Q Consensus 796 ~~~~v~~~a~~~l~~~ 811 (845)
+|+.+++.|..+|.+.
T Consensus 513 ~n~~v~~~a~~aL~~l 528 (529)
T d1jdha_ 513 RNEGVATYAAAVLFRM 528 (529)
T ss_dssp SSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999998864
|
| >d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=2.6e-28 Score=270.77 Aligned_cols=369 Identities=34% Similarity=0.564 Sum_probs=320.9
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhcCChH-HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITAGNQA-QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~-~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
+.++.+++.+.+++++.+..|+.++.++...... ..+.+++.|++|.|+++|.+. ++++++..|+|+|.+++.++
T Consensus 13 ~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~----~~~~v~~~a~~~L~~la~~~ 88 (434)
T d1q1sc_ 13 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKT----DCSPIQFESAWALTNIASGT 88 (434)
T ss_dssp CCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCG----GGHHHHHHHHHHHHHHHTSC
T ss_pred hhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccC----CCHHHHHHHHHHHHHHhcCC
Confidence 5688899999999999999999999998653332 356788999999999999765 46889999999999999999
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCC----hhHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIP----ISFLRNVTW 479 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~----~~~~~~~~~ 479 (845)
++.+..+++.|+++.|+.++.+++++++..|+++|+|++.+++..+..+.+.|+++.++.++..... ....+.++|
T Consensus 89 ~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~ 168 (434)
T d1q1sc_ 89 SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTW 168 (434)
T ss_dssp HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHH
T ss_pred hhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999975443 456788999
Q ss_pred HHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccc
Q psy12605 480 VIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSC 557 (845)
Q Consensus 480 ~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~ 557 (845)
++.+++.+..+........++++.+..++.+.|+++... +| +.+++..
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a~~~l~~l~~~------------------------------ 218 (434)
T d1q1sc_ 169 TLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDG------------------------------ 218 (434)
T ss_dssp HHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSS------------------------------
T ss_pred HHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhHHhhhcccchh------------------------------
Confidence 999999988777777888899999999999998887654 44 5544432
Q ss_pred ccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhh
Q psy12605 558 QKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKR 637 (845)
Q Consensus 558 ~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~ 637 (845)
+++....+...|+++.++.++.++++.++..++++|.+++.+++.....+++.|+++.+++++
T Consensus 219 --------------~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll--- 281 (434)
T d1q1sc_ 219 --------------PNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL--- 281 (434)
T ss_dssp --------------CHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT---
T ss_pred --------------hhhhHHHHhhcccchhcccccccchhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhh---
Confidence 333345566778889999999999999999999999999999998888999999999999887
Q ss_pred hhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHH
Q psy12605 638 SCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAW 717 (845)
Q Consensus 638 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 717 (845)
.+.+++++..++|
T Consensus 282 -------------------------------------------------------------------~~~~~~v~~~a~~ 294 (434)
T d1q1sc_ 282 -------------------------------------------------------------------TNPKTNIQKEATW 294 (434)
T ss_dssp -------------------------------------------------------------------TCSSHHHHHHHHH
T ss_pred -------------------------------------------------------------------cccchhhhHHHHH
Confidence 6678899999999
Q ss_pred HHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCC
Q psy12605 718 AISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHEN 797 (845)
Q Consensus 718 ~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~ 797 (845)
++++++ ..+++....+.+.|+++.+++++...+.+++..++++|.++...++.. ....+.+.|+++.|..++.+++
T Consensus 295 ~L~~l~-~~~~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~---~~~~l~~~~~i~~L~~ll~~~d 370 (434)
T d1q1sc_ 295 TMSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVE---QIVYLVHCGIIEPLMNLLSAKD 370 (434)
T ss_dssp HHHHHT-TSCHHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHH---HHHHHHHTTCHHHHHHHTTSSC
T ss_pred HHhhhc-cccchhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHH---HHHHHHHCCcHHHHHHHhcCCC
Confidence 999999 567888888889999999999999999999999999999999876543 3456778999999999999999
Q ss_pred HHHHHHHHHHHHHhcCcc
Q psy12605 798 VEIYKLAYDIIERYFSEV 815 (845)
Q Consensus 798 ~~v~~~a~~~l~~~~~~~ 815 (845)
+++...+.+.|.+++...
T Consensus 371 ~~~~~~~l~~l~~ll~~~ 388 (434)
T d1q1sc_ 371 TKIIQVILDAISNIFQAA 388 (434)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998887543
|
| >d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin alpha species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=4.8e-28 Score=274.31 Aligned_cols=369 Identities=32% Similarity=0.528 Sum_probs=322.3
Q ss_pred CccchhhHhhcCCchhhHHHHHHHHHHhhc-CChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 325 DALSHFPALLTHPKEKICKEAVWFLSNITA-GNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 325 ~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~-~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
..++.++..+.+.+...+..++..+.++.. ......+.+++.|++|.|++++... .++.++..|+|+|++++.++
T Consensus 76 ~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~----~~~~iq~~a~~~L~ni~~~~ 151 (503)
T d1wa5b_ 76 QELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMREN----QPEMLQLEAAWALTNIASGT 151 (503)
T ss_dssp CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTT----SCHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCC----CCHHHHHHHHHHHHHHHcCC
Confidence 457788888899999999999999998754 3334567889999999999999875 47889999999999999999
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHH
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVN 483 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~n 483 (845)
+.....+.+.|+++.++.++.+++.+++..|+|+|+|++.+++..+..+.+.|+++.|+.++.+.. .++.+.++|+++|
T Consensus 152 ~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~-~~~~~~~~~~l~n 230 (503)
T d1wa5b_ 152 SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNK-PSLIRTATWTLSN 230 (503)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCC-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCC-HHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998655 4789999999999
Q ss_pred hhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH-HH-HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccc
Q psy12605 484 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY-LW-LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQ 561 (845)
Q Consensus 484 L~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~-~~-l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~ 561 (845)
+|++..+.+....+.++++.+..++.+.|+++... +| +.+++...
T Consensus 231 l~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~--------------------------------- 277 (503)
T d1wa5b_ 231 LCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGP--------------------------------- 277 (503)
T ss_dssp HHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSC---------------------------------
T ss_pred HhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCC---------------------------------
Confidence 99998778888888999999999999999887765 56 66655432
Q ss_pred ccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhh
Q psy12605 562 HSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKI 641 (845)
Q Consensus 562 l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~ 641 (845)
++....+.+.|+++.++.++.++++.++..++++++|++.++......+++.|+++.+..++
T Consensus 278 -----------~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll------- 339 (503)
T d1wa5b_ 278 -----------QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLL------- 339 (503)
T ss_dssp -----------HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHT-------
T ss_pred -----------chhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHh-------
Confidence 33335667778888899999999999999999999999999998888999999999998877
Q ss_pred hhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHh
Q psy12605 642 LNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISN 721 (845)
Q Consensus 642 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 721 (845)
.+.++.++++++|++.|
T Consensus 340 ---------------------------------------------------------------~~~~~~i~~~~~~~l~n 356 (503)
T d1wa5b_ 340 ---------------------------------------------------------------SSPKENIKKEACWTISN 356 (503)
T ss_dssp ---------------------------------------------------------------TCSCHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------------cCCCHHHHHHHHHHHHH
Confidence 56788999999999999
Q ss_pred hcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHH
Q psy12605 722 LTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIY 801 (845)
Q Consensus 722 l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~ 801 (845)
++ .++++....+.+.|+++.++.++...+.+++..+.++|.++...+... ......+.+.|++..|..++.+.+.++.
T Consensus 357 l~-~~~~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~-~~~~~~l~~~~~l~~l~~~L~~~d~~~~ 434 (503)
T d1wa5b_ 357 IT-AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQR-PDIIRYLVSQGCIKPLCDLLEIADNRII 434 (503)
T ss_dssp HT-TSCHHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTC-THHHHHHHHTTCHHHHHHHTTTCCHHHH
T ss_pred Hh-hccHHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhccccc-HHHHHHHHHCCcHHHHHHHhcCCCHHHH
Confidence 98 678889999999999999999999999999999999999999765432 1234667789999999999999999999
Q ss_pred HHHHHHHHHhcCc
Q psy12605 802 KLAYDIIERYFSE 814 (845)
Q Consensus 802 ~~a~~~l~~~~~~ 814 (845)
..+.+.|.+++..
T Consensus 435 ~~~L~~l~~ll~~ 447 (503)
T d1wa5b_ 435 EVTLDALENILKM 447 (503)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9988888887743
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=2.6e-25 Score=246.40 Aligned_cols=360 Identities=17% Similarity=0.127 Sum_probs=235.8
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
+.||.||++| .+++|++|..|+++|.++|.++++++..+++.|+||.|+++|++++++++..|+++|++|+.++++++.
T Consensus 2 ~~ip~lv~~L-~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~ 80 (457)
T d1xm9a1 2 LTIPKAVQYL-SSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKL 80 (457)
T ss_dssp CCHHHHHHHH-HSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHH
T ss_pred CCHHHHHHHh-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHH
Confidence 4699999999 477899999999999999998899999999999999999999999999999999999999998999999
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHH-HHHhhhChh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW-LSIIEKNPQ 246 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~-~~l~~~~~~ 246 (845)
.+.+.|+++.++.++.+..+..++..++++|.+++..... ........++.+...+..+......... ......+
T Consensus 81 ~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-- 156 (457)
T d1xm9a1 81 ETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL--KEELIADALPVLADRVIIPFSGWCDGNSNMSREVVD-- 156 (457)
T ss_dssp HHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSST--HHHHHHHHHHHHHHHTTHHHHTCC---------CCC--
T ss_pred HHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhh--HHHHHhcccHHHHHHHHhhhhhhhcchhhhhccccc--
Confidence 9999999999999998877888999999999999987632 2223334444444433211000000000 0000011
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCc------hhhHHHHHHHHHHHhcCChh----
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKE------VKVQTASLRAVGNIVTGTDE---- 316 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~------~~v~~~al~~L~nl~~~~~~---- 316 (845)
..++..+++++..++..+..........|+++.++.++.+.. ......+...+.+.......
T Consensus 157 --------~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 228 (457)
T d1xm9a1 157 --------PEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT 228 (457)
T ss_dssp --------HHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCC
T ss_pred --------HHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHH
Confidence 227888999999998877666556656788999999985421 22333444444443211000
Q ss_pred -hHHHHh---cCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHH
Q psy12605 317 -QTQVIL---NCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEA 392 (845)
Q Consensus 317 -~~~~i~---~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a 392 (845)
...... ...........+............................+...++++.++.++... .++.++..+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~----~~~~~~~~~ 304 (457)
T d1xm9a1 229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKS----KKDATLEAC 304 (457)
T ss_dssp HHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHC----CCHHHHHHH
T ss_pred HHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcc----cchHHHHHH
Confidence 000000 001111111122211111111111222222223333334455567788899988876 578999999
Q ss_pred HHHHHHHhcCChH-----hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccC
Q psy12605 393 AWALTNIASGTSA-----QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK 466 (845)
Q Consensus 393 ~~~L~~l~~~~~~-----~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~ 466 (845)
.+++.+++..... ....+.+.|+++.|++++.+++++++..++++|++++.+.. .++.+.+ ++++.++.++.
T Consensus 305 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~-~~~~i~~-~~i~~li~~L~ 381 (457)
T d1xm9a1 305 AGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPL-LHRVMGN-QVFPEVTRLLT 381 (457)
T ss_dssp HHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGG-GHHHHHH-HTHHHHHHTTT
T ss_pred HHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChh-HHHHHHH-hhHHHHHHHHh
Confidence 9999999875542 24455677999999999999999999999999999987653 3444332 44555555554
|
| >d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Plakophilin 1 helical region domain: Plakophilin 1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.6e-23 Score=230.08 Aligned_cols=414 Identities=16% Similarity=0.169 Sum_probs=283.6
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+|.+| ++|++++|+++..|+.+|.+++..+ +.....+.+.|+||.|+++| .++++++|..|+++|.+++.++++++
T Consensus 3 ~ip~lv-~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL-~~~~~~v~~~a~~aL~~L~~~~~~~~ 79 (457)
T d1xm9a1 3 TIPKAV-QYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLL-RSPNQNVQQAAAGALRNLVFRSTTNK 79 (457)
T ss_dssp CHHHHH-HHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHT-TSSCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHHHH-HHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHH-CCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence 578999 9999999999999999999987544 45788999999999999999 57889999999999999998889999
Q ss_pred HHHHHcCChHHHHHhhCC-CChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhh---------------cCCCCH
Q psy12605 125 QEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFI---------------KPDIPI 188 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s-~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll---------------~~~~~~ 188 (845)
..+.+.|+++.|++++.+ .+++++..|+++|++++.+. ..+......| ++.++..+ ......
T Consensus 80 ~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (457)
T d1xm9a1 80 LETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTD-ELKEELIADA-LPVLADRVIIPFSGWCDGNSNMSREVVDP 157 (457)
T ss_dssp HHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSS-STHHHHHHHH-HHHHHHHTTHHHHTCC---------CCCH
T ss_pred HHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhh-hhHHHHHhcc-cHHHHHHHHhhhhhhhcchhhhhcccccH
Confidence 999999999999999865 57889999999999999764 3444444444 33333322 123356
Q ss_pred HHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 189 SFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 189 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
.++..+++++.+++.+.+.........++++.++.++.+........ . .....+...+...
T Consensus 158 ~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~---------~----------~~~~~~~~~l~~~ 218 (457)
T d1xm9a1 158 EVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCD---------D----------KSVENCMCVLHNL 218 (457)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTT---------C----------TTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhH---------H----------HHHHHHHHHHhhh
Confidence 88999999999998876443333334577888888876432110000 0 0111122222211
Q ss_pred hcCCh-----hhHHHHH---hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcC-Cch
Q psy12605 269 TDGGN-----DQIQMVI---DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTH-PKE 339 (845)
Q Consensus 269 ~~~~~-----~~~~~~~---~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~-~~~ 339 (845)
..... ....... ...........+............................+...++++.++.++.+ .++
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~ 298 (457)
T d1xm9a1 219 SYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKD 298 (457)
T ss_dssp TTTHHHHSCCHHHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCH
T ss_pred hhhhHHHHHHHHHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccch
Confidence 11000 0000000 00001111111111111111111111111112223344555566788888888854 567
Q ss_pred hhHHHHHHHHHHhhcCChH-----HHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcC
Q psy12605 340 KICKEAVWFLSNITAGNQA-----QVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG 414 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~~~-----~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g 414 (845)
..+..+.+++.+++.+... ....+.+.++++.|+.++.+. ++.++..+++++++++.+. +.+..+ ..+
T Consensus 299 ~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-----~~~v~~~a~~~l~~La~~~-~~~~~i-~~~ 371 (457)
T d1xm9a1 299 ATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-----NSDVVRSGASLLSNMSRHP-LLHRVM-GNQ 371 (457)
T ss_dssp HHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-----CHHHHHHHHHHHHHHHTSG-GGHHHH-HHH
T ss_pred HHHHHHHHHHHHHhhccccchHHHHHHHHHHcCChHHHHhhhcCc-----cHHHHHHHHHHHHHHhhCh-hHHHHH-HHh
Confidence 8888999999998765432 223345689999999999874 8899999999999998754 344444 457
Q ss_pred ChHHHHHhhCCC------CHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 415 AVPLFLRLLMSP------HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 415 ~i~~Lv~lL~~~------~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+++.++.++... +++++..++.+|++++.+++..+..+.+.|+++.|+.++.+..+..+.+.++++|++|+.++
T Consensus 372 ~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~ 451 (457)
T d1xm9a1 372 VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSK 451 (457)
T ss_dssp THHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSST
T ss_pred hHHHHHHHHhccccCcCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCH
Confidence 899999999643 35799999999999999999999999999999999999998888889999999999998766
Q ss_pred C
Q psy12605 489 D 489 (845)
Q Consensus 489 ~ 489 (845)
+
T Consensus 452 ~ 452 (457)
T d1xm9a1 452 E 452 (457)
T ss_dssp T
T ss_pred h
Confidence 3
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.85 E-value=2.9e-18 Score=197.03 Aligned_cols=571 Identities=13% Similarity=0.103 Sum_probs=383.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhc--CChhh
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIAS--GTSAQ 123 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~--~~~~~ 123 (845)
+..++ +.|.++|+..|..|++.|..+...-.. .-....++|.|.+.++ ++.+++..++..|.++.. +.+++
T Consensus 12 i~~l~-~~l~~~~~~~R~~a~~~l~~ia~~lg~----~~~~~~lip~l~~~~~--~~~ev~~~~~~~l~~~~~~~~~~~~ 84 (588)
T d1b3ua_ 12 IAVLI-DELRNEDVQLRLNSIKKLSTIALALGV----ERTRSELLPFLTDTIY--DEDEVLLALAEQLGTFTTLVGGPEY 84 (588)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHTHHHHHHHSCH----HHHHHTHHHHHHHTCC--CCHHHHHHHHHHHTTCSGGGTSGGG
T ss_pred HHHHH-HHhcCCCHHHHHHHHHHHHHHHHHhCc----HhhHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHcCChhH
Confidence 34466 889999999999999999887553211 1112457999999984 345788888888877653 23443
Q ss_pred HHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhc
Q psy12605 124 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 124 ~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~ 203 (845)
.. ..++.+..++.+++..+|+.|+.+|+.++...+. .. .+.-.+|.+..+..++ ....+..|+..+..+..
T Consensus 85 ~~-----~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~~~~~~--~~-~~~~l~p~i~~L~~~~-~~~~r~~a~~ll~~~~~ 155 (588)
T d1b3ua_ 85 VH-----CLLPPLESLATVEETVVRDKAVESLRAISHEHSP--SD-LEAHFVPLVKRLAGGD-WFTSRTSACGLFSVCYP 155 (588)
T ss_dssp GG-----GGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH--HH-HHHTHHHHHHHHHTCS-SHHHHHHHGGGHHHHTT
T ss_pred HH-----HHHHHHHHHccCCCHHHHHHHHHHHHHHHHhCCH--HH-HHHHHHHHHHHHhccc-chHHHHHHHHHHHHHHH
Confidence 32 3678888889999999999999999999865321 11 2222345444555554 55677788888888765
Q ss_pred CCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcC
Q psy12605 204 NKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSG 283 (845)
Q Consensus 204 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g 283 (845)
.. ........++.+.+++.+.++. ++..++.++..++..-.. ......
T Consensus 156 ~~----~~~~~~~l~~~~~~l~~D~~~~-------------------------VR~~a~~~l~~~~~~~~~---~~~~~~ 203 (588)
T d1b3ua_ 156 RV----SSAVKAELRQYFRNLCSDDTPM-------------------------VRRAAASKLGEFAKVLEL---DNVKSE 203 (588)
T ss_dssp TS----CHHHHHHHHHHHHHHHTCSCHH-------------------------HHHHHHHHHHHHHHTSCH---HHHHHT
T ss_pred Hh----hHHHHHHHHHHHHHHhccCCHH-------------------------HHHHHHHHHHHHHHHhcH---HHHHHH
Confidence 43 2234556788888888888888 889999999888765332 122456
Q ss_pred chhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH
Q psy12605 284 VVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV 363 (845)
Q Consensus 284 ~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l 363 (845)
+++.+..++.++++.++..|+.++..++..-+.. ......++.+..++.+.+..+|..++.+|.+++.... ...
T Consensus 204 l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~---~~~ 277 (588)
T d1b3ua_ 204 IIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG---PEI 277 (588)
T ss_dssp HHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC---HHH
T ss_pred HHHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh---hhh
Confidence 7788888889999999999999999987532221 1112357888888889999999999999999854322 223
Q ss_pred HhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC-hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q psy12605 364 IDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT-SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNII 442 (845)
Q Consensus 364 ~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~ 442 (845)
....+++.+..++.+. +++++..++.++..++..- ........-...++.+..++.+.++.++..++.++..++
T Consensus 278 ~~~~l~~~l~~ll~d~-----~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~ 352 (588)
T d1b3ua_ 278 TKTDLVPAFQNLMKDC-----EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLS 352 (588)
T ss_dssp HHHTHHHHHHHHHTCS-----SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGH
T ss_pred hhhhhhHHHHHHHhcc-----chHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhh
Confidence 3456788888888874 7899999999999988632 222333344567888999999999999999998888776
Q ss_pred cCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHHHH
Q psy12605 443 GDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLS 522 (845)
Q Consensus 443 ~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~l~ 522 (845)
..- ...-.....++.+..++.+. +.+++..+...+..+..... ........++.+..++.+.+..++..+.
T Consensus 353 ~~~---~~~~~~~~l~p~l~~~l~d~-~~~v~~~~~~~l~~~~~~~~---~~~~~~~ll~~l~~~~~d~~~~~r~~~~-- 423 (588)
T d1b3ua_ 353 PIL---GKDNTIEHLLPLFLAQLKDE-CPEVRLNIISNLDCVNEVIG---IRQLSQSLLPAIVELAEDAKWRVRLAII-- 423 (588)
T ss_dssp HHH---CHHHHHHHTHHHHHHHHTCS-CHHHHHHHHTTCHHHHHHSC---HHHHHHHHHHHHHHHHTCSSHHHHHHHH--
T ss_pred hcc---chhHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHHHHHhhcc---hhhhhhHHHHHHHHHHhcccHHHHHHHH--
Confidence 311 11111223567777777644 34667676666665554221 1223355777777777777666655422
Q ss_pred hhhcCchhhHHHHhhhhhhHHHHhhhccCCCCcccccccccccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHH
Q psy12605 523 IIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKE 602 (845)
Q Consensus 523 ~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~ 602 (845)
..+..+...+.... ....+.+.+..++.++...||..
T Consensus 424 ----------------~~l~~l~~~~~~~~---------------------------~~~~l~~~l~~~l~D~~~~VR~~ 460 (588)
T d1b3ua_ 424 ----------------EYMPLLAGQLGVEF---------------------------FDEKLNSLCMAWLVDHVYAIREA 460 (588)
T ss_dssp ----------------HHHHHHHHHHCGGG---------------------------CCHHHHHHHHHGGGCSSHHHHHH
T ss_pred ----------------HHHHHHHHHcChHh---------------------------HHHHHHHHHHhhccCCchhHHHH
Confidence 00111111111000 01112355667788888999999
Q ss_pred HHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccc
Q psy12605 603 AVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPL 682 (845)
Q Consensus 603 a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 682 (845)
|+++++.++..... ......++|.+.+.+
T Consensus 461 A~~~L~~l~~~~~~---~~~~~~i~~~l~~~~------------------------------------------------ 489 (588)
T d1b3ua_ 461 ATSNLKKLVEKFGK---EWAHATIIPKVLAMS------------------------------------------------ 489 (588)
T ss_dssp HHHHHHHHHHHHCH---HHHHHHTHHHHHHTT------------------------------------------------
T ss_pred HHHHHHHHHHHhCc---HHHHHHHHHHHHHHh------------------------------------------------
Confidence 99999998742110 011222445444433
Q ss_pred hhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHH
Q psy12605 683 RVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGI 762 (845)
Q Consensus 683 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L 762 (845)
.+.++..|..++.++..+.....+ .......++.+..+++++.+.|+.+++.+|
T Consensus 490 ----------------------~~~~~~~R~~~~~~l~~l~~~~~~----~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l 543 (588)
T d1b3ua_ 490 ----------------------GDPNYLHRMTTLFCINVLSEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSL 543 (588)
T ss_dssp ----------------------TCSCHHHHHHHHHHHHHHHHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHH
T ss_pred ----------------------cCCCHHHHHHHHHHHHHHHHHcCh----HHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 567778888888888888622222 223456899999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHh
Q psy12605 763 NNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERY 811 (845)
Q Consensus 763 ~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~ 811 (845)
..+....+.. .......+.|+.|+++++.+|+..|.+.++..
T Consensus 544 ~~i~~~~~~~-------~~~~~i~~~l~~L~~D~d~dVr~~A~~al~~l 585 (588)
T d1b3ua_ 544 QKIGPILDNS-------TLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585 (588)
T ss_dssp HHHGGGSCHH-------HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHcCcH-------hHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 9997665432 11223457888999999999999999998764
|
| >d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.75 E-value=4.4e-16 Score=178.59 Aligned_cols=533 Identities=14% Similarity=0.142 Sum_probs=352.1
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcC-ChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCC--ChhhH
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASG-TSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD--GPQLR 166 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~-~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~--~~~~r 166 (845)
+..|++-|+ ++++.+|..|+..|..++.. .++... ...+|.|..++++. ++++..++..|+++... +++..
T Consensus 12 i~~l~~~l~-~~~~~~R~~a~~~l~~ia~~lg~~~~~----~~lip~l~~~~~~~-~ev~~~~~~~l~~~~~~~~~~~~~ 85 (588)
T d1b3ua_ 12 IAVLIDELR-NEDVQLRLNSIKKLSTIALALGVERTR----SELLPFLTDTIYDE-DEVLLALAEQLGTFTTLVGGPEYV 85 (588)
T ss_dssp HHHHHHHTT-CSCHHHHHHHHHTHHHHHHHSCHHHHH----HTHHHHHHHTCCCC-HHHHHHHHHHHTTCSGGGTSGGGG
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCcHhhH----HHHHHHHHHHhcCc-HHHHHHHHHHHHHHHHHcCChhHH
Confidence 455788884 67899999999999988751 122221 35789999988765 56777888888887632 22221
Q ss_pred HHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChh
Q psy12605 167 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQ 246 (845)
Q Consensus 167 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~ 246 (845)
...++.+..++..+ +..+|..|+.++..++....+ .......+|.+..+..++...
T Consensus 86 -----~~ll~~l~~l~~~~-~~~Vr~~a~~~l~~i~~~~~~---~~~~~~l~p~i~~L~~~~~~~--------------- 141 (588)
T d1b3ua_ 86 -----HCLLPPLESLATVE-ETVVRDKAVESLRAISHEHSP---SDLEAHFVPLVKRLAGGDWFT--------------- 141 (588)
T ss_dssp -----GGGHHHHHHHTTSS-CHHHHHHHHHHHHHHHTTSCH---HHHHHTHHHHHHHHHTCSSHH---------------
T ss_pred -----HHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHhcccchH---------------
Confidence 12355666666555 557999999999999875421 222344566666666655444
Q ss_pred hHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCc
Q psy12605 247 ISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDA 326 (845)
Q Consensus 247 ~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~ 326 (845)
.+..|+..+..+........ ...+++.+..++.++++.+|..|+.+++.++..-+. .......
T Consensus 142 ----------~r~~a~~ll~~~~~~~~~~~----~~~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~---~~~~~~l 204 (588)
T d1b3ua_ 142 ----------SRTSACGLFSVCYPRVSSAV----KAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLEL---DNVKSEI 204 (588)
T ss_dssp ----------HHHHHGGGHHHHTTTSCHHH----HHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCH---HHHHHTH
T ss_pred ----------HHHHHHHHHHHHHHHhhHHH----HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcH---HHHHHHH
Confidence 56667776776655433221 223567788888999999999999999999865322 1222356
Q ss_pred cchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHh
Q psy12605 327 LSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQ 406 (845)
Q Consensus 327 l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~ 406 (845)
++.+..+++++++.+|..|+.++..++...+.. -....++|.+..++.+ .++.+|..++.+++.++..-.
T Consensus 205 ~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~~---~~~~~i~~~l~~~~~D-----~~~~Vr~~~~~~l~~l~~~~~-- 274 (588)
T d1b3ua_ 205 IPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DLEALVMPTLRQAAED-----KSWRVRYMVADKFTELQKAVG-- 274 (588)
T ss_dssp HHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HHHHHTHHHHHHHHTC-----SSHHHHHHHHHTHHHHHHHHC--
T ss_pred HHHHHHHhcCCchhhHHHHHHHHHHhhccCCHH---HHHHHHHHHHHHhccc-----ccHHHHHHHHHhHHHHHHHhh--
Confidence 788888889999999999999999886543221 1223467788887766 478999999999999875211
Q ss_pred HHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhh
Q psy12605 407 TQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLC 485 (845)
Q Consensus 407 ~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~-~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~ 485 (845)
........++.+..++.+.+++++..++.+++.++..- ........-...++.+...+.+ .+..++..++.++..++
T Consensus 275 -~~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d-~~~~vr~~~~~~l~~~~ 352 (588)
T d1b3ua_ 275 -PEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSD-ANQHVKSALASVIMGLS 352 (588)
T ss_dssp -HHHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTC-SCHHHHHHHHTTGGGGH
T ss_pred -hhhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcC-CChHHHHHHHHHHhhhh
Confidence 12334467899999999999999999999999987632 2222222333455666666554 34466777777666665
Q ss_pred cCCCCCCChhHHHhHHHHHHHhhcCCChhHHHHHH--HHhhhcCchhhHHHHhhhhhhHHHHhhhccCCCCccccccccc
Q psy12605 486 RNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW--LSIIEKNPQISKILVSKMKVCSRYLYYLSHNSGPMSCQKKQHS 563 (845)
Q Consensus 486 ~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~--l~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~l~ 563 (845)
... .........+|.+..++.+.++++...+. +..+.. .+
T Consensus 353 ~~~---~~~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~--------------------~~--------------- 394 (588)
T d1b3ua_ 353 PIL---GKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNE--------------------VI--------------- 394 (588)
T ss_dssp HHH---CHHHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHH--------------------HS---------------
T ss_pred hcc---chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHh--------------------hc---------------
Confidence 322 11234456778888888887777765432 111100 00
Q ss_pred ccccccCCChhhHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHHHHHHHHCCChHHHHHHhhhhhhhhhh
Q psy12605 564 IYMCVSPGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKRSCKILN 643 (845)
Q Consensus 564 ~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~ 643 (845)
+.... ...+++.+..++++++..+|..++.++..++.. +-..-..+.+..++
T Consensus 395 -------~~~~~-----~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~-------~~~~~~~~~l~~~l--------- 446 (588)
T d1b3ua_ 395 -------GIRQL-----SQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQ-------LGVEFFDEKLNSLC--------- 446 (588)
T ss_dssp -------CHHHH-----HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-------HCGGGCCHHHHHHH---------
T ss_pred -------chhhh-----hhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-------cChHhHHHHHHHHH---------
Confidence 00001 112456777888888999999999998877531 10111112222222
Q ss_pred hcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhccCCCCCccchhHHHHHHHhhc
Q psy12605 644 KYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMFFPQGEFQTQKEAAWAISNLT 723 (845)
Q Consensus 644 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~ 723 (845)
...+.+....+|..|+.+++.++
T Consensus 447 ---------------------------------------------------------~~~l~D~~~~VR~~A~~~L~~l~ 469 (588)
T d1b3ua_ 447 ---------------------------------------------------------MAWLVDHVYAIREAATSNLKKLV 469 (588)
T ss_dssp ---------------------------------------------------------HHGGGCSSHHHHHHHHHHHHHHH
T ss_pred ---------------------------------------------------------HhhccCCchhHHHHHHHHHHHHH
Confidence 01125667789999999999997
Q ss_pred ccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChHHHHHhhhcCCCHHHHHH
Q psy12605 724 ISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADAQVETLANMIEECGGLDKIEMLQNHENVEIYKL 803 (845)
Q Consensus 724 ~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~~~~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~ 803 (845)
....++ .....+++.+..++++.+...+..++.++..+....+.. ......++.|..+..++.+.|+..
T Consensus 470 ~~~~~~----~~~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~~~~~-------~~~~~ilp~ll~~~~D~v~nVR~~ 538 (588)
T d1b3ua_ 470 EKFGKE----WAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQD-------ITTKHMLPTVLRMAGDPVANVRFN 538 (588)
T ss_dssp HHHCHH----HHHHHTHHHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHH-------HHHHHTHHHHHHGGGCSCHHHHHH
T ss_pred HHhCcH----HHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcChH-------HHHHHHHHHHHHHcCCCCHHHHHH
Confidence 432332 123457888899999999999999999999988654432 122346778888899999999999
Q ss_pred HHHHHHHhcCcc
Q psy12605 804 AYDIIERYFSEV 815 (845)
Q Consensus 804 a~~~l~~~~~~~ 815 (845)
|.+.|.+++..-
T Consensus 539 a~~~l~~i~~~~ 550 (588)
T d1b3ua_ 539 VAKSLQKIGPIL 550 (588)
T ss_dssp HHHHHHHHGGGS
T ss_pred HHHHHHHHHHHc
Confidence 999888876543
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=8.3e-17 Score=164.09 Aligned_cols=194 Identities=16% Similarity=0.184 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHh-hccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhc
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIP-LLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLT 335 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~-lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~ 335 (845)
.+..|+.+|.++++. .+....+...|+++.++. ++.++++.++..|+.+|++++.+++..+..+.+.|+++.|+.++.
T Consensus 33 ~~~~Al~~L~~L~~~-~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~lL~ 111 (264)
T d1xqra1 33 EREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLD 111 (264)
T ss_dssp HHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-HHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHhh
Confidence 778899999999964 445567778999998875 778899999999999999999998888889999999999999995
Q ss_pred -CCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcC
Q psy12605 336 -HPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAG 414 (845)
Q Consensus 336 -~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g 414 (845)
+.++.++..++++|++++.+.+.....+...|+++.|+.++.+. ++.++..+++++.+++.++++....+.+.|
T Consensus 112 ~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~-----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 186 (264)
T d1xqra1 112 RDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQ-----VQKLKVKSAFLLQNLLVGHPEHKGTLCSMG 186 (264)
T ss_dssp HCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSS-----CHHHHHHHHHHHHHHHHHCGGGHHHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcC-----chHHHHHHHHHHHHHHhccHHHHHHHHHhh
Confidence 56788999999999999999999989999999999999999884 889999999999999999999999999999
Q ss_pred ChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCC
Q psy12605 415 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMG 456 (845)
Q Consensus 415 ~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g 456 (845)
+++.|+.++.+++++++..|+++|++++.+++..+..+...+
T Consensus 187 ~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~~ 228 (264)
T d1xqra1 187 MVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPE 228 (264)
T ss_dssp HHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGG
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHhh
Confidence 999999999999999999999999999999988776665443
|
| >d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HspBP1 domain domain: Hsp70-binding protein 1 (HspBP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=2.9e-17 Score=167.51 Aligned_cols=197 Identities=14% Similarity=0.171 Sum_probs=177.0
Q ss_pred CChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHH-hhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHH
Q psy12605 101 DRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLR-LLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLL 179 (845)
Q Consensus 101 ~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~-lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv 179 (845)
.+.+.+..|+.+|.+++. +.+++..+...|++++++. ++++++++++..|+++|++++.+++..+..+.+.|+++.|+
T Consensus 29 ~~~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv 107 (264)
T d1xqra1 29 ADQQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL 107 (264)
T ss_dssp HHHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence 345788999999999995 5888999999999999986 78899999999999999999999999999999999999999
Q ss_pred hhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHH
Q psy12605 180 SFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILV 259 (845)
Q Consensus 180 ~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 259 (845)
.++.++.+..+++.++++|.+++++.++........++++.|++++.+.++. ++.
T Consensus 108 ~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~-------------------------~~~ 162 (264)
T d1xqra1 108 RLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQK-------------------------LKV 162 (264)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHH-------------------------HHH
T ss_pred HHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchH-------------------------HHH
Confidence 9998766778999999999999998866666667789999999999999888 899
Q ss_pred HHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhc
Q psy12605 260 DTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN 323 (845)
Q Consensus 260 ~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~ 323 (845)
.++++|.+++..+++....+.+.|+++.|+.+|.++++.++..|+.+|++++..++.....+..
T Consensus 163 ~a~~~L~~l~~~~~~~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~ 226 (264)
T d1xqra1 163 KSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE 226 (264)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred HHHHHHHHHHhccHHHHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 9999999999888888888999999999999999999999999999999999887776655544
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=3.4e-16 Score=188.71 Aligned_cols=619 Identities=16% Similarity=0.177 Sum_probs=338.1
Q ss_pred CHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHH-HHH---cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChh
Q psy12605 89 ILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQE-VVA---AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ 164 (845)
Q Consensus 89 ~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~-i~~---~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~ 164 (845)
++|.|++.+. ++++..+..|+.+|..++....+.... ..+ ...+|.+++.++++++.++..|+.++..+....+.
T Consensus 127 ll~~L~~~l~-s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~~vr~~al~~l~~~~~~~~~ 205 (888)
T d1qbkb_ 127 LLPKLCSLLD-SEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 205 (888)
T ss_dssp TSTTTTTSST-GGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSSCSSSTTTHHHHGGGGCCCS
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhhH
Confidence 6777788773 455667778888999988532222111 111 23789999999999999999999999988755432
Q ss_pred hHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHH---h
Q psy12605 165 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSI---I 241 (845)
Q Consensus 165 ~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l---~ 241 (845)
.-....+ ..++.+......+ +.+++..++.+|..+...... .-.....+.++.+...+.+.+++++..+.+.+ +
T Consensus 206 ~~~~~~~-~~l~~l~~~~~~~-~~~vr~~~~~~l~~l~~~~~~-~l~~~l~~i~~~~l~~~~~~~e~v~~~a~ef~~~~~ 282 (888)
T d1qbkb_ 206 ALMLHID-SFTENLFALAGDE-EPEVRKNVCRALVMLLEVRMD-RLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLA 282 (888)
T ss_dssp TTCSHHH-HCSHHHHTTSSCC-CSSSTTHHHHTTTTTSCSCTT-TTTTTTTTTTTTTTTTTTSSCHHHHHHHHHHHCCCC
T ss_pred HHHHHHH-HHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 1111111 2566777766655 347888899998887765421 11122345556666666677777666655322 1
Q ss_pred hhC----------hhhHHhhhhh---------------------------------------------------------
Q psy12605 242 EKN----------PQISKILVSK--------------------------------------------------------- 254 (845)
Q Consensus 242 ~~~----------~~~~~~~~~~--------------------------------------------------------- 254 (845)
... +.+...+...
T Consensus 283 e~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (888)
T d1qbkb_ 283 EQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPRFHRSRTVAQQHDEDGIEEEDDDDDEI 362 (888)
T ss_dssp SGGGGTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCCCCCCCCCCCCCTTC-----CHHHHTT
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhh
Confidence 100 0000000000
Q ss_pred --------HHHHHHHHHHHHHhhcCChh-hHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCC
Q psy12605 255 --------MKILVDTVWALSYLTDGGND-QIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCD 325 (845)
Q Consensus 255 --------~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~ 325 (845)
..++..+..+|..++....+ ... -+++.+...+.++++..+.+|+.+++.++.+........+. .
T Consensus 363 ~~~~~~~~~~~r~~a~~~L~~l~~~~~~~il~-----~~l~~l~~~l~s~~~~~reaa~~alg~i~eg~~~~~~~~l~-~ 436 (888)
T d1qbkb_ 363 DDDDTISDWNLRKCSAAALDVLANVYRDELLP-----HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPYLP-E 436 (888)
T ss_dssp CCCSTTSCCSSHHHHHHHSTTTTTTCCSSSHH-----HHHHHHHHTTTSSSHHHHHHHHHHHHHHTTTSHHHHTTTHH-H
T ss_pred hhhhhhhhhhHHHHHHHHHhhHhhhhHHHHHH-----HHHHHHHHhhccchhHHHHHHHHHhhhhhhhHHHHhcccch-h
Confidence 00223334444444432211 111 12344555667888999999999999998765332111111 3
Q ss_pred ccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 326 ALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 326 ~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
+++.++..+.++++.+|..++|+|+.++.........-.-..+++.++..+.+ .++.++..|++++.+++.....
T Consensus 437 li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~ll~~l~d-----~~~~V~~~a~~al~~l~~~~~~ 511 (888)
T d1qbkb_ 437 LIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILD-----SNKRVQEAACSAFATLEEEACT 511 (888)
T ss_dssp HHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHHTTTHHHHHHHHHSS-----SCHHHHHHHHHHHHHHHHHHTT
T ss_pred hhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHHhhh
Confidence 67788888999999999999999998854211111111234567778877776 3789999999999998753221
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC------ChHHHHHHHhCCChHHHHhccCCC-CChhHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD------GPQLRDYVINMGVVPPLLSFIKPD-IPISFLRNVT 478 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~------~~~~~~~l~~~g~l~~L~~ll~~~-~~~~~~~~~~ 478 (845)
...... ...++.++..+.......+..+..+++.++.. .+..-. ..++.+....... .+........
T Consensus 512 ~l~p~~-~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~-----~l~~~l~~~~~~~~~~~~~~~~~l 585 (888)
T d1qbkb_ 512 ELVPYL-AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQ-----MLMPPLIQKWNMLKDEDKDLFPLL 585 (888)
T ss_dssp SSGGGH-HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHH-----HHHHHHHHHHTTSCTTCTTHHHHH
T ss_pred hhhhHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHH-----HHHHHHHHHHHhcccchHHHHHHH
Confidence 111111 12456678888887777777777777766531 111111 1234444443321 1112222333
Q ss_pred HHHHHhhcCCCCCCChhH----HHhHHHHHHHhh--------c-----CCChhHHHHHH--HHhhhcC-chhhHHHHhhh
Q psy12605 479 WVIVNLCRNKDPPPSMST----IIELLPALNILI--------H-----HHDTSVSIYLW--LSIIEKN-PQISKILVSKM 538 (845)
Q Consensus 479 ~~l~nL~~~~~~~~~~~~----~~~~l~~l~~ll--------~-----~~d~~v~~~~~--l~~l~~~-~~~~~~~~~~~ 538 (845)
.+++.++...... -... ...++..+...+ . ..+.+....++ ++.+... ......++...
T Consensus 586 e~l~~i~~~~~~~-~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~ 664 (888)
T d1qbkb_ 586 ECLSSVATALQSG-FLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARS 664 (888)
T ss_dssp HHHHHHHHHSTTT-THHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTS
T ss_pred HHHHHHHHHhHHH-HhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHh
Confidence 4455444432111 1111 122222222111 0 12333333322 2322221 11112223334
Q ss_pred hhhHHHHhhhccCCCCcccccccccccccccCCChh-hHHHHHhCCcccchHHhhcCCChhHHHHHHHHHhhhccCCHHH
Q psy12605 539 KVCSRYLYYLSHNSGPMSCQKKQHSIYMCVSPGTDE-QTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQ 617 (845)
Q Consensus 539 ~~~~~L~~ll~~~~~~~~~~~~~l~~l~nl~~~~~~-~~~~l~~~~~l~~L~~ll~~~~~~v~~~a~~~Lsnl~~~~~~~ 617 (845)
.+.+.++.++.+.+..+ ...+..+++.++..... ....+ ..+++.+..-++++.++++..|+|+++.|+......
T Consensus 665 ~l~~~l~~~l~~~~~~v--r~~a~~llgdl~~~~~~~~~~~l--~~~~~~l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~ 740 (888)
T d1qbkb_ 665 NILTLMYQCMQDKMPEV--RQSSFALLGDLTKACFQHVKPCI--ADFMPILGTNLNPEFISVCNNATWAIGEISIQMGIE 740 (888)
T ss_dssp CHHHHHHHHHTCSSHHH--HHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHTCCGGGHHHHHHHHHHHHHHHHHTGGG
T ss_pred hHHHHHHHHhCCCChHH--HHHHHHHHHHHHHhhhHHHHHHH--HHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 56666666666554432 23344445444321111 11111 124556666677778899999999999987543322
Q ss_pred HHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhh
Q psy12605 618 VQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFIS 697 (845)
Q Consensus 618 ~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (845)
.+.+++ .+++.|+.++++
T Consensus 741 ~~py~~-~il~~L~~il~~------------------------------------------------------------- 758 (888)
T d1qbkb_ 741 MQPYIP-MVLHQLVEIINR------------------------------------------------------------- 758 (888)
T ss_dssp GGGGSH-HHHHHHHHHHTC-------------------------------------------------------------
T ss_pred hhhhHH-HHHHHHHHHHcC-------------------------------------------------------------
Confidence 222221 133344444311
Q ss_pred hhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhcc-ccHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy12605 698 RFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSC-KDAQVIQVVLDGINNMLKMADAQVETL 776 (845)
Q Consensus 698 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~-~d~~~~~~al~~L~~l~~~~~~~~~~~ 776 (845)
......++..++.+++.++ ..+|+.....+. .++++++..|.. .|.+-+..+..+++.+++..+......
T Consensus 759 -------~~~~~~v~~n~~~~lgrl~-~~~p~~~~~~l~-~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~~~~~ 829 (888)
T d1qbkb_ 759 -------PNTPKTLLENTAITIGRLG-YVCPQEVAPMLQ-QFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSGVIQD 829 (888)
T ss_dssp -------TTCCHHHHHHHHHHHHHHH-HHCHHHHGGGGG-GTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGGTGGG
T ss_pred -------CCccHHHHHHHHHHHHHHH-HHCHHHHHhhHH-HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHHHHHH
Confidence 2333458889999999998 456766544443 578888888876 566668889999999998766542111
Q ss_pred HHHHHHhChHHHHHhhh--cCCCHHHHHHHHHHHHHhc
Q psy12605 777 ANMIEECGGLDKIEMLQ--NHENVEIYKLAYDIIERYF 812 (845)
Q Consensus 777 ~~~~~e~g~~~~L~~l~--~~~~~~v~~~a~~~l~~~~ 812 (845)
...| ..-+. ..+.++++.....+|..|-
T Consensus 830 l~~~--------~~~i~~~~~~~~~~~~~~~~~l~~~~ 859 (888)
T d1qbkb_ 830 FIFF--------CDAVASWINPKDDLRDMFCKILHGFK 859 (888)
T ss_dssp HHHH--------HHHHTTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHH--------HHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 1111 11111 2345678888888877654
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=2.8e-12 Score=159.38 Aligned_cols=643 Identities=12% Similarity=0.103 Sum_probs=370.5
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhH
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
.+..++ +.+++.|++.|+.|+..|.+.+..... ..+.-....+++.|+++| .+.++++|..|+.+|..++...++..
T Consensus 4 ~~~~ll-~k~~~~D~d~R~ma~~dl~~~l~~~~~-~~~~~~~~~i~~~ll~~L-~D~~~~Vq~~A~k~l~~l~~~~~~~~ 80 (1207)
T d1u6gc_ 4 HISNLL-EKMTSSDKDFRFMATNDLMTELQKDSI-KLDDDSERKVVKMILKLL-EDKNGEVQNLAVKCLGPLVSKVKEYQ 80 (1207)
T ss_dssp HHHHHH-HHTTCSSHHHHHHHHHHHHHHTSSSCC-SCCTTHHHHHHHHHHHHT-TCSSHHHHHHHHHHHHHHHTTSCHHH
T ss_pred hHHHHH-HhcCCCCHhHHHHHHHHHHHHHhhccc-ccChHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHHHhCcHhh
Confidence 356788 899999999999999999998864422 111122334799999999 57889999999999999987644322
Q ss_pred HHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCCh------hhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHH
Q psy12605 125 QEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP------QLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 198 (845)
Q Consensus 125 ~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~------~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L 198 (845)
+ ...++.|+..+.+++...+..+..+|..+...-+ .....+. ...++.+...+.+..+..++..++.++
T Consensus 81 --~--~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~-~~l~~~l~~~~~~~~~~~v~~~al~~l 155 (1207)
T d1u6gc_ 81 --V--ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC-KKITGRLTSAIAKQEDVSVQLEALDIM 155 (1207)
T ss_dssp --H--HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH-HHHHHHHHHHHSCCSCHHHHHHHHHHH
T ss_pred --H--HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHH-HHHHHHHHHhhcCCCCHHHHHHHHHHH
Confidence 1 2367888888888888999998888887753221 1111111 123455666666666778899999999
Q ss_pred HHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHH
Q psy12605 199 VNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQM 278 (845)
Q Consensus 199 ~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 278 (845)
..+....+... ......+++.+...+.++++. ++..|+.+|..++...++.
T Consensus 156 ~~l~~~~g~~l-~~~~~~il~~l~~~l~~~~~~-------------------------vR~~A~~~l~~l~~~~~~~--- 206 (1207)
T d1u6gc_ 156 ADMLSRQGGLL-VNFHPSILTCLLPQLTSPRLA-------------------------VRKRTIIALGHLVMSCGNI--- 206 (1207)
T ss_dssp HHHHHHTCSSC-TTTHHHHHHHHGGGGGCSSHH-------------------------HHHHHHHHHHHHTTTC------
T ss_pred HHHHHHhhHhh-HHHHHHHHHHHHHHhCCCCHH-------------------------HHHHHHHHHHHHHHHCCHH---
Confidence 98877553222 223457888888888888777 8899999999987654331
Q ss_pred HHhcCchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCCh
Q psy12605 279 VIDSGVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQ 357 (845)
Q Consensus 279 ~~~~g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~ 357 (845)
.-..+++.++..+ .+.+..++..++.+++.++...+...... -..+++.+...+.+.++++|..++.++..++...+
T Consensus 207 -~~~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~ 284 (1207)
T d1u6gc_ 207 -VFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP 284 (1207)
T ss_dssp --CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred -HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence 1124466666666 34456677778889998876543321111 12567888888899999999999998888765433
Q ss_pred HHHHHHHhcCChHHHHHHhhhc--------------------------------ccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 358 AQVQAVIDAGLLPKIIANLQKV--------------------------------GRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 358 ~~~~~l~~~~~i~~Lv~lL~~~--------------------------------~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
....... ..+++.+...+... ...+..+.++..++.++..++...++
T Consensus 285 ~~~~~~~-~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~ 363 (1207)
T d1u6gc_ 285 KEVYPHV-STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHE 363 (1207)
T ss_dssp CCCHHHH-HHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHHHHHHHTTCCT
T ss_pred hhhhhhH-HHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHH
Confidence 2111000 00111111111000 00113578899999999999887766
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChH----------------HHHHHH--hCCChHHHHhccCC
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ----------------LRDYVI--NMGVVPPLLSFIKP 467 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~----------------~~~~l~--~~g~l~~L~~ll~~ 467 (845)
..... -...++.++..+.+.++.++..+..++..+...... ....+. -...++.+...+.+
T Consensus 364 ~l~~~-~~~~~~~L~~~l~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~ 442 (1207)
T d1u6gc_ 364 MLPEF-YKTVSPALISRFKEREENVKADVFHAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKE 442 (1207)
T ss_dssp THHHH-HTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTC
T ss_pred HHHHH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcC
Confidence 55443 345789999999999999999999988877531100 011111 11233444444444
Q ss_pred CCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCCh--hHHHHH-H-HHhhhc--CchhhHHHHhhhhhh
Q psy12605 468 DIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDT--SVSIYL-W-LSIIEK--NPQISKILVSKMKVC 541 (845)
Q Consensus 468 ~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~--~v~~~~-~-l~~l~~--~~~~~~~~~~~~~~~ 541 (845)
.+...+..+.+++..++...+ ..-.......++.+...+..... .+...+ . +..+.. .+...... -..+.
T Consensus 443 -~~~~~r~~~~~~l~~l~~~~~-~~l~~~l~~~~~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~--~~~l~ 518 (1207)
T d1u6gc_ 443 -KSVKTRQCCFNMLTELVNVLP-GALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPH--VQALV 518 (1207)
T ss_dssp -SCHHHHHHHHHHHHHHHHHST-TTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHH--HTTTH
T ss_pred -CchhHHHHHHHHHHHHHHHcc-hHHHHhhHhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHH--HHhhh
Confidence 345677778888888876542 22234455666777666654332 333322 2 222221 11111111 12333
Q ss_pred HHHHhhhccCCCCccccccccccccccc-------CC-ChhhHHHHHhCCcccchHHhhc--CCChhHHHHHHHHHhhhc
Q psy12605 542 SRYLYYLSHNSGPMSCQKKQHSIYMCVS-------PG-TDEQTQVILNCDALSHFPALLT--HPKEKICKEAVWFLSNIT 611 (845)
Q Consensus 542 ~~L~~ll~~~~~~~~~~~~~l~~l~nl~-------~~-~~~~~~~l~~~~~l~~L~~ll~--~~~~~v~~~a~~~Lsnl~ 611 (845)
+.++..+.++...+. ..++.+++.+. .. .......+. ..++.+...+. +.+.+++..+..+++.+.
T Consensus 519 ~~~~~~~~~~~~~i~--~~al~~~~~l~~~l~~~~~~~~~~~~~~~~--~l~~~~~~~l~~~~~~~e~~~~al~~l~~l~ 594 (1207)
T d1u6gc_ 519 PPVVACVGDPFYKIT--SEALLVTQQLVKVIRPLDQPSSFDATPYIK--DLFTCTIKRLKAADIDQEVKERAISCMGQII 594 (1207)
T ss_dssp HHHHHHHTCSSHHHH--HHHHHHHHHHHHHHCCSSSCCCCCCHHHHH--HHHHHHHHHHSCSSSCHHHHHHHHHHHHHHH
T ss_pred hhHHHHHccccHHHH--HHHHHHHHHHHHHhhhhccchhhhhHHHHH--HHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence 444444443322211 11122211110 00 000000000 01222333333 235677887777777665
Q ss_pred cCCHHHHHHHHHCCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcc
Q psy12605 612 AGNQAQVQAVIDAGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFT 691 (845)
Q Consensus 612 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (845)
........ ..++.++..+.
T Consensus 595 ~~~~~~~~-----~~~~~~l~~l~-------------------------------------------------------- 613 (1207)
T d1u6gc_ 595 CNLGDNLG-----SDLPNTLQIFL-------------------------------------------------------- 613 (1207)
T ss_dssp HHTGGGCC-----THHHHHHHHHH--------------------------------------------------------
T ss_pred HHhhhhhH-----HHHHHHHHHHH--------------------------------------------------------
Confidence 32211000 00111111110
Q ss_pred hhhhhhhhhhccCCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccccHHHHHHHHHHHHHHHHhhHH
Q psy12605 692 LFAFISRFQLMFFPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCKDAQVIQVVLDGINNMLKMADA 771 (845)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~d~~~~~~al~~L~~l~~~~~~ 771 (845)
. .-.++..+..+..++..++...........+. ..++.+...+...+..++..++.+|..++.....
T Consensus 614 ----------~--~l~~~~~r~~a~~~l~~i~~~~~~~~~~~~l~-~~~~~l~~~l~~~~~~~r~~al~~L~~l~~~~~~ 680 (1207)
T d1u6gc_ 614 ----------E--RLKNEITRLTTVKALTLIAGSPLKIDLRPVLG-EGVPILASFLRKNQRALKLGTLSALDILIKNYSD 680 (1207)
T ss_dssp ----------H--HTTSSSHHHHHHHHHHHHTTCSSCCCCHHHHH-HHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHCCT
T ss_pred ----------H--HhcchhhHHHHHHHHHHHHHhccchhHHHHHH-HHHHHHHHhcccchHHHHHHHHHHHHHHHHhccc
Confidence 0 11234466677777777763322211122222 3567788888899999999999999999876433
Q ss_pred HH-HHHHHHHHHhChHHHHHhhhcCCCHHHHHHHHHHHHHhcCcc
Q psy12605 772 QV-ETLANMIEECGGLDKIEMLQNHENVEIYKLAYDIIERYFSEV 815 (845)
Q Consensus 772 ~~-~~~~~~~~e~g~~~~L~~l~~~~~~~v~~~a~~~l~~~~~~~ 815 (845)
.. ..... ..+..+..+..+++..++..+..++..+....
T Consensus 681 ~~~~~~~~-----~~l~~l~~ll~~~d~~v~~~~l~~l~~l~~~~ 720 (1207)
T d1u6gc_ 681 SLTAAMID-----AVLDELPPLISESDMHVSQMAISFLTTLAKVY 720 (1207)
T ss_dssp TCCHHHHH-----HHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSC
T ss_pred cchhHHHh-----hHHHhhccccccccHHHHHHHHHHHHHHHhhc
Confidence 21 11111 22334556777888889999999998876544
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.51 E-value=1.6e-11 Score=146.07 Aligned_cols=434 Identities=14% Similarity=0.152 Sum_probs=256.8
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhh
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQ 123 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~ 123 (845)
.+.+++...+.++|+..+..|-..|.++...+. .+.+..|.+.+... .++.+|..|+..|.+........
T Consensus 5 ~~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~ 75 (861)
T d2bpta1 5 EFAQLLENSILSPDQNIRLTSETQLKKLSNDNF---------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSV 75 (861)
T ss_dssp HHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccch
Confidence 344555345689999999999999988754321 13577888888543 35678889988888765432211
Q ss_pred HHH-----HH-------HcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHH
Q psy12605 124 TQE-----VV-------AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISF 190 (845)
Q Consensus 124 ~~~-----i~-------~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~ 190 (845)
... .. ....-..+++.+.++++.++..++.+++.++... +..+. ...++.|+..+.++.+...
T Consensus 76 ~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~w----peli~~L~~~~~s~~~~~~ 151 (861)
T d2bpta1 76 KTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGAW----PELMKIMVDNTGAEQPENV 151 (861)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTCC----HHHHHHHHHHTSTTSCHHH
T ss_pred hhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCch----HHHHHHHHHHhcCCCcHHH
Confidence 110 00 0123456777888999999999999999987421 11000 0136667777777767778
Q ss_pred HHHHHHHHHHhhcCCCCCC--ChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 191 LRNVTWVIVNLCRNKDPPP--SMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 191 ~~~a~~~L~~l~~~~~~~~--~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
+..+..+|..+|...++.. ........++.+.+.+.+.+... .++..++.++..+
T Consensus 152 ~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~-----------------------~v~~~a~~~l~~~ 208 (861)
T d2bpta1 152 KRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSK-----------------------AVRLAALNALADS 208 (861)
T ss_dssp HHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCH-----------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCH-----------------------HHHHHHHHHHHHH
Confidence 8889999999997654322 22334455555555554433321 1777788888776
Q ss_pred hcCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHH
Q psy12605 269 TDGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVW 347 (845)
Q Consensus 269 ~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~ 347 (845)
...-..... ......+++.+...+.+++++++..++.++..++.............-+...+.....+.++.++..++.
T Consensus 209 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~ 288 (861)
T d2bpta1 209 LIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVE 288 (861)
T ss_dssp GGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHH
Confidence 554332111 1112335667778888999999999999999997543322111111112222334446778899999988
Q ss_pred HHHHhhcCChHHHHHHHh----------------cCChHHHHHHhhhccc--ccCChhHHHHHHHHHHHHhcCChHhHHH
Q psy12605 348 FLSNITAGNQAQVQAVID----------------AGLLPKIIANLQKVGR--IVLRPNLQFEAAWALTNIASGTSAQTQE 409 (845)
Q Consensus 348 ~L~nl~~~~~~~~~~l~~----------------~~~i~~Lv~lL~~~~~--~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 409 (845)
.+..++............ ..+++.+...+..... ..++...+..+..++..++...++....
T Consensus 289 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 368 (861)
T d2bpta1 289 FWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILE 368 (861)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcchhhhh
Confidence 888775432222111111 1234555555543321 1134457777777777766432221111
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChH-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 410 VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 410 l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
-..+.+...+.+.+...+..+..+++.++..... ...... ...++.++..+.+. +..++..++|+++.++...
T Consensus 369 ----~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~l-~~~l~~l~~~l~d~-~~~vr~~a~~~l~~l~~~~ 442 (861)
T d2bpta1 369 ----PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ-SLQVKETTAWCIGRIADSV 442 (861)
T ss_dssp ----HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHHH
T ss_pred ----hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHHH-HHHHHHHHHHhcCc-chhhhhHHHHHHHHHHHHh
Confidence 1134455667788999999999999999875432 222221 23567777777654 4578889999999988754
Q ss_pred CC-CCChhHHHhHHHHHHHhhcCCChhHHHHHH
Q psy12605 489 DP-PPSMSTIIELLPALNILIHHHDTSVSIYLW 520 (845)
Q Consensus 489 ~~-~~~~~~~~~~l~~l~~ll~~~d~~v~~~~~ 520 (845)
.+ ..........++.+...+..........+|
T Consensus 443 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~ 475 (861)
T d2bpta1 443 AESIDPQQHLPGVVQACLIGLQDHPKVATNCSW 475 (861)
T ss_dssp GGGSCTTTTHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred chhhhhHHhhhhhhHHHHhccccChHHHHHHHH
Confidence 22 122233445555555555443333333444
|
| >d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Karyopherin beta2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.51 E-value=1.4e-15 Score=183.22 Aligned_cols=410 Identities=15% Similarity=0.122 Sum_probs=254.7
Q ss_pred cCCChHHHHHHHHHHHHHHcCC----CCccHHHHHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHc
Q psy12605 55 RKDNPELQLLAVQSARKLLSSD----KNPPIEALIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAA 130 (845)
Q Consensus 55 ~~~~~~~~~~a~~~l~~ll~~~----~~~~~~~i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~ 130 (845)
.+.+...|..|...|++.+... ....... +-+.+++.|. +.++.+|..++.+++.++....-.. =.
T Consensus 56 ~~~~~~~R~~A~i~Lkn~i~~~w~~~~~~~~~~-----Ik~~ll~~l~-~~~~~vr~~~~~~i~~i~~~~~~~~----Wp 125 (888)
T d1qbkb_ 56 KSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDF-----IKSECLNNIG-DSSPLIRATVGILITTIASKGELQN----WP 125 (888)
T ss_dssp SCSTTTHHHHTTGGGGGTHHHHTTCSTTTCCHH-----HHHHHTTGGG-CCCSSTTTTTTTTTHHHHTTTSSCS----ST
T ss_pred CCCCHHHHHHHHHHHHHHHHHhhccCCHHHHHH-----HHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHhCccc----hH
Confidence 4445666777766666544311 1111222 2455677774 5678899999999999886421100 02
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHH-HHh---cCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDY-VIN---MGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKD 206 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~-i~~---~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~ 206 (845)
+.+|.|++++.++++..++.|+.+|+.|+.+.....+. ... ...++.++..++++.. .++..|+.++..+.....
T Consensus 126 ell~~L~~~l~s~~~~~~~~al~~L~~i~e~~~~~~~~~~~~~~~~~ll~~ll~~~~~~~~-~vr~~al~~l~~~~~~~~ 204 (888)
T d1qbkb_ 126 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSP-KIRSHAVACVNQFIISRT 204 (888)
T ss_dssp TTSTTTTTSSTGGGSSCSSSSSTTTHHHHGGGHHHHHTC---CCSTTTTHHHHTGGGSSSS-CSSSTTTHHHHGGGGCCC
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhHHHhhHHHHHHHHHHHHHHHHHHhhCCCH-HHHHHHHHHHHHHHHhhh
Confidence 47888888888888888999999999999654322111 111 1267788888877644 678888888888776553
Q ss_pred CCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchh
Q psy12605 207 PPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVP 286 (845)
Q Consensus 207 ~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~ 286 (845)
..........++.+.....+++++ ++..++.++..+.....+..... -.++++
T Consensus 205 -~~~~~~~~~~l~~l~~~~~~~~~~-------------------------vr~~~~~~l~~l~~~~~~~l~~~-l~~i~~ 257 (888)
T d1qbkb_ 205 -QALMLHIDSFTENLFALAGDEEPE-------------------------VRKNVCRALVMLLEVRMDRLLPH-MHNIVE 257 (888)
T ss_dssp -STTCSHHHHCSHHHHTTSSCCCSS-------------------------STTHHHHTTTTTSCSCTTTTTTT-TTTTTT
T ss_pred -HHHHHHHHHHHHHHHHhcCCcchH-------------------------HHHHHHHHHHHHHHHhHHHHHHH-HHHHHH
Confidence 222334567788888888888888 77888888888876555432221 135677
Q ss_pred hHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhc--CCccchhhHhhcC----------------------------
Q psy12605 287 SLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN--CDALSHFPALLTH---------------------------- 336 (845)
Q Consensus 287 ~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~--~~~l~~L~~lL~~---------------------------- 336 (845)
.++..+.+++++++..|+..+..++.... ....+.. ...++.+...+..
T Consensus 258 ~~l~~~~~~~e~v~~~a~ef~~~~~e~~~-~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 336 (888)
T d1qbkb_ 258 YMLQRTQDQDENVALEACEFWLTLAEQPI-CKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEEDETIPDSEQDIRPR 336 (888)
T ss_dssp TTTTTTTSSCHHHHHHHHHHHCCCCSGGG-GTTTTTTSTTTTTTTTTTSSCCSSTTHHHHTTTSSCCTTSCCCGGGCCCC
T ss_pred HHHHhcCCCcHHHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHHhhcchHHHHHHhhhhhhhhhhhhhHHHHHHH
Confidence 77777888899999999998887763211 1010000 0011111111000
Q ss_pred --------------------------------CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccC
Q psy12605 337 --------------------------------PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVL 384 (845)
Q Consensus 337 --------------------------------~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~ 384 (845)
....+|+.+..+|..++.... ..+++.++..+...-.+ .
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~a~~~L~~l~~~~~--------~~il~~~l~~l~~~l~s-~ 407 (888)
T d1qbkb_ 337 FHRSRTVAQQHDEDGIEEEDDDDDEIDDDDTISDWNLRKCSAAALDVLANVYR--------DELLPHILPLLKELLFH-H 407 (888)
T ss_dssp CCCCCCCCCCCTTC-----CHHHHTTCCCSTTSCCSSHHHHHHHSTTTTTTCC--------SSSHHHHHHHHHHTTTS-S
T ss_pred HHHHHHHHHHhhhhhhhhcccchhhhhhhhhhhhhhHHHHHHHHHhhHhhhhH--------HHHHHHHHHHHHHhhcc-c
Confidence 001246666666655543222 23555555555432211 4
Q ss_pred ChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCCh-HHHHHHHhCCChHHHHh
Q psy12605 385 RPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGP-QLRDYVINMGVVPPLLS 463 (845)
Q Consensus 385 ~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~-~~~~~l~~~g~l~~L~~ 463 (845)
++..|..|+.+++.++.+..+...... ...++.++..+.++++.||..++|+|+.++.... ...+. .-...++.++.
T Consensus 408 ~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~-~~~~~l~~ll~ 485 (888)
T d1qbkb_ 408 EWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT-YLKPLMTELLK 485 (888)
T ss_dssp SHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH-HTTTHHHHHHH
T ss_pred hhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh-hhhhhHHHHHH
Confidence 789999999999999987755433222 1357889999999999999999999999875211 11111 12345666776
Q ss_pred ccCCCCChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHH
Q psy12605 464 FIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVS 516 (845)
Q Consensus 464 ll~~~~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~ 516 (845)
.+.+.. ..++..+++++.+++....+ .-......+++.+...+...+....
T Consensus 486 ~l~d~~-~~V~~~a~~al~~l~~~~~~-~l~p~~~~il~~l~~~l~~~~~~~~ 536 (888)
T d1qbkb_ 486 RILDSN-KRVQEAACSAFATLEEEACT-ELVPYLAYILDTLVFAFSKYQHKNL 536 (888)
T ss_dssp HHSSSC-HHHHHHHHHHHHHHHHHHTT-SSGGGHHHHHHHHHHHTTTCCHHHH
T ss_pred HhcCCC-HHHHHHHHHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHhhhhHHHH
Confidence 665543 57889999999999875532 2234567778888877776555443
|
| >d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.41 E-value=2.3e-11 Score=144.65 Aligned_cols=614 Identities=13% Similarity=0.106 Sum_probs=328.9
Q ss_pred HHHHHHHcC--CChHHHHHHHHHHHHHHcCCCCccHHH-----------HHhcCCHHHHHHhhccCCChhHHHHHHHHHH
Q psy12605 48 MLVVEAARK--DNPELQLLAVQSARKLLSSDKNPPIEA-----------LIHSGILPVLVECLERSDRPNLQFEAAWALT 114 (845)
Q Consensus 48 ~lv~~~l~~--~~~~~~~~a~~~l~~ll~~~~~~~~~~-----------i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~ 114 (845)
.+. +.+.+ .++..|..|+..|++.+.......... -....+-..+++.+ .++++.+|..++.++.
T Consensus 43 ~l~-~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l-~~~~~~vr~~~a~~i~ 120 (861)
T d2bpta1 43 LSS-QVLIDENTKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTAL-VSIEPRIANAAAQLIA 120 (861)
T ss_dssp HHH-HHHTCTTSCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-TCSSHHHHHHHHHHHH
T ss_pred HHH-HHHHcCCCCHHHHHHHHHHHHHHhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH
Confidence 444 55544 356788889999988765432110000 01122346677777 4667899999999999
Q ss_pred HHhcCC-hhhHHHHHHcCChHHHHHhhCCCC-hhHHHHHHHHHHHhcCCChhhHHHHHhc--CChhhHHhhh-cCCCCHH
Q psy12605 115 NIASGT-SAQTQEVVAAGAVPLFLRLLMSPH-SNVCEQAVWALGNIIGDGPQLRDYVINM--GVVPPLLSFI-KPDIPIS 189 (845)
Q Consensus 115 ~la~~~-~~~~~~i~~~g~i~~L~~lL~s~~-~~v~~~a~~~L~nla~~~~~~r~~i~~~--g~i~~Lv~ll-~~~~~~~ 189 (845)
.++... +++.- .+.++.|+..+.+++ ..++..|+.+|+.++.......+.+... ..+..++..+ ....+..
T Consensus 121 ~i~~~~~p~~~w----peli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~ 196 (861)
T d2bpta1 121 AIADIELPHGAW----PELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKA 196 (861)
T ss_dssp HHHHHHGGGTCC----HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHH
T ss_pred HHHHHhCCcCch----HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHH
Confidence 987531 11000 125667777777654 5678889999999985432211111100 1123333333 2344568
Q ss_pred HHHHHHHHHHHhhcCCCCC-CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHh
Q psy12605 190 FLRNVTWVIVNLCRNKDPP-PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYL 268 (845)
Q Consensus 190 ~~~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l 268 (845)
++..++.++.++...-... .........++.+...+.+++++ ++..++.++..+
T Consensus 197 v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------~~~~~~~~l~~i 251 (861)
T d2bpta1 197 VRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIE-------------------------VQAAAFGCLCKI 251 (861)
T ss_dssp HHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHH-------------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHH-------------------------HHHHHHHHHHHH
Confidence 8999999999887654211 11223445677777888888887 888888888887
Q ss_pred hcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhc----------------CCccchhhH
Q psy12605 269 TDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILN----------------CDALSHFPA 332 (845)
Q Consensus 269 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~----------------~~~l~~L~~ 332 (845)
.....+........-+...+.....+.++.++..++..+..++............ ...++.+..
T Consensus 252 ~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~ 331 (861)
T d2bpta1 252 MSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLN 331 (861)
T ss_dssp HHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 7654443333223333334455557788999999999998886432211111100 013344444
Q ss_pred hhcCC-------chhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH
Q psy12605 333 LLTHP-------KEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA 405 (845)
Q Consensus 333 lL~~~-------~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~ 405 (845)
.+... +...+..+..++..++.. ....+++.+...+...... .++..+..+..+++.++.+...
T Consensus 332 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~l~~i~~~~~~ 402 (861)
T d2bpta1 332 LLTRQNEDPEDDDWNVSMSAGACLQLFAQN--------CGNHILEPVLEFVEQNITA-DNWRNREAAVMAFGSIMDGPDK 402 (861)
T ss_dssp HTTCCCCC-CCCCCHHHHHHHHHHHHHHHH--------HGGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCH
T ss_pred HHHHhhccccchhHHHHHHHHHHHHHHHhh--------cchhhhhhhcchhhhhhhh-HHHHHHHHHHHHHHHHHhhcch
Confidence 44321 235666666677665332 2233455555444332111 4788899999999999876554
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccC--CCCChhHHHHHHHHHHH
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIK--PDIPISFLRNVTWVIVN 483 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~--~~~~~~~~~~~~~~l~n 483 (845)
....-.-...++.++..+.++++.++..++++++.++...+. .+.....++.++..+. ...+......++|++..
T Consensus 403 ~~~~~~l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~---~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~ 479 (861)
T d2bpta1 403 VQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAE---SIDPQQHLPGVVQACLIGLQDHPKVATNCSWTIIN 479 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGG---GSCTTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhch---hhhhHHhhhhhhHHHHhccccChHHHHHHHHHHHH
Confidence 333333344688899999999999999999999998753211 1112233444443332 12344677788888887
Q ss_pred hhcCCC---CCCChhHHHhHHHHHHHhhcCC--ChhHHHHHH--HHhhh-cCchhhHHHH--hhhhhhHHHHhhhccCCC
Q psy12605 484 LCRNKD---PPPSMSTIIELLPALNILIHHH--DTSVSIYLW--LSIIE-KNPQISKILV--SKMKVCSRYLYYLSHNSG 553 (845)
Q Consensus 484 L~~~~~---~~~~~~~~~~~l~~l~~ll~~~--d~~v~~~~~--l~~l~-~~~~~~~~~~--~~~~~~~~L~~ll~~~~~ 553 (845)
++.... +..........+..+....... +..+...++ +..+. ..++...... .-......+...+.....
T Consensus 480 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~al~~~i~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~ 559 (861)
T d2bpta1 480 LVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDEN 559 (861)
T ss_dssp HHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHHHHHHHHHHHHHHHTTSCGG
T ss_pred HHHHhhhcccchhhHHHhhHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 765432 1222344445556555555433 333443322 22221 1121111110 001111122222211111
Q ss_pred Cccc---------ccccccccccccCCChhhHHHHHhCCcccchHHhhcC-CChhHHHHHHHHHhhhccCCHHHHHHHHH
Q psy12605 554 PMSC---------QKKQHSIYMCVSPGTDEQTQVILNCDALSHFPALLTH-PKEKICKEAVWFLSNITAGNQAQVQAVID 623 (845)
Q Consensus 554 ~~~~---------~~~~l~~l~nl~~~~~~~~~~l~~~~~l~~L~~ll~~-~~~~v~~~a~~~Lsnl~~~~~~~~~~~~~ 623 (845)
.... ...+..++..+.......... .-...++.+...+.. ++..++..++.+++.++.........+++
T Consensus 560 ~~~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~-~~~~l~~~l~~~l~~~~~~~v~~~~l~~l~~l~~~~~~~~~~~l~ 638 (861)
T d2bpta1 560 QLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEP-VADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLE 638 (861)
T ss_dssp GCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGG-GHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred hhhhhHHhHHHHHHHHHHHHHHHHHhcchhhHHH-HHHHHHHHHhhhcccCCchhHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 1000 000001111110000000000 000123344444544 45678888999998887543322222221
Q ss_pred CCChHHHHHHhhhhhhhhhhhcccCCchhHHHHHHHHHHHHHhhHhHhhhhccccCccchhccccCcchhhhhhhhhhcc
Q psy12605 624 AGLLPKIIANLQKRSCKILNKYLDNNNMVLHNVLLQMSVFLQNVEERMIYSSFQKTSPLRVAATGGFTLFAFISRFQLMF 703 (845)
Q Consensus 624 ~~~l~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 703 (845)
.++|.+...+
T Consensus 639 -~i~p~l~~~l--------------------------------------------------------------------- 648 (861)
T d2bpta1 639 -TFSPYLLKAL--------------------------------------------------------------------- 648 (861)
T ss_dssp -HHHHHHHHHH---------------------------------------------------------------------
T ss_pred -HHhhHHHHHh---------------------------------------------------------------------
Confidence 1333343333
Q ss_pred CCCCCccchhHHHHHHHhhcccCCHHHHHHHHHcCCchHHhhhhccc--cHHHHHHHHHHHHHHHHhhHHHHHHHHH
Q psy12605 704 FPQGEFQTQKEAAWAISNLTISGNRDQVAKLVQEGVIPPFCDLLSCK--DAQVIQVVLDGINNMLKMADAQVETLAN 778 (845)
Q Consensus 704 ~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~l~~~~~i~~L~~~L~~~--d~~~~~~al~~L~~l~~~~~~~~~~~~~ 778 (845)
.+.++.++..|+.+++.++.. ..+.....+. ..+..|+..+... +..++..++.+|..++......+.+|..
T Consensus 649 -~~~~~~v~~~a~~~l~~i~~~-~~~~~~~~~~-~i~~~L~~~l~~~~~~~~~k~~~~~~l~~i~~~~~~~~~~~l~ 722 (861)
T d2bpta1 649 -NQVDSPVSITAVGFIADISNS-LEEDFRRYSD-AMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLN 722 (861)
T ss_dssp -HCTTSHHHHHHHHHHHHHHHH-TGGGGHHHHH-HHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHH
T ss_pred -CCCCHHHHHHHHHHHHHHHHH-hHHHhHhhHH-HHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778999999999998733 2222222222 4677788888763 5678899999999998766555444433
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.35 E-value=1.6e-10 Score=137.78 Aligned_cols=381 Identities=14% Similarity=0.136 Sum_probs=235.4
Q ss_pred ChHHHHHHHHHHHHHHcCCCCccHHH----------HHhcCCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHH
Q psy12605 58 NPELQLLAVQSARKLLSSDKNPPIEA----------LIHSGILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEV 127 (845)
Q Consensus 58 ~~~~~~~a~~~l~~ll~~~~~~~~~~----------i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i 127 (845)
+...|..|+..|++.+.......... -....+-..+++.|. +++ .++..++.++..++.. +.-
T Consensus 50 ~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~-~~~-~~~~~~a~~i~~i~~~--~~p--- 122 (876)
T d1qgra_ 50 SQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLG-TET-YRPSSASQCVAGIACA--EIP--- 122 (876)
T ss_dssp CHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-TCC-SSSCHHHHHHHHHHHH--HGG---
T ss_pred CHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhc-CCc-HHHHHHHHHHHHHHHH--HCC---
Confidence 46789999999999886542211111 113346778888884 444 3556678888888742 110
Q ss_pred HH--cCChHHHHHhhCCCC--hhHHHHHHHHHHHhcCCChhhHHHHHh--cCChhhHHhhhcCC-CCHHHHHHHHHHHHH
Q psy12605 128 VA--AGAVPLFLRLLMSPH--SNVCEQAVWALGNIIGDGPQLRDYVIN--MGVVPPLLSFIKPD-IPISFLRNVTWVIVN 200 (845)
Q Consensus 128 ~~--~g~i~~L~~lL~s~~--~~v~~~a~~~L~nla~~~~~~r~~i~~--~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~ 200 (845)
.+ .+.+|.|++.+.+++ ..++..++.+|+.++.+-. .+.+.. ...++.++..+.+. ....++..++.++.+
T Consensus 123 ~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~--~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~ 200 (876)
T d1qgra_ 123 VNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDID--PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLN 200 (876)
T ss_dssp GTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC--HHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHH
Confidence 01 257888888886654 6788899999999975321 111111 13566777777543 356788889888888
Q ss_pred hhcCCCCCCC-hhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHH
Q psy12605 201 LCRNKDPPPS-MSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMV 279 (845)
Q Consensus 201 l~~~~~~~~~-~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~ 279 (845)
.......... .......++.+...+.+++++ ++..++.++..+.....+.....
T Consensus 201 ~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~-------------------------v~~~~~~~l~~l~~~~~~~~~~~ 255 (876)
T d1qgra_ 201 SLEFTKANFDKESERHFIMQVVCEATQCPDTR-------------------------VRVAALQNLVKIMSLYYQYMETY 255 (876)
T ss_dssp HGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHHHHSGGGCHHH
T ss_pred HHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHH-------------------------HHHHHHHHHHHHHHHhHHHHHHH
Confidence 7654421111 122234566666777777777 88889999988877655554444
Q ss_pred HhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHH----HH----------------hcCCccchhhHhhcC---
Q psy12605 280 IDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQ----VI----------------LNCDALSHFPALLTH--- 336 (845)
Q Consensus 280 ~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~----~i----------------~~~~~l~~L~~lL~~--- 336 (845)
....+.+.+...+.+....++..++..+..++........ .. .....++.+...+..
T Consensus 256 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 335 (876)
T d1qgra_ 256 MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDE 335 (876)
T ss_dssp HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhccc
Confidence 4555666677777788888999999888888643211100 00 001123333333322
Q ss_pred ----CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHH
Q psy12605 337 ----PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVA 412 (845)
Q Consensus 337 ----~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~ 412 (845)
.+..++..|..++..++.. ....+++.++..+...-.. .++..+..++.+++.+..+.......-..
T Consensus 336 ~~~~~~~~~~~~a~~~l~~l~~~--------~~~~~~~~~~~~i~~~l~~-~~~~~r~~~~~~l~~~~~~~~~~~~~~~~ 406 (876)
T d1qgra_ 336 NDDDDDWNPCKAAGVCLMLLATC--------CEDDIVPHVLPFIKEHIKN-PDWRYRDAAVMAFGCILEGPEPSQLKPLV 406 (876)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHH--------HGGGGHHHHHHHHHHHTTC-SSHHHHHHHHHHHHHTSSSSCHHHHHHHH
T ss_pred ccccccchHHHHHHHHHHHHHHH--------hhhhhhhhhHHHHHHhhcc-chHHHHHHHHHHHHhhhhhhhHHHHHHHH
Confidence 1234677777777766432 2234455555555443211 47888899999999988765443333334
Q ss_pred cCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHHHHHHhCCChH----HHHhccCCCCChhHHHHHHHHHHHhhc
Q psy12605 413 AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVP----PLLSFIKPDIPISFLRNVTWVIVNLCR 486 (845)
Q Consensus 413 ~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~----~L~~ll~~~~~~~~~~~~~~~l~nL~~ 486 (845)
...++.+...+.++++.|+..++++++.++...+.. ......++ .+...+. ++..+...++|++.+++.
T Consensus 407 ~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~---~~~~~~~~~~~~~l~~~l~--~~~~v~~~~~~~l~~l~~ 479 (876)
T d1qgra_ 407 IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA---AINDVYLAPLLQCLIEGLS--AEPRVASNVCWAFSSLAE 479 (876)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGG---TSSTTTHHHHHHHHHHHTT--SCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcchh---hhhHHHhhhHHHHHHHHhc--CCHHHHHHHHHHHHHHHH
Confidence 457888999999999999999999999998643221 11122233 3344343 345778889999988865
|
| >d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: HEAT repeat domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=3.7e-11 Score=149.09 Aligned_cols=423 Identities=13% Similarity=0.133 Sum_probs=235.0
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhh---------------------------
Q psy12605 45 NLDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECL--------------------------- 97 (845)
Q Consensus 45 ~i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL--------------------------- 97 (845)
-++.++ ..|++.++++|..|+.+|..+...-++..... +++.|+..+
T Consensus 46 i~~~ll-~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~~-----l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~ 119 (1207)
T d1u6gc_ 46 VVKMIL-KLLEDKNGEVQNLAVKCLGPLVSKVKEYQVET-----IVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS 119 (1207)
T ss_dssp HHHHHH-HHTTCSSHHHHHHHHHHHHHHHTTSCHHHHHH-----HHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred HHHHHH-HHhCCCCHHHHHHHHHHHHHHHHhCcHhhHHH-----HHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccc
Confidence 356677 78999999999999999988766543222211 233333333
Q ss_pred --------------------ccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHH
Q psy12605 98 --------------------ERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGN 157 (845)
Q Consensus 98 --------------------~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~n 157 (845)
....++.++..|+.+|..+........... ....++.|+..|++++..+|..|+.+|+.
T Consensus 120 ~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~~~~~~vR~~A~~~l~~ 198 (1207)
T d1u6gc_ 120 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLTSPRLAVRKRTIIALGH 198 (1207)
T ss_dssp -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 222334455555555555443111100000 11256777778889999999999999999
Q ss_pred hcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHH
Q psy12605 158 IIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLW 237 (845)
Q Consensus 158 la~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~ 237 (845)
++...++ ... ...++.++..+..+.....++.++.++..+++.... .........+|.+...+.+++++
T Consensus 199 l~~~~~~---~~~-~~~~~~ll~~l~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~l~~i~~~l~~~l~~~~~~------ 267 (1207)
T d1u6gc_ 199 LVMSCGN---IVF-VDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQAGH-RIGEYLEKIIPLVVKFCNVDDDE------ 267 (1207)
T ss_dssp HTTTC-------C-TTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHSSG-GGTTSCTTHHHHHHHHHSSCCTT------
T ss_pred HHHHCCH---HHH-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHcch-hhHHHHHHHHHHHHHHhcCccHH------
Confidence 9865432 111 124566666664443445667788888888875421 11223457889999999888888
Q ss_pred HHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhh
Q psy12605 238 LSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQ 317 (845)
Q Consensus 238 ~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~ 317 (845)
++..++.++..+....++..... ...+++.+..++.........................
T Consensus 268 -------------------~r~~al~~l~~l~~~~~~~~~~~-~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~ 327 (1207)
T d1u6gc_ 268 -------------------LREYCIQAFESFVRRCPKEVYPH-VSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDD 327 (1207)
T ss_dssp -------------------THHHHHHHHHHHHHCTTCCCHHH-HHHHHHHHTTCCCCC----------------------
T ss_pred -------------------HHHHHHHHHHHHHHhChhhhhhh-HHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccch
Confidence 77778777777665443322222 2234455555554322111111111111111110000
Q ss_pred HHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHH
Q psy12605 318 TQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALT 397 (845)
Q Consensus 318 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~ 397 (845)
.....+.......+....+|..++.+|..+....++...... ..+++.++..+.+ .++.++..+..++.
T Consensus 328 -----~~~~~~~~~~~~~d~s~~vR~~a~~~L~~l~~~~~~~l~~~~-~~~~~~L~~~l~d-----~~~~vr~~~~~~l~ 396 (1207)
T d1u6gc_ 328 -----DDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFY-KTVSPALISRFKE-----REENVKADVFHAYL 396 (1207)
T ss_dssp -------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHH-TTTHHHHHSTTSC-----SSSHHHHHHHHHHH
T ss_pred -----hhhhHHHHHhhhhhhhHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHhcC-----CchHHHHHHHHHHH
Confidence 011222223333455678999999999998777665444333 4578888888866 37889999988888
Q ss_pred HHhcCChH----------------hHHHHH--HcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChH-HHHHHHhCCCh
Q psy12605 398 NIASGTSA----------------QTQEVV--AAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQ-LRDYVINMGVV 458 (845)
Q Consensus 398 ~l~~~~~~----------------~~~~l~--~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~-~~~~l~~~g~l 458 (845)
.+...... ....+. -...++.+.+.+.+.+..++..+..++..+....+. ....+ ...+
T Consensus 397 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~l~~~l~~~~~~~r~~~~~~l~~l~~~~~~~l~~~l--~~~~ 474 (1207)
T d1u6gc_ 397 SLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHI--PVLV 474 (1207)
T ss_dssp HHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGH--HHHH
T ss_pred HHHHhccchhhhhhchHHHHhhcchHHHHHHHhHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHcchHHHHhh--HhhH
Confidence 77532110 011111 123456677888899999999999999988753221 11111 0123
Q ss_pred HHHHhccCCC-CChhHHHHHHHHHHHhhcCCCCCCChhHHHhHHHHHHHhhcCCChhHHHH
Q psy12605 459 PPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIY 518 (845)
Q Consensus 459 ~~L~~ll~~~-~~~~~~~~~~~~l~nL~~~~~~~~~~~~~~~~l~~l~~ll~~~d~~v~~~ 518 (845)
+.+...+... ....++..+.+++..+.....+..-........+.+...+.+....+...
T Consensus 475 ~~i~~~l~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~ 535 (1207)
T d1u6gc_ 475 PGIIFSLNDKSSSSNLKIDALSCLYVILCNHSPQVFHPHVQALVPPVVACVGDPFYKITSE 535 (1207)
T ss_dssp HHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSCGGGGHHHHTTTHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHhcccchhHHHHHHHHHHHHHHHhccHHHHHHHHHhhhhhHHHHHccccHHHHHH
Confidence 4555555543 33456667777888877765443334455667777777777666665543
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=99.09 E-value=3.8e-09 Score=106.80 Aligned_cols=255 Identities=17% Similarity=0.142 Sum_probs=188.9
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHH
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRD 167 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~ 167 (845)
...+.|+++| .+++|.+|..|+.+|..+.. + .++|.|+++++++++.++..|+.+|+.+..... ...
T Consensus 19 ~~~~~L~~~L-~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~~-~~~ 85 (276)
T d1oyza_ 19 LNDDELFRLL-DDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDKNYIRRDIGAFILGQIKICKK-CED 85 (276)
T ss_dssp SCHHHHHHHT-TCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTT-THH
T ss_pred CCHHHHHHHh-cCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccccc-ccc
Confidence 4577889999 48899999999999998853 2 368999999999999999999999999974432 222
Q ss_pred HHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhh
Q psy12605 168 YVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQI 247 (845)
Q Consensus 168 ~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~ 247 (845)
.+ ++.+...+-++.+..++..++.+|.+++.... ......++.+...+.+.++.
T Consensus 86 ~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~-----~~~~~~~~~l~~~~~d~~~~---------------- 139 (276)
T d1oyza_ 86 NV-----FNILNNMALNDKSACVRATAIESTAQRCKKNP-----IYSPKIVEQSQITAFDKSTN---------------- 139 (276)
T ss_dssp HH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG-----GGHHHHHHHHHHHTTCSCHH----------------
T ss_pred ch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccc-----hhhHHHHHHHHHHhcCcchH----------------
Confidence 21 33444444344466899999999999987542 22345777787778777777
Q ss_pred HHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCcc
Q psy12605 248 SKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDAL 327 (845)
Q Consensus 248 ~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l 327 (845)
++..++.++..+. +...++.+..++...+..++..+..+++.+...... ..
T Consensus 140 ---------vr~~a~~~l~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~---------~~ 190 (276)
T d1oyza_ 140 ---------VRRATAFAISVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSD---------IR 190 (276)
T ss_dssp ---------HHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHH---------HH
T ss_pred ---------HHHHHHHHHhhcc-----------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccc---------cc
Confidence 7777777665432 345667888888888999999999888887655332 34
Q ss_pred chhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhH
Q psy12605 328 SHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQT 407 (845)
Q Consensus 328 ~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~ 407 (845)
+.+...+.+.+..++..+..++..+. ....++.|+..+.+ +.++..++++|+.+..
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~al~~~~-----------~~~~~~~L~~~l~d-------~~vr~~a~~aL~~ig~------ 246 (276)
T d1oyza_ 191 DCFVEMLQDKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKK-------NTVYDDIIEAAGELGD------ 246 (276)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTS-------SSCCHHHHHHHHHHCC------
T ss_pred hhhhhhhhhhhhhhhhhhccccchhh-----------hhhhHHHHHHHhCC-------hHHHHHHHHHHHHcCC------
Confidence 45677788889999999999988762 23467888888754 4688999999998842
Q ss_pred HHHHHcCChHHHHHhhCC-CCHHHHHHHHHHHH
Q psy12605 408 QEVVAAGAVPLFLRLLMS-PHSNVCEQAVWALG 439 (845)
Q Consensus 408 ~~l~~~g~i~~Lv~lL~~-~~~~v~~~a~~~L~ 439 (845)
.+.++.|..++.+ ++.+++..|+.+|.
T Consensus 247 -----~~~~~~L~~~l~~~~d~~vr~~A~~~L~ 274 (276)
T d1oyza_ 247 -----KTLLPVLDTMLYKFDDNEIITSAIDKLK 274 (276)
T ss_dssp -----GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence 2478889888876 46789999888774
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=6e-09 Score=113.41 Aligned_cols=399 Identities=13% Similarity=0.123 Sum_probs=245.0
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC-CChhHHHHHHHHHHHHhcCChhhH
Q psy12605 46 LDMLVVEAARKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS-DRPNLQFEAAWALTNIASGTSAQT 124 (845)
Q Consensus 46 i~~lv~~~l~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~i~~~a~~~L~~la~~~~~~~ 124 (845)
+.+++ +.+.++|.+.+.+|-..|..+...+. .+.+..|..++..+ .+..+|..|+..|.+.-.......
T Consensus 2 l~~il-~~~~s~d~~~r~~A~~~L~~~~~~~~---------~~~~~~l~~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~ 71 (458)
T d1ibrb_ 2 LITIL-EKTVSPDRLELEAAQKFLERAAVENL---------PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDI 71 (458)
T ss_dssp HHHHH-HHTTCSCHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHH
T ss_pred HHHHH-HHHhCcCHHHHHHHHHHHHHHHhcCc---------hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccCchh
Confidence 34566 77789999999999999998876421 12477788888543 345788888888887665432221
Q ss_pred H-HH----------HHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcC-CCCHHHHH
Q psy12605 125 Q-EV----------VAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKP-DIPISFLR 192 (845)
Q Consensus 125 ~-~i----------~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~-~~~~~~~~ 192 (845)
. .. ......+.+++.+.++++. +..++.+++.++.... .. -.-.+.++.++..+.+ ..+...+.
T Consensus 72 ~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i~~~~~--~~-~~~~~~~~~l~~~l~~~~~~~~~~~ 147 (458)
T d1ibrb_ 72 KAQYQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGIACAEI--PV-NQWPELIPQLVANVTNPNSTEHMKE 147 (458)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHHHHHHG--GG-TCCTTHHHHHHHHHHCTTCCHHHHH
T ss_pred hhHHhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHHHHHhC--Cc-ccCcchhHHHHHHHHhhcchHHHHH
Confidence 1 11 1123455677777776554 3344555555542110 00 0011356677776654 33556778
Q ss_pred HHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCC
Q psy12605 193 NVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGG 272 (845)
Q Consensus 193 ~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~ 272 (845)
.+..++..++...............++.+...+.+.++.. +++..++.++..+....
T Consensus 148 ~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~-----------------------~v~~~a~~~l~~~~~~~ 204 (458)
T d1ibrb_ 148 STLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSN-----------------------NVKLAATNALLNSLEFT 204 (458)
T ss_dssp HHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCH-----------------------HHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCH-----------------------HHHHHHHHHHHHHHHhh
Confidence 8899999888766444444456678888888887654431 17777888888776543
Q ss_pred hhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHH
Q psy12605 273 NDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSN 351 (845)
Q Consensus 273 ~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~n 351 (845)
..... ........+.+..++.+++++++..++.+|..++..........+.....+.+...+.+.++.++..++..+..
T Consensus 205 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~ 284 (458)
T d1ibrb_ 205 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSN 284 (458)
T ss_dssp HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 32211 11122355667777888999999999999999975443321111122233344555677888999999988888
Q ss_pred hhcCChHHHHHH--------------------HhcCChHHHHHHhhhccc--ccCChhHHHHHHHHHHHHhcCChHhHHH
Q psy12605 352 ITAGNQAQVQAV--------------------IDAGLLPKIIANLQKVGR--IVLRPNLQFEAAWALTNIASGTSAQTQE 409 (845)
Q Consensus 352 l~~~~~~~~~~l--------------------~~~~~i~~Lv~lL~~~~~--~~~~~~v~~~a~~~L~~l~~~~~~~~~~ 409 (845)
++.......... .-..+++.+.+.+.+... .+.+..++..+..++..++...++...
T Consensus 285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~- 363 (458)
T d1ibrb_ 285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV- 363 (458)
T ss_dssp HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTHH-
T ss_pred HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhhh-
Confidence 754322211110 011123344444332211 113456888888888888753332211
Q ss_pred HHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hH-HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcC
Q psy12605 410 VVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQ-LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRN 487 (845)
Q Consensus 410 l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~-~~-~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~ 487 (845)
...++.+.+.++++++.+|..|+.+|+.++... +. .+. .-...++.++..+++. +..++..++|+++.++..
T Consensus 364 ---~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~--~l~~i~~~l~~~l~d~-~~~VR~~a~~~l~~i~~~ 437 (458)
T d1ibrb_ 364 ---PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP--LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICEL 437 (458)
T ss_dssp ---HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT--TTTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHHHH
T ss_pred ---hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH--HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHH
Confidence 124567888889999999999999999998532 11 111 1124567778888754 457899999999999875
Q ss_pred C
Q psy12605 488 K 488 (845)
Q Consensus 488 ~ 488 (845)
.
T Consensus 438 ~ 438 (458)
T d1ibrb_ 438 L 438 (458)
T ss_dssp G
T ss_pred h
Confidence 4
|
| >d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=4.3e-08 Score=116.15 Aligned_cols=402 Identities=14% Similarity=0.142 Sum_probs=238.7
Q ss_pred cCCHHHHHHhhccCC-ChhHHHHHHHHHHHHhcCChhhH-HH----------HHHcCChHHHHHhhCCCChhHHHHHHHH
Q psy12605 87 SGILPVLVECLERSD-RPNLQFEAAWALTNIASGTSAQT-QE----------VVAAGAVPLFLRLLMSPHSNVCEQAVWA 154 (845)
Q Consensus 87 ~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~la~~~~~~~-~~----------i~~~g~i~~L~~lL~s~~~~v~~~a~~~ 154 (845)
.|.+..|.+.+...+ +..+|..|+-.|.+......... .. -.....-..+++.+.+++. ++..++.+
T Consensus 34 ~~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~ 112 (876)
T d1qgra_ 34 PTFLVELSRVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQC 112 (876)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHH
T ss_pred hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhccccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHH
Confidence 478889999885433 45799999999998765433222 11 1123355678888887664 45567788
Q ss_pred HHHhcCCChhhHHHHHh--cCChhhHHhhhcCC-CCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 155 LGNIIGDGPQLRDYVIN--MGVVPPLLSFIKPD-IPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 155 L~nla~~~~~~r~~i~~--~g~i~~Lv~ll~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
++.++... . -.+ .+.++.+...+.++ ....++..++.+|..++....+..........++.++..+.+.++.
T Consensus 113 i~~i~~~~--~---p~~~Wpeli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~ 187 (876)
T d1qgra_ 113 VAGIACAE--I---PVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPS 187 (876)
T ss_dssp HHHHHHHH--G---GGTCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSC
T ss_pred HHHHHHHH--C---CccccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCcc
Confidence 88876321 0 001 13577777777543 3567888899999999875432222233456778888877765543
Q ss_pred hhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHH-HHHhcCchhhHHhhccCCchhhHHHHHHHHHHH
Q psy12605 232 VSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQ-MVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNI 310 (845)
Q Consensus 232 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl 310 (845)
. +++..++.++............ .....-+++.+...+.+++++++..++.+|..+
T Consensus 188 ~-----------------------~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l 244 (876)
T d1qgra_ 188 N-----------------------NVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKI 244 (876)
T ss_dssp H-----------------------HHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHH
T ss_pred H-----------------------HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence 1 1666666666655443222110 111122456677777889999999999999999
Q ss_pred hcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHH--------------------HhcCChH
Q psy12605 311 VTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAV--------------------IDAGLLP 370 (845)
Q Consensus 311 ~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l--------------------~~~~~i~ 370 (845)
+................+.+...+.+.+++++..+...+..++.......... ....+++
T Consensus 245 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 324 (876)
T d1qgra_ 245 MSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVP 324 (876)
T ss_dssp HHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHH
Confidence 86554433333333445556666677888888888887777754322211110 0112233
Q ss_pred HHHHHhhhccc--ccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCC-hH
Q psy12605 371 KIIANLQKVGR--IVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQ 447 (845)
Q Consensus 371 ~Lv~lL~~~~~--~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~-~~ 447 (845)
.+...+..... ..++..++..|..++..++...+.... ...++.+...+.+++...+..++.+++.+.... ..
T Consensus 325 ~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~~----~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~ 400 (876)
T d1qgra_ 325 ILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIV----PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS 400 (876)
T ss_dssp HHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGGGGH----HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred hhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhhhhh----hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHH
Confidence 44444332211 113455778888888777643222111 112455677778899999999999999988643 22
Q ss_pred HHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCCCC-CCChhHHHhHHHHHHHhhcCCChhHHH-HHH-HHhh
Q psy12605 448 LRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDP-PPSMSTIIELLPALNILIHHHDTSVSI-YLW-LSII 524 (845)
Q Consensus 448 ~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~~~-~~~~~~~~~~l~~l~~ll~~~d~~v~~-~~~-l~~l 524 (845)
.... .-...++.++..+.+. +..++..++|+++.++....+ ..........++.+...+.+ ++.+.. .|| +..+
T Consensus 401 ~~~~-~~~~~~~~l~~~l~d~-~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~v~~~~~~~l~~l 477 (876)
T d1qgra_ 401 QLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA-EPRVASNVCWAFSSL 477 (876)
T ss_dssp HHHH-HHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS-CHHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHHhhcCC-ccHHHHHHHHHHHHHHHHcchhhhhHHHhhhHHHHHHHHhcC-CHHHHHHHHHHHHHH
Confidence 2111 1223456677777644 457888899999999875432 22334456677777766654 344443 355 4433
|
| >d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: Hypothetical protein YibA species: Escherichia coli [TaxId: 562]
Probab=98.94 E-value=6e-08 Score=97.65 Aligned_cols=254 Identities=13% Similarity=0.057 Sum_probs=185.3
Q ss_pred CChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC
Q psy12605 131 GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS 210 (845)
Q Consensus 131 g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~ 210 (845)
...+.|+++|+++++.+|..|+.+|+.+.. + .+++.++.+++++ +..++..|+.+|..+.....
T Consensus 19 ~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~--~---------~~~~~l~~~l~d~-~~~vr~~a~~aL~~l~~~~~---- 82 (276)
T d1oyza_ 19 LNDDELFRLLDDHNSLKRISSARVLQLRGG--Q---------DAVRLAIEFCSDK-NYIRRDIGAFILGQIKICKK---- 82 (276)
T ss_dssp SCHHHHHHHTTCSSHHHHHHHHHHHHHHCC--H---------HHHHHHHHHHTCS-SHHHHHHHHHHHHHSCCCTT----
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHhhCC--H---------hHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccc----
Confidence 467789999999999999999999999863 1 2478889999876 56899999999998864331
Q ss_pred hhHHhhHHHHHH-hhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHH
Q psy12605 211 MSTIIELLPALN-ILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLI 289 (845)
Q Consensus 211 ~~~~~~~l~~L~-~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv 289 (845)
.....++.+. .+++++++. ++..++.+|..+......... ..++.+.
T Consensus 83 --~~~~~~~~l~~~~l~d~~~~-------------------------vr~~a~~aL~~~~~~~~~~~~-----~~~~~l~ 130 (276)
T d1oyza_ 83 --CEDNVFNILNNMALNDKSAC-------------------------VRATAIESTAQRCKKNPIYSP-----KIVEQSQ 130 (276)
T ss_dssp --THHHHHHHHHHHHHHCSCHH-------------------------HHHHHHHHHHHHHHHCGGGHH-----HHHHHHH
T ss_pred --cccchHHHHHHHHhcCCChh-------------------------HHHHHHHHHHHHccccchhhH-----HHHHHHH
Confidence 1233344443 345667777 888999999887654433222 3467788
Q ss_pred hhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCCh
Q psy12605 290 PLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLL 369 (845)
Q Consensus 290 ~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i 369 (845)
..+.++++.++..++.+++.+.. ...++.+..++.+.+..++..+..++..+....... .
T Consensus 131 ~~~~d~~~~vr~~a~~~l~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 190 (276)
T d1oyza_ 131 ITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDI---------R 190 (276)
T ss_dssp HHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHH---------H
T ss_pred HHhcCcchHHHHHHHHHHhhcch-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhcccccc---------c
Confidence 88888899999999988886531 245677888888888889988888888875554432 3
Q ss_pred HHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcCChHHH
Q psy12605 370 PKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR 449 (845)
Q Consensus 370 ~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~ 449 (845)
+.++..+.+ .+..++..+.+++..+.. ...++.|++.+.+ ++++..++++|+.+..
T Consensus 191 ~~~~~~~~~-----~~~~~~~~~~~al~~~~~-----------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~------ 246 (276)
T d1oyza_ 191 DCFVEMLQD-----KNEEVRIEAIIGLSYRKD-----------KRVLSVLCDELKK--NTVYDDIIEAAGELGD------ 246 (276)
T ss_dssp HHHHHHTTC-----SCHHHHHHHHHHHHHTTC-----------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCC------
T ss_pred hhhhhhhhh-----hhhhhhhhhccccchhhh-----------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCC------
Confidence 345555554 478899999998877632 2467888888875 4589999999998862
Q ss_pred HHHHhCCChHHHHhccCCCCChhHHHHHHHHH
Q psy12605 450 DYVINMGVVPPLLSFIKPDIPISFLRNVTWVI 481 (845)
Q Consensus 450 ~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l 481 (845)
.+.++.|..++..+++.++++.++.+|
T Consensus 247 -----~~~~~~L~~~l~~~~d~~vr~~A~~~L 273 (276)
T d1oyza_ 247 -----KTLLPVLDTMLYKFDDNEIITSAIDKL 273 (276)
T ss_dssp -----GGGHHHHHHHHTTSSCCHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 246788888888776667777766554
|
| >d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Importin beta species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.79 E-value=3e-08 Score=107.72 Aligned_cols=357 Identities=13% Similarity=0.103 Sum_probs=210.9
Q ss_pred HHHHHHHHcCC--ChHHHHHHHHHHHHHHcCCCCccHHH----------HHhcCCHHHHHHhhccCCChhHHHHHHHHHH
Q psy12605 47 DMLVVEAARKD--NPELQLLAVQSARKLLSSDKNPPIEA----------LIHSGILPVLVECLERSDRPNLQFEAAWALT 114 (845)
Q Consensus 47 ~~lv~~~l~~~--~~~~~~~a~~~l~~ll~~~~~~~~~~----------i~~~g~i~~Lv~lL~~~~~~~i~~~a~~~L~ 114 (845)
..+. ..+.++ +...+..|+..|++.+.......... -....+.+.+++.+. ++++. +..++.++.
T Consensus 37 ~~l~-~il~~~~~~~~~R~~A~i~lk~~l~~~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~-~~~~~-~~~~~~~~~ 113 (458)
T d1ibrb_ 37 VELS-RVLANPGNSQVARVAAGLQIKNSLTSKDPDIKAQYQQRWLAIDANARREVKNYVLQTLG-TETYR-PSSASQCVA 113 (458)
T ss_dssp HHHH-HHHHCTTSCHHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTT-CCCSS-SCSHHHHHH
T ss_pred HHHH-HHHhcCCCCHHHHHHHHHHHHHHhhccCchhhhHHhhhhccCCHHHHHHHHHHHHhccC-CCcHH-HHHHHHHHH
Confidence 3444 445443 46788889999998876542211111 112345667788874 34433 445556666
Q ss_pred HHhcCChhhHHHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCC-CCHHHH
Q psy12605 115 NIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPD-IPISFL 191 (845)
Q Consensus 115 ~la~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~-~~~~~~ 191 (845)
.++... ... -.-.+.++.++..+.++ +...+..++.+++.++.........-.-...++.++..+..+ ....++
T Consensus 114 ~i~~~~--~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~ 190 (458)
T d1ibrb_ 114 GIACAE--IPV-NQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVK 190 (458)
T ss_dssp HHHHHH--GGG-TCCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred HHHHHh--CCc-ccCcchhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHH
Confidence 655320 000 00135788888888664 567788899999888743321110000112356666666543 356789
Q ss_pred HHHHHHHHHhhcCCCCC-CChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhc
Q psy12605 192 RNVTWVIVNLCRNKDPP-PSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTD 270 (845)
Q Consensus 192 ~~a~~~L~~l~~~~~~~-~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~ 270 (845)
..++.++.++....... ..........+.+..++.+++++ ++..++.++..+.+
T Consensus 191 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-------------------------~~~~~~~~l~~i~~ 245 (458)
T d1ibrb_ 191 LAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTR-------------------------VRVAALQNLVKIMS 245 (458)
T ss_dssp HHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHH-------------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcCCCHH-------------------------HHHHHHHHHHHHHH
Confidence 99999999988654221 11223334667777777888887 88888999988876
Q ss_pred CChhhHHHHHhcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHH--------------------hcCCccchh
Q psy12605 271 GGNDQIQMVIDSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVI--------------------LNCDALSHF 330 (845)
Q Consensus 271 ~~~~~~~~~~~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i--------------------~~~~~l~~L 330 (845)
.........+.......+...+.+.++.++..|+..+..++.......... ......+.+
T Consensus 246 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 325 (458)
T d1ibrb_ 246 LYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL 325 (458)
T ss_dssp HCGGGCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence 554432222233333445555677888899999999988864321110000 000123334
Q ss_pred hHhhcC-------CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCC
Q psy12605 331 PALLTH-------PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGT 403 (845)
Q Consensus 331 ~~lL~~-------~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~ 403 (845)
...+.+ .+..++..+..++..++...++.. . ..+++.+.+.+.+ .++.+|..|+.+|+.++.+.
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~-~~l~~~i~~~l~s-----~~~~~r~aal~~l~~i~~~~ 396 (458)
T d1ibrb_ 326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---V-PHVLPFIKEHIKN-----PDWRYRDAAVMAFGCILEGP 396 (458)
T ss_dssp HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---H-HHHHHHHHHHTTC-----SSHHHHHHHHHHHHHTSSSS
T ss_pred HhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---h-hHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhc
Confidence 444322 223577788888887754322211 0 1133444455544 47899999999999998654
Q ss_pred hHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q psy12605 404 SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIG 443 (845)
Q Consensus 404 ~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~ 443 (845)
......-.-...++.++..++++++.||..|+|+|+.++.
T Consensus 397 ~~~~~~~~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~ 436 (458)
T d1ibrb_ 397 EPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICE 436 (458)
T ss_dssp CTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CHhHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 2211111123567889999999999999999999999875
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=3.9e-05 Score=79.61 Aligned_cols=345 Identities=15% Similarity=0.107 Sum_probs=206.2
Q ss_pred CCHHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHH---HHHHc--CChHHHHHhhCCCChhHHHHHHHHHHHhcCCC
Q psy12605 88 GILPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQ---EVVAA--GAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG 162 (845)
Q Consensus 88 g~i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~---~i~~~--g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~ 162 (845)
..+..++.+|.....+++....+..+..+-..++.... ...+. -..+++..++..++.-+...+...+..++..+
T Consensus 74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~ 153 (477)
T d1ho8a_ 74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQNG 153 (477)
T ss_dssp TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTSTT
T ss_pred HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcCcchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhcc
Confidence 46888999997777788888877777777665443222 12221 23355666677777777788888888888765
Q ss_pred hhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh-hHHhhHHHHHHhhcccC-CchhhHHHHHHH
Q psy12605 163 PQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM-STIIELLPALNILIHHH-DTSVSIYLWLSI 240 (845)
Q Consensus 163 ~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~~l~~L~~ll~~~-~~~~~~~~~~~l 240 (845)
.......-...-...+...+....+......++.++..+.+..+....+ ......++.++..++.. +.+. ...+
T Consensus 154 ~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~----~~~~ 229 (477)
T d1ho8a_ 154 LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQL----ATRI 229 (477)
T ss_dssp TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----------
T ss_pred ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccc----cchh
Confidence 4432221111012233333444446678888889999988866332221 12334555555555421 0000 0000
Q ss_pred hhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhc--CchhhHHhhc-cCCchhhHHHHHHHHHHHhcCChh-
Q psy12605 241 IEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDS--GVVPSLIPLL-SHKEVKVQTASLRAVGNIVTGTDE- 316 (845)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~--g~i~~Lv~lL-~~~~~~v~~~al~~L~nl~~~~~~- 316 (845)
...++- ..+..++..++.++.-|+. +.+....+.+. +.++.++.++ .++.+++.+-++.++.|++.....
T Consensus 230 ~~~~~~-----~~~~Ql~Y~~ll~lWlLSF-~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~ 303 (477)
T d1ho8a_ 230 VATNSN-----HLGIQLQYHSLLLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQ 303 (477)
T ss_dssp -----------CCHHHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTT
T ss_pred hcccCC-----CccHHHHHHHHHHHHHHHc-CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhh
Confidence 000000 0011266677777766665 44445555554 3478888888 467889999999999999864321
Q ss_pred ----hHHHHhcCCccchhhHhhcC--CchhhHHHHHHHHHHh--------h--------------cCChHHH-HHHHhc-
Q psy12605 317 ----QTQVILNCDALSHFPALLTH--PKEKICKEAVWFLSNI--------T--------------AGNQAQV-QAVIDA- 366 (845)
Q Consensus 317 ----~~~~i~~~~~l~~L~~lL~~--~~~~~~~~a~~~L~nl--------~--------------~~~~~~~-~~l~~~- 366 (845)
....++.+++++.+-.+... .|+++.... ..|... + .=+|... +.+...
T Consensus 304 ~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl-~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN 382 (477)
T d1ho8a_ 304 HKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDN 382 (477)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHH
T ss_pred hhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHH-HHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHH
Confidence 23445666666654444322 455554332 222111 1 0112221 122221
Q ss_pred ---------CChHHHHHHhhhcccc-----cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHH
Q psy12605 367 ---------GLLPKIIANLQKVGRI-----VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCE 432 (845)
Q Consensus 367 ---------~~i~~Lv~lL~~~~~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 432 (845)
.++..|+++|.+..++ .+++.+..-||.=++.++.+.|+.+..+-+.|+=..+++++.+++++|+.
T Consensus 383 ~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~ 462 (477)
T d1ho8a_ 383 IDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKY 462 (477)
T ss_dssp SGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHH
T ss_pred HHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHH
Confidence 2588899999741100 03677888899999999999999999998999999999999999999999
Q ss_pred HHHHHHHHhhc
Q psy12605 433 QAVWALGNIIG 443 (845)
Q Consensus 433 ~a~~~L~nl~~ 443 (845)
.|+.|+..+..
T Consensus 463 eAL~avQklm~ 473 (477)
T d1ho8a_ 463 EALKATQAIIG 473 (477)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999987754
|
| >d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Regulatory subunit H of the V-type ATPase domain: Regulatory subunit H of the V-type ATPase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.23 E-value=2.7e-05 Score=80.82 Aligned_cols=248 Identities=15% Similarity=0.126 Sum_probs=157.5
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHH--cCChHHHHHhhCC-----------------CChhHHHHHHHHHHHhc
Q psy12605 99 RSDRPNLQFEAAWALTNIASGTSAQTQEVVA--AGAVPLFLRLLMS-----------------PHSNVCEQAVWALGNII 159 (845)
Q Consensus 99 ~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~--~g~i~~L~~lL~s-----------------~~~~v~~~a~~~L~nla 159 (845)
.+.+.+.+.-|+.+|..+... ++.+..+.. ...+++|++.|.. ....++.+++-|++-++
T Consensus 175 ~~~~~~~~~i~v~~lq~llr~-~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLS 253 (477)
T d1ho8a_ 175 NIEQMDTCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLT 253 (477)
T ss_dssp CTTCHHHHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHT
T ss_pred cccccchHHHHHHHHHHHhcC-ccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHH
Confidence 455667888888899988764 777877754 4467777777743 12367899999999999
Q ss_pred CCChhhHHHHHhc--CChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCC-----hhHHhhHHHHHHhhccc--CCc
Q psy12605 160 GDGPQLRDYVINM--GVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPS-----MSTIIELLPALNILIHH--HDT 230 (845)
Q Consensus 160 ~~~~~~r~~i~~~--g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~-----~~~~~~~l~~L~~ll~~--~~~ 230 (845)
.+ ++....+.+. +.|+.++++++....+.+.|.++.+|.|++........ .....++++.+-.+... .|+
T Consensus 254 F~-~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~De 332 (477)
T d1ho8a_ 254 FN-PVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDE 332 (477)
T ss_dssp TS-HHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSH
T ss_pred cC-HHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCH
Confidence 64 5666666655 35888999998877889999999999999975422211 12233455555444433 355
Q ss_pred hh--hHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhH-HHHH--------h--cCchhhHHhhcc----
Q psy12605 231 SV--SIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQI-QMVI--------D--SGVVPSLIPLLS---- 293 (845)
Q Consensus 231 ~~--~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~--------~--~g~i~~Lv~lL~---- 293 (845)
++ .+..+......+-+.... --++......---+.++-.. +.|. + ..++..|+.+|+
T Consensus 333 dl~edl~~L~~~L~~~~k~lTs------fd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~ 406 (477)
T d1ho8a_ 333 ELRQDISNLKEILENEYQELTS------FDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVR 406 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCH------HHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCc------HHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhccc
Confidence 52 011110000000000000 00011111110001111111 1111 1 135778889885
Q ss_pred ------CCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 294 ------HKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 294 ------~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
+.++.+..-||.=||.++...+..+..+-+.|+-..+++++.++|+++|.+|+.++..+..
T Consensus 407 ~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm~ 473 (477)
T d1ho8a_ 407 NGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHSDSRVKYEALKATQAIIG 473 (477)
T ss_dssp TTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred ccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 3467788889999999999989888888888999999999999999999999999988743
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.82 E-value=1.1e-06 Score=74.39 Aligned_cols=109 Identities=17% Similarity=0.146 Sum_probs=87.2
Q ss_pred ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHH
Q psy12605 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPK 371 (845)
Q Consensus 292 L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 371 (845)
|.++++.||..|+.+|+.+. ...++.|+..|.++++.+|..|+++|+++.. .+.++.
T Consensus 1 L~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~-----------~~~~~~ 57 (111)
T d1te4a_ 1 MADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD-----------ERAVEP 57 (111)
T ss_dssp CCSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS-----------HHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch-----------hhhHHH
Confidence 45677888888888887652 1356778899999999999999999998731 124688
Q ss_pred HHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHH
Q psy12605 372 IIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALG 439 (845)
Q Consensus 372 Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~ 439 (845)
|+.++.+ .++.++..|+++|+.+.. .+.++.|..+++++++.|+..|+.+|.
T Consensus 58 L~~~l~d-----~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL~ 109 (111)
T d1te4a_ 58 LIKLLED-----DSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLE 109 (111)
T ss_dssp HHHHHHH-----CCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred HHhhhcc-----chhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 8999987 489999999999998742 135788889999999999999998874
|
| >d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: PBS lyase HEAT-like repeat domain: MTH187 species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=97.80 E-value=2.7e-06 Score=72.02 Aligned_cols=98 Identities=15% Similarity=0.213 Sum_probs=79.5
Q ss_pred cCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhH
Q psy12605 99 RSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPL 178 (845)
Q Consensus 99 ~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~L 178 (845)
.++++.+|..|+++|..+.. ..++.|++.|+++++.++..|+++|+++... +.++.|
T Consensus 2 ~D~~~~VR~~A~~aL~~~~~------------~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~-----------~~~~~L 58 (111)
T d1te4a_ 2 ADENKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE-----------RAVEPL 58 (111)
T ss_dssp CSSCCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH-----------HHHHHH
T ss_pred CCcCHHHHHHHHHHHHHhCH------------HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh-----------hhHHHH
Confidence 35678899999888876632 3788999999999999999999999988632 247888
Q ss_pred HhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 179 LSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 179 v~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
+.++.++ +..++..|+++|..+.. ...++.|..++.++++.
T Consensus 59 ~~~l~d~-~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~ 99 (111)
T d1te4a_ 59 IKLLEDD-SGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGF 99 (111)
T ss_dssp HHHHHHC-CTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTH
T ss_pred Hhhhccc-hhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHH
Confidence 8889876 44899999999998742 46788888999998888
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.34 E-value=0.052 Score=63.12 Aligned_cols=138 Identities=15% Similarity=0.129 Sum_probs=90.4
Q ss_pred HHHHHHHHH-cCCChHHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccCC-ChhHHHHHHHHHHHHhcCC---
Q psy12605 46 LDMLVVEAA-RKDNPELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERSD-RPNLQFEAAWALTNIASGT--- 120 (845)
Q Consensus 46 i~~lv~~~l-~~~~~~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~~-~~~i~~~a~~~L~~la~~~--- 120 (845)
++.+. +.| ++.+|+.+..|-..|+.+-. .+ |....|++++...+ +..+|..|+-.|.+.....
T Consensus 4 ~~~l~-~ll~~s~~~~~~k~Ae~~L~~~~~-~p----------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~ 71 (959)
T d1wa5c_ 4 LETVA-KFLAESVIASTAKTSERNLRQLET-QD----------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVD 71 (959)
T ss_dssp HHHHH-HHHHHTTSGGGHHHHHHHHHHHHT-ST----------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBC
T ss_pred HHHHH-HHHHHCCChHHHHHHHHHHHHHHc-CC----------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccc
Confidence 44555 454 46788899999999988643 22 45788888885444 4578999998888766321
Q ss_pred -------hhhHHHHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC-hhhHHHHHhcCChhhHHhhhcCCCCHHHHH
Q psy12605 121 -------SAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG-PQLRDYVINMGVVPPLLSFIKPDIPISFLR 192 (845)
Q Consensus 121 -------~~~~~~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~-~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~ 192 (845)
++..+..+. ..|+..|.+++..++.+.+.+++.|+..+ |+. =.+.++.+++.++++.. ..+.
T Consensus 72 ~~~~~~i~~e~k~~Ik----~~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~-----Wp~ll~~l~~~l~s~~~-~~~~ 141 (959)
T d1wa5c_ 72 ENGNHLLPANNVELIK----KEIVPLMISLPNNLQVQIGEAISSIADSDFPDR-----WPTLLSDLASRLSNDDM-VTNK 141 (959)
T ss_dssp SSSCBSSCHHHHHHHH----HHHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT-----CTTHHHHHHTTCCSSCT-THHH
T ss_pred ccccCCCCHHHHHHHH----HHHHHHHhCCcHHHHHHHHHHHHHHHHHhCccc-----cHHHHHHHHHHhCCCCH-HHHH
Confidence 112222222 34555556678899999999999987421 110 01357777888876533 5677
Q ss_pred HHHHHHHHhhcCC
Q psy12605 193 NVTWVIVNLCRNK 205 (845)
Q Consensus 193 ~a~~~L~~l~~~~ 205 (845)
.+..+|..+++..
T Consensus 142 ~~L~~l~~i~k~~ 154 (959)
T d1wa5c_ 142 GVLTVAHSIFKRW 154 (959)
T ss_dssp HHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHH
Confidence 8889999998754
|
| >d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Armadillo repeat domain: Exportin Cse1p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.86 E-value=0.56 Score=53.88 Aligned_cols=122 Identities=13% Similarity=0.126 Sum_probs=85.3
Q ss_pred HHHHHHhhccCCChhHHHHHHHHHHHHhcCChhhHHHHHHcCChHHHHHhhCCC--ChhHHHHHHHHHHHhcCC------
Q psy12605 90 LPVLVECLERSDRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSP--HSNVCEQAVWALGNIIGD------ 161 (845)
Q Consensus 90 i~~Lv~lL~~~~~~~i~~~a~~~L~~la~~~~~~~~~i~~~g~i~~L~~lL~s~--~~~v~~~a~~~L~nla~~------ 161 (845)
++.+.++|..+-+|+.+..|-.-|..+... + |.+..|+..+.++ +..+|..|+-.|.|....
T Consensus 4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~-p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~ 73 (959)
T d1wa5c_ 4 LETVAKFLAESVIASTAKTSERNLRQLETQ-D---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDEN 73 (959)
T ss_dssp HHHHHHHHHHTTSGGGHHHHHHHHHHHHTS-T---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHcC-C---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhccccc
Confidence 457788887778889999999999998654 3 5667777777654 456888888888776531
Q ss_pred -----ChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCChhHHhhHHHHHHhhcccCCch
Q psy12605 162 -----GPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSMSTIIELLPALNILIHHHDTS 231 (845)
Q Consensus 162 -----~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~ 231 (845)
+++.|..+.+ .++..+.++ +..++...+.+++.+++.+-+ .. ..+.++.+.+.+.++++.
T Consensus 74 ~~~~i~~e~k~~Ik~-----~ll~~l~~~-~~~ir~~l~~~i~~I~~~d~p-~~---Wp~ll~~l~~~l~s~~~~ 138 (959)
T d1wa5c_ 74 GNHLLPANNVELIKK-----EIVPLMISL-PNNLQVQIGEAISSIADSDFP-DR---WPTLLSDLASRLSNDDMV 138 (959)
T ss_dssp SCBSSCHHHHHHHHH-----HHHHHHHHS-CHHHHHHHHHHHHHHHHHHST-TT---CTTHHHHHHTTCCSSCTT
T ss_pred ccCCCCHHHHHHHHH-----HHHHHHhCC-cHHHHHHHHHHHHHHHHHhCc-cc---cHHHHHHHHHHhCCCCHH
Confidence 2334444432 334444443 457888999999999885422 22 347899999999988887
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=96.29 E-value=0.0041 Score=58.83 Aligned_cols=165 Identities=13% Similarity=0.067 Sum_probs=105.8
Q ss_pred ChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhHHHHHhcCChhhHHhhhcCCCCHHHHHHHHHHHHHhhcCCCCCCCh
Q psy12605 132 AVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNKDPPPSM 211 (845)
Q Consensus 132 ~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r~~i~~~g~i~~Lv~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~ 211 (845)
.++.|..+++++++.|+..++..|+ .+.+..++..+ +..++..++..+ .
T Consensus 67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~-d~~VR~~aa~~l---~--------- 115 (233)
T d1lrva_ 67 PVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDE-DREVRITVADRL---P--------- 115 (233)
T ss_dssp CGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCS-CHHHHHHHHHHS---C---------
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCC-ChhHHHHHHhcc---C---------
Confidence 4677888999999999999876432 24455555554 557777666532 1
Q ss_pred hHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhh
Q psy12605 212 STIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPL 291 (845)
Q Consensus 212 ~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~l 291 (845)
.+.|..++.++++. ++..++.. ...+.|..+
T Consensus 116 ------~~~L~~Ll~D~d~~-------------------------VR~~aa~~------------------~~~~~L~~L 146 (233)
T d1lrva_ 116 ------LEQLEQMAADRDYL-------------------------VRAYVVQR------------------IPPGRLFRF 146 (233)
T ss_dssp ------TGGGGGGTTCSSHH-------------------------HHHHHHHH------------------SCGGGGGGT
T ss_pred ------HHHHHHHhcCCCHH-------------------------HHHHHHhc------------------cchhHHHHH
Confidence 13455667777776 55555432 123456667
Q ss_pred ccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHH
Q psy12605 292 LSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPK 371 (845)
Q Consensus 292 L~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~ 371 (845)
+.++++.|+..++..+ ..+.+..++++.++.+|..++..|. .+.
T Consensus 147 ~~D~d~~VR~~aA~~~------------------~~~~L~~l~~D~d~~VR~~aa~~L~------------------~~~ 190 (233)
T d1lrva_ 147 MRDEDRQVRKLVAKRL------------------PEESLGLMTQDPEPEVRRIVASRLR------------------GDD 190 (233)
T ss_dssp TTCSCHHHHHHHHHHS------------------CGGGGGGSTTCSSHHHHHHHHHHCC------------------GGG
T ss_pred hcCCCHHHHHHHHHhc------------------CHHHHHHHccCCCHHHHHHHHHhcC------------------cHH
Confidence 7888888887766421 2356778888888889888765432 134
Q ss_pred HHHHhhhcccccCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhCCCCHHHHHHHHH
Q psy12605 372 IIANLQKVGRIVLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQAVW 436 (845)
Q Consensus 372 Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~ 436 (845)
|..++.+ .++.|+..++.. ..+.++..|.+++++|+..+..
T Consensus 191 L~~l~~D-----~d~~VR~aaae~-------------------~~~~ll~~L~D~d~~VR~aA~~ 231 (233)
T d1lrva_ 191 LLELLHD-----PDWTVRLAAVEH-------------------ASLEALRELDEPDPEVRLAIAG 231 (233)
T ss_dssp GGGGGGC-----SSHHHHHHHHHH-------------------SCHHHHHHCCCCCHHHHHHHHC
T ss_pred HHHHHhC-----CCHHHHHHHHHh-------------------ccHHHHHHhCCCCHHHHHHHHH
Confidence 4555555 377787766521 2345667788888888887753
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=94.63 E-value=1.9 Score=42.31 Aligned_cols=169 Identities=19% Similarity=0.155 Sum_probs=103.3
Q ss_pred hhHHhhccC----CchhhHHHHHHHHHHHhcC----ChhhHHHHhcCCccchhhHhh----cCCchhhHHHHHHHHHHhh
Q psy12605 286 PSLIPLLSH----KEVKVQTASLRAVGNIVTG----TDEQTQVILNCDALSHFPALL----THPKEKICKEAVWFLSNIT 353 (845)
Q Consensus 286 ~~Lv~lL~~----~~~~v~~~al~~L~nl~~~----~~~~~~~i~~~~~l~~L~~lL----~~~~~~~~~~a~~~L~nl~ 353 (845)
..+..++.+ .++.++..++-++|+++.. .+... ...++.+...+ ...+.+.+..++.+|+|+.
T Consensus 126 ~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~-----~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g 200 (336)
T d1lsha1 126 SYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-----DELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG 200 (336)
T ss_dssp HHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-----GGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc-----HHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC
Confidence 444555543 3566778888888887632 11111 12333444443 4566666777888999972
Q ss_pred cCChHHHHHHHhcCChHHHHHHhhhcccc--cCChhHHHHHHHHHHHHhcCChHhHHHHHHcCChHHHHHhhC--CCCHH
Q psy12605 354 AGNQAQVQAVIDAGLLPKIIANLQKVGRI--VLRPNLQFEAAWALTNIASGTSAQTQEVVAAGAVPLFLRLLM--SPHSN 429 (845)
Q Consensus 354 ~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~Lv~lL~--~~~~~ 429 (845)
.+ +.++.|..++.+.... ..+..++..|.+++.+++...+...+ +.+..++. ..+++
T Consensus 201 --~p---------~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~--------~~l~~i~~n~~e~~E 261 (336)
T d1lsha1 201 --QP---------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQ--------EIVLPIFLNVAIKSE 261 (336)
T ss_dssp --CG---------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHH--------HHHHHHHHCTTSCHH
T ss_pred --CH---------hHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHH--------HHHHHHHcCCCCChH
Confidence 22 3466777777543211 13578999999999999887664333 23344443 45789
Q ss_pred HHHHHHHHHHHhhcCChHHHHHHHhCCChHHHHhccCCCCChhHHHHHHHHHHHhhcCC
Q psy12605 430 VCEQAVWALGNIIGDGPQLRDYVINMGVVPPLLSFIKPDIPISFLRNVTWVIVNLCRNK 488 (845)
Q Consensus 430 v~~~a~~~L~nl~~~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~~~~~l~nL~~~~ 488 (845)
+|..|...|-..--. . ..+..+...+..+.+..+...+...|.+++...
T Consensus 262 vRiaA~~~lm~t~P~-~---------~~l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~ 310 (336)
T d1lsha1 262 LRIRSCIVFFESKPS-V---------ALVSMVAVRLRREPNLQVASFVYSQMRSLSRSS 310 (336)
T ss_dssp HHHHHHHHHHHTCCC-H---------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhcCCC-H---------HHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC
Confidence 999998888553211 1 135666777777666666656666777887765
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.95 E-value=0.65 Score=44.40 Aligned_cols=201 Identities=14% Similarity=0.108 Sum_probs=122.6
Q ss_pred HHHHcCChHHHHHhhCCCChhHHHHHHHHHHHhcCCChhhH----HHHHhc-CChhhHHhhhcCCCCHHHHHHHHHHHHH
Q psy12605 126 EVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDGPQLR----DYVINM-GVVPPLLSFIKPDIPISFLRNVTWVIVN 200 (845)
Q Consensus 126 ~i~~~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~~~~r----~~i~~~-g~i~~Lv~ll~~~~~~~~~~~a~~~L~~ 200 (845)
.+...+.+..|+..|..=+-+.|..+..+..++-......+ +.+... .++..|+..-.+ .++--.+...|..
T Consensus 64 e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~---~eiAl~~G~mLRE 140 (330)
T d1upka_ 64 ELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES---PEIALNCGIMLRE 140 (330)
T ss_dssp HHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS---TTTHHHHHHHHHH
T ss_pred HHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCC---cchhhhhhHHHHH
Confidence 35556788889999988888899999999988875543222 333321 122223322222 2344444444554
Q ss_pred hhcCCCCCCChhHHhhHHHHHHhhcccCCchhhHHHHHHHhhhChhhHHhhhhhHHHHHHHHHHHHHhhcCChhhHHHHH
Q psy12605 201 LCRNKDPPPSMSTIIELLPALNILIHHHDTSVSIYLWLSIIEKNPQISKILVSKMKILVDTVWALSYLTDGGNDQIQMVI 280 (845)
Q Consensus 201 l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~ 280 (845)
.+++.. ........+.+-.+.+.+..++- ++..+|..++..+-.........+.
T Consensus 141 cik~e~-lak~iL~s~~f~~fF~yv~~~~F-------------------------diasDAf~TfkelLt~hk~~~aefl 194 (330)
T d1upka_ 141 CIRHEP-LAKIILWSEQFYDFFRYVEMSTF-------------------------DIASDAFATFKDLLTRHKLLSAEFL 194 (330)
T ss_dssp HHTSHH-HHHHHHHSGGGGHHHHHTTCSSH-------------------------HHHHHHHHHHHHHHHSSHHHHHHHH
T ss_pred HHhhHH-HHHHHHccHHHHHHHHHHcCCch-------------------------HHHHHHHHHHHHHHHhCHHHHHHHH
Confidence 444331 11111112222223333333333 3888888888876554444444433
Q ss_pred hc---CchhhHHhhccCCchhhHHHHHHHHHHHhcCChh--hH-HHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhc
Q psy12605 281 DS---GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDE--QT-QVILNCDALSHFPALLTHPKEKICKEAVWFLSNITA 354 (845)
Q Consensus 281 ~~---g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~--~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~ 354 (845)
.. .++...-.+|.+++--++..+++.|+.+...... .. ..+-+..-+..++.+|.+.+..++-+|..++.-.++
T Consensus 195 ~~Nyd~Ff~~~~~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVA 274 (330)
T d1upka_ 195 EQHYDRFFSEYEKLLHSENYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVA 274 (330)
T ss_dssp HHTHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhc
Confidence 43 3566677888888888999999999999865332 22 233344678899999999999999999988887766
Q ss_pred C
Q psy12605 355 G 355 (845)
Q Consensus 355 ~ 355 (845)
.
T Consensus 275 N 275 (330)
T d1upka_ 275 N 275 (330)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Leucine-rich repeat variant domain: Leucine-rich repeat variant species: Azotobacter vinelandii [TaxId: 354]
Probab=93.92 E-value=0.11 Score=48.66 Aligned_cols=153 Identities=11% Similarity=0.021 Sum_probs=77.0
Q ss_pred hcCchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCchhhHHHHHHHHHHhhcCChHHH
Q psy12605 281 DSGVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKEKICKEAVWFLSNITAGNQAQV 360 (845)
Q Consensus 281 ~~g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~nl~~~~~~~~ 360 (845)
..-.+..|..+++++++.|+..|+..|+ .+.+..++.+++..+|..+...+.
T Consensus 64 ~~a~~~~L~~Ll~D~d~~VR~~AA~~Lp------------------~~~L~~L~~D~d~~VR~~aa~~l~---------- 115 (233)
T d1lrva_ 64 RYSPVEALTPLIRDSDEVVRRAVAYRLP------------------REQLSALMFDEDREVRITVADRLP---------- 115 (233)
T ss_dssp TTSCGGGGGGGTTCSSHHHHHHHHTTSC------------------SGGGGGTTTCSCHHHHHHHHHHSC----------
T ss_pred hcCCHHHHHHHhcCCCHHHHHHHHHHcC------------------HHHHHHHhcCCChhHHHHHHhccC----------
Confidence 3445677888889999999988875432 234555556666666655543221
Q ss_pred HHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHH-----HHHhc-CChHhHHHHHHcCChHHHHHhhCCCCHHHHHHH
Q psy12605 361 QAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWAL-----TNIAS-GTSAQTQEVVAAGAVPLFLRLLMSPHSNVCEQA 434 (845)
Q Consensus 361 ~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L-----~~l~~-~~~~~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a 434 (845)
.+.|..++.+ .++.|+..++..+ ..+.. .+++.+..+...-+.+.|..+++++++.|+..+
T Consensus 116 --------~~~L~~Ll~D-----~d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~a 182 (233)
T d1lrva_ 116 --------LEQLEQMAAD-----RDYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIV 182 (233)
T ss_dssp --------TGGGGGGTTC-----SSHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHH
T ss_pred --------HHHHHHHhcC-----CCHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHH
Confidence 1122222322 2344444443321 11111 122333333334455667777778888888777
Q ss_pred HHHHH-----HhhcC-ChHHHHHHHhCCChHHHHhccCCCCChhHHHH
Q psy12605 435 VWALG-----NIIGD-GPQLRDYVINMGVVPPLLSFIKPDIPISFLRN 476 (845)
Q Consensus 435 ~~~L~-----nl~~~-~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~~ 476 (845)
+..|+ .+..+ +..+|....+.. -+.++..|. +.+..+++.
T Consensus 183 a~~L~~~~L~~l~~D~d~~VR~aaae~~-~~~ll~~L~-D~d~~VR~a 228 (233)
T d1lrva_ 183 ASRLRGDDLLELLHDPDWTVRLAAVEHA-SLEALRELD-EPDPEVRLA 228 (233)
T ss_dssp HHHCCGGGGGGGGGCSSHHHHHHHHHHS-CHHHHHHCC-CCCHHHHHH
T ss_pred HHhcCcHHHHHHHhCCCHHHHHHHHHhc-cHHHHHHhC-CCCHHHHHH
Confidence 76542 22222 334555544432 244555553 333344443
|
| >d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Mo25 protein domain: Mo25 protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.85 E-value=2.9 Score=39.78 Aligned_cols=190 Identities=8% Similarity=0.090 Sum_probs=133.5
Q ss_pred HHHHHHHHHHHhhcCChh----hHHHHHhc-CchhhHHhhccCCchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhh
Q psy12605 257 ILVDTVWALSYLTDGGND----QIQMVIDS-GVVPSLIPLLSHKEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFP 331 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~----~~~~~~~~-g~i~~Lv~lL~~~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~ 331 (845)
.+.++....+++-+...+ ..+.+.+. .++..|+..- .++++...+-..|+.+... +.....+.....+..+.
T Consensus 85 ~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gy--e~~eiAl~~G~mLREcik~-e~lak~iL~s~~f~~fF 161 (330)
T d1upka_ 85 GKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY--ESPEIALNCGIMLRECIRH-EPLAKIILWSEQFYDFF 161 (330)
T ss_dssp HHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG--GSTTTHHHHHHHHHHHHTS-HHHHHHHHHSGGGGHHH
T ss_pred hhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhc--CCcchhhhhhHHHHHHHhh-HHHHHHHHccHHHHHHH
Confidence 777777777777654332 12333221 2333333333 3555666666777777655 66667777777788888
Q ss_pred HhhcCCchhhHHHHHHHHHHhhcCChHHHHHHHhcC---ChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH---
Q psy12605 332 ALLTHPKEKICKEAVWFLSNITAGNQAQVQAVIDAG---LLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA--- 405 (845)
Q Consensus 332 ~lL~~~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~---~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~--- 405 (845)
+.+..++=++...|..++..+....+.....++..+ ++.....+|.+ .+.-+++.+...|+.+......
T Consensus 162 ~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s-----~NYVtrRqSlKLLgelLldr~N~~v 236 (330)
T d1upka_ 162 RYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHS-----ENYVTKRQSLKLLGELLLDRHNFTI 236 (330)
T ss_dssp HHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTC-----SSHHHHHHHHHHHHHHHHSGGGHHH
T ss_pred HHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcC-----CchHHHHHHHHHHHHHHhhhhHHHH
Confidence 888888889999999999998777777666666543 56666777766 4899999999999998864433
Q ss_pred hHHHHHHcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcC---ChHHHHHHHh
Q psy12605 406 QTQEVVAAGAVPLFLRLLMSPHSNVCEQAVWALGNIIGD---GPQLRDYVIN 454 (845)
Q Consensus 406 ~~~~l~~~g~i~~Lv~lL~~~~~~v~~~a~~~L~nl~~~---~~~~~~~l~~ 454 (845)
..+++.+..-+..++.+|.+.+..++..|..++--+..+ ++...+.+..
T Consensus 237 m~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~ 288 (330)
T d1upka_ 237 MTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLK 288 (330)
T ss_dssp HHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHH
Confidence 234444556688899999999999999999998888764 3556665554
|
| >d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Lipovitellin-phosvitin complex, superhelical domain family: Lipovitellin-phosvitin complex, superhelical domain domain: Lipovitellin-phosvitin complex, superhelical domain species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]
Probab=93.27 E-value=4.1 Score=39.75 Aligned_cols=113 Identities=12% Similarity=0.108 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHhhcCChhhHHHHHhcCchhhHHhhccC-------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccch
Q psy12605 257 ILVDTVWALSYLTDGGNDQIQMVIDSGVVPSLIPLLSH-------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSH 329 (845)
Q Consensus 257 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~-------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~ 329 (845)
-+..++.+|+|+.. .+.++.+.+++.. .+..++..|+.++.++....+.. +.+.
T Consensus 188 ~~~~~LkaLGN~g~-----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~--------v~~~ 248 (336)
T d1lsha1 188 EIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK--------VQEI 248 (336)
T ss_dssp HHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH--------HHHH
T ss_pred HHHHHHHHHhccCC-----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH--------HHHH
Confidence 45566777776642 2345666777632 24679999999999987654332 2244
Q ss_pred hhHhhcC--CchhhHHHHHHHHHHhhcCChHHHHHHHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcC
Q psy12605 330 FPALLTH--PKEKICKEAVWFLSNITAGNQAQVQAVIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASG 402 (845)
Q Consensus 330 L~~lL~~--~~~~~~~~a~~~L~nl~~~~~~~~~~l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~ 402 (845)
+..++.+ .+.++|..|+..|... .-+.. .+..+...+..+ .+..|.......|.+++..
T Consensus 249 l~~i~~n~~e~~EvRiaA~~~lm~t-~P~~~---------~l~~i~~~l~~E----~~~QV~sfv~S~l~~la~s 309 (336)
T d1lsha1 249 VLPIFLNVAIKSELRIRSCIVFFES-KPSVA---------LVSMVAVRLRRE----PNLQVASFVYSQMRSLSRS 309 (336)
T ss_dssp HHHHHHCTTSCHHHHHHHHHHHHHT-CCCHH---------HHHHHHHHHTTC----SCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhc-CCCHH---------HHHHHHHHHHhC----cHHHHHHHHHHHHHHHHhC
Confidence 5566543 5688999998888763 11121 345566666654 5778888888888888764
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.12 E-value=1.7 Score=42.85 Aligned_cols=153 Identities=17% Similarity=0.154 Sum_probs=97.5
Q ss_pred HHHHHHHcCCCh-HHHHHHHHHHHHHHcCCCCccHHHHHhcCCHHHHHHhhccC----------CChhHHHHHHHHHHHH
Q psy12605 48 MLVVEAARKDNP-ELQLLAVQSARKLLSSDKNPPIEALIHSGILPVLVECLERS----------DRPNLQFEAAWALTNI 116 (845)
Q Consensus 48 ~lv~~~l~~~~~-~~~~~a~~~l~~ll~~~~~~~~~~i~~~g~i~~Lv~lL~~~----------~~~~i~~~a~~~L~~l 116 (845)
.+| ..+.+.-. +.....+..|+.-+..++-.-++.+ ..+++..|+.+|..- .++..+..+..||..+
T Consensus 6 ~yv-~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkal 83 (343)
T d2bnxa1 6 MYI-QELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF 83 (343)
T ss_dssp HHH-HHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH
Confidence 456 66655433 3445567777777776644344566 456777788777321 1245788999999999
Q ss_pred hcCChhhHHHHHH-cCChHHHHHhhCCCChhHHHHHHHHHHHhcCCC--hhhHHHH----------HhcCChhhHHhhhc
Q psy12605 117 ASGTSAQTQEVVA-AGAVPLFLRLLMSPHSNVCEQAVWALGNIIGDG--PQLRDYV----------INMGVVPPLLSFIK 183 (845)
Q Consensus 117 a~~~~~~~~~i~~-~g~i~~L~~lL~s~~~~v~~~a~~~L~nla~~~--~~~r~~i----------~~~g~i~~Lv~ll~ 183 (845)
.. +......+++ .+++..++..|.++...++..|+..|..+|..+ +..-..+ .+.+-+.++++.+.
T Consensus 84 mn-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~ 162 (343)
T d2bnxa1 84 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK 162 (343)
T ss_dssp TS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred hc-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHh
Confidence 85 3555555555 789999999999999999999999999998532 2222222 22344556666665
Q ss_pred CCCCHHHHHHHHHHHHHhhc
Q psy12605 184 PDIPISFLRNVTWVIVNLCR 203 (845)
Q Consensus 184 ~~~~~~~~~~a~~~L~~l~~ 203 (845)
.....+.+..++..+..+..
T Consensus 163 ~~~~~ey~~a~m~lIN~li~ 182 (343)
T d2bnxa1 163 SGTSIALKVGCLQLINALIT 182 (343)
T ss_dssp TTSCHHHHHHHHHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHHHHc
Confidence 55444454444444444443
|
| >d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Diap1 N-terninal region-like domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.18 E-value=3.3 Score=40.63 Aligned_cols=157 Identities=9% Similarity=0.088 Sum_probs=102.5
Q ss_pred CChhhHHHHHhcCchhhHHhhcc----C-------CchhhHHHHHHHHHHHhcCChhhHHHHhcCCccchhhHhhcCCch
Q psy12605 271 GGNDQIQMVIDSGVVPSLIPLLS----H-------KEVKVQTASLRAVGNIVTGTDEQTQVILNCDALSHFPALLTHPKE 339 (845)
Q Consensus 271 ~~~~~~~~~~~~g~i~~Lv~lL~----~-------~~~~v~~~al~~L~nl~~~~~~~~~~i~~~~~l~~L~~lL~~~~~ 339 (845)
.+...++.| ..+++..|+.+|. . .+......+++||..+..........+....++..+...+.++..
T Consensus 34 ~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~ 112 (343)
T d2bnxa1 34 NPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVP 112 (343)
T ss_dssp SCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSH
T ss_pred CCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCch
Confidence 344445555 3455666666661 1 124577889999999977655555666677899999999999999
Q ss_pred hhHHHHHHHHHHhhcCC--hHHHHH----------HHhcCChHHHHHHhhhcccccCChhHHHHHHHHHHHHhcCChH--
Q psy12605 340 KICKEAVWFLSNITAGN--QAQVQA----------VIDAGLLPKIIANLQKVGRIVLRPNLQFEAAWALTNIASGTSA-- 405 (845)
Q Consensus 340 ~~~~~a~~~L~nl~~~~--~~~~~~----------l~~~~~i~~Lv~lL~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-- 405 (845)
.++..|...|..+|... +..... .-+.+-...++..+... .+.+.+..+...+..+..+.++
T Consensus 113 ~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~----~~~ey~~a~m~lIN~li~~~~dl~ 188 (343)
T d2bnxa1 113 NMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSG----TSIALKVGCLQLINALITPAEELD 188 (343)
T ss_dssp HHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTT----SCHHHHHHHHHHHHHHHTTCSCHH
T ss_pred HHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhcc----ccHHHHHHHHHHHHHHHcCcccHH
Confidence 99999999998887432 111121 22345567788877765 3566666666666666665543
Q ss_pred ----hHHHHHHcCChHHHHHhhCCCCHHHHH
Q psy12605 406 ----QTQEVVAAGAVPLFLRLLMSPHSNVCE 432 (845)
Q Consensus 406 ----~~~~l~~~g~i~~Lv~lL~~~~~~v~~ 432 (845)
.+..+...|..+.+-.+=...++++..
T Consensus 189 ~R~~lR~E~~~~Gl~~il~~l~~~~~~~L~~ 219 (343)
T d2bnxa1 189 FRVHIRSELMRLGLHQVLQELREIENEDMKV 219 (343)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHTTCCCHHHHH
T ss_pred HHHHHHHHHHHCChHHHHHHHHccCChHHHH
Confidence 356677777776666655555655544
|